Query 007207
Match_columns 613
No_of_seqs 534 out of 2182
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 20:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03788 marine_srt_targ mari 100.0 3.1E-76 6.8E-81 662.3 61.7 506 88-613 2-552 (596)
2 PF08487 VIT: Vault protein in 99.9 4.1E-25 8.8E-30 195.5 12.9 110 83-198 2-118 (118)
3 smart00609 VIT Vault protein I 99.9 1.2E-24 2.5E-29 194.2 12.7 112 81-198 12-130 (130)
4 cd01461 vWA_interalpha_trypsin 99.9 1.1E-23 2.4E-28 199.5 20.3 169 326-499 2-170 (171)
5 PF13768 VWA_3: von Willebrand 99.9 8.5E-24 1.8E-28 197.3 16.7 153 327-487 1-155 (155)
6 cd01463 vWA_VGCC_like VWA Volt 99.9 7.5E-23 1.6E-27 197.6 19.4 166 323-491 10-189 (190)
7 cd01465 vWA_subgroup VWA subgr 99.9 1.1E-21 2.4E-26 185.7 18.9 166 328-497 2-169 (170)
8 cd01466 vWA_C3HC4_type VWA C3H 99.9 1.8E-21 3.9E-26 181.6 17.9 153 327-489 1-155 (155)
9 cd01470 vWA_complement_factors 99.9 1.3E-20 2.8E-25 183.2 16.8 169 328-498 2-197 (198)
10 cd01456 vWA_ywmD_type VWA ywmD 99.8 2.8E-20 6.1E-25 182.0 17.6 167 322-491 16-203 (206)
11 PRK13685 hypothetical protein; 99.8 2.6E-19 5.6E-24 187.1 22.1 172 324-505 86-290 (326)
12 TIGR00868 hCaCC calcium-activa 99.8 9.4E-19 2E-23 197.9 22.7 171 322-502 300-477 (863)
13 cd01467 vWA_BatA_type VWA BatA 99.8 1.2E-18 2.7E-23 166.5 19.2 161 326-493 2-179 (180)
14 cd01480 vWA_collagen_alpha_1-V 99.8 6.6E-19 1.4E-23 169.4 17.1 161 325-494 1-175 (186)
15 cd01453 vWA_transcription_fact 99.8 1.2E-18 2.7E-23 166.6 18.0 163 327-500 4-177 (183)
16 PF13519 VWA_2: von Willebrand 99.8 2E-18 4.3E-23 162.9 17.7 165 328-501 1-172 (172)
17 cd01474 vWA_ATR ATR (Anthrax T 99.8 4E-18 8.7E-23 163.8 19.9 175 325-508 3-184 (185)
18 cd01451 vWA_Magnesium_chelatas 99.8 2.5E-18 5.4E-23 164.2 17.9 156 329-493 3-169 (178)
19 cd01472 vWA_collagen von Wille 99.8 7.3E-18 1.6E-22 158.8 18.1 153 327-489 1-161 (164)
20 cd01464 vWA_subfamily VWA subf 99.8 3.4E-18 7.4E-23 163.0 15.1 143 326-480 3-160 (176)
21 TIGR02921 PEP_integral PEP-CTE 99.8 1.2E-17 2.5E-22 174.4 19.8 100 83-187 413-522 (952)
22 cd01471 vWA_micronemal_protein 99.8 1.1E-17 2.3E-22 161.0 17.7 169 327-499 1-183 (186)
23 TIGR03436 acidobact_VWFA VWFA- 99.8 1.7E-17 3.8E-22 171.5 20.5 176 325-507 52-256 (296)
24 cd01475 vWA_Matrilin VWA_Matri 99.8 1.4E-17 3E-22 165.0 17.8 172 326-507 2-185 (224)
25 cd01469 vWA_integrins_alpha_su 99.8 2E-17 4.2E-22 157.8 17.3 161 328-495 2-175 (177)
26 cd01477 vWA_F09G8-8_type VWA F 99.8 2.5E-17 5.4E-22 158.5 17.5 159 323-485 16-189 (193)
27 cd01473 vWA_CTRP CTRP for CS 99.7 1.6E-16 3.6E-21 153.2 20.1 175 328-506 2-191 (192)
28 PTZ00441 sporozoite surface pr 99.7 1.6E-16 3.5E-21 170.8 21.4 184 325-512 41-237 (576)
29 cd01482 vWA_collagen_alphaI-XI 99.7 2.9E-16 6.3E-21 147.9 17.7 152 328-489 2-162 (164)
30 cd01450 vWFA_subfamily_ECM Von 99.7 4.2E-16 9.2E-21 145.5 16.1 150 328-485 2-159 (161)
31 cd01455 vWA_F11C1-5a_type Von 99.7 7.3E-16 1.6E-20 145.1 17.3 169 327-505 1-189 (191)
32 PF00092 VWA: von Willebrand f 99.7 5.5E-16 1.2E-20 147.3 15.8 167 328-500 1-177 (178)
33 cd01462 VWA_YIEM_type VWA YIEM 99.7 8.1E-16 1.8E-20 142.9 16.3 145 327-480 1-147 (152)
34 cd01454 vWA_norD_type norD typ 99.7 5.4E-16 1.2E-20 147.6 15.1 148 328-477 2-165 (174)
35 PRK13406 bchD magnesium chelat 99.7 1.5E-15 3.2E-20 168.2 19.4 161 322-492 397-571 (584)
36 cd01476 VWA_integrin_invertebr 99.7 2E-15 4.3E-20 141.9 17.1 148 328-484 2-160 (163)
37 COG1240 ChlD Mg-chelatase subu 99.6 4.4E-15 9.5E-20 143.6 15.5 166 323-494 75-250 (261)
38 smart00327 VWA von Willebrand 99.6 3.5E-14 7.6E-19 134.5 19.3 156 326-487 1-164 (177)
39 cd01481 vWA_collagen_alpha3-VI 99.6 4.9E-14 1.1E-18 132.6 18.2 153 327-489 1-163 (165)
40 cd00198 vWFA Von Willebrand fa 99.6 4.6E-14 1E-18 130.5 17.4 150 327-481 1-155 (161)
41 TIGR02031 BchD-ChlD magnesium 99.6 2.7E-14 5.8E-19 159.7 18.5 161 323-492 404-584 (589)
42 COG4245 TerY Uncharacterized p 99.6 3.9E-14 8.5E-19 129.4 15.5 142 328-481 5-162 (207)
43 PF13757 VIT_2: Vault protein 99.6 1.3E-14 2.9E-19 115.6 10.6 69 82-155 10-78 (78)
44 KOG2353 L-type voltage-depende 99.5 1.6E-13 3.4E-18 158.6 16.6 186 321-512 220-419 (1104)
45 TIGR02442 Cob-chelat-sub cobal 99.5 4E-13 8.7E-18 152.0 18.9 157 323-488 462-632 (633)
46 cd01457 vWA_ORF176_type VWA OR 99.5 4.1E-13 8.9E-18 130.6 15.6 147 326-480 2-165 (199)
47 cd01452 VWA_26S_proteasome_sub 99.4 3.3E-11 7.1E-16 114.5 19.4 155 328-492 5-176 (187)
48 PF10138 vWA-TerF-like: vWA fo 99.4 6.3E-11 1.4E-15 112.2 18.7 159 327-494 2-174 (200)
49 COG2425 Uncharacterized protei 99.3 1.4E-11 3.1E-16 129.6 12.0 146 327-481 273-419 (437)
50 cd01460 vWA_midasin VWA_Midasi 99.3 1.6E-10 3.4E-15 115.7 18.7 172 325-504 59-258 (266)
51 PRK10997 yieM hypothetical pro 99.2 3E-10 6.5E-15 122.1 16.6 144 323-475 320-465 (487)
52 cd01458 vWA_ku Ku70/Ku80 N-ter 99.1 1.7E-09 3.6E-14 106.8 15.5 141 328-469 3-174 (218)
53 PF11775 CobT_C: Cobalamin bio 99.1 3.2E-09 7E-14 101.3 14.6 174 324-506 10-217 (219)
54 PF04056 Ssl1: Ssl1-like; Int 98.8 1.1E-07 2.4E-12 90.3 15.6 157 332-497 1-168 (193)
55 TIGR01651 CobT cobaltochelatas 98.8 3.2E-08 6.9E-13 107.0 12.5 175 323-506 389-597 (600)
56 PF05762 VWA_CoxE: VWA domain 98.8 9.3E-08 2E-12 94.4 14.0 131 323-464 54-186 (222)
57 PF09967 DUF2201: VWA-like dom 98.6 2.1E-07 4.6E-12 83.2 8.7 96 329-438 1-96 (126)
58 COG4867 Uncharacterized protei 98.5 2.4E-06 5.1E-11 87.6 14.9 159 324-499 461-643 (652)
59 COG4548 NorD Nitric oxide redu 98.5 5.1E-07 1.1E-11 95.3 9.1 177 325-506 445-636 (637)
60 KOG2807 RNA polymerase II tran 98.3 1.3E-05 2.9E-10 79.6 15.0 170 325-509 59-239 (378)
61 COG2304 Uncharacterized protei 98.3 1.2E-05 2.6E-10 86.7 15.6 170 323-495 34-205 (399)
62 COG4547 CobT Cobalamin biosynt 98.3 4.2E-06 9.2E-11 86.6 11.0 168 327-505 414-617 (620)
63 PF04811 Sec23_trunk: Sec23/Se 98.3 2.9E-05 6.4E-10 77.9 16.5 164 325-492 2-227 (243)
64 KOG3768 DEAD box RNA helicase 98.3 1.3E-05 2.7E-10 85.4 13.6 174 329-511 4-234 (888)
65 PF06707 DUF1194: Protein of u 98.2 7.4E-05 1.6E-09 71.5 17.4 177 326-506 3-203 (205)
66 cd01459 vWA_copine_like VWA Co 98.2 3.9E-05 8.4E-10 76.7 16.3 148 327-479 32-206 (254)
67 cd01468 trunk_domain trunk dom 98.2 0.0001 2.2E-09 73.8 19.3 163 325-491 2-224 (239)
68 cd01479 Sec24-like Sec24-like: 98.2 0.0001 2.2E-09 74.0 17.6 159 325-489 2-219 (244)
69 PRK05325 hypothetical protein; 97.8 0.00046 1E-08 72.8 14.5 163 325-504 221-396 (401)
70 cd01478 Sec23-like Sec23-like: 97.7 0.0012 2.7E-08 66.9 16.4 164 325-492 2-257 (267)
71 PTZ00395 Sec24-related protein 97.7 0.014 3E-07 69.0 25.3 268 323-593 949-1320(1560)
72 smart00187 INB Integrin beta s 97.6 0.0042 9.1E-08 65.8 18.7 183 309-509 87-342 (423)
73 PF04285 DUF444: Protein of un 97.6 0.0018 3.9E-08 69.0 15.5 160 325-504 245-418 (421)
74 PLN00162 transport protein sec 97.5 0.0043 9.3E-08 72.1 19.2 178 323-504 121-392 (761)
75 TIGR02877 spore_yhbH sporulati 97.5 0.0019 4.2E-08 67.0 14.6 158 325-501 201-370 (371)
76 COG3552 CoxE Protein containin 97.5 0.00095 2.1E-08 68.4 11.2 114 323-443 215-330 (395)
77 KOG1327 Copine [Signal transdu 97.5 0.0023 5.1E-08 69.2 14.4 152 325-481 284-465 (529)
78 KOG1985 Vesicle coat complex C 97.4 0.0069 1.5E-07 67.9 17.6 180 309-491 277-511 (887)
79 TIGR00627 tfb4 transcription f 97.3 0.0098 2.1E-07 60.3 16.4 171 327-499 3-218 (279)
80 PF11443 DUF2828: Domain of un 97.3 0.0016 3.4E-08 71.4 10.6 103 327-436 341-448 (534)
81 KOG2884 26S proteasome regulat 97.2 0.021 4.6E-07 54.2 16.4 141 327-477 4-157 (259)
82 PF03731 Ku_N: Ku70/Ku80 N-ter 97.2 0.0016 3.5E-08 64.4 9.2 107 329-436 2-140 (224)
83 PF07002 Copine: Copine; Inte 97.2 0.0067 1.4E-07 55.6 12.2 121 342-466 11-146 (146)
84 KOG1984 Vesicle coat complex C 97.1 0.14 3E-06 58.2 24.0 226 323-552 414-712 (1007)
85 PF03850 Tfb4: Transcription f 97.1 0.044 9.6E-07 55.7 18.3 171 327-499 2-216 (276)
86 COG5151 SSL1 RNA polymerase II 96.9 0.012 2.7E-07 58.4 11.9 172 325-510 86-271 (421)
87 COG3864 Uncharacterized protei 96.5 0.0085 1.8E-07 59.9 7.5 121 327-476 262-382 (396)
88 TIGR00578 ku70 ATP-dependent D 96.4 0.045 9.8E-07 61.9 13.8 110 326-436 10-150 (584)
89 KOG4465 Uncharacterized conser 96.3 0.026 5.7E-07 57.4 10.0 137 321-467 422-563 (598)
90 COG5028 Vesicle coat complex C 96.2 2.6 5.6E-05 47.7 25.5 175 312-490 262-486 (861)
91 COG5148 RPN10 26S proteasome r 96.1 0.19 4.2E-06 46.7 13.7 141 327-477 4-156 (243)
92 COG5242 TFB4 RNA polymerase II 95.8 0.97 2.1E-05 43.4 17.2 150 344-497 43-221 (296)
93 COG2718 Uncharacterized conser 95.5 0.11 2.4E-06 53.7 10.7 162 327-505 247-418 (423)
94 PF00362 Integrin_beta: Integr 95.3 0.38 8.2E-06 52.1 14.4 187 308-509 89-345 (426)
95 PF11265 Med25_VWA: Mediator c 94.8 0.26 5.7E-06 48.2 10.5 112 323-436 10-150 (226)
96 COG1721 Uncharacterized conser 94.6 0.28 6.1E-06 53.3 11.3 105 325-436 223-334 (416)
97 PF14415 DUF4424: Domain of un 94.4 0.38 8.3E-06 48.2 10.8 50 103-155 2-69 (253)
98 KOG1986 Vesicle coat complex C 93.8 7.6 0.00016 43.7 19.9 175 325-503 120-378 (745)
99 KOG2487 RNA polymerase II tran 91.0 11 0.00023 37.6 15.0 168 325-496 22-233 (314)
100 COG5271 MDN1 AAA ATPase contai 87.1 8.7 0.00019 47.9 13.2 173 327-506 4393-4594(4600)
101 KOG1226 Integrin beta subunit 80.5 5 0.00011 45.6 7.5 60 307-372 118-180 (783)
102 PF06415 iPGM_N: BPG-independe 71.6 26 0.00056 34.5 9.0 63 408-470 13-75 (223)
103 PF04597 Ribophorin_I: Ribopho 67.1 64 0.0014 35.3 11.9 90 95-199 11-104 (432)
104 KOG2326 DNA-binding subunit of 66.5 1.4E+02 0.0031 33.4 14.0 132 327-466 5-165 (669)
105 PRK05434 phosphoglyceromutase; 55.7 69 0.0015 35.7 9.7 63 408-470 95-157 (507)
106 PF15417 DUF4624: Domain of un 52.4 1.5E+02 0.0032 25.6 8.8 91 101-195 15-107 (132)
107 COG5047 SEC23 Vesicle coat com 49.0 47 0.001 36.9 6.7 51 323-375 119-169 (755)
108 TIGR01307 pgm_bpd_ind 2,3-bisp 48.5 1.2E+02 0.0025 33.8 9.9 61 409-469 92-152 (501)
109 PF01882 DUF58: Protein of unk 47.4 21 0.00047 28.9 3.2 41 325-365 39-85 (86)
110 cd02004 TPP_BZL_OCoD_HPCL Thia 45.8 1.6E+02 0.0035 27.3 9.4 41 474-515 131-171 (172)
111 KOG2291 Oligosaccharyltransfer 42.7 1.7E+02 0.0037 32.4 9.8 96 86-197 31-132 (602)
112 KOG0070 GTP-binding ADP-ribosy 40.2 1.6E+02 0.0035 27.9 8.1 45 326-374 85-129 (181)
113 PLN02538 2,3-bisphosphoglycera 36.4 2.5E+02 0.0054 31.6 10.2 60 408-469 114-173 (558)
114 PF08496 Peptidase_S49_N: Pept 32.9 72 0.0016 29.5 4.6 43 326-368 96-138 (155)
115 cd02010 TPP_ALS Thiamine pyrop 31.9 4.3E+02 0.0093 24.7 10.5 42 474-516 129-170 (177)
116 cd02009 TPP_SHCHC_synthase Thi 31.0 3E+02 0.0066 25.6 8.7 40 474-514 134-173 (175)
117 cd02013 TPP_Xsc_like Thiamine 30.6 4.8E+02 0.01 24.8 10.8 43 474-516 135-179 (196)
118 PF00733 Asn_synthase: Asparag 28.6 2.9E+02 0.0063 26.9 8.7 96 407-510 2-100 (255)
119 PF10221 DUF2151: Cell cycle a 27.9 8.3E+02 0.018 28.4 12.7 93 344-438 46-166 (695)
120 COG3364 Zn-ribbon containing p 27.6 68 0.0015 27.2 3.0 38 171-215 66-103 (112)
121 KOG1924 RhoA GTPase effector D 27.0 88 0.0019 36.1 4.7 13 134-146 640-652 (1102)
122 cd02006 TPP_Gcl Thiamine pyrop 27.0 5.6E+02 0.012 24.4 10.8 44 474-517 149-195 (202)
123 cd02001 TPP_ComE_PpyrDC Thiami 25.8 3.9E+02 0.0085 24.4 8.3 42 473-515 113-154 (157)
124 KOG0071 GTP-binding ADP-ribosy 25.6 1.1E+02 0.0025 27.7 4.3 29 326-357 85-113 (180)
125 PF10633 NPCBM_assoc: NPCBM-as 25.5 1E+02 0.0022 24.5 3.8 30 183-212 45-74 (78)
126 cd02005 TPP_PDC_IPDC Thiamine 24.7 5.4E+02 0.012 24.1 9.3 109 402-516 47-174 (183)
127 cd02003 TPP_IolD Thiamine pyro 24.0 6.4E+02 0.014 24.1 11.8 42 474-516 143-184 (205)
128 PF00025 Arf: ADP-ribosylation 23.4 3.9E+02 0.0084 24.7 8.0 28 327-357 83-110 (175)
129 TIGR01451 B_ant_repeat conserv 23.0 3.1E+02 0.0067 20.1 6.2 39 103-144 13-52 (53)
130 PF03896 TRAP_alpha: Transloco 22.0 2.4E+02 0.0052 28.9 6.5 79 103-192 100-196 (285)
131 TIGR03104 trio_amidotrans aspa 21.0 6.5E+02 0.014 28.7 10.5 94 408-509 246-345 (589)
132 PF07610 DUF1573: Protein of u 20.7 66 0.0014 22.8 1.6 14 183-196 32-45 (45)
No 1
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=100.00 E-value=3.1e-76 Score=662.27 Aligned_cols=506 Identities=24% Similarity=0.408 Sum_probs=419.3
Q ss_pred cceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEEEEeecccccccc--cccc
Q 007207 88 MNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAG--KSAS 165 (613)
Q Consensus 88 ~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~~A~~~~--~~~~ 165 (613)
.++|+++|+| .+|+|+++|+|+| ++++++||.|+||||++|+|++|+|+||||+|+|+|+||++|+++| ++++
T Consensus 2 ~~~v~~~V~g--~~A~v~v~q~f~N---~~~~~~E~~y~fPLp~~aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~ 76 (596)
T TIGR03788 2 DTDANITVTG--LIARTEVTQTFRN---PSQFWVEGRYVFPLPENAAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAE 76 (596)
T ss_pred CceEEEEEEc--ceEEEEEEEEEEC---CCCCcEEEEEEeeCCCCcEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHh
Confidence 4567777777 7799999999999 7899999999999999999999999999999999999999999655 4577
Q ss_pred cccCCcc---cCCeeEEecCCCCCCCEEEEEEEEEEEeeccCCeEEEEeeecC-cccccCcccC----------------
Q 007207 166 VETGSFL---KPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKF-PEYVTPAIKK---------------- 225 (613)
Q Consensus 166 ~~~~~ll---~~n~F~~~V~ni~p~~~v~v~i~Y~q~L~~~~g~~~~~lp~~~-P~~v~p~~~~---------------- 225 (613)
|++++|+ ++|+|+++|||||||++++|+|+|+|+|.+++|.|++++|+++ |+|..+....
T Consensus 77 G~~a~Lleq~~~~~F~~~V~nIpp~~~v~i~l~Y~q~L~~~~g~~~~~lP~~~~pry~~~~~~~~~~~~~~~~~~~~~~~ 156 (596)
T TIGR03788 77 GKKAALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSLRLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQ 156 (596)
T ss_pred ccceeeeecccCCceeEEeeccCCCCEEEEEEEEEEEeeecCCEEEEEeeeeecCCccCCcccccccccccccccccccc
Confidence 8999998 6999999999999999999999999999999999998887765 6654221100
Q ss_pred C-------------------CcccceeeeeecCCCceeeeeCCCCceeeEeecCceEEEeeccccccccCCceEEEEEec
Q 007207 226 I-------------------PKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVS 286 (613)
Q Consensus 226 ~-------------------~~~~~i~~~v~~~~~~~v~i~s~sh~l~~~~~~~~~~~~~~~~~~~~~~~~Df~l~~~~~ 286 (613)
. ..++.++++++.+.+.. .+.|++|++++.+...+...++++.. ..++|+||+|.|++.
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~-~i~s~~h~i~~~~~~~~~~~v~l~~~-~~~~d~Df~l~~~~~ 234 (596)
T TIGR03788 157 VPDADKISAPRVLDPDDDAPSSQASINVDLNAGLPLD-SITSPSHPIQIEQQGQSGYTISLAQG-QVIADRDFVLTWRPA 234 (596)
T ss_pred cccccccCCccccCcccCCCCcceEEEEEecCCCccc-eeeCCCCceEeecCCCceEEEEeCCC-CcCCCCCEEEEEEeC
Confidence 0 01233444455444322 57899999998776656666666542 358999999999997
Q ss_pred CCCcccceEEeCCCCCCCCCcceEEEEEecCCC-CCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEE
Q 007207 287 PSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTA-KSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFN 365 (613)
Q Consensus 287 ~~~~~~~v~~~~~~~~~~d~~~~f~~~~~P~~~-~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~ 365 (613)
..+.. .+++.. +..++.+||++.+.|+.. ......+++++||||+||||.|.+++.+|+++..++..|+++|+|+
T Consensus 235 ~~~~p-~~~~~~---~~~~~~~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ 310 (596)
T TIGR03788 235 QGEAP-SAALFR---EQIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFN 310 (596)
T ss_pred CCCCc-eEEEEE---EccCCCcEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEE
Confidence 66543 332221 112456789888888763 3346788999999999999999999999999999999999999999
Q ss_pred EEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcC-CCCccEEEEEecCCcCchhHHHH
Q 007207 366 IVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNS-RGSIPIIFLVTDGAVEDERQICD 444 (613)
Q Consensus 366 Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~~~-~~~~~~IillTDG~~~~~~~~~~ 444 (613)
|+.|++++..+.+.+..++..++..+.++|. .+.++|||+++.||+.|++..... .+..+.|||||||..+++..+.+
T Consensus 311 ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~~~~~~~ 389 (596)
T TIGR03788 311 IIQFDSDVTLLFPVPVPATAHNLARARQFVA-GLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGNEDALFQ 389 (596)
T ss_pred EEEECCcceEeccccccCCHHHHHHHHHHHh-hCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCCHHHHHH
Confidence 9999999998888777789999999999998 788999999999999999874322 34567899999999887776666
Q ss_pred HHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEEEEecCCCCce
Q 007207 445 AMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEF 524 (613)
Q Consensus 445 ~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l~~~~~~~~~ 524 (613)
.++... .+.+||+||||.++|..+|+.||+.++|.|+++.+.+++..+|.+++.++.+|+++|+.++|.. ....
T Consensus 390 ~~~~~~-----~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~-~~~~ 463 (596)
T TIGR03788 390 LIRTKL-----GDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN-GNAA 463 (596)
T ss_pred HHHHhc-----CCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC-Cccc
Confidence 654331 2379999999999999999999999999999999999999999999999999999999999964 3467
Q ss_pred eeccCCCCCCCCCCcEEEEEEEcCCCCCeEEEEEEeCCcccEEEEEeccc-cCCCcHHHHHHHHHHHHHHHHHhhc-CCh
Q 007207 525 EMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQL-AKDIPLDRICAKQQIDLLTAQAWFS-EDK 602 (613)
Q Consensus 525 ~v~p~~ip~l~~g~~~~v~g~~~~~~~~~v~l~g~~~~~~~~~~~l~~~~-~~~~~l~~lwA~~~I~~L~~~~~~~-~~~ 602 (613)
+++|..+|+||.|++++|+||+ +..+.+++++|..+++. |+.++++.. ..+..|++|||+++|++|+++.|.. +.+
T Consensus 464 ~v~P~~~p~L~~g~~l~v~g~~-~~~~~~i~v~g~~~~~~-~~~~~~~~~~~~~~~l~~lwA~~~I~~L~~~~~~~~~~~ 541 (596)
T TIGR03788 464 DVYPSPIPDLYRGEPLQIAIKL-QQAAGELQLTGRTGSQP-WSQQLDLDSAAPGKGIDKLWARRKIDSLEDSLRYGANEE 541 (596)
T ss_pred eeccCCCccccCCCEEEEEEEe-cCCCCeEEEEEEcCCce-EEEEEecCCCCCcchHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 9999999999999999999996 45688999999988864 888888864 3457799999999999999887644 456
Q ss_pred HHHHHhhhccC
Q 007207 603 RLEEKVRCSAI 613 (613)
Q Consensus 603 ~l~~~v~~ls~ 613 (613)
+++++|++||+
T Consensus 542 ~~~~~Ii~Lsl 552 (596)
T TIGR03788 542 KVKDQVTALAL 552 (596)
T ss_pred HHHHHHHHHHH
Confidence 79999999985
No 2
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=99.92 E-value=4.1e-25 Score=195.52 Aligned_cols=110 Identities=20% Similarity=0.307 Sum_probs=100.0
Q ss_pred ccccccceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEEEEeecccccccc-
Q 007207 83 LIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAG- 161 (613)
Q Consensus 83 ~~pL~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~~A~~~~- 161 (613)
.+||++..|+++|.+ .+|+|+++|+|.| ++++++|+.|.||||++|+|++|+|+||||+|+|+|+||++|++.|
T Consensus 2 ~~~l~s~~v~~~I~~--~~a~t~v~q~f~N---~~~~~~E~~y~fpLp~~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~ 76 (118)
T PF08487_consen 2 QVPLKSVHVKVTIID--RFARTTVTQTFEN---PSSEPLEAVYSFPLPEGAAISGFSMWIGGRTIEGEVKEKEEAKQEYE 76 (118)
T ss_pred CceEEEEEEEEEEEc--cEEEEEEEEEEEC---CCCCcEEEEEEeECCCCeEEEEEEEEECCEEEEEEEecHHHHHHHHH
Confidence 467888777777777 7799999999999 7899999999999999999999999999999999999999999654
Q ss_pred -cccccccCCcc---cCCe--eEEecCCCCCCCEEEEEEEEEE
Q 007207 162 -KSASVETGSFL---KPNI--FTLTLPQIDGGSYLSIRLRWSQ 198 (613)
Q Consensus 162 -~~~~~~~~~ll---~~n~--F~~~V~ni~p~~~v~v~i~Y~q 198 (613)
++++|++++|+ +++. |+++| |||||++++|+|+|+|
T Consensus 77 ~a~~~g~~a~lle~~~~~~~~F~~~v-ni~p~~~v~i~l~Y~e 118 (118)
T PF08487_consen 77 EAVAQGKSAALLEQSDPNVEVFTVSV-NIPPNEEVTIELTYVE 118 (118)
T ss_pred HHHHcCCCchhhcccCCCCcEEEEEE-EeCCCCEEEEEEEEEC
Confidence 56789999998 4677 99999 9999999999999986
No 3
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=99.92 E-value=1.2e-24 Score=194.19 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=101.6
Q ss_pred CcccccccceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEEEEeeccccccc
Q 007207 81 PSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGA 160 (613)
Q Consensus 81 ~~~~pL~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~~A~~~ 160 (613)
...+||++.+|+++|.+ .+|+|+++|+|.| +++.+.|+.|.||||++|+|++|+|+||||+|.|+|+||++|+++
T Consensus 12 ~~~~pL~s~~v~~~I~~--~~a~t~vtq~f~N---~~~~~~e~~~~~~lp~~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~ 86 (130)
T smart00609 12 VNGVPLYSLKVNSKVTS--RFAHTVVTSRVVN---RAVPAQEVTFDVELPKTAFISNFAMTIDGKTYVGEIKEKEVAQKQ 86 (130)
T ss_pred CCccceEEEEEEEEEEC--CEEEEEEEEEEEC---CCCCceEEEEEcCCCCCcEEEeEEEEECCEEEEEEEeeHHHHHHH
Confidence 35788888888888888 7799999999999 678889999999999999999999999999999999999999965
Q ss_pred c--cccccccCCcc---cC--CeeEEecCCCCCCCEEEEEEEEEE
Q 007207 161 G--KSASVETGSFL---KP--NIFTLTLPQIDGGSYLSIRLRWSQ 198 (613)
Q Consensus 161 ~--~~~~~~~~~ll---~~--n~F~~~V~ni~p~~~v~v~i~Y~q 198 (613)
| ++++|++++|+ ++ |+|+++| |||||++++|+|+|+|
T Consensus 87 Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg~~v~v~l~Y~e 130 (130)
T smart00609 87 YEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPGSKVTFELTYEE 130 (130)
T ss_pred HHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCCCEEEEEEEEEC
Confidence 4 55789999998 56 9999999 9999999999999985
No 4
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.92 E-value=1.1e-23 Score=199.46 Aligned_cols=169 Identities=44% Similarity=0.635 Sum_probs=145.9
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT 405 (613)
|++++||||+||||.+.+++.+++++..++..++++++|+|+.|+++...+.+.....+..++.++++++. .+.++|+|
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~T 80 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVN-RLQALGGT 80 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHH-hcCCCCCc
Confidence 78999999999999999999999999999999999999999999999887765544556778888888887 67789999
Q ss_pred chHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEE
Q 007207 406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY 485 (613)
Q Consensus 406 ~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~ 485 (613)
++..||..|++.+...++..+.||++|||..++..++.+.+++.. ..+++||+||+|.+.+..+|+.||+.+||.|
T Consensus 81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~ 156 (171)
T cd01461 81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKNVREAL----SGRIRLFTFGIGSDVNTYLLERLAREGRGIA 156 (171)
T ss_pred CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCHHHHHHHHHHhc----CCCceEEEEEeCCccCHHHHHHHHHcCCCeE
Confidence 999999999999876556678999999999877666555555432 2258999999999889999999999999999
Q ss_pred EEcCCCcHHHHHHH
Q 007207 486 GAAYDLDSIEIQMQ 499 (613)
Q Consensus 486 ~~v~~~~~l~~~l~ 499 (613)
+++.+.+++.+++.
T Consensus 157 ~~~~~~~~~~~~~~ 170 (171)
T cd01461 157 RRIYETDDIESQLL 170 (171)
T ss_pred EEecChHHHHHHhc
Confidence 99999999988764
No 5
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.91 E-value=8.5e-24 Score=197.30 Aligned_cols=153 Identities=39% Similarity=0.580 Sum_probs=134.2
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC-CCCc
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA-GGST 405 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~-~GgT 405 (613)
.+++||||+|+||.|.+ +.+|+++..+++.|+++++|+|+.|++++..+.+...+++.++++++.+||+ .+.+ .|+|
T Consensus 1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~-~~~~~~G~t 78 (155)
T PF13768_consen 1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIK-SLEANSGGT 78 (155)
T ss_pred CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHH-HhcccCCCc
Confidence 37999999999999988 9999999999999999999999999999998888888889999999999998 6777 9999
Q ss_pred chHHHHHHHHHHHhcCCCCccEEEEEecCCc-CchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcE
Q 007207 406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY 484 (613)
Q Consensus 406 ~l~~aL~~A~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~ 484 (613)
++..||+.|+..+ ..++..+.|+|+|||.+ +.+..+.+.+++. . ..+++|++|+|...+..+|+.||+.++|.
T Consensus 79 ~l~~aL~~a~~~~-~~~~~~~~IilltDG~~~~~~~~i~~~v~~~----~-~~~~i~~~~~g~~~~~~~L~~LA~~~~G~ 152 (155)
T PF13768_consen 79 DLLAALRAALALL-QRPGCVRAIILLTDGQPVSGEEEILDLVRRA----R-GHIRIFTFGIGSDADADFLRELARATGGS 152 (155)
T ss_pred cHHHHHHHHHHhc-ccCCCccEEEEEEeccCCCCHHHHHHHHHhc----C-CCceEEEEEECChhHHHHHHHHHHcCCCE
Confidence 9999999999886 34556789999999996 4445555555432 1 34899999999999999999999999999
Q ss_pred EEE
Q 007207 485 YGA 487 (613)
Q Consensus 485 ~~~ 487 (613)
|.+
T Consensus 153 ~~f 155 (155)
T PF13768_consen 153 FHF 155 (155)
T ss_pred EEC
Confidence 864
No 6
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.90 E-value=7.5e-23 Score=197.56 Aligned_cols=166 Identities=27% Similarity=0.397 Sum_probs=135.1
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeecccc----ccCHHHHHHHHHHHhhc
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSME----LATKEAVERAHQWIGIN 398 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~----~~~~~~~~~a~~~i~~~ 398 (613)
...|++++||||+||||.+.+++.+|+++..+++.|+++++|+|+.|++++..+.+... ..+..+.+.+.++|. .
T Consensus 10 ~~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 88 (190)
T cd01463 10 ATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALD-M 88 (190)
T ss_pred ccCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHh-h
Confidence 35789999999999999999999999999999999999999999999999887765322 234567777788886 7
Q ss_pred CCCCCCcchHHHHHHHHHHHhc---C------CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 007207 399 FIAGGSTNICAPLTKAVEMLTN---S------RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC 469 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~---~------~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~ 469 (613)
+.++|+|++..||..|++.+.. . +...+.|||||||.+++........... .....+++||+||+|.+.
T Consensus 89 l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~--~~~~~~v~i~tigiG~~~ 166 (190)
T cd01463 89 LEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWD--KNSEIPVRVFTYLIGREV 166 (190)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhccc--ccCCCcEEEEEEecCCcc
Confidence 8889999999999999998875 1 1335689999999988765544433211 122346899999999985
Q ss_pred -CHHHHHHHHHhcCcEEEEcCCC
Q 007207 470 -NHYFLRMLAMISRGYYGAAYDL 491 (613)
Q Consensus 470 -~~~~L~~lA~~~gG~~~~v~~~ 491 (613)
|..+|+.||..++|.|+++.+.
T Consensus 167 ~d~~~L~~lA~~~~G~~~~i~~~ 189 (190)
T cd01463 167 TDRREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred ccchHHHHHHhhcCCeEEEcccC
Confidence 8999999999999999998874
No 7
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.88 E-value=1.1e-21 Score=185.69 Aligned_cols=166 Identities=23% Similarity=0.308 Sum_probs=132.0
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcch
Q 007207 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNI 407 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l 407 (613)
+++||+|+||||.+.+++.+|+++..++..++++++++++.|+++...+.+.....+. ..+.+.+. .+.++|+|++
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~~~~---~~l~~~l~-~~~~~g~T~~ 77 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPVRDK---AAILAAID-RLTAGGSTAG 77 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCcccchH---HHHHHHHH-cCCCCCCCCH
Confidence 6899999999999989999999999999999999999999999998887765443334 34444554 5667899999
Q ss_pred HHHHHHHHHHHhcCC--CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEE
Q 007207 408 CAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY 485 (613)
Q Consensus 408 ~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~ 485 (613)
..+|..|++.+.... ...+.|||+|||.+++.....+.+.+.++.....+++||+||+|...+..+|+.||+.++|.|
T Consensus 78 ~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~~ 157 (170)
T cd01465 78 GAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNT 157 (170)
T ss_pred HHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCceE
Confidence 999999999886532 223689999999986543222333333333234468999999999899999999999999999
Q ss_pred EEcCCCcHHHHH
Q 007207 486 GAAYDLDSIEIQ 497 (613)
Q Consensus 486 ~~v~~~~~l~~~ 497 (613)
+++.+.+++++.
T Consensus 158 ~~~~~~~~~~~~ 169 (170)
T cd01465 158 AYIDNLAEARKV 169 (170)
T ss_pred EEeCCHHHHHhh
Confidence 999999888754
No 8
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.88 E-value=1.8e-21 Score=181.60 Aligned_cols=153 Identities=28% Similarity=0.429 Sum_probs=125.5
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcc
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTN 406 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~ 406 (613)
.+++||||.||||.+.|++.+|+++..+++.|+++++++|+.|+++++.+.++.. .+..+...+.+++. .+.++|+|+
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~~~-~~~~~~~~~~~~i~-~~~~~g~T~ 78 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPLRR-MTAKGKRSAKRVVD-GLQAGGGTN 78 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCCcc-cCHHHHHHHHHHHH-hccCCCCcc
Confidence 3789999999999999999999999999999999999999999999888776542 34445566667776 678899999
Q ss_pred hHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcE
Q 007207 407 ICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY 484 (613)
Q Consensus 407 l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~ 484 (613)
++.||..|.+.+.... +..+.|||+|||.+++... +. .....++.+|+||+|...+...|+.||+.++|.
T Consensus 79 ~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~----~~----~~~~~~v~v~~igig~~~~~~~l~~iA~~t~G~ 150 (155)
T cd01466 79 VVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAV----VL----RADNAPIPIHTFGLGASHDPALLAFIAEITGGT 150 (155)
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchh----hh----cccCCCceEEEEecCCCCCHHHHHHHHhccCce
Confidence 9999999999986532 3356899999999866411 11 112346899999999888999999999999999
Q ss_pred EEEcC
Q 007207 485 YGAAY 489 (613)
Q Consensus 485 ~~~v~ 489 (613)
|+++.
T Consensus 151 ~~~~~ 155 (155)
T cd01466 151 FSYVK 155 (155)
T ss_pred EEEeC
Confidence 99873
No 9
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.85 E-value=1.3e-20 Score=183.18 Aligned_cols=169 Identities=18% Similarity=0.289 Sum_probs=125.8
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCC----
Q 007207 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFI---- 400 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~---- 400 (613)
+++||||+||||.+.+++.+|+++..+++.|.. +++++|+.|++++..+.++... ...+...++..|. .+.
T Consensus 2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~~~~ 79 (198)
T cd01470 2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDF-NSNDADDVIKRLE-DFNYDDH 79 (198)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccC-CCCCHHHHHHHHH-hCCcccc
Confidence 799999999999999999999999999998863 7899999999999887766432 2222334444443 222
Q ss_pred -CCCCcchHHHHHHHHHHHhcC--------CCCccEEEEEecCCcCch---hHHHHHHHHHHHcC------CCCCceEEE
Q 007207 401 -AGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVEDE---RQICDAMKSRLTNG------GSICPRIYT 462 (613)
Q Consensus 401 -~~GgT~l~~aL~~A~~~l~~~--------~~~~~~IillTDG~~~~~---~~~~~~~~~~~~~~------~~~~~~i~t 462 (613)
.+|||+++.||+.+.+.+... ....+.|||||||.++.. ....+.+++.+... ...+++||+
T Consensus 80 ~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 159 (198)
T cd01470 80 GDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYV 159 (198)
T ss_pred cCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEE
Confidence 458999999999998876311 123568999999998642 22334444433221 234589999
Q ss_pred EEecCCCCHHHHHHHHHhcCc--EEEEcCCCcHHHHHH
Q 007207 463 FGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQM 498 (613)
Q Consensus 463 igiG~~~~~~~L~~lA~~~gG--~~~~v~~~~~l~~~l 498 (613)
||+|.+.|...|+.||..++| +++.+.+.++|.+.+
T Consensus 160 iGvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~~v~ 197 (198)
T cd01470 160 FGVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEVF 197 (198)
T ss_pred EecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHHHhc
Confidence 999999999999999999998 578888888776653
No 10
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.85 E-value=2.8e-20 Score=181.98 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=124.6
Q ss_pred CCCCCceEEEEEeCCCCCC------CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcce------eee---cccccc---
Q 007207 322 RKVFKKDVIFIVDISGSMQ------GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETY------LFS---TSMELA--- 383 (613)
Q Consensus 322 ~~~~~~~vvfviD~SgSM~------g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~------~~~---~~~~~~--- 383 (613)
....+.+++||||+||||. +.|++.+|+++..+++.++++++|+|+.|++... ... +.+...
T Consensus 16 ~~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~ 95 (206)
T cd01456 16 EPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGF 95 (206)
T ss_pred ccCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCC
Confidence 3556899999999999998 5799999999999999999999999999999532 111 111110
Q ss_pred CHHHHHHHHHHHhhcCC-CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcC-CCCCceEE
Q 007207 384 TKEAVERAHQWIGINFI-AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNG-GSICPRIY 461 (613)
Q Consensus 384 ~~~~~~~a~~~i~~~~~-~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 461 (613)
...+...+.+.|+ .+. ++|+|++..+|+.|.+.+. .+..+.|||+|||..++.....+.+.+..+.. ...+++||
T Consensus 96 ~~~~~~~l~~~i~-~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 172 (206)
T cd01456 96 PSAQRSALDAALN-SLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVN 172 (206)
T ss_pred CcccHHHHHHHHH-hhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEE
Confidence 0023344444554 555 8999999999999999985 34447999999999876544444444443321 12458999
Q ss_pred EEEecCCCCHHHHHHHHHhcCcEE-EEcCCC
Q 007207 462 TFGIGSYCNHYFLRMLAMISRGYY-GAAYDL 491 (613)
Q Consensus 462 tigiG~~~~~~~L~~lA~~~gG~~-~~v~~~ 491 (613)
+||+|.+.+..+|+.||+.++|.| +.+.+.
T Consensus 173 ~igiG~~~~~~~l~~iA~~tgG~~~~~~~~~ 203 (206)
T cd01456 173 VIDFGGDADRAELEAIAEATGGTYAYNQSDL 203 (206)
T ss_pred EEEecCcccHHHHHHHHHhcCCeEecccccc
Confidence 999999999999999999999999 665543
No 11
>PRK13685 hypothetical protein; Provisional
Probab=99.83 E-value=2.6e-19 Score=187.06 Aligned_cols=172 Identities=19% Similarity=0.253 Sum_probs=135.8
Q ss_pred CCCceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc
Q 007207 324 VFKKDVIFIVDISGSMQG-----KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN 398 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~ 398 (613)
..+.+++||+|+||||.+ +|++.+|+++..+++.++++++++++.|++++....|.+. +.+.+..+++ .
T Consensus 86 ~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t~--d~~~l~~~l~----~ 159 (326)
T PRK13685 86 RNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPTT--NREATKNAID----K 159 (326)
T ss_pred CCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCCC--CHHHHHHHHH----h
Confidence 346789999999999986 5899999999999999988999999999999988877654 6777776666 4
Q ss_pred CCCCCCcchHHHHHHHHHHHhcC--------CCCccEEEEEecCCcCchh------HHHHHHHHHHHcCCCCCceEEEEE
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVEDER------QICDAMKSRLTNGGSICPRIYTFG 464 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~--------~~~~~~IillTDG~~~~~~------~~~~~~~~~~~~~~~~~~~i~tig 464 (613)
+.++|+|+++.+|..|++.+... ....+.||++|||..+.+. ..... .+.++ +.+++||+||
T Consensus 160 l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~a-a~~a~---~~gi~i~~Ig 235 (326)
T PRK13685 160 LQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTA-ARTAK---DQGVPISTIS 235 (326)
T ss_pred CCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHH-HHHHH---HcCCeEEEEE
Confidence 56789999999999999987631 2235689999999976432 11122 22222 2358999999
Q ss_pred ecCC--------------CCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHh
Q 007207 465 IGSY--------------CNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG 505 (613)
Q Consensus 465 iG~~--------------~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~ 505 (613)
+|.. .|...|++||+.+||.|+++.+.+++.+.+.++-+.+
T Consensus 236 ~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~if~~I~~~~ 290 (326)
T PRK13685 236 FGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRAVYATLQQQI 290 (326)
T ss_pred ECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 9974 4788999999999999999999888887777765543
No 12
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.82 E-value=9.4e-19 Score=197.85 Aligned_cols=171 Identities=21% Similarity=0.251 Sum_probs=130.1
Q ss_pred CCCCCceEEEEEeCCCCCCC-CcHHHHHHHHHHHHH-hCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 322 RKVFKKDVIFIVDISGSMQG-KPLEDTKNALAVALS-KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 322 ~~~~~~~vvfviD~SgSM~g-~~~~~ak~al~~~l~-~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
.+...+.++||||+||||.+ +++..+|+|+..++. .++++|+++||.|++.+....++....+....+.....+. .
T Consensus 300 lq~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L~--~ 377 (863)
T TIGR00868 300 LKIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANLP--T 377 (863)
T ss_pred cccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhhc--c
Confidence 34566789999999999986 589999999998764 5778999999999999988777654334444444444443 4
Q ss_pred CCCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207 400 IAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l 477 (613)
.++|||+|+.||..|++.+.+.. ...+.|||||||..+........ +++ .+++||+||+|.+.+. .|+.|
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~~~~l~~----lk~---~gVtI~TIg~G~dad~-~L~~I 449 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTISSCFEE----VKQ---SGAIIHTIALGPSAAK-ELEEL 449 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCHHHHHHH----HHH---cCCEEEEEEeCCChHH-HHHHH
Confidence 58899999999999999997653 24579999999998765433322 222 3589999999998665 58999
Q ss_pred HHhcCcEEEEcCCCcHH---HHHHHHHH
Q 007207 478 AMISRGYYGAAYDLDSI---EIQMQKLF 502 (613)
Q Consensus 478 A~~~gG~~~~v~~~~~l---~~~l~~~~ 502 (613)
|+.+||.++++.+..++ .++|.++.
T Consensus 450 A~~TGG~~f~asd~~dl~~L~dAF~~is 477 (863)
T TIGR00868 450 SDMTGGLRFYASDQADNNGLIDAFGALS 477 (863)
T ss_pred HHhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 99999999999886654 44444443
No 13
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.81 E-value=1.2e-18 Score=166.50 Aligned_cols=161 Identities=25% Similarity=0.292 Sum_probs=126.2
Q ss_pred CceEEEEEeCCCCCCCC------cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 326 KKDVIFIVDISGSMQGK------PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~------~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
+.+++||||+|+||... +++.++.++..++... ++++++++.|++......+.+. +...+.++++.+. ..
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~~--~~~~~~~~l~~l~-~~ 77 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLTL--DRESLKELLEDIK-IG 77 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCCc--cHHHHHHHHHHhh-hc
Confidence 57899999999999743 6789999998888654 6899999999998877666543 5666777777665 44
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecC-----------C
Q 007207 400 IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS-----------Y 468 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~-----------~ 468 (613)
..+|+|+++.||..+++.+.......+.|||+|||..+..........+.+++ .+++||+||+|. +
T Consensus 78 ~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~---~gi~i~~i~ig~~~~~~~~~~~~~ 154 (180)
T cd01467 78 LAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKN---KGVRIYTIGVGKSGSGPKPDGSTI 154 (180)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHH---CCCEEEEEEecCCCCCcCCCCccc
Confidence 56899999999999999997665566899999999876542222222333322 348999999998 4
Q ss_pred CCHHHHHHHHHhcCcEEEEcCCCcH
Q 007207 469 CNHYFLRMLAMISRGYYGAAYDLDS 493 (613)
Q Consensus 469 ~~~~~L~~lA~~~gG~~~~v~~~~~ 493 (613)
.+...|+.||+.++|.|+++.+.++
T Consensus 155 ~~~~~l~~la~~tgG~~~~~~~~~~ 179 (180)
T cd01467 155 LDEDSLVEIADKTGGRIFRALDGFE 179 (180)
T ss_pred CCHHHHHHHHHhcCCEEEEecCccc
Confidence 6889999999999999999988764
No 14
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.81 E-value=6.6e-19 Score=169.41 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=123.3
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---------CCCCeEEEEEeCCcceeeecccc-ccCHHHHHHHHHH
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---------DPGDSFNIVAFNGETYLFSTSME-LATKEAVERAHQW 394 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---------~~~d~~~Ii~F~~~~~~~~~~~~-~~~~~~~~~a~~~ 394 (613)
+|.|++||||.|+||.+.+++.+|++++.+++.| +.+++++|+.|++.+....++.. ..+...+.++++.
T Consensus 1 c~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~~~~~~~l~~~i~~ 80 (186)
T cd01480 1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSLKEAVDN 80 (186)
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccccCCHHHHHHHHHh
Confidence 5789999999999999999999999999998888 23689999999999988777653 2456666666664
Q ss_pred HhhcCCCCCCcchHHHHHHHHHHHhc--CCCCccEEEEEecCCcCch--hHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207 395 IGINFIAGGSTNICAPLTKAVEMLTN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (613)
Q Consensus 395 i~~~~~~~GgT~l~~aL~~A~~~l~~--~~~~~~~IillTDG~~~~~--~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~ 470 (613)
+. ..+|+|+++.||..|.+.+.. .++..+.|||+|||..+.. ....+.+ +.++ ..++.||+||+|. .|
T Consensus 81 l~---~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~-~~~~---~~gi~i~~vgig~-~~ 152 (186)
T cd01480 81 LE---YIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAV-NEAD---HLGIKIFFVAVGS-QN 152 (186)
T ss_pred Cc---cCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHH-HHHH---HCCCEEEEEecCc-cc
Confidence 42 358999999999999999874 3456789999999987432 2222222 2233 2358999999999 78
Q ss_pred HHHHHHHHHhcCcEEEEcCCCcHH
Q 007207 471 HYFLRMLAMISRGYYGAAYDLDSI 494 (613)
Q Consensus 471 ~~~L~~lA~~~gG~~~~v~~~~~l 494 (613)
...|+.||..+++.|+ ..+..++
T Consensus 153 ~~~L~~IA~~~~~~~~-~~~~~~l 175 (186)
T cd01480 153 EEPLSRIACDGKSALY-RENFAEL 175 (186)
T ss_pred hHHHHHHHcCCcchhh-hcchhhh
Confidence 8999999999988744 4444433
No 15
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.81 E-value=1.2e-18 Score=166.59 Aligned_cols=163 Identities=16% Similarity=0.235 Sum_probs=125.5
Q ss_pred ceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHhC---CCCCeEEEEEe-CCcceeeeccccccCHHHHHHHHHHHhh
Q 007207 327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSKL---DPGDSFNIVAF-NGETYLFSTSMELATKEAVERAHQWIGI 397 (613)
Q Consensus 327 ~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~L---~~~d~~~Ii~F-~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 397 (613)
++++|+||.|+||.. +|++.+|.++..|++.+ .+++++++++| ++.++...|++. +.+.+...++.+
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~--D~~~~~~~L~~~-- 79 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTG--NPRKHIQALKTA-- 79 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCC--CHHHHHHHhhcc--
Confidence 689999999999985 59999999999999864 57899999999 788999988866 555444444322
Q ss_pred cCCCCCCcchHHHHHHHHHHHhcCCC--CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207 398 NFIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (613)
Q Consensus 398 ~~~~~GgT~l~~aL~~A~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~ 475 (613)
....|||+++.||..|++.+...+. ..+.|||+|||...+.....+ +.+.+++ .+++||+||+|. +..+|+
T Consensus 80 -~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~-~~~~l~~---~~I~v~~IgiG~--~~~~L~ 152 (183)
T cd01453 80 -RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYE-TIDKLKK---ENIRVSVIGLSA--EMHICK 152 (183)
T ss_pred -cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHH-HHHHHHH---cCcEEEEEEech--HHHHHH
Confidence 3567889999999999999975332 245788889987655443333 3333333 248999999996 456899
Q ss_pred HHHHhcCcEEEEcCCCcHHHHHHHH
Q 007207 476 MLAMISRGYYGAAYDLDSIEIQMQK 500 (613)
Q Consensus 476 ~lA~~~gG~~~~v~~~~~l~~~l~~ 500 (613)
.||+.+||.|+.+.+.+++.+.+.+
T Consensus 153 ~ia~~tgG~~~~~~~~~~l~~~~~~ 177 (183)
T cd01453 153 EICKATNGTYKVILDETHLKELLLE 177 (183)
T ss_pred HHHHHhCCeeEeeCCHHHHHHHHHh
Confidence 9999999999999988777665554
No 16
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.80 E-value=2e-18 Score=162.86 Aligned_cols=165 Identities=32% Similarity=0.484 Sum_probs=128.1
Q ss_pred eEEEEEeCCCCCCCC-----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 328 DVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 328 ~vvfviD~SgSM~g~-----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
|++||+|.||||.+. +++.++.++..+++.++ +++|+|+.|++......+.+ .+...+.++++.+.......
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~~t--~~~~~~~~~l~~~~~~~~~~ 77 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSPLT--SDKDELKNALNKLSPQGMPG 77 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEEEE--SSHHHHHHHHHTHHHHG--S
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEeccccccccccc--ccHHHHHHHhhcccccccCc
Confidence 689999999999976 69999999999999875 77999999999988777765 48888888888877555678
Q ss_pred CCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC-HHHHHHHHHhc
Q 007207 403 GSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN-HYFLRMLAMIS 481 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~-~~~L~~lA~~~ 481 (613)
|+|++..||..|.+++.......+.||++|||.++... .+.++. +++ .++++|+|++|...+ ...|+.||+.+
T Consensus 78 ~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~~--~~~~~~-~~~---~~i~i~~v~~~~~~~~~~~l~~la~~t 151 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNSSD--IEAAKA-LKQ---QGITIYTVGIGSDSDANEFLQRLAEAT 151 (172)
T ss_dssp SS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCHH--HHHHHH-HHC---TTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcch--hHHHHH-HHH---cCCeEEEEEECCCccHHHHHHHHHHhc
Confidence 99999999999999998765567899999999876322 233333 332 348999999998765 48999999999
Q ss_pred CcEEEEc-CCCcHHHHHHHHH
Q 007207 482 RGYYGAA-YDLDSIEIQMQKL 501 (613)
Q Consensus 482 gG~~~~v-~~~~~l~~~l~~~ 501 (613)
||.|+.+ .+.+++.+.|+++
T Consensus 152 gG~~~~~~~~~~~l~~~~~~I 172 (172)
T PF13519_consen 152 GGRYFHVDNDPEDLDDAFQQI 172 (172)
T ss_dssp EEEEEEE-SSSHHHHHHHHH-
T ss_pred CCEEEEecCCHHHHHHHHhcC
Confidence 9999999 6788888777653
No 17
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.80 E-value=4e-18 Score=163.85 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=128.3
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L-~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G 403 (613)
.+.|++||||.||||.+. +...++.++.+++.+ .+++||+|+.|+++++...+++. ....+.++++.+. .+.++|
T Consensus 3 ~~~Dvv~llD~SgSm~~~-~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~--~~~~~~~~l~~l~-~~~~~g 78 (185)
T cd01474 3 GHFDLYFVLDKSGSVAAN-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTD--DSSAIIKGLEVLK-KVTPSG 78 (185)
T ss_pred CceeEEEEEeCcCchhhh-HHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccc--cHHHHHHHHHHHh-ccCCCC
Confidence 467999999999999874 444556677776654 46799999999999998888765 3335566666665 566789
Q ss_pred CcchHHHHHHHHHHHhcC-C-C--CccEEEEEecCCcCc--hhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207 404 STNICAPLTKAVEMLTNS-R-G--SIPIIFLVTDGAVED--ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (613)
Q Consensus 404 gT~l~~aL~~A~~~l~~~-~-~--~~~~IillTDG~~~~--~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l 477 (613)
+|+++.||+.|.+.+... . + ..+.|||+|||..++ ........ +.+++ .++.||+||+| +.+...|+.|
T Consensus 79 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a-~~l~~---~gv~i~~vgv~-~~~~~~L~~i 153 (185)
T cd01474 79 QTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEA-KLSRK---LGAIVYCVGVT-DFLKSQLINI 153 (185)
T ss_pred CCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHH-HHHHH---cCCEEEEEeec-hhhHHHHHHH
Confidence 999999999999877421 1 1 237899999999842 22222222 22322 34899999995 4688999999
Q ss_pred HHhcCcEEEEcCCCcHHHHHHHHHHHHhccc
Q 007207 478 AMISRGYYGAAYDLDSIEIQMQKLFTRGFSS 508 (613)
Q Consensus 478 A~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p 508 (613)
|..+++.|....+.++|...+.++.+++|..
T Consensus 154 A~~~~~~f~~~~~~~~l~~~~~~~~~~~C~~ 184 (185)
T cd01474 154 ADSKEYVFPVTSGFQALSGIIESVVKKACIE 184 (185)
T ss_pred hCCCCeeEecCccHHHHHHHHHHHHHhhccC
Confidence 9987654445667889999999998888763
No 18
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.80 E-value=2.5e-18 Score=164.19 Aligned_cols=156 Identities=24% Similarity=0.333 Sum_probs=117.1
Q ss_pred EEEEEeCCCCCCCC-cHHHHHHHHHHHHHh-CCCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207 329 VIFIVDISGSMQGK-PLEDTKNALAVALSK-LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (613)
Q Consensus 329 vvfviD~SgSM~g~-~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT 405 (613)
++||||+||||.+. +++.+|.++..++.. +.++++++|+.|+++ .....+.+. +...+. ..+. .+..+|+|
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~--~~~~~~---~~l~-~l~~~G~T 76 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTR--SVELAK---RRLA-RLPTGGGT 76 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCC--CHHHHH---HHHH-hCCCCCCC
Confidence 78999999999976 999999999999864 567999999999875 555555433 444443 4454 56779999
Q ss_pred chHHHHHHHHHHH-hc--CCCCccEEEEEecCCcCchhH----HHHHHHHHHHcCCCCCceEEEEEecCC-CCHHHHHHH
Q 007207 406 NICAPLTKAVEML-TN--SRGSIPIIFLVTDGAVEDERQ----ICDAMKSRLTNGGSICPRIYTFGIGSY-CNHYFLRML 477 (613)
Q Consensus 406 ~l~~aL~~A~~~l-~~--~~~~~~~IillTDG~~~~~~~----~~~~~~~~~~~~~~~~~~i~tigiG~~-~~~~~L~~l 477 (613)
++..+|..|++.+ .. ..+..+.|||+|||..+.... ....+.+.+. ..++.+++|++|.+ .+..+|+.|
T Consensus 77 ~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~---~~gi~v~~I~~~~~~~~~~~l~~i 153 (178)
T cd01451 77 PLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLR---ARGISALVIDTEGRPVRRGLAKDL 153 (178)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHH---hcCCcEEEEeCCCCccCccHHHHH
Confidence 9999999999988 22 123357999999999864221 2122333333 23478999999864 578899999
Q ss_pred HHhcCcEEEEcCCCcH
Q 007207 478 AMISRGYYGAAYDLDS 493 (613)
Q Consensus 478 A~~~gG~~~~v~~~~~ 493 (613)
|+.+||.|+++.+.+.
T Consensus 154 A~~tgG~~~~~~d~~~ 169 (178)
T cd01451 154 ARALGGQYVRLPDLSA 169 (178)
T ss_pred HHHcCCeEEEcCcCCH
Confidence 9999999999988764
No 19
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.78 E-value=7.3e-18 Score=158.78 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=120.9
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G 403 (613)
.|++||||.||||.+.+++.+|+++..++..|. .+++++|+.|++++....++....+.+.+.++++.+. ..+|
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~g 77 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLR---YIGG 77 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCCHHHHHHHHHhCc---CCCC
Confidence 479999999999999899999999999998885 4679999999999988877765456666666666443 2378
Q ss_pred CcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHH
Q 007207 404 STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478 (613)
Q Consensus 404 gT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA 478 (613)
+|+++.||..|.+.+.. .++..+.|||+|||.+++.. ..... .+++ .++++|+||+|.. +...|+.||
T Consensus 78 ~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~--~~~~~-~l~~---~gv~i~~ig~g~~-~~~~L~~ia 150 (164)
T cd01472 78 GTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV--EEPAV-ELKQ---AGIEVFAVGVKNA-DEEELKQIA 150 (164)
T ss_pred CchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH--HHHHH-HHHH---CCCEEEEEECCcC-CHHHHHHHH
Confidence 89999999999998875 23557789999999876543 22222 2222 3589999999987 999999999
Q ss_pred HhcCcEEEEcC
Q 007207 479 MISRGYYGAAY 489 (613)
Q Consensus 479 ~~~gG~~~~v~ 489 (613)
..++|.|.+..
T Consensus 151 ~~~~~~~~~~~ 161 (164)
T cd01472 151 SDPKELYVFNV 161 (164)
T ss_pred CCCchheEEec
Confidence 99998777643
No 20
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.78 E-value=3.4e-18 Score=162.97 Aligned_cols=143 Identities=22% Similarity=0.340 Sum_probs=109.8
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC------CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP------GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~------~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
..+++||||+||||.+.+++.+|+++..+++.+.+ +++++|+.|+++++...+++.. .+ ..+. .+
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~~---~~-----~~~~-~l 73 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPL---ES-----FQPP-RL 73 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCccH---Hh-----cCCC-cc
Confidence 45799999999999999999999999999988864 4689999999999887776431 11 1122 56
Q ss_pred CCCCCcchHHHHHHHHHHHhcCC---------CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207 400 IAGGSTNICAPLTKAVEMLTNSR---------GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~~~---------~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~ 470 (613)
.++|||+++.||..|++.+.... ...+.|||+|||.+++...... +.+++....+++|++||+|.+.|
T Consensus 74 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~---~~~~~~~~~~~~i~~igiG~~~~ 150 (176)
T cd01464 74 TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAI---ERIKEARDSKGRIVACAVGPKAD 150 (176)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHH---HHHHhhcccCCcEEEEEeccccC
Confidence 78899999999999999985421 2246899999999876543221 22222233358999999999999
Q ss_pred HHHHHHHHHh
Q 007207 471 HYFLRMLAMI 480 (613)
Q Consensus 471 ~~~L~~lA~~ 480 (613)
..+|+.||..
T Consensus 151 ~~~L~~ia~~ 160 (176)
T cd01464 151 LDTLKQITEG 160 (176)
T ss_pred HHHHHHHHCC
Confidence 9999999863
No 21
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=99.78 E-value=1.2e-17 Score=174.43 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=87.0
Q ss_pred ccccccceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEE---EEeecccccc
Q 007207 83 LIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHT---QLIALGENDG 159 (613)
Q Consensus 83 ~~pL~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g---~v~ek~~A~~ 159 (613)
.+-|.+..|+|+|.+ .+|+|+++|+|+| ++++++||.|.||||++|+|++|+|.++|++..+ +++||++||+
T Consensus 413 aV~L~Sh~VtVeIeg--~iA~TEIEqTF~N---PN~r~LEGElsFPLPEgAtVTGyALdvdGkL~Daw~~VVVEKEKARQ 487 (952)
T TIGR02921 413 KVLIANMAITVEEHG--DNADIEIVETLEN---QTPENHEVFFHFSLPEEAAITGLWLGDDAKDDDKFAFALAPRGAAQK 487 (952)
T ss_pred ceeEeeeeEEEEEEC--CeEEEEEEEEEEC---CCCCceeEEEEecCCCCCeeeeeeecCCccccccccceeccHHHHHH
Confidence 344555666666666 8899999999999 7999999999999999999999999999999988 9999999995
Q ss_pred --ccccccc--ccCCcc---cCCeeEEecCCCCCC
Q 007207 160 --AGKSASV--ETGSFL---KPNIFTLTLPQIDGG 187 (613)
Q Consensus 160 --~~~~~~~--~~~~ll---~~n~F~~~V~ni~p~ 187 (613)
+.+++++ .|++|+ .+|.|.+||+||||.
T Consensus 488 VYEdevRQGrpiDPALLEK~~gN~FriRVYPIPPr 522 (952)
T TIGR02921 488 VYNDEVQQERPIDPALLEQVGPRHYRLRAFPIPPR 522 (952)
T ss_pred HHHHHHHhcCCCCchhheeccCCeeeEEEccCCcc
Confidence 4456666 699998 589999999999994
No 22
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.77 E-value=1.1e-17 Score=160.99 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=126.2
Q ss_pred ceEEEEEeCCCCCCCCc-HHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhhcCC
Q 007207 327 KDVIFIVDISGSMQGKP-LEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGINFI 400 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~-~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~~~ 400 (613)
.||+||||.||||.+.. ++.+|+++..+++.+. ++.+++|+.|++.+....++... .+...+..+++.+.....
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~ 80 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYY 80 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcC
Confidence 37999999999999887 9999999999999875 46799999999999887765442 234444446665543446
Q ss_pred CCCCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207 401 AGGSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (613)
Q Consensus 401 ~~GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~ 476 (613)
.+|+|++..||..|.+.+.. +++..+.|||+|||.+++........++ +++ .++.+++||+|.+.|..+|+.
T Consensus 81 ~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~-l~~---~gv~v~~igiG~~~d~~~l~~ 156 (186)
T cd01471 81 PNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARK-LRE---RGVIIAVLGVGQGVNHEENRS 156 (186)
T ss_pred CCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHH-HHH---CCCEEEEEEeehhhCHHHHHH
Confidence 78999999999999998865 2344578999999998766544444433 322 348899999999999999999
Q ss_pred HHHhc--C--cEEEEcCCCcHHHHHHH
Q 007207 477 LAMIS--R--GYYGAAYDLDSIEIQMQ 499 (613)
Q Consensus 477 lA~~~--g--G~~~~v~~~~~l~~~l~ 499 (613)
||... . ...+...+.+++...++
T Consensus 157 ia~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (186)
T cd01471 157 LVGCDPDDSPCPLYLQSSWSEVQNVIK 183 (186)
T ss_pred hcCCCCCCCCCCeeecCCHHHHHHHhh
Confidence 99865 1 23444455666665544
No 23
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.77 E-value=1.7e-17 Score=171.51 Aligned_cols=176 Identities=20% Similarity=0.227 Sum_probs=136.2
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh-CCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc-----
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN----- 398 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~----- 398 (613)
.|.+++||||+||||.+ ++..+++++..+++. ++++++++|+.|++++..+.+++. +...+.++++.+...
T Consensus 52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t~--~~~~l~~~l~~l~~~~~~~~ 128 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFTS--DPRLLEAALNRLKPPLRTDY 128 (296)
T ss_pred CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCCC--CHHHHHHHHHhccCCCcccc
Confidence 47899999999999986 699999999999987 788999999999999888777654 677777777765410
Q ss_pred ------CCCCCCcchHHHHHHHH-HHHhcCCC---CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 007207 399 ------FIAGGSTNICAPLTKAV-EMLTNSRG---SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY 468 (613)
Q Consensus 399 ------~~~~GgT~l~~aL~~A~-~~l~~~~~---~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~ 468 (613)
..++|+|+++.||..|. +++....+ ..+.||++|||..+........+.+.+++ .++.||+||+|..
T Consensus 129 ~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~---~~v~vy~I~~~~~ 205 (296)
T TIGR03436 129 NSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQR---ADVAIYSIDARGL 205 (296)
T ss_pred ccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHH---cCCEEEEeccCcc
Confidence 12389999999987665 44433221 35789999999987654444444444433 3489999999842
Q ss_pred -------------CCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207 469 -------------CNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFS 507 (613)
Q Consensus 469 -------------~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~ 507 (613)
.+...|+.||+.|||.++++ +.+++...+.++.+.+.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~ 256 (296)
T TIGR03436 206 RAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRS 256 (296)
T ss_pred ccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhh
Confidence 25689999999999999998 888999999888887765
No 24
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.77 E-value=1.4e-17 Score=165.02 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=135.3
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
|.|++||||.|+||.+.+++.+|+++..+++.|. ..++|+|+.|+++++..+++....+...+.++++.+. ..+
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i~~i~---~~~ 78 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRME---YLE 78 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHHHhCc---CCC
Confidence 6799999999999999999999999999999885 3679999999999998888876667778888887664 346
Q ss_pred CCcchHHHHHHHHHHHhc-----CCCC---ccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207 403 GSTNICAPLTKAVEMLTN-----SRGS---IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~-----~~~~---~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L 474 (613)
|+|+++.||..+++.+.. +++. .+.+||+|||..++. +... .+.+++ .++.||+||+|. .+...|
T Consensus 79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~--~~~~-a~~lk~---~gv~i~~VgvG~-~~~~~L 151 (224)
T cd01475 79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD--VSEV-AAKARA---LGIEMFAVGVGR-ADEEEL 151 (224)
T ss_pred CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc--HHHH-HHHHHH---CCcEEEEEeCCc-CCHHHH
Confidence 899999999999876432 1222 578999999997653 2222 223332 348999999998 488999
Q ss_pred HHHHHhcC-cEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207 475 RMLAMISR-GYYGAAYDLDSIEIQMQKLFTRGFS 507 (613)
Q Consensus 475 ~~lA~~~g-G~~~~v~~~~~l~~~l~~~~~~~~~ 507 (613)
+.||..++ ++++.+.+.+++.....++...++.
T Consensus 152 ~~ias~~~~~~~f~~~~~~~l~~~~~~l~~~~C~ 185 (224)
T cd01475 152 REIASEPLADHVFYVEDFSTIEELTKKFQGKICV 185 (224)
T ss_pred HHHhCCCcHhcEEEeCCHHHHHHHhhhcccccCc
Confidence 99998765 5778888888888877777777765
No 25
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.76 E-value=2e-17 Score=157.83 Aligned_cols=161 Identities=22% Similarity=0.283 Sum_probs=125.5
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS 404 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg 404 (613)
|++||||.|+||.+..++.+|+.+..+++.+.. +.||+|+.|++++....++....+...+.++++.+. ..+|+
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~---~~~g~ 78 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHIS---QLLGL 78 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHHHHhCc---cCCCC
Confidence 799999999999988999999999999998864 689999999999988888776666677766666443 35788
Q ss_pred cchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----HHHHH
Q 007207 405 TNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HYFLR 475 (613)
Q Consensus 405 T~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----~~~L~ 475 (613)
|+++.||..|.+.+.. +++..+.+||+|||..++.... ..+.+.+++ .++.+|+||+|...+ ...|+
T Consensus 79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~-~~~~~~~k~---~gv~v~~Vgvg~~~~~~~~~~~L~ 154 (177)
T cd01469 79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLL-KDVIPQAER---EGIIRYAIGVGGHFQRENSREELK 154 (177)
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcccc-HHHHHHHHH---CCcEEEEEEecccccccccHHHHH
Confidence 9999999999988632 2345779999999998765433 223333332 358999999998654 68899
Q ss_pred HHHHhcCc-EEEEcCCCcHHH
Q 007207 476 MLAMISRG-YYGAAYDLDSIE 495 (613)
Q Consensus 476 ~lA~~~gG-~~~~v~~~~~l~ 495 (613)
.||..+++ +++.+.+.++|.
T Consensus 155 ~ias~p~~~h~f~~~~~~~l~ 175 (177)
T cd01469 155 TIASKPPEEHFFNVTDFAALK 175 (177)
T ss_pred HHhcCCcHHhEEEecCHHHhc
Confidence 99998875 566677766553
No 26
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.76 E-value=2.5e-17 Score=158.49 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=120.1
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---------CCeEEEEEeCCcceeeeccccccCHHHHHHHHH
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---------GDSFNIVAFNGETYLFSTSMELATKEAVERAHQ 393 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---------~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~ 393 (613)
...+.|++||||.|+||...+++.+|+.+..++..+.. ++|++||.|+++++..+++....+...+.++++
T Consensus 16 ~~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~ 95 (193)
T cd01477 16 KNLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQ 95 (193)
T ss_pred ccceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHH
Confidence 44679999999999999988999999999988776542 479999999999999998876556677777666
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCch-hHHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207 394 WIGINFIAGGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDE-RQICDAMKSRLTNGGSICPRIYTFGIGS 467 (613)
Q Consensus 394 ~i~~~~~~~GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~-~~~~~~~~~~~~~~~~~~~~i~tigiG~ 467 (613)
........+|||+++.||..|.+.+... ++..+++||||||..+.. ..... +.+.+++ .++.||+||+|.
T Consensus 96 ~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~-~a~~l~~---~GI~i~tVGiG~ 171 (193)
T cd01477 96 GSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRP-IAARLKS---TGIAIITVAFTQ 171 (193)
T ss_pred HHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHH-HHHHHHH---CCCEEEEEEeCC
Confidence 4211344678999999999999998642 234678999999865432 22222 2333333 359999999999
Q ss_pred CCCHHHHHHHHHhcCcEE
Q 007207 468 YCNHYFLRMLAMISRGYY 485 (613)
Q Consensus 468 ~~~~~~L~~lA~~~gG~~ 485 (613)
+.|...+++|++...+.|
T Consensus 172 ~~d~~~~~~L~~ias~~~ 189 (193)
T cd01477 172 DESSNLLDKLGKIASPGM 189 (193)
T ss_pred CCCHHHHHHHHHhcCCCC
Confidence 988888888887665443
No 27
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.74 E-value=1.6e-16 Score=153.15 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=129.8
Q ss_pred eEEEEEeCCCCCCCCcHH-HHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhhcCCC
Q 007207 328 DVIFIVDISGSMQGKPLE-DTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~-~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~~~~ 401 (613)
|++|+||.|+||....+. .++..++.+++.+. .+.||+|+.|++.++...++... .+.+.+.++++.+......
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~ 81 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRS 81 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCC
Confidence 799999999999877777 47899999998876 36899999999999887776542 3556677777766533345
Q ss_pred CCCcchHHHHHHHHHHHhcCC----CCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207 402 GGSTNICAPLTKAVEMLTNSR----GSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~~~----~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~ 476 (613)
+|+|+++.||+.|.+.+.... +..+.+||||||..++.. .......+.+++ .++.+|+||+|.. +...|+.
T Consensus 82 ~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~---~gV~i~~vGiG~~-~~~el~~ 157 (192)
T cd01473 82 GGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKE---ENVKLLVVGVGAA-SENKLKL 157 (192)
T ss_pred CCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHH---CCCEEEEEEeccc-cHHHHHH
Confidence 899999999999999885432 236789999999987532 122222333333 3599999999985 7788999
Q ss_pred HHHhc--C--cEEEEcCCCcHHHHHHHHHHHHhc
Q 007207 477 LAMIS--R--GYYGAAYDLDSIEIQMQKLFTRGF 506 (613)
Q Consensus 477 lA~~~--g--G~~~~v~~~~~l~~~l~~~~~~~~ 506 (613)
||... . ..+++..+.++|......+.+++|
T Consensus 158 ia~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~iC 191 (192)
T cd01473 158 LAGCDINNDNCPNVIKTEWNNLNGISKFLTDKIC 191 (192)
T ss_pred hcCCCCCCCCCCeEEecchhhHHHHHHHHHhhcc
Confidence 99762 2 224444458888888888877766
No 28
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.74 E-value=1.6e-16 Score=170.84 Aligned_cols=184 Identities=19% Similarity=0.230 Sum_probs=142.0
Q ss_pred CCceEEEEEeCCCCCCCCcH-HHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhc
Q 007207 325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN 398 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~-~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~ 398 (613)
...+++||||.|+||.-..+ +.+|.++..++..+.. ..+++++.|++.++.++++.... +...+..++..+...
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~ 120 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKT 120 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhh
Confidence 57899999999999975444 7899999999988853 34566699999998877765432 444566666655545
Q ss_pred CCCCCCcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~ 475 (613)
...+|+|++..||..+.+.+... .+..+.|||||||..++.......++ .++. .++.|++||||.+.+..+|+
T Consensus 121 ~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq-~LR~---~GVeI~vIGVG~g~n~e~Lr 196 (576)
T PTZ00441 121 YLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESR-KLKD---RNVKLAVIGIGQGINHQFNR 196 (576)
T ss_pred ccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHH-HHHH---CCCEEEEEEeCCCcCHHHHH
Confidence 66789999999999999988643 34467999999999865444444333 3333 34899999999999999999
Q ss_pred HHHH----hcCcEEEEcCCCcHHHHHHHHHHHHhccceeee
Q 007207 476 MLAM----ISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLAN 512 (613)
Q Consensus 476 ~lA~----~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~ 512 (613)
.||. .++|.|+...+.+++...+..+++++|..+-++
T Consensus 197 lIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~eve~~ 237 (576)
T PTZ00441 197 LLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEVERT 237 (576)
T ss_pred HHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhccccccc
Confidence 9993 466788888999999999999999999877443
No 29
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.72 E-value=2.9e-16 Score=147.88 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=115.1
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS 404 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg 404 (613)
|++||+|.|+||.+..++.+|+++..+++.+. ++++|+|+.|++++....++....+.+.+.++++.+ ...+|+
T Consensus 2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~~~~~l~~~l~~~---~~~~g~ 78 (164)
T cd01482 2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNL---PYKGGN 78 (164)
T ss_pred CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCCCHHHHHHHHHhC---cCCCCC
Confidence 79999999999998899999999999998774 578999999999998877765545555555555533 246899
Q ss_pred cchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207 405 TNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479 (613)
Q Consensus 405 T~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~ 479 (613)
|+++.||..+.+.+.. +++..+.||++|||.+++.. . .+.+.+++ .++.+|+||+|. .+...|++||.
T Consensus 79 T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~~--~-~~a~~lk~---~gi~i~~ig~g~-~~~~~L~~ia~ 151 (164)
T cd01482 79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDV--E-LPARVLRN---LGVNVFAVGVKD-ADESELKMIAS 151 (164)
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCchH--H-HHHHHHHH---CCCEEEEEecCc-CCHHHHHHHhC
Confidence 9999999999876532 23456789999999986532 1 22233332 358999999997 47889999999
Q ss_pred hcCcE-EEEcC
Q 007207 480 ISRGY-YGAAY 489 (613)
Q Consensus 480 ~~gG~-~~~v~ 489 (613)
.+... .+.+.
T Consensus 152 ~~~~~~~~~~~ 162 (164)
T cd01482 152 KPSETHVFNVA 162 (164)
T ss_pred CCchheEEEcC
Confidence 87654 44444
No 30
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.70 E-value=4.2e-16 Score=145.47 Aligned_cols=150 Identities=22% Similarity=0.320 Sum_probs=116.7
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC-C
Q 007207 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG-G 403 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~-G 403 (613)
|++||||+||||.+.+++.+++++..++..+. ++++++|+.|++......+.....+...+.+.++.+. ... |
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~ 78 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLK---YLGGG 78 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCCCHHHHHHHHHhcc---cCCCC
Confidence 79999999999998899999999999998876 3889999999999887776655334555555555432 223 4
Q ss_pred CcchHHHHHHHHHHHhcCC----CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207 404 STNICAPLTKAVEMLTNSR----GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479 (613)
Q Consensus 404 gT~l~~aL~~A~~~l~~~~----~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~ 479 (613)
+|++..||..+.+.+.... +..+.+||+|||.+++.....+.++. +++ .++++++||+|. .+...|+.||.
T Consensus 79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~-~~~---~~v~v~~i~~g~-~~~~~l~~la~ 153 (161)
T cd01450 79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAK-LKD---EGIKVFVVGVGP-ADEEELREIAS 153 (161)
T ss_pred CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHH-HHH---CCCEEEEEeccc-cCHHHHHHHhC
Confidence 9999999999999987653 56779999999998775434343333 332 248999999999 79999999999
Q ss_pred hcCcEE
Q 007207 480 ISRGYY 485 (613)
Q Consensus 480 ~~gG~~ 485 (613)
.+++.|
T Consensus 154 ~~~~~~ 159 (161)
T cd01450 154 CPSERH 159 (161)
T ss_pred CCCCCc
Confidence 884443
No 31
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.70 E-value=7.3e-16 Score=145.12 Aligned_cols=169 Identities=19% Similarity=0.163 Sum_probs=118.1
Q ss_pred ceEEEEEeCCCCCC------C---CcHHHHHHHHHHHHH--hCCCCCeEEEEEeCCcceeeecccc----ccCH---HHH
Q 007207 327 KDVIFIVDISGSMQ------G---KPLEDTKNALAVALS--KLDPGDSFNIVAFNGETYLFSTSME----LATK---EAV 388 (613)
Q Consensus 327 ~~vvfviD~SgSM~------g---~~~~~ak~al~~~l~--~L~~~d~~~Ii~F~~~~~~~~~~~~----~~~~---~~~ 388 (613)
+.+++++|.||||. | ++++.+|..+..|.+ .-+.+|+++ |++......+.+. ..+. +.+
T Consensus 1 ~~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 1 KRLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred CceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHH
Confidence 46899999999992 2 478888888777763 334688888 3444332222111 1123 345
Q ss_pred HHHHHHHhhcCCCCCCcchHHHHHHHHHHHh-cCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEec
Q 007207 389 ERAHQWIGINFIAGGSTNICAPLTKAVEMLT-NSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIG 466 (613)
Q Consensus 389 ~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~-~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG 466 (613)
...++..+ --.++.+|. .||..|++.+. +.+...+.|||+|||..+... ...+......+ ..+++|||||||
T Consensus 78 ~~~l~~~q-~g~ag~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~---~~gV~iytIgiG 151 (191)
T cd01455 78 KMMHAHSQ-FCWSGDHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAR---EPNVNAFVIFIG 151 (191)
T ss_pred HHHHHhcc-cCccCccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHH---hCCCEEEEEEec
Confidence 55555443 223455676 99999999997 777778899999999975443 22221122222 235999999999
Q ss_pred CCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHh
Q 007207 467 SYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG 505 (613)
Q Consensus 467 ~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~ 505 (613)
.. +.+.|+.+|+.+||.||.+.+.++|++.+++++...
T Consensus 152 ~~-d~~~l~~iA~~tgG~~F~A~d~~~L~~iy~~I~~~~ 189 (191)
T cd01455 152 SL-SDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTST 189 (191)
T ss_pred CC-CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHHHHHHh
Confidence 85 778899999999999999999999988888877643
No 32
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.69 E-value=5.5e-16 Score=147.34 Aligned_cols=167 Identities=27% Similarity=0.346 Sum_probs=127.8
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS 404 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg 404 (613)
||+||||.|+||.+..++.+|+++..+++.+ ..+.+|+++.|++......++....+...+...+ .......+|+
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~g~ 78 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAI--NDSIPSSGGG 78 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHH--HTTGGCCBSS
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccc--cccccccchh
Confidence 7999999999999889999999999999965 3588999999999999887776655666666666 1224567899
Q ss_pred cchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207 405 TNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479 (613)
Q Consensus 405 T~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~ 479 (613)
|++..||+.|.+.+... ++..+.+|++|||.+++.............. .++.+++||+ ...+...|+.||.
T Consensus 79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~i~~~~ig~-~~~~~~~l~~la~ 154 (178)
T PF00092_consen 79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS---NGIKVIAIGI-DNADNEELRELAS 154 (178)
T ss_dssp B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH---CTEEEEEEEE-SCCHHHHHHHHSH
T ss_pred hhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh---cCcEEEEEec-CcCCHHHHHHHhC
Confidence 99999999999998654 4567899999999998775444444433332 2356666666 3679999999997
Q ss_pred hc--CcEEEEcCCCcHHHHHHHH
Q 007207 480 IS--RGYYGAAYDLDSIEIQMQK 500 (613)
Q Consensus 480 ~~--gG~~~~v~~~~~l~~~l~~ 500 (613)
.+ .+.++++.+..++.+..++
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~ 177 (178)
T PF00092_consen 155 CPTSEGHVFYLADFSDLSQIIQQ 177 (178)
T ss_dssp SSTCHHHEEEESSHHHHHHHHHH
T ss_pred CCCCCCcEEEcCCHHHHHHHHhc
Confidence 64 4778888988888766654
No 33
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.69 E-value=8.1e-16 Score=142.89 Aligned_cols=145 Identities=23% Similarity=0.247 Sum_probs=107.5
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT 405 (613)
++++|+||+||||.+.++..++.++..++..+. .+++++++.|+++.... +.. ...++.++++++. .+.++|||
T Consensus 1 ~~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~-~~~---~~~~~~~~~~~l~-~~~~~ggT 75 (152)
T cd01462 1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTK-IVD---KTDDLEEPVEFLS-GVQLGGGT 75 (152)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEE-ecC---CcccHHHHHHHHh-cCCCCCCc
Confidence 479999999999999899999999988887766 48899999999983322 221 3445666777775 56789999
Q ss_pred chHHHHHHHHHHHhcCCCCccEEEEEecCCc-CchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207 406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (613)
Q Consensus 406 ~l~~aL~~A~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~ 480 (613)
++..||..+++.+.........||++|||.. ....... ......+ ..+++||+||+|++.|..+++..|+.
T Consensus 76 ~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~~~~~~-~~~~~~~---~~~~~v~~~~~g~~~~~~~~~~~~~~ 147 (152)
T cd01462 76 DINKALRYALELIERRDPRKADIVLITDGYEGGVSDELL-REVELKR---SRVARFVALALGDHGNPGYDRISAED 147 (152)
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCHHHH-HHHHHHH---hcCcEEEEEEecCCCCchHHHHhhhh
Confidence 9999999999998765444679999999963 3333332 1222222 22489999999999888766655543
No 34
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.68 E-value=5.4e-16 Score=147.55 Aligned_cols=148 Identities=19% Similarity=0.307 Sum_probs=104.2
Q ss_pred eEEEEEeCCCCCCC-CcHHHHHHHHHHHHHhCCC-CCeEEEEEeCCcc--e---eeeccccccCHHHHHHHHHHHhhcCC
Q 007207 328 DVIFIVDISGSMQG-KPLEDTKNALAVALSKLDP-GDSFNIVAFNGET--Y---LFSTSMELATKEAVERAHQWIGINFI 400 (613)
Q Consensus 328 ~vvfviD~SgSM~g-~~~~~ak~al~~~l~~L~~-~d~~~Ii~F~~~~--~---~~~~~~~~~~~~~~~~a~~~i~~~~~ 400 (613)
.++||||+||||.+ .+++.+|+++..++..+.. +++|+|+.|++.+ . .+... ...+......+.+.+. .+.
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~ 79 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKI-KDFDESLHERARKRLA-ALS 79 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEe-cCcccccchhHHHHHH-ccC
Confidence 47899999999998 5999999999999888875 9999999999873 2 12111 1122221123444554 567
Q ss_pred CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhH------HHHHHHHHHHcCCCCCceEEEEEecCCCC---H
Q 007207 401 AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQ------ICDAMKSRLTNGGSICPRIYTFGIGSYCN---H 471 (613)
Q Consensus 401 ~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~------~~~~~~~~~~~~~~~~~~i~tigiG~~~~---~ 471 (613)
++|+|+++.||..+.+.+...+...+.||++|||.+++... ......+...+....++++|+||+|++.. .
T Consensus 80 ~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~~~~ 159 (174)
T cd01454 80 PGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATTVDK 159 (174)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccccchH
Confidence 78899999999999999987666778999999999875321 12222111222223469999999999876 4
Q ss_pred HHHHHH
Q 007207 472 YFLRML 477 (613)
Q Consensus 472 ~~L~~l 477 (613)
+.++.|
T Consensus 160 ~~~~~~ 165 (174)
T cd01454 160 EYLKNI 165 (174)
T ss_pred HHHHHh
Confidence 455544
No 35
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.67 E-value=1.5e-15 Score=168.17 Aligned_cols=161 Identities=24% Similarity=0.287 Sum_probs=124.5
Q ss_pred CCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh-CCCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 322 RKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 322 ~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
....+..++||||+||||.+.+|..+|.++..++.. +.+.|+|+||.|+++ ++...+.+. ++..+..+|. .+
T Consensus 397 ~~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~-----~~~~~~~~L~-~l 470 (584)
T PRK13406 397 KQRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTR-----SLVRAKRSLA-GL 470 (584)
T ss_pred hccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCc-----CHHHHHHHHh-cC
Confidence 345678999999999999999999999999999865 678999999999765 777666543 4445566676 78
Q ss_pred CCCCCcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchh----------HHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207 400 IAGGSTNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDER----------QICDAMKSRLTNGGSICPRIYTFGIGS 467 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~----------~~~~~~~~~~~~~~~~~~~i~tigiG~ 467 (613)
..+|||+|+.||..|++.+... ++..+.|||||||..+... .-...+...+ ...++++++|++|.
T Consensus 471 ~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~---~~~gi~~~vId~g~ 547 (584)
T PRK13406 471 PGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARAL---RAAGLPALVIDTSP 547 (584)
T ss_pred CCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHH---HhcCCeEEEEecCC
Confidence 8999999999999999987643 3446899999999986421 1111122222 23458899999997
Q ss_pred CCCHHHHHHHHHhcCcEEEEcCCCc
Q 007207 468 YCNHYFLRMLAMISRGYYGAAYDLD 492 (613)
Q Consensus 468 ~~~~~~L~~lA~~~gG~~~~v~~~~ 492 (613)
.. ..+++.||+.+||.|+.+.+.+
T Consensus 548 ~~-~~~~~~LA~~~gg~y~~l~~~~ 571 (584)
T PRK13406 548 RP-QPQARALAEAMGARYLPLPRAD 571 (584)
T ss_pred CC-cHHHHHHHHhcCCeEEECCCCC
Confidence 63 4579999999999999998764
No 36
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.67 E-value=2e-15 Score=141.94 Aligned_cols=148 Identities=18% Similarity=0.277 Sum_probs=109.5
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCC--cceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNG--ETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~--~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
|++|++|.|+||.+ .++..++.+..++..+.. .++++++.|++ ......++....+...+.++++.+. ..+
T Consensus 2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~---~~g 77 (163)
T cd01476 2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLR---FIG 77 (163)
T ss_pred CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCc---cCC
Confidence 79999999999986 688889999999988764 89999999999 5555555544445556666665332 347
Q ss_pred CCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC--CCHHHHHH
Q 007207 403 GSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY--CNHYFLRM 476 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~--~~~~~L~~ 476 (613)
|+|+++.||..|.+.+.. +++..+.+|++|||..++... . ..+.+++ ..++.+|+||+|+. .|...|+.
T Consensus 78 g~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~--~-~~~~l~~--~~~v~v~~vg~g~~~~~~~~~L~~ 152 (163)
T cd01476 78 GTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPE--K-QARILRA--VPNIETFAVGTGDPGTVDTEELHS 152 (163)
T ss_pred CCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchH--H-HHHHHhh--cCCCEEEEEECCCccccCHHHHHH
Confidence 889999999999999852 223457899999998865421 1 1222322 24589999999998 88899999
Q ss_pred HHHhcCcE
Q 007207 477 LAMISRGY 484 (613)
Q Consensus 477 lA~~~gG~ 484 (613)
||......
T Consensus 153 ia~~~~~~ 160 (163)
T cd01476 153 ITGNEDHI 160 (163)
T ss_pred HhCCCccc
Confidence 98765543
No 37
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.64 E-value=4.4e-15 Score=143.60 Aligned_cols=166 Identities=20% Similarity=0.238 Sum_probs=126.0
Q ss_pred CCCCceEEEEEeCCCCCCCC-cHHHHHHHHHHHHHh-CCCCCeEEEEEeC-CcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 323 KVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSK-LDPGDSFNIVAFN-GETYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~-~~~~ak~al~~~l~~-L~~~d~~~Ii~F~-~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
.....-|+||+|.||||... +|..+|-++..+|.. ....|++++|.|. ++++++.+.+. ++..+.++|. .+
T Consensus 75 ~r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~-----sv~~~~~~L~-~l 148 (261)
T COG1240 75 GRAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTS-----SVELAERALE-RL 148 (261)
T ss_pred cCcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcc-----cHHHHHHHHH-hC
Confidence 44567899999999999987 899999999998854 5679999999999 56788777654 3455666676 78
Q ss_pred CCCCCcchHHHHHHHHHHHhcCC----CCccEEEEEecCCcCchh--HHHHHHHHHHHcCCCCCceEEEEEecC-CCCHH
Q 007207 400 IAGGSTNICAPLTKAVEMLTNSR----GSIPIIFLVTDGAVEDER--QICDAMKSRLTNGGSICPRIYTFGIGS-YCNHY 472 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~~~----~~~~~IillTDG~~~~~~--~~~~~~~~~~~~~~~~~~~i~tigiG~-~~~~~ 472 (613)
.++|+|+|..||..|++.+.... ...+.+|+||||..+... .+..............++.+.+|.+.. .....
T Consensus 149 ~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g 228 (261)
T COG1240 149 PTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLG 228 (261)
T ss_pred CCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcccccc
Confidence 99999999999999999987543 467799999999986432 222333333323333456677777643 34557
Q ss_pred HHHHHHHhcCcEEEEcCCCcHH
Q 007207 473 FLRMLAMISRGYYGAAYDLDSI 494 (613)
Q Consensus 473 ~L~~lA~~~gG~~~~v~~~~~l 494 (613)
+.+.||...||.|+++.+..+.
T Consensus 229 ~~~~iA~~~Gg~~~~L~~l~~~ 250 (261)
T COG1240 229 LAEEIARASGGEYYHLDDLSDD 250 (261)
T ss_pred HHHHHHHHhCCeEEecccccch
Confidence 8999999999999999987654
No 38
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.62 E-value=3.5e-14 Score=134.45 Aligned_cols=156 Identities=28% Similarity=0.403 Sum_probs=121.1
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
|.+++||+|.|+||.+.+++.++.++..++..+.. +++++|+.|++....+.+.....+...+...++.+.. ...
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ 78 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLNDSRSKDALLEALASLSY--KLG 78 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEcccccCCHHHHHHHHHhcCC--CCC
Confidence 47899999999999988999999999999998876 8999999999988777665323355555555553320 158
Q ss_pred CCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207 403 GSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l 477 (613)
|+|++..+|..+.+.+... .+..+.|+++|||.+++.......+....+ .++.++.||+|...+...|+.|
T Consensus 79 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~----~~i~i~~i~~~~~~~~~~l~~~ 154 (177)
T smart00327 79 GGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR----SGVKVFVVGVGNDVDEEELKKL 154 (177)
T ss_pred CCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH----CCCEEEEEEccCccCHHHHHHH
Confidence 9999999999999987521 122568999999998865344444444322 2389999999987799999999
Q ss_pred HHhcCcEEEE
Q 007207 478 AMISRGYYGA 487 (613)
Q Consensus 478 A~~~gG~~~~ 487 (613)
+..++|.|.+
T Consensus 155 ~~~~~~~~~~ 164 (177)
T smart00327 155 ASAPGGVYVF 164 (177)
T ss_pred hCCCcceEEe
Confidence 9999999876
No 39
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.60 E-value=4.9e-14 Score=132.60 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=115.1
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G 403 (613)
+|++|+||.|+||....++.+|+.+..+++.+. ...+|+++.|+++++..+++....+.+.+.++++.+. ...++
T Consensus 1 ~DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i~--~~~g~ 78 (165)
T cd01481 1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLR--LRGGS 78 (165)
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHHHHHHHHhcc--cCCCC
Confidence 489999999999988899999999999999886 3679999999999988877766667777777777553 12233
Q ss_pred CcchHHHHHHHHHHHhcC-------CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207 404 STNICAPLTKAVEMLTNS-------RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (613)
Q Consensus 404 gT~l~~aL~~A~~~l~~~-------~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~ 476 (613)
+|+++.||..+.+.+... ++.++.+|++|||..++.- .. ..+.+++ .++.+|+||+|. .|...|+.
T Consensus 79 ~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~--~~-~a~~lr~---~gv~i~~vG~~~-~~~~eL~~ 151 (165)
T cd01481 79 QLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDV--ER-PAVALKR---AGIVPFAIGARN-ADLAELQQ 151 (165)
T ss_pred cccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchH--HH-HHHHHHH---CCcEEEEEeCCc-CCHHHHHH
Confidence 689999999998765332 1235689999999987532 22 2233333 348899999984 68999999
Q ss_pred HHHhcCcEEEEcC
Q 007207 477 LAMISRGYYGAAY 489 (613)
Q Consensus 477 lA~~~gG~~~~v~ 489 (613)
||.... ..+.+.
T Consensus 152 ias~p~-~vf~v~ 163 (165)
T cd01481 152 IAFDPS-FVFQVS 163 (165)
T ss_pred HhCCCc-cEEEec
Confidence 998774 344333
No 40
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.60 E-value=4.6e-14 Score=130.54 Aligned_cols=150 Identities=30% Similarity=0.449 Sum_probs=119.4
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G 403 (613)
.+++|+||.|+||...+++.+++++..++..+.. .++++++.|++....+.+.....+.+.+.+.++.+. . ..+|
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 78 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALK-K-GLGG 78 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhcc-c-CCCC
Confidence 3689999999999777999999999999999886 899999999998887777655556677777777664 1 4789
Q ss_pred CcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhc
Q 007207 404 STNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMIS 481 (613)
Q Consensus 404 gT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~ 481 (613)
+|++..|+..+.+.+... ....+.+|++|||..++.........+.+++ .+++++.||+|...+...|+.|+..+
T Consensus 79 ~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~---~~v~v~~v~~g~~~~~~~l~~l~~~~ 155 (161)
T cd00198 79 GTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRK---LGITVYTIGIGDDANEDELKEIADKT 155 (161)
T ss_pred CccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHH---cCCEEEEEEcCCCCCHHHHHHHhccc
Confidence 999999999999998753 4567899999999987654222222233322 25899999999977899999999887
No 41
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.59 E-value=2.7e-14 Score=159.75 Aligned_cols=161 Identities=22% Similarity=0.282 Sum_probs=120.0
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh-CCCCCeEEEEEeCCcc-eeeeccccccCHHHHHHHHHHHhhcCC
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGINFI 400 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~~~~ 400 (613)
......++||||+||||.+.+|..+|.++..++.. +...|+|+||.|++.. ..+.+.+. +... +.+.|. .+.
T Consensus 404 ~~~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~--~~~~---~~~~L~-~l~ 477 (589)
T TIGR02031 404 RKSGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSR--SVEQ---AKRRLD-VLP 477 (589)
T ss_pred cccCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCC--CHHH---HHHHHh-cCC
Confidence 34567799999999999999999999999999875 4578999999998764 55555433 3333 445555 677
Q ss_pred CCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchh------------HHHHH---HHHHHHcCCCCCceEEEE
Q 007207 401 AGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDER------------QICDA---MKSRLTNGGSICPRIYTF 463 (613)
Q Consensus 401 ~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~------------~~~~~---~~~~~~~~~~~~~~i~ti 463 (613)
++|+|+++.||..|++.+.... ...+.|||+|||..+... ...+. +.+.+. ..++.+++|
T Consensus 478 ~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~gi~~~vi 554 (589)
T TIGR02031 478 GGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIR---EAGMPALVI 554 (589)
T ss_pred CCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHH---hcCCeEEEE
Confidence 8999999999999999986432 345689999999986311 11112 222232 334789999
Q ss_pred EecCCC-CHHHHHHHHHhcCcEEEEcCCCc
Q 007207 464 GIGSYC-NHYFLRMLAMISRGYYGAAYDLD 492 (613)
Q Consensus 464 giG~~~-~~~~L~~lA~~~gG~~~~v~~~~ 492 (613)
++|... +..+++.||+.++|.|+++.+.+
T Consensus 555 d~~~~~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 555 DTAMRFVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred eCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence 998763 45689999999999999998765
No 42
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.59 E-value=3.9e-14 Score=129.36 Aligned_cols=142 Identities=25% Similarity=0.390 Sum_probs=108.1
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC------CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP------GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~------~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
-++|++|+||||.|++|+..+..+..+++.|.. ...++||+|++.++...|++. +.++--..+.+
T Consensus 5 P~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~---------~~nF~~p~L~a 75 (207)
T COG4245 5 PCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTD---------AANFNPPILTA 75 (207)
T ss_pred CEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhh---------HhhcCCCceec
Confidence 489999999999999999999999999998863 456999999999988887643 22332245778
Q ss_pred CCCcchHHHHHHHHHHHhcC---------CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC-CCH
Q 007207 402 GGSTNICAPLTKAVEMLTNS---------RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-CNH 471 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~~---------~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~-~~~ 471 (613)
.|||.+++||+.|.+++... ...++.++|+|||+++|........... ..+...++..+++|.. +|.
T Consensus 76 ~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~---~~~~~k~v~a~~~G~~~ad~ 152 (207)
T COG4245 76 QGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQ---GERRAKSVAAFSVGVQGADN 152 (207)
T ss_pred CCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhh---cccccceEEEEEeccccccc
Confidence 89999999999999998653 2347899999999997765433222222 1222246777888866 788
Q ss_pred HHHHHHHHhc
Q 007207 472 YFLRMLAMIS 481 (613)
Q Consensus 472 ~~L~~lA~~~ 481 (613)
..|+++++.-
T Consensus 153 ~~L~qit~~V 162 (207)
T COG4245 153 KTLNQITEKV 162 (207)
T ss_pred HHHHHHHHhh
Confidence 8999998653
No 43
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=99.58 E-value=1.3e-14 Score=115.56 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=64.3
Q ss_pred cccccccceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEEEEeecc
Q 007207 82 SLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALG 155 (613)
Q Consensus 82 ~~~pL~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~ 155 (613)
..+||+..+|+..|.| ..|.+|++++|+| ++++++||.|+|||+|+++|+||++.|+||+++++|++|.
T Consensus 10 ~~LpL~~~~v~a~v~G--~~~~~ta~lty~N---~~~~plEg~f~fPL~e~~~V~gfea~i~gr~v~~~v~~rt 78 (78)
T PF13757_consen 10 NPLPLQSSRVTACVNG--YSAGTTASLTYEN---PEDRPLEGVFVFPLDEGATVVGFEADIGGRIVTVQVQDRT 78 (78)
T ss_pred CcceEEEeEEEEEEEc--ccccEEEEEEEEC---CCCCcEEEEEEEecCCCcEEEEEEEEeCCcEEEEEeeecC
Confidence 4589999999999999 5599999999999 7999999999999999999999999999999999999873
No 44
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-13 Score=158.64 Aligned_cols=186 Identities=24% Similarity=0.323 Sum_probs=158.9
Q ss_pred CCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeec----cccccCHHHHHHHHHHHh
Q 007207 321 SRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFST----SMELATKEAVERAHQWIG 396 (613)
Q Consensus 321 ~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~----~~~~~~~~~~~~a~~~i~ 396 (613)
.....|++++|++|.||||.|.++..+|..+..+|+.|.++|.|++++|++++....+ ...+++..+++...+.++
T Consensus 220 ~aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~ 299 (1104)
T KOG2353|consen 220 QAATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIE 299 (1104)
T ss_pred cccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHh
Confidence 4467899999999999999999999999999999999999999999999999876553 334678899999999997
Q ss_pred hcCCCCCCcchHHHHHHHHHHHhcCC---------CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207 397 INFIAGGSTNICAPLTKAVEMLTNSR---------GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS 467 (613)
Q Consensus 397 ~~~~~~GgT~l~~aL~~A~~~l~~~~---------~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~ 467 (613)
.+.+.|-++...|+..|+++|.... .....|+++|||.+++..++++... .....+|+||+-+|.
T Consensus 300 -~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn-----~~~~~Vrvftflig~ 373 (1104)
T KOG2353|consen 300 -TLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYN-----WPDKKVRVFTFLIGD 373 (1104)
T ss_pred -hhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhc-----cCCCceEEEEEEecc
Confidence 6779999999999999999997532 1356899999999988887776543 234569999999996
Q ss_pred CC-CHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeee
Q 007207 468 YC-NHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLAN 512 (613)
Q Consensus 468 ~~-~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~ 512 (613)
.. +...++.||..+.|.|+++.+.+++.......+.-++.|.+..
T Consensus 374 ~~~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~vl~ 419 (1104)
T KOG2353|consen 374 EVYDLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLVLQ 419 (1104)
T ss_pred cccccccchhhhhhCCCceEeccchhhcChHhhhhhhhhccceeec
Confidence 53 4456999999999999999999999999998888888888655
No 45
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.51 E-value=4e-13 Score=152.02 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=115.8
Q ss_pred CCCCceEEEEEeCCCCCCCC-cHHHHHHHHHHHHHh-CCCCCeEEEEEeCC-cceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 323 KVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSK-LDPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~-~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
......++||||.||||.+. ++..+|.++..++.. +..+|+|+||.|++ .+..+.+.+. +...+. ..|. .+
T Consensus 462 ~r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~--~~~~~~---~~L~-~l 535 (633)
T TIGR02442 462 GRAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTS--SVELAA---RRLE-EL 535 (633)
T ss_pred CCCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCC--CHHHHH---HHHH-hC
Confidence 44567899999999999874 899999999888754 56799999999986 4666666543 444333 4454 57
Q ss_pred CCCCCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCch---hHH---HHHHHHHHHcCCCCCceEEEEEecCC-
Q 007207 400 IAGGSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDE---RQI---CDAMKSRLTNGGSICPRIYTFGIGSY- 468 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~---~~~---~~~~~~~~~~~~~~~~~i~tigiG~~- 468 (613)
..+|+|++..||..|++.+.. .+...+.|||+|||..+.. ... ...+.+.+.+ .++.+++|+.+..
T Consensus 536 ~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~---~~i~~~vIdt~~~~ 612 (633)
T TIGR02442 536 PTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAA---RGILFVVIDTESGF 612 (633)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHh---cCCeEEEEeCCCCC
Confidence 789999999999999998872 3345679999999998652 111 1222233322 3477888877653
Q ss_pred CCHHHHHHHHHhcCcEEEEc
Q 007207 469 CNHYFLRMLAMISRGYYGAA 488 (613)
Q Consensus 469 ~~~~~L~~lA~~~gG~~~~v 488 (613)
....+++.||+.+||.|+.+
T Consensus 613 ~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 613 VRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred cchhHHHHHHHhhCCeEEec
Confidence 45689999999999999875
No 46
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.50 E-value=4.1e-13 Score=130.58 Aligned_cols=147 Identities=20% Similarity=0.275 Sum_probs=106.4
Q ss_pred CceEEEEEeCCCCCCCC-------cHHHHHHHHHHHHHhCC--CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHh
Q 007207 326 KKDVIFIVDISGSMQGK-------PLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG 396 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~-------~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~ 396 (613)
+++++|+||.||||... +++.+++++..++..+. +.++++++.|++....+.+. +...+.+++ .
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~~~----~~~~v~~~~---~ 74 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYDNV----NSSKVDQLF---A 74 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccCCc----CHHHHHHHH---h
Confidence 57999999999999853 79999999999887654 46789999999887554433 344444444 3
Q ss_pred hcCCCCCCcchHHHHHHHHHHHhcCC----C--CccEEEEEecCCcCchhHHHHHHHHHHHcC-CCCCceEEEEEecCC-
Q 007207 397 INFIAGGSTNICAPLTKAVEMLTNSR----G--SIPIIFLVTDGAVEDERQICDAMKSRLTNG-GSICPRIYTFGIGSY- 468 (613)
Q Consensus 397 ~~~~~~GgT~l~~aL~~A~~~l~~~~----~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~-~~~~~~i~tigiG~~- 468 (613)
.+.+.|+|++..+|..+++.+.... . ....||++|||.+++...+.+.+.+..++. ....+.+++|++|.+
T Consensus 75 -~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~ 153 (199)
T cd01457 75 -ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDP 153 (199)
T ss_pred -cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcH
Confidence 5667899999999999986443221 1 147899999999987666555554443321 113488999999986
Q ss_pred CCHHHHHHHHHh
Q 007207 469 CNHYFLRMLAMI 480 (613)
Q Consensus 469 ~~~~~L~~lA~~ 480 (613)
.+..+|+.|+..
T Consensus 154 ~~~~~L~~ld~~ 165 (199)
T cd01457 154 AATAFLKALDDQ 165 (199)
T ss_pred HHHHHHHHHhHH
Confidence 466789999864
No 47
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.39 E-value=3.3e-11 Score=114.48 Aligned_cols=155 Identities=13% Similarity=0.145 Sum_probs=113.9
Q ss_pred eEEEEEeCCCCCCC-----CcHHHHHHHHHHHHH---hCCCCCeEEEEEeCC-cceeeeccccccCHHHHHHHHHHHhhc
Q 007207 328 DVIFIVDISGSMQG-----KPLEDTKNALAVALS---KLDPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGIN 398 (613)
Q Consensus 328 ~vvfviD~SgSM~g-----~~~~~ak~al~~~l~---~L~~~d~~~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~~ 398 (613)
.++|+||.|.||.. .|++.+|+++..++. ...+.++++|+.|.+ .+....+.+. +...+..+++ .
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~--D~~~~~~~L~----~ 78 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTN--DQGKILSKLH----D 78 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCC--CHHHHHHHHH----h
Confidence 47899999999985 489999999998752 345688999999999 8888888866 6666666665 4
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCCC--C-ccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC-CCHHHH
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNSRG--S-IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-CNHYFL 474 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~~~--~-~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~-~~~~~L 474 (613)
+.++|+|++..||+.|...|...+. . .+.|+|++++...++..+.+.+++..+ .++++++||+|.. .|...|
T Consensus 79 i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk----~~I~v~vI~~G~~~~~~~~l 154 (187)
T cd01452 79 VQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKK----NNVSVDIINFGEIDDNTEKL 154 (187)
T ss_pred CCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHH----cCCeEEEEEeCCCCCCHHHH
Confidence 5568999999999999999976544 3 366777777755666665555554432 3499999999954 466777
Q ss_pred HHHHHhcC----cEEEEcCCCc
Q 007207 475 RMLAMISR----GYYGAAYDLD 492 (613)
Q Consensus 475 ~~lA~~~g----G~~~~v~~~~ 492 (613)
+.+.+.-+ -++..+....
T Consensus 155 ~~~~~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 155 TAFIDAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred HHHHHHhcCCCCceEEEeCCCC
Confidence 77766532 3455555544
No 48
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.35 E-value=6.3e-11 Score=112.19 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=115.1
Q ss_pred ceEEEEEeCCCCCCCC----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC---
Q 007207 327 KDVIFIVDISGSMQGK----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF--- 399 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~--- 399 (613)
..|++|||.||||++. ..+.+.+-+..+-.+|.++-.+-++.|+++.....+. +..+....++.+....
T Consensus 2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v----t~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV----TLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc----CHHHHHHHHHHHhcccccc
Confidence 3689999999999963 4555555555555678888889999999998775543 6666666666554222
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCC--CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207 400 IAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l 477 (613)
...|+|+...+|+.+++....... .+-.|+++|||.+++..++.+.+++. ....+-+--||||.+ +..+|+.|
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~a----s~~pifwqFVgiG~~-~f~fL~kL 152 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREA----SDEPIFWQFVGIGDS-NFGFLEKL 152 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhc----cCCCeeEEEEEecCC-cchHHHHh
Confidence 456899999999999998874322 25689999999999887777766655 334466778899987 58999999
Q ss_pred HHhcC-----cEEEEcCCCcHH
Q 007207 478 AMISR-----GYYGAAYDLDSI 494 (613)
Q Consensus 478 A~~~g-----G~~~~v~~~~~l 494 (613)
....| ..|+.+.+.+++
T Consensus 153 D~l~gR~vDNa~Ff~~~d~~~l 174 (200)
T PF10138_consen 153 DDLAGRVVDNAGFFAIDDIDEL 174 (200)
T ss_pred hccCCcccCCcCeEecCCcccC
Confidence 88422 225556665443
No 49
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=129.62 Aligned_cols=146 Identities=23% Similarity=0.267 Sum_probs=108.1
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHH-hCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALS-KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~-~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT 405 (613)
..|++|||.||||.|.+...||..+..++. .+..+-++.++.|++........ .-..++.++++++. ...+|||
T Consensus 273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~---~k~~~~~e~i~fL~--~~f~GGT 347 (437)
T COG2425 273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELY---EKKIDIEELIEFLS--YVFGGGT 347 (437)
T ss_pred CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeec---CCccCHHHHHHHHh--hhcCCCC
Confidence 779999999999999999999987777664 35677789999999944322211 12336788899885 4556669
Q ss_pred chHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhc
Q 007207 406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMIS 481 (613)
Q Consensus 406 ~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~ 481 (613)
|+..||..|++.+....-....+|+||||...-.++....+....+. ...++|+|.||.. +..-|.+++...
T Consensus 348 D~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~~~~~~~v~e~~k~---~~~rl~aV~I~~~-~~~~l~~Isd~~ 419 (437)
T COG2425 348 DITKALRSALEDLKSRELFKADIVVITDGEDERLDDFLRKVKELKKR---RNARLHAVLIGGY-GKPGLMRISDHI 419 (437)
T ss_pred ChHHHHHHHHHHhhcccccCCCEEEEeccHhhhhhHHHHHHHHHHHH---hhceEEEEEecCC-CCcccceeeeee
Confidence 99999999999998665555689999999975444455555554432 3478999999986 444566676654
No 50
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.29 E-value=1.6e-10 Score=115.72 Aligned_cols=172 Identities=14% Similarity=0.167 Sum_probs=116.8
Q ss_pred CCceEEEEEeCCCCCCCC-----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 325 FKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~-----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
.+-+|+|+||.|.||... +++ +|..+..++..+. .++++|+.|++++....|++...+. +.+.+.+....
T Consensus 59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Plt~d~~~---~a~~~~l~~~~ 133 (266)
T cd01460 59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPFDEQFSS---QSGPRILNQFT 133 (266)
T ss_pred cCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCCCCCchh---hHHHHHhCccc
Confidence 568899999999999753 344 7888888887775 6899999999999999998774443 45555555334
Q ss_pred CCCCCcchHHHHHHHHHHHhcCC----CC--ccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC-CH-
Q 007207 400 IAGGSTNICAPLTKAVEMLTNSR----GS--IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC-NH- 471 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~~~----~~--~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~-~~- 471 (613)
...+||++..+|..+.+.+.... .. .+.+|++|||...+.+.......+.+.+ .++.++.|++-+.. +.
T Consensus 134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e---~~i~l~~I~ld~~~~~~S 210 (266)
T cd01460 134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREARE---QNVFVVFIIIDNPDNKQS 210 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHH---cCCeEEEEEEcCCCCCCC
Confidence 56689999999999999987541 11 2899999999943222222222222322 24889999986541 11
Q ss_pred ---------------HHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHH
Q 007207 472 ---------------YFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTR 504 (613)
Q Consensus 472 ---------------~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~ 504 (613)
.+-+-+-..+--+|..+.|-++|++.+..++++
T Consensus 211 I~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~~~~~~lp~~l~~~lrq 258 (266)
T cd01460 211 ILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVRDLNQLPSVLSDALRQ 258 (266)
T ss_pred cccccccccCCCCccHHHHHHhcCCCCeEEEecChhHhHHHHHHHHHH
Confidence 122233344445567777777777776666554
No 51
>PRK10997 yieM hypothetical protein; Provisional
Probab=99.21 E-value=3e-10 Score=122.09 Aligned_cols=144 Identities=16% Similarity=0.165 Sum_probs=105.8
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHH-hCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALS-KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~-~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
...+..++++||+||||.|.+...||..+..+.. .+..+++++++.|++..... +.. ....+.++++++. . ..
T Consensus 320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~-~l~---~~~gl~~ll~fL~-~-~f 393 (487)
T PRK10997 320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY-ELT---GPDGLEQAIRFLS-Q-SF 393 (487)
T ss_pred CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee-ccC---CccCHHHHHHHHH-H-hc
Confidence 4567899999999999999888888875555543 56789999999999987653 221 3345677777775 2 35
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCc-hhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207 402 GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVED-ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~-~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~ 475 (613)
+|||++..+|+.+++.+....-....||++||+.... ..+..+.++...+. .+.++|++.+|...+..+++
T Consensus 394 ~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~---~~~rf~~l~i~~~~~p~l~~ 465 (487)
T PRK10997 394 RGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQ---HQHRFHAVAMSAHGKPGIMR 465 (487)
T ss_pred CCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHh---cCcEEEEEEeCCCCCchHHH
Confidence 8999999999999999875444456899999997643 34455555444322 24799999999866665543
No 52
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.11 E-value=1.7e-09 Score=106.81 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=97.5
Q ss_pred eEEEEEeCCCCCC-------CCcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcce----------eeeccccccCHHH
Q 007207 328 DVIFIVDISGSMQ-------GKPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY----------LFSTSMELATKEA 387 (613)
Q Consensus 328 ~vvfviD~SgSM~-------g~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~----------~~~~~~~~~~~~~ 387 (613)
.++|+||+|.||. ..+++.+++++..++.+ -.++|+++|+.|+++.. .+.+. ...+.+.
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l-~~~~~~~ 81 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDL-DTPGAER 81 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecC-CCCCHHH
Confidence 5899999999994 25899999999999987 47899999999999742 12222 2336666
Q ss_pred HHHHHHHHhhcCC-------CCCCcchHHHHHHHHHHHhc--CCCCccEEEEEecCCcCch--hHHHHHHHHHHHcCCCC
Q 007207 388 VERAHQWIGINFI-------AGGSTNICAPLTKAVEMLTN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSI 456 (613)
Q Consensus 388 ~~~a~~~i~~~~~-------~~GgT~l~~aL~~A~~~l~~--~~~~~~~IillTDG~~~~~--~~~~~~~~~~~~~~~~~ 456 (613)
++...+.+..... ..++|++..||..|.+++.. .....+.|||+|||..... ......+...+......
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 6666665542211 35789999999999999975 2334689999999986421 11112222222222334
Q ss_pred CceEEEEEecCCC
Q 007207 457 CPRIYTFGIGSYC 469 (613)
Q Consensus 457 ~~~i~tigiG~~~ 469 (613)
++.+++||+|...
T Consensus 162 gI~i~~i~i~~~~ 174 (218)
T cd01458 162 GIELELFPLSSPG 174 (218)
T ss_pred CcEEEEEecCCCC
Confidence 6999999998753
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=99.06 E-value=3.2e-09 Score=101.32 Aligned_cols=174 Identities=18% Similarity=0.277 Sum_probs=107.8
Q ss_pred CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC-CCeEEEEEeCCcce-------eeeccccccCHHHHHHHHHHH
Q 007207 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNIVAFNGETY-------LFSTSMELATKEAVERAHQWI 395 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~-~d~~~Ii~F~~~~~-------~~~~~~~~~~~~~~~~a~~~i 395 (613)
....-|.||||+||||.|.+++.|..++..+.+.|.. +..+-|+.|.+.+. .|...-.+..+..+.+....+
T Consensus 10 ~~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~v 89 (219)
T PF11775_consen 10 FRDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIV 89 (219)
T ss_pred cCCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHH
Confidence 3455688999999999999999887766666555543 77889999988742 121111111222222222221
Q ss_pred hhc---------------CCCC-CCcch-HHHHHHHHHHHhcCCCCccEEEEEecCCcCch-------hHH-HHHHHHHH
Q 007207 396 GIN---------------FIAG-GSTNI-CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE-------RQI-CDAMKSRL 450 (613)
Q Consensus 396 ~~~---------------~~~~-GgT~l-~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~-------~~~-~~~~~~~~ 450 (613)
.+. +..+ ..-|+ ++||.+|.+.|.+.+...+.++++|||.|.+. ... ...+++.+
T Consensus 90 yk~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi 169 (219)
T PF11775_consen 90 YKDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVI 169 (219)
T ss_pred HHhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHH
Confidence 100 1111 12222 78999999999888888999999999999632 222 22223333
Q ss_pred Hc-CCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207 451 TN-GGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGF 506 (613)
Q Consensus 451 ~~-~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~ 506 (613)
+. ....++.+..||||.++.+++ + .+..+.+.+++...+...+.++.
T Consensus 170 ~~ie~~~~Vel~aiGIg~D~~~yY-~--------~~~~i~~~e~l~~~~~~~l~~l~ 217 (219)
T PF11775_consen 170 AEIETRSDVELIAIGIGHDVSRYY-R--------RAVTIDDVEELGGALFEQLARLF 217 (219)
T ss_pred HHHhccCCcEEEEEEcCCCchhhc-c--------cceecCCHHHHHHHHHHHHHHHh
Confidence 22 122358899999998754422 1 34567888888888877776653
No 54
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=98.83 E-value=1.1e-07 Score=90.32 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=116.6
Q ss_pred EEeCCCCCCC-----CcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 332 IVDISGSMQG-----KPLEDTKNALAVALSKL---DPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 332 viD~SgSM~g-----~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
|||.|.+|.. +|+..+.+++..|+..+ +|-.+++|+...+. ++.+.++.. +.....+++..+. ...+.
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsg--n~~~h~~~L~~~~-~~~~~ 77 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSG--NPQEHIEALKKLR-KLEPS 77 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCC--CHHHHHHHHHHhc-cCCCC
Confidence 6899999985 47888888888887653 56779999999875 666666654 6777777777665 56789
Q ss_pred CCcchHHHHHHHHHHHhcCCC-CccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207 403 GSTNICAPLTKAVEMLTNSRG-SIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~~~~-~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~ 480 (613)
|...+..||+.|...|...+. ..|.|+++.-+..+ |+.++.+.+....+ .++|+.+||++. .-+.++.|++.
T Consensus 78 G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~----~~IrvsvI~laa--Ev~I~k~i~~~ 151 (193)
T PF04056_consen 78 GEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKK----ENIRVSVISLAA--EVYICKKICKE 151 (193)
T ss_pred CChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHH----cCCEEEEEEEhH--HHHHHHHHHHh
Confidence 999999999999999986543 24566666644333 44555555544432 249999999986 45789999999
Q ss_pred cCcEEEEcCCCcHHHHH
Q 007207 481 SRGYYGAAYDLDSIEIQ 497 (613)
Q Consensus 481 ~gG~~~~v~~~~~l~~~ 497 (613)
|||.|..+-|.+.+.+.
T Consensus 152 T~G~y~V~lde~H~~~l 168 (193)
T PF04056_consen 152 TGGTYGVILDEDHFKEL 168 (193)
T ss_pred hCCEEEEecCHHHHHHH
Confidence 99999998887665544
No 55
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.81 E-value=3.2e-08 Score=107.05 Aligned_cols=175 Identities=17% Similarity=0.242 Sum_probs=105.6
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCccee-------eeccccccCHHHHHH----
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYL-------FSTSMELATKEAVER---- 390 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~-------~~~~~~~~~~~~~~~---- 390 (613)
.....-|.|+||+||||.+.++..|..++..+.+.|. .+..+-|+.|.+.+.. |...-.+..+..+..
T Consensus 389 ~~~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hi 468 (600)
T TIGR01651 389 EFRDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHI 468 (600)
T ss_pred CCCCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhh
Confidence 3345678899999999999888877765555555554 3778999999986421 111111111111111
Q ss_pred -----------HHHHHhhcCC--CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh--------HHHHHHHHH
Q 007207 391 -----------AHQWIGINFI--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER--------QICDAMKSR 449 (613)
Q Consensus 391 -----------a~~~i~~~~~--~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~--------~~~~~~~~~ 449 (613)
+...+...+. ....-.=+.||.+|.+.|..++...+.+++||||.|.+.. -....++..
T Consensus 469 iyk~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~v 548 (600)
T TIGR01651 469 IYKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAV 548 (600)
T ss_pred hhhccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHH
Confidence 1110100000 0001111789999999999888889999999999986432 122223333
Q ss_pred HHcCCC-CCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207 450 LTNGGS-ICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGF 506 (613)
Q Consensus 450 ~~~~~~-~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~ 506 (613)
+..... .++.+..||||.++.+++ ..++.|.+.++|..+|.+.+..+.
T Consensus 549 i~~~e~~~~vel~aigIg~Dv~r~Y---------~~~v~i~~~~eL~~~~~~qLa~Lf 597 (600)
T TIGR01651 549 IEEIETRSPVELLAIGIGHDVTRYY---------RRAVTIVDAEELAGAMTEQLAALF 597 (600)
T ss_pred HHHHhccCCceEEEeeccccHHHHc---------cccceecCHHHHHHHHHHHHHHHh
Confidence 322222 358999999998854433 334578888888888877666553
No 56
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.78 E-value=9.3e-08 Score=94.44 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=79.1
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHh-hcCCC
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG-INFIA 401 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~~~~~ 401 (613)
+..+..+++|+|+||||.+- ...+-..+..+.... .++.++.|++....+.+.....+.. +++..+. .....
T Consensus 54 ~~~~~~lvvl~DvSGSM~~~-s~~~l~~~~~l~~~~---~~~~~f~F~~~l~~vT~~l~~~~~~---~~l~~~~~~~~~~ 126 (222)
T PF05762_consen 54 PRKPRRLVVLCDVSGSMAGY-SEFMLAFLYALQRQF---RRVRVFVFSTRLTEVTPLLRRRDPE---EALARLSALVQSF 126 (222)
T ss_pred cCCCccEEEEEeCCCChHHH-HHHHHHHHHHHHHhC---CCEEEEEEeeehhhhhhhhccCCHH---HHHHHHHhhccCC
Confidence 34556999999999999752 122222333333333 3899999999876554433322332 2233221 12347
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCc-CchhHHHHHHHHHHHcCCCCCceEEEEE
Q 007207 402 GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFG 464 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~~~~~~~~~~~~~~~i~tig 464 (613)
+|||+++.+|..+.+.+....-....+|++|||.. ++.....+.+.+...+ +.+++.+.
T Consensus 127 ~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r----~~rviwLn 186 (222)
T PF05762_consen 127 GGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR----GRRVIWLN 186 (222)
T ss_pred CCccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh----CCEEEEEC
Confidence 89999999999999987632224568999999954 4444445555444322 24565553
No 57
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.58 E-value=2.1e-07 Score=83.22 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=68.7
Q ss_pred EEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcchH
Q 007207 329 VIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNIC 408 (613)
Q Consensus 329 vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l~ 408 (613)
++++||+||||..+.+.+....+..+++.. +.++.|+.|+...+....... .......+ ....+|||++.
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~~~------~~~~~~~~--~~~GgGGTdf~ 70 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVFRS------LEDELRDI--KLKGGGGTDFR 70 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEEec------cccccccc--ccCCCCCCcch
Confidence 578999999998777777777777777766 557999999998876543221 11222222 35678999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEecCCcCc
Q 007207 409 APLTKAVEMLTNSRGSIPIIFLVTDGAVED 438 (613)
Q Consensus 409 ~aL~~A~~~l~~~~~~~~~IillTDG~~~~ 438 (613)
.+++.+.+. ......+|++|||....
T Consensus 71 pvf~~~~~~----~~~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 71 PVFEYLEEN----RPRPSVVIYFTDGEGWP 96 (126)
T ss_pred HHHHHHHhc----CCCCCEEEEEeCCCCCC
Confidence 999988764 22356788999998643
No 58
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.51 E-value=2.4e-06 Score=87.58 Aligned_cols=159 Identities=25% Similarity=0.331 Sum_probs=111.7
Q ss_pred CCCceEEEEEeCCCCCC--C--CcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 324 VFKKDVIFIVDISGSMQ--G--KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~--g--~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
.....+++++|||-||. | .++.+..-|+..++..--++|.+.+|.|+..++.+. ... +. .+
T Consensus 461 rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v~-------v~e-------Lt-~l 525 (652)
T COG4867 461 RTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTVT-------AAE-------LT-GL 525 (652)
T ss_pred hcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhcccC-------HHH-------Hh-cC
Confidence 45567899999999997 3 356666667777776666899999999999876531 111 11 12
Q ss_pred C--CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC------c-----------hhHHHHHHHHHHHcCCCCCceE
Q 007207 400 I--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE------D-----------ERQICDAMKSRLTNGGSICPRI 460 (613)
Q Consensus 400 ~--~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~------~-----------~~~~~~~~~~~~~~~~~~~~~i 460 (613)
. ..-|||+..||..|-..+...++..++|+++|||+++ + +..+...++. +.+....++.+
T Consensus 526 ~~v~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~-~d~~~r~G~q~ 604 (652)
T COG4867 526 AGVYEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRG-FDDMARLGAQV 604 (652)
T ss_pred CCccccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHH-HHHHHhcccee
Confidence 2 2358999999999999998877788899999999984 1 1222333332 22333345677
Q ss_pred EEEEecCCCC-HHHHHHHHHhcCcEEEEcCCCcHHHHHHH
Q 007207 461 YTFGIGSYCN-HYFLRMLAMISRGYYGAAYDLDSIEIQMQ 499 (613)
Q Consensus 461 ~tigiG~~~~-~~~L~~lA~~~gG~~~~v~~~~~l~~~l~ 499 (613)
.+|-+|.+.. ..|++++|+..+|..++ .+.+.+-..+.
T Consensus 605 t~FrLg~DpgL~~Fv~qva~rv~G~vv~-pdldglGaaVv 643 (652)
T COG4867 605 TIFRLGSDPGLARFIDQVARRVQGRVVV-PDLDGLGAAVV 643 (652)
T ss_pred eEEeecCCHhHHHHHHHHHHHhCCeEEe-cCcchhhHHHH
Confidence 8888887544 36999999999999876 56666655443
No 59
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=98.46 E-value=5.1e-07 Score=95.26 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=118.7
Q ss_pred CCceEEEEEeCCCCCCCCcHHH-------HHHHHHHHHHhCC-CCCeEEEEEeCCcceeeec--cccccCHHHHHHHHHH
Q 007207 325 FKKDVIFIVDISGSMQGKPLED-------TKNALAVALSKLD-PGDSFNIVAFNGETYLFST--SMELATKEAVERAHQW 394 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~-------ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~--~~~~~~~~~~~~a~~~ 394 (613)
....+.+++|+|.||.. +++. -+++++.+-..+. -++...+..|.+..+.|.- ....++...-...-..
T Consensus 445 ~Dla~TLLvD~S~St~a-~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~R 523 (637)
T COG4548 445 HDLAFTLLVDVSASTDA-KMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPR 523 (637)
T ss_pred ccceeEEEeecccchHH-HhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchh
Confidence 45668899999999974 4444 4444444433332 3788889999888765432 1222233222233334
Q ss_pred HhhcCCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-----HHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 007207 395 IGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-----QICDAMKSRLTNGGSICPRIYTFGIGSYC 469 (613)
Q Consensus 395 i~~~~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-----~~~~~~~~~~~~~~~~~~~i~tigiG~~~ 469 (613)
|. .+.++-.|.++.||+.|.+.|...+...+.+|++|||.+++-. .-+....+++....+.++.+|.|-+..+.
T Consensus 524 Im-ALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea 602 (637)
T COG4548 524 IM-ALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDREA 602 (637)
T ss_pred he-ecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecchh
Confidence 44 6788899999999999999998888889999999999997432 12222333333334556889998887653
Q ss_pred CHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207 470 NHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGF 506 (613)
Q Consensus 470 ~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~ 506 (613)
-. .+. +..+.+.|.+|.+...|+..+-.+++++.
T Consensus 603 ~~-y~p--~~fgqngYa~V~~v~~LP~~L~~lyrkL~ 636 (637)
T COG4548 603 IS-YLP--ALFGQNGYAFVERVAQLPGALPPLYRKLL 636 (637)
T ss_pred hh-hhH--HHhccCceEEccchhhcchhHHHHHHHhc
Confidence 33 233 23455678899999999999999988764
No 60
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=98.34 E-value=1.3e-05 Score=79.61 Aligned_cols=170 Identities=14% Similarity=0.207 Sum_probs=116.9
Q ss_pred CCceEEEEEeCCCCCCCC-----cHHHHHHHHHHHHHhC---CCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHH
Q 007207 325 FKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKL---DPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWI 395 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~-----~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i 395 (613)
.=+.+++|||.|.+|... ++....+.+..|+..+ +|-.+++||.-.+. +..+...+. +.+....++.
T Consensus 59 iiRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltg--np~~hI~aL~-- 134 (378)
T KOG2807|consen 59 IIRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTG--NPRIHIHALK-- 134 (378)
T ss_pred hheeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcC--CHHHHHHHHh--
Confidence 447899999999999863 5666667777777654 35668899888765 444444332 4444444443
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHhcCCCCc-c-EEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHH
Q 007207 396 GINFIAGGSTNICAPLTKAVEMLTNSRGSI-P-IIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYF 473 (613)
Q Consensus 396 ~~~~~~~GgT~l~~aL~~A~~~l~~~~~~~-~-~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~ 473 (613)
......|.-.+..||+.|.+.|...++.. | ++|+++.=...|+.++.+.+..... .++|+..||+.. ....
T Consensus 135 -~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~----~kIRvsvIgLsa--Ev~i 207 (378)
T KOG2807|consen 135 -GLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKA----YKIRVSVIGLSA--EVFI 207 (378)
T ss_pred -cccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHHHHHHHh----hCeEEEEEeech--hHHH
Confidence 23357888999999999999998876543 4 4455544444566666666655432 348999999875 5578
Q ss_pred HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccce
Q 007207 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~ 509 (613)
.+.|+++|+|.|..+-|...+.+ ++.+...|.
T Consensus 208 cK~l~kaT~G~Y~V~lDe~Hlke----Ll~e~~~Pp 239 (378)
T KOG2807|consen 208 CKELCKATGGRYSVALDEGHLKE----LLLEHTHPP 239 (378)
T ss_pred HHHHHHhhCCeEEEEeCHHHHHH----HHHhcCCCC
Confidence 99999999999999888776654 444555444
No 61
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.31 E-value=1.2e-05 Score=86.72 Aligned_cols=170 Identities=27% Similarity=0.334 Sum_probs=128.2
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
...+.+.++++|+|+||.+..+..++.+...++..+.+.+.+.++.|........+.....+...+..++. ....+.
T Consensus 34 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~ 110 (399)
T COG2304 34 LLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTGATNKESITAAID---QSLQAG 110 (399)
T ss_pred cccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCcccccCHHHHHHHHh---hhhccc
Confidence 55788999999999999998899999999999999999999999999996666555443446666666665 336789
Q ss_pred CCcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207 403 GSTNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~ 480 (613)
|.|.+..++..+++.+... .+....+.+.|||..+........+..........++.+.++|+|.+.+.+.+..++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~n~~~~~~~~~~ 190 (399)
T COG2304 111 GATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAA 190 (399)
T ss_pred cccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEecccccchhhhhhhhhc
Confidence 9999999999999887652 34466899999988742211111122222222234688999999999999999999999
Q ss_pred cCcEEEEcCCCcHHH
Q 007207 481 SRGYYGAAYDLDSIE 495 (613)
Q Consensus 481 ~gG~~~~v~~~~~l~ 495 (613)
..|...++.....-.
T Consensus 191 ~~g~l~~~~~~~~~~ 205 (399)
T COG2304 191 ANGNLAFIYLSSLSE 205 (399)
T ss_pred cCcccccccCccccc
Confidence 888887777664443
No 62
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=98.30 E-value=4.2e-06 Score=86.61 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=105.7
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCccee-------eeccccccCHHHHHHHHHHHhh-
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYL-------FSTSMELATKEAVERAHQWIGI- 397 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~-------~~~~~~~~~~~~~~~a~~~i~~- 397 (613)
.-|.+|||.||||.|.+|..|..+...+...|. .+..+-|..|.+.++. |...-.+..+..+......+..
T Consensus 414 tvVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyks 493 (620)
T COG4547 414 TVVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKS 493 (620)
T ss_pred hhheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhc
Confidence 346799999999999999999888887777775 4788888888875422 2222222233222222221110
Q ss_pred ----------cCCC--CCC---cch-HHHHHHHHHHHhcCCCCccEEEEEecCCcCch--------hH---HHHHHHHHH
Q 007207 398 ----------NFIA--GGS---TNI-CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE--------RQ---ICDAMKSRL 450 (613)
Q Consensus 398 ----------~~~~--~Gg---T~l-~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~--------~~---~~~~~~~~~ 450 (613)
++.. .-| -|+ ++||-+|.+.|-.++...+.+++||||.+-+. .- -+..+.+.+
T Consensus 494 AdaPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpEqrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeI 573 (620)
T COG4547 494 ADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEI 573 (620)
T ss_pred cCCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChhhceEEEEecCCCcccccccccCCchHHHHHHHHHHHHH
Confidence 1110 111 122 67999999998888888899999999998432 11 223333333
Q ss_pred HcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHh
Q 007207 451 TNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG 505 (613)
Q Consensus 451 ~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~ 505 (613)
.. ...+.+.+||||.++.+++-+..+ +-+.++|...|...+..+
T Consensus 574 Et--rSpveLlAIGighDvtRyYrravt---------iVdaeeL~gamteqLa~l 617 (620)
T COG4547 574 ET--RSPVELLAIGIGHDVTRYYRRAVT---------IVDAEELAGAMTEQLAAL 617 (620)
T ss_pred hc--CCchhheeeecccccchhhhhhee---------EecHHHhchHHHHHHHHH
Confidence 32 235789999999998887766432 445677766666555544
No 63
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.28 E-value=2.9e-05 Score=77.89 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=100.9
Q ss_pred CCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCC--CCCeEEEEEeCCcceeee--c-------------------c-
Q 007207 325 FKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFS--T-------------------S- 379 (613)
Q Consensus 325 ~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~~~--~-------------------~- 379 (613)
.|-.++||||+|.. ....-++.++++++..|+.++ ++.+|+|++|++..+.+. . .
T Consensus 2 ~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~ 81 (243)
T PF04811_consen 2 QPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLP 81 (243)
T ss_dssp S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTS
T ss_pred CCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCc
Confidence 45679999999854 444578999999999999999 899999999998765431 1 0
Q ss_pred ---cc--ccCHHHHHHHHHHHhhcCC----CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh----------
Q 007207 380 ---ME--LATKEAVERAHQWIGINFI----AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER---------- 440 (613)
Q Consensus 380 ---~~--~~~~~~~~~a~~~i~~~~~----~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~---------- 440 (613)
.. ....+.+.++++.|..... ...+..++.||+.|..++..... ...|++++-|.++-+.
T Consensus 82 ~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~-gGkI~~F~s~~pt~G~Gg~l~~~~~~ 160 (243)
T PF04811_consen 82 DGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNT-GGKILVFTSGPPTYGPGGSLKKREDS 160 (243)
T ss_dssp SSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS--EEEEEEESS---SSSTTSS-SBTTS
T ss_pred ccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhcccc-CCEEEEEeccCCCCCCCceecccccc
Confidence 00 1135677888887763222 22467789999999999983222 2356777777653111
Q ss_pred -----------------HHHHHHHHHHHcCCCCCceEEEEEecC-CCCHHHHHHHHHhcCcEEEEcCCCc
Q 007207 441 -----------------QICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFLRMLAMISRGYYGAAYDLD 492 (613)
Q Consensus 441 -----------------~~~~~~~~~~~~~~~~~~~i~tigiG~-~~~~~~L~~lA~~~gG~~~~v~~~~ 492 (613)
+..+.+...+.+. ++.|..+..+. .++-..|..|++.|||..++..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~~---~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~ 227 (243)
T PF04811_consen 161 SHYDTEKEKALLLPPANEFYKKLAEECSKQ---GISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFN 227 (243)
T ss_dssp CCCCHCTTHHCHSHSSSHHHHHHHHHHHHC---TEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTT
T ss_pred cccccccchhhhccccchHHHHHHHHHHhc---CCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCC
Confidence 1233444444332 24555555553 4678889999999999988887766
No 64
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=98.26 E-value=1.3e-05 Score=85.36 Aligned_cols=174 Identities=18% Similarity=0.280 Sum_probs=113.5
Q ss_pred EEEEEeCCCCCCCC------cHHHHHHHHHHHHHhCC-----CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhh
Q 007207 329 VIFIVDISGSMQGK------PLEDTKNALAVALSKLD-----PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI 397 (613)
Q Consensus 329 vvfviD~SgSM~g~------~~~~ak~al~~~l~~L~-----~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 397 (613)
+.|+||+||||..+ -++.||.|+..|++.-. .+||+-+++|..-...+.-.+ .++-.-.++.|+
T Consensus 4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~----~~~~a~~~~eik- 78 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVAC----EKLGAVVIEEIK- 78 (888)
T ss_pred EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHH----hhcccHHHHHHH-
Confidence 67999999999853 58999999999996531 389999999988654332221 222233455555
Q ss_pred cCC-CCCCcchHHHHHHHHHHHhcCC----------CC------ccEEEEEecCCc-CchhHH--------------HHH
Q 007207 398 NFI-AGGSTNICAPLTKAVEMLTNSR----------GS------IPIIFLVTDGAV-EDERQI--------------CDA 445 (613)
Q Consensus 398 ~~~-~~GgT~l~~aL~~A~~~l~~~~----------~~------~~~IillTDG~~-~~~~~~--------------~~~ 445 (613)
.+. ..|.+....++..|+++|.-.. ++ ...||+||||.- +....+ .+.
T Consensus 79 ~l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~ 158 (888)
T KOG3768|consen 79 KLHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEM 158 (888)
T ss_pred hhcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCCcccc
Confidence 444 4566677788888999885321 11 348999999931 100000 001
Q ss_pred HHHHHHcCCCCCceEEEEEe---cC-----------CCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceee
Q 007207 446 MKSRLTNGGSICPRIYTFGI---GS-----------YCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLA 511 (613)
Q Consensus 446 ~~~~~~~~~~~~~~i~tigi---G~-----------~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~ 511 (613)
.++.. +=+-|+|++-+ |. ..|...++.|.+.+||+.+.+.+...+.+.++.++.+...-++-
T Consensus 159 TkepF----RWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~lnqciesLvqkvQ~gVvv 234 (888)
T KOG3768|consen 159 TKEPF----RWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLNQCIESLVQKVQYGVVV 234 (888)
T ss_pred ccccc----hhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeeeCHHHHHHHHHHHHHhhccCeEE
Confidence 11110 11135666654 21 23556799999999999999999999999999998887655543
No 65
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=98.25 E-value=7.4e-05 Score=71.53 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=117.4
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh------CC--C--CCeEEEEEeCC--cceeeeccccccCHHHHHHHHH
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSK------LD--P--GDSFNIVAFNG--ETYLFSTSMELATKEAVERAHQ 393 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~------L~--~--~d~~~Ii~F~~--~~~~~~~~~~~~~~~~~~~a~~ 393 (613)
..++++.+|.|+||....+..-++.+...|.. +. + ...++++.|++ ......+.+...+..+...+.+
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~ 82 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA 82 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence 46799999999999987666666655554421 21 2 34577788887 4566678777778888888877
Q ss_pred HHhhc-CCCCCCcchHHHHHHHHHHHhcCCC--CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207 394 WIGIN-FIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (613)
Q Consensus 394 ~i~~~-~~~~GgT~l~~aL~~A~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~ 470 (613)
.|... ....++|.|+.||..+..+|.+.+. .++.|=+-.||..|.........+...... ++.|+.+.|+....
T Consensus 83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~---GitINgL~I~~~~~ 159 (205)
T PF06707_consen 83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAA---GITINGLAILDDDP 159 (205)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHC---CeEEeeeEecCCCC
Confidence 77632 2345679999999999999987654 355677778999877644444455544433 48899998875432
Q ss_pred -------HHHHHHHHHhcCc-EEEEcCCCcHHHHHHH-HHHHHhc
Q 007207 471 -------HYFLRMLAMISRG-YYGAAYDLDSIEIQMQ-KLFTRGF 506 (613)
Q Consensus 471 -------~~~L~~lA~~~gG-~~~~v~~~~~l~~~l~-~~~~~~~ 506 (613)
.++-+.+- .|.| ....+.+.++..++|. |++.++.
T Consensus 160 ~~~~~L~~yy~~~VI-gGpgAFV~~a~~~~df~~AirrKL~rEi~ 203 (205)
T PF06707_consen 160 FGGADLDAYYRRCVI-GGPGAFVETARGFEDFAEAIRRKLIREIA 203 (205)
T ss_pred CccccHHHHHhhhcc-cCCCceEEEcCCHHHHHHHHHHHHHHHhc
Confidence 23333332 2445 4455667777777775 4555543
No 66
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=98.25 E-value=3.9e-05 Score=76.71 Aligned_cols=148 Identities=19% Similarity=0.196 Sum_probs=101.2
Q ss_pred ceEEEEEeCCCCCC---------------CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCccee---eeccc-------c
Q 007207 327 KDVIFIVDISGSMQ---------------GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYL---FSTSM-------E 381 (613)
Q Consensus 327 ~~vvfviD~SgSM~---------------g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~---~~~~~-------~ 381 (613)
.++++-||.++|=. ....+.|.+++..++..+..+.+|-++.|+..... ..... .
T Consensus 32 ~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p~ 111 (254)
T cd01459 32 SNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPE 111 (254)
T ss_pred eeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCCc
Confidence 46777777777642 13567788888888888888999999999985421 11110 0
Q ss_pred ccCHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCC--ccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCce
Q 007207 382 LATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGS--IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPR 459 (613)
Q Consensus 382 ~~~~~~~~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~~~~~~--~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (613)
...-+.+.++-+..-......|.|++...|+.|.+........ .-+++++|||..++..+..+.+.++- ...+.
T Consensus 112 ~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS----~~PlS 187 (254)
T cd01459 112 CQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEAS----KYPLS 187 (254)
T ss_pred ccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHh----cCCeE
Confidence 0112333333332223566789999999999998877644322 44689999999999887777776552 34577
Q ss_pred EEEEEecCCCCHHHHHHHHH
Q 007207 460 IYTFGIGSYCNHYFLRMLAM 479 (613)
Q Consensus 460 i~tigiG~~~~~~~L~~lA~ 479 (613)
|..||+|+. +...|+.|-.
T Consensus 188 IiiVGVGd~-~F~~M~~LD~ 206 (254)
T cd01459 188 IVIVGVGDG-PFDAMERLDD 206 (254)
T ss_pred EEEEEeCCC-ChHHHHHhcC
Confidence 888899975 8888988865
No 67
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.24 E-value=0.0001 Score=73.77 Aligned_cols=163 Identities=14% Similarity=0.161 Sum_probs=107.9
Q ss_pred CCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCC--CCCeEEEEEeCCcceeeecc---------------------c
Q 007207 325 FKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFSTS---------------------M 380 (613)
Q Consensus 325 ~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~~~~~---------------------~ 380 (613)
.|..++||||+|.. ....-++.+++++...++.|+ ++.+|+||+|++....+.-. .
T Consensus 2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~ 81 (239)
T cd01468 2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP 81 (239)
T ss_pred CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence 46778999999974 444568999999999999999 89999999999866443100 0
Q ss_pred ----cc--cCHHHHHHHHHHHhhcC----CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCch-----------
Q 007207 381 ----EL--ATKEAVERAHQWIGINF----IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE----------- 439 (613)
Q Consensus 381 ----~~--~~~~~~~~a~~~i~~~~----~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~----------- 439 (613)
.+ -..+.+.++++.|.... ....+..++.||..|..++.... ....|++++.|.++-+
T Consensus 82 ~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 82 DRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-AGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred CceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-CCceEEEEECCCCCCCCCccccCcccc
Confidence 00 01244566666665322 22356789999999999997652 1336888888887511
Q ss_pred --------------hHHHHHHHHHHHcCCCCCceEEEEEecC-CCCHHHHHHHHHhcCcEEEEcCCC
Q 007207 440 --------------RQICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFLRMLAMISRGYYGAAYDL 491 (613)
Q Consensus 440 --------------~~~~~~~~~~~~~~~~~~~~i~tigiG~-~~~~~~L~~lA~~~gG~~~~v~~~ 491 (613)
....+.+...+.+ .++.+..+..+. .++-..|..|++.|||..++-.+.
T Consensus 161 ~~~~~~e~~~~~~a~~fY~~la~~~~~---~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f 224 (239)
T cd01468 161 PIRSHDEAQLLKPATKFYKSLAKECVK---SGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF 224 (239)
T ss_pred cCCCccchhcccccHHHHHHHHHHHHH---cCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence 0122223333322 224455554443 467788999999999998887765
No 68
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.17 E-value=0.0001 Score=73.96 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=102.6
Q ss_pred CCceEEEEEeCCCCCC-CCcHHHHHHHHHHHHHhCCCC---CeEEEEEeCCcceeee--c------------ccc---c-
Q 007207 325 FKKDVIFIVDISGSMQ-GKPLEDTKNALAVALSKLDPG---DSFNIVAFNGETYLFS--T------------SME---L- 382 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~-g~~~~~ak~al~~~l~~L~~~---d~~~Ii~F~~~~~~~~--~------------~~~---~- 382 (613)
.|-.++||||+|-.-- ..-++.++++++..|+.++++ .+|+||+|++..+.+. . ... +
T Consensus 2 ~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~ 81 (244)
T cd01479 2 QPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPL 81 (244)
T ss_pred CCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCC
Confidence 4667999999975432 225899999999999999876 8999999999764421 0 000 0
Q ss_pred ---------cCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-----------
Q 007207 383 ---------ATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER----------- 440 (613)
Q Consensus 383 ---------~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~----------- 440 (613)
-..+.+.++++.|.... ....+..++.||+.|..+++...+ .|++++.|.++-+.
T Consensus 82 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~GG---kIi~f~s~~pt~GpG~l~~~~~~~~ 158 (244)
T cd01479 82 PDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETGG---KIIVFQSSLPTLGAGKLKSREDPKL 158 (244)
T ss_pred CcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcCC---EEEEEeCCCCCcCCcccccCccccc
Confidence 02344555666554211 233567899999999999985433 67888888764211
Q ss_pred --------------HHHHHHHHHHHcCCCCCceEEEEEec-CCCCHHHHHHHHHhcCcEEEEcC
Q 007207 441 --------------QICDAMKSRLTNGGSICPRIYTFGIG-SYCNHYFLRMLAMISRGYYGAAY 489 (613)
Q Consensus 441 --------------~~~~~~~~~~~~~~~~~~~i~tigiG-~~~~~~~L~~lA~~~gG~~~~v~ 489 (613)
...+.+...+.+ .++.|..|.+. ..++-..|..+++.|||..++..
T Consensus 159 ~~~~~e~~~~~p~~~fY~~la~~~~~---~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~ 219 (244)
T cd01479 159 LSTDKEKQLLQPQTDFYKKLALECVK---SQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYP 219 (244)
T ss_pred cCchhhhhhcCcchHHHHHHHHHHHH---cCeEEEEEEccCcccChhhhhhhhhhcCceEEEEC
Confidence 112222222222 22444444443 34688889999999999988776
No 69
>PRK05325 hypothetical protein; Provisional
Probab=97.78 E-value=0.00046 Score=72.80 Aligned_cols=163 Identities=14% Similarity=0.153 Sum_probs=100.5
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G 403 (613)
...-+++++|+||||.+..-+.||..-..+-.-|. .-.++-++.-.++...+ .++.++ +. ...-.|
T Consensus 221 s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~Ak-----EVdEee------FF--~~~esG 287 (401)
T PRK05325 221 SQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAK-----EVDEEE------FF--YSRESG 287 (401)
T ss_pred CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCcee-----EcCHHH------cc--ccCCCC
Confidence 34456678999999998877888876544333333 23556666555554322 123321 22 245679
Q ss_pred CcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcCc--hhHHHHHHHHHHHcCCCCCceEEEEE-ecCCC--CHHHHH
Q 007207 404 STNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVED--ERQICDAMKSRLTNGGSICPRIYTFG-IGSYC--NHYFLR 475 (613)
Q Consensus 404 gT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~~--~~~~~~~~~~~~~~~~~~~~~i~tig-iG~~~--~~~~L~ 475 (613)
||-+..|++.+.+.+... ...+-.++-.|||..++ ...+...+.+.+-.. .+.|+.+ |+... +..+++
T Consensus 288 GT~vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp~----~~~f~Y~Ev~~~~~~~~~l~~ 363 (401)
T PRK05325 288 GTIVSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSDNPRCVELLREELLPV----CNYFAYIEVTPRAYRHQTLWR 363 (401)
T ss_pred CeEehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHHH----hhheEEEEecCCCCCchHHHH
Confidence 999999999999999753 23356889999999753 344555555333110 2344443 44432 445555
Q ss_pred HHHHhcCc----EEEEcCCCcHHHHHHHHHHHH
Q 007207 476 MLAMISRG----YYGAAYDLDSIEIQMQKLFTR 504 (613)
Q Consensus 476 ~lA~~~gG----~~~~v~~~~~l~~~l~~~~~~ 504 (613)
........ ....+.+.+++-.+|..+|.+
T Consensus 364 ~y~~i~~~~~~f~~~~I~~~~dIyp~~r~lf~k 396 (401)
T PRK05325 364 EYERLQDTFPNFAMQRIRDKEDIYPVFRELFKK 396 (401)
T ss_pred HHHHhhccCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 55544432 345678888998888888854
No 70
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=97.73 E-value=0.0012 Score=66.86 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=103.3
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeecc-c-----------c-----------
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTS-M-----------E----------- 381 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~-~-----------~----------- 381 (613)
.|-.++||||+|-. ...++.+|+++...|+.|+++.+|+||+|++.++.+.=. . .
T Consensus 2 ~pp~~vFviDvs~~--~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~l 79 (267)
T cd01478 2 SPPVFLFVVDTCMD--EEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDML 79 (267)
T ss_pred CCCEEEEEEECccC--HHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHHHHHh
Confidence 35679999999764 556999999999999999999999999999987543200 0 0
Q ss_pred ---------------------------------ccCHHHHHHHHHHHhhcC-----CCCCCcchHHHHHHHHHHHhcC-C
Q 007207 382 ---------------------------------LATKEAVERAHQWIGINF-----IAGGSTNICAPLTKAVEMLTNS-R 422 (613)
Q Consensus 382 ---------------------------------~~~~~~~~~a~~~i~~~~-----~~~GgT~l~~aL~~A~~~l~~~-~ 422 (613)
.-.+..+..+++.|.... .......++.||+.|..++... +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~~ 159 (267)
T cd01478 80 GLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFP 159 (267)
T ss_pred ccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhcC
Confidence 001234445555553211 1224567899999999998732 1
Q ss_pred CCccEEEEEecCCcCchh------------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHH
Q 007207 423 GSIPIIFLVTDGAVEDER------------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHY 472 (613)
Q Consensus 423 ~~~~~IillTDG~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~ 472 (613)
.....|++++-|-++-+. ...+.+...+.+ ....+.+|..+. +.++-.
T Consensus 160 ~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~-~~vsvDlF~~s~-d~vgla 237 (267)
T cd01478 160 NTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAA-NGHAVDIFAGCL-DQVGLL 237 (267)
T ss_pred CCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHh-CCeEEEEEeccc-cccCHH
Confidence 122367777777653110 011111111211 223345555543 347889
Q ss_pred HHHHHHHhcCcEEEEcCCCc
Q 007207 473 FLRMLAMISRGYYGAAYDLD 492 (613)
Q Consensus 473 ~L~~lA~~~gG~~~~v~~~~ 492 (613)
.|..+++.|||..++..+..
T Consensus 238 em~~l~~~TGG~v~~~~~f~ 257 (267)
T cd01478 238 EMKVLVNSTGGHVVLSDSFT 257 (267)
T ss_pred HHHHHHHhcCcEEEEeCCcc
Confidence 99999999999988877664
No 71
>PTZ00395 Sec24-related protein; Provisional
Probab=97.67 E-value=0.014 Score=69.03 Aligned_cols=268 Identities=12% Similarity=0.103 Sum_probs=151.0
Q ss_pred CCCCceEEEEEeCCC-CCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeee-----------------------
Q 007207 323 KVFKKDVIFIVDISG-SMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFS----------------------- 377 (613)
Q Consensus 323 ~~~~~~vvfviD~Sg-SM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~----------------------- 377 (613)
.+.|-.++||||+|- |+..--+..+.++++..|+.++ +..+|+||+|++....+.
T Consensus 949 ~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395 949 NMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred CCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence 567789999999994 4443456778888888888886 578999999998753221
Q ss_pred -----------ccc-----c--ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC
Q 007207 378 -----------TSM-----E--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE 437 (613)
Q Consensus 378 -----------~~~-----~--~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~ 437 (613)
|+. . .-+.+.++.+++.|.... ....+..++.||+.|+..|....+.-+++++.+ ..|+
T Consensus 1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~S-SLPn 1107 (1560)
T PTZ00395 1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYT-TTPN 1107 (1560)
T ss_pred EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEc-CCCC
Confidence 111 0 012345666666665322 223567889999999999987653344555544 4442
Q ss_pred ch--------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCC--CHHHHHHHHHhcCcEEEEcCCCc---
Q 007207 438 DE--------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYC--NHYFLRMLAMISRGYYGAAYDLD--- 492 (613)
Q Consensus 438 ~~--------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~--~~~~L~~lA~~~gG~~~~v~~~~--- 492 (613)
-+ ....+.+...+.+ ....+.+|.++- ..+ +-.-|..|++.|||..++-....
T Consensus 1108 iGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk-~qISVDLFLfSs-qYvDVDVATLg~Lsr~TGGqlyyYPnFna~r 1185 (1560)
T PTZ00395 1108 CGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYA-FNISVDIFIISS-NNVRVCVPSLQYVAQNTGGKILFVENFLWQK 1185 (1560)
T ss_pred CCCCcccccccccccccccccchHHHHHHHHHHHh-cCCceEEEEccC-cccccccccccchhcccceeEEEeCCCcccc
Confidence 11 1122333333322 234455555432 222 34568999999999977655542
Q ss_pred HHHHHHHHHHHHhcc-ceee--eEEEEecCCCCceeec-------------cCCCCCCCCCCcEEEEEEEcCCCCC--eE
Q 007207 493 SIEIQMQKLFTRGFS-SVLA--NIAIDTLKDLDEFEMY-------------PSRIPDLSSESPLIVSGRYQGKFPD--TL 554 (613)
Q Consensus 493 ~l~~~l~~~~~~~~~-p~l~--~i~l~~~~~~~~~~v~-------------p~~ip~l~~g~~~~v~g~~~~~~~~--~v 554 (613)
+-.....++.+.+.. +..- -++++...++.....+ -..+|.+...+.+.|.-++.++... .+
T Consensus 1186 D~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~~~~~A 1265 (1560)
T PTZ00395 1186 DYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISESKKQI 1265 (1560)
T ss_pred cHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccCCCCcE
Confidence 222333444455443 3322 3455555554333333 1246777788888888888765432 22
Q ss_pred EEEE----Ee-CCcc---cEEEEEecccc--------CCCcHHHHHHHHHHHHHH
Q 007207 555 KAKG----FL-GDLS---NFVVELKLQLA--------KDIPLDRICAKQQIDLLT 593 (613)
Q Consensus 555 ~l~g----~~-~~~~---~~~~~l~~~~~--------~~~~l~~lwA~~~I~~L~ 593 (613)
-+.. +. .+++ -+++.+++... +-..+-.+++|..+....
T Consensus 1266 YFQaALLYTSssGERRIRVHTLALPVTSsLseVFrsADqdAIvslLAK~AV~~aL 1320 (1560)
T PTZ00395 1266 YFQCACIYTNLWGDRFVRLHTTHMNLTSSLSTVFRYTDAEALMNILIKQLCTNIL 1320 (1560)
T ss_pred EEEEEEeeccCCCcEEEEEEeeeecccCCHHHHHHhhcHHHHHHHHHHHHHHHhc
Confidence 2221 11 2222 35666666432 113456667777776544
No 72
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=97.62 E-value=0.0042 Score=65.77 Aligned_cols=183 Identities=14% Similarity=0.183 Sum_probs=105.9
Q ss_pred eEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCccee----------
Q 007207 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK---LDPGDSFNIVAFNGETYL---------- 375 (613)
Q Consensus 309 ~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~~---------- 375 (613)
.|.+.+.+. +..|.|++|++|.|+||.. .++.+|.....+.+. +..+-|+++-+|-+....
T Consensus 87 ~f~~~~~~a-----~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l 160 (423)
T smart00187 87 NFTLTVRQA-----EDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKL 160 (423)
T ss_pred EEEEEEEec-----ccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHh
Confidence 455555443 4479999999999999975 577777777766655 446788998888765210
Q ss_pred -------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHH---HHHhcCCCCccEEE
Q 007207 376 -------------------FSTSMELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAV---EMLTNSRGSIPIIF 429 (613)
Q Consensus 376 -------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~---~~l~~~~~~~~~Ii 429 (613)
..+++. +.. +..+.+. .....|+-+- ..||..|. +.+.=+++..+.+|
T Consensus 161 ~~PC~~~~~~c~p~f~f~~~L~LT~--~~~---~F~~~V~-~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv 234 (423)
T smart00187 161 ENPCPNYNLTCEPPYGFKHVLSLTD--DTD---EFNEEVK-KQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLV 234 (423)
T ss_pred cCCCcCCCCCcCCCcceeeeccCCC--CHH---HHHHHHh-hceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEE
Confidence 011111 333 3444443 3444555442 33443333 23322345678999
Q ss_pred EEecCCcC--------------------------------chhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207 430 LVTDGAVE--------------------------------DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (613)
Q Consensus 430 llTDG~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l 477 (613)
+.||+... |.. ....+.+.+.+.+ . ..||++ -.. ...+.+.|
T Consensus 235 ~~TDa~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYP-Si~ql~~kL~e~n-I-~~IFAV--T~~-~~~~Y~~L 308 (423)
T smart00187 235 FSTDAGFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYP-SIGQLNQKLAENN-I-NPIFAV--TKK-QVSLYKEL 308 (423)
T ss_pred EEcCCCccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCC-CHHHHHHHHHhcC-c-eEEEEE--ccc-chhHHHHH
Confidence 99998752 111 2344444444322 1 345554 222 23466777
Q ss_pred HHhcCcEEEE--cCCCcHHHHHHHHHHHHhccce
Q 007207 478 AMISRGYYGA--AYDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 478 A~~~gG~~~~--v~~~~~l~~~l~~~~~~~~~p~ 509 (613)
+..-.|...- ..|...+.+.+.+.+.++.+.+
T Consensus 309 s~lipgs~vg~Ls~DSsNIv~LI~~aY~~i~S~V 342 (423)
T smart00187 309 SALIPGSSVGVLSEDSSNVVELIKDAYNKISSRV 342 (423)
T ss_pred HHhcCcceeeecccCcchHHHHHHHHHHhhceEE
Confidence 7766666543 3566778888888888876644
No 73
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=97.58 E-value=0.0018 Score=68.96 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=96.1
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC-CCeEEE--EEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNI--VAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~-~d~~~I--i~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
...-+++++|+||||...+-..||.....+..-|.. -.++-+ |...+.+..+ +.+ ++. ...-
T Consensus 245 s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~EV-------dEe------~FF--~~~e 309 (421)
T PF04285_consen 245 SNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKEV-------DEE------EFF--HSRE 309 (421)
T ss_pred CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEEe-------cHH------Hhc--ccCC
Confidence 344566779999999988778888765544333332 233444 4444444332 322 122 2456
Q ss_pred CCCcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcC--chhHHHHHHH-HHHHcCCCCCceEEEEE-ecCCCCH---
Q 007207 402 GGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVE--DERQICDAMK-SRLTNGGSICPRIYTFG-IGSYCNH--- 471 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~--~~~~~~~~~~-~~~~~~~~~~~~i~tig-iG~~~~~--- 471 (613)
+|||-+..|++.+.+++... ...+-.++-+|||..+ |.......+. +.+.. +..|..+ |+.....
T Consensus 310 sGGT~vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp~-----~~~f~Y~Ei~~~~~~~~~ 384 (421)
T PF04285_consen 310 SGGTRVSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSDNERCVELLEEELLPV-----CNYFGYGEITQPGRHSSW 384 (421)
T ss_pred CCCeEehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCCCHHHHHHHHHHHHHh-----cCeEEEEEeccCccchHH
Confidence 89999999999999999752 2335688999999975 3344555555 33321 2344443 3311122
Q ss_pred HHHHHHHHhcCc-EEEEcCCCcHHHHHHHHHHHH
Q 007207 472 YFLRMLAMISRG-YYGAAYDLDSIEIQMQKLFTR 504 (613)
Q Consensus 472 ~~L~~lA~~~gG-~~~~v~~~~~l~~~l~~~~~~ 504 (613)
..++.+...... ....+.+.+++-.+|..+|++
T Consensus 385 ~~~~~~~~~~~~f~~~~i~~~~di~~~~r~~f~~ 418 (421)
T PF04285_consen 385 REYEELKESHDNFAMVRIREKEDIYPVFRELFKK 418 (421)
T ss_pred HHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 234554433333 244678888999999988865
No 74
>PLN00162 transport protein sec23; Provisional
Probab=97.54 E-value=0.0043 Score=72.13 Aligned_cols=178 Identities=13% Similarity=0.164 Sum_probs=111.3
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeec------------ccccc-------
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFST------------SMELA------- 383 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~------------~~~~~------- 383 (613)
...|--++||||+| +....++..|+++...|+.|+++.+|+||+|++.++.+.= .....
T Consensus 121 ~~~pp~fvFvID~s--~~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~ 198 (761)
T PLN00162 121 APSPPVFVFVVDTC--MIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILE 198 (761)
T ss_pred CCCCcEEEEEEecc--hhHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHH
Confidence 45677899999998 4556789999999999999999999999999998754320 00000
Q ss_pred -------------------------------------CHHHHHHHHHHHhhcCC--C---CCCcchHHHHHHHHHHHhcC
Q 007207 384 -------------------------------------TKEAVERAHQWIGINFI--A---GGSTNICAPLTKAVEMLTNS 421 (613)
Q Consensus 384 -------------------------------------~~~~~~~a~~~i~~~~~--~---~GgT~l~~aL~~A~~~l~~~ 421 (613)
....+..+++.|..... . .....++.||..|..++...
T Consensus 199 ~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~ 278 (761)
T PLN00162 199 QLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGAC 278 (761)
T ss_pred HhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhc
Confidence 11345555565542210 1 12456899999999998632
Q ss_pred -CCCccEEEEEecCCcCchh------------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207 422 -RGSIPIIFLVTDGAVEDER------------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (613)
Q Consensus 422 -~~~~~~IillTDG~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~ 470 (613)
++....|++++-|-++.+. ...+.+...+.+ ....+.+|..+. +.++
T Consensus 279 ~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~-~gisvDlF~~s~-dqvg 356 (761)
T PLN00162 279 VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVA-QGHVLDVFACSL-DQVG 356 (761)
T ss_pred cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHH-cCceEEEEEccc-cccC
Confidence 1223467777777653110 011112222222 223345555444 3468
Q ss_pred HHHHHHHHHhcCcEEEEcCCCcH--HHHHHHHHHHH
Q 007207 471 HYFLRMLAMISRGYYGAAYDLDS--IEIQMQKLFTR 504 (613)
Q Consensus 471 ~~~L~~lA~~~gG~~~~v~~~~~--l~~~l~~~~~~ 504 (613)
-..|+.+++.|||..+.-.+.+. +.+.+.+++.+
T Consensus 357 laem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r 392 (761)
T PLN00162 357 VAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFER 392 (761)
T ss_pred HHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhcc
Confidence 88999999999999887766643 45555555553
No 75
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=97.53 E-value=0.0019 Score=67.02 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G 403 (613)
...-+++++|+||||....-+.||..-..+..-|. .-.++-++.-.++.... ..+.++ +. ...-.|
T Consensus 201 s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~Ak-----EVdEee------FF--~~~EsG 267 (371)
T TIGR02877 201 SNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAK-----EVTEEE------FF--HKGESG 267 (371)
T ss_pred CcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeE-----EcCHHH------hc--ccCCCC
Confidence 44456678999999998777888876544433333 23456666665554322 123332 22 235679
Q ss_pred CcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcC--chhHHHHHHHHHHHcCCCCCceEEEEE-ecC-CCCHHHHHH
Q 007207 404 STNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVE--DERQICDAMKSRLTNGGSICPRIYTFG-IGS-YCNHYFLRM 476 (613)
Q Consensus 404 gT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~--~~~~~~~~~~~~~~~~~~~~~~i~tig-iG~-~~~~~~L~~ 476 (613)
||-+..|++.+.+.+..+ ...+-..+-.|||..+ |...+...+.+.+.. .+.|+.+ |+. .....++..
T Consensus 268 GT~vSSA~~l~~eII~~rYpp~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp~-----~~~f~Y~Ei~~~~~~~~l~~~ 342 (371)
T TIGR02877 268 GTYCSSGYKKALEIIDERYNPARYNIYAFHFSDGDNLTSDNERAVKLVRKLLEV-----CNLFGYGEIMPYGYSNTLKNK 342 (371)
T ss_pred CeEehHHHHHHHHHHHhhCChhhCeeEEEEcccCCCccCCcHHHHHHHHHHHHh-----hheEEEEEecCCCCcchHHHH
Confidence 999999999999999753 1235578899999975 344455555554321 2344433 333 112233322
Q ss_pred ----HHHhcCcEEEEcCCCcHHHHHHHHH
Q 007207 477 ----LAMISRGYYGAAYDLDSIEIQMQKL 501 (613)
Q Consensus 477 ----lA~~~gG~~~~v~~~~~l~~~l~~~ 501 (613)
|.. .+=....+.+.+++-.+|..+
T Consensus 343 y~~~i~~-~~f~~~~I~~~~dIyp~~r~l 370 (371)
T TIGR02877 343 FKNEIKD-PNFVPLIIRDKEDLYPALKKF 370 (371)
T ss_pred HHhhhcC-CCeEEEEeCCHHHHHHHHHHh
Confidence 332 222244566666666666554
No 76
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.47 E-value=0.00095 Score=68.40 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc-CCC
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN-FIA 401 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~-~~~ 401 (613)
...+..+++++|+||||++ +...--.+...+.+. -.++-+..|++........... .....|+..+... ...
T Consensus 215 r~~~~~lvvL~DVSGSm~~--ys~~~L~l~hAl~q~--~~R~~~F~F~TRLt~vT~~l~~---rD~~~Al~~~~a~v~dw 287 (395)
T COG3552 215 RRRKPPLVVLCDVSGSMSG--YSRIFLHLLHALRQQ--RSRVHVFLFGTRLTRVTHMLRE---RDLEDALRRLSAQVKDW 287 (395)
T ss_pred ccCCCCeEEEEecccchhh--hHHHHHHHHHHHHhc--ccceeEEEeechHHHHHHHhcc---CCHHHHHHHHHhhcccc
Confidence 4457889999999999975 222222222223233 3455589999986655444332 2333444444312 245
Q ss_pred CCCcchHHHHHHHHHHHhcC-CCCccEEEEEecCCcCchhHHH
Q 007207 402 GGSTNICAPLTKAVEMLTNS-RGSIPIIFLVTDGAVEDERQIC 443 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~~-~~~~~~IillTDG~~~~~~~~~ 443 (613)
.|||.|+.++..-.+..... -.....|+++|||-..+.....
T Consensus 288 ~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd~~~~l 330 (395)
T COG3552 288 DGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRDDIPEL 330 (395)
T ss_pred cCCcchhHHHHHHHccccccccCCceEEEEEecccccCCchHH
Confidence 79999999987654432211 1223589999999986554333
No 77
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.45 E-value=0.0023 Score=69.17 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=106.8
Q ss_pred CCceEEEEEeCCCCCC---------------CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcce------eeec--cc-
Q 007207 325 FKKDVIFIVDISGSMQ---------------GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETY------LFST--SM- 380 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~---------------g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~------~~~~--~~- 380 (613)
...++++-||-+.|=. -...++|..++-..+....++.+|--..||...- ..+. +.
T Consensus 284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~ 363 (529)
T KOG1327|consen 284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP 363 (529)
T ss_pred ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence 4567788888887732 2367888888888898888899999999998721 1111 10
Q ss_pred ---cccCHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC---CCccEEEEEecCCcCchhHHHHHHHHHHHcCC
Q 007207 381 ---ELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR---GSIPIIFLVTDGAVEDERQICDAMKSRLTNGG 454 (613)
Q Consensus 381 ---~~~~~~~~~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~~~~---~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~ 454 (613)
....-+.+-+|-+..-.++...|.|++..-|..+.+...+.. ..--+++++|||.+++..+..+.+.++ .
T Consensus 364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~A----S 439 (529)
T KOG1327|consen 364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSA----S 439 (529)
T ss_pred CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhh----c
Confidence 011234445555444457788999999999999998876653 334488999999999987766665544 3
Q ss_pred CCCceEEEEEecCCCCHHHHHHHHHhc
Q 007207 455 SICPRIYTFGIGSYCNHYFLRMLAMIS 481 (613)
Q Consensus 455 ~~~~~i~tigiG~~~~~~~L~~lA~~~ 481 (613)
.....|..||+|+ .+.+.|+.|-...
T Consensus 440 ~lPlSIIiVGVGd-~df~~M~~lD~d~ 465 (529)
T KOG1327|consen 440 DLPLSIIIVGVGD-ADFDMMRELDGDD 465 (529)
T ss_pred cCCeEEEEEEeCC-CCHHHHHHhhcCC
Confidence 4557788999995 4888888885543
No 78
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0069 Score=67.86 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=112.1
Q ss_pred eEEEEEecCCCCCCCCCCceEEEEEeCCCCCC-CCcHHHHHHHHHHHHHhCC--CCCeEEEEEeCCcceeee--------
Q 007207 309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQ-GKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFS-------- 377 (613)
Q Consensus 309 ~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~-g~~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~~~-------- 377 (613)
.++=++.|.+-.-+++.|.-++||+|+|-|-. ..-++.+++++..-|+.|+ +..+|++|+|++....+.
T Consensus 277 s~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp 356 (887)
T KOG1985|consen 277 SVVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQP 356 (887)
T ss_pred eeEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCC
Confidence 45557889887777889999999999996544 3367889999999999998 678999999998754321
Q ss_pred -------------ccc----c--ccCHHHHHHHHHHHhhcCCC--CCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCc
Q 007207 378 -------------TSM----E--LATKEAVERAHQWIGINFIA--GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV 436 (613)
Q Consensus 378 -------------~~~----~--~~~~~~~~~a~~~i~~~~~~--~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~ 436 (613)
+.. . ...++.++.+++.+...... .-+..++.||+.|+.++....+ + |+++.-+.+
T Consensus 357 ~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG--r-i~vf~s~lP 433 (887)
T KOG1985|consen 357 QMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG--R-ISVFQSTLP 433 (887)
T ss_pred ceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC--e-EEEEeccCC
Confidence 000 0 01234455666665533322 3467899999999999986555 3 444444444
Q ss_pred Cch---------------hHHH-------HHHHHHHHcCCCCCceEEEEEec-CCCCHHHHHHHHHhcCcEEEEcCCC
Q 007207 437 EDE---------------RQIC-------DAMKSRLTNGGSICPRIYTFGIG-SYCNHYFLRMLAMISRGYYGAAYDL 491 (613)
Q Consensus 437 ~~~---------------~~~~-------~~~~~~~~~~~~~~~~i~tigiG-~~~~~~~L~~lA~~~gG~~~~v~~~ 491 (613)
+-+ .+.. ...++......+..+.|.-|-+. ...|-.-|..|++.+||..++-.+.
T Consensus 434 nlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f 511 (887)
T KOG1985|consen 434 NLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSF 511 (887)
T ss_pred CCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCC
Confidence 311 0000 11111111112223444445443 3456778999999999986654443
No 79
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.0098 Score=60.26 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=101.6
Q ss_pred ceEEEEEeCCCCCCC--------CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcc-eeeecccc-----c-------
Q 007207 327 KDVIFIVDISGSMQG--------KPLEDTKNALAVALSK---LDPGDSFNIVAFNGET-YLFSTSME-----L------- 382 (613)
Q Consensus 327 ~~vvfviD~SgSM~g--------~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~-~~~~~~~~-----~------- 382 (613)
.-+++|||++.--.| ..+..+-+++..|++. +....++.||+..+.. ..+.|... .
T Consensus 3 slL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~ 82 (279)
T TIGR00627 3 SLLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKR 82 (279)
T ss_pred cEEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCcccccccccccccc
Confidence 346788998865431 2566666666666653 5678899999887653 23233210 0
Q ss_pred -----------cCHHHHHHHHHHHhhcC---CCCCCcchHHHHHHHHHHHhcCC-------CCccEEEEEecCCcCchhH
Q 007207 383 -----------ATKEAVERAHQWIGINF---IAGGSTNICAPLTKAVEMLTNSR-------GSIPIIFLVTDGAVEDERQ 441 (613)
Q Consensus 383 -----------~~~~~~~~a~~~i~~~~---~~~GgT~l~~aL~~A~~~l~~~~-------~~~~~IillTDG~~~~~~~ 441 (613)
.+..-+.+..+.+.... ...+.+.+..||..|+-.+++.. .-..+|++++-+. +...+
T Consensus 83 ~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-~~~~q 161 (279)
T TIGR00627 83 LRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-DMALQ 161 (279)
T ss_pred ccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-CchHH
Confidence 00011112222222111 12257789999999998876421 1245677776553 33333
Q ss_pred HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHH
Q 007207 442 ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQ 499 (613)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~ 499 (613)
....+ +.+....+.+++|.+++++.+.+..+|++++..|||.|..+.+.+.+.+.+.
T Consensus 162 Yi~~m-n~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q~L~ 218 (279)
T TIGR00627 162 YIPLM-NCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQYLM 218 (279)
T ss_pred HHHHH-HHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHHHHH
Confidence 33322 2222223345999999998655688999999999999999888776655443
No 80
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=97.26 E-value=0.0016 Score=71.40 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=75.2
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCC-CeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPG-DSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~-d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT 405 (613)
.+.+.|.|+||||.|.+++.+.. |..++..+..+ =+=.+|+|+++++...- +..++.+-++.+. ....++.|
T Consensus 341 ~n~iav~DvSGSM~~~pm~vaia-Lgll~ae~~~~pf~~~~ITFs~~P~~~~i-----~g~~l~ekv~~~~-~~~wg~nT 413 (534)
T PF11443_consen 341 ENCIAVCDVSGSMSGPPMDVAIA-LGLLIAELNKGPFKGRFITFSENPQLHKI-----KGDTLREKVRFIR-RMDWGMNT 413 (534)
T ss_pred cceEEEEecCCccCccHHHHHHH-HHHHHHHhcccccCCeEEeecCCceEEEe-----cCCCHHHHHHHHH-hCCcccCC
Confidence 68999999999999998887764 44455566432 22358999999876421 3336777888887 67788999
Q ss_pred chHHHHHHHHHHHhcCC----CCccEEEEEecCCc
Q 007207 406 NICAPLTKAVEMLTNSR----GSIPIIFLVTDGAV 436 (613)
Q Consensus 406 ~l~~aL~~A~~~l~~~~----~~~~~IillTDG~~ 436 (613)
|+...+...+....... .-++.++++||=+.
T Consensus 414 n~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeF 448 (534)
T PF11443_consen 414 NFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEF 448 (534)
T ss_pred cHHHHHHHHHHHHHHcCCChHHCCceEEEEecccc
Confidence 99999988887754332 23578999998654
No 81
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.021 Score=54.23 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=92.9
Q ss_pred ceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHh-C--CCCCeEEEEEeCC-cceeeeccccccCHHHHHHHHHHHhh
Q 007207 327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSK-L--DPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGI 397 (613)
Q Consensus 327 ~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~-L--~~~d~~~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~ 397 (613)
-..+++||.|--|.. +|+..-++++..+... + +|...++|++..+ .++.+..++. +... .+..+.
T Consensus 4 Eatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~--d~gk---ils~lh- 77 (259)
T KOG2884|consen 4 EATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTS--DRGK---ILSKLH- 77 (259)
T ss_pred ceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccc--cchH---HHHHhc-
Confidence 347899999988873 4889999999887643 3 3678899999998 6777765544 3333 344444
Q ss_pred cCCCCCCcchHHHHHHHHHHHhcCCCCc--cEEEEEecCCc-CchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCH-HH
Q 007207 398 NFIAGGSTNICAPLTKAVEMLTNSRGSI--PIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNH-YF 473 (613)
Q Consensus 398 ~~~~~GgT~l~~aL~~A~~~l~~~~~~~--~~IillTDG~~-~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~-~~ 473 (613)
.+...|+.++..+|+.|.-.|+.+.+.. ..||++--... ..+.+.....++..+ .++.|-.|-||...+. +.
T Consensus 78 ~i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk----~~Vaidii~FGE~~~~~e~ 153 (259)
T KOG2884|consen 78 GIQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKK----NKVAIDIINFGEAENNTEK 153 (259)
T ss_pred CCCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHh----cCeeEEEEEeccccccHHH
Confidence 6788999999999999988887665432 34444443333 334444444444332 3377888888865443 44
Q ss_pred HHHH
Q 007207 474 LRML 477 (613)
Q Consensus 474 L~~l 477 (613)
|...
T Consensus 154 l~~f 157 (259)
T KOG2884|consen 154 LFEF 157 (259)
T ss_pred HHHH
Confidence 4433
No 82
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=97.20 E-value=0.0016 Score=64.36 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=63.8
Q ss_pred EEEEEeCCCCCCC------CcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCccee-------------eeccccccCHH
Q 007207 329 VIFIVDISGSMQG------KPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL-------------FSTSMELATKE 386 (613)
Q Consensus 329 vvfviD~SgSM~g------~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~-------------~~~~~~~~~~~ 386 (613)
++||||+|.||.. ..++.+.+++..++... .+.|.+||+.|+++... +.+. ...+.+
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l-~~~~~~ 80 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPL-DPPSAE 80 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEEC-C--BHH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecC-CccCHH
Confidence 7899999999983 25788888888877652 45799999999976432 1222 223555
Q ss_pred HHHHHHHHHhh------cCCCCCCcchHHHHHHHHHHHhc--C--CCCccEEEEEecCCc
Q 007207 387 AVERAHQWIGI------NFIAGGSTNICAPLTKAVEMLTN--S--RGSIPIIFLVTDGAV 436 (613)
Q Consensus 387 ~~~~a~~~i~~------~~~~~GgT~l~~aL~~A~~~l~~--~--~~~~~~IillTDG~~ 436 (613)
.+....+.+.. ........++..||..|..++.. . .-..+.|+|+||+..
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~ 140 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDG 140 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SS
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCC
Confidence 55555543331 11233456899999999999874 2 223578999999874
No 83
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=97.18 E-value=0.0067 Score=55.57 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=83.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcce---e---eecccc------ccCHHHHHHHHHHHhhcCCCCCCcchHH
Q 007207 342 KPLEDTKNALAVALSKLDPGDSFNIVAFNGETY---L---FSTSME------LATKEAVERAHQWIGINFIAGGSTNICA 409 (613)
Q Consensus 342 ~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~---~---~~~~~~------~~~~~~~~~a~~~i~~~~~~~GgT~l~~ 409 (613)
...++|..++..+|.....+.+|-+..|+.... . .+++.. ...-+.+.++-...-......|-|++..
T Consensus 11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fap 90 (146)
T PF07002_consen 11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAP 90 (146)
T ss_pred CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHH
Confidence 467888999999999998888999999997632 1 122221 1122333333322223677789999999
Q ss_pred HHHHHHHHHhc---CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEec
Q 007207 410 PLTKAVEMLTN---SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIG 466 (613)
Q Consensus 410 aL~~A~~~l~~---~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG 466 (613)
-|+.|.+.... ....--.++++|||..+|..+..+.+.++ ....+.|..||+|
T Consensus 91 iI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~A----S~~PlSIIiVGVG 146 (146)
T PF07002_consen 91 IINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEA----SKLPLSIIIVGVG 146 (146)
T ss_pred HHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHH----ccCCeEEEEEEeC
Confidence 99999998763 22233478999999999988777766654 2345778888887
No 84
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.14 Score=58.18 Aligned_cols=226 Identities=14% Similarity=0.210 Sum_probs=130.2
Q ss_pred CCCCceEEEEEeCCCC--CCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeee--------------------
Q 007207 323 KVFKKDVIFIVDISGS--MQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFS-------------------- 377 (613)
Q Consensus 323 ~~~~~~vvfviD~SgS--M~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~-------------------- 377 (613)
...+-.++|+||+|-. |.| -...+-++++.+|..+. ++.+++|++|++..+.+.
T Consensus 414 ~p~ppafvFmIDVSy~Ai~~G-~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvf 492 (1007)
T KOG1984|consen 414 PPKPPAFVFMIDVSYNAISNG-AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVF 492 (1007)
T ss_pred CCCCceEEEEEEeehhhhhcc-hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccc
Confidence 5577899999999843 333 35667788888888775 478999999998765421
Q ss_pred -ccc----c--ccCHHHHHHHHHHHhhcCCCCCC--cchHHHHHHHHHHHhcCCCCccEEEEEe----------------
Q 007207 378 -TSM----E--LATKEAVERAHQWIGINFIAGGS--TNICAPLTKAVEMLTNSRGSIPIIFLVT---------------- 432 (613)
Q Consensus 378 -~~~----~--~~~~~~~~~a~~~i~~~~~~~Gg--T~l~~aL~~A~~~l~~~~~~~~~IillT---------------- 432 (613)
|+. . ..+..-++.+++.|...+...+- |-++.+|+.|+..+.... ..+.+++.|
T Consensus 493 vPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~-gGKl~vF~s~Lpt~g~g~kl~~r~D 571 (1007)
T KOG1984|consen 493 VPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD-GGKLFVFHSVLPTAGAGGKLSNRDD 571 (1007)
T ss_pred cccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC-CceEEEEecccccccCcccccccch
Confidence 110 1 11345566777777643333343 457899999999887553 233333332
Q ss_pred ------cCCcC---chhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHH---HHHHHH
Q 007207 433 ------DGAVE---DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSI---EIQMQK 500 (613)
Q Consensus 433 ------DG~~~---~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l---~~~l~~ 500 (613)
|++-+ ..+.....+...+-+.+ .++.+|..--+ .+|...|-.+...+||..+.-.....+ ...+..
T Consensus 572 ~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g-~svDlF~t~~a-yvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~nD 649 (1007)
T KOG1984|consen 572 RRLIGTDKEKNLLQPQDKTYTTLAKEFVESG-CSVDLFLTPNA-YVDVATLGVVPALTGGQVYKYYPFQALTDGPRLLND 649 (1007)
T ss_pred hhhhcccchhhccCcchhHHHHHHHHHHHhC-ceEEEEEcccc-eeeeeeecccccccCceeEEecchhhcccHHHHHHH
Confidence 22110 00112223333332222 34555554222 246666777888999996665554333 344556
Q ss_pred HHHHhccceeeeEEEEe--cCCCCceeec-------c--CCCCCCCCCCcEEEEEEEcCCCCC
Q 007207 501 LFTRGFSSVLANIAIDT--LKDLDEFEMY-------P--SRIPDLSSESPLIVSGRYQGKFPD 552 (613)
Q Consensus 501 ~~~~~~~p~l~~i~l~~--~~~~~~~~v~-------p--~~ip~l~~g~~~~v~g~~~~~~~~ 552 (613)
+...+..+.--++-++. ..++...+.+ + ..++.|-....+.|--++.++..+
T Consensus 650 L~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~ 712 (1007)
T KOG1984|consen 650 LVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQD 712 (1007)
T ss_pred HHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccccC
Confidence 66666666655544433 3333222221 2 256677778888888888776553
No 85
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=97.08 E-value=0.044 Score=55.69 Aligned_cols=171 Identities=15% Similarity=0.164 Sum_probs=102.3
Q ss_pred ceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcc-eeeecccc------c-------cC
Q 007207 327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGET-YLFSTSME------L-------AT 384 (613)
Q Consensus 327 ~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~-~~~~~~~~------~-------~~ 384 (613)
.-+++|||++..-.+ ..+..+-+++..|++. +....++.||+.+... +.+.|... . .+
T Consensus 2 SLLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~ 81 (276)
T PF03850_consen 2 SLLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSD 81 (276)
T ss_pred cEEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCcccccccc
Confidence 347899999876553 2566777777777754 5678899999987764 33333322 0 00
Q ss_pred ----------HHHHHHHHHHHhhcCC----CCCCcchHHHHHHHHHHHhcCC--------CCccEEEEEecCCcCchhHH
Q 007207 385 ----------KEAVERAHQWIGINFI----AGGSTNICAPLTKAVEMLTNSR--------GSIPIIFLVTDGAVEDERQI 442 (613)
Q Consensus 385 ----------~~~~~~a~~~i~~~~~----~~GgT~l~~aL~~A~~~l~~~~--------~~~~~IillTDG~~~~~~~~ 442 (613)
.+.+.+.+..+..... ....+.+..||..|+-.+++.. .-..+|+++.-+.++...+.
T Consensus 82 ~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QY 161 (276)
T PF03850_consen 82 SNKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQY 161 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHH
Confidence 1111121111111111 1112788999999988776431 12235555234444444444
Q ss_pred HHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHH
Q 007207 443 CDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQ 499 (613)
Q Consensus 443 ~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~ 499 (613)
...+.-... +.+.++.|-++-+|. .+..+|++.+..|||.|..+.+.+.+-+-+.
T Consensus 162 i~~MN~iFa-Aqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q~L~ 216 (276)
T PF03850_consen 162 IPLMNCIFA-AQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQYLL 216 (276)
T ss_pred HHHHHHHHH-HhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHHHHH
Confidence 444433322 234558899999988 4788999999999999999998776654433
No 86
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=96.91 E-value=0.012 Score=58.43 Aligned_cols=172 Identities=12% Similarity=0.158 Sum_probs=102.2
Q ss_pred CCceEEEEEeCCCCCCCCcH-----HHHHHHHHHHHHh---CCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHh
Q 007207 325 FKKDVIFIVDISGSMQGKPL-----EDTKNALAVALSK---LDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG 396 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~-----~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~ 396 (613)
.-+.+++++|+|.+|....+ ....+-+..|+-. -+|-.+.+|+...+........+ ..+.+ .-+..+.
T Consensus 86 IiRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~-~gnpq---~hi~~lk 161 (421)
T COG5151 86 IIRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSM-DGNPQ---AHIGQLK 161 (421)
T ss_pred hhheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhc-CCCHH---HHHHHhh
Confidence 34789999999999986432 2222222223222 23456788887776543222211 12344 3444444
Q ss_pred hcCCCCCCcchHHHHHHHHHHHhcCC-CCcc-EEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207 397 INFIAGGSTNICAPLTKAVEMLTNSR-GSIP-IIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (613)
Q Consensus 397 ~~~~~~GgT~l~~aL~~A~~~l~~~~-~~~~-~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L 474 (613)
+.....|.-.+..||+.|.-.+.... ...+ ++|++..=...|+.++.+.+...+. .++|+..||+.. .-...
T Consensus 162 S~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~----~~IrV~~igL~a--evaic 235 (421)
T COG5151 162 SKRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETIDKLVA----YNIRVHFIGLCA--EVAIC 235 (421)
T ss_pred cccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHHHHHHh----hceEEEEEeehh--HHHHH
Confidence 33467888899999999955544332 2233 3444433333455566665555443 348999999865 45678
Q ss_pred HHHHHhc----CcEEEEcCCCcHHHHHHHHHHHHhcccee
Q 007207 475 RMLAMIS----RGYYGAAYDLDSIEIQMQKLFTRGFSSVL 510 (613)
Q Consensus 475 ~~lA~~~----gG~~~~v~~~~~l~~~l~~~~~~~~~p~l 510 (613)
+.|..++ .|.|+..-|...+ ..++.++..|.-
T Consensus 236 KeickaTn~~~e~~y~v~vde~Hl----~el~~E~~~P~~ 271 (421)
T COG5151 236 KEICKATNSSTEGRYYVPVDEGHL----SELMRELSHPTD 271 (421)
T ss_pred HHHHhhcCcCcCceeEeeecHHHH----HHHHHhcCCCCC
Confidence 8998887 6888887776554 455666666653
No 87
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.0085 Score=59.91 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=74.6
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcc
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTN 406 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~ 406 (613)
..++.++|+||||....++++..-+..++ -.++.+..++.-++.++....... -+++...+..+|||+
T Consensus 262 ~~i~vaVDtSGS~~d~ei~a~~~Ei~~Il--~~~~~eltli~~D~~v~~~~~~r~----------g~~~~~~~~ggG~Td 329 (396)
T COG3864 262 IKIVVAVDTSGSMTDAEIDAAMTEIFDIL--KNKNYELTLIECDNIVRRMYRVRK----------GRDMKKKLDGGGGTD 329 (396)
T ss_pred hheEEEEecCCCccHHHHHHHHHHHHHHH--hCCCcEEEEEEecchhhhhhccCC----------cccCCcccCCCCCcc
Confidence 34889999999998766776666666666 235778888888887654332211 123333456677899
Q ss_pred hHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207 407 ICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (613)
Q Consensus 407 l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~ 476 (613)
+..++...-+.. .....|++|||.-..+.. ....+-++++.-|...+..|+..
T Consensus 330 f~Pvfeylek~~-----~~~~lIyfTDG~gd~p~~------------~r~~~~lwVl~~~~~e~e~f~~e 382 (396)
T COG3864 330 FSPVFEYLEKNR-----MECFLIYFTDGMGDQPLV------------FRPKVLLWVLTGAKGEVEKFKNE 382 (396)
T ss_pred ccHHHHHHHhhc-----ccceEEEEccCCCCcccc------------cCCcceEEEecCCccchhccchH
Confidence 999877544332 125789999998543321 01124566665544445555443
No 88
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=96.39 E-value=0.045 Score=61.87 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=72.4
Q ss_pred CceEEEEEeCCCCCCC--------CcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcce----------eeeccccccC
Q 007207 326 KKDVIFIVDISGSMQG--------KPLEDTKNALAVALSKL---DPGDSFNIVAFNGETY----------LFSTSMELAT 384 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g--------~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~----------~~~~~~~~~~ 384 (613)
.--|+|+||+|.||.. .++..+.+++..++.+. .++|.+||+.||++.. .+.++. ..+
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~-~p~ 88 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELD-NPG 88 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCC-CCC
Confidence 4568999999999984 36788888888888663 4789999999998632 133332 234
Q ss_pred HHHHHHHHHHHhhcC------CCCCC--cchHHHHHHHHHHHhcCC--CCccEEEEEecCCc
Q 007207 385 KEAVERAHQWIGINF------IAGGS--TNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAV 436 (613)
Q Consensus 385 ~~~~~~a~~~i~~~~------~~~Gg--T~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~ 436 (613)
.+.+.+..+.+.... ..+.+ ..+..+|..|.+++.... -..+.|+++||-..
T Consensus 89 a~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~ 150 (584)
T TIGR00578 89 AKRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDN 150 (584)
T ss_pred HHHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCC
Confidence 455444333222100 01111 378999999999997522 23578999999753
No 89
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.026 Score=57.37 Aligned_cols=137 Identities=19% Similarity=0.175 Sum_probs=84.5
Q ss_pred CCCCCCceEEEEEeCCCCCCCC----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHh
Q 007207 321 SRKVFKKDVIFIVDISGSMQGK----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG 396 (613)
Q Consensus 321 ~~~~~~~~vvfviD~SgSM~g~----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~ 396 (613)
..++.++.+++.+|.|+||... .+..-..|....+-.+......-.++|.+..... |++. .-.+.+...+++
T Consensus 422 na~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~lte~-pftk---d~kigqv~~~~n 497 (598)
T KOG4465|consen 422 NAEPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDELTEC-PFTK---DMKIGQVLDAMN 497 (598)
T ss_pred cCCCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEeccccccC-CCcc---cccHHHHHHHHh
Confidence 3466789999999999999843 3332222222233345555567789999876542 3333 234455555554
Q ss_pred hcCCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207 397 INFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGS 467 (613)
Q Consensus 397 ~~~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~ 467 (613)
+ -..|||+-+-++.+|-+. .-...+.|++||.... ++-.....+++.....+-.+.++.+.++-.
T Consensus 498 -n-i~~g~tdcglpm~wa~en----nlk~dvfii~tdndt~ageihp~~aik~yrea~~i~dakliv~amqa 563 (598)
T KOG4465|consen 498 -N-IDAGGTDCGLPMIWAQEN----NLKADVFIIFTDNDTFAGEIHPAEAIKEYREAMDIHDAKLIVCAMQA 563 (598)
T ss_pred -c-CCCCCCccCCceeehhhc----CCCccEEEEEecCcccccccCHHHHHHHHHHhcCCCcceEEEEEeec
Confidence 3 356899998888877553 1234578899998764 333445566666555444446677776643
No 90
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=96.23 E-value=2.6 Score=47.74 Aligned_cols=175 Identities=17% Similarity=0.241 Sum_probs=97.5
Q ss_pred EEEecCCCCCCCCCCceEEEEEeCCC-CCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeecccc------
Q 007207 312 MYLLPGTAKSRKVFKKDVIFIVDISG-SMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSME------ 381 (613)
Q Consensus 312 ~~~~P~~~~~~~~~~~~vvfviD~Sg-SM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~------ 381 (613)
=++.|+.-....+.|..+||+||+|- ||...-...+-+++...++.++ +..+++++.|++..+.+.....
T Consensus 262 df~ap~~Y~~~~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~ 341 (861)
T COG5028 262 DFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQML 341 (861)
T ss_pred EEecccceeeccCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCcccee
Confidence 36778776556677999999999993 3433345555666666665553 5789999999997654321100
Q ss_pred ----------ccC-----------HHHHHHHHHHHhhcCCCCCC--cchHHHHHHHHHHHhcCCCCccEEEEEec-----
Q 007207 382 ----------LAT-----------KEAVERAHQWIGINFIAGGS--TNICAPLTKAVEMLTNSRGSIPIIFLVTD----- 433 (613)
Q Consensus 382 ----------~~~-----------~~~~~~a~~~i~~~~~~~Gg--T~l~~aL~~A~~~l~~~~~~~~~IillTD----- 433 (613)
+.. ...++..++.+.......+. -.++.||+.|..++....+ +.|++++-
T Consensus 342 ~vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~GG--kii~~~stlPn~G 419 (861)
T COG5028 342 IVSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGG--KIIVFLSTLPNMG 419 (861)
T ss_pred eecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhccCc--eEEEEeecCCCcc
Confidence 000 11222344444422233333 3579999999988765443 35555532
Q ss_pred -CCcC----c-------hhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCC
Q 007207 434 -GAVE----D-------ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYD 490 (613)
Q Consensus 434 -G~~~----~-------~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~ 490 (613)
|... + .....+.+...+.+.+ +.+.+|...-+ ..+...|..+++.++|..++-..
T Consensus 420 ~Gkl~~r~d~e~~ll~c~d~fYk~~a~e~~k~g-Isvd~Flt~~~-yidvaTls~l~~~T~G~~~~Yp~ 486 (861)
T COG5028 420 IGKLQLREDKESSLLSCKDSFYKEFAIECSKVG-ISVDLFLTSED-YIDVATLSHLCRYTGGQTYFYPN 486 (861)
T ss_pred cccccccccchhhhccccchHHHHHHHHHHHhc-ceEEEEecccc-ccchhhhcchhhccCcceEEcCC
Confidence 3322 1 1111222333332222 23344443222 34667889999999998655433
No 91
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.19 Score=46.74 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=92.2
Q ss_pred ceEEEEEeCCCCCC-C----CcHHHHHHHHHHHHHh-C--CCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhh
Q 007207 327 KDVIFIVDISGSMQ-G----KPLEDTKNALAVALSK-L--DPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGI 397 (613)
Q Consensus 327 ~~vvfviD~SgSM~-g----~~~~~ak~al~~~l~~-L--~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~ 397 (613)
-..+++||.|--|. | +|++.-|+++..++.. . .+...++++.-... ...+...+. . .-..+.++.
T Consensus 4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~--~---~gkilt~lh- 77 (243)
T COG5148 4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTK--Q---RGKILTFLH- 77 (243)
T ss_pred ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchh--h---hhHHHHHhc-
Confidence 45789999986665 3 4889999999988854 3 35678999988764 334433322 2 233445554
Q ss_pred cCCCCCCcchHHHHHHHHHHHhcCCCC--cc-EEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207 398 NFIAGGSTNICAPLTKAVEMLTNSRGS--IP-IIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (613)
Q Consensus 398 ~~~~~GgT~l~~aL~~A~~~l~~~~~~--~~-~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L 474 (613)
.+...|+.++..+|+.|.-.++.+.+. +. .|.++..-...++++.+..+++..++ ++-|-.|-+|...|...|
T Consensus 78 d~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkkn----nVAidii~fGE~~n~~~l 153 (243)
T COG5148 78 DIRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKN----NVAIDIIFFGEAANMAGL 153 (243)
T ss_pred cccccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhc----CeeEEEEehhhhhhhhHH
Confidence 677899999999999998888765433 23 34444333335566667666665433 377888888876666554
Q ss_pred HHH
Q 007207 475 RML 477 (613)
Q Consensus 475 ~~l 477 (613)
...
T Consensus 154 ~ef 156 (243)
T COG5148 154 FEF 156 (243)
T ss_pred HHH
Confidence 443
No 92
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=95.80 E-value=0.97 Score=43.40 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHh---CCCCCeEEEEE-eCCcceeeeccccc---------------------cCHHHHHHHHHHHhhc
Q 007207 344 LEDTKNALAVALSK---LDPGDSFNIVA-FNGETYLFSTSMEL---------------------ATKEAVERAHQWIGIN 398 (613)
Q Consensus 344 ~~~ak~al~~~l~~---L~~~d~~~Ii~-F~~~~~~~~~~~~~---------------------~~~~~~~~a~~~i~~~ 398 (613)
.....+.+.-||+. ...+.|+++++ |+...+.+.|.... .+...+.+....+...
T Consensus 43 ~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~ 122 (296)
T COG5242 43 RDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHP 122 (296)
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCc
Confidence 44555555556643 34678888875 44444444443221 1222334444444322
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCCCC---ccEEEEEec-CCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNSRGS---IPIIFLVTD-GAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~~~~---~~~IillTD-G~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L 474 (613)
-...-.+.++.|+..++......... ...|+++|= |...- .+.+..+.-.. .+.+.+++|.++.|+.+ ..+|
T Consensus 123 ~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~~-~qYip~mnCiF-~Aqk~~ipI~v~~i~g~--s~fl 198 (296)
T COG5242 123 HKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDRK-DQYIPYMNCIF-AAQKFGIPISVFSIFGN--SKFL 198 (296)
T ss_pred ccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchhh-hhhchhhhhee-ehhhcCCceEEEEecCc--cHHH
Confidence 22334588899999988877654332 235556665 63211 11222221111 12234578888888763 6799
Q ss_pred HHHHHhcCcEEEEcCCCcHHHHH
Q 007207 475 RMLAMISRGYYGAAYDLDSIEIQ 497 (613)
Q Consensus 475 ~~lA~~~gG~~~~v~~~~~l~~~ 497 (613)
.+-+.++||.|..+.+.+.+-+-
T Consensus 199 ~Q~~daTgG~Yl~ve~~eGllqy 221 (296)
T COG5242 199 LQCCDATGGDYLTVEDTEGLLQY 221 (296)
T ss_pred HHHhhccCCeeEeecCchhHHHH
Confidence 99999999999999998866443
No 93
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.11 Score=53.75 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=89.2
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST 405 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT 405 (613)
.-++-++|+||||....-+.||.....+---|. .-.++-|+.-.+....+ ..+... +. ...-.|||
T Consensus 247 AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~-----EVdE~d------FF--~~~esGGT 313 (423)
T COG2718 247 AVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAK-----EVDETD------FF--YSQESGGT 313 (423)
T ss_pred eEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCcce-----ecchhh------ce--eecCCCCe
Confidence 334456899999988777777775443322233 24456666555544322 112221 11 23457999
Q ss_pred chHHHHHHHHHHHhcC-C--CCccEEEEEecCCcC--chhHHHHHHHHHHHcCCCCCceEEEEE-ecCCCCHHHH--HHH
Q 007207 406 NICAPLTKAVEMLTNS-R--GSIPIIFLVTDGAVE--DERQICDAMKSRLTNGGSICPRIYTFG-IGSYCNHYFL--RML 477 (613)
Q Consensus 406 ~l~~aL~~A~~~l~~~-~--~~~~~IillTDG~~~--~~~~~~~~~~~~~~~~~~~~~~i~tig-iG~~~~~~~L--~~l 477 (613)
-+..||+.+.+.+... + .-+...+-.+||..+ |...+...+.+.+-.. +..|+.+ |-....+..| +.+
T Consensus 314 ivSSAl~~m~evi~ErYp~aeWNIY~fqaSDGDN~~dDserc~~ll~~~im~~----~~~y~Y~Eitq~~~H~t~~y~~~ 389 (423)
T COG2718 314 IVSSALKLMLEVIKERYPPAEWNIYAFQASDGDNWADDSERCVELLAKKLMPV----VQYYGYIEITQRRTHQTLEYEAL 389 (423)
T ss_pred EeHHHHHHHHHHHHhhCChhheeeeeeeecCCccccCCCHHHHHHHHHHHHHh----hhheEEEeeeecccchhhhhhhh
Confidence 9999999999999763 1 224577889999974 3344444444232211 2233332 1111122222 111
Q ss_pred HHhc-CcEEEEcCCCcHHHHHHHHHHHHh
Q 007207 478 AMIS-RGYYGAAYDLDSIEIQMQKLFTRG 505 (613)
Q Consensus 478 A~~~-gG~~~~v~~~~~l~~~l~~~~~~~ 505 (613)
-... +=....+.+.+++-.+|.++|.+-
T Consensus 390 ~~~~dnFa~~~I~~~~Diypvfr~lf~ke 418 (423)
T COG2718 390 QGVFDNFAMQTIREPDDIYPVFRELFSKE 418 (423)
T ss_pred hccCcchheeeecCHHHHHHHHHHHHhcc
Confidence 1111 122456778888888888888653
No 94
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=95.25 E-value=0.38 Score=52.11 Aligned_cols=187 Identities=16% Similarity=0.194 Sum_probs=96.0
Q ss_pred ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHH---HHHHHHHhCCCCCeEEEEEeCCccee-ee------
Q 007207 308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKN---ALAVALSKLDPGDSFNIVAFNGETYL-FS------ 377 (613)
Q Consensus 308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~---al~~~l~~L~~~d~~~Ii~F~~~~~~-~~------ 377 (613)
-.|-+.+.|. +..|.|+++|+|.|+||.. .++..|. .+..-++.+..+-|+++-+|-+.... +.
T Consensus 89 ~~f~v~~~~a-----~~yPvDLYyLmDlS~Sm~d-dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~ 162 (426)
T PF00362_consen 89 VTFNVTVRPA-----EDYPVDLYYLMDLSYSMKD-DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEK 162 (426)
T ss_dssp EEEEEEEEBS-----SS--EEEEEEEE-SGGGHH-HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHC
T ss_pred EEEEEEEeec-----cccceeEEEEeechhhhhh-hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhh
Confidence 3466666655 3479999999999999975 4555553 33444556677889999998776321 00
Q ss_pred ---cc-----------------ccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHH---HHHhcCCCCccEEEE
Q 007207 378 ---TS-----------------MELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAV---EMLTNSRGSIPIIFL 430 (613)
Q Consensus 378 ---~~-----------------~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~---~~l~~~~~~~~~Iil 430 (613)
|. ....+.....++++ .....|+-+- ..||-.|. +.+.=+.+.++.+|+
T Consensus 163 l~~pc~~~~~~c~~~~~f~~~l~Lt~~~~~F~~~v~----~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~ 238 (426)
T PF00362_consen 163 LKNPCPSKNPNCQPPFSFRHVLSLTDDITEFNEEVN----KQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVF 238 (426)
T ss_dssp HHSTSCCTTS--B---SEEEEEEEES-HHHHHHHHH----TS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEE
T ss_pred hcCcccccCCCCCCCeeeEEeecccchHHHHHHhhh----hccccCCCCCCccccchheeeeecccccCcccCceEEEEE
Confidence 00 00113334444443 2333332221 22333332 223224456789999
Q ss_pred EecCCcC---ch----------------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207 431 VTDGAVE---DE----------------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479 (613)
Q Consensus 431 lTDG~~~---~~----------------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~ 479 (613)
.||+... |+ -.....+.+.+.+.+ -..||+| ... -....+.|+.
T Consensus 239 ~TD~~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~--i~~IFAV--t~~-~~~~Y~~L~~ 313 (426)
T PF00362_consen 239 STDAGFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENN--INPIFAV--TKD-VYSIYEELSN 313 (426)
T ss_dssp EESS-B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTT--EEEEEEE--EGG-GHHHHHHHHH
T ss_pred EcCCccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcC--CEEEEEE--chh-hhhHHHHHhh
Confidence 9998642 00 012344555554432 1346665 332 3346677777
Q ss_pred hcCcEEEE-c-CCCcHHHHHHHHHHHHhccce
Q 007207 480 ISRGYYGA-A-YDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 480 ~~gG~~~~-v-~~~~~l~~~l~~~~~~~~~p~ 509 (613)
.-.|...- . .|.+.+.+.+...+.++.+.+
T Consensus 314 ~i~~s~vg~L~~dSsNIv~LI~~aY~~i~s~V 345 (426)
T PF00362_consen 314 LIPGSSVGELSSDSSNIVQLIKEAYNKISSKV 345 (426)
T ss_dssp HSTTEEEEEESTTSHTHHHHHHHHHHHHCTEE
T ss_pred cCCCceecccccCchhHHHHHHHHHHHHhheE
Confidence 66665543 3 334568888888888887654
No 95
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=94.81 E-value=0.26 Score=48.16 Aligned_cols=112 Identities=15% Similarity=0.283 Sum_probs=65.5
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHH-HHHHHHHhCC-------------CCCeEEEEEeCCcceeeeccc-cccCHHH
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKN-ALAVALSKLD-------------PGDSFNIVAFNGETYLFSTSM-ELATKEA 387 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~-al~~~l~~L~-------------~~d~~~Ii~F~~~~~~~~~~~-~~~~~~~ 387 (613)
+...+++|||||.+..|.. -|...|. -+.-+++.+. ....++||.|++..-.-.+.. ...-..+
T Consensus 10 ~~~~~~vVfvvEgTAalgp-y~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~ 88 (226)
T PF11265_consen 10 QPPQAQVVFVVEGTAALGP-YWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSS 88 (226)
T ss_pred cCccceEEEEEecchhhhh-hHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCC
Confidence 4567999999999999974 3444443 2333343332 235689999998632110000 0011123
Q ss_pred HHHHHHHHhhcCC-CCCC----cchHHHHHHHHHHHhcCC---------CCccEEEEEecCCc
Q 007207 388 VERAHQWIGINFI-AGGS----TNICAPLTKAVEMLTNSR---------GSIPIIFLVTDGAV 436 (613)
Q Consensus 388 ~~~a~~~i~~~~~-~~Gg----T~l~~aL~~A~~~l~~~~---------~~~~~IillTDG~~ 436 (613)
....++||+ .+. .+|| +.+.+||..|++++.... ...+..||++--.+
T Consensus 89 ~~~fl~~L~-~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP 150 (226)
T PF11265_consen 89 PQKFLQWLD-AIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPP 150 (226)
T ss_pred HHHHHHHHH-ccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCC
Confidence 445556665 333 3333 348899999999886311 12578899987765
No 96
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=94.57 E-value=0.28 Score=53.30 Aligned_cols=105 Identities=21% Similarity=0.292 Sum_probs=69.8
Q ss_pred CCceEEEEEeCCCCCCC-----CcHHHHHHHHHHHH-HhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc
Q 007207 325 FKKDVIFIVDISGSMQG-----KPLEDTKNALAVAL-SKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN 398 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g-----~~~~~ak~al~~~l-~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~ 398 (613)
...++++++|+|.||.. .+++.+..++..+. ..+..+|++++..|+.....+.+... ..+.+...++.+. .
T Consensus 223 r~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p~~--G~~~l~~~l~~l~-~ 299 (416)
T COG1721 223 RGRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPPSR--GRRHLARILKALA-L 299 (416)
T ss_pred cCceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCCCc--chHHHHHHHHHhh-c
Confidence 47899999999999993 57888877776654 45678999999999987655554433 6667777777765 4
Q ss_pred CCCCCC-cchHHHHHHHHHHHhcCCCCccEEEEEecCCc
Q 007207 399 FIAGGS-TNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV 436 (613)
Q Consensus 399 ~~~~Gg-T~l~~aL~~A~~~l~~~~~~~~~IillTDG~~ 436 (613)
....+. |+...+... ...+ ....+.++++||=..
T Consensus 300 ~~~~~~~~~~~~~~~~-~~~l---~~~~~~~~~~~~l~~ 334 (416)
T COG1721 300 LRPAPEETDYIRRVSK-LDFL---PPRRPLVILITDLAR 334 (416)
T ss_pred cCCCCcchhHHHHhhh-hhcc---CcccceEEEeehhhc
Confidence 444443 444444322 1221 223457788887654
No 97
>PF14415 DUF4424: Domain of unknown function (DUF4424)
Probab=94.38 E-value=0.38 Score=48.23 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=41.8
Q ss_pred EEEEEEEEEecccCCCceeeEEEEeecCC--------Cc----------eEEEEEEEECCEEEEEEEeecc
Q 007207 103 FVRVSGTWRVHCVMGSKSCDCRIAVPMGD--------QG----------SILGVEAEISGKSYHTQLIALG 155 (613)
Q Consensus 103 ~v~v~~~f~n~~~~~~~~~e~~y~FPL~~--------~a----------~V~~f~~~i~~r~i~g~v~ek~ 155 (613)
+|+|..+|.| +++++++....||||+ .+ .|.+|.+.||||.+..++..+.
T Consensus 2 ~I~V~Y~F~N---~t~~dv~~~VaFPlP~i~~~~~~d~~~~~p~~~~~n~i~~Fk~~VdGk~v~~q~~~ra 69 (253)
T PF14415_consen 2 RIRVRYVFRN---PTDQDVTVTVAFPLPDISGSPENDFAIAIPDNDSDNFIKDFKTTVDGKPVKPQVHQRA 69 (253)
T ss_pred EEEEEEEEeC---CCCCcEEEEEEEeCCCCCCCccccccccccccCCcCccceEEEEECCEEcCceeEEEE
Confidence 5789999999 7899999999999993 12 4667999999999999885544
No 98
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=7.6 Score=43.71 Aligned_cols=175 Identities=16% Similarity=0.219 Sum_probs=101.8
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceee------------eccccccCHHH-----
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLF------------STSMELATKEA----- 387 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~------------~~~~~~~~~~~----- 387 (613)
.|--++||||+- |..+.++.+|+++...++.|+++..+++|+|+..+++. +......+.+.
T Consensus 120 ~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~L 197 (745)
T KOG1986|consen 120 SPPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDLL 197 (745)
T ss_pred CCceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHHh
Confidence 466789999975 55578999999999999999999999999999876542 11111122222
Q ss_pred -----------------------------HHHHHHHHhhcC--CCCCCc---chHHHHHHHHHHHhc-CCCCccEEEEEe
Q 007207 388 -----------------------------VERAHQWIGINF--IAGGST---NICAPLTKAVEMLTN-SRGSIPIIFLVT 432 (613)
Q Consensus 388 -----------------------------~~~a~~~i~~~~--~~~GgT---~l~~aL~~A~~~l~~-~~~~~~~IillT 432 (613)
+.+.++.|.... .+.|.- -.+.||..|..++.. .++....|++++
T Consensus 198 ~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~ 277 (745)
T KOG1986|consen 198 GLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCFPNTGARIVLFA 277 (745)
T ss_pred cCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccCCCCcceEEEec
Confidence 222222222100 011211 235566666666543 234456788888
Q ss_pred cCCcCc-----------------------h----h---HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcC
Q 007207 433 DGAVED-----------------------E----R---QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISR 482 (613)
Q Consensus 433 DG~~~~-----------------------~----~---~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~g 482 (613)
-|--+. . . ...+.+.+.+.+.+ .-+.||+-++-. +.-..|+.+++.+|
T Consensus 278 gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~g-hvlDifa~~lDQ-vGi~EMk~l~~~TG 355 (745)
T KOG1986|consen 278 GGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQG-HVLDIFAAALDQ-VGILEMKPLVESTG 355 (745)
T ss_pred cCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCC-ceEeeeeeeccc-cchHHHHHHhhcCC
Confidence 884210 0 0 11122333333222 335666665533 35567999999999
Q ss_pred cEEEEcCCCc--HHHHHHHHHHH
Q 007207 483 GYYGAAYDLD--SIEIQMQKLFT 503 (613)
Q Consensus 483 G~~~~v~~~~--~l~~~l~~~~~ 503 (613)
|....-.+.+ -....+++++.
T Consensus 356 G~lvl~dsF~~s~Fk~sfqR~f~ 378 (745)
T KOG1986|consen 356 GVLVLGDSFNTSIFKQSFQRIFT 378 (745)
T ss_pred cEEEEecccchHHHHHHHHHHhc
Confidence 9988766654 33455555554
No 99
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=91.02 E-value=11 Score=37.64 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=91.2
Q ss_pred CCceEEEEEeCCC---CCC----C-CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcce-eeecc-------------
Q 007207 325 FKKDVIFIVDISG---SMQ----G-KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY-LFSTS------------- 379 (613)
Q Consensus 325 ~~~~vvfviD~Sg---SM~----g-~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~-~~~~~------------- 379 (613)
.+.-++++||.+. -|. + ..+....+++..|++. ...+.++.|++..++.. .+.|.
T Consensus 22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 4667889999987 222 1 2456666677666653 34688999999865532 11110
Q ss_pred -c----------cccCHHHHHHHHHHHhhcCC-C-CCCcchHHHHHHHHHHHhcC---C---CCccEEEEEecCCcCchh
Q 007207 380 -M----------ELATKEAVERAHQWIGINFI-A-GGSTNICAPLTKAVEMLTNS---R---GSIPIIFLVTDGAVEDER 440 (613)
Q Consensus 380 -~----------~~~~~~~~~~a~~~i~~~~~-~-~GgT~l~~aL~~A~~~l~~~---~---~~~~~IillTDG~~~~~~ 440 (613)
+ ...+..-+.+....+..... . +..|-+..|+..++...... . .-..+|+++|=+.....+
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~q 181 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQ 181 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHhh
Confidence 0 00111111222222211101 1 11455556665555443221 1 113467888876543221
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHH
Q 007207 441 QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEI 496 (613)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~ 496 (613)
....+.-... +.+.+++|.++.+|++ ..+|++-+..|||.|..+...+.+-+
T Consensus 182 -yi~~MNciFa-AqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gLLq 233 (314)
T KOG2487|consen 182 -YIPYMNCIFA-AQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGLLQ 233 (314)
T ss_pred -hhhHHHHHHH-HHhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcchHHH
Confidence 1222211111 1234588999999875 67999999999999999998876543
No 100
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=87.08 E-value=8.7 Score=47.93 Aligned_cols=173 Identities=14% Similarity=0.177 Sum_probs=100.4
Q ss_pred ceEEEEEeCCCCCCCCc-HHHHHHHH---HHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 327 KDVIFIVDISGSMQGKP-LEDTKNAL---AVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~-~~~ak~al---~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
-.|++-||-|.||+..+ -..|.+.+ ...|..|. -..++|+-|+...+.+.|+-.+.+.+.-.++..|.. --.
T Consensus 4393 yqvmisiddsksmses~~~~la~etl~lvtkals~le-~g~iav~kfge~~~~lh~fdkqfs~esg~~~f~~f~---feq 4468 (4600)
T COG5271 4393 YQVMISIDDSKSMSESGSTVLALETLALVTKALSLLE-VGQIAVMKFGEQPELLHPFDKQFSSESGVQMFSHFT---FEQ 4468 (4600)
T ss_pred eEEEEEecccccccccCceeeehHHHHHHHHHHHHHh-hccEEEEecCCChhhhCchhhhhcchHHHHHHHhhc---hhc
Confidence 46888999999998642 11222222 22333343 457899999999998888777777776666776653 223
Q ss_pred CCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH--
Q 007207 403 GSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR-- 475 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~-- 475 (613)
..||..+-....++.+... .+....=|+++||.-.+-+.+...++++..+. -.-+|+|-=|-..+...|.
T Consensus 4469 s~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgicedhdsi~kllrra~e~k---vmivfvild~v~t~~sildi~ 4545 (4600)
T COG5271 4469 SNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICEDHDSIRKLLRRAQEEK---VMIVFVILDNVNTQKSILDIK 4545 (4600)
T ss_pred ccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCcccchHHHHHHHHHhhhcc---eEEEEEEecCCccchhhhhhH
Confidence 5677655444444444321 12244668999999888777777776654321 1234554323222232222
Q ss_pred ------------------HHHHhcCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207 476 ------------------MLAMISRGYYGAAYDLDSIEIQMQKLFTRGF 506 (613)
Q Consensus 476 ------------------~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~ 506 (613)
.|-+..-..|..+.+-+++++.+...+++-.
T Consensus 4546 kv~y~~~e~g~~~lki~~yid~f~fd~ylvv~ni~elpqlls~~lrq~f 4594 (4600)
T COG5271 4546 KVYYDTKEDGTMDLKIQPYIDEFAFDYYLVVRNIEELPQLLSSALRQWF 4594 (4600)
T ss_pred hhccccccCCCcceeeeechhcccceeEEEeccHHHHHHHHHHHHHHHH
Confidence 1111222345666777777776665555443
No 101
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=80.48 E-value=5 Score=45.63 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=40.1
Q ss_pred cceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHH---HHHHHHHHhCCCCCeEEEEEeCCc
Q 007207 307 REMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTK---NALAVALSKLDPGDSFNIVAFNGE 372 (613)
Q Consensus 307 ~~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak---~al~~~l~~L~~~d~~~Ii~F~~~ 372 (613)
...|.+.+.+.. .-|.|+++|+|.|-||..+ ++..+ ..|..-++.|..+-|++.-.|=+.
T Consensus 118 ~~~f~l~~r~a~-----~yPVDLYyLMDlS~SM~DD-l~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK 180 (783)
T KOG1226|consen 118 EQTFQLKVRQAE-----DYPVDLYYLMDLSYSMKDD-LENLKSLGTDLAREMRKLTSNFRLGFGSFVDK 180 (783)
T ss_pred ceeEEEEEeecc-----CCCeeEEEEeecchhhhhh-HHHHHHHHHHHHHHHHHHhccCCccccchhcc
Confidence 345666665543 3689999999999999863 44444 444445556666777776666554
No 102
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=71.58 E-value=26 Score=34.48 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207 408 CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (613)
Q Consensus 408 ~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~ 470 (613)
.++|..+++...+..+..-.+=|+|||.+..-.+-+..+.+.+.+.+-..+.||+|.=|.++.
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~ 75 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTP 75 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCC
Confidence 457777777766555556677888888875544434444444444444446678887776653
No 103
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.07 E-value=64 Score=35.26 Aligned_cols=90 Identities=13% Similarity=0.176 Sum_probs=56.9
Q ss_pred EEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCC--CceEEEEEEEECCEEEEEEE-eecccccccccccccccCCc
Q 007207 95 VDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGD--QGSILGVEAEISGKSYHTQL-IALGENDGAGKSASVETGSF 171 (613)
Q Consensus 95 v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~--~a~V~~f~~~i~~r~i~g~v-~ek~~A~~~~~~~~~~~~~l 171 (613)
|+-.-+.+++++..+..| .++.+ ...|.|.||. ...+..+++..+++...... .++.+.. .+.
T Consensus 11 idl~~~~vk~~~~i~i~N---~g~~p-~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~------~~~---- 76 (432)
T PF04597_consen 11 IDLSKSYVKETIEITIKN---IGDEP-VSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVN------SGS---- 76 (432)
T ss_pred EEccCcEEEEEEEEEEEE---CCCCC-ceEEEEEECchhhccEEEEEEEECCCcccccccccccccc------CCC----
Confidence 333336789999999999 66666 4566666665 45777888887775444333 1111110 000
Q ss_pred ccCCeeEEecC-CCCCCCEEEEEEEEEEE
Q 007207 172 LKPNIFTLTLP-QIDGGSYLSIRLRWSQK 199 (613)
Q Consensus 172 l~~n~F~~~V~-ni~p~~~v~v~i~Y~q~ 199 (613)
.-+.|.+.+. +|.||++++++++|...
T Consensus 77 -~~~~~~i~L~~pl~~~~~~~l~v~~~~~ 104 (432)
T PF04597_consen 77 -EIKYYEITLPKPLAPGEKVTLTVEYVLT 104 (432)
T ss_pred -CcceEEEECCCCCCCCCEEEEEEEEEec
Confidence 0123888887 58899999999999753
No 104
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=66.52 E-value=1.4e+02 Score=33.37 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=71.8
Q ss_pred ceEEEEEeCCCCCCC------CcHHHHHHHHHHHHHh--C--CCCCeEEEEEeCCccee--------------eeccccc
Q 007207 327 KDVIFIVDISGSMQG------KPLEDTKNALAVALSK--L--DPGDSFNIVAFNGETYL--------------FSTSMEL 382 (613)
Q Consensus 327 ~~vvfviD~SgSM~g------~~~~~ak~al~~~l~~--L--~~~d~~~Ii~F~~~~~~--------------~~~~~~~ 382 (613)
.-.+|++|.+.||+- ..+++++..+..++.. + +..|-|+++.|+.+... ..+.+.+
T Consensus 5 e~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~~tp 84 (669)
T KOG2326|consen 5 ESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPVTTP 84 (669)
T ss_pred cceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecccch
Confidence 345677799999984 3689999998887743 2 24788999999975421 2222222
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCC
Q 007207 383 ATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSIC 457 (613)
Q Consensus 383 ~~~~~~~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~ 457 (613)
+...-+......++ ...--.++..||-....++... +...+.|++.+++..+..+... +.+.+.. .+
T Consensus 85 af~~l~k~~~~~~q---qns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~--ive~l~~---~d 156 (669)
T KOG2326|consen 85 AFIGLIKRLKQYCQ---QNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF--IVEDLTD---ED 156 (669)
T ss_pred hhHHHHHHHHHhcC---CCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH--HHHHHhh---cC
Confidence 22222222222222 1112234566666666544321 2224566666677655444443 3333322 23
Q ss_pred ceEEEEEec
Q 007207 458 PRIYTFGIG 466 (613)
Q Consensus 458 ~~i~tigiG 466 (613)
+.+-++|+.
T Consensus 157 idL~~~gld 165 (669)
T KOG2326|consen 157 IDLLTEGLD 165 (669)
T ss_pred cceeEeecc
Confidence 667777764
No 105
>PRK05434 phosphoglyceromutase; Provisional
Probab=55.68 E-value=69 Score=35.67 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207 408 CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (613)
Q Consensus 408 ~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~ 470 (613)
..+|..+++..++..+..-.+=|+|||.+..-.+-+..+.+.+.+.+-..+.||+|.=|.++.
T Consensus 95 n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~ 157 (507)
T PRK05434 95 NPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTP 157 (507)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCC
Confidence 445555555554444444566677777765433333333333333343346666666665543
No 106
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=52.35 E-value=1.5e+02 Score=25.61 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=59.2
Q ss_pred eEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEE--ECCEEEEEEEeecccccccccccccccCCcccCCeeE
Q 007207 101 TAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAE--ISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFT 178 (613)
Q Consensus 101 ~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~--i~~r~i~g~v~ek~~A~~~~~~~~~~~~~ll~~n~F~ 178 (613)
.+.+++++.. |.+...+.|.+-.=.|=+.++--+..-++. ++|.+-.-+||++..-.--. ...--|-+.++.|+
T Consensus 15 ~~~~~ieme~-n~nY~~sDPF~N~rLFcVs~Die~L~aEv~f~mDGe~~iVEiKd~~~devLW---sn~~~~~V~~dt~t 90 (132)
T PF15417_consen 15 TAKTTIEMEM-NANYSDSDPFENGRLFCVSEDIEALDAEVYFQMDGESGIVEIKDRKTDEVLW---SNTWNGKVSGDTFT 90 (132)
T ss_pred cccEEEEEEe-ccCcCcCCccccceEEEEecchheeeeEEEEEEcCccceEEeccCCccceee---ccccccccccceEE
Confidence 4667777776 444577788876667777777666655544 58877777888765322101 11112334678899
Q ss_pred EecCCCCCCCEEEEEEE
Q 007207 179 LTLPQIDGGSYLSIRLR 195 (613)
Q Consensus 179 ~~V~ni~p~~~v~v~i~ 195 (613)
+++-||..+.+-.|.++
T Consensus 91 isL~nlqk~kEY~V~ft 107 (132)
T PF15417_consen 91 ISLNNLQKEKEYVVCFT 107 (132)
T ss_pred EEhhhcccCceEEEEEe
Confidence 99999998887776655
No 107
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=49.04 E-value=47 Score=36.89 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=44.3
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCccee
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYL 375 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~ 375 (613)
...|.-+.||+|.-. .++.++..|+++..-+..++++.-+++|+|++..++
T Consensus 119 ~~~ppvf~fvvD~~~--D~e~l~~LkdslivslsllppeaLvglItygt~i~v 169 (755)
T COG5047 119 VILPPVFFFVVDACC--DEEELTALKDSLIVSLSLLPPEALVGLITYGTSIQV 169 (755)
T ss_pred ccCCceEEEEEEeec--CHHHHHHHHHHHHHHHhcCCccceeeEEEecceeEE
Confidence 346778999999876 678999999999999999999999999999987654
No 108
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=48.55 E-value=1.2e+02 Score=33.82 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 007207 409 APLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC 469 (613)
Q Consensus 409 ~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~ 469 (613)
.+|..+++...+..+..-.+=|+|||.+..-.+-+..+.+.+.+.+...+.||+|.=|.++
T Consensus 92 ~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~ 152 (501)
T TIGR01307 92 PALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRDT 152 (501)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCCC
Confidence 3444444444333333445556666665433222222223333333334555555555443
No 109
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=47.36 E-value=21 Score=28.94 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHhC-CCCCeEE
Q 007207 325 FKKDVIFIVDISGSMQG-----KPLEDTKNALAVALSKL-DPGDSFN 365 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~L-~~~d~~~ 365 (613)
...++++++|.+++|.. ..++.+...+..++..+ ..++.|+
T Consensus 39 ~~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g~~v~ 85 (86)
T PF01882_consen 39 RSQPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQGDPVG 85 (86)
T ss_pred cCCcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 45789999999999985 56777777777766543 3455554
No 110
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=45.83 E-value=1.6e+02 Score=27.28 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=30.6
Q ss_pred HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEEE
Q 007207 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAI 515 (613)
Q Consensus 474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l 515 (613)
+..+|+.-|..+..+.+.+++.+++.+.+.. ..|.+-++.+
T Consensus 131 ~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~i 171 (172)
T cd02004 131 YDLVAEAFGGKGELVTTPEELKPALKRALAS-GKPALINVII 171 (172)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHHHc-CCCEEEEEEc
Confidence 5678888888889999888888888877653 4566655543
No 111
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]
Probab=42.71 E-value=1.7e+02 Score=32.38 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=61.4
Q ss_pred cccceEEEEEEEEeeeEEEEEEEEEEecccCCCce-eeEEEEeecCCCceEEEEEEE-ECCEEEEEEEeecccccccccc
Q 007207 86 LQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS-CDCRIAVPMGDQGSILGVEAE-ISGKSYHTQLIALGENDGAGKS 163 (613)
Q Consensus 86 L~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~-~e~~y~FPL~~~a~V~~f~~~-i~~r~i~g~v~ek~~A~~~~~~ 163 (613)
+....++=.|+..-.++.|+.+..+.| -++.+ -|-.|.||=+.++.+.-+.+. .+|+.- +.++
T Consensus 31 w~n~nv~RTIDlsS~ivK~tt~l~i~N---~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~-~~l~----------- 95 (602)
T KOG2291|consen 31 WVNVNVERTIDLSSQIVKVTTELSIEN---IGSEPATEYLLAFEKELGASLAFLSVAFTEGKKK-TLLK----------- 95 (602)
T ss_pred cccccceEEEehhhhhhhheeEEEEEe---cCCCchheEEEeccCccccceeEEEEeeccCccc-cccc-----------
Confidence 333334444444446799999999999 55555 589999999999999998543 455322 1111
Q ss_pred cccccCCccc---CCeeEEecCC-CCCCCEEEEEEEEE
Q 007207 164 ASVETGSFLK---PNIFTLTLPQ-IDGGSYLSIRLRWS 197 (613)
Q Consensus 164 ~~~~~~~ll~---~n~F~~~V~n-i~p~~~v~v~i~Y~ 197 (613)
.+..+.-.. ...|++...+ |.||+++++.|.+.
T Consensus 96 -~s~~~~~~~~~~~~~y~v~lp~pl~pge~vTl~V~~~ 132 (602)
T KOG2291|consen 96 -LSVNPPKKDGASERVYTVTLPNPLSPGEKVTLIVEAV 132 (602)
T ss_pred -cccCCcccCCCccceEEEeCCCCCCCCceEEEEEEee
Confidence 111111111 1478888874 88999999988764
No 112
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.17 E-value=1.6e+02 Score=27.90 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=32.9
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcce
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETY 374 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~ 374 (613)
..-++||+|.+.- .|+..+|+-+..++..-. -....++.|++.-.
T Consensus 85 t~~lIfVvDS~Dr---~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD 129 (181)
T KOG0070|consen 85 TQGLIFVVDSSDR---ERIEEAKEELHRMLAEPE-LRNAPLLVFANKQD 129 (181)
T ss_pred CcEEEEEEeCCcH---HHHHHHHHHHHHHHcCcc-cCCceEEEEechhh
Confidence 3569999997754 489999999998885443 34567788887643
No 113
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=36.44 E-value=2.5e+02 Score=31.61 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 007207 408 CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC 469 (613)
Q Consensus 408 ~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~ 469 (613)
..+|..+++.. ..+..-.+=|+|||.+..-.+-+..+.+.+.+.+...+.||+|.=|.+.
T Consensus 114 n~~l~~~~~~~--~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt 173 (558)
T PLN02538 114 GEGFKYIKEAF--ATGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHVLTDGRDV 173 (558)
T ss_pred CHHHHHHHHHh--cCCeeEEEEeccCCCcccHHHHHHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence 34445555443 1333456667788777544333333333344444445667777666554
No 114
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=32.86 E-value=72 Score=29.52 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=37.0
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEE
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVA 368 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~ 368 (613)
++.-+||+|-.|+|.....+..++-+..+|.-..++|.|=|..
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rL 138 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVATPEDEVLVRL 138 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 4667899999999999889999999999998888899876543
No 115
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=31.95 E-value=4.3e+02 Score=24.67 Aligned_cols=42 Identities=7% Similarity=-0.067 Sum_probs=33.7
Q ss_pred HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEEEE
Q 007207 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAID 516 (613)
Q Consensus 474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l~ 516 (613)
+..+|+.-|+.++.+.+.+++...+.+.++. ..|.+-++.++
T Consensus 129 ~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~~~ 170 (177)
T cd02010 129 FVKYAESFGAKGYRIESADDLLPVLERALAA-DGVHVIDCPVD 170 (177)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHhC-CCCEEEEEEec
Confidence 4678888899999999999999999888753 56777676665
No 116
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=30.95 E-value=3e+02 Score=25.59 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEE
Q 007207 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIA 514 (613)
Q Consensus 474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~ 514 (613)
...+|+.-|+.+..+.+.+++...+++.++ ...|.+-+|.
T Consensus 134 ~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~~p~lIev~ 173 (175)
T cd02009 134 FEHLAKAYGLEYRRVSSLDELEQALESALA-QDGPHVIEVK 173 (175)
T ss_pred HHHHHHHcCCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 467888888889999999999999888875 3556665554
No 117
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=30.57 E-value=4.8e+02 Score=24.79 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=34.3
Q ss_pred HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHH--hccceeeeEEEE
Q 007207 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTR--GFSSVLANIAID 516 (613)
Q Consensus 474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~--~~~p~l~~i~l~ 516 (613)
+..+|+.-|..+..+.+.+++..++.+.+.. ...|.+-++.++
T Consensus 135 ~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev~v~ 179 (196)
T cd02013 135 FAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEIVCD 179 (196)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEEEeC
Confidence 5678888888899999999999999988762 356777777765
No 118
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=28.57 E-value=2.9e+02 Score=26.86 Aligned_cols=96 Identities=17% Similarity=0.109 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC--CHHHHHHHHHhcCcE
Q 007207 407 ICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC--NHYFLRMLAMISRGY 484 (613)
Q Consensus 407 l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~--~~~~L~~lA~~~gG~ 484 (613)
+.+.|..|++..- ....+..+.+|-|.++. .+...+. +.....++.|++|++... +...-+.+|+.-|-.
T Consensus 2 ~r~~l~~av~~rl--~~~~~i~~~LSGGlDSs--~i~~~~~----~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~ 73 (255)
T PF00733_consen 2 LRELLEEAVARRL--RSDKPIGILLSGGLDSS--AIAALAA----RQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLE 73 (255)
T ss_dssp HHHHHHHHHHHHC--GCTSEEEEE--SSHHHH--HHHHHHH----HTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHHHH--hcCCCEEEECCCChhHH--HHHHHHH----HhhCCceeEEEEEcCCCcchhHHHHHHHhcccccc
Confidence 4566777776532 23456788888887422 2222222 223344778888887765 667889999888877
Q ss_pred EEEc-CCCcHHHHHHHHHHHHhcccee
Q 007207 485 YGAA-YDLDSIEIQMQKLFTRGFSSVL 510 (613)
Q Consensus 485 ~~~v-~~~~~l~~~l~~~~~~~~~p~l 510 (613)
+..+ .+.+++.+.+...+.....|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~p~~ 100 (255)
T PF00733_consen 74 HHEIELDPEDLLDNLEDIIWRLDGPSP 100 (255)
T ss_dssp EEEEEE-HHHHHHHHHHHHHHHT---H
T ss_pred cceeeechhhHHHhHHHHHHHHhCCcc
Confidence 5443 3445565666666666655543
No 119
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=27.86 E-value=8.3e+02 Score=28.42 Aligned_cols=93 Identities=10% Similarity=0.084 Sum_probs=54.0
Q ss_pred HHHHHHHHHHH---H-HhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC------CCCcchHHHHHH
Q 007207 344 LEDTKNALAVA---L-SKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA------GGSTNICAPLTK 413 (613)
Q Consensus 344 ~~~ak~al~~~---l-~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~------~GgT~l~~aL~~ 413 (613)
|..+.+++..+ + +-++.+..+.++.++..++.+..+.. +..++...++.+...-.+ .+.-.+..||..
T Consensus 46 WTc~vEa~~EYcRIV~DlFP~~k~IrfivsD~~a~~lntW~~--~~Qsl~~L~~~la~vG~P~~~~~~~~d~svi~GL~~ 123 (695)
T PF10221_consen 46 WTCAVEASIEYCRIVWDLFPDGKLIRFIVSDTAAHILNTWST--SQQSLSHLMNALATVGPPPRSDPENSDYSVIHGLRM 123 (695)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEccccccccCcCh--hhccHHHHHHHHHhcCCCCCCCcccccchhHHHHHH
Confidence 45555655543 2 33456777999999998877655322 445555555544311122 122257899999
Q ss_pred HHHHHhcCC------------------CCccEEEEEecCCcCc
Q 007207 414 AVEMLTNSR------------------GSIPIIFLVTDGAVED 438 (613)
Q Consensus 414 A~~~l~~~~------------------~~~~~IillTDG~~~~ 438 (613)
|++.|.... .....||++|.-..+.
T Consensus 124 AIEaL~e~td~Q~e~~~~~~~~~~~~~~N~GrIIciT~~k~d~ 166 (695)
T PF10221_consen 124 AIEALAEPTDSQKEQRASRVNEELKKVENRGRIICITSAKSDE 166 (695)
T ss_pred HHHHHhcCCHHHHHHhhcccchhhhhccCCccEEEEEeecCcH
Confidence 999764210 1234788889776543
No 120
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=27.62 E-value=68 Score=27.15 Aligned_cols=38 Identities=16% Similarity=0.523 Sum_probs=29.9
Q ss_pred cccCCeeEEecCCCCCCCEEEEEEEEEEEeeccCCeEEEEeeecC
Q 007207 171 FLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKF 215 (613)
Q Consensus 171 ll~~n~F~~~V~ni~p~~~v~v~i~Y~q~L~~~~g~~~~~lp~~~ 215 (613)
.++|++|++++-+|.-++++.|.+. ++|+|.+.+|..+
T Consensus 66 I~~pG~YeiNl~~Lld~~~iVval~-------EeG~Y~I~LP~~~ 103 (112)
T COG3364 66 ILRPGVYEINLESLLDRDEIVVALQ-------EEGRYFIHLPSLL 103 (112)
T ss_pred EecCceEEEehhhhccCCceEEEEc-------cCCeEEEEChhHh
Confidence 4589999999999998888777652 4799987776653
No 121
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.04 E-value=88 Score=36.11 Aligned_cols=13 Identities=8% Similarity=-0.115 Sum_probs=6.9
Q ss_pred eEEEEEEEECCEE
Q 007207 134 SILGVEAEISGKS 146 (613)
Q Consensus 134 ~V~~f~~~i~~r~ 146 (613)
+=..|++.+++..
T Consensus 640 s~~cFWvkv~Edk 652 (1102)
T KOG1924|consen 640 SENCFWVKVNEDK 652 (1102)
T ss_pred Cccceeeecchhh
Confidence 3345666666533
No 122
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=27.01 E-value=5.6e+02 Score=24.41 Aligned_cols=44 Identities=5% Similarity=-0.134 Sum_probs=35.3
Q ss_pred HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHH---hccceeeeEEEEe
Q 007207 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTR---GFSSVLANIAIDT 517 (613)
Q Consensus 474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~---~~~p~l~~i~l~~ 517 (613)
+..||+.-|..+..+.+.+++..++.+.+.. ...|.+-+|.++-
T Consensus 149 ~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 149 HVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 4568888888999999999999999988862 4578888887753
No 123
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=25.84 E-value=3.9e+02 Score=24.43 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=32.7
Q ss_pred HHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEEE
Q 007207 473 FLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAI 515 (613)
Q Consensus 473 ~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l 515 (613)
-+..+|+.-|..++.+.+.+++.+.+.+.+. ...|.+-++.+
T Consensus 113 d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v~i 154 (157)
T cd02001 113 NLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHAPI 154 (157)
T ss_pred CHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 3778888888889999999999988888875 34566666554
No 124
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.57 E-value=1.1e+02 Score=27.73 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=24.8
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSK 357 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~ 357 (613)
..-++||+|.+.| ++++.|++-+..++..
T Consensus 85 tqglIFV~Dsa~~---dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 85 TQGLIFVVDSADR---DRIEEARNELHRIIND 113 (180)
T ss_pred CceEEEEEeccch---hhHHHHHHHHHHHhCC
Confidence 3679999998887 6899999999999854
No 125
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=25.52 E-value=1e+02 Score=24.47 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=16.8
Q ss_pred CCCCCCEEEEEEEEEEEeeccCCeEEEEee
Q 007207 183 QIDGGSYLSIRLRWSQKLSYRDGEFSVNVP 212 (613)
Q Consensus 183 ni~p~~~v~v~i~Y~q~L~~~~g~~~~~lp 212 (613)
.|+||+++.+.++-.-+-....|.|.+.+.
T Consensus 45 ~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp -B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred cCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence 678888887777765554555677665443
No 126
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=24.73 E-value=5.4e+02 Score=24.13 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=59.8
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEE---ec-------C----
Q 007207 402 GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFG---IG-------S---- 467 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tig---iG-------~---- 467 (613)
.+...|+-++-.|+-.--..+ ..+.+.++-||...-...-+....+. ...+.+..+- .| .
T Consensus 47 ~~~g~mG~~l~~aiGaala~~-~~~vv~i~GDG~f~~~~~el~ta~~~-----~~p~~ivV~nN~~~~~~~~~~~~~~~~ 120 (183)
T cd02005 47 PLWGSIGYSVPAALGAALAAP-DRRVILLVGDGSFQMTVQELSTMIRY-----GLNPIIFLINNDGYTIERAIHGPEASY 120 (183)
T ss_pred cchhhHhhhHHHHHHHHHhCC-CCeEEEEECCchhhccHHHHHHHHHh-----CCCCEEEEEECCCcEEEEEeccCCcCc
Confidence 344556666665554322222 25688888999874322112222211 1223333331 11 0
Q ss_pred -CCCHHHHHHHHHhcC----cEEEEcCCCcHHHHHHHHHHHHhccceeeeEEEE
Q 007207 468 -YCNHYFLRMLAMISR----GYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAID 516 (613)
Q Consensus 468 -~~~~~~L~~lA~~~g----G~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l~ 516 (613)
+....-+..+|+.-| +.+..+.+.+++.+++.+.++....|.+-++.++
T Consensus 121 ~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~~~ 174 (183)
T cd02005 121 NDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVILP 174 (183)
T ss_pred ccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 000122567787766 5788899999999999988873356777666654
No 127
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=24.01 E-value=6.4e+02 Score=24.10 Aligned_cols=42 Identities=10% Similarity=0.020 Sum_probs=33.5
Q ss_pred HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEEEE
Q 007207 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAID 516 (613)
Q Consensus 474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l~ 516 (613)
+..+|+.-|..+..+.+.+++.+++++.++ ...|.+-++.++
T Consensus 143 ~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV~v~ 184 (205)
T cd02003 143 FAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVIKTD 184 (205)
T ss_pred HHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEEee
Confidence 566888888889999999999999988764 356777777765
No 128
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=23.37 E-value=3.9e+02 Score=24.72 Aligned_cols=28 Identities=32% Similarity=0.550 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh
Q 007207 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSK 357 (613)
Q Consensus 327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~ 357 (613)
.-++||+|.|.. .++..+++.+..++..
T Consensus 83 ~~iIfVvDssd~---~~l~e~~~~L~~ll~~ 110 (175)
T PF00025_consen 83 DGIIFVVDSSDP---ERLQEAKEELKELLND 110 (175)
T ss_dssp SEEEEEEETTGG---GGHHHHHHHHHHHHTS
T ss_pred ceeEEEEecccc---eeecccccchhhhcch
Confidence 569999998854 3799999999998864
No 129
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=23.01 E-value=3.1e+02 Score=20.10 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=30.8
Q ss_pred EEEEEEEEEecccCCCcee-eEEEEeecCCCceEEEEEEEECC
Q 007207 103 FVRVSGTWRVHCVMGSKSC-DCRIAVPMGDQGSILGVEAEISG 144 (613)
Q Consensus 103 ~v~v~~~f~n~~~~~~~~~-e~~y~FPL~~~a~V~~f~~~i~~ 144 (613)
.++.+.++.| .+..+. +..+.=+||++-....-.+.+||
T Consensus 13 ~v~Yti~v~N---~g~~~a~~v~v~D~lP~g~~~v~~S~~~~g 52 (53)
T TIGR01451 13 TITYTITVTN---NGNVPATNVVVTDILPSGTTFVSNSVTVNG 52 (53)
T ss_pred EEEEEEEEEE---CCCCceEeEEEEEcCCCCCEEEeCcEEECC
Confidence 4667788888 666665 58899999999888888888776
No 130
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=22.02 E-value=2.4e+02 Score=28.90 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=51.5
Q ss_pred EEEEEEEEEecccCCCce-----eeEEEEeecCCCceEEEEEEEECCEEEEEEEeeccccccccc--cc---ccccCCcc
Q 007207 103 FVRVSGTWRVHCVMGSKS-----CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGK--SA---SVETGSFL 172 (613)
Q Consensus 103 ~v~v~~~f~n~~~~~~~~-----~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~~A~~~~~--~~---~~~~~~ll 172 (613)
.+.+-..|.| .++.+ ++|.|.+|.+.+..|-+|++. .+...|.+.++|.-.|. .. .+++-+|.
T Consensus 100 ~~~~LvgftN---~g~~~~~V~~i~aSl~~p~d~~~~iqNfTa~----~y~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~ 172 (285)
T PF03896_consen 100 PVKFLVGFTN---KGSEPFTVESIEASLRYPQDYSYYIQNFTAV----RYNREVPPGEEATFPYSFTPSEELAPRPFGLV 172 (285)
T ss_pred eEEEEEEEEe---CCCCCEEEEEEeeeecCccccceEEEeeccc----ccCcccCCCCeEEEEEEEecchhcCCcceEEE
Confidence 3556667788 34443 689999999999999999984 35567788888884443 21 23333332
Q ss_pred --------cCCeeEEecCCCCCCCEEEE
Q 007207 173 --------KPNIFTLTLPQIDGGSYLSI 192 (613)
Q Consensus 173 --------~~n~F~~~V~ni~p~~~v~v 192 (613)
.++.|+..++| ++|.|
T Consensus 173 i~l~y~d~~g~~y~~~~fN----~TV~I 196 (285)
T PF03896_consen 173 INLIYEDSDGNQYQVTVFN----GTVTI 196 (285)
T ss_pred EEEEEEeCCCCEEEEEEec----ceEEE
Confidence 35677777764 55444
No 131
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=21.05 E-value=6.5e+02 Score=28.71 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC-----CCHHHHHHHHHhcC
Q 007207 408 CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-----CNHYFLRMLAMISR 482 (613)
Q Consensus 408 ~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~-----~~~~~L~~lA~~~g 482 (613)
...|..|++.-- ....+..+++|-|.++.. +...+.+ .+...++.||+|+... .+..+-+.+|+.-|
T Consensus 246 ~~~L~~AV~~rl--~sd~pvg~~LSGGlDSs~--Iaa~~~~----~~~~~l~tftigf~~~~~~~~dE~~~A~~vA~~~g 317 (589)
T TIGR03104 246 LEALRLAVKRRL--VADVPVGVLLSGGLDSSL--IVGLLAE----AGVDGLRTFSIGFEDVGGEKGDEFEYSDIIAERFH 317 (589)
T ss_pred HHHHHHHHHHHh--hcCCceeEEecCCccHHH--HHHHHHH----hcCCCceEEEEEecCCCCCCCChHHHHHHHHHHhC
Confidence 344555555322 224678899999986332 2222221 1223467888888532 24467888898877
Q ss_pred cEEEE-cCCCcHHHHHHHHHHHHhccce
Q 007207 483 GYYGA-AYDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 483 G~~~~-v~~~~~l~~~l~~~~~~~~~p~ 509 (613)
..+.. ..+.+++.+.+.+++.....|.
T Consensus 318 ~~h~~i~~~~~~~~~~l~~~v~~~~~P~ 345 (589)
T TIGR03104 318 TRHHKIRIPNHRVLPALPEAVAAMSEPM 345 (589)
T ss_pred CcCeEEEcCHHHHHHHHHHHHHHhCCCC
Confidence 66533 3355667677777776665554
No 132
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=20.65 E-value=66 Score=22.78 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=12.4
Q ss_pred CCCCCCEEEEEEEE
Q 007207 183 QIDGGSYLSIRLRW 196 (613)
Q Consensus 183 ni~p~~~v~v~i~Y 196 (613)
.|+||++..|+++|
T Consensus 32 ~i~PGes~~i~v~y 45 (45)
T PF07610_consen 32 PIAPGESGKIKVTY 45 (45)
T ss_pred eECCCCEEEEEEEC
Confidence 58999999999987
Done!