Query 007207
Match_columns 613
No_of_seqs 534 out of 2182
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 19:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 99.9 1.5E-23 5E-28 227.4 23.7 190 324-518 75-270 (464)
2 1ijb_A VON willebrand factor; 99.9 2.4E-21 8.2E-26 187.6 21.0 176 325-507 12-197 (202)
3 3ibs_A Conserved hypothetical 99.9 1.8E-21 6.1E-26 190.4 19.4 177 323-507 8-214 (218)
4 1q0p_A Complement factor B; VO 99.9 1.6E-21 5.3E-26 191.3 15.1 182 324-505 13-219 (223)
5 4hqo_A Sporozoite surface prot 99.8 1.4E-20 4.9E-25 190.1 18.3 182 325-510 17-211 (266)
6 3zqk_A VON willebrand factor; 99.8 1.8E-20 6.3E-25 180.9 16.4 169 323-507 18-195 (199)
7 1shu_X Anthrax toxin receptor 99.8 4E-20 1.4E-24 175.3 18.4 174 325-506 5-182 (182)
8 4hqf_A Thrombospondin-related 99.8 3.6E-20 1.2E-24 188.7 19.1 181 325-509 20-213 (281)
9 1mf7_A Integrin alpha M; cell 99.8 4.5E-21 1.5E-25 184.2 9.3 175 325-507 4-191 (194)
10 2b2x_A Integrin alpha-1; compu 99.8 5.7E-20 2E-24 180.6 16.9 174 325-508 21-214 (223)
11 3n2n_F Anthrax toxin receptor 99.8 4.6E-20 1.6E-24 175.4 15.5 174 324-506 5-185 (185)
12 1atz_A VON willebrand factor; 99.8 1.2E-19 4E-24 173.6 17.7 173 325-506 4-188 (189)
13 1n3y_A Integrin alpha-X; alpha 99.8 5.1E-21 1.7E-25 184.2 7.7 177 324-507 7-195 (198)
14 1pt6_A Integrin alpha-1; cell 99.8 1.1E-19 3.7E-24 177.3 16.9 175 325-509 6-200 (213)
15 1v7p_C Integrin alpha-2; snake 99.8 3.2E-19 1.1E-23 172.1 19.6 173 325-507 5-197 (200)
16 1mjn_A Integrin alpha-L; rossm 99.8 3.1E-20 1.1E-24 176.2 6.0 166 326-504 2-178 (179)
17 2xgg_A Microneme protein 2; A/ 99.8 3.4E-18 1.2E-22 161.8 15.9 145 325-476 16-170 (178)
18 2x31_A Magnesium-chelatase 60 99.8 7.1E-21 2.4E-25 182.0 -3.1 174 323-505 2-186 (189)
19 2odp_A Complement C2; C3/C5 co 99.8 1.8E-18 6.2E-23 190.9 13.8 181 323-503 6-211 (509)
20 1rrk_A Complement factor B; BB 99.8 3.8E-18 1.3E-22 187.7 15.7 181 326-506 1-206 (497)
21 3hrz_D Complement factor B; se 99.8 3.2E-18 1.1E-22 197.5 14.1 190 323-512 240-454 (741)
22 3k6s_A Integrin alpha-X; cell 99.7 2.9E-17 9.9E-22 194.7 4.6 179 323-508 127-317 (1095)
23 2x5n_A SPRPN10, 26S proteasome 99.6 2.2E-14 7.4E-19 137.0 18.2 155 327-492 3-174 (192)
24 4b4t_W RPN10, 26S proteasome r 99.6 1.8E-14 6E-19 143.4 16.2 146 328-483 5-163 (268)
25 2ww8_A RRGA, cell WALL surface 99.5 1.2E-13 4.1E-18 159.4 15.0 115 323-437 221-391 (893)
26 1yvr_A RO autoantigen, 60-kDa 99.3 6E-12 2E-16 139.3 11.5 135 323-468 365-504 (538)
27 1jey_B KU80; double-strand DNA 99.3 2E-11 6.9E-16 135.7 12.9 156 327-490 8-229 (565)
28 2nvo_A RO sixty-related protei 99.0 3E-10 1E-14 125.2 8.7 151 324-485 360-534 (535)
29 3rag_A Uncharacterized protein 98.9 1.2E-09 4E-14 106.1 6.1 89 324-420 132-227 (242)
30 1jey_A KU70; double-strand DNA 98.9 8.6E-09 2.9E-13 115.3 14.0 139 326-468 34-208 (609)
31 1pcx_A Protein transport prote 98.4 0.00011 3.6E-09 84.6 28.7 234 313-551 174-489 (810)
32 2nut_A Protein transport prote 98.3 0.00011 3.6E-09 84.1 26.3 175 324-503 130-395 (769)
33 3rag_A Uncharacterized protein 98.3 2.1E-06 7.3E-11 83.2 9.3 78 423-505 8-90 (242)
34 1m2v_B SEC24, protein transpor 98.2 0.0003 1E-08 81.5 26.1 175 313-492 290-530 (926)
35 2iue_A Pactolus I-domain; memb 98.2 1.1E-05 3.9E-10 77.0 11.8 105 325-437 2-117 (212)
36 3eh1_A Protein transport prote 98.2 0.00058 2E-08 77.7 27.6 175 313-492 147-378 (751)
37 3fcs_B Integrin beta-3; beta p 98.0 5.7E-05 1.9E-09 84.8 15.9 185 308-509 98-355 (690)
38 1m2o_A SEC23, protein transpor 97.8 0.0028 9.6E-08 72.5 24.0 166 323-492 118-376 (768)
39 3t3p_B Integrin beta-3; integr 97.8 0.0012 4.1E-08 70.0 19.1 185 308-509 98-355 (472)
40 3vi3_B Integrin beta-1; beta p 97.5 0.0035 1.2E-07 66.0 18.7 184 308-509 109-362 (454)
41 3k6s_B Integrin beta-2; cell r 97.5 0.00024 8.1E-09 79.6 10.4 184 308-509 91-345 (687)
42 3v4v_B Integrin beta-7; cell a 97.5 0.0036 1.2E-07 66.7 17.7 184 308-509 119-374 (503)
43 3efo_B SEC24 related gene fami 97.4 0.0076 2.6E-07 68.8 20.5 226 322-550 173-475 (770)
44 3eh2_A Protein transport prote 97.4 0.0091 3.1E-07 68.1 20.7 226 322-550 169-471 (766)
45 4g2a_A Hypothetical protein; t 96.9 0.043 1.5E-06 54.9 17.4 111 80-203 10-150 (322)
46 1o98_A 2,3-bisphosphoglycerate 35.8 1.2E+02 0.0039 32.5 9.1 68 403-470 89-156 (511)
47 3isy_A Bsupi, intracellular pr 34.2 1.3E+02 0.0043 25.4 7.3 29 183-213 73-101 (120)
48 3igz_B Cofactor-independent ph 30.5 1.1E+02 0.0036 33.1 7.7 71 407-477 106-180 (561)
49 1srv_A Protein (groel (HSP60 c 21.7 1E+02 0.0036 26.8 4.6 23 464-487 89-111 (145)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.91 E-value=1.5e-23 Score=227.44 Aligned_cols=190 Identities=22% Similarity=0.200 Sum_probs=164.6
Q ss_pred CCCceEEEEEeCCCCCC--CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccc---cccCHHHHHHHHHHHhhc
Q 007207 324 VFKKDVIFIVDISGSMQ--GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM---ELATKEAVERAHQWIGIN 398 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~--g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~---~~~~~~~~~~a~~~i~~~ 398 (613)
..+.+++||||+||||. +.+++.+|+++..+++.|.++++|+|+.|++.+..+.+.+ ...+..+...+.++|+ .
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~-~ 153 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVG-R 153 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHH-T
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHH-c
Confidence 46799999999999999 8999999999999999999999999999999999887763 3457788888888887 7
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l 477 (613)
+.++|||+++.||..|++.+...++..+.|||||||.+++.. .......+.. ..+++||+||+|.+.|..+|+.|
T Consensus 154 L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~----~~~i~i~tiGiG~~~d~~~L~~I 229 (464)
T 4fx5_A 154 LHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSS----IGNFTADCRGIGEDWEPKELRKI 229 (464)
T ss_dssp CCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHH----TTTCEEEEEEESSSSCHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCccCHHHHHHH
Confidence 889999999999999999998766667899999999987432 2222222221 23489999999999999999999
Q ss_pred HHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEEEEec
Q 007207 478 AMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTL 518 (613)
Q Consensus 478 A~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l~~~ 518 (613)
|+.++|.|+++.+.+++...|.+++..+.++.++|+++.+.
T Consensus 230 A~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~ 270 (464)
T 4fx5_A 230 ADALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLW 270 (464)
T ss_dssp HHHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred HHhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEE
Confidence 99999999999999999999999999999999999988764
No 2
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.88 E-value=2.4e-21 Score=187.55 Aligned_cols=176 Identities=14% Similarity=0.155 Sum_probs=140.6
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
.+.+++||||.||||.+.+++.+|+++..+++.|. .++||+|+.|++.++...++....+.+.+.++++.+. ..
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~---~~ 88 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVK---YA 88 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCC---CC
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHHHHHHHHhCc---CC
Confidence 47999999999999998899999999999999987 5789999999999988888765557777777766443 23
Q ss_pred CC-CcchHHHHHHHHHHH-hc--CCCCccEEEEEecCCcCch--hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207 402 GG-STNICAPLTKAVEML-TN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (613)
Q Consensus 402 ~G-gT~l~~aL~~A~~~l-~~--~~~~~~~IillTDG~~~~~--~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~ 475 (613)
+| +|+++.||+.|.+.+ .. +++..+.|||+|||.+++. ..+...++. +++ .+++||+||+|.+.|...|+
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~-l~~---~gi~i~~igvG~~~~~~~L~ 164 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQG-LKK---KKVIVIPVGIGPHANLKQIR 164 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHH-HHH---TTEEEEEEEESTTSCHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHH-HHH---CCCEEEEEecCCcCCHHHHH
Confidence 44 499999999998654 32 2345679999999998653 233333333 332 34899999999989999999
Q ss_pred HHHHhc-CcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207 476 MLAMIS-RGYYGAAYDLDSIEIQMQKLFTRGFS 507 (613)
Q Consensus 476 ~lA~~~-gG~~~~v~~~~~l~~~l~~~~~~~~~ 507 (613)
.||..+ +|.++.+.+.++|...+.++.+.+|.
T Consensus 165 ~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~ 197 (202)
T 1ijb_A 165 LIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD 197 (202)
T ss_dssp HHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCCcccEEEeCCHHHHHHHHHHHHHHhhc
Confidence 999864 68888999999999999999988875
No 3
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.8e-21 Score=190.38 Aligned_cols=177 Identities=20% Similarity=0.250 Sum_probs=142.4
Q ss_pred CCCCceEEEEEeCCCCCCCC-----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhh
Q 007207 323 KVFKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI 397 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~-----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 397 (613)
+..+.+++||||+||||.+. +++.+|+++..++..++ +++|+|+.|++.+..+.+.+. +...+..+++.+..
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~~--~~~~~~~~l~~l~~ 84 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPITS--DYISAKMFLESISP 84 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEES--CHHHHHHHHHTCCG
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCCC--CHHHHHHHHHhcCc
Confidence 55789999999999999975 89999999999999986 899999999999988887654 67777777776654
Q ss_pred cCCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecC----------
Q 007207 398 NFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS---------- 467 (613)
Q Consensus 398 ~~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~---------- 467 (613)
.....|+|++..||..|.+.+...+...+.|||+|||.++.. .....+ +.+++ .+++||+||+|.
T Consensus 85 ~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-~~~~~~-~~~~~---~~i~v~~igig~~~~~~~~~~g 159 (218)
T 3ibs_A 85 SLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAA-KAAAE---KGIQVSVLGVGMPEGAPIPVEG 159 (218)
T ss_dssp GGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-CHHHHH-HHHHT---TTEEEEEEEESCTTCEECBCTT
T ss_pred ccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-cHHHHH-HHHHh---cCCEEEEEEecCCCCCcccccC
Confidence 445689999999999999998766566789999999998765 223322 23332 358999999997
Q ss_pred ---------------CCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207 468 ---------------YCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFS 507 (613)
Q Consensus 468 ---------------~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~ 507 (613)
..|...|+.||+.+||.|+++.+..+....+.+.++++..
T Consensus 160 ~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l~~ 214 (218)
T 3ibs_A 160 TNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMAK 214 (218)
T ss_dssp SSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHHH
T ss_pred CCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHhhc
Confidence 5789999999999999999999866666666666665543
No 4
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.86 E-value=1.6e-21 Score=191.31 Aligned_cols=182 Identities=18% Similarity=0.234 Sum_probs=129.4
Q ss_pred CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhc
Q 007207 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN 398 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~ 398 (613)
..+.+++||||+||||.+.+++.+|+++..+++.+ +++++|+|+.|++.+....++..+. +.+.+..+++.+...
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 92 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYE 92 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTT
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhcccc
Confidence 45799999999999999989999999999998665 4578999999999998877554332 446666666655311
Q ss_pred C-CCCCCcchHHHHHHHHHHHhcCC--------CCccEEEEEecCCcC---chhHHHHHHHHHH------HcCCCCCceE
Q 007207 399 F-IAGGSTNICAPLTKAVEMLTNSR--------GSIPIIFLVTDGAVE---DERQICDAMKSRL------TNGGSICPRI 460 (613)
Q Consensus 399 ~-~~~GgT~l~~aL~~A~~~l~~~~--------~~~~~IillTDG~~~---~~~~~~~~~~~~~------~~~~~~~~~i 460 (613)
. ..+|+|+++.||..|.+.+.... ...+.|||+|||.++ +.....+.+++.. ......+++|
T Consensus 93 ~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 172 (223)
T 1q0p_A 93 DHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDV 172 (223)
T ss_dssp SCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEE
T ss_pred cccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEE
Confidence 0 25799999999999999987432 346789999999987 3444445554432 2333456899
Q ss_pred EEEEecCCCCHHHHHHHHHhcCc--EEEEcCCCcHHHHHHHHHHHHh
Q 007207 461 YTFGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQMQKLFTRG 505 (613)
Q Consensus 461 ~tigiG~~~~~~~L~~lA~~~gG--~~~~v~~~~~l~~~l~~~~~~~ 505 (613)
|+||+|.+.+...|+.||..++| .|+.+.+.++|...+.+++++.
T Consensus 173 ~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~s 219 (223)
T 1q0p_A 173 YVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES 219 (223)
T ss_dssp EEEECSSCCCHHHHHHHSCCCTTCCCEEETTC---------------
T ss_pred EEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhccc
Confidence 99999998999999999999999 8999999999988888777654
No 5
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.85 E-value=1.4e-20 Score=190.07 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=144.8
Q ss_pred CCceEEEEEeCCCCCCCCcH-HHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhc
Q 007207 325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN 398 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~-~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~ 398 (613)
.+.|++||||.||||.+..+ +.+|+++..+++.|. ++++|+|+.|++.+..+.++.... +...+..+++.+...
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~ 96 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKT 96 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHHHH
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhhhc
Confidence 56899999999999998888 589999999999997 689999999999999888765431 345555666555322
Q ss_pred CCCCCCcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~ 475 (613)
..++|+|+++.||..|.+++... ++..+.|||||||.+++.......++... + .+++||+||+|.+.+..+|+
T Consensus 97 ~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~-~---~gi~i~~iGiG~~~~~~~L~ 172 (266)
T 4hqo_A 97 YTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLK-Q---RNVRLAVIGIGQGINHQFNR 172 (266)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHH-H---TTCEEEEEECSSSCCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHH-H---CCCEEEEEecCcccCHHHHH
Confidence 36789999999999999888754 34567999999999987655555544443 2 24899999999999999999
Q ss_pred HHHHhc--C--cEEEEcCCCcHHHHHHHHHHHHhcccee
Q 007207 476 MLAMIS--R--GYYGAAYDLDSIEIQMQKLFTRGFSSVL 510 (613)
Q Consensus 476 ~lA~~~--g--G~~~~v~~~~~l~~~l~~~~~~~~~p~l 510 (613)
.||..+ + +.++++.+.++|.+.+.+++++++....
T Consensus 173 ~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC~~~~ 211 (266)
T 4hqo_A 173 LIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEVE 211 (266)
T ss_dssp HHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCEEEEE
T ss_pred HhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhccccc
Confidence 999874 2 3778888888898888888877776543
No 6
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.84 E-value=1.8e-20 Score=180.86 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=137.2
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF 399 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 399 (613)
...+.|++||||.||||.+.+++.+|+++..+++.| ++++||+|+.|+++++...++....+.+.+.++++.+.
T Consensus 18 ~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~--- 94 (199)
T 3zqk_A 18 NSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIR--- 94 (199)
T ss_dssp -CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHHHHHHHHHCC---
T ss_pred CCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHHHHHHHHhCc---
Confidence 457899999999999999989999999999999999 47899999999999999888876667777777776553
Q ss_pred CCCC-CcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHH
Q 007207 400 IAGG-STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYF 473 (613)
Q Consensus 400 ~~~G-gT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~ 473 (613)
..+| +|+++.||..|.+.+.. +++..+.|||+|||...+... . ...+++||+||+|.+.|...
T Consensus 95 ~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----------~-~~~~v~v~~iGiG~~~~~~~ 163 (199)
T 3zqk_A 95 YQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----------R-LPGDIQVVPIGVGPNANVQE 163 (199)
T ss_dssp CCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC----------C-CCTTEEEEEEEESTTCCHHH
T ss_pred CCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH----------H-HhCCCEEEEEEcCCCCCHHH
Confidence 2344 59999999999985421 234457999999999765421 1 12458999999999899999
Q ss_pred HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207 474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFS 507 (613)
Q Consensus 474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~ 507 (613)
|+.||. ++ .++++.+.++|...+.+++.++|.
T Consensus 164 L~~iA~-~~-~~~~~~~~~~L~~~~~~l~~~~c~ 195 (199)
T 3zqk_A 164 LERIGW-PN-APILIQDFETLPREAPDLVLQRCC 195 (199)
T ss_dssp HHHHHT-TS-CCEEESCTTTHHHHHHHHHHHHHH
T ss_pred HHHHhC-CC-ceEEeCCHHHHHHHHHHHHHhhcc
Confidence 999998 44 445889999999999999988874
No 7
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.84 E-value=4e-20 Score=175.34 Aligned_cols=174 Identities=14% Similarity=0.204 Sum_probs=134.8
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh-CCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG 403 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G 403 (613)
.+.+++||||.||||.+..+. .++.++.++.. +.++++|+|+.|++.+....+++ .+...+..+++.+. ...++|
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~-~~~~~g 80 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT--GDRGKISKGLEDLK-RVSPVG 80 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHH-TCCCCS
T ss_pred CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC--CCHHHHHHHHHhcc-cCCCCC
Confidence 578999999999999975443 34444444444 45799999999999998887765 37888888888886 567889
Q ss_pred CcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchhH-HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207 404 STNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDERQ-ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480 (613)
Q Consensus 404 gT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~~-~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~ 480 (613)
+|++..||..|.+.+... ++..+.|||+|||.+++... ......+.+++ .++++|+||+| +.+...|+.||..
T Consensus 81 ~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~---~~i~i~~igvg-~~~~~~L~~ia~~ 156 (182)
T 1shu_X 81 ETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRS---LGASVYCVGVL-DFEQAQLERIADS 156 (182)
T ss_dssp CCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHH---TTCEEEEEECS-SCCHHHHHHHSSS
T ss_pred CchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHh---CCCEEEEEeCC-cCCHHHHHHHhCC
Confidence 999999999999998654 34568999999999875432 12223333333 34899999999 4689999999999
Q ss_pred cCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207 481 SRGYYGAAYDLDSIEIQMQKLFTRGF 506 (613)
Q Consensus 481 ~gG~~~~v~~~~~l~~~l~~~~~~~~ 506 (613)
++|.|+...+.++|...+.++.+++|
T Consensus 157 ~~~~~~~~~~~~~L~~~~~~i~~~iC 182 (182)
T 1shu_X 157 KEQVFPVKGGFQALKGIINSILAQSC 182 (182)
T ss_dssp GGGEEESSSTTHHHHHHHHHHHHTBC
T ss_pred CCceEEccCCHHHHHHHHHHHHhccC
Confidence 98888776688999998888877664
No 8
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.84 E-value=3.6e-20 Score=188.65 Aligned_cols=181 Identities=16% Similarity=0.146 Sum_probs=147.9
Q ss_pred CCceEEEEEeCCCCCCCCcH-HHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhc
Q 007207 325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN 398 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~-~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~ 398 (613)
.+.||+||||.||||.+..+ +.+|+++..+++.|.. +++|+|+.|++++....++.... +.+.+.++++.+...
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~ 99 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLST 99 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHT
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhc
Confidence 58999999999999998777 8999999999999876 78999999999998877765532 467777788777533
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCC---CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNSR---GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~~---~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~ 475 (613)
...+|+|+++.||..|.+.+.... +..+.|||||||.+++.......++... + .+++||+||+|.+.+..+|+
T Consensus 100 ~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~-~---~gv~i~~igiG~~~~~~~L~ 175 (281)
T 4hqf_A 100 NLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLS-D---RGVKIAVFGIGQGINVAFNR 175 (281)
T ss_dssp TGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHH-H---TTCEEEEEEESSSCCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHH-H---CCCEEEEEeCCCccCHHHHH
Confidence 456899999999999998886532 3567999999999987655555544443 2 34899999999999999999
Q ss_pred HHHHhc--Cc--EEEEcCCCcHHHHHHHHHHHHhccce
Q 007207 476 MLAMIS--RG--YYGAAYDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 476 ~lA~~~--gG--~~~~v~~~~~l~~~l~~~~~~~~~p~ 509 (613)
.||... +| .++.+.+.+++...+..+..+++..+
T Consensus 176 ~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~v 213 (281)
T 4hqf_A 176 FLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVEV 213 (281)
T ss_dssp HHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCCCCCceEEecchhhhhcccCCcccccCCCc
Confidence 999873 44 78889999999999999988888763
No 9
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.83 E-value=4.5e-21 Score=184.22 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=135.1
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCC-CC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFI-AG 402 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~-~~ 402 (613)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++.+....++....+... ..+.++ .+. .+
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~~~~~~~---~~~~i~-~l~~~~ 79 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPN---PRSLVK-PITQLL 79 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHHHHSCC---HHHHHT-TCCCCC
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCCcCCHHH---HHHHHH-hCcCCC
Confidence 56899999999999998899999999999999986 5789999999999988777644222223 344444 344 58
Q ss_pred CCcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----HH
Q 007207 403 GSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HY 472 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----~~ 472 (613)
|+|+++.||..|.+.+.. +++..+.|||+|||.++ +.....+.++ .+++ .++++|+||+|...+ ..
T Consensus 80 g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~-~~~~---~gi~v~~igvG~~~~~~~~~~ 155 (194)
T 1mf7_A 80 GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIP-EADR---EGVIRYVIGVGDAFRSEKSRQ 155 (194)
T ss_dssp SCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHH-HHHH---TTEEEEEEEESGGGCSHHHHH
T ss_pred CCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHH-HHHH---CCCEEEEEEecccccccccHH
Confidence 999999999999975532 23346799999999987 4432222222 2222 248999999998875 78
Q ss_pred HHHHHHHhc-CcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207 473 FLRMLAMIS-RGYYGAAYDLDSIEIQMQKLFTRGFS 507 (613)
Q Consensus 473 ~L~~lA~~~-gG~~~~v~~~~~l~~~l~~~~~~~~~ 507 (613)
.|+.||..+ +|.++.+.+.++|...+.++.++++.
T Consensus 156 ~L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic~ 191 (194)
T 1mf7_A 156 ELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194)
T ss_dssp HHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred HHHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHhh
Confidence 999999985 58899999999999999999888875
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.83 E-value=5.7e-20 Score=180.61 Aligned_cols=174 Identities=18% Similarity=0.195 Sum_probs=135.2
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
.+.+++||||.||||. .++.+|+++..+++.|. ++++|+|+.|++++....++....+...+.+ .|+ .+..
T Consensus 21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~~~~~~---~i~-~l~~ 94 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLV---AAN-KIVQ 94 (223)
T ss_dssp -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHHHHH---HHT-TCCC
T ss_pred CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCHHHHHH---HHH-hhhc
Confidence 4799999999999998 59999999999999885 6899999999999988887754444454444 444 3443
Q ss_pred -CC-CcchHHHHHHHHHHH-h----cCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----
Q 007207 402 -GG-STNICAPLTKAVEML-T----NSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN---- 470 (613)
Q Consensus 402 -~G-gT~l~~aL~~A~~~l-~----~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~---- 470 (613)
+| +|++..||..|.+.+ . .+++..+.|||+|||..++.......+. .+++ .+++||+||+|...+
T Consensus 95 ~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~-~~~~---~gi~v~~igvG~~~~~~~~ 170 (223)
T 2b2x_A 95 RGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQ-DCED---ENIQRFSIAILGHYNRGNL 170 (223)
T ss_dssp CCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHH-HHHT---TTEEEEEEEECGGGC---C
T ss_pred cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHH-HHHH---CCCEEEEEEecCccccccc
Confidence 34 499999999999874 3 2345567999999999987654433333 3332 358999999998766
Q ss_pred -----HHHHHHHHHh-cCcEEEEcCCCcHHHHHHHHHHHHhccc
Q 007207 471 -----HYFLRMLAMI-SRGYYGAAYDLDSIEIQMQKLFTRGFSS 508 (613)
Q Consensus 471 -----~~~L~~lA~~-~gG~~~~v~~~~~l~~~l~~~~~~~~~p 508 (613)
...|+.||.. ++|.|+.+.+.++|...+.++.++++..
T Consensus 171 ~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic~~ 214 (223)
T 2b2x_A 171 STEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFAL 214 (223)
T ss_dssp CCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC--
T ss_pred cchhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhcCc
Confidence 4789999998 8899999999999999888888887653
No 11
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.83 E-value=4.6e-20 Score=175.44 Aligned_cols=174 Identities=16% Similarity=0.236 Sum_probs=136.7
Q ss_pred CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L-~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
..+.|++||||.||||.+ .+...+++++.++..+ .++++|+|+.|++.++...+++. +.+.+..+++.+. ...++
T Consensus 5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~~--~~~~~~~~i~~l~-~~~~~ 80 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQ-KVLPG 80 (185)
T ss_dssp BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC--CHHHHHHHHHHHH-TCCCC
T ss_pred CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccCC--CHHHHHHHHHHHh-hhcCC
Confidence 467899999999999987 5777888888877664 56899999999999998887764 8888999999887 45679
Q ss_pred CCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCchhH-HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207 403 GSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQ-ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~~~-~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l 477 (613)
|+|+++.||+.|.+.+.. .....+.||++|||.+++... ......+.+++ .++++|+||+| +.+...|+.|
T Consensus 81 g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~---~gi~i~~igvg-~~~~~~L~~i 156 (185)
T 3n2n_F 81 GDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRD---LGAIVYAVGVK-DFNETQLARI 156 (185)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH---TTEEEEEEECS-SCCHHHHTTT
T ss_pred CCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHH---CCCEEEEEEec-cCCHHHHHHH
Confidence 999999999999997732 223467999999999876542 11223333333 34899999999 6799999999
Q ss_pred HHhcCcEEEEcCC-CcHHHHHHHHHHHHhc
Q 007207 478 AMISRGYYGAAYD-LDSIEIQMQKLFTRGF 506 (613)
Q Consensus 478 A~~~gG~~~~v~~-~~~l~~~l~~~~~~~~ 506 (613)
|..+ |.++.+.+ .++|...+.++.+++|
T Consensus 157 A~~~-~~~~~~~~~~~~L~~~~~~i~~~iC 185 (185)
T 3n2n_F 157 ADSK-DHVFPVNDGFQALQGIIHSILKKSC 185 (185)
T ss_dssp SSSG-GGEEEHHHHHHHHHHHHHHHHHTBC
T ss_pred hCCC-CCeEEeccHHHHHHHHHHHHHHhcC
Confidence 9765 66667776 8888888888877764
No 12
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.83 E-value=1.2e-19 Score=173.63 Aligned_cols=173 Identities=16% Similarity=0.167 Sum_probs=133.6
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
.+.+++||||.||||.+.+++.+|+++..+++.+.. +++|+|+.|++.+....++....+.+.+.++++.+. ..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~---~~ 80 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQ---RE 80 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCC---CC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHHHHHHhCc---CC
Confidence 578999999999999989999999999999999863 479999999999998888755557777777776443 25
Q ss_pred CCCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207 402 GGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~ 476 (613)
+|+|+++.||..|.+.+... ++..+.+|++|||..++.. .. ..+.+++ .++++|+||+|...+...|+.
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~~--~~-~~~~~~~---~gi~v~~igvG~~~~~~~L~~ 154 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSV--DA-AADAARS---NRVTVFPIGIGDRYDAAQLRI 154 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCC--HH-HHHHHHH---TTEEEEEEEESSSSCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCchH--HH-HHHHHHH---CCCEEEEEEcCCcCCHHHHHH
Confidence 79999999999999988652 2334568889999876542 22 2222332 348999999999999999999
Q ss_pred HHHhcCc-EEEEcCCCcHHHHHH---HHHHHHhc
Q 007207 477 LAMISRG-YYGAAYDLDSIEIQM---QKLFTRGF 506 (613)
Q Consensus 477 lA~~~gG-~~~~v~~~~~l~~~l---~~~~~~~~ 506 (613)
||..++| +++.+.+.+++.... .++++++|
T Consensus 155 iA~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iC 188 (189)
T 1atz_A 155 LAGPAGDSNVVKLQRIEDLPTMVTLGNSFLHKLC 188 (189)
T ss_dssp HTGGGGGGGCEEESSTTHHHHHHHSCSHHHHHC-
T ss_pred HHCCCcccCEEEecChhhHHHHHHHHHHHHHhhc
Confidence 9999875 456778888777654 35555554
No 13
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.83 E-value=5.1e-21 Score=184.23 Aligned_cols=177 Identities=19% Similarity=0.236 Sum_probs=136.1
Q ss_pred CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG 402 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L-~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 402 (613)
..+.+++||||.||||.+..+..++++++.++..+ .++++|+|+.|++.+....++.. ..+.....+.+......+
T Consensus 7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~ 83 (198)
T 1n3y_A 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE---FRRSSNPLSLLASVHQLQ 83 (198)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHH---HHHCSSGGGGGTTCCCCC
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecCc---cCCHHHHHHHHhcCcCCC
Confidence 35789999999999999888999999999999999 68999999999999887766532 122233444454222368
Q ss_pred CCcchHHHHHHHHHHH-hc----CCCCccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecCCC----CHH
Q 007207 403 GSTNICAPLTKAVEML-TN----SRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYC----NHY 472 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l-~~----~~~~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~----~~~ 472 (613)
|+|++..||..|.+.+ .. +++..+.|||+|||.++ +.......+. .+++ .+++||+||+|... +..
T Consensus 84 g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~-~~~~---~gi~i~~igvG~~~~~~~~~~ 159 (198)
T 1n3y_A 84 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIP-MADA---AGIIRYAIGVGLAFQNRNSWK 159 (198)
T ss_dssp SCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHH-HHHH---TTCEEEEEEESGGGGSSTTHH
T ss_pred CCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHH-HHHH---CCCEEEEEEccccccccccHH
Confidence 9999999999999554 32 23456799999999987 4332233232 2332 24899999999876 689
Q ss_pred HHHHHHHhcCcEE-EEcCCCcHHHHHHHHHHHHhcc
Q 007207 473 FLRMLAMISRGYY-GAAYDLDSIEIQMQKLFTRGFS 507 (613)
Q Consensus 473 ~L~~lA~~~gG~~-~~v~~~~~l~~~l~~~~~~~~~ 507 (613)
.|+.||..++|.| +.+.+.+++...+.++.++++.
T Consensus 160 ~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic~ 195 (198)
T 1n3y_A 160 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195 (198)
T ss_dssp HHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred HHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhheec
Confidence 9999999999986 7788889999999999888875
No 14
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.82 E-value=1.1e-19 Score=177.30 Aligned_cols=175 Identities=18% Similarity=0.204 Sum_probs=135.7
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
.+.+++||||.||||. .++.+|+++..+++.|. ++++|+|+.|++.+....++....+...+.++++ .+..
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~~~~~~~i~----~l~~ 79 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAK----KIVQ 79 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHH----TCCC
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCHHHHHHHHH----hccC
Confidence 4789999999999998 59999999999999885 6899999999999988887754445555555554 3433
Q ss_pred -CC-CcchHHHHHHHHHHH-h----cCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----
Q 007207 402 -GG-STNICAPLTKAVEML-T----NSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN---- 470 (613)
Q Consensus 402 -~G-gT~l~~aL~~A~~~l-~----~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~---- 470 (613)
+| +|+++.||..|.+.+ . .+++..+.|||+|||.+++.......+. .+++ .++++|+||+|...+
T Consensus 80 ~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~-~~~~---~gi~i~~igig~~~~~~~~ 155 (213)
T 1pt6_A 80 RGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQ-DCED---ENIQRFSIAILGSYNRGNL 155 (213)
T ss_dssp CCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHH-HHHH---TTEEEEEEEECHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHH-HHHH---CCCEEEEEEeccccccccc
Confidence 44 599999999999874 3 2345577999999999987654333333 3333 348999999997654
Q ss_pred -----HHHHHHHHHh-cCcEEEEcCCCcHHHHHHHHHHHHhccce
Q 007207 471 -----HYFLRMLAMI-SRGYYGAAYDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 471 -----~~~L~~lA~~-~gG~~~~v~~~~~l~~~l~~~~~~~~~p~ 509 (613)
...|+.||.. ++|.|+.+.+.+++...+.++.++++...
T Consensus 156 ~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~~~ 200 (213)
T 1pt6_A 156 STEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFALE 200 (213)
T ss_dssp CCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC--
T ss_pred cchhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhheecc
Confidence 4789999998 78999999999999999999888887643
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.82 E-value=3.2e-19 Score=172.14 Aligned_cols=173 Identities=19% Similarity=0.197 Sum_probs=134.6
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
.+.+++||||.||||. .++.+|+++..+++.+. ++++|+|+.|+++++...++....+...+.++++ .+..
T Consensus 5 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~~~~~~~i~----~l~~ 78 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATS----QTSQ 78 (200)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHH----HCCC
T ss_pred CcccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCHHHHHHHHH----hhhc
Confidence 3689999999999997 59999999999999986 5899999999999998888765445555555555 3433
Q ss_pred -CC-CcchHHHHHHHHHH-Hhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEec-----CCC
Q 007207 402 -GG-STNICAPLTKAVEM-LTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIG-----SYC 469 (613)
Q Consensus 402 -~G-gT~l~~aL~~A~~~-l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG-----~~~ 469 (613)
+| +|++..||..|.+. +.. +++..+.|||+|||.+++.......++. +++ .+++||+||+| .+.
T Consensus 79 ~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~-~~~---~gi~i~~igvg~~~~~~~~ 154 (200)
T 1v7p_C 79 YGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQ-CNH---DNILRFGIAVLGYLNRNAL 154 (200)
T ss_dssp CCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHH-HHH---TTEEEEEEEECHHHHHTTC
T ss_pred cCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHH-HHH---CCCEEEEEEeccccccccc
Confidence 34 69999999999996 432 2345679999999999876544333333 332 34899999994 445
Q ss_pred C----HHHHHHHHHhcCcEE-EEcCCCcHHHHHHHHHHHHhcc
Q 007207 470 N----HYFLRMLAMISRGYY-GAAYDLDSIEIQMQKLFTRGFS 507 (613)
Q Consensus 470 ~----~~~L~~lA~~~gG~~-~~v~~~~~l~~~l~~~~~~~~~ 507 (613)
+ ...|+.||..++|.| +.+.+.+++...+.++.+++|.
T Consensus 155 ~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic~ 197 (200)
T 1v7p_C 155 DTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS 197 (200)
T ss_dssp CCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhcC
Confidence 5 567999999998765 6788999999999999988875
No 16
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.79 E-value=3.1e-20 Score=176.16 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=129.2
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC-CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS 404 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~-~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg 404 (613)
+.|++||||.||||.+.+++.+|+++..+++.+.+ +++|+|+.|++.++...++....+..++..+++.+. ..+|+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~---~~~g~ 78 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVK---HMLLL 78 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCC---CCCBC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhcc---cCCCC
Confidence 57999999999999988999999999999999965 569999999999988877654333335566666554 23689
Q ss_pred cchHHHHHHHHHH-Hhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----HHHHH
Q 007207 405 TNICAPLTKAVEM-LTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HYFLR 475 (613)
Q Consensus 405 T~l~~aL~~A~~~-l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----~~~L~ 475 (613)
|+++.||..|.+. +.. +++..+.+||+|||.+++..... + ..++++|+||+|...+ ...|+
T Consensus 79 T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~~-------~---~~~i~i~~igvG~~~~~~~~~~~L~ 148 (179)
T 1mjn_A 79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID-------A---AKDIIRYIIGIGKHFQTKESQETLH 148 (179)
T ss_dssp CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG-------G---GTTSEEEEEEESGGGCSHHHHHTTG
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcchH-------H---HCCCEEEEEEccccccccccHHHHH
Confidence 9999999999964 432 23456799999999987654211 1 2358999999998776 37899
Q ss_pred HHHHhcCc-EEEEcCCCcHHHHHHHHHHHH
Q 007207 476 MLAMISRG-YYGAAYDLDSIEIQMQKLFTR 504 (613)
Q Consensus 476 ~lA~~~gG-~~~~v~~~~~l~~~l~~~~~~ 504 (613)
.||..++| +++.+.+.++|...+.++.++
T Consensus 149 ~iA~~~~~~~~~~~~~~~~L~~i~~~i~~~ 178 (179)
T 1mjn_A 149 KFASKPASEFVKILDTFEKLKDLCTELQKK 178 (179)
T ss_dssp GGSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred HHhCCccHhcEEEeCCHHHHHHHHHHHHhh
Confidence 99998877 467888888888877776554
No 17
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.77 E-value=3.4e-18 Score=161.83 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=105.7
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhcC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGINF 399 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~~ 399 (613)
.+.+++||||.||||.+.+++.+|+++..+++.|. .+++|+|+.|++.+....++.... +.+.+.++++.+.
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~--- 92 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMP--- 92 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCC---
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCC---
Confidence 37999999999999998899999999999999986 358999999999998887776544 5566666665442
Q ss_pred CCCCCcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207 400 IAGGSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L 474 (613)
..+|+|++..||+.|.+.+.. +++..+.|||+|||.+++.......+. .+++ .+++||+||+|..+|..+|
T Consensus 93 ~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~-~l~~---~gi~v~~igvG~~~~~~~l 168 (178)
T 2xgg_A 93 YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAK-EIRE---LGGIVTVLAVGHYVAAALV 168 (178)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHH-HHHH---TTCEEEEEECC--------
T ss_pred CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHH-HHHH---CCCEEEEEEcCCcCCHHHH
Confidence 368999999999999998642 234567999999999887644433333 3333 2489999999999999888
Q ss_pred HH
Q 007207 475 RM 476 (613)
Q Consensus 475 ~~ 476 (613)
+.
T Consensus 169 ~~ 170 (178)
T 2xgg_A 169 PR 170 (178)
T ss_dssp --
T ss_pred hc
Confidence 75
No 18
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.77 E-value=7.1e-21 Score=181.98 Aligned_cols=174 Identities=18% Similarity=0.201 Sum_probs=126.0
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCeEEEEEeCC-cceeeeccccccCHHHHHHHHHHHhhcCC
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGINFI 400 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L-~~~d~~~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~~~~ 400 (613)
+..+.+++||||+||||.+.+++.+|+++..++..+ .++++|+|+.|++ ......+.+. +... +.++|. .+.
T Consensus 2 ~~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~--~~~~---~~~~i~-~l~ 75 (189)
T 2x31_A 2 EMSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSR--SLTQ---TKRQLQ-GLP 75 (189)
T ss_dssp CSSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCS--CHHH---HHHHHH-HCC
T ss_pred CCCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCC--CHHH---HHHHHh-cCC
Confidence 346899999999999999999999999999999887 8899999999997 5666656543 4444 444554 567
Q ss_pred CCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchhHHH-------HHHHHHHHcCCCCCceEEEEEecCCCCH
Q 007207 401 AGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQIC-------DAMKSRLTNGGSICPRIYTFGIGSYCNH 471 (613)
Q Consensus 401 ~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~~~~-------~~~~~~~~~~~~~~~~i~tigiG~~~~~ 471 (613)
++|+|++..||..|++.+.... +..+.|||+|||.+++..... ..+.+.++.....++++|+||+|.. +.
T Consensus 76 ~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~-~~ 154 (189)
T 2x31_A 76 GGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR-PN 154 (189)
T ss_dssp CCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS-SC
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCC-CH
Confidence 8999999999999999987643 346799999999987532100 0000111111233478999999987 77
Q ss_pred HHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHh
Q 007207 472 YFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG 505 (613)
Q Consensus 472 ~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~ 505 (613)
.+|+.||..++|.|+++.+ .-.+.+.++++.+
T Consensus 155 ~~L~~iA~~~~G~~~~~~~--~~~~~~~~~~~~~ 186 (189)
T 2x31_A 155 PALVDLARTMDAHYIALPR--ATAHKMADVLGAA 186 (189)
T ss_dssp SSSCSTTTEEEESSTTTHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCeEEECCC--cchHHHHHHHHHh
Confidence 8999999999999987743 2234455555543
No 19
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.76 E-value=1.8e-18 Score=190.90 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=139.1
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhh
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGI 397 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~ 397 (613)
+..+.|++||||.||||.+.+++.+|+++..+++.| +++++|+|+.|++++....++... .+.+.+.++++.+..
T Consensus 6 ~~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~ 85 (509)
T 2odp_A 6 RSGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANY 85 (509)
T ss_dssp SSSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCG
T ss_pred CCCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhccc
Confidence 346789999999999999989999999999999888 789999999999999988776432 255666666664432
Q ss_pred cCCC-CCCcchHHHHHHHHHHHhcCC-----------CCccEEEEEecCCcCch---hHHHHHHHHHHHc--CCCCCceE
Q 007207 398 NFIA-GGSTNICAPLTKAVEMLTNSR-----------GSIPIIFLVTDGAVEDE---RQICDAMKSRLTN--GGSICPRI 460 (613)
Q Consensus 398 ~~~~-~GgT~l~~aL~~A~~~l~~~~-----------~~~~~IillTDG~~~~~---~~~~~~~~~~~~~--~~~~~~~i 460 (613)
.... +|||++..||+.|.+++.... ...+.|||+|||..++. ....+.+++.+.. ....+++|
T Consensus 86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 165 (509)
T 2odp_A 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDI 165 (509)
T ss_dssp GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEE
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEE
Confidence 1111 499999999999999884311 23578999999998653 3334444443321 11345899
Q ss_pred EEEEecCC-CCHHHHHHHHHhcCcE--EEEcCCCcHHHHHHHHHHH
Q 007207 461 YTFGIGSY-CNHYFLRMLAMISRGY--YGAAYDLDSIEIQMQKLFT 503 (613)
Q Consensus 461 ~tigiG~~-~~~~~L~~lA~~~gG~--~~~v~~~~~l~~~l~~~~~ 503 (613)
|+||+|.+ .+...|+.||..++|. ++.+.+.+++...+.+++.
T Consensus 166 ~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~ 211 (509)
T 2odp_A 166 YAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD 211 (509)
T ss_dssp EEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE
T ss_pred EEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhc
Confidence 99999998 9999999999999998 8899998888888777654
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.76 E-value=3.8e-18 Score=187.65 Aligned_cols=181 Identities=17% Similarity=0.242 Sum_probs=140.1
Q ss_pred CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhhc-C
Q 007207 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGIN-F 399 (613)
Q Consensus 326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~-~ 399 (613)
+.|++||||.||||.+.+++.+|+++..+++.+ +.+++|+|+.|++.+....++..+ .+.+.+.++++.+... .
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 80 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDH 80 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGS
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccc
Confidence 468999999999999899999999999999865 457999999999998877643322 3567777777766421 1
Q ss_pred CCCCCcchHHHHHHHHHHHhcC--------CCCccEEEEEecCCcCc---hhHHHHHHHHHH------HcCCCCCceEEE
Q 007207 400 IAGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVED---ERQICDAMKSRL------TNGGSICPRIYT 462 (613)
Q Consensus 400 ~~~GgT~l~~aL~~A~~~l~~~--------~~~~~~IillTDG~~~~---~~~~~~~~~~~~------~~~~~~~~~i~t 462 (613)
..+|+|++..||..|.+.+... ++..+.|||+|||..+. .....+.+++.. .+....++++|+
T Consensus 81 ~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 160 (497)
T 1rrk_A 81 KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYV 160 (497)
T ss_dssp CCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEE
T ss_pred cccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEEE
Confidence 2578999999999999998432 23467999999999874 333334443331 111223589999
Q ss_pred EEecCCCCHHHHHHHHHhcCc--EEEEcCCCcHHHHHHHHHHHHhc
Q 007207 463 FGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQMQKLFTRGF 506 (613)
Q Consensus 463 igiG~~~~~~~L~~lA~~~gG--~~~~v~~~~~l~~~l~~~~~~~~ 506 (613)
||+|...+...|+.||..++| .|+.+.+.++|...+.+++++..
T Consensus 161 igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~ 206 (497)
T 1rrk_A 161 FGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQ 206 (497)
T ss_dssp EECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGG
T ss_pred ecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCC
Confidence 999999999999999999999 99999999999999888776554
No 21
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.75 E-value=3.2e-18 Score=197.49 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=143.6
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhh
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGI 397 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~ 397 (613)
+..+.||+||||.||||.+.+++.+|+++..+++.|. .++||+|+.|++++....++... .+.+.+.++++.+..
T Consensus 240 ~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~ 319 (741)
T 3hrz_D 240 PSGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY 319 (741)
T ss_dssp TTCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCG
T ss_pred CCCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhccc
Confidence 3457899999999999999899999999999998875 46899999999999888776542 244444444443321
Q ss_pred cC-CCCCCcchHHHHHHHHHHHhcC--------CCCccEEEEEecCCcCch---hHHHHHHHHHH------HcCCCCCce
Q 007207 398 NF-IAGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVEDE---RQICDAMKSRL------TNGGSICPR 459 (613)
Q Consensus 398 ~~-~~~GgT~l~~aL~~A~~~l~~~--------~~~~~~IillTDG~~~~~---~~~~~~~~~~~------~~~~~~~~~ 459 (613)
.. ..+|||+++.||..|++.+... .+..+.|||||||..+.. ....+.+++.. +.....+++
T Consensus 320 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~ 399 (741)
T 3hrz_D 320 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 399 (741)
T ss_dssp GGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEE
T ss_pred ccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCee
Confidence 00 1789999999999999998321 123568999999987633 33333333321 123345689
Q ss_pred EEEEEecCCCCHHHHHHHHHhcCcE--EEEcCCCcHHHHHHHHHHHHhccceeee
Q 007207 460 IYTFGIGSYCNHYFLRMLAMISRGY--YGAAYDLDSIEIQMQKLFTRGFSSVLAN 512 (613)
Q Consensus 460 i~tigiG~~~~~~~L~~lA~~~gG~--~~~v~~~~~l~~~l~~~~~~~~~p~l~~ 512 (613)
||+||+|.+.|...|+.||..++|. ++.+.+.++|.+.+.+++++++...+..
T Consensus 400 i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~~~~~CG 454 (741)
T 3hrz_D 400 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCG 454 (741)
T ss_dssp EEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTTSTT
T ss_pred EEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999994 8889999999999999999876544433
No 22
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.65 E-value=2.9e-17 Score=194.66 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=139.3
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCC-CeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPG-DSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA 401 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~-d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~ 401 (613)
+..+.||+||||.||||.+.+++.+|+++..+++.+.+. +||+|+.|++.++...++....+.+.+.++++.+. ..
T Consensus 127 ~~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~ai~~i~---~~ 203 (1095)
T 3k6s_A 127 PRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVH---QL 203 (1095)
T ss_dssp CCCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCC---CC
T ss_pred CCCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHHHHHHhhhh---cc
Confidence 345789999999999999989999999999999999864 89999999999998888765444445555555442 45
Q ss_pred CCCcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecCC----CCH
Q 007207 402 GGSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSY----CNH 471 (613)
Q Consensus 402 ~GgT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~----~~~ 471 (613)
+|+|+++.||..|++.+.. +++..+.||++|||..+ +.......+++. ++ .++++|+||+|.. .+.
T Consensus 204 gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~-r~---~GI~i~aIGVG~~~~~~~d~ 279 (1095)
T 3k6s_A 204 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMA-DA---AGIIRYAIGVGLAFQNRNSW 279 (1095)
T ss_dssp CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHH-HH---HCEEECCEEBSSGGGSTTSS
T ss_pred cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHH-HH---CCCEEEEEecccccccccCH
Confidence 7999999999999886532 12346799999999985 433333333322 22 2489999999986 588
Q ss_pred HHHHHHHHhcCc-EEEEcCCCcHHHHHHHHHHHHhccc
Q 007207 472 YFLRMLAMISRG-YYGAAYDLDSIEIQMQKLFTRGFSS 508 (613)
Q Consensus 472 ~~L~~lA~~~gG-~~~~v~~~~~l~~~l~~~~~~~~~p 508 (613)
..|+.||..++| +++.+.+.++|...+.++.++++..
T Consensus 280 ~eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~Ic~i 317 (1095)
T 3k6s_A 280 KELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI 317 (1095)
T ss_dssp HHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHTC
T ss_pred HHHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhhhcc
Confidence 999999998876 7778888899988888888877654
No 23
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.61 E-value=2.2e-14 Score=137.02 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=112.5
Q ss_pred ceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhh
Q 007207 327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGI 397 (613)
Q Consensus 327 ~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~ 397 (613)
..++|+||.|+||.. .|++.+|.++..|+.. .+++++++|++|+++ ++...|.+. +...+..+++
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~--d~~~i~~~L~---- 76 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTR--DYGKFLSAMH---- 76 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEES--CHHHHHHHHT----
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCC--CHHHHHHHHH----
Confidence 568999999999974 4899999999887754 367899999999994 888777764 6665555554
Q ss_pred cCCCCCCcchHHHHHHHHHHHhcCCC---CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC-CHHH
Q 007207 398 NFIAGGSTNICAPLTKAVEMLTNSRG---SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC-NHYF 473 (613)
Q Consensus 398 ~~~~~GgT~l~~aL~~A~~~l~~~~~---~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~-~~~~ 473 (613)
.+.++|+|++..||..|.+.+..... ..+.||+++|+...++.+..+.++ .+++ .+++|++||+|... +..
T Consensus 77 ~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~-~lk~---~gi~v~~Ig~G~~~~~~~- 151 (192)
T 2x5n_A 77 DLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAK-RMKK---NNVAIDIIHIGELQNESA- 151 (192)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHH-HHHH---TTEEEEEEEESCC---CH-
T ss_pred cCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHH-HHHH---CCCEEEEEEeCCCCccHH-
Confidence 46778999999999999999986542 223466666665444444444433 3333 34999999999764 436
Q ss_pred HHHHHHhc----CcEEEEcCCCc
Q 007207 474 LRMLAMIS----RGYYGAAYDLD 492 (613)
Q Consensus 474 L~~lA~~~----gG~~~~v~~~~ 492 (613)
|+.+|+.+ +++|+.+....
T Consensus 152 l~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 152 LQHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp HHHHHHHHCSTTCCEEEEECCCS
T ss_pred HHHHHHhccCCCceEEEEecCcc
Confidence 99999983 45677666665
No 24
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.8e-14 Score=143.36 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=111.2
Q ss_pred eEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcc-eeeeccccccCHHHHHHHHHHHhhc
Q 007207 328 DVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGIN 398 (613)
Q Consensus 328 ~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~~ 398 (613)
.++||||+|+||.. .|++.+|.++..+++. +++.++++||+|.+.. .++.+.+. +...+..+++ .
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~--D~~~il~aL~----~ 78 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTA--EFGKILAGLH----D 78 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEES--CHHHHHHHHT----T
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcc--hHHHHHHHhh----h
Confidence 37999999999974 4899999999998874 5689999999997764 55555543 6665555554 6
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCch-hHHHHHHHHHHHcCCCCCceEEEEEecC-CCCHHHH
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDE-RQICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFL 474 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~-~~~~~~~~~~~~~~~~~~~~i~tigiG~-~~~~~~L 474 (613)
+.++|+|++..||+.|+..+.... .....||++|||..++. .++...+++..+ .+++|++||||. +.|...|
T Consensus 79 l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk----~gI~v~vIgFG~~~~n~~kL 154 (268)
T 4b4t_W 79 TQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKK----NNVAVDIINFGEIEQNTELL 154 (268)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH----HTEEEEEEEESSCCSSCCHH
T ss_pred cCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEEeCCCccchHHH
Confidence 789999999999999999997653 34568999999976543 444444444433 248999999995 4577899
Q ss_pred HHHHHhcCc
Q 007207 475 RMLAMISRG 483 (613)
Q Consensus 475 ~~lA~~~gG 483 (613)
+.+++..+|
T Consensus 155 e~l~~~~Ng 163 (268)
T 4b4t_W 155 DEFIAAVNN 163 (268)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhcC
Confidence 999887655
No 25
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.49 E-value=1.2e-13 Score=159.38 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=87.0
Q ss_pred CCCCceEEEEEeCCCCCCCC------cHHHHHHHHHHHHHhCC--CCCeEEEEEeCCccee------eec----------
Q 007207 323 KVFKKDVIFIVDISGSMQGK------PLEDTKNALAVALSKLD--PGDSFNIVAFNGETYL------FST---------- 378 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~------~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~------~~~---------- 378 (613)
...+.+|+||||.||||.+. |++.+|+++..+++.|. +++||+||.|++++.. ..+
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n 300 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN 300 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence 46789999999999999986 47889999999998774 5899999999987532 000
Q ss_pred -----------c----------ccccCHHHHHHHHHHHhh---------cCCCCCCcchHHHHHHHHHHHhc-C-CCCcc
Q 007207 379 -----------S----------MELATKEAVERAHQWIGI---------NFIAGGSTNICAPLTKAVEMLTN-S-RGSIP 426 (613)
Q Consensus 379 -----------~----------~~~~~~~~~~~a~~~i~~---------~~~~~GgT~l~~aL~~A~~~l~~-~-~~~~~ 426 (613)
. ....+..++..+.+.|.. .+.++|||++..||..|+++|.. . +...+
T Consensus 301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~k 380 (893)
T 2ww8_A 301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQK 380 (893)
T ss_dssp CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEE
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCe
Confidence 0 001245566666666641 13458999999999999999973 2 35678
Q ss_pred EEEEEecCCcC
Q 007207 427 IIFLVTDGAVE 437 (613)
Q Consensus 427 ~IillTDG~~~ 437 (613)
.|||||||.++
T Consensus 381 vIILLTDG~pt 391 (893)
T 2ww8_A 381 VIFHITDGVPT 391 (893)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEcCCCCC
Confidence 99999999975
No 26
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.30 E-value=6e-12 Score=139.27 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=90.6
Q ss_pred CCCCceEEEEEeCCCCCCC----CcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc
Q 007207 323 KVFKKDVIFIVDISGSMQG----KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN 398 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g----~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~ 398 (613)
+..+.+++|+||+||||.+ .++...+.++...+..+.++|+++|+.|++.... .+.+. + ..+.++++.+. .
T Consensus 365 ~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~-~~~t~--~-~~l~~~l~~l~-~ 439 (538)
T 1yvr_A 365 EPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLP-CPITV--N-MLLHEVVEKMS-D 439 (538)
T ss_dssp CCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEEC-CSCCT--T-SCHHHHHHHHT-T
T ss_pred CCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceE-cCCCC--c-ccHHHHHHHHh-c
Confidence 3467899999999999985 3455533333333344567899999999984332 23322 2 23778888886 3
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCC
Q 007207 399 FIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSY 468 (613)
Q Consensus 399 ~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~ 468 (613)
+ ++|||+++.+|..|++. ......|||+|||..+.+. ...+.+.+..++.+ ..+++|+||+|+.
T Consensus 440 ~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~-~~v~l~~igig~~ 504 (538)
T 1yvr_A 440 I-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKMG-IPAKLIVCAMTSN 504 (538)
T ss_dssp C-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHT-CCCEEEEEECSSS
T ss_pred C-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCcEEEEEEecCC
Confidence 3 78999999999999876 2345789999999876432 23333333222212 3478899999974
No 27
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.26 E-value=2e-11 Score=135.67 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=109.6
Q ss_pred ceEEEEEeCCCCCCC------CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcce--------------eeecccccc
Q 007207 327 KDVIFIVDISGSMQG------KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY--------------LFSTSMELA 383 (613)
Q Consensus 327 ~~vvfviD~SgSM~g------~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~--------------~~~~~~~~~ 383 (613)
..++|+||+|+||.. .+++.+++++..++.+ .+++|+++||.|+++.. .+.++ ...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l-~~~ 86 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHL-MLP 86 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEE-ECC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecC-CCC
Confidence 679999999999974 5899999999999984 68899999999998762 11222 112
Q ss_pred CHHHHHHHHHHHhhcCCCC-CCcchHHHHHHHHHHHhcC--CC--CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCc
Q 007207 384 TKEAVERAHQWIGINFIAG-GSTNICAPLTKAVEMLTNS--RG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICP 458 (613)
Q Consensus 384 ~~~~~~~a~~~i~~~~~~~-GgT~l~~aL~~A~~~l~~~--~~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~ 458 (613)
+...+ ..|...+.++ ++|++..||..|.+++... .. ..+.|||+|||..+.+......+.+.+++ .++
T Consensus 87 ~~~~l----~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~---~gI 159 (565)
T 1jey_B 87 DFDLL----EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKK---CDI 159 (565)
T ss_dssp CHHHH----HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHH---TTE
T ss_pred CHHHH----HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHh---cCc
Confidence 33333 2333224444 7899999999999999764 22 35799999999865322222333333333 348
Q ss_pred eEE-EEEecCC--------------------------------CCHHHHHHHHHhcCc-----EEEEcCC
Q 007207 459 RIY-TFGIGSY--------------------------------CNHYFLRMLAMISRG-----YYGAAYD 490 (613)
Q Consensus 459 ~i~-tigiG~~--------------------------------~~~~~L~~lA~~~gG-----~~~~v~~ 490 (613)
+|+ +||+|.+ .|..+|+.||..++| .|+.+.+
T Consensus 160 ~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~ 229 (565)
T 1jey_B 160 SLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSE 229 (565)
T ss_dssp EEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHH
T ss_pred EEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHH
Confidence 999 8888753 124569999999999 8887654
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.03 E-value=3e-10 Score=125.23 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCCceEEEEEeCCCCCCC-C-----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhh
Q 007207 324 VFKKDVIFIVDISGSMQG-K-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI 397 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~g-~-----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 397 (613)
..+.+++++||+||||.+ . ++..+..++...+-.+..+++++|+.|++..... +.+. ...+.++++.+.
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~-~~~~---~~~l~~~l~~l~- 434 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-GITP---RDTLESAMQKAQ- 434 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEEC-CCCT---TCCHHHHHHHTC-
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEc-CCCc---chhHHHHHHHHh-
Confidence 467899999999999986 2 2333333332233345568899999999854332 2221 245667777775
Q ss_pred cCCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCC--------
Q 007207 398 NFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSY-------- 468 (613)
Q Consensus 398 ~~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~-------- 468 (613)
.. .+|||++..+|..+.+. ......|||+|||+.+... ...+.+....+. ...++++++||+|..
T Consensus 435 ~~-~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~-~~~~~klv~i~l~~~~~~~~~~~ 508 (535)
T 2nvo_A 435 SV-SFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWAGQVHPTVALDQYAQK-MGRAPKLIVVGLTATEFSIADPQ 508 (535)
T ss_dssp CS-SBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHH-HSCCCEEEEEETTCSCCCCSCTT
T ss_pred hC-CCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHh-hCCCCeEEEEeccCCCcccCCCC
Confidence 32 37999999999887654 2345789999999876432 223333333322 123489999999863
Q ss_pred ---------CCHHHHHHHHHhcCcEE
Q 007207 469 ---------CNHYFLRMLAMISRGYY 485 (613)
Q Consensus 469 ---------~~~~~L~~lA~~~gG~~ 485 (613)
.+...|+.||+.++|.|
T Consensus 509 ~~~~~~i~g~se~~l~~Ia~~~~G~~ 534 (535)
T 2nvo_A 509 RRDMLDVVGFDAAAPNVMTAFARGEV 534 (535)
T ss_dssp CSSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred CCCceeeeCCCHHHHHHHHHHhCCCc
Confidence 23456777777777765
No 29
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.90 E-value=1.2e-09 Score=106.05 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=69.8
Q ss_pred CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcc---e-eeeccccccCHHHHHHHHHHHh
Q 007207 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGET---Y-LFSTSMELATKEAVERAHQWIG 396 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~---~-~~~~~~~~~~~~~~~~a~~~i~ 396 (613)
..+.+++||||+||||. .++..+|.++..++..+. ..++|+||.|+++. . .+.+++... .+...+.
T Consensus 132 ~~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~---~~~~~l~--- 204 (242)
T 3rag_A 132 EVALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV---NVAALEA--- 204 (242)
T ss_dssp HSCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC---CHHHHHH---
T ss_pred cCCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH---HHHHHHh---
Confidence 46799999999999998 489999999999998764 47899999999975 2 222544321 3333333
Q ss_pred hcCCCCCCcchHHHHHHHHHHHhc
Q 007207 397 INFIAGGSTNICAPLTKAVEMLTN 420 (613)
Q Consensus 397 ~~~~~~GgT~l~~aL~~A~~~l~~ 420 (613)
.+.++|+|+++.||..|++++.+
T Consensus 205 -~L~agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 205 -ELVARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp -HCCCCSCCCHHHHHHHHHHHHHH
T ss_pred -hCCCCCCCcHHHHHHHHHHHHHH
Confidence 56789999999999999998853
No 30
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.89 E-value=8.6e-09 Score=115.33 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=95.1
Q ss_pred Cce-EEEEEeCCCCCCC-------CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcce----------eeeccccccC
Q 007207 326 KKD-VIFIVDISGSMQG-------KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY----------LFSTSMELAT 384 (613)
Q Consensus 326 ~~~-vvfviD~SgSM~g-------~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~----------~~~~~~~~~~ 384 (613)
.++ ++|+||+|+||.. .+++.+++++..++.+ -+++|++|||.|+++.. .+.++. ..+
T Consensus 34 ~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~-~~~ 112 (609)
T 1jey_A 34 GRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELD-NPG 112 (609)
T ss_dssp CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEE-CCC
T ss_pred CceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCC-CCC
Confidence 345 9999999999975 3799999999999986 36789999999999872 333432 234
Q ss_pred HHHHHHHHHHHh--------hcCCCCCCcchHHHHHHHHHHHhcCCC--CccEEEEEecCCcCchhH-----HHHHHHHH
Q 007207 385 KEAVERAHQWIG--------INFIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQ-----ICDAMKSR 449 (613)
Q Consensus 385 ~~~~~~a~~~i~--------~~~~~~GgT~l~~aL~~A~~~l~~~~~--~~~~IillTDG~~~~~~~-----~~~~~~~~ 449 (613)
...+....+.+. .....+.+|++..||..|.+++..... ..+.|||||||....+.. ....+.+.
T Consensus 113 ~~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~ 192 (609)
T 1jey_A 113 AKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGD 192 (609)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHH
Confidence 444443333221 001224689999999999999986532 367999999998643221 22223333
Q ss_pred HHcCCCCCceEEEEEecCC
Q 007207 450 LTNGGSICPRIYTFGIGSY 468 (613)
Q Consensus 450 ~~~~~~~~~~i~tigiG~~ 468 (613)
+.. .+++|++||+|..
T Consensus 193 l~~---~gI~i~~igig~~ 208 (609)
T 1jey_A 193 LRD---TGIFLDLMHLKKP 208 (609)
T ss_dssp HHH---HTEEEEEEEBCCT
T ss_pred HHh---cCcEEEEEecCCC
Confidence 333 3499999999965
No 31
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.39 E-value=0.00011 Score=84.56 Aligned_cols=234 Identities=13% Similarity=0.099 Sum_probs=140.3
Q ss_pred EEecCCCCCCCCCCceEEEEEeCCCCCCCC-cHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeee--cccc-----
Q 007207 313 YLLPGTAKSRKVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFS--TSME----- 381 (613)
Q Consensus 313 ~~~P~~~~~~~~~~~~vvfviD~SgSM~g~-~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~--~~~~----- 381 (613)
++.|.+.......|--++||||+|.++-.. -++.+++++...|+.|++ +.+|++|+|++..+.+. ....
T Consensus 174 y~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~ 253 (810)
T 1pcx_A 174 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 253 (810)
T ss_dssp EECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC----
T ss_pred EEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCcccc
Confidence 444543323345678899999999877322 377899999999999986 57999999999875541 1000
Q ss_pred ---------------------------ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEe
Q 007207 382 ---------------------------LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVT 432 (613)
Q Consensus 382 ---------------------------~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillT 432 (613)
.-....+..+++.|.... ...+.+.++.||+.|..++.... ..|++++
T Consensus 254 ~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~G---GrI~~F~ 330 (810)
T 1pcx_A 254 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---GKIIVVS 330 (810)
T ss_dssp ---CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTC---EEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhcC---CEEEEEe
Confidence 012456667777766322 23578889999999999997532 3688899
Q ss_pred cCCcCchhH--------------------------HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEE
Q 007207 433 DGAVEDERQ--------------------------ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYG 486 (613)
Q Consensus 433 DG~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~ 486 (613)
+|.++.+.. ..+.+...+.+. ...+.+|.++ +..++-..|..+++.|||..+
T Consensus 331 sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~-gi~VDlF~~s-~~~~dla~l~~l~~~TGG~v~ 408 (810)
T 1pcx_A 331 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKV-QITVDLFLAS-EDYMDVASLSNLSRFTAGQTH 408 (810)
T ss_dssp SSCCCSSTTCCCC--------------------CCHHHHHHHHHHHT-TEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHHC-CeEEEEEEcc-CCccChHHHHHHHhcCCcEEE
Confidence 987642100 011222222222 2334555554 345788999999999999987
Q ss_pred EcCCCcHH--HH--HHHH-HHHHhccceeeeE--EEEecCCCCceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 007207 487 AAYDLDSI--EI--QMQK-LFTRGFSSVLANI--AIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF 550 (613)
Q Consensus 487 ~v~~~~~l--~~--~l~~-~~~~~~~p~l~~i--~l~~~~~~~~~~v~p---------~~ip~l~~g~~~~v~g~~~~~~ 550 (613)
+..+...- .+ +|.+ +.+.+..+...+. +++...++.....+- -.++.+.....+.+.-.+.++.
T Consensus 409 ~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l 488 (810)
T 1pcx_A 409 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI 488 (810)
T ss_dssp EEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCC
T ss_pred EcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCC
Confidence 76665321 11 2332 2223333333333 344334332211111 1346677778888888877654
Q ss_pred C
Q 007207 551 P 551 (613)
Q Consensus 551 ~ 551 (613)
+
T Consensus 489 ~ 489 (810)
T 1pcx_A 489 M 489 (810)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.32 E-value=0.00011 Score=84.15 Aligned_cols=175 Identities=13% Similarity=0.136 Sum_probs=111.9
Q ss_pred CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccc-----------------------
Q 007207 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM----------------------- 380 (613)
Q Consensus 324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~----------------------- 380 (613)
+.|.-++||||+|.+. ..++.++++++..|+.|+++.+|+||+|++.++.+.-..
T Consensus 130 p~pp~~vFvIDvS~~a--~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m 207 (769)
T 2nut_A 130 QMPLIFLYVVDTCMED--EDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM 207 (769)
T ss_dssp CCCCEEEEEEECCSCH--HHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred CCCCEEEEEEECCccH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence 4577899999999884 468999999999999999999999999999876531000
Q ss_pred ccc-----------------------------CHHHHHHHHHHHhhcC-----CCCCCcchHHHHHHHHHHHhcC-CCCc
Q 007207 381 ELA-----------------------------TKEAVERAHQWIGINF-----IAGGSTNICAPLTKAVEMLTNS-RGSI 425 (613)
Q Consensus 381 ~~~-----------------------------~~~~~~~a~~~i~~~~-----~~~GgT~l~~aL~~A~~~l~~~-~~~~ 425 (613)
... ....+..+++.|.... ...+.+.++.||..|..++... ++..
T Consensus 208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~G 287 (769)
T 2nut_A 208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTG 287 (769)
T ss_dssp HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCC
Confidence 000 1123444555544211 1256789999999999999731 1223
Q ss_pred cEEEEEecCCcCchh--------------------H----------HHHHHHHHHHcCCCCCceEEEEEec-CCCCHHHH
Q 007207 426 PIIFLVTDGAVEDER--------------------Q----------ICDAMKSRLTNGGSICPRIYTFGIG-SYCNHYFL 474 (613)
Q Consensus 426 ~~IillTDG~~~~~~--------------------~----------~~~~~~~~~~~~~~~~~~i~tigiG-~~~~~~~L 474 (613)
..|++++.|.++.+. + ..+.+...+.+. ++.|..|.++ ..++-..|
T Consensus 288 GrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~---gi~VDlF~~~~~~vdla~l 364 (769)
T 2nut_A 288 ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATT---GHVIDIYACALDQTGLLEM 364 (769)
T ss_dssp CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHH---TCEEEEEEECSSCCCHHHH
T ss_pred cEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHC---CeEEEEEeccCCccChHHH
Confidence 468888888764110 0 011122222222 2445555554 45788999
Q ss_pred HHHHHhcCcEEEEcCCCc--HHHHHHHHHHH
Q 007207 475 RMLAMISRGYYGAAYDLD--SIEIQMQKLFT 503 (613)
Q Consensus 475 ~~lA~~~gG~~~~v~~~~--~l~~~l~~~~~ 503 (613)
+.+++.|||..++..+.. .+.+.+.+.+.
T Consensus 365 ~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~ 395 (769)
T 2nut_A 365 KCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT 395 (769)
T ss_dssp THHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred HHHhhcCCceEEEcCCCchhhHHHHHHHHHh
Confidence 999999999988877654 34444444443
No 33
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.27 E-value=2.1e-06 Score=83.21 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=55.9
Q ss_pred CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC-----CCHHHHHHHHHhcCcEEEEcCCCcHHHHH
Q 007207 423 GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-----CNHYFLRMLAMISRGYYGAAYDLDSIEIQ 497 (613)
Q Consensus 423 ~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~-----~~~~~L~~lA~~~gG~~~~v~~~~~l~~~ 497 (613)
+..+.|||+|||..+.+.......+. +++ .+++||+||+|+. .+...|+.||..|||.|+.+.. .++.+.
T Consensus 8 ~~~k~iillTDG~~~~g~~p~~aa~~-a~~---~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l~~~ 82 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGPDPVEAARR-AHR---HGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADISAT 82 (242)
T ss_dssp CCEEEEEEEESSCCCSSSCHHHHHHH-HHH---TTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGHHHH
T ss_pred CCccEEEEEccCCCCCCCCHHHHHHH-HHH---CCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHHHHH
Confidence 45689999999998754444444433 333 2489999999753 2357899999999999999854 777766
Q ss_pred HHHHHHHh
Q 007207 498 MQKLFTRG 505 (613)
Q Consensus 498 l~~~~~~~ 505 (613)
++.+.++.
T Consensus 83 ~~~~t~~~ 90 (242)
T 3rag_A 83 AQMMTHQT 90 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555444
No 34
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.18 E-value=0.0003 Score=81.48 Aligned_cols=175 Identities=15% Similarity=0.134 Sum_probs=114.2
Q ss_pred EEecCCCCCCCCCCceEEEEEeCCCCCCCC-cHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeee--cc-------
Q 007207 313 YLLPGTAKSRKVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFS--TS------- 379 (613)
Q Consensus 313 ~~~P~~~~~~~~~~~~vvfviD~SgSM~g~-~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~--~~------- 379 (613)
++.|.+.......|--++||||+|.+.-.. -++.+++++...|+.|++ +.+|+||+|++....+. ..
T Consensus 290 yi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~ 369 (926)
T 1m2v_B 290 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 369 (926)
T ss_dssp EECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-------
T ss_pred EEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCccc
Confidence 445544323345678899999999876323 377899999999999986 57999999998765431 00
Q ss_pred -----------------------cc--ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEe
Q 007207 380 -----------------------ME--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVT 432 (613)
Q Consensus 380 -----------------------~~--~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillT 432 (613)
.. .-....+..+++.|.... .....+.++.||+.|..++.... ..|++++
T Consensus 370 ~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~G---GrI~~F~ 446 (926)
T 1m2v_B 370 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---GKIIVVS 446 (926)
T ss_dssp --CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTC---EEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhhC---CEEEEEe
Confidence 00 013566777777776322 23567889999999999997532 3688888
Q ss_pred cCCcCchh----------------H----------HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEE
Q 007207 433 DGAVEDER----------------Q----------ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYG 486 (613)
Q Consensus 433 DG~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~ 486 (613)
.|.++.+. + ..+.+...+.+. ...+.+|.++. ..++-..|..+++.|||..+
T Consensus 447 sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~-gisVDlF~~s~-~~vdla~l~~l~~~TGG~v~ 524 (926)
T 1m2v_B 447 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKV-QITVDLFLASE-DYMDVASLSNLSRFTAGQTH 524 (926)
T ss_dssp SSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHH-TEEEEEEEEES-SCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHc-CeEEEEEEccC-CCcChHHHHHHHhcCCceEE
Confidence 88764110 0 112222222221 23355666553 45788999999999999987
Q ss_pred EcCCCc
Q 007207 487 AAYDLD 492 (613)
Q Consensus 487 ~v~~~~ 492 (613)
+..+..
T Consensus 525 ~y~~F~ 530 (926)
T 1m2v_B 525 FYPGFS 530 (926)
T ss_dssp EEESCC
T ss_pred EcCCCc
Confidence 766553
No 35
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.17 E-value=1.1e-05 Score=76.96 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcc-eeeeccccccCHHHHHHHHHHHhhcCC
Q 007207 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGINFI 400 (613)
Q Consensus 325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~~~~ 400 (613)
.|.|++||+|.|+||.. .++.+|+.+..+.+.| ..+-||++..|.+.. +...+++. +.....+.++ ...
T Consensus 2 ~pvDl~fl~D~S~SM~~-di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~--d~~~F~~~v~----~~~ 74 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQG-HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTA--DSSQFQRELR----KQL 74 (212)
T ss_dssp CCEEEEEEEECCGGGTT-THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEES--CHHHHHHHHH----TCC
T ss_pred CceEEEEEEeCCCcchh-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCC--CHHHHHHHHh----hcc
Confidence 47899999999999976 5999999888877655 457899999998873 22334433 5555555554 455
Q ss_pred CCCCcc----hHHHHHHHH---HHHhcCCCCccEEEEEecCCcC
Q 007207 401 AGGSTN----ICAPLTKAV---EMLTNSRGSIPIIFLVTDGAVE 437 (613)
Q Consensus 401 ~~GgT~----l~~aL~~A~---~~l~~~~~~~~~IillTDG~~~ 437 (613)
..||-+ -..||..|+ +.+.-++ ..+.+||+||+.+.
T Consensus 75 vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H 117 (212)
T 2iue_A 75 VSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFH 117 (212)
T ss_dssp CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBC
T ss_pred ccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcc
Confidence 555433 244555554 2232233 67899999999874
No 36
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=98.16 E-value=0.00058 Score=77.66 Aligned_cols=175 Identities=11% Similarity=0.136 Sum_probs=110.8
Q ss_pred EEecCCCCCCCCCCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEeCCcceeee------------
Q 007207 313 YLLPGTAKSRKVFKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLDPGD--SFNIVAFNGETYLFS------------ 377 (613)
Q Consensus 313 ~~~P~~~~~~~~~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~~~d--~~~Ii~F~~~~~~~~------------ 377 (613)
++.|.+....++.|-.++||||+|-. +...-++.+++++...|+.|+++. +|++|+|++..+.+.
T Consensus 147 y~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlv 226 (751)
T 3eh1_A 147 FIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLI 226 (751)
T ss_dssp EEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEE
T ss_pred EEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeec
Confidence 34454332234568889999999842 322347888999999999998755 899999999754311
Q ss_pred ---------ccc----c--ccCHHHHHHHHHHHhhcCC--CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh
Q 007207 378 ---------TSM----E--LATKEAVERAHQWIGINFI--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER 440 (613)
Q Consensus 378 ---------~~~----~--~~~~~~~~~a~~~i~~~~~--~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~ 440 (613)
|.. . .-....+..+++.|..... ....+.++.||+.|..++.... ..|++++.|.++-+.
T Consensus 227 v~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~G---GrI~~F~sg~pt~Gp 303 (751)
T 3eh1_A 227 VSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTG---GRVSVFQTQLPSLGA 303 (751)
T ss_dssp ESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTC---EEEEEEECSCCCSST
T ss_pred cccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcCC---CEEEEEecCCCCCCC
Confidence 100 0 1245677788887753221 1245678999999999987532 357777777654210
Q ss_pred -------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCc
Q 007207 441 -------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLD 492 (613)
Q Consensus 441 -------------------------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~ 492 (613)
...+.+...+.+. ...+.+|.++ ...++-..|..+++.|||..++..+..
T Consensus 304 G~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~-~i~VDlF~~s-~~~~dlatl~~l~~~TGG~v~~y~~F~ 378 (751)
T 3eh1_A 304 GLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQ-QTAVDLFLLS-SQYSDLASLACMSKYSAGCIYYYPSFH 378 (751)
T ss_dssp TCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHT-TEEEEEEECC-SSCCCHHHHTHHHHTTTCCEEECTTCB
T ss_pred CccccccccccCCCchhhhhhcchHHHHHHHHHHHHhc-CceEEEEEcc-CcccChHhHHHHHhhcCceEEEeCCcc
Confidence 1123333333222 2234454443 245788899999999999988876654
No 37
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.04 E-value=5.7e-05 Score=84.82 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=109.8
Q ss_pred ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCccee---------
Q 007207 308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK---LDPGDSFNIVAFNGETYL--------- 375 (613)
Q Consensus 308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~~--------- 375 (613)
-.|.+.+.+.. ..|.|++||+|.|+||.. .++.+|+....+++. +..+-||++..|.+....
T Consensus 98 ~~f~~~~~~~~-----~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~ 171 (690)
T 3fcs_B 98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE 171 (690)
T ss_dssp EEEEEEEECCB-----TCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTT
T ss_pred EEEEEEEeccC-----CCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhh
Confidence 35666666543 367999999999999974 577777776666544 456789999999884311
Q ss_pred ---------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcc----hHHHHHHHH---HHHhcCCCCccE
Q 007207 376 ---------------------FSTSMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPI 427 (613)
Q Consensus 376 ---------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~----l~~aL~~A~---~~l~~~~~~~~~ 427 (613)
..+++ .+.. +..+.|+ .....|+-+ -.+||..|+ +.+.-+++..+.
T Consensus 172 ~~~~pc~~~~~~c~~~f~f~~~l~lt--~~~~---~f~~~v~-~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rl 245 (690)
T 3fcs_B 172 ALENPCYDMKTTCLPMFGYKHVLTLT--DQVT---RFNEEVK-KQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL 245 (690)
T ss_dssp TTTCTTSSSSSCCCCCCSEEEEEEEE--SCHH---HHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEE
T ss_pred hccCCCcCCCCCCCCCccceeecccC--CCHH---HHHHHhh-ceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEE
Confidence 01111 2334 4445554 455555543 355665555 444334456789
Q ss_pred EEEEecCCcC---chh-----------------------H-----HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207 428 IFLVTDGAVE---DER-----------------------Q-----ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (613)
Q Consensus 428 IillTDG~~~---~~~-----------------------~-----~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~ 476 (613)
|||+||.... ++. . .+..+.+.+.+.+ + ..||++-- ......+.
T Consensus 246 lv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~-i-~~ifavt~---~~~~~y~~ 320 (690)
T 3fcs_B 246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN-I-NLIFAVTE---NVVNLYQN 320 (690)
T ss_dssp EEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTT-C-EEEEEEEG---GGHHHHHH
T ss_pred EEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcC-C-eEEEEEeC---CchhhHHH
Confidence 9999998754 100 0 1334444444332 1 33555522 23445566
Q ss_pred HHHhcCcE-EEEc-CCCcHHHHHHHHHHHHhccce
Q 007207 477 LAMISRGY-YGAA-YDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 477 lA~~~gG~-~~~v-~~~~~l~~~l~~~~~~~~~p~ 509 (613)
|+..-.|. .-.+ .|...+.+.+...++++.+.+
T Consensus 321 l~~~i~~s~v~~l~~dSsni~~li~~~y~~i~s~v 355 (690)
T 3fcs_B 321 YSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (690)
T ss_dssp HHHHSTTCEEEEECTTCTTHHHHHHHHHHHHTTCE
T ss_pred HHhhcCCceeeeeccccHHHHHHHHHHHHhhhcce
Confidence 66554444 3332 455678888888888887654
No 38
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=97.77 E-value=0.0028 Score=72.47 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=106.0
Q ss_pred CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccc------------ccc-------
Q 007207 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM------------ELA------- 383 (613)
Q Consensus 323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~------------~~~------- 383 (613)
...|--++||||+|.+.. .++.+++++...|+.|+++.+|++|+|++..+.+.-.. ..+
T Consensus 118 ~~~pp~~vFvIDvs~~~~--~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~ 195 (768)
T 1m2o_A 118 VTVPPIFFFVVDLTSETE--NLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTE 195 (768)
T ss_dssp CCSCCEEEEEEECCSCHH--HHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHH
T ss_pred CCCCCEEEEEEECCcCHH--HHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHH
Confidence 346778999999998863 68999999999999999999999999998765431000 000
Q ss_pred --------------------------------------CHHHHHHHHHHHhhc--CC---CCCCcchHHHHHHHHHHHhc
Q 007207 384 --------------------------------------TKEAVERAHQWIGIN--FI---AGGSTNICAPLTKAVEMLTN 420 (613)
Q Consensus 384 --------------------------------------~~~~~~~a~~~i~~~--~~---~~GgT~l~~aL~~A~~~l~~ 420 (613)
....+..+++.|... .. ..+.+.++.||..|..++..
T Consensus 196 ~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 275 (768)
T 1m2o_A 196 MLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQG 275 (768)
T ss_dssp HHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHH
T ss_pred HHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhh
Confidence 012234444444320 01 13556899999999999973
Q ss_pred C-CCCccEEEEEecCCcCch---------h-------H--------------HHHHHHHHHHcCCCCCceEEEEEecCCC
Q 007207 421 S-RGSIPIIFLVTDGAVEDE---------R-------Q--------------ICDAMKSRLTNGGSICPRIYTFGIGSYC 469 (613)
Q Consensus 421 ~-~~~~~~IillTDG~~~~~---------~-------~--------------~~~~~~~~~~~~~~~~~~i~tigiG~~~ 469 (613)
. ++....|++++.|.++.+ . + ..+.+...+.+. ...+.+|.++ ...+
T Consensus 276 ~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~-gi~VDlF~~~-~~~~ 353 (768)
T 1m2o_A 276 CYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAAN-GHTVDIFAGC-YDQI 353 (768)
T ss_dssp HCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH-TCEEEEEEEC-SSCC
T ss_pred ccCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHC-CeEEEEEEcc-CCcc
Confidence 1 122346888898876411 0 0 011122222221 2334555554 3457
Q ss_pred CHHHHHHHHHhcCcEEEEcCCCc
Q 007207 470 NHYFLRMLAMISRGYYGAAYDLD 492 (613)
Q Consensus 470 ~~~~L~~lA~~~gG~~~~v~~~~ 492 (613)
+-..|..+++.|||..++..+..
T Consensus 354 dla~l~~l~~~TGG~v~~y~~f~ 376 (768)
T 1m2o_A 354 GMSEMKQLTDSTGGVLLLTDAFS 376 (768)
T ss_dssp SHHHHHHHHHHHTCCEEEESCTT
T ss_pred ChHHHhhHhhcCCceEEEcCCCc
Confidence 88999999999999988776654
No 39
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.75 E-value=0.0012 Score=70.00 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=111.2
Q ss_pred ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCccee---------
Q 007207 308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL--------- 375 (613)
Q Consensus 308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~--------- 375 (613)
-.|.+.+.+. +..|.|++||+|.|+||.. .++.+|+....+++.| ..+-|+++..|-+....
T Consensus 98 ~~f~v~~~~~-----~~ypvDLy~LmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~ 171 (472)
T 3t3p_B 98 KNFSIQVRQV-----EDYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE 171 (472)
T ss_dssp EEEEEEEECC-----SSCCEEEEEEEECSGGGHH-HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHH
T ss_pred EEEEEEeecC-----CCCCceEEEEEccCcchHH-HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhh
Confidence 3566666554 3478999999999999975 5888888777776655 45779999999875210
Q ss_pred ---------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcc----hHHHHHHHH---HHHhcCCCCccE
Q 007207 376 ---------------------FSTSMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPI 427 (613)
Q Consensus 376 ---------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~----l~~aL~~A~---~~l~~~~~~~~~ 427 (613)
..+++ .+.....++++ .....|+-+ -.+||..|+ +.+.-+.+..+.
T Consensus 172 ~l~nPc~~~~~~c~p~f~fr~~l~LT--~d~~~F~~~V~----~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rl 245 (472)
T 3t3p_B 172 ALENPCYDMKTTCLPMFGYKHVLTLT--DQVTRFNEEVK----KQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL 245 (472)
T ss_dssp HHHCTTTTTTSCCCCCCSEEEEEEEE--SCHHHHHHHHH----HCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEE
T ss_pred hhcCCCcccccCCCCCcceeEeeccC--CCHHHHHHHHh----hccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEE
Confidence 11221 24444444444 344555543 245555554 334334456789
Q ss_pred EEEEecCCcC---ch-----------------h-----------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207 428 IFLVTDGAVE---DE-----------------R-----------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM 476 (613)
Q Consensus 428 IillTDG~~~---~~-----------------~-----------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~ 476 (613)
+||+||.... |+ . .....+.+.+.+.+ -..||++- .......+.
T Consensus 246 lV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt---~~~~~~Y~~ 320 (472)
T 3t3p_B 246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN--INLIFAVT---ENVVNLYQN 320 (472)
T ss_dssp EEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTT--CEEEEEEC---GGGHHHHHH
T ss_pred EEEECCCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcC--ccEEEEEe---ccchhHHHH
Confidence 9999997642 00 0 01333444444332 13466662 224456677
Q ss_pred HHHhcCcEEE-Ec-CCCcHHHHHHHHHHHHhccce
Q 007207 477 LAMISRGYYG-AA-YDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 477 lA~~~gG~~~-~v-~~~~~l~~~l~~~~~~~~~p~ 509 (613)
|+..-.|... .+ .|...+.+.+...+.++.+.+
T Consensus 321 L~~~ip~s~vg~L~~dSsNiv~LI~~aY~~i~s~V 355 (472)
T 3t3p_B 321 YSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (472)
T ss_dssp HHHTSTTCEEEECCTTSTTHHHHHHHHHHHHTTCE
T ss_pred HHHhCCCceeeeccccchhHHHHHHHHHHHhheEE
Confidence 8776555433 33 455678888888888887755
No 40
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.54 E-value=0.0035 Score=65.96 Aligned_cols=184 Identities=13% Similarity=0.164 Sum_probs=108.7
Q ss_pred ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCccee---------
Q 007207 308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYL--------- 375 (613)
Q Consensus 308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~--------- 375 (613)
-.|.+.+.+. +..|.|++||+|.|+||.. .++.+|.....+++.|. .+-|+++..|-+....
T Consensus 109 ~~f~v~~~~~-----~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~ 182 (454)
T 3vi3_B 109 QTFTLKFKRA-----EDYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAK 182 (454)
T ss_dssp CCEEEEEECC-----SCCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTT
T ss_pred EEEEEEEecC-----CCCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHH
Confidence 3466655554 3478999999999999975 68888887777766554 5779999999875210
Q ss_pred -------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHHH---HHhcCCCCccEEE
Q 007207 376 -------------------FSTSMELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAVE---MLTNSRGSIPIIF 429 (613)
Q Consensus 376 -------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~~---~l~~~~~~~~~Ii 429 (613)
..+++ .+.. ...+.++ .....|+-+. .+||..|.- .+.-+. ..+.+|
T Consensus 183 ~~nPC~~~~~c~~~f~fr~~l~LT--~d~~---~F~~~V~-~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV 255 (454)
T 3vi3_B 183 LRNPCTSEQNCTTPFSYKNVLSLT--NKGE---VFNELVG-KQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLV 255 (454)
T ss_dssp TTCCSCSSSCCCCCCSEEEEEEEE--SCHH---HHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEE
T ss_pred hcCCCcCccCCCCCcceeeeeecC--CCHH---HHHHHHh-hccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEE
Confidence 11221 1334 4445554 4556665443 344444432 232233 678999
Q ss_pred EEecCCcC---chh---------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207 430 LVTDGAVE---DER---------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479 (613)
Q Consensus 430 llTDG~~~---~~~---------------------------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~ 479 (613)
|+||.... |+. .....+.+.+.+.+ . ..||++- . ......+.|+.
T Consensus 256 ~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~n-I-~~IFAVt--~-~~~~~Y~~L~~ 330 (454)
T 3vi3_B 256 FSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENN-I-QTIFAVT--E-EFQPVYKELKN 330 (454)
T ss_dssp EEESSCBCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTT-E-EEEEEEE--G-GGHHHHHHHHH
T ss_pred EECCCCcCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcC-C-cEEEEEc--C-ccchHHHHHHH
Confidence 99997753 100 01334444444332 1 3466552 2 23456677777
Q ss_pred hcCcEEE-Ec-CCCcHHHHHHHHHHHHhccce
Q 007207 480 ISRGYYG-AA-YDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 480 ~~gG~~~-~v-~~~~~l~~~l~~~~~~~~~p~ 509 (613)
.-.|... .+ .|...+.+.+...+.++.+.+
T Consensus 331 ~ip~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V 362 (454)
T 3vi3_B 331 LIPKSAVGTLSANSSNVIQLIIDAYNSLSSEV 362 (454)
T ss_dssp HSTTEEEEEECTTCTTHHHHHHHHHHHHHTCE
T ss_pred hCCCceeeEccccchhHHHHHHHHHHHhheEE
Confidence 6555433 22 445678888888888887655
No 41
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.53 E-value=0.00024 Score=79.60 Aligned_cols=184 Identities=14% Similarity=0.185 Sum_probs=103.6
Q ss_pred ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHH---HhCCCCCeEEEEEeCCccee---------
Q 007207 308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVAL---SKLDPGDSFNIVAFNGETYL--------- 375 (613)
Q Consensus 308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l---~~L~~~d~~~Ii~F~~~~~~--------- 375 (613)
-.|.+.+.+.. ..|.|++||+|.|+||.. .++.+|+....++ +.+..+-||++.+|.+....
T Consensus 91 ~~f~~~~~~~~-----~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~ 164 (687)
T 3k6s_B 91 AAFNVTFRRAK-----GYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDK 164 (687)
T ss_dssp EEEEEEECCCC-----CCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTT
T ss_pred eEEEEEEeccC-----CCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchh
Confidence 45666666543 367999999999999974 4666666555544 44567889999999874211
Q ss_pred --------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcc----hHHHHHHHH---HHHhcCCCCccEE
Q 007207 376 --------------------FSTSMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPII 428 (613)
Q Consensus 376 --------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~----l~~aL~~A~---~~l~~~~~~~~~I 428 (613)
..+++ .+.....++++ .....|+-+ -..||..|+ +.+.-+. ..+.|
T Consensus 165 ~~~Pc~~~~~~c~~~f~f~~~l~lt--~~~~~F~~~v~----~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rll 237 (687)
T 3k6s_B 165 LRNPCPNKEKECQPPFAFRHVLKLT--NNSNQFQTEVG----KQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLL 237 (687)
T ss_dssp TTCCCCSCCCCCCCCCSCEEEEEEE--SCSHHHHHHHH----TSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEE
T ss_pred ccCCCCCCCCCcCCcccceeecccC--CCHHHHHHHHh----hccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEE
Confidence 11222 23344444444 444555533 245555554 3443233 67899
Q ss_pred EEEecCCcC---chh----------------------H-----HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHH
Q 007207 429 FLVTDGAVE---DER----------------------Q-----ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478 (613)
Q Consensus 429 illTDG~~~---~~~----------------------~-----~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA 478 (613)
||+||.... +.. . .+..+.+.+.+.+ + ..||++- . ......+.|+
T Consensus 238 V~~TDa~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~-I-~~ifavt-~--~~~~~y~~l~ 312 (687)
T 3k6s_B 238 VFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENN-I-QPIFAVT-S--RMVKTYEKLT 312 (687)
T ss_dssp EEECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTT-C-BCCEEEC-G--GGHHHHHHHH
T ss_pred EEECCCccccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHcC-C-eEEEEEe-c--cchhhHHHHH
Confidence 999998753 100 0 0223333343332 1 3455552 2 2445566666
Q ss_pred Hhc-CcEEEEc-CCCcHHHHHHHHHHHHhccce
Q 007207 479 MIS-RGYYGAA-YDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 479 ~~~-gG~~~~v-~~~~~l~~~l~~~~~~~~~p~ 509 (613)
..- ++..-.+ .+...+.+.+...++++.+.+
T Consensus 313 ~~i~~s~v~~L~~dSsni~~li~~ay~~i~s~v 345 (687)
T 3k6s_B 313 EIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRV 345 (687)
T ss_dssp HHSSSCCEEECCTTCCSCGGGTTTHHHHHSSCC
T ss_pred hhcCCceeeeeccccHHHHHHHHHHHHhhhcee
Confidence 544 4433333 334457777777777776554
No 42
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=97.46 E-value=0.0036 Score=66.69 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=107.9
Q ss_pred ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCccee---------
Q 007207 308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL--------- 375 (613)
Q Consensus 308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~--------- 375 (613)
-.|.+.+.+. +..|.|++||+|.|+||.. .++.+|+....+++.| ..+-|+++..|-+....
T Consensus 119 ~~f~v~~~~~-----~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~ 192 (503)
T 3v4v_B 119 QQLQVRFLRA-----EGYPVDLYYLMDLSYSMKD-DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSK 192 (503)
T ss_dssp EEEEEEEECC-----SSCCEEEEEEEECSGGGHH-HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHH
T ss_pred EEEEEEEEcc-----CCCceeEEEEEecCcchhh-HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHH
Confidence 4566666554 3478999999999999974 6888888777776555 45779999999775210
Q ss_pred --------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHH---HHHhcCCCCccEE
Q 007207 376 --------------------FSTSMELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAV---EMLTNSRGSIPII 428 (613)
Q Consensus 376 --------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~---~~l~~~~~~~~~I 428 (613)
..+++. +.. +..+.++ .....|+-+. .+||..|+ +.+.=+ ...+.+
T Consensus 193 l~~PC~~~~~~c~p~f~fr~~l~LT~--d~~---~F~~~V~-~~~iSGnlD~PEggfDAlmQaavC~~~IgWR-~a~rll 265 (503)
T 3v4v_B 193 LRHPCPTRLERCQSPFSFHHVLSLTG--DAQ---AFEREVG-RQSVSGNLDSPEGGFDAILQAALCQEQIGWR-NVSRLL 265 (503)
T ss_dssp HHCCSSCSSSCCCCCCSEEEEEEEES--CSH---HHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCC-SSEEEE
T ss_pred hcCCCcCCCCCCCCCcceEEEEEecC--CHH---HHHHHHh-hcCccCCCCCCchHHHHHHHHhhcccccCCC-cceEEE
Confidence 112221 333 4444454 4555565443 45555554 333222 356899
Q ss_pred EEEecCCcCc---h-----------------h-----------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207 429 FLVTDGAVED---E-----------------R-----------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML 477 (613)
Q Consensus 429 illTDG~~~~---~-----------------~-----------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l 477 (613)
||+||....- + . .....+.+.+.+.+ . ..||++ -. ......+.|
T Consensus 266 V~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~enn-I-~~IFAV--t~-~~~~~Y~~L 340 (503)
T 3v4v_B 266 VFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAAN-I-QPIFAV--TS-AALPVYQEL 340 (503)
T ss_dssp EEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHT-E-EEEEEE--CS-SSHHHHHHH
T ss_pred EEECCCCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcC-C-eEEEEE--cc-cchhHHHHH
Confidence 9999976420 0 0 01223333333221 1 235554 22 244567778
Q ss_pred HHhcCcE-EEEc-CCCcHHHHHHHHHHHHhccce
Q 007207 478 AMISRGY-YGAA-YDLDSIEIQMQKLFTRGFSSV 509 (613)
Q Consensus 478 A~~~gG~-~~~v-~~~~~l~~~l~~~~~~~~~p~ 509 (613)
+..-.|. .-.+ .|...+.+.+...+.++.+.+
T Consensus 341 ~~~ip~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V 374 (503)
T 3v4v_B 341 SKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTV 374 (503)
T ss_dssp HTTSTTCEEEECCTTSCTHHHHHHHHHHHHHTCE
T ss_pred HHhCCCceeeEccccchhHHHHHHHHHHHhheEE
Confidence 7765444 3333 345678888888888887755
No 43
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.38 E-value=0.0076 Score=68.79 Aligned_cols=226 Identities=12% Similarity=0.159 Sum_probs=133.1
Q ss_pred CCCCCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCCCC-------CeEEEEEeCCcceeee----------------
Q 007207 322 RKVFKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLDPG-------DSFNIVAFNGETYLFS---------------- 377 (613)
Q Consensus 322 ~~~~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~~~-------d~~~Ii~F~~~~~~~~---------------- 377 (613)
..+.|--++||||+|-. ....-++.++++++..|+.|+++ .+|++|+|++..+.+.
T Consensus 173 ~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~ 252 (770)
T 3efo_B 173 KPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDV 252 (770)
T ss_dssp SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred CCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEeccc
Confidence 35567889999999853 43346889999999999999864 5899999998754311
Q ss_pred -----cc----cc--ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC-ch----
Q 007207 378 -----TS----ME--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-DE---- 439 (613)
Q Consensus 378 -----~~----~~--~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~-~~---- 439 (613)
|. .. .-....+..+++.|.... ....+|.++.||+.|+..+..... ...|++++.|.++ .+
T Consensus 253 ~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~-GGkI~~F~s~lP~t~GpG~l 331 (770)
T 3efo_B 253 GEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-PGKLFIFHSSLPTAEAPGKL 331 (770)
T ss_dssp TSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-CEEEEEEECSCCCSSSTTCC
T ss_pred ccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCC-CcEEEEEecCCCCcCCCccc
Confidence 10 00 114566777777665221 335678899999999998864222 2356666666443 10
Q ss_pred ---------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcH--HHH
Q 007207 440 ---------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDS--IEI 496 (613)
Q Consensus 440 ---------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~--l~~ 496 (613)
....+.+...+.+.+ ..+.+|.++. ..++-..|..+++.|||..++..+... -.+
T Consensus 332 ~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~-i~VDlF~~s~-~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~ 409 (770)
T 3efo_B 332 KNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHG-CSVTLFLFPS-QYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQ 409 (770)
T ss_dssp CCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTT-EEEEEEECCS-SCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred cccccccccCCcchhhhhcchHHHHHHHHHHHHHcC-eEEEEEEecC-CccChHHHHHHHhhcCceEEEecCCcchhHHH
Confidence 011223333333222 3344555432 457888999999999999888777642 233
Q ss_pred HHHHHHHH-hccceeeeE--EEEecCCCCceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 007207 497 QMQKLFTR-GFSSVLANI--AIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF 550 (613)
Q Consensus 497 ~l~~~~~~-~~~p~l~~i--~l~~~~~~~~~~v~p---------~~ip~l~~g~~~~v~g~~~~~~ 550 (613)
.|.+.+.+ +..+...+. +++...++.....+- -.++.+.....+.+.-++.++.
T Consensus 410 ~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l 475 (770)
T 3efo_B 410 QFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKL 475 (770)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCC
T ss_pred HHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCC
Confidence 44443333 333443333 344444432222211 1234455566666666666543
No 44
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.35 E-value=0.0091 Score=68.09 Aligned_cols=226 Identities=12% Similarity=0.148 Sum_probs=132.4
Q ss_pred CCCCCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCCCC-------CeEEEEEeCCcceeee----------------
Q 007207 322 RKVFKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLDPG-------DSFNIVAFNGETYLFS---------------- 377 (613)
Q Consensus 322 ~~~~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~~~-------d~~~Ii~F~~~~~~~~---------------- 377 (613)
..+.|--++||||+|-. ....-++.++++++..|+.|+++ .+|++|+|++..+.+.
T Consensus 169 ~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl 248 (766)
T 3eh2_A 169 KFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDV 248 (766)
T ss_dssp SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred CCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecCh
Confidence 34567889999999853 33335789999999999999864 6899999998754321
Q ss_pred -----cc----cc--ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC-ch----
Q 007207 378 -----TS----ME--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-DE---- 439 (613)
Q Consensus 378 -----~~----~~--~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~-~~---- 439 (613)
|. .. .-....+..+++.|.... ....+|.++.||+.|+..+..... ...|++++.|.++ .+
T Consensus 249 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~-GGkI~~F~s~lP~t~GpG~l 327 (766)
T 3eh2_A 249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAEC-AGKLFLFHTSLPIAEAPGKL 327 (766)
T ss_dssp TTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC-CEEEEEEECSCCCSSSTTCC
T ss_pred hhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCC-CcEEEEEecCCCCcCCCccc
Confidence 10 01 113567777777765221 335678899999999998865322 2356666666443 10
Q ss_pred ---------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHH--HH
Q 007207 440 ---------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSI--EI 496 (613)
Q Consensus 440 ---------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l--~~ 496 (613)
....+.+...+.+.+ ..+.+|.++. ..++-..|..+++.|||..++..+...- .+
T Consensus 328 ~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~-i~VDlF~~s~-~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~ 405 (766)
T 3eh2_A 328 KNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQG-CCVDLFLFPN-QYVDVATLSVVPQLTGGSVYKYASFQVENDQE 405 (766)
T ss_dssp CCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHT-EEEEEEECCS-SCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred ccccccccCCCcchhhhccchHHHHHHHHHHHHhCC-eEEEEEEecC-CCcChHHHHHHHhhcCceEEEeCCCcchhHHH
Confidence 011223333332222 2344555432 4578899999999999999887776431 23
Q ss_pred HHHHHHHH-hccceeeeE--EEEecCCCCceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 007207 497 QMQKLFTR-GFSSVLANI--AIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF 550 (613)
Q Consensus 497 ~l~~~~~~-~~~p~l~~i--~l~~~~~~~~~~v~p---------~~ip~l~~g~~~~v~g~~~~~~ 550 (613)
.|.+.+.+ +..+...+. +++...++.....+- -.++.+-....+.+.-++.++.
T Consensus 406 ~f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l 471 (766)
T 3eh2_A 406 RFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRL 471 (766)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCC
T ss_pred HHHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCC
Confidence 34433333 333443333 344444432222211 1234444556666666666544
No 45
>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp}
Probab=96.86 E-value=0.043 Score=54.87 Aligned_cols=111 Identities=10% Similarity=0.101 Sum_probs=79.2
Q ss_pred CCcccccccceEEEE-----EEEE-------eeeEEEEEEEEEEecccCCCceeeEEEEeecCCCc--------------
Q 007207 80 PPSLIPLQMNAVELD-----VDCY-------LDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQG-------------- 133 (613)
Q Consensus 80 ~~~~~pL~~~~v~v~-----v~~~-------~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a-------------- 133 (613)
++.++||+...|.++ |... ...+.|+|.-+|.| ++.......+.||+|...
T Consensus 10 g~~~iP~~~s~Ism~kE~i~ik~~~~~~~~~~~~~~V~v~f~F~N---p~~~~ktI~vgFP~p~~~~~~~~~~~~~~~~~ 86 (322)
T 4g2a_A 10 GSLPIPVSQPHIKMVSELIRISGKNLNEPQMNGSWHYNCNFTFKN---TLNKEVTISMAFPFPINDGNSEIALPAGQQTN 86 (322)
T ss_dssp EECCEESSCCSEEEEEEEEEEEEESTTCTTCCCEEEEEEEEEEEE---CSSSCEEEEEEEEECBCCSSSEECCCTTCCCC
T ss_pred CCeeeeeccCceeEEEEEEEEEeccccccccccceEEEEEEEEeC---CCCCcEEEEEEecCCCccCCcccccccccCCC
Confidence 345778887666543 3211 12478999999999 678899999999988332
Q ss_pred ----eEEEEEEEECCEEEEEEEeecccccccccccccccCCcccCCeeEEecCCCCCCCEEEEEEEEEEEeecc
Q 007207 134 ----SILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYR 203 (613)
Q Consensus 134 ----~V~~f~~~i~~r~i~g~v~ek~~A~~~~~~~~~~~~~ll~~n~F~~~V~ni~p~~~v~v~i~Y~q~L~~~ 203 (613)
.|.+|...||||.+..++.....-. +.+.--...|...+ ..++|+++.|+-+|.-.+...
T Consensus 87 ~~~~~i~dFkt~VNGk~V~~~~~~~a~~~---------~k~v~~~~~Y~f~~-~F~~G~~~~V~HsY~~~~s~~ 150 (322)
T 4g2a_A 87 VGQALVYDFLVTVNDKQVSAQRGNIAPDQ---------NKGLYYEDAYFWKT-TFPPLATVNIHHDYSTGATYD 150 (322)
T ss_dssp TTCBSCEEEEEEETTEEECCEEEECCCBG---------GGTBCCSEEEEEEE-EECTTCEEEEEEEEEEECEEE
T ss_pred CCCcceeeEEEEECCEEcccchhhcCccc---------cCCcccceeEEEee-ecCCCCeeEEEEEEEecCcCC
Confidence 3889999999999998876433211 11112245677666 789999999999998777665
No 46
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=35.79 E-value=1.2e+02 Score=32.50 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207 403 GSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470 (613)
Q Consensus 403 GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~ 470 (613)
|.-.-..+|..+++...+..+..-.+=|+|||.+..-.+-+..+.+.+++.+...+.||+|.=|.++.
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a~~~g~~~v~~H~~~dGrD~~ 156 (511)
T 1o98_A 89 GEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVG 156 (511)
T ss_dssp TCGGGCHHHHHHHHHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCCEEEEEEECSSSSC
T ss_pred CCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHHHHCCCCeEEEEEEccCCCCC
Confidence 33333456666666655444455677788888775433333333344444454456777777776653
No 47
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=34.17 E-value=1.3e+02 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=20.9
Q ss_pred CCCCCCEEEEEEEEEEEeeccCCeEEEEeee
Q 007207 183 QIDGGSYLSIRLRWSQKLSYRDGEFSVNVPF 213 (613)
Q Consensus 183 ni~p~~~v~v~i~Y~q~L~~~~g~~~~~lp~ 213 (613)
.|+||+.+.++.+|.+ ....|.|.+..-|
T Consensus 73 tl~pGE~~~f~~~w~~--~~~pG~Ytl~a~l 101 (120)
T 3isy_A 73 TLESGETYDFSDVWKE--VPEPGTYEVKVTF 101 (120)
T ss_dssp EECTTCEEEEEEEESS--CCCSEEEEEEEEE
T ss_pred EECCCCEEEEEEEeCC--CCCCccEEEEEEE
Confidence 4799999999988874 2336788766544
No 48
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=30.50 E-value=1.1e+02 Score=33.07 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCH----HHHHHH
Q 007207 407 ICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNH----YFLRML 477 (613)
Q Consensus 407 l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~----~~L~~l 477 (613)
=..+|..+++...+..+..-.+=|+|||.+..-.+-+..+.+.+.+.+...+.|++|.=|.++.. .+|+.|
T Consensus 106 ~n~~l~~~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~~l~~~a~~~g~~~v~vH~f~DGRD~~p~S~~~~~~~l 180 (561)
T 3igz_B 106 TGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDEL 180 (561)
T ss_dssp TSHHHHHHHHHHTSTTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCEEEEEEEECSSSSCTTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCeEEEEEeccCCCccchHHHHHHHHHHHHHcCCCeEEEEEEccCCCCCcchHHHHHHHH
Confidence 35677777777665556666888999999865443333444444445555578899888877643 355554
No 49
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=21.71 E-value=1e+02 Score=26.81 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=15.7
Q ss_pred EecCCCCHHHHHHHHHhcCcEEEE
Q 007207 464 GIGSYCNHYFLRMLAMISRGYYGA 487 (613)
Q Consensus 464 giG~~~~~~~L~~lA~~~gG~~~~ 487 (613)
|+|+. ....|+.||-.+||.++.
T Consensus 89 gfGd~-Rk~~L~DiAilTGg~vis 111 (145)
T 1srv_A 89 GFGDR-RKEMLKDIAAVTGGTVIS 111 (145)
T ss_dssp SSHHH-HHHHHHHHHHHHTCCEEC
T ss_pred Ccchh-hHHHHHHHHHHhCCEEEc
Confidence 45543 456788888888888763
Done!