Query 007208
Match_columns 613
No_of_seqs 383 out of 1716
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 20:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1.6E-49 3.5E-54 430.9 26.3 372 57-612 181-601 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 3.2E-42 6.9E-47 378.9 22.7 330 61-612 180-524 (693)
3 KOG0736 Peroxisome assembly fa 100.0 3.8E-38 8.1E-43 349.5 24.6 319 101-613 428-762 (953)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-34 2.5E-39 336.2 25.8 345 61-613 173-544 (733)
5 KOG0735 AAA+-type ATPase [Post 100.0 6.4E-33 1.4E-37 305.6 21.4 255 252-612 482-757 (952)
6 KOG0737 AAA+-type ATPase [Post 100.0 4.3E-31 9.4E-36 275.9 15.6 228 41-381 67-306 (386)
7 KOG0741 AAA+-type ATPase [Post 100.0 2.5E-30 5.5E-35 277.9 14.9 261 249-613 304-596 (744)
8 COG0464 SpoVK ATPases of the A 99.9 8.5E-26 1.9E-30 251.2 22.5 253 254-613 66-333 (494)
9 KOG0737 AAA+-type ATPase [Post 99.9 1.9E-26 4E-31 241.3 10.3 175 378-613 4-184 (386)
10 COG1222 RPT1 ATP-dependent 26S 99.9 3.1E-24 6.6E-29 223.8 17.6 234 59-429 144-392 (406)
11 KOG0730 AAA+-type ATPase [Post 99.9 1.1E-23 2.4E-28 232.9 17.5 235 58-428 426-673 (693)
12 COG1222 RPT1 ATP-dependent 26S 99.9 4.6E-24 9.9E-29 222.5 6.6 96 518-613 143-242 (406)
13 KOG0733 Nuclear AAA ATPase (VC 99.9 3.3E-22 7.2E-27 218.7 15.8 264 41-432 480-772 (802)
14 KOG0738 AAA+-type ATPase [Post 99.9 3.8E-21 8.3E-26 201.9 18.1 254 46-430 193-470 (491)
15 KOG0736 Peroxisome assembly fa 99.8 3.1E-20 6.6E-25 207.6 20.6 261 44-433 650-936 (953)
16 COG0464 SpoVK ATPases of the A 99.8 5E-20 1.1E-24 205.1 19.4 255 39-427 211-481 (494)
17 CHL00195 ycf46 Ycf46; Provisio 99.8 2.1E-19 4.7E-24 199.2 21.1 235 56-429 218-463 (489)
18 PTZ00454 26S protease regulato 99.8 4E-19 8.8E-24 192.9 19.5 235 58-429 137-386 (398)
19 KOG0740 AAA+-type ATPase [Post 99.8 8.7E-20 1.9E-24 196.8 13.7 247 59-429 146-404 (428)
20 PRK03992 proteasome-activating 99.8 6.3E-19 1.4E-23 191.1 19.9 236 59-431 124-374 (389)
21 KOG0739 AAA+-type ATPase [Post 99.8 5E-20 1.1E-24 188.0 10.4 225 44-399 112-348 (439)
22 TIGR01243 CDC48 AAA family ATP 99.8 5.3E-19 1.2E-23 205.8 19.5 260 41-430 422-711 (733)
23 CHL00195 ycf46 Ycf46; Provisio 99.8 1.6E-18 3.5E-23 192.3 21.6 242 249-612 67-315 (489)
24 KOG0734 AAA+-type ATPase conta 99.8 6.3E-19 1.4E-23 190.8 16.3 240 51-428 289-540 (752)
25 KOG0727 26S proteasome regulat 99.8 1.1E-19 2.4E-24 182.1 5.9 96 517-612 146-245 (408)
26 TIGR01241 FtsH_fam ATP-depende 99.8 3.2E-18 7E-23 190.9 17.4 237 55-429 44-295 (495)
27 KOG0738 AAA+-type ATPase [Post 99.8 3E-19 6.4E-24 187.8 7.7 105 506-612 193-301 (491)
28 KOG0729 26S proteasome regulat 99.8 3.7E-19 7.9E-24 179.5 7.3 94 519-612 170-267 (435)
29 COG1223 Predicted ATPase (AAA+ 99.8 4.7E-18 1E-22 171.1 14.8 225 61-427 116-353 (368)
30 KOG0739 AAA+-type ATPase [Post 99.8 6.3E-19 1.4E-23 180.1 8.4 99 513-612 120-222 (439)
31 PTZ00361 26 proteosome regulat 99.8 1.1E-17 2.4E-22 183.3 17.4 234 60-430 177-425 (438)
32 TIGR03689 pup_AAA proteasome A 99.7 2.6E-17 5.7E-22 182.9 17.9 260 57-427 173-476 (512)
33 KOG0726 26S proteasome regulat 99.7 8.7E-19 1.9E-23 178.6 5.0 92 521-612 180-275 (440)
34 KOG0652 26S proteasome regulat 99.7 3.2E-18 6.9E-23 172.3 7.1 107 504-612 150-261 (424)
35 KOG0731 AAA+-type ATPase conta 99.7 6.1E-17 1.3E-21 184.2 16.5 237 56-429 301-553 (774)
36 TIGR01242 26Sp45 26S proteasom 99.7 1.6E-16 3.5E-21 170.7 18.3 232 59-427 115-361 (364)
37 CHL00176 ftsH cell division pr 99.7 1.6E-16 3.4E-21 181.6 17.7 238 54-429 171-423 (638)
38 KOG0727 26S proteasome regulat 99.7 2.2E-16 4.9E-21 158.5 16.1 231 59-427 148-394 (408)
39 KOG0734 AAA+-type ATPase conta 99.7 2.3E-17 4.9E-22 178.8 7.1 98 515-613 293-394 (752)
40 KOG0731 AAA+-type ATPase conta 99.7 2.4E-17 5.2E-22 187.5 7.0 94 518-613 303-401 (774)
41 KOG0728 26S proteasome regulat 99.7 3.1E-17 6.7E-22 164.4 6.2 93 519-612 140-237 (404)
42 CHL00206 ycf2 Ycf2; Provisiona 99.7 5.9E-16 1.3E-20 187.1 16.8 238 102-428 1628-1876(2281)
43 TIGR02639 ClpA ATP-dependent C 99.7 3.7E-15 8.1E-20 173.6 22.2 240 255-590 265-514 (731)
44 PRK10733 hflB ATP-dependent me 99.6 2.2E-15 4.8E-20 173.1 17.7 240 52-429 138-392 (644)
45 KOG0728 26S proteasome regulat 99.6 2.6E-15 5.6E-20 150.8 15.7 229 62-428 143-387 (404)
46 PLN00020 ribulose bisphosphate 99.6 5E-15 1.1E-19 157.3 18.6 186 63-363 112-326 (413)
47 KOG0735 AAA+-type ATPase [Post 99.6 4.2E-15 9.1E-20 165.7 17.2 232 41-401 635-885 (952)
48 PRK11034 clpA ATP-dependent Cl 99.6 1.7E-14 3.6E-19 167.7 22.9 238 249-591 266-519 (758)
49 PTZ00454 26S protease regulato 99.6 2.3E-16 5.1E-21 171.4 6.7 94 519-612 138-235 (398)
50 KOG0726 26S proteasome regulat 99.6 5.5E-16 1.2E-20 158.3 7.7 228 62-427 181-424 (440)
51 PRK03992 proteasome-activating 99.6 1.5E-15 3.2E-20 164.9 6.8 94 519-612 124-221 (389)
52 TIGR03689 pup_AAA proteasome A 99.6 1.9E-15 4E-20 168.2 7.5 96 517-612 173-282 (512)
53 PTZ00361 26 proteosome regulat 99.6 3.6E-15 7.7E-20 163.6 7.6 94 519-612 176-273 (438)
54 KOG0651 26S proteasome regulat 99.6 2.4E-15 5.2E-20 154.9 5.7 92 521-612 127-222 (388)
55 COG1223 Predicted ATPase (AAA+ 99.6 2.1E-15 4.6E-20 152.2 5.1 89 521-613 116-208 (368)
56 KOG0652 26S proteasome regulat 99.5 4.7E-14 1E-18 142.4 13.1 250 44-431 150-414 (424)
57 KOG0740 AAA+-type ATPase [Post 99.5 7.2E-15 1.6E-19 159.0 7.6 105 506-612 134-242 (428)
58 COG0465 HflB ATP-dependent Zn 99.5 1.7E-13 3.7E-18 153.8 16.2 237 56-430 140-391 (596)
59 KOG0732 AAA+-type ATPase conta 99.5 7E-13 1.5E-17 155.0 20.0 182 58-344 257-450 (1080)
60 TIGR01242 26Sp45 26S proteasom 99.5 3E-14 6.5E-19 153.2 7.5 94 519-612 115-212 (364)
61 COG0465 HflB ATP-dependent Zn 99.5 2.6E-14 5.7E-19 160.2 5.9 92 521-613 145-240 (596)
62 KOG0732 AAA+-type ATPase conta 99.5 4.8E-14 1E-18 164.6 6.4 93 521-613 260-361 (1080)
63 TIGR01241 FtsH_fam ATP-depende 99.4 6.9E-14 1.5E-18 156.3 5.7 95 517-612 46-144 (495)
64 KOG0729 26S proteasome regulat 99.4 3.2E-12 6.9E-17 129.7 11.2 231 59-428 170-417 (435)
65 CHL00095 clpC Clp protease ATP 99.3 1.1E-10 2.3E-15 138.2 23.4 88 256-346 263-355 (821)
66 CHL00176 ftsH cell division pr 99.3 1.6E-12 3.5E-17 148.9 6.8 95 518-613 175-273 (638)
67 TIGR03345 VI_ClpV1 type VI sec 99.3 1.1E-10 2.5E-15 138.0 22.0 79 263-344 279-362 (852)
68 KOG0651 26S proteasome regulat 99.3 1.2E-11 2.5E-16 128.0 9.9 173 60-344 126-315 (388)
69 TIGR03346 chaperone_ClpB ATP-d 99.2 4.6E-10 9.9E-15 133.2 21.2 80 263-345 265-349 (852)
70 PLN00020 ribulose bisphosphate 99.2 7.3E-12 1.6E-16 133.5 5.1 88 523-612 112-204 (413)
71 PF00004 AAA: ATPase family as 99.2 2.1E-10 4.5E-15 103.6 13.5 119 107-331 1-132 (132)
72 PRK10865 protein disaggregatio 99.2 2.1E-10 4.6E-15 135.9 17.1 80 263-345 270-354 (857)
73 KOG0744 AAA+-type ATPase [Post 99.2 3.1E-10 6.8E-15 118.1 14.5 191 54-350 130-345 (423)
74 KOG0741 AAA+-type ATPase [Post 99.2 3.2E-11 7E-16 131.6 6.6 91 522-612 215-313 (744)
75 TIGR02881 spore_V_K stage V sp 99.0 6.8E-09 1.5E-13 106.8 13.9 84 264-347 105-193 (261)
76 KOG0742 AAA+-type ATPase [Post 98.9 8E-09 1.7E-13 110.3 12.5 142 249-396 427-587 (630)
77 PRK10733 hflB ATP-dependent me 98.9 1.2E-09 2.7E-14 125.9 6.0 94 518-612 144-241 (644)
78 CHL00181 cbbX CbbX; Provisiona 98.9 2.6E-08 5.6E-13 104.4 15.2 128 264-402 122-255 (287)
79 CHL00206 ycf2 Ycf2; Provisiona 98.8 1.9E-09 4.1E-14 131.9 4.5 44 547-590 1617-1660(2281)
80 CHL00181 cbbX CbbX; Provisiona 98.8 2E-09 4.3E-14 112.7 3.5 87 525-612 22-122 (287)
81 KOG0743 AAA+-type ATPase [Post 98.8 5.1E-09 1.1E-13 113.5 6.1 67 523-589 198-264 (457)
82 TIGR02880 cbbX_cfxQ probable R 98.8 3.2E-09 7E-14 110.9 4.3 85 527-612 23-121 (284)
83 TIGR02881 spore_V_K stage V sp 98.8 4.6E-09 1E-13 108.1 5.3 87 525-612 5-105 (261)
84 TIGR02880 cbbX_cfxQ probable R 98.8 1.3E-07 2.9E-12 98.9 15.1 84 264-347 121-210 (284)
85 PF05496 RuvB_N: Holliday junc 98.7 2.8E-08 6.1E-13 100.1 6.3 74 504-595 11-84 (233)
86 COG0542 clpA ATP-binding subun 98.6 6.5E-07 1.4E-11 103.8 16.4 87 255-344 253-345 (786)
87 KOG0744 AAA+-type ATPase [Post 98.6 1.7E-08 3.7E-13 105.4 2.0 95 517-611 133-241 (423)
88 PF00004 AAA: ATPase family as 98.6 4E-08 8.7E-13 88.7 3.6 50 563-612 1-54 (132)
89 COG2256 MGS1 ATPase related to 98.5 8.3E-08 1.8E-12 103.0 5.1 73 524-612 22-97 (436)
90 TIGR00390 hslU ATP-dependent p 98.5 1.4E-07 2.9E-12 103.0 6.5 86 527-612 13-105 (441)
91 TIGR00763 lon ATP-dependent pr 98.5 3.6E-06 7.8E-11 99.5 17.5 80 260-346 411-506 (775)
92 PRK00080 ruvB Holliday junctio 98.5 4.9E-06 1.1E-10 88.5 16.6 61 64-136 23-83 (328)
93 PRK05201 hslU ATP-dependent pr 98.4 1.6E-05 3.4E-10 87.1 19.5 85 41-141 3-87 (443)
94 TIGR00390 hslU ATP-dependent p 98.4 2.1E-05 4.6E-10 86.1 19.9 84 42-141 1-84 (441)
95 PRK00149 dnaA chromosomal repl 98.4 1.3E-05 2.9E-10 88.9 18.5 80 264-347 211-295 (450)
96 PRK05201 hslU ATP-dependent pr 98.4 4.1E-07 8.8E-12 99.4 5.6 86 527-612 16-108 (443)
97 PRK05342 clpX ATP-dependent pr 98.3 1.1E-05 2.4E-10 88.7 16.1 86 41-141 59-145 (412)
98 KOG0742 AAA+-type ATPase [Post 98.3 1.1E-06 2.3E-11 94.4 6.7 87 522-613 351-440 (630)
99 TIGR00382 clpX endopeptidase C 98.3 3.5E-05 7.5E-10 84.7 18.2 67 74-140 83-152 (413)
100 TIGR00635 ruvB Holliday juncti 98.3 1.4E-05 3E-10 83.7 14.1 61 64-136 2-62 (305)
101 TIGR00763 lon ATP-dependent pr 98.3 3.3E-06 7.2E-11 99.8 10.4 78 527-611 321-411 (775)
102 TIGR02928 orc1/cdc6 family rep 98.3 8.1E-05 1.8E-09 79.7 20.2 154 249-429 116-274 (365)
103 PF05673 DUF815: Protein of un 98.2 1.8E-05 4E-10 80.8 14.3 160 62-345 23-207 (249)
104 TIGR00635 ruvB Holliday juncti 98.2 9.2E-07 2E-11 92.5 4.7 58 524-589 2-59 (305)
105 PRK07940 DNA polymerase III su 98.2 1.5E-06 3.2E-11 95.0 6.4 61 524-587 3-63 (394)
106 TIGR00362 DnaA chromosomal rep 98.2 4.7E-05 1E-09 83.4 18.0 80 264-347 199-283 (405)
107 COG2255 RuvB Holliday junction 98.2 1.1E-06 2.4E-11 90.8 4.9 64 523-595 23-86 (332)
108 PHA02544 44 clamp loader, smal 98.1 3.7E-05 8E-10 80.8 14.6 75 264-346 100-174 (316)
109 KOG2028 ATPase related to the 98.1 4.9E-06 1.1E-10 88.4 7.6 79 522-613 134-215 (554)
110 PRK00411 cdc6 cell division co 98.1 0.00038 8.1E-09 75.4 22.3 94 249-346 125-221 (394)
111 PRK13342 recombination factor 98.1 4.1E-06 8.9E-11 92.0 6.0 73 523-611 9-84 (413)
112 PRK00080 ruvB Holliday junctio 98.1 3.3E-06 7.1E-11 89.8 4.9 58 524-589 23-80 (328)
113 PRK04195 replication factor C 98.1 6.5E-05 1.4E-09 84.3 15.1 64 64-140 12-75 (482)
114 PRK14962 DNA polymerase III su 98.0 7.6E-06 1.6E-10 91.5 7.4 52 523-586 11-62 (472)
115 PRK11034 clpA ATP-dependent Cl 98.0 8.9E-05 1.9E-09 87.3 16.2 93 28-141 429-525 (758)
116 smart00763 AAA_PrkA PrkA AAA d 98.0 8E-06 1.7E-10 87.9 6.5 81 525-612 49-145 (361)
117 PRK04195 replication factor C 98.0 9.6E-06 2.1E-10 90.9 7.0 60 522-590 10-69 (482)
118 TIGR03420 DnaA_homol_Hda DnaA 98.0 0.00034 7.4E-09 69.6 17.4 66 61-141 10-78 (226)
119 PRK14088 dnaA chromosomal repl 98.0 6E-05 1.3E-09 83.7 13.0 80 263-346 193-277 (440)
120 TIGR02639 ClpA ATP-dependent C 98.0 1.1E-05 2.5E-10 94.7 7.6 75 525-612 181-271 (731)
121 PRK05342 clpX ATP-dependent pr 98.0 8.1E-06 1.8E-10 89.8 5.9 82 528-609 73-163 (412)
122 KOG0989 Replication factor C, 98.0 6.4E-06 1.4E-10 86.0 4.8 51 523-586 33-83 (346)
123 KOG0743 AAA+-type ATPase [Post 97.9 0.00013 2.8E-09 79.9 13.7 202 61-406 185-417 (457)
124 TIGR02902 spore_lonB ATP-depen 97.9 0.00054 1.2E-08 78.0 19.2 129 263-427 174-330 (531)
125 PF06068 TIP49: TIP49 C-termin 97.9 1.8E-05 3.9E-10 85.0 6.6 80 523-611 21-106 (398)
126 PRK14086 dnaA chromosomal repl 97.9 7.7E-05 1.7E-09 85.3 11.9 80 264-347 377-461 (617)
127 CHL00095 clpC Clp protease ATP 97.9 2.3E-05 5.1E-10 93.2 7.6 76 524-612 177-268 (821)
128 PRK14962 DNA polymerase III su 97.9 0.0004 8.7E-09 77.8 16.5 75 264-347 117-191 (472)
129 PRK14961 DNA polymerase III su 97.8 1.6E-05 3.4E-10 86.0 5.1 52 523-586 13-64 (363)
130 COG1224 TIP49 DNA helicase TIP 97.8 1.9E-05 4.2E-10 83.9 5.5 79 524-611 37-121 (450)
131 PLN03025 replication factor C 97.8 1.5E-05 3.2E-10 84.6 4.7 49 523-584 10-58 (319)
132 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00028 6.1E-09 72.9 14.1 36 103-138 20-55 (262)
133 PRK14960 DNA polymerase III su 97.8 2.8E-05 6.1E-10 89.3 7.0 52 523-586 12-63 (702)
134 PRK13342 recombination factor 97.8 0.00024 5.3E-09 78.1 13.6 76 263-347 91-166 (413)
135 PRK14970 DNA polymerase III su 97.8 3.9E-05 8.5E-10 82.7 6.5 53 522-586 13-65 (367)
136 COG0466 Lon ATP-dependent Lon 97.8 2.3E-05 5.1E-10 89.5 4.8 59 527-592 324-382 (782)
137 PHA02544 44 clamp loader, smal 97.7 4.9E-05 1.1E-09 79.9 6.6 55 523-589 18-72 (316)
138 PRK12402 replication factor C 97.7 2.9E-05 6.2E-10 81.9 4.8 50 523-585 12-61 (337)
139 PRK14958 DNA polymerase III su 97.7 2.7E-05 5.9E-10 87.9 4.8 53 523-587 13-65 (509)
140 PRK14963 DNA polymerase III su 97.7 2.6E-05 5.6E-10 87.9 4.5 53 522-586 10-62 (504)
141 PRK14956 DNA polymerase III su 97.7 2.8E-05 6.2E-10 86.6 4.7 52 523-586 15-66 (484)
142 PRK08116 hypothetical protein; 97.7 0.00042 9E-09 72.1 12.9 90 46-144 65-157 (268)
143 PRK10787 DNA-binding ATP-depen 97.7 0.0002 4.4E-09 84.7 11.8 58 527-591 323-380 (784)
144 TIGR00382 clpX endopeptidase C 97.7 4.7E-05 1E-09 83.7 6.1 83 527-609 78-171 (413)
145 PRK14964 DNA polymerase III su 97.7 3.3E-05 7.1E-10 86.6 5.0 53 522-586 9-61 (491)
146 PRK14955 DNA polymerase III su 97.7 3.2E-05 7E-10 84.6 4.9 53 522-586 12-64 (397)
147 PRK13341 recombination factor 97.7 4.7E-05 1E-09 89.2 6.3 54 523-589 25-81 (725)
148 PRK10865 protein disaggregatio 97.7 5.9E-05 1.3E-09 90.2 7.2 75 525-612 177-267 (857)
149 PRK12422 chromosomal replicati 97.7 0.00042 9.2E-09 77.1 13.4 80 264-347 202-286 (445)
150 PF01078 Mg_chelatase: Magnesi 97.7 4.1E-05 8.9E-10 76.6 4.8 45 525-584 2-46 (206)
151 PRK06893 DNA replication initi 97.7 0.00048 1E-08 69.8 12.4 80 264-346 91-175 (229)
152 PRK14949 DNA polymerase III su 97.7 3.7E-05 8E-10 90.7 4.8 53 523-587 13-65 (944)
153 PRK06645 DNA polymerase III su 97.7 4E-05 8.8E-10 86.3 4.8 52 523-586 18-69 (507)
154 PF00308 Bac_DnaA: Bacterial d 97.7 0.00084 1.8E-08 67.8 13.8 79 264-347 97-181 (219)
155 COG2256 MGS1 ATPase related to 97.6 0.00041 8.8E-09 75.1 11.9 71 264-345 104-176 (436)
156 COG0714 MoxR-like ATPases [Gen 97.6 0.00028 6.1E-09 75.2 10.6 73 266-341 114-198 (329)
157 KOG2004 Mitochondrial ATP-depe 97.6 6.5E-05 1.4E-09 85.7 5.6 57 527-590 412-468 (906)
158 PRK12402 replication factor C 97.6 0.0015 3.3E-08 68.8 15.5 73 264-346 125-198 (337)
159 PRK08691 DNA polymerase III su 97.6 5E-05 1.1E-09 87.8 4.5 54 522-587 12-65 (709)
160 PRK13407 bchI magnesium chelat 97.6 0.0012 2.5E-08 71.0 14.3 76 264-346 128-217 (334)
161 PRK14952 DNA polymerase III su 97.6 6.3E-05 1.4E-09 86.1 4.8 52 523-586 10-61 (584)
162 COG1219 ClpX ATP-dependent pro 97.6 0.0001 2.3E-09 77.5 5.9 69 73-141 66-134 (408)
163 PRK08903 DnaA regulatory inact 97.6 0.0017 3.7E-08 65.2 14.5 65 61-139 13-80 (227)
164 PRK14969 DNA polymerase III su 97.6 6.9E-05 1.5E-09 85.0 4.8 52 523-586 13-64 (527)
165 PRK05896 DNA polymerase III su 97.5 9.7E-05 2.1E-09 84.5 5.7 52 523-586 13-64 (605)
166 PRK08084 DNA replication initi 97.5 0.0011 2.4E-08 67.5 12.9 75 266-345 99-180 (235)
167 TIGR02397 dnaX_nterm DNA polym 97.5 8.6E-05 1.9E-09 79.1 5.1 52 523-586 11-62 (355)
168 TIGR01650 PD_CobS cobaltochela 97.5 0.0012 2.6E-08 70.5 13.6 78 264-344 134-232 (327)
169 PRK14948 DNA polymerase III su 97.5 0.00016 3.5E-09 83.5 7.5 52 523-586 13-64 (620)
170 PRK12323 DNA polymerase III su 97.5 7.1E-05 1.5E-09 85.9 4.4 52 523-586 13-64 (700)
171 PRK14957 DNA polymerase III su 97.5 8.2E-05 1.8E-09 84.5 4.9 52 523-586 13-64 (546)
172 PRK06645 DNA polymerase III su 97.5 0.0028 6.2E-08 71.6 17.1 74 265-347 129-202 (507)
173 smart00382 AAA ATPases associa 97.5 9.4E-05 2E-09 65.4 4.3 28 560-587 2-29 (148)
174 TIGR00764 lon_rel lon-related 97.5 0.00013 2.9E-09 84.0 6.6 77 522-613 14-104 (608)
175 PRK14954 DNA polymerase III su 97.5 9.1E-05 2E-09 85.4 5.0 53 522-586 12-64 (620)
176 PRK05563 DNA polymerase III su 97.5 9.8E-05 2.1E-09 84.4 5.1 53 522-586 12-64 (559)
177 PRK07003 DNA polymerase III su 97.5 8.3E-05 1.8E-09 86.5 4.5 52 523-586 13-64 (830)
178 cd00009 AAA The AAA+ (ATPases 97.5 0.00015 3.3E-09 64.9 5.3 31 559-589 18-51 (151)
179 PLN03025 replication factor C 97.5 0.0014 3E-08 69.6 13.4 73 264-346 99-172 (319)
180 PRK06305 DNA polymerase III su 97.5 0.00011 2.4E-09 81.9 5.2 52 523-586 14-65 (451)
181 PRK07133 DNA polymerase III su 97.5 9.7E-05 2.1E-09 86.0 4.8 53 522-586 14-66 (725)
182 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00021 4.5E-09 85.5 7.5 76 524-612 185-276 (852)
183 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00014 3.1E-09 72.3 5.2 50 523-585 12-63 (226)
184 PRK13341 recombination factor 97.5 0.0011 2.3E-08 78.1 13.1 75 264-347 109-183 (725)
185 PRK14965 DNA polymerase III su 97.5 0.00011 2.4E-09 84.2 5.0 53 522-586 12-64 (576)
186 PRK07994 DNA polymerase III su 97.5 9.5E-05 2.1E-09 85.4 4.4 53 523-587 13-65 (647)
187 PRK14951 DNA polymerase III su 97.5 0.00011 2.3E-09 84.7 4.8 52 523-586 13-64 (618)
188 TIGR02397 dnaX_nterm DNA polym 97.4 0.0022 4.7E-08 68.4 14.3 74 264-347 117-191 (355)
189 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00022 4.7E-09 85.4 7.2 75 525-612 172-262 (852)
190 PF07728 AAA_5: AAA domain (dy 97.4 7.8E-05 1.7E-09 68.8 2.6 30 562-591 1-30 (139)
191 cd00009 AAA The AAA+ (ATPases 97.4 0.0018 3.9E-08 58.0 11.4 39 103-141 18-59 (151)
192 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0002 4.3E-09 74.1 5.8 34 561-594 22-55 (262)
193 PRK07940 DNA polymerase III su 97.4 0.0026 5.7E-08 69.8 14.8 83 250-342 102-186 (394)
194 PRK14961 DNA polymerase III su 97.4 0.0027 5.8E-08 68.8 14.8 75 264-347 119-193 (363)
195 PRK00440 rfc replication facto 97.4 0.00014 3.1E-09 76.0 4.8 49 523-584 14-62 (319)
196 PRK09111 DNA polymerase III su 97.4 0.00013 2.9E-09 83.8 4.8 53 523-587 21-73 (598)
197 PRK06647 DNA polymerase III su 97.4 0.00014 3.1E-09 83.0 4.9 53 522-586 12-64 (563)
198 PRK12377 putative replication 97.4 0.00019 4.1E-09 74.0 5.1 68 507-585 55-126 (248)
199 COG0542 clpA ATP-binding subun 97.4 0.0039 8.4E-08 73.2 16.4 205 26-349 460-709 (786)
200 PRK06620 hypothetical protein; 97.4 0.00018 3.9E-09 72.4 4.8 29 561-589 45-73 (214)
201 PRK07764 DNA polymerase III su 97.4 0.00015 3.2E-09 86.1 4.6 53 522-586 11-63 (824)
202 PRK14950 DNA polymerase III su 97.4 0.00017 3.6E-09 82.9 4.9 52 523-586 13-64 (585)
203 PF13207 AAA_17: AAA domain; P 97.4 0.0001 2.2E-09 66.1 2.5 27 563-589 2-28 (121)
204 PF05673 DUF815: Protein of un 97.4 0.00021 4.5E-09 73.2 4.9 59 522-589 23-84 (249)
205 PRK14960 DNA polymerase III su 97.3 0.0052 1.1E-07 71.1 16.5 76 263-347 117-192 (702)
206 PHA02244 ATPase-like protein 97.3 0.00022 4.7E-09 77.2 5.1 31 560-590 119-149 (383)
207 PRK08903 DnaA regulatory inact 97.3 0.00028 6E-09 70.9 5.6 51 522-584 14-66 (227)
208 COG0606 Predicted ATPase with 97.3 0.00017 3.6E-09 79.7 3.9 46 522-582 175-220 (490)
209 PRK08084 DNA replication initi 97.3 0.00031 6.7E-09 71.5 5.4 51 522-585 18-70 (235)
210 PRK13407 bchI magnesium chelat 97.3 0.00022 4.8E-09 76.5 4.6 50 522-584 4-53 (334)
211 PTZ00112 origin recognition co 97.3 0.01 2.2E-07 70.4 18.1 94 249-347 855-951 (1164)
212 PRK14953 DNA polymerase III su 97.3 0.00023 5.1E-09 80.0 4.9 52 523-586 13-64 (486)
213 PRK14959 DNA polymerase III su 97.3 0.00023 5E-09 81.8 4.8 53 522-586 12-64 (624)
214 PRK06893 DNA replication initi 97.3 0.00026 5.7E-09 71.7 4.7 23 562-584 41-63 (229)
215 PRK14087 dnaA chromosomal repl 97.3 0.0019 4.2E-08 72.0 11.9 80 264-347 206-290 (450)
216 PF05496 RuvB_N: Holliday junc 97.3 0.0027 5.8E-08 64.5 11.6 62 64-137 22-83 (233)
217 COG1220 HslU ATP-dependent pro 97.3 0.0003 6.4E-09 74.7 4.8 85 527-611 16-107 (444)
218 PRK07003 DNA polymerase III su 97.2 0.013 2.9E-07 68.6 18.4 75 264-347 119-193 (830)
219 KOG1942 DNA helicase, TBP-inte 97.2 0.00031 6.7E-09 73.3 4.5 56 526-589 38-95 (456)
220 PRK08451 DNA polymerase III su 97.2 0.00032 6.9E-09 79.5 5.0 51 523-585 11-61 (535)
221 TIGR02902 spore_lonB ATP-depen 97.2 0.00031 6.8E-09 79.8 4.9 49 522-583 61-109 (531)
222 PRK07764 DNA polymerase III su 97.2 0.0057 1.2E-07 72.9 15.5 76 263-347 119-194 (824)
223 PRK14963 DNA polymerase III su 97.2 0.0056 1.2E-07 69.3 14.8 76 263-347 115-190 (504)
224 PRK05642 DNA replication initi 97.2 0.006 1.3E-07 62.1 13.5 76 267-345 100-179 (234)
225 PRK07952 DNA replication prote 97.2 0.00041 8.8E-09 71.4 5.0 70 507-584 53-123 (244)
226 TIGR01650 PD_CobS cobaltochela 97.2 0.00019 4.1E-09 76.6 2.4 32 560-591 64-95 (327)
227 PRK08116 hypothetical protein; 97.2 0.00029 6.2E-09 73.3 3.5 76 506-589 65-146 (268)
228 PRK08939 primosomal protein Dn 97.2 0.00029 6.3E-09 74.7 3.5 72 508-584 109-180 (306)
229 PRK08691 DNA polymerase III su 97.1 0.0073 1.6E-07 70.3 14.8 74 264-347 119-193 (709)
230 TIGR02903 spore_lon_C ATP-depe 97.1 0.016 3.4E-07 67.3 17.5 46 297-347 323-368 (615)
231 PRK10787 DNA-binding ATP-depen 97.1 0.0062 1.3E-07 72.4 14.5 75 263-346 416-507 (784)
232 PRK12323 DNA polymerase III su 97.1 0.0041 9E-08 71.8 12.2 76 263-347 123-198 (700)
233 TIGR03015 pepcterm_ATPase puta 97.1 0.025 5.4E-07 57.8 16.7 152 249-430 107-267 (269)
234 TIGR02903 spore_lon_C ATP-depe 97.1 0.00054 1.2E-08 79.2 4.8 50 522-584 150-199 (615)
235 KOG0991 Replication factor C, 97.0 0.00089 1.9E-08 68.0 5.6 56 507-584 17-72 (333)
236 PRK09087 hypothetical protein; 97.0 0.0026 5.6E-08 64.6 9.0 76 267-347 90-168 (226)
237 cd00464 SK Shikimate kinase (S 97.0 0.0004 8.8E-09 64.7 2.9 28 562-589 1-28 (154)
238 PRK15455 PrkA family serine pr 97.0 0.00062 1.3E-08 77.3 4.8 58 525-589 75-133 (644)
239 TIGR02030 BchI-ChlI magnesium 97.0 0.024 5.2E-07 61.1 16.7 76 264-346 131-220 (337)
240 COG1219 ClpX ATP-dependent pro 97.0 0.00068 1.5E-08 71.5 4.7 50 561-610 98-153 (408)
241 PF01695 IstB_IS21: IstB-like 97.0 0.00036 7.8E-09 68.3 2.6 26 559-584 46-71 (178)
242 PRK14964 DNA polymerase III su 97.0 0.017 3.6E-07 65.2 15.8 75 264-347 116-190 (491)
243 PF03215 Rad17: Rad17 cell cyc 97.0 0.00067 1.5E-08 76.8 4.8 57 525-589 18-74 (519)
244 PRK05564 DNA polymerase III su 97.0 0.00076 1.7E-08 71.4 4.9 49 524-584 2-50 (313)
245 TIGR02928 orc1/cdc6 family rep 97.0 0.0011 2.5E-08 70.9 6.3 51 525-584 14-64 (365)
246 TIGR00678 holB DNA polymerase 97.0 0.0084 1.8E-07 58.4 11.8 72 263-344 95-167 (188)
247 CHL00081 chlI Mg-protoporyphyr 97.0 0.00067 1.4E-08 73.2 4.4 50 522-584 13-62 (350)
248 PRK07471 DNA polymerase III su 97.0 0.0011 2.3E-08 72.1 6.0 51 522-584 15-65 (365)
249 COG1484 DnaC DNA replication p 97.0 0.00076 1.6E-08 69.7 4.5 27 559-585 104-130 (254)
250 TIGR00602 rad24 checkpoint pro 96.9 0.00065 1.4E-08 78.6 4.2 59 523-589 81-139 (637)
251 PF13671 AAA_33: AAA domain; P 96.9 0.00037 8.1E-09 64.1 1.8 27 563-589 2-28 (143)
252 PRK08727 hypothetical protein; 96.9 0.015 3.2E-07 59.2 13.6 79 264-345 93-175 (233)
253 TIGR02442 Cob-chelat-sub cobal 96.9 0.023 4.9E-07 66.2 16.7 76 264-346 126-215 (633)
254 TIGR00362 DnaA chromosomal rep 96.9 0.0012 2.5E-08 72.4 5.8 25 560-584 136-160 (405)
255 PRK14958 DNA polymerase III su 96.9 0.02 4.4E-07 64.9 15.8 73 265-346 120-192 (509)
256 PRK06835 DNA replication prote 96.9 0.00055 1.2E-08 73.4 3.0 24 561-584 184-207 (329)
257 PRK08727 hypothetical protein; 96.9 0.0014 3.1E-08 66.6 5.9 24 561-584 42-65 (233)
258 PRK14951 DNA polymerase III su 96.9 0.0097 2.1E-07 68.9 13.2 73 266-347 126-198 (618)
259 PRK14971 DNA polymerase III su 96.9 0.00094 2E-08 77.2 5.0 53 522-586 13-65 (614)
260 PRK14948 DNA polymerase III su 96.9 0.015 3.3E-07 67.4 14.6 74 264-346 121-194 (620)
261 PF07724 AAA_2: AAA domain (Cd 96.9 0.0049 1.1E-07 60.0 9.0 36 106-141 5-44 (171)
262 PRK00149 dnaA chromosomal repl 96.9 0.0011 2.4E-08 73.8 5.0 25 560-584 148-172 (450)
263 PRK05642 DNA replication initi 96.9 0.0014 3.1E-08 66.6 5.4 24 561-584 46-69 (234)
264 PRK14959 DNA polymerase III su 96.8 0.018 4E-07 66.5 14.8 76 263-347 118-193 (624)
265 PF07726 AAA_3: ATPase family 96.8 0.00039 8.5E-09 64.7 1.1 33 563-595 2-34 (131)
266 PRK06526 transposase; Provisio 96.8 0.00069 1.5E-08 70.0 2.8 26 559-584 97-122 (254)
267 PRK00411 cdc6 cell division co 96.8 0.0024 5.1E-08 69.2 7.0 51 525-584 29-79 (394)
268 PRK14956 DNA polymerase III su 96.8 0.021 4.6E-07 64.1 14.5 75 263-346 120-194 (484)
269 COG0714 MoxR-like ATPases [Gen 96.8 0.00081 1.8E-08 71.7 3.3 37 561-597 44-80 (329)
270 cd02020 CMPK Cytidine monophos 96.8 0.0008 1.7E-08 62.0 2.9 28 563-590 2-29 (147)
271 CHL00081 chlI Mg-protoporyphyr 96.8 0.021 4.5E-07 61.9 14.0 76 264-346 144-233 (350)
272 PRK05896 DNA polymerase III su 96.8 0.015 3.2E-07 66.9 13.5 72 266-346 121-192 (605)
273 PRK00440 rfc replication facto 96.8 0.025 5.5E-07 59.1 14.2 74 264-347 102-176 (319)
274 PRK08181 transposase; Validate 96.8 0.00063 1.4E-08 70.9 2.1 25 560-584 106-130 (269)
275 PRK07994 DNA polymerase III su 96.8 0.019 4E-07 66.8 14.1 75 263-346 118-192 (647)
276 TIGR02031 BchD-ChlD magnesium 96.8 0.03 6.6E-07 64.6 15.9 78 264-346 84-175 (589)
277 PRK14957 DNA polymerase III su 96.8 0.027 5.8E-07 64.4 15.1 75 263-346 118-192 (546)
278 smart00382 AAA ATPases associa 96.7 0.017 3.8E-07 50.7 10.9 37 104-140 2-41 (148)
279 PRK06921 hypothetical protein; 96.7 0.00087 1.9E-08 69.7 2.8 25 560-584 117-141 (266)
280 PRK14970 DNA polymerase III su 96.7 0.032 7E-07 60.2 14.9 74 264-347 108-182 (367)
281 PRK14955 DNA polymerase III su 96.7 0.016 3.4E-07 63.6 12.5 52 64-131 14-65 (397)
282 PRK13531 regulatory ATPase Rav 96.7 0.007 1.5E-07 67.9 9.5 71 267-343 110-192 (498)
283 PRK14965 DNA polymerase III su 96.7 0.018 3.8E-07 66.4 13.1 73 266-347 121-193 (576)
284 PRK09112 DNA polymerase III su 96.6 0.0026 5.7E-08 68.8 5.7 53 522-586 19-71 (351)
285 PRK05563 DNA polymerase III su 96.6 0.032 6.9E-07 64.1 14.6 76 263-347 118-193 (559)
286 PRK06620 hypothetical protein; 96.6 0.016 3.4E-07 58.4 10.7 73 266-346 87-161 (214)
287 cd02021 GntK Gluconate kinase 96.6 0.0012 2.6E-08 61.7 2.5 27 563-589 2-28 (150)
288 PRK07133 DNA polymerase III su 96.6 0.03 6.4E-07 65.8 14.0 89 250-347 103-192 (725)
289 PRK04132 replication factor C 96.6 0.045 9.7E-07 65.4 15.6 73 265-346 631-703 (846)
290 COG2812 DnaX DNA polymerase II 96.6 0.0015 3.3E-08 73.6 3.3 54 522-587 12-65 (515)
291 KOG0745 Putative ATP-dependent 96.6 0.0023 4.9E-08 70.0 4.4 51 561-611 227-283 (564)
292 PRK14969 DNA polymerase III su 96.5 0.023 4.9E-07 64.8 12.5 74 264-346 119-192 (527)
293 PF00910 RNA_helicase: RNA hel 96.5 0.0013 2.9E-08 58.7 2.1 23 563-585 1-23 (107)
294 PRK06305 DNA polymerase III su 96.5 0.057 1.2E-06 60.5 15.4 75 263-346 120-194 (451)
295 PRK13946 shikimate kinase; Pro 96.5 0.0017 3.7E-08 63.4 3.0 30 560-589 10-39 (184)
296 PRK13765 ATP-dependent proteas 96.5 0.0024 5.1E-08 74.1 4.6 50 522-586 27-76 (637)
297 PRK07399 DNA polymerase III su 96.5 0.0025 5.5E-08 67.9 4.5 49 524-584 2-50 (314)
298 PRK11331 5-methylcytosine-spec 96.5 0.0028 6E-08 70.4 4.8 26 560-585 194-219 (459)
299 PRK14949 DNA polymerase III su 96.5 0.044 9.6E-07 65.5 14.9 74 264-346 119-192 (944)
300 PRK14088 dnaA chromosomal repl 96.5 0.0027 5.9E-08 70.7 4.6 25 560-584 130-154 (440)
301 PF06309 Torsin: Torsin; Inte 96.5 0.0036 7.8E-08 58.1 4.7 50 527-584 26-77 (127)
302 PRK13948 shikimate kinase; Pro 96.5 0.0021 4.5E-08 63.3 3.3 32 558-589 8-39 (182)
303 PF00158 Sigma54_activat: Sigm 96.5 0.0045 9.8E-08 60.1 5.6 36 561-596 23-61 (168)
304 PRK14953 DNA polymerase III su 96.5 0.055 1.2E-06 61.1 14.9 75 263-347 118-193 (486)
305 PHA00729 NTP-binding motif con 96.4 0.0015 3.3E-08 66.4 2.1 25 562-586 19-43 (226)
306 PRK13531 regulatory ATPase Rav 96.4 0.0028 6E-08 71.0 4.3 26 561-586 40-65 (498)
307 PRK11331 5-methylcytosine-spec 96.4 0.015 3.3E-07 64.7 9.9 28 103-130 193-220 (459)
308 PF07728 AAA_5: AAA domain (dy 96.4 0.0042 9.1E-08 57.3 4.8 35 106-140 1-35 (139)
309 TIGR02030 BchI-ChlI magnesium 96.4 0.0037 8.1E-08 67.3 4.9 48 524-584 2-49 (337)
310 KOG3347 Predicted nucleotide k 96.4 0.0024 5.2E-08 60.9 2.9 28 562-589 9-36 (176)
311 COG0470 HolB ATPase involved i 96.4 0.0039 8.5E-08 65.1 4.8 25 561-585 25-49 (325)
312 PRK12422 chromosomal replicati 96.4 0.0034 7.4E-08 70.0 4.6 25 560-584 141-165 (445)
313 PLN02200 adenylate kinase fami 96.3 0.003 6.5E-08 64.5 3.5 32 558-589 41-72 (234)
314 PRK14952 DNA polymerase III su 96.3 0.055 1.2E-06 62.4 13.9 74 265-347 119-192 (584)
315 PRK09183 transposase/IS protei 96.3 0.0023 5.1E-08 66.2 2.5 25 560-584 102-126 (259)
316 COG0593 DnaA ATPase involved i 96.3 0.08 1.7E-06 58.4 14.3 76 266-345 177-257 (408)
317 PF00308 Bac_DnaA: Bacterial d 96.3 0.0067 1.4E-07 61.2 5.6 24 561-584 35-58 (219)
318 PRK08058 DNA polymerase III su 96.2 0.0043 9.4E-08 66.4 4.4 50 524-585 3-53 (329)
319 PRK08451 DNA polymerase III su 96.2 0.31 6.7E-06 55.7 19.2 73 266-347 119-191 (535)
320 PHA02244 ATPase-like protein 96.2 0.14 2.9E-06 56.0 15.5 34 103-136 118-151 (383)
321 TIGR02442 Cob-chelat-sub cobal 96.2 0.005 1.1E-07 71.6 5.0 48 524-584 2-49 (633)
322 PRK14950 DNA polymerase III su 96.2 0.13 2.7E-06 59.6 16.2 75 263-347 119-194 (585)
323 PRK06547 hypothetical protein; 96.2 0.0036 7.7E-08 61.0 3.0 32 558-589 13-44 (172)
324 PHA02624 large T antigen; Prov 96.1 0.0064 1.4E-07 69.6 5.2 35 556-590 427-461 (647)
325 PRK08154 anaerobic benzoate ca 96.1 0.0066 1.4E-07 64.4 4.9 33 557-589 130-162 (309)
326 PRK06647 DNA polymerase III su 96.1 0.11 2.3E-06 59.8 15.0 75 263-346 118-192 (563)
327 PTZ00112 origin recognition co 96.1 0.026 5.7E-07 67.0 9.9 53 524-584 753-805 (1164)
328 PRK09087 hypothetical protein; 96.1 0.0035 7.5E-08 63.7 2.5 28 562-589 46-73 (226)
329 PRK14971 DNA polymerase III su 96.0 0.15 3.3E-06 59.2 15.8 73 266-347 123-195 (614)
330 PF13238 AAA_18: AAA domain; P 96.0 0.0036 7.8E-08 56.0 2.0 23 563-585 1-23 (129)
331 PLN02674 adenylate kinase 96.0 0.0048 1E-07 63.5 3.2 30 560-589 31-60 (244)
332 smart00350 MCM minichromosome 96.0 0.23 5.1E-06 56.4 17.0 157 264-431 300-506 (509)
333 PF07726 AAA_3: ATPase family 96.0 0.036 7.8E-07 51.8 8.6 30 106-135 1-30 (131)
334 PRK07952 DNA replication prote 96.0 0.02 4.4E-07 58.9 7.6 88 47-145 53-143 (244)
335 TIGR00678 holB DNA polymerase 96.0 0.0081 1.7E-07 58.6 4.5 29 558-586 12-40 (188)
336 PRK14954 DNA polymerase III su 96.0 0.16 3.4E-06 59.2 15.5 73 264-346 127-200 (620)
337 PF13191 AAA_16: AAA ATPase do 95.9 0.0058 1.3E-07 58.3 3.3 30 558-587 22-51 (185)
338 PF13401 AAA_22: AAA domain; P 95.9 0.0035 7.7E-08 56.6 1.5 24 561-584 5-28 (131)
339 PRK15424 propionate catabolism 95.9 0.0079 1.7E-07 68.6 4.5 61 523-594 216-287 (538)
340 TIGR01817 nifA Nif-specific re 95.8 0.0088 1.9E-07 68.0 4.7 61 523-594 193-256 (534)
341 KOG0745 Putative ATP-dependent 95.8 0.014 3E-07 64.1 5.5 37 105-141 227-263 (564)
342 PRK09111 DNA polymerase III su 95.7 0.32 6.8E-06 56.5 16.9 74 264-347 132-206 (598)
343 KOG1969 DNA replication checkp 95.7 0.0078 1.7E-07 69.5 3.6 32 561-592 327-358 (877)
344 PF13401 AAA_22: AAA domain; P 95.7 0.056 1.2E-06 48.7 8.5 50 249-303 75-124 (131)
345 PF13086 AAA_11: AAA domain; P 95.7 0.0059 1.3E-07 59.9 2.1 22 563-584 20-41 (236)
346 COG2607 Predicted ATPase (AAA+ 95.6 0.013 2.9E-07 60.0 4.5 56 522-586 56-111 (287)
347 KOG1969 DNA replication checkp 95.6 0.1 2.2E-06 60.7 11.9 37 103-139 324-361 (877)
348 TIGR00150 HI0065_YjeE ATPase, 95.6 0.0093 2E-07 55.9 3.1 30 558-587 20-49 (133)
349 PRK07471 DNA polymerase III su 95.6 0.28 6E-06 53.5 14.9 74 262-345 139-213 (365)
350 cd02019 NK Nucleoside/nucleoti 95.5 0.0084 1.8E-07 49.3 2.3 22 563-584 2-23 (69)
351 KOG1970 Checkpoint RAD17-RFC c 95.5 0.015 3.3E-07 65.4 4.9 29 561-589 111-139 (634)
352 PLN02459 probable adenylate ki 95.5 0.011 2.4E-07 61.4 3.6 28 562-589 31-58 (261)
353 PRK15429 formate hydrogenlyase 95.5 0.013 2.9E-07 68.7 4.5 61 523-594 373-436 (686)
354 TIGR02329 propionate_PrpR prop 95.4 0.015 3.2E-07 66.3 4.4 61 523-594 209-272 (526)
355 PRK09112 DNA polymerase III su 95.4 0.52 1.1E-05 51.2 16.1 84 250-343 126-211 (351)
356 TIGR01618 phage_P_loop phage n 95.4 0.0075 1.6E-07 61.2 1.8 23 560-582 12-34 (220)
357 COG2255 RuvB Holliday junction 95.4 0.21 4.5E-06 52.6 12.3 132 266-435 105-257 (332)
358 COG1474 CDC6 Cdc6-related prot 95.4 0.028 6.1E-07 61.3 6.3 51 528-587 19-69 (366)
359 PF13177 DNA_pol3_delta2: DNA 95.4 0.022 4.7E-07 54.8 4.8 44 530-585 1-44 (162)
360 PF13245 AAA_19: Part of AAA d 95.3 0.011 2.3E-07 50.1 2.3 22 563-584 13-35 (76)
361 PRK11608 pspF phage shock prot 95.3 0.017 3.6E-07 61.9 4.3 59 525-594 5-66 (326)
362 COG1855 ATPase (PilT family) [ 95.2 0.014 3.1E-07 64.3 3.3 45 522-584 243-287 (604)
363 PRK05707 DNA polymerase III su 95.2 0.2 4.3E-06 53.9 12.0 72 263-344 105-177 (328)
364 PRK11388 DNA-binding transcrip 95.2 0.019 4E-07 66.8 4.5 62 522-594 321-385 (638)
365 PRK06696 uridine kinase; Valid 95.2 0.027 5.8E-07 56.7 5.0 30 560-589 22-54 (223)
366 PRK14087 dnaA chromosomal repl 95.1 0.012 2.5E-07 65.9 2.5 25 560-584 141-165 (450)
367 PRK05541 adenylylsulfate kinas 95.1 0.013 2.9E-07 56.4 2.6 28 558-585 5-32 (176)
368 PRK14086 dnaA chromosomal repl 95.1 0.017 3.6E-07 66.6 3.6 24 561-584 315-338 (617)
369 PLN02199 shikimate kinase 95.1 0.017 3.6E-07 61.1 3.2 30 560-589 102-131 (303)
370 COG0470 HolB ATPase involved i 95.0 0.39 8.5E-06 50.1 13.5 26 106-131 26-51 (325)
371 COG1474 CDC6 Cdc6-related prot 95.0 0.45 9.7E-06 52.0 14.2 93 249-346 110-204 (366)
372 PF14532 Sigma54_activ_2: Sigm 95.0 0.014 3.1E-07 54.1 2.3 27 560-586 21-47 (138)
373 TIGR02237 recomb_radB DNA repa 95.0 0.019 4.1E-07 56.7 3.3 30 555-584 7-36 (209)
374 cd01394 radB RadB. The archaea 94.9 0.021 4.5E-07 56.9 3.4 30 555-584 14-43 (218)
375 KOG0990 Replication factor C, 94.9 0.016 3.5E-07 61.4 2.6 51 523-586 38-88 (360)
376 PF03969 AFG1_ATPase: AFG1-lik 94.8 0.034 7.4E-07 60.5 5.0 31 556-586 58-88 (362)
377 PRK05022 anaerobic nitric oxid 94.8 0.029 6.2E-07 63.6 4.5 59 525-594 186-247 (509)
378 PHA02774 E1; Provisional 94.8 0.022 4.7E-07 65.1 3.3 33 557-589 431-463 (613)
379 KOG2680 DNA helicase TIP49, TB 94.7 0.025 5.4E-07 59.6 3.3 52 559-611 65-122 (454)
380 PRK10820 DNA-binding transcrip 94.7 0.031 6.7E-07 63.6 4.4 62 522-594 200-264 (520)
381 cd02027 APSK Adenosine 5'-phos 94.7 0.023 5.1E-07 53.7 2.9 27 563-589 2-31 (149)
382 PRK12377 putative replication 94.7 0.07 1.5E-06 55.1 6.5 89 46-145 54-145 (248)
383 TIGR00368 Mg chelatase-related 94.7 0.022 4.7E-07 64.5 3.1 44 524-582 190-233 (499)
384 KOG3354 Gluconate kinase [Carb 94.6 0.021 4.6E-07 54.9 2.5 31 559-589 10-41 (191)
385 TIGR03015 pepcterm_ATPase puta 94.6 0.018 4E-07 58.7 2.2 24 562-585 45-68 (269)
386 PLN03210 Resistant to P. syrin 94.6 0.034 7.3E-07 69.1 4.8 55 523-588 181-235 (1153)
387 PRK05564 DNA polymerase III su 94.6 0.42 9.1E-06 50.6 12.4 71 263-343 92-163 (313)
388 PRK14738 gmk guanylate kinase; 94.6 0.022 4.7E-07 56.8 2.6 34 548-583 3-36 (206)
389 TIGR02974 phageshock_pspF psp 94.5 0.038 8.3E-07 59.3 4.4 35 560-594 22-59 (329)
390 COG3829 RocR Transcriptional r 94.5 0.043 9.2E-07 61.9 4.7 63 522-595 241-306 (560)
391 cd01129 PulE-GspE PulE/GspE Th 94.4 0.048 1E-06 56.7 4.7 48 523-585 57-105 (264)
392 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.025 5.4E-07 58.6 2.5 29 555-583 31-59 (259)
393 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.033 7.2E-07 56.6 3.3 29 555-583 16-44 (237)
394 smart00350 MCM minichromosome 94.4 0.051 1.1E-06 61.7 5.1 58 527-585 204-261 (509)
395 PRK09361 radB DNA repair and r 94.3 0.036 7.7E-07 55.5 3.4 30 555-584 18-47 (225)
396 COG2607 Predicted ATPase (AAA+ 94.3 0.51 1.1E-05 48.7 11.6 81 263-345 138-239 (287)
397 PF13173 AAA_14: AAA domain 94.2 0.3 6.4E-06 44.7 8.9 36 105-140 3-40 (128)
398 PF12774 AAA_6: Hydrolytic ATP 94.2 0.038 8.3E-07 56.5 3.3 36 560-595 32-67 (231)
399 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.037 8E-07 55.5 3.1 29 555-583 15-43 (229)
400 PF00437 T2SE: Type II/IV secr 94.1 0.027 5.8E-07 58.1 2.0 55 522-587 100-154 (270)
401 PF01583 APS_kinase: Adenylyls 94.1 0.061 1.3E-06 51.8 4.3 51 562-612 4-68 (156)
402 PRK00771 signal recognition pa 94.1 0.13 2.7E-06 57.5 7.4 27 558-584 93-119 (437)
403 PRK04220 2-phosphoglycerate ki 94.0 0.04 8.7E-07 58.4 3.2 31 559-589 91-121 (301)
404 COG0466 Lon ATP-dependent Lon 94.0 0.55 1.2E-05 54.8 12.3 85 249-345 407-508 (782)
405 PRK06067 flagellar accessory p 94.0 0.047 1E-06 55.1 3.5 29 555-583 20-48 (234)
406 PRK10536 hypothetical protein; 93.9 0.032 7E-07 57.9 2.3 22 562-583 76-97 (262)
407 COG1221 PspF Transcriptional r 93.9 0.05 1.1E-06 59.8 3.8 63 522-595 74-140 (403)
408 PF00931 NB-ARC: NB-ARC domain 93.9 0.069 1.5E-06 54.9 4.6 26 558-583 17-42 (287)
409 cd01123 Rad51_DMC1_radA Rad51_ 93.9 0.047 1E-06 54.8 3.3 30 555-584 14-43 (235)
410 PF13173 AAA_14: AAA domain 93.9 0.04 8.6E-07 50.5 2.5 25 561-585 3-27 (128)
411 PRK07399 DNA polymerase III su 93.8 1.5 3.3E-05 46.8 14.8 85 251-345 110-195 (314)
412 PF06745 KaiC: KaiC; InterPro 93.8 0.036 7.8E-07 55.5 2.3 35 555-589 14-52 (226)
413 PRK05707 DNA polymerase III su 93.6 0.042 9.2E-07 59.0 2.6 29 558-586 20-48 (328)
414 PRK08533 flagellar accessory p 93.6 0.054 1.2E-06 55.1 3.2 28 556-583 20-47 (230)
415 TIGR02533 type_II_gspE general 93.6 0.086 1.9E-06 59.6 5.1 50 521-585 217-267 (486)
416 TIGR00064 ftsY signal recognit 93.6 0.081 1.7E-06 55.3 4.5 27 558-584 70-96 (272)
417 cd00046 DEXDc DEAD-like helica 93.5 0.05 1.1E-06 47.9 2.5 25 561-585 1-25 (144)
418 PF12775 AAA_7: P-loop contain 93.5 0.036 7.7E-07 58.0 1.7 25 560-584 33-57 (272)
419 PRK10416 signal recognition pa 93.5 0.086 1.9E-06 56.4 4.5 26 559-584 113-138 (318)
420 KOG1051 Chaperone HSP104 and r 93.4 0.3 6.4E-06 58.6 9.3 100 107-304 594-709 (898)
421 COG0467 RAD55 RecA-superfamily 93.4 0.061 1.3E-06 55.3 3.3 35 555-589 18-55 (260)
422 PRK08099 bifunctional DNA-bind 93.4 0.054 1.2E-06 59.7 3.0 30 560-589 219-248 (399)
423 PRK04328 hypothetical protein; 93.4 0.066 1.4E-06 55.1 3.4 29 555-583 18-46 (249)
424 PF03215 Rad17: Rad17 cell cyc 93.4 0.33 7.1E-06 55.4 9.2 84 263-346 131-227 (519)
425 PRK08699 DNA polymerase III su 93.3 0.049 1.1E-06 58.4 2.5 28 558-585 19-46 (325)
426 cd01393 recA_like RecA is a b 93.3 0.071 1.5E-06 53.2 3.5 30 555-584 14-43 (226)
427 TIGR03499 FlhF flagellar biosy 93.3 0.087 1.9E-06 55.3 4.3 26 559-584 193-218 (282)
428 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.1 2.3E-06 56.4 4.9 51 527-585 62-113 (358)
429 cd01130 VirB11-like_ATPase Typ 93.3 0.05 1.1E-06 53.2 2.2 26 559-584 24-49 (186)
430 PF02367 UPF0079: Uncharacteri 93.2 0.043 9.3E-07 50.8 1.6 30 558-587 13-42 (123)
431 PRK05537 bifunctional sulfate 93.2 0.11 2.4E-06 59.8 5.3 65 503-586 354-418 (568)
432 TIGR02012 tigrfam_recA protein 93.2 0.06 1.3E-06 57.7 2.9 30 555-584 50-79 (321)
433 TIGR01526 nadR_NMN_Atrans nico 93.2 0.062 1.3E-06 57.6 3.0 29 561-589 163-191 (325)
434 cd00071 GMPK Guanosine monopho 93.2 0.061 1.3E-06 50.2 2.5 25 563-587 2-26 (137)
435 PF01637 Arch_ATPase: Archaeal 93.1 0.073 1.6E-06 52.2 3.1 25 560-584 20-44 (234)
436 PLN02165 adenylate isopentenyl 93.1 0.07 1.5E-06 57.4 3.1 29 561-589 44-72 (334)
437 PRK14722 flhF flagellar biosyn 93.0 0.12 2.6E-06 56.5 4.9 25 560-584 137-161 (374)
438 KOG0927 Predicted transporter 93.0 0.17 3.8E-06 57.1 6.0 105 264-376 239-347 (614)
439 PRK05973 replicative DNA helic 92.9 0.073 1.6E-06 54.7 3.0 35 555-589 59-96 (237)
440 COG0593 DnaA ATPase involved i 92.9 0.11 2.4E-06 57.3 4.5 29 559-587 112-140 (408)
441 PRK13764 ATPase; Provisional 92.9 0.047 1E-06 63.0 1.6 26 560-585 257-282 (602)
442 TIGR02236 recomb_radA DNA repa 92.9 0.093 2E-06 55.4 3.7 30 555-584 90-119 (310)
443 COG5271 MDN1 AAA ATPase contai 92.8 1.3 2.7E-05 56.3 13.1 296 105-588 1544-1878(4600)
444 TIGR02655 circ_KaiC circadian 92.8 0.08 1.7E-06 59.7 3.3 29 555-583 16-44 (484)
445 PRK09376 rho transcription ter 92.7 0.049 1.1E-06 59.8 1.3 25 562-586 171-195 (416)
446 COG1239 ChlI Mg-chelatase subu 92.7 4.9 0.00011 44.6 16.6 231 105-428 39-321 (423)
447 PRK08939 primosomal protein Dn 92.6 0.2 4.4E-06 53.3 5.9 92 46-146 107-201 (306)
448 PRK11823 DNA repair protein Ra 92.6 0.092 2E-06 58.7 3.4 30 555-584 75-104 (446)
449 PRK13477 bifunctional pantoate 92.6 0.08 1.7E-06 60.1 3.0 29 561-589 285-313 (512)
450 PRK12726 flagellar biosynthesi 92.6 0.12 2.5E-06 56.8 3.9 52 530-584 179-230 (407)
451 PF06414 Zeta_toxin: Zeta toxi 92.5 0.097 2.1E-06 51.7 3.1 32 558-589 13-45 (199)
452 cd00820 PEPCK_HprK Phosphoenol 92.5 0.07 1.5E-06 48.3 1.9 24 558-581 13-36 (107)
453 PRK10646 ADP-binding protein; 92.5 0.1 2.2E-06 50.2 3.1 30 558-587 26-55 (153)
454 TIGR02688 conserved hypothetic 92.5 0.068 1.5E-06 59.2 2.1 24 560-583 209-232 (449)
455 cd01918 HprK_C HprK/P, the bif 92.5 0.08 1.7E-06 50.6 2.3 29 560-589 14-42 (149)
456 PRK12337 2-phosphoglycerate ki 92.4 0.09 2E-06 58.8 3.0 31 559-589 254-284 (475)
457 TIGR03880 KaiC_arch_3 KaiC dom 92.4 0.11 2.4E-06 52.1 3.3 29 555-583 11-39 (224)
458 PF13207 AAA_17: AAA domain; P 92.4 0.11 2.4E-06 46.3 3.0 32 106-137 1-32 (121)
459 PRK06964 DNA polymerase III su 92.3 0.087 1.9E-06 57.0 2.7 29 558-586 19-47 (342)
460 PRK08699 DNA polymerase III su 92.3 2.2 4.7E-05 45.9 13.3 70 263-342 112-182 (325)
461 TIGR00376 DNA helicase, putati 92.3 0.074 1.6E-06 62.1 2.2 23 562-584 175-197 (637)
462 PRK11889 flhF flagellar biosyn 92.3 0.15 3.1E-06 56.3 4.2 49 532-584 217-265 (436)
463 COG3842 PotA ABC-type spermidi 92.2 0.072 1.6E-06 57.7 1.9 21 563-583 34-54 (352)
464 cd00983 recA RecA is a bacter 92.2 0.099 2.1E-06 56.1 2.9 30 555-584 50-79 (325)
465 PF02562 PhoH: PhoH-like prote 92.1 0.089 1.9E-06 52.9 2.3 23 562-584 21-43 (205)
466 PRK12724 flagellar biosynthesi 92.1 0.2 4.3E-06 55.6 5.2 25 560-584 223-247 (432)
467 PRK08058 DNA polymerase III su 92.1 1.3 2.8E-05 47.6 11.2 71 263-342 109-179 (329)
468 PRK12723 flagellar biosynthesi 92.1 0.15 3.2E-06 56.2 4.1 25 560-584 174-198 (388)
469 COG2204 AtoC Response regulato 92.1 0.16 3.5E-06 56.9 4.4 59 525-594 140-201 (464)
470 PRK08769 DNA polymerase III su 92.0 0.18 3.8E-06 54.1 4.5 28 558-585 24-51 (319)
471 TIGR01420 pilT_fam pilus retra 92.0 0.097 2.1E-06 56.4 2.5 24 562-585 124-147 (343)
472 PF10662 PduV-EutP: Ethanolami 92.0 0.087 1.9E-06 50.1 1.9 24 561-584 2-25 (143)
473 PRK04301 radA DNA repair and r 92.0 0.14 3E-06 54.5 3.6 30 555-584 97-126 (317)
474 PRK04132 replication factor C 91.9 0.13 2.8E-06 61.6 3.7 41 523-576 16-56 (846)
475 cd01128 rho_factor Transcripti 91.9 0.11 2.3E-06 53.8 2.6 27 560-586 16-42 (249)
476 PRK12269 bifunctional cytidyla 91.8 0.1 2.2E-06 62.7 2.7 28 562-589 36-63 (863)
477 cd00984 DnaB_C DnaB helicase C 91.8 0.12 2.6E-06 52.1 2.8 34 556-589 9-46 (242)
478 PF13604 AAA_30: AAA domain; P 91.7 0.12 2.6E-06 51.2 2.6 24 561-584 19-42 (196)
479 TIGR02782 TrbB_P P-type conjug 91.6 0.21 4.5E-06 53.0 4.5 25 560-584 132-156 (299)
480 TIGR02974 phageshock_pspF psp 91.6 2.6 5.7E-05 45.3 12.9 44 98-141 16-62 (329)
481 PF08477 Miro: Miro-like prote 91.6 0.1 2.2E-06 46.2 1.8 24 563-586 2-25 (119)
482 TIGR01425 SRP54_euk signal rec 91.6 0.41 8.9E-06 53.3 6.9 31 559-589 99-132 (429)
483 PLN02840 tRNA dimethylallyltra 91.6 0.12 2.6E-06 57.3 2.7 28 562-589 23-50 (421)
484 COG3839 MalK ABC-type sugar tr 91.5 0.099 2.1E-06 56.3 1.9 22 562-583 31-52 (338)
485 PRK07667 uridine kinase; Provi 91.5 0.11 2.3E-06 51.3 2.0 24 562-585 19-42 (193)
486 TIGR02238 recomb_DMC1 meiotic 91.4 0.17 3.7E-06 54.0 3.6 30 555-584 91-120 (313)
487 PF04851 ResIII: Type III rest 91.4 0.18 3.8E-06 47.6 3.3 30 560-589 25-54 (184)
488 PTZ00202 tuzin; Provisional 91.4 0.41 9E-06 53.5 6.5 53 527-589 263-315 (550)
489 PRK09862 putative ATP-dependen 91.3 0.15 3.2E-06 57.9 3.2 46 524-584 189-234 (506)
490 PRK14974 cell division protein 91.3 0.21 4.6E-06 53.9 4.2 25 560-584 140-164 (336)
491 TIGR00455 apsK adenylylsulfate 91.2 0.15 3.2E-06 49.5 2.7 26 559-584 17-42 (184)
492 PRK05703 flhF flagellar biosyn 91.2 0.2 4.4E-06 55.6 4.1 25 560-584 221-245 (424)
493 PRK13833 conjugal transfer pro 91.2 0.24 5.3E-06 53.1 4.5 25 560-584 144-168 (323)
494 PF00005 ABC_tran: ABC transpo 91.2 0.089 1.9E-06 48.0 1.1 27 558-584 9-35 (137)
495 PLN03187 meiotic recombination 91.2 0.17 3.7E-06 54.8 3.3 30 555-584 121-150 (344)
496 PRK10867 signal recognition pa 91.1 0.21 4.6E-06 55.7 4.1 27 558-584 98-124 (433)
497 PRK05022 anaerobic nitric oxid 91.1 2.1 4.6E-05 48.6 12.3 43 99-141 205-250 (509)
498 PRK03846 adenylylsulfate kinas 91.1 0.15 3.2E-06 50.4 2.5 26 559-584 23-48 (198)
499 COG3604 FhlA Transcriptional r 91.0 0.35 7.6E-06 54.3 5.6 67 518-595 215-284 (550)
500 PRK06871 DNA polymerase III su 91.0 0.27 5.9E-06 52.8 4.7 29 558-586 22-50 (325)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-49 Score=430.87 Aligned_cols=372 Identities=22% Similarity=0.308 Sum_probs=270.5
Q ss_pred CCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 57 DGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 57 ~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
...+.+|+|.+|++. +.|-..|++-+. |++||+++.|+-- -.+++|||+||++|++++||.|+|.|+|++|+-+.
T Consensus 181 ~~~~snv~f~diGG~--d~~~~el~~li~-~i~~Pe~~~~lGv--~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGL--DKTLAELCELII-HIKHPEVFSSLGV--RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred CCCCCCcchhhccCh--HHHHHHHHHHHH-HhcCchhHhhcCC--CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence 456679999999999 999999999876 7999998766643 35678999999999999999999999999999998
Q ss_pred cccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccC
Q 007208 137 VTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNA 216 (613)
Q Consensus 137 ~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (613)
+..+-.++ -|
T Consensus 256 ApeivSGv----------------------------SG------------------------------------------ 265 (802)
T KOG0733|consen 256 APEIVSGV----------------------------SG------------------------------------------ 265 (802)
T ss_pred chhhhccc----------------------------Cc------------------------------------------
Confidence 87764111 11
Q ss_pred ccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHH
Q 007208 217 SASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQ 288 (613)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~ 288 (613)
+.| +.|.|||.++....||||||||||.+-+++ .|++++|.
T Consensus 266 ---------------------------ESE----kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLl 314 (802)
T KOG0733|consen 266 ---------------------------ESE----KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLL 314 (802)
T ss_pred ---------------------------ccH----HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHH
Confidence 112 345567778888899999999999987775 46999999
Q ss_pred HHHHhhc------CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 007208 289 KMMKKLL------ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNH 360 (613)
Q Consensus 289 ~~l~~l~------g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~ 360 (613)
..||.++ .+|||||. +++++.+|.+++| +|+++|.|++|++.+|.+||+.++.. + ......++.+
T Consensus 315 t~mD~l~~~~~~g~~VlVIgA-----TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~-l-rl~g~~d~~q 387 (802)
T KOG0733|consen 315 TSMDELSNEKTKGDPVLVIGA-----TNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG-L-RLSGDFDFKQ 387 (802)
T ss_pred HhhhcccccccCCCCeEEEec-----CCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh-C-CCCCCcCHHH
Confidence 9999875 57999996 8899999999999 99999999999999999999988643 1 1122344445
Q ss_pred HHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCC-----CcccCC--------Cc--eeechh-----
Q 007208 361 IMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNE-----DTDYRN--------GK--LIISSK----- 420 (613)
Q Consensus 361 I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~-----~~~~~~--------~~--l~is~~----- 420 (613)
|+ ..++|+.++||.++|....+ -|+.+++.... .|...+ .. +.+++.
T Consensus 388 lA--~lTPGfVGADL~AL~~~Aa~-----------vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~ 454 (802)
T KOG0733|consen 388 LA--KLTPGFVGADLMALCREAAF-----------VAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPL 454 (802)
T ss_pred HH--hcCCCccchhHHHHHHHHHH-----------HHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccc
Confidence 54 35677777777776665322 12333333111 111000 01 111100
Q ss_pred hHHhhh--hhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhcCCCCCCCCCCcccccCC
Q 007208 421 SLSHGL--SIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAAAPNKDGDSSVPAAAKA 498 (613)
Q Consensus 421 sl~~al--~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 498 (613)
+++.-+ .+.|..+..+ + . ...
T Consensus 455 ~ld~v~~~~i~~~~d~~S-------------~---------------------------------E-----------~~~ 477 (802)
T KOG0733|consen 455 ELDRVVQDAILNNPDPLS-------------K---------------------------------E-----------LLE 477 (802)
T ss_pred cHHHHHHHHHHhCCCCcC-------------h---------------------------------H-----------Hhc
Confidence 111111 0111100000 0 0 000
Q ss_pred CCCCCCchHHhhh---cCCCc---cCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCC
Q 007208 499 PEVPPDNEFEKRI---RPEVI---PSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLG 572 (613)
Q Consensus 499 ~~~~~~~e~e~~~---~~~ii---~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtG 572 (613)
.-....++|++.+ .+... -...|+|+|+||||+++++.+|...|.+|.+||++|+..|+.+|.||||+||||||
T Consensus 478 ~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCG 557 (802)
T KOG0733|consen 478 GLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCG 557 (802)
T ss_pred cceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCcc
Confidence 1113345666533 11111 12457999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhHHhhCCceeeccCCC-----cchHHHHHHHHHHHHhh
Q 007208 573 KQCWPRPLPKRLGQASLMSPCLP-----SLPNGLVRMRRMFELYS 612 (613)
Q Consensus 573 KT~lAkAiA~e~g~~fi~~v~~~-----~lge~e~~Ir~IF~~A~ 612 (613)
||+||+|+|+|+|++|| .+.|| |+|++|+.||++|++|+
T Consensus 558 KTLlAKAVANEag~NFi-sVKGPELlNkYVGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 558 KTLLAKAVANEAGANFI-SVKGPELLNKYVGESERAVRQVFQRAR 601 (802)
T ss_pred HHHHHHHHhhhccCceE-eecCHHHHHHHhhhHHHHHHHHHHHhh
Confidence 99999999999999999 77775 78999999999999996
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-42 Score=378.86 Aligned_cols=330 Identities=22% Similarity=0.352 Sum_probs=258.5
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
..++ +.+... ...-..+.+.+..+|+++..++... -...+++||+||+++++++|++|.|++.+|.|+.++...+
T Consensus 180 ~~~~-~~~gg~--~~~~~~i~e~v~~pl~~~~~~~s~g--~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~pel 254 (693)
T KOG0730|consen 180 PEVG-DDIGGL--KRQLSVIRELVELPLRHPALFKSIG--IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPEL 254 (693)
T ss_pred cccc-cccchh--HHHHHHHHHHHHhhhcchhhhhhcC--CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHH
Confidence 3445 555555 5666788899999999998755443 3677889999999999999999999999999999999877
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
..++ .|++-
T Consensus 255 i~k~---~gEte-------------------------------------------------------------------- 263 (693)
T KOG0730|consen 255 ISKF---PGETE-------------------------------------------------------------------- 263 (693)
T ss_pred HHhc---ccchH--------------------------------------------------------------------
Confidence 5333 33321
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCC-CEEEEEccchhhhhhh-------hHHHHHHHHHHH
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTS-PIVVYLRDVDKLIFKS-------QRTYNLFQKMMK 292 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~-P~IL~idDiD~~l~~s-------~r~~~~l~~~l~ 292 (613)
..|.+.|.++.+++ |+||||||+|.+.+++ .|....+.++++
T Consensus 264 ------------------------------~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~d 313 (693)
T KOG0730|consen 264 ------------------------------SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLD 313 (693)
T ss_pred ------------------------------HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHh
Confidence 11223444677778 9999999999966543 578899999999
Q ss_pred hhc--CcEEEEeeeeccCCCCccccchHhhc-cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC
Q 007208 293 KLL--ASVLILGSRIVDLSNDQREVDGRVTA-LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSAND 369 (613)
Q Consensus 293 ~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~-lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~d 369 (613)
.+. +.|+|+++ +++++.+|++++| +|+++|+|..|+..+|++|++.+.+. |+ .. .+
T Consensus 314 g~~~~~~vivl~a-----tnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~-~~---~~------------~~ 372 (693)
T KOG0730|consen 314 GLKPDAKVIVLAA-----TNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKK-MN---LL------------SD 372 (693)
T ss_pred hCcCcCcEEEEEe-----cCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHh-cC---Cc------------ch
Confidence 888 67999986 7788999999998 99999999999999999999987532 11 11 12
Q ss_pred CCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcc
Q 007208 370 LDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKS 449 (613)
Q Consensus 370 l~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~ 449 (613)
.+..+++..|++ |+++|+..++..|.-.++++ ++++|..|+.-.+.
T Consensus 373 ~~l~~iA~~thG---yvGaDL~~l~~ea~~~~~r~-------------~~~~~~~A~~~i~p------------------ 418 (693)
T KOG0730|consen 373 VDLEDIAVSTHG---YVGADLAALCREASLQATRR-------------TLEIFQEALMGIRP------------------ 418 (693)
T ss_pred hhHHHHHHHccc---hhHHHHHHHHHHHHHHHhhh-------------hHHHHHHHHhcCCc------------------
Confidence 344455555555 77777777777777666653 55777777751110
Q ss_pred cCCCcccCCCCCCCCCcccCCCCCchhhhhhcCCCCCCCCCCcccccCCCCCCCCchHHhhhcCCCccCCCCcccccccc
Q 007208 450 NEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAAAPNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIG 529 (613)
Q Consensus 450 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIg 529 (613)
..+ ..++ .+-++++|+|||
T Consensus 419 -----------------------------------------------------------sa~-Re~~-ve~p~v~W~dIG 437 (693)
T KOG0730|consen 419 -----------------------------------------------------------SAL-REIL-VEMPNVSWDDIG 437 (693)
T ss_pred -----------------------------------------------------------hhh-hhee-ccCCCCChhhcc
Confidence 000 1111 344689999999
Q ss_pred ccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec----cCCCcchHHHHHHH
Q 007208 530 ALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS----PCLPSLPNGLVRMR 605 (613)
Q Consensus 530 Gl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~----v~~~~lge~e~~Ir 605 (613)
|++++|++|++.|+||++||+.|.++|++||+|||||||||||||++|+|+|++++++|+.. +.++|+|++|++||
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir 517 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIR 517 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999943 34568999999999
Q ss_pred HHHHHhh
Q 007208 606 RMFELYS 612 (613)
Q Consensus 606 ~IF~~A~ 612 (613)
++|++|+
T Consensus 518 ~iF~kAR 524 (693)
T KOG0730|consen 518 EVFRKAR 524 (693)
T ss_pred HHHHHHh
Confidence 9999996
No 3
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-38 Score=349.48 Aligned_cols=319 Identities=21% Similarity=0.376 Sum_probs=240.0
Q ss_pred CCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccc
Q 007208 101 SPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILS 180 (613)
Q Consensus 101 ~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~ 180 (613)
.....-+||+||+.+++..+|+|-|+++|..|+.+|.+.|... .+ +.+
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~------s~--------~~~------------------ 475 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE------SA--------SHT------------------ 475 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc------cc--------chh------------------
Confidence 4566779999999999999999999999999999999998600 00 000
Q ss_pred cccccccccccCCCCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhh
Q 007208 181 QKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYV 260 (613)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~ 260 (613)
| -.+-.++..+
T Consensus 476 -----------------------------------------------------------------e----tkl~~~f~~a 486 (953)
T KOG0736|consen 476 -----------------------------------------------------------------E----TKLQAIFSRA 486 (953)
T ss_pred -----------------------------------------------------------------H----HHHHHHHHHH
Confidence 0 1122345567
Q ss_pred hcCCCEEEEEccchhhhhhh-----hHHHHHHHHHHH----hhc-CcEEEEeeeeccCCCCccccchHhhccCCceEEeC
Q 007208 261 SKTSPIVVYLRDVDKLIFKS-----QRTYNLFQKMMK----KLL-ASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIR 330 (613)
Q Consensus 261 s~~~P~IL~idDiD~~l~~s-----~r~~~~l~~~l~----~l~-g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~ 330 (613)
..++|+||||.++|-+...+ -|..+.++.++. +.+ .+++++|+ .+...+++..+..+|.++|+++
T Consensus 487 ~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t-----~~s~~~lp~~i~~~f~~ei~~~ 561 (953)
T KOG0736|consen 487 RRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT-----TSSIEDLPADIQSLFLHEIEVP 561 (953)
T ss_pred hhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEe-----ccccccCCHHHHHhhhhhccCC
Confidence 77899999999999965332 245555555554 223 45888886 5556889999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHH-HhhhhcCCCcc
Q 007208 331 PPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAV-SYHLMNNEDTD 409 (613)
Q Consensus 331 ~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~-s~~l~~~~~~~ 409 (613)
.|+++||++||++++.. +....+.|..+. +..+.++...||..+... . ...+...|..+- .-.+....+-+
T Consensus 562 ~lse~qRl~iLq~y~~~--~~~n~~v~~k~~--a~~t~gfs~~~L~~l~~~---~-s~~~~~~i~~~~l~g~~~~~~~~~ 633 (953)
T KOG0736|consen 562 ALSEEQRLEILQWYLNH--LPLNQDVNLKQL--ARKTSGFSFGDLEALVAH---S-SLAAKTRIKNKGLAGGLQEEDEGE 633 (953)
T ss_pred CCCHHHHHHHHHHHHhc--cccchHHHHHHH--HHhcCCCCHHHHHHHhcC---c-hHHHHHHHHhhcccccchhccccc
Confidence 99999999999999865 223333344444 457788888888887777 2 234444444443 11123333333
Q ss_pred cCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhcCCCCCCCC
Q 007208 410 YRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAAAPNKDGD 489 (613)
Q Consensus 410 ~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 489 (613)
+......++.+||..+++.+|.
T Consensus 634 ~~~~~~~l~~edf~kals~~~~---------------------------------------------------------- 655 (953)
T KOG0736|consen 634 LCAAGFLLTEEDFDKALSRLQK---------------------------------------------------------- 655 (953)
T ss_pred cccccceecHHHHHHHHHHHHH----------------------------------------------------------
Confidence 4444467999999999986652
Q ss_pred CCcccccCCCCCCCCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCC
Q 007208 490 SSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPP 569 (613)
Q Consensus 490 ~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPP 569 (613)
+|...+.+ |.-|+|+|+||||++++|.+|.+.|.+||+||++|.. |++++.||||||||
T Consensus 656 ----------------~fs~aiGA----PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPP 714 (953)
T KOG0736|consen 656 ----------------EFSDAIGA----PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPP 714 (953)
T ss_pred ----------------hhhhhcCC----CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCC
Confidence 33333333 3336999999999999999999999999999999985 67889999999999
Q ss_pred CCCchhhhhhhHHhhCCceeeccCCC-----cchHHHHHHHHHHHHhhC
Q 007208 570 GLGKQCWPRPLPKRLGQASLMSPCLP-----SLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 570 GtGKT~lAkAiA~e~g~~fi~~v~~~-----~lge~e~~Ir~IF~~A~r 613 (613)
|||||++|||+|+|+.++|+ +++|| |+|++|+|||++|++|+.
T Consensus 715 GTGKTLlAKAVATEcsL~Fl-SVKGPELLNMYVGqSE~NVR~VFerAR~ 762 (953)
T KOG0736|consen 715 GTGKTLLAKAVATECSLNFL-SVKGPELLNMYVGQSEENVREVFERARS 762 (953)
T ss_pred CCchHHHHHHHHhhceeeEE-eecCHHHHHHHhcchHHHHHHHHHHhhc
Confidence 99999999999999999999 78886 789999999999999973
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-34 Score=336.24 Aligned_cols=345 Identities=22% Similarity=0.373 Sum_probs=260.7
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
-+++|+++..+ +..+..|.+.+..+++++++.+... ....+.|||+||+++++++||||+|++++++++.++..++
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i 248 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEI 248 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHH
Confidence 57999999999 9999999999999999998744321 2455779999999999999999999999999999988776
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
..++ +|
T Consensus 249 ~~~~---~g----------------------------------------------------------------------- 254 (733)
T TIGR01243 249 MSKY---YG----------------------------------------------------------------------- 254 (733)
T ss_pred hccc---cc-----------------------------------------------------------------------
Confidence 4111 00
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHHHH
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKMMK 292 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~l~ 292 (613)
.....++.+|+ .+...+|+||||||+|.+...+ .++...|..+++
T Consensus 255 ------------------------~~~~~l~~lf~---~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld 307 (733)
T TIGR01243 255 ------------------------ESEERLREIFK---EAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMD 307 (733)
T ss_pred ------------------------HHHHHHHHHHH---HHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhh
Confidence 00112344444 4455699999999999976543 346667777777
Q ss_pred hhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 007208 293 KLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSAN 368 (613)
Q Consensus 293 ~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~ 368 (613)
.+. +.|+|+|+ ++.++.++.++.+ +|..+|+|++|+.++|.+||+.+... +....
T Consensus 308 ~l~~~~~vivI~a-----tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~----------------~~l~~ 366 (733)
T TIGR01243 308 GLKGRGRVIVIGA-----TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN----------------MPLAE 366 (733)
T ss_pred ccccCCCEEEEee-----cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC----------------CCCcc
Confidence 765 46888885 5667888999987 89999999999999999999965421 11123
Q ss_pred CCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCC-----C------cccCCCceeechhhHHhhhhhhhccccCCc
Q 007208 369 DLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNE-----D------TDYRNGKLIISSKSLSHGLSIFQEGKASGK 437 (613)
Q Consensus 369 dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~-----~------~~~~~~~l~is~~sl~~al~~~q~~~~~~~ 437 (613)
++++..++..+.+ +++.++..++..|...++.+.. + +......+.++.++|..|+...+.
T Consensus 367 d~~l~~la~~t~G---~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~p------ 437 (733)
T TIGR01243 367 DVDLDKLAEVTHG---FVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEP------ 437 (733)
T ss_pred ccCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccc------
Confidence 4556677777777 8888888888877666553211 0 000123456777888887752210
Q ss_pred chhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhcCCCCCCCCCCcccccCCCCCCCCchHHhhhcCCCcc
Q 007208 438 DTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAAAPNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIP 517 (613)
Q Consensus 438 d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~ 517 (613)
. .. ..+ .
T Consensus 438 -----------------------------------------------------------s-----~~--------~~~-~ 444 (733)
T TIGR01243 438 -----------------------------------------------------------S-----AI--------REV-L 444 (733)
T ss_pred -----------------------------------------------------------c-----cc--------chh-h
Confidence 0 00 000 1
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec----cC
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS----PC 593 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~----v~ 593 (613)
.+.+.++|+||||++++|+.|++.+.+|+++|++|...++.+++|+|||||||||||++|+++|++++++|+.. +.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 12347899999999999999999999999999999999999999999999999999999999999999999932 23
Q ss_pred CCcchHHHHHHHHHHHHhhC
Q 007208 594 LPSLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 594 ~~~lge~e~~Ir~IF~~A~r 613 (613)
+.|+|+++++||++|+.|++
T Consensus 525 ~~~vGese~~i~~~f~~A~~ 544 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQ 544 (733)
T ss_pred hcccCcHHHHHHHHHHHHHh
Confidence 46889999999999999863
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-33 Score=305.60 Aligned_cols=255 Identities=20% Similarity=0.310 Sum_probs=192.4
Q ss_pred HHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHHHHHHHhh---cCcEEEEeeeeccCCCCccccch
Q 007208 252 SIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLFQKMMKKL---LASVLILGSRIVDLSNDQREVDG 317 (613)
Q Consensus 252 aL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l~~~l~~l---~g~VlIiGS~~~ds~~~~~~v~~ 317 (613)
.|..|+.++-|++|+||++||+|.++..+ +|+...+..++..+ ...|.+|++ .+.-..+++
T Consensus 482 ~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat-----~qe~qtl~~ 556 (952)
T KOG0735|consen 482 FLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIAT-----GQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEe-----chhhhhcCh
Confidence 45567888999999999999999988743 34444444444433 344677775 222333444
Q ss_pred Hhh--ccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHH
Q 007208 318 RVT--ALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVV 395 (613)
Q Consensus 318 ~l~--~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~ 395 (613)
.+. ++|++++.++.|+.++|.+||+..+.+-.. +...+||.-++....+|...|++-.|.
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~------------------~~~~~dLd~ls~~TEGy~~~DL~ifVe 618 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS------------------DITMDDLDFLSVKTEGYLATDLVIFVE 618 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh------------------hhhhHHHHHHHHhcCCccchhHHHHHH
Confidence 443 299999999999999999999977643111 111245555666666699999999999
Q ss_pred HHHHhhhhcCCCcccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCch
Q 007208 396 SAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTS 475 (613)
Q Consensus 396 ~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 475 (613)
+|+++++... +-.+.+ .++.++|+.+|+-|..
T Consensus 619 Rai~~a~ler---is~~~k-lltke~f~ksL~~F~P-------------------------------------------- 650 (952)
T KOG0735|consen 619 RAIHEAFLER---ISNGPK-LLTKELFEKSLKDFVP-------------------------------------------- 650 (952)
T ss_pred HHHHHHHHHH---hccCcc-cchHHHHHHHHHhcCh--------------------------------------------
Confidence 9999987311 112335 7999999999985521
Q ss_pred hhhhhcCCCCCCCCCCcccccCCCCCCCCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcC
Q 007208 476 EAEKSAAAPNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGG 555 (613)
Q Consensus 476 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~ 555 (613)
.-..++--....++.|+||||+.++|+.+++.++||-+||.+|...
T Consensus 651 ----------------------------------~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~ 696 (952)
T KOG0735|consen 651 ----------------------------------LALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANC 696 (952)
T ss_pred ----------------------------------HHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhC
Confidence 0011111122234789999999999999999999999999999999
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC-----cchHHHHHHHHHHHHhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP-----SLPNGLVRMRRMFELYS 612 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~-----~lge~e~~Ir~IF~~A~ 612 (613)
+++.+.|||||||||||||+||.|+|..+++.|| +++|| |+|.+|++||.+|++|+
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fi-svKGPElL~KyIGaSEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFI-SVKGPELLSKYIGASEQNVRDLFERAQ 757 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEE-EecCHHHHHHHhcccHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999 78887 56788999999999986
No 6
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.3e-31 Score=275.92 Aligned_cols=228 Identities=20% Similarity=0.345 Sum_probs=188.2
Q ss_pred CCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHH
Q 007208 41 AVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQML 120 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~L 120 (613)
.++.+++|..+...||.|++|+|+|+++... |.+++.|.+.+..+|++|+++++. .|..+++.|||+||++++++||
T Consensus 67 ~i~~ne~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG~GKTml 143 (386)
T KOG0737|consen 67 IIQKNEYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPGTGKTML 143 (386)
T ss_pred hhhhhHHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCCchHHHH
Confidence 7899999999999999999999999999999 999999999999999999998744 6677899999999999999999
Q ss_pred HHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCccccc
Q 007208 121 AKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITS 200 (613)
Q Consensus 121 aKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (613)
|||+|++.||.+++|+.+.++.|| ||++
T Consensus 144 AKA~Akeaga~fInv~~s~lt~KW---fgE~------------------------------------------------- 171 (386)
T KOG0737|consen 144 AKAIAKEAGANFINVSVSNLTSKW---FGEA------------------------------------------------- 171 (386)
T ss_pred HHHHHHHcCCCcceeeccccchhh---HHHH-------------------------------------------------
Confidence 999999999999999999998666 4443
Q ss_pred CCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh
Q 007208 201 RGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS 280 (613)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s 280 (613)
..++.++|.++++. +|+|||||++|+++..+
T Consensus 172 ----------------------------------------------eKlv~AvFslAsKl---~P~iIFIDEvds~L~~R 202 (386)
T KOG0737|consen 172 ----------------------------------------------QKLVKAVFSLASKL---QPSIIFIDEVDSFLGQR 202 (386)
T ss_pred ----------------------------------------------HHHHHHHHhhhhhc---CcceeehhhHHHHHhhc
Confidence 34778888887755 99999999999999765
Q ss_pred ------------hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHH
Q 007208 281 ------------QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEED 348 (613)
Q Consensus 281 ------------~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d 348 (613)
.+|+.+|+.+..+-..+|||+|. +|++.++|+++.|+||..+.|++|+.++|..||+..|..
T Consensus 203 ~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA-----TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~- 276 (386)
T KOG0737|consen 203 RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGA-----TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK- 276 (386)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeC-----CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc-
Confidence 23555555555555556999995 899999999999999999999999999999999988753
Q ss_pred HHHhhhhhhhhHHHHHhhcCCCCchhhhhhccc
Q 007208 349 MKMMQAKDNRNHIMEVLSANDLDCDDLDSINVA 381 (613)
Q Consensus 349 ~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~ 381 (613)
+....+.|+++++ -.+.|++++||..+|..
T Consensus 277 -e~~e~~vD~~~iA--~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 277 -EKLEDDVDLDEIA--QMTEGYSGSDLKELCRL 306 (386)
T ss_pred -cccCcccCHHHHH--HhcCCCcHHHHHHHHHH
Confidence 2111223333333 34556666666666665
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-30 Score=277.92 Aligned_cols=261 Identities=17% Similarity=0.272 Sum_probs=197.4
Q ss_pred HHHHHHHHHHhhhc-----CCCEEEEEccchhhhhhh----------hHHHHHHHHHHHhhc--CcEEEEeeeeccCCCC
Q 007208 249 LIQSIYRVLCYVSK-----TSPIVVYLRDVDKLIFKS----------QRTYNLFQKMMKKLL--ASVLILGSRIVDLSND 311 (613)
Q Consensus 249 ~lqaL~evl~s~s~-----~~P~IL~idDiD~~l~~s----------~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~ 311 (613)
-++-||.-+.++-+ +.=-||++|++|.+-.++ +..+++|...+|... .++||||- +|+
T Consensus 304 NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGM-----TNR 378 (744)
T KOG0741|consen 304 NVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGM-----TNR 378 (744)
T ss_pred HHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEec-----cCc
Confidence 34555555544433 233799999999954433 457888888888766 58999995 788
Q ss_pred ccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhh
Q 007208 312 QREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNY 389 (613)
Q Consensus 312 ~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ 389 (613)
.+-+|+++.| +|..++||.+|+|++|++||++|-.+ ++.| -....|++..+|+.++++ |++++
T Consensus 379 ~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~r------Mre~------~~l~~dVdl~elA~lTKN---fSGAE 443 (744)
T KOG0741|consen 379 KDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKR------MREN------NKLSADVDLKELAALTKN---FSGAE 443 (744)
T ss_pred hhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhh------hhhc------CCCCCCcCHHHHHHHhcC---CchhH
Confidence 8999999998 99999999999999999999999544 4333 234678999999999999 99999
Q ss_pred HHHHHHHHHHhhhhcCCCcc-------cCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCC
Q 007208 390 IEEIVVSAVSYHLMNNEDTD-------YRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKP 462 (613)
Q Consensus 390 ie~iV~~A~s~~l~~~~~~~-------~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~ 462 (613)
||.+|++|.|+++.+.-... ....++.++++||-+||+ +++||||.
T Consensus 444 leglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~-------------------------dVkPAFG~-- 496 (744)
T KOG0741|consen 444 LEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALE-------------------------DVKPAFGI-- 496 (744)
T ss_pred HHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHH-------------------------hcCcccCC--
Confidence 99999999999975433211 124589999999999997 67899999
Q ss_pred CCCcccCCCCCchhhhhhcCCCCCCCCCCcccccCCCCCCCCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHH
Q 007208 463 AAGTEIMKPESTSEAEKSAAAPNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELV 542 (613)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v 542 (613)
.+++++..+..++|...++ +..| +++- .-++
T Consensus 497 ----------------------------------------see~l~~~~~~Gmi~~g~~---v~~i--l~~G----~llv 527 (744)
T KOG0741|consen 497 ----------------------------------------SEEDLERFVMNGMINWGPP---VTRI--LDDG----KLLV 527 (744)
T ss_pred ----------------------------------------CHHHHHHHHhCCceeeccc---HHHH--HhhH----HHHH
Confidence 4678999999999875443 2221 1111 1111
Q ss_pred HCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCCc--ch--HH--HHHHHHHHHHhhC
Q 007208 543 MLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLPS--LP--NG--LVRMRRMFELYSR 613 (613)
Q Consensus 543 ~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~~--lg--e~--e~~Ir~IF~~A~r 613 (613)
.. ++. ...++..++||+||||+|||+||.-+|..+++||+ .+.+|+ +| |+ ...|+++|++|||
T Consensus 528 ~q-vk~------s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFv-KiiSpe~miG~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 528 QQ-VKN------SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFV-KIISPEDMIGLSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred HH-hhc------cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeE-EEeChHHccCccHHHHHHHHHHHHHHhhc
Confidence 11 222 34456678999999999999999999999999999 555553 44 33 3499999999997
No 8
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.5e-26 Score=251.22 Aligned_cols=253 Identities=22% Similarity=0.336 Sum_probs=193.2
Q ss_pred HHHHHhhhcCCCEEEEEccchhhhhhhh--------HHHHHHHHHHHhhc-CcEEEEeeeeccCCCCccccchHhhc--c
Q 007208 254 YRVLCYVSKTSPIVVYLRDVDKLIFKSQ--------RTYNLFQKMMKKLL-ASVLILGSRIVDLSNDQREVDGRVTA--L 322 (613)
Q Consensus 254 ~evl~s~s~~~P~IL~idDiD~~l~~s~--------r~~~~l~~~l~~l~-g~VlIiGS~~~ds~~~~~~v~~~l~~--l 322 (613)
.+.+..+.+.+|.|+++|++|.+..... +.+..+...++.+. +.|+++| .++....++..+.+ +
T Consensus 66 ~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~-----~~~~~~~~~~a~~~~~~ 140 (494)
T COG0464 66 RELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIG-----ATNRPDGLDPAKRRPGR 140 (494)
T ss_pred HHHHHHHHHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEe-----ecCCccccChhHhCccc
Confidence 3444456666999999999999877652 35666666666555 3366776 35666777777766 8
Q ss_pred CCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhh
Q 007208 323 FPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHL 402 (613)
Q Consensus 323 F~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l 402 (613)
|..++.+..|+.+.|++|++.+... +......++..++..+.+ ++.+++..++..|...++
T Consensus 141 ~~~~~~~~~~~~~~~~ei~~~~~~~----------------~~~~~~~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~ 201 (494)
T COG0464 141 FDREIEVNLPDEAGRLEILQIHTRL----------------MFLGPPGTGKTLAARTVG---KSGADLGALAKEAALREL 201 (494)
T ss_pred cceeeecCCCCHHHHHHHHHHHHhc----------------CCCcccccHHHHHHhcCC---ccHHHHHHHHHHHHHHHH
Confidence 9999999999999999988865311 112225666777777777 888999999888877776
Q ss_pred hcCCCcccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhcC
Q 007208 403 MNNEDTDYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAA 482 (613)
Q Consensus 403 ~~~~~~~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s 482 (613)
.+.. ......+.++.+++..+++.+..
T Consensus 202 ~r~~--~~~~~~~~~~~~~~~~~l~~~~~--------------------------------------------------- 228 (494)
T COG0464 202 RRAI--DLVGEYIGVTEDDFEEALKKVLP--------------------------------------------------- 228 (494)
T ss_pred Hhhh--ccCcccccccHHHHHHHHHhcCc---------------------------------------------------
Confidence 6531 01123456777778777752210
Q ss_pred CCCCCCCCCcccccCCCCCCCCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCc
Q 007208 483 APNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRG 562 (613)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~g 562 (613)
. ..+....+.++|+|+||++++++.+++.+.+|+++|+.|...++.+++|
T Consensus 229 ---------------------~---------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~g 278 (494)
T COG0464 229 ---------------------S---------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKG 278 (494)
T ss_pred ---------------------c---------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCe
Confidence 0 1223445689999999999999999999999999999999889999999
Q ss_pred eeeecCCCCCchhhhhhhHHhhCCceeec----cCCCcchHHHHHHHHHHHHhhC
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQASLMS----PCLPSLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~~fi~~----v~~~~lge~e~~Ir~IF~~A~r 613 (613)
+|||||||||||++|+|+|++++.+|+.. ..+.|+|+++++||++|++|++
T Consensus 279 iLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~ 333 (494)
T COG0464 279 VLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARK 333 (494)
T ss_pred eEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999943 3446899999999999999973
No 9
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.9e-26 Score=241.30 Aligned_cols=175 Identities=37% Similarity=0.589 Sum_probs=151.0
Q ss_pred hcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccC
Q 007208 378 INVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEA 457 (613)
Q Consensus 378 l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~ 457 (613)
.|..|..+....|+.++.||++||++++..|.+.+ ++.++.+++.++...|+..... .
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----------~---------- 61 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----------L---------- 61 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----------c----------
Confidence 56677788889999999999999999999888876 8999999999998766421000 0
Q ss_pred CCCCCCCCcccCCCCCchhhhhhcCCCCCCCCCCcccccCCC-CCCCCchHHhhhcCCCccCCCCccccccccccHHHHH
Q 007208 458 KGPKPAAGTEIMKPESTSEAEKSAAAPNKDGDSSVPAAAKAP-EVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKE 536 (613)
Q Consensus 458 ~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~ 536 (613)
..+ .+...++||..+...++.|.+++|+|+||||++.+++
T Consensus 62 ---------------------------------------s~k~~~i~~ne~E~~i~s~~v~p~~I~v~f~DIggLe~v~~ 102 (386)
T KOG0737|consen 62 ---------------------------------------SLKYRIIQKNEYEKRIASDVVPPSEIGVSFDDIGGLEEVKD 102 (386)
T ss_pred ---------------------------------------chhhhhhhhhHHHHHhhhcccchhhceeehhhccchHHHHH
Confidence 111 3457899999999999999999999999999999999
Q ss_pred HHHHHHHCcCCChhhhh-cCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec----cCCCcchHHHHHHHHHHHHh
Q 007208 537 SLQELVMLPLRRPDLFK-GGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS----PCLPSLPNGLVRMRRMFELY 611 (613)
Q Consensus 537 ~l~e~v~~pl~~pe~~~-~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~----v~~~~lge~e~~Ir~IF~~A 611 (613)
.+++.|++|+++|++|. .....|++|||||||||||||++|+|+|+++|++||.+ +.+.|.|++++.++.+|..|
T Consensus 103 ~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslA 182 (386)
T KOG0737|consen 103 ALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLA 182 (386)
T ss_pred HHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhh
Confidence 99999999999999995 45568999999999999999999999999999999933 33368999999999999998
Q ss_pred hC
Q 007208 612 SR 613 (613)
Q Consensus 612 ~r 613 (613)
+|
T Consensus 183 sK 184 (386)
T KOG0737|consen 183 SK 184 (386)
T ss_pred hh
Confidence 75
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-24 Score=223.83 Aligned_cols=234 Identities=17% Similarity=0.264 Sum_probs=192.9
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+.-+|||++.++. |...+.|.+++-.+|+||+++.-. .+ .++++|||+||++.++++||||.|++-+|.||-+-.+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~-GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS 219 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEEL-GI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS 219 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHc-CC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH
Confidence 4568999999999 999999999999999999984432 23 3566799999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
.|-+|+ -|+.
T Consensus 220 ElVqKY---iGEG------------------------------------------------------------------- 229 (406)
T COG1222 220 ELVQKY---IGEG------------------------------------------------------------------- 229 (406)
T ss_pred HHHHHH---hccc-------------------------------------------------------------------
Confidence 998887 2332
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLF 287 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l 287 (613)
-++++.||+++.+ +.|+|||||+||++-.++ ||.+-.|
T Consensus 230 ----------------------------aRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleL 278 (406)
T COG1222 230 ----------------------------ARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLEL 278 (406)
T ss_pred ----------------------------hHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHH
Confidence 2377888887444 599999999999976664 5555556
Q ss_pred HHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007208 288 QKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIME 363 (613)
Q Consensus 288 ~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~ 363 (613)
...||.+. ++|-||+. +|+++-+|.+|.| +|+.+||+++|+.++|.+||++|-..
T Consensus 279 L~qlDGFD~~~nvKVI~A-----TNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk---------------- 337 (406)
T COG1222 279 LNQLDGFDPRGNVKVIMA-----TNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK---------------- 337 (406)
T ss_pred HHhccCCCCCCCeEEEEe-----cCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh----------------
Confidence 66666665 67866664 7888999999998 99999999999999999999988422
Q ss_pred HhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 364 VLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 364 vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
+..+.+++...|+.+|.+ +++++|..|+.-|=.+++. .++-.++++||..|.+..
T Consensus 338 M~l~~dvd~e~la~~~~g---~sGAdlkaictEAGm~AiR--------~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 338 MNLADDVDLELLARLTEG---FSGADLKAICTEAGMFAIR--------ERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred ccCccCcCHHHHHHhcCC---CchHHHHHHHHHHhHHHHH--------hccCeecHHHHHHHHHHH
Confidence 335678888889998888 9999999999989888875 345569999999999744
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=232.88 Aligned_cols=235 Identities=20% Similarity=0.271 Sum_probs=197.0
Q ss_pred CCCcccccccccccccHHHHHHHHHHHHhhcCCCcc-cccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 58 GRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEV-SKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 58 ~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~-~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
.+--+|+|+++..| |+.|..|-.++-.+++||+. .+|+ .+.+++|||+||++|.++++|||||++.++.||-+-
T Consensus 426 ve~p~v~W~dIGGl--E~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk 500 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGL--EELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK 500 (693)
T ss_pred ccCCCCChhhccCH--HHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc
Confidence 67789999999999 99999999999999999974 4554 567888999999999999999999999999999998
Q ss_pred cccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccC
Q 007208 137 VTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNA 216 (613)
Q Consensus 137 ~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (613)
.-.+..+| +|++
T Consensus 501 gpEL~sk~---vGeS----------------------------------------------------------------- 512 (693)
T KOG0730|consen 501 GPELFSKY---VGES----------------------------------------------------------------- 512 (693)
T ss_pred CHHHHHHh---cCch-----------------------------------------------------------------
Confidence 87776555 4443
Q ss_pred ccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHH
Q 007208 217 SASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQ 288 (613)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~ 288 (613)
+ .+|.++|..+.+.+|+|||||++|.+...+ .|..+.|.
T Consensus 513 ------------------------------E---r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLL 559 (693)
T KOG0730|consen 513 ------------------------------E---RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLL 559 (693)
T ss_pred ------------------------------H---HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHH
Confidence 1 234566667777899999999999977654 57889999
Q ss_pred HHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007208 289 KMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEV 364 (613)
Q Consensus 289 ~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~v 364 (613)
..||.+. .+|+|+|. +|+++.+|.++.+ +|+..|.|++|+.+.|++|||+++.. |
T Consensus 560 tEmDG~e~~k~V~ViAA-----TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-m--------------- 618 (693)
T KOG0730|consen 560 TEMDGLEALKNVLVIAA-----TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-M--------------- 618 (693)
T ss_pred HHcccccccCcEEEEec-----cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-C---------------
Confidence 9999876 46999995 8999999999999 99999999999999999999998643 1
Q ss_pred hhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhh
Q 007208 365 LSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSI 428 (613)
Q Consensus 365 L~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~ 428 (613)
-...+++...|+..+.+ |++++|..++..|--.+++.+-+. ..|..++|.+|++-
T Consensus 619 p~~~~vdl~~La~~T~g---~SGAel~~lCq~A~~~a~~e~i~a------~~i~~~hf~~al~~ 673 (693)
T KOG0730|consen 619 PFSEDVDLEELAQATEG---YSGAEIVAVCQEAALLALRESIEA------TEITWQHFEEALKA 673 (693)
T ss_pred CCCccccHHHHHHHhcc---CChHHHHHHHHHHHHHHHHHhccc------ccccHHHHHHHHHh
Confidence 12345677777777777 999999999999999999876652 24888999999973
No 12
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.6e-24 Score=222.55 Aligned_cols=96 Identities=31% Similarity=0.580 Sum_probs=89.8
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC---
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL--- 594 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~--- 594 (613)
.+.|+++|+||||+++++++|+|.|++||+||++|...|+.||+|||||||||||||+||||+|++.++.||..+.+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999966655
Q ss_pred -CcchHHHHHHHHHHHHhhC
Q 007208 595 -PSLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 595 -~~lge~e~~Ir~IF~~A~r 613 (613)
.|+|++.+-||++|+.|+.
T Consensus 223 qKYiGEGaRlVRelF~lAre 242 (406)
T COG1222 223 QKYIGEGARLVRELFELARE 242 (406)
T ss_pred HHHhccchHHHHHHHHHHhh
Confidence 3899999999999999863
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.3e-22 Score=218.75 Aligned_cols=264 Identities=19% Similarity=0.295 Sum_probs=198.1
Q ss_pred CCChHHHHHHHHHcccCCC-------CcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecch
Q 007208 41 AVTPEKMEKELLRQIVDGR-------ESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPA 113 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~~-------~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~ 113 (613)
.++.+.|++.+.. |.+.- ==+|||+|++.. +..|+.|..|...+.|+|+.++-. .+.+ ..+|||+||+
T Consensus 480 ~i~~eDF~~Al~~-iQPSakREGF~tVPdVtW~dIGaL--~~vR~eL~~aI~~PiK~pd~~k~l-Gi~~-PsGvLL~GPP 554 (802)
T KOG0733|consen 480 SIKFEDFEEALSK-IQPSAKREGFATVPDVTWDDIGAL--EEVRLELNMAILAPIKRPDLFKAL-GIDA-PSGVLLCGPP 554 (802)
T ss_pred eecHHHHHHHHHh-cCcchhcccceecCCCChhhcccH--HHHHHHHHHHHhhhccCHHHHHHh-CCCC-CCceEEeCCC
Confidence 6788888877642 22111 126999999999 999999999999999999984432 3444 7789999999
Q ss_pred hHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCC
Q 007208 114 ELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQG 193 (613)
Q Consensus 114 e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 193 (613)
+|+++.||||.|++.|+.|+-+-.-.|..+| .|+
T Consensus 555 GCGKTLlAKAVANEag~NFisVKGPELlNkY---VGE------------------------------------------- 588 (802)
T KOG0733|consen 555 GCGKTLLAKAVANEAGANFISVKGPELLNKY---VGE------------------------------------------- 588 (802)
T ss_pred CccHHHHHHHHhhhccCceEeecCHHHHHHH---hhh-------------------------------------------
Confidence 9999999999999999999999988777555 222
Q ss_pred CCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccc
Q 007208 194 SGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDV 273 (613)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDi 273 (613)
..+++++ ||.++..++|||||||++
T Consensus 589 ----------------------------------------------------SErAVR~---vFqRAR~saPCVIFFDEi 613 (802)
T KOG0733|consen 589 ----------------------------------------------------SERAVRQ---VFQRARASAPCVIFFDEI 613 (802)
T ss_pred ----------------------------------------------------HHHHHHH---HHHHhhcCCCeEEEecch
Confidence 2234444 555787889999999999
Q ss_pred hhhhhhh--------hHHHHHHHHHHHhhcC--cEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHH
Q 007208 274 DKLIFKS--------QRTYNLFQKMMKKLLA--SVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 274 D~~l~~s--------~r~~~~l~~~l~~l~g--~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Il 341 (613)
|.+.+++ .|.+++|...||.+.+ +|.|||. +|+++-+|.++.| +|++-+-+++|+.++|.+||
T Consensus 614 DaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaA-----TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~IL 688 (802)
T KOG0733|consen 614 DALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAA-----TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAIL 688 (802)
T ss_pred hhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEee-----cCCCcccchhhcCCCccCceeeecCCCHHHHHHHH
Confidence 9987764 6899999999999975 5788885 8899999999998 99999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcc--cCcccchhhHHHHHHHHHHhhhhc--------CCCcccC
Q 007208 342 KSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINV--ADTMVLGNYIEEIVVSAVSYHLMN--------NEDTDYR 411 (613)
Q Consensus 342 k~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~--~d~~~~~~~ie~iV~~A~s~~l~~--------~~~~~~~ 411 (613)
|.+... .+ --...+++.++++.... + ||++|+..+|+.|.-.+|.. ..+-..+
T Consensus 689 K~~tkn-~k-------------~pl~~dVdl~eia~~~~c~g---ftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~ 751 (802)
T KOG0733|consen 689 KTITKN-TK-------------PPLSSDVDLDEIARNTKCEG---FTGADLAALVREASILALRESLFEIDSSEDDVTVR 751 (802)
T ss_pred HHHhcc-CC-------------CCCCcccCHHHHhhcccccC---CchhhHHHHHHHHHHHHHHHHHhhccccCccccee
Confidence 988542 11 11233555555555433 4 77777777777775555421 1111112
Q ss_pred CCceeechhhHHhhhhhhhcc
Q 007208 412 NGKLIISSKSLSHGLSIFQEG 432 (613)
Q Consensus 412 ~~~l~is~~sl~~al~~~q~~ 432 (613)
.....++..+|+.|++.+..+
T Consensus 752 ~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 752 SSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred eeeeeecHHHHHHHHHhcCCC
Confidence 224568889999999877543
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.8e-21 Score=201.94 Aligned_cols=254 Identities=19% Similarity=0.285 Sum_probs=195.5
Q ss_pred HHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHH
Q 007208 46 KMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALA 125 (613)
Q Consensus 46 ~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA 125 (613)
.+-+.|.+-|+. ++.+|.||++-.. ++.|.+|.+|+..++..|+|++..+. .=++|||.||++.+++|||||+|
T Consensus 193 ~Lve~lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~Girr---PWkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 193 DLVEALERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFKGIRR---PWKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred HHHHHHHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHhhccc---ccceeeeeCCCCCcHHHHHHHHH
Confidence 455566666665 5677999999999 99999999999999999998776654 55789999999999999999999
Q ss_pred hhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccC
Q 007208 126 HFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEG 205 (613)
Q Consensus 126 ~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (613)
.++|..|.++-+++++-||
T Consensus 267 TEc~tTFFNVSsstltSKw------------------------------------------------------------- 285 (491)
T KOG0738|consen 267 TECGTTFFNVSSSTLTSKW------------------------------------------------------------- 285 (491)
T ss_pred HhhcCeEEEechhhhhhhh-------------------------------------------------------------
Confidence 9999999999999987554
Q ss_pred CCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----
Q 007208 206 SFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS----- 280 (613)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s----- 280 (613)
-++...+|+.||+.+.-- +|++||||+||.+-.++
T Consensus 286 -------------------------------------RGeSEKlvRlLFemARfy---APStIFiDEIDslcs~RG~s~E 325 (491)
T KOG0738|consen 286 -------------------------------------RGESEKLVRLLFEMARFY---APSTIFIDEIDSLCSQRGGSSE 325 (491)
T ss_pred -------------------------------------ccchHHHHHHHHHHHHHh---CCceeehhhHHHHHhcCCCccc
Confidence 333455789999985555 99999999999966553
Q ss_pred ----hHHHHHHHHHHHhhcC---c---EEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHH
Q 007208 281 ----QRTYNLFQKMMKKLLA---S---VLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMK 350 (613)
Q Consensus 281 ----~r~~~~l~~~l~~l~g---~---VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k 350 (613)
.|+-+-|.-.+|.+.+ + |+|+++ +|-+.++|++++|+|...|-|++|+.++|..+++..|..
T Consensus 326 HEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA-----TN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~--- 397 (491)
T KOG0738|consen 326 HEASRRVKSELLVQMDGVQGTLENSKVVMVLAA-----TNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS--- 397 (491)
T ss_pred hhHHHHHHHHHHHHhhccccccccceeEEEEec-----cCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc---
Confidence 3455556666666553 2 788885 777899999999999999999999999999999877643
Q ss_pred HhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCC---c-ccC---CC--ceeechhh
Q 007208 351 MMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNED---T-DYR---NG--KLIISSKS 421 (613)
Q Consensus 351 ~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~---~-~~~---~~--~l~is~~s 421 (613)
+-...++..++|+....+ |++++|..++..|.-+.+.+.-. | +.+ .. +.-++.+|
T Consensus 398 -------------~~~~~~~~~~~lae~~eG---ySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~D 461 (491)
T KOG0738|consen 398 -------------VELDDPVNLEDLAERSEG---YSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNED 461 (491)
T ss_pred -------------ccCCCCccHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhh
Confidence 234556677777777777 88888877777776555432111 0 010 11 24488999
Q ss_pred HHhhhhhhh
Q 007208 422 LSHGLSIFQ 430 (613)
Q Consensus 422 l~~al~~~q 430 (613)
|+.|++..+
T Consensus 462 fe~Al~~v~ 470 (491)
T KOG0738|consen 462 FEEALRKVR 470 (491)
T ss_pred HHHHHHHcC
Confidence 999998554
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.1e-20 Score=207.65 Aligned_cols=261 Identities=17% Similarity=0.247 Sum_probs=210.7
Q ss_pred hHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHH
Q 007208 44 PEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKA 123 (613)
Q Consensus 44 ~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKA 123 (613)
.++++.++...|=-|+==+|+||+.++. |.+|.++.+..-.+|+||++ |+++|-..|+ |||+||++++++.||||
T Consensus 650 ls~~~~~fs~aiGAPKIPnV~WdDVGGL--eevK~eIldTIqlPL~hpeL--fssglrkRSG-ILLYGPPGTGKTLlAKA 724 (953)
T KOG0736|consen 650 LSRLQKEFSDAIGAPKIPNVSWDDVGGL--EEVKTEILDTIQLPLKHPEL--FSSGLRKRSG-ILLYGPPGTGKTLLAKA 724 (953)
T ss_pred HHHHHHhhhhhcCCCCCCccchhcccCH--HHHHHHHHHHhcCcccChhh--hhccccccce-eEEECCCCCchHHHHHH
Confidence 4566778888888899999999999999 99999999999999999999 7888887776 99999999999999999
Q ss_pred HHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCc
Q 007208 124 LAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGT 203 (613)
Q Consensus 124 LA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (613)
.|.+|.-.||.+-.-.+...+ .|.|
T Consensus 725 VATEcsL~FlSVKGPELLNMY---VGqS---------------------------------------------------- 749 (953)
T KOG0736|consen 725 VATECSLNFLSVKGPELLNMY---VGQS---------------------------------------------------- 749 (953)
T ss_pred HHhhceeeEEeecCHHHHHHH---hcch----------------------------------------------------
Confidence 999999999998886665332 1221
Q ss_pred cCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh---
Q 007208 204 EGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--- 280 (613)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--- 280 (613)
| ..++ +||.++..+.|||||||++|++.+.+
T Consensus 750 ------------------------------------------E-~NVR---~VFerAR~A~PCVIFFDELDSlAP~RG~s 783 (953)
T KOG0736|consen 750 ------------------------------------------E-ENVR---EVFERARSAAPCVIFFDELDSLAPNRGRS 783 (953)
T ss_pred ------------------------------------------H-HHHH---HHHHHhhccCCeEEEeccccccCccCCCC
Confidence 1 1233 55556767799999999999987664
Q ss_pred -------hHHHHHHHHHHHhhcC----cEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChH-HHHHHHHHHHH
Q 007208 281 -------QRTYNLFQKMMKKLLA----SVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDE-NHLVSWKSQLE 346 (613)
Q Consensus 281 -------~r~~~~l~~~l~~l~g----~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee-~Rl~Ilk~~L~ 346 (613)
+|.+++|...||+++. .|.|||. +|+++-+|+++.| ||+.=+.+++++++ -++.+|+.+-
T Consensus 784 GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGA-----TNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT- 857 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA-----TNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT- 857 (953)
T ss_pred CCccccHHHHHHHHHHHhhcccCCCCCceEEEec-----CCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH-
Confidence 7899999999999984 5999995 8999999999998 99999999999765 4666776652
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCC---------cccCCCceee
Q 007208 347 EDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNED---------TDYRNGKLII 417 (613)
Q Consensus 347 ~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~---------~~~~~~~l~i 417 (613)
. ++-.+.+++..+++..|.. .+|++|++.|+..|+-.++.+..+ .+-.+.++++
T Consensus 858 -----r----------kFkLdedVdL~eiAk~cp~--~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V 920 (953)
T KOG0736|consen 858 -----R----------KFKLDEDVDLVEIAKKCPP--NMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRV 920 (953)
T ss_pred -----H----------HccCCCCcCHHHHHhhCCc--CCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEE
Confidence 1 2345678888888888875 578999999988887666532211 2234668999
Q ss_pred chhhHHhhhhhhhccc
Q 007208 418 SSKSLSHGLSIFQEGK 433 (613)
Q Consensus 418 s~~sl~~al~~~q~~~ 433 (613)
+++||-.+++.|+.+-
T Consensus 921 ~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 921 TMEDFLKSAKRLQPSV 936 (953)
T ss_pred EHHHHHHHHHhcCCcc
Confidence 9999999999888643
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5e-20 Score=205.10 Aligned_cols=255 Identities=20% Similarity=0.279 Sum_probs=204.5
Q ss_pred CCCCChHHHHHHHHHc----ccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchh
Q 007208 39 PNAVTPEKMEKELLRQ----IVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAE 114 (613)
Q Consensus 39 ~~~~~~~~~e~~l~~~----vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e 114 (613)
.-.++.+++++.|.+. .+.-.+-.|+|++...+ +..|..|.+++-..+++++. |.+-.-...++|||+||++
T Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~--~~~~~~~~~~giLl~GpPG 286 (494)
T COG0464 211 YIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPEL--FRKLGLRPPKGVLLYGPPG 286 (494)
T ss_pred cccccHHHHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHH--HHhcCCCCCCeeEEECCCC
Confidence 3378888999888875 45567788999999998 99999999999999999997 4332234444899999999
Q ss_pred HHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCC
Q 007208 115 LYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGS 194 (613)
Q Consensus 115 ~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 194 (613)
++++|||||+|++.+++|+.++..++..+| .|++
T Consensus 287 tGKT~lAkava~~~~~~fi~v~~~~l~sk~---vGes------------------------------------------- 320 (494)
T COG0464 287 TGKTLLAKAVALESRSRFISVKGSELLSKW---VGES------------------------------------------- 320 (494)
T ss_pred CCHHHHHHHHHhhCCCeEEEeeCHHHhccc---cchH-------------------------------------------
Confidence 999999999999999999999998876444 2322
Q ss_pred CcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccch
Q 007208 195 GVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVD 274 (613)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD 274 (613)
...++.+|+. +.+.+|+|||||++|
T Consensus 321 ----------------------------------------------------ek~ir~~F~~---A~~~~p~iiFiDEiD 345 (494)
T COG0464 321 ----------------------------------------------------EKNIRELFEK---ARKLAPSIIFIDEID 345 (494)
T ss_pred ----------------------------------------------------HHHHHHHHHH---HHcCCCcEEEEEchh
Confidence 2345566664 445699999999999
Q ss_pred hhhhhh--------hHHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHH
Q 007208 275 KLIFKS--------QRTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 275 ~~l~~s--------~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
+|+..+ .|.+..|...++.+. .+|+|||+ +|.++.+|+++.+ +|+..|.|++|+.++|++||+
T Consensus 346 s~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~a-----TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 346 SLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAA-----TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFK 420 (494)
T ss_pred hhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEec-----CCCccccCHhhcccCccceEeecCCCCHHHHHHHHH
Confidence 999875 268888888887655 56888985 8888999999999 999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhH
Q 007208 343 SQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSL 422 (613)
Q Consensus 343 ~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl 422 (613)
.++.+-.. . ...+++...|+..+.+ +++++|..++..|....+.+.. ...|+.++|
T Consensus 421 ~~~~~~~~-~-------------~~~~~~~~~l~~~t~~---~sgadi~~i~~ea~~~~~~~~~-------~~~~~~~~~ 476 (494)
T COG0464 421 IHLRDKKP-P-------------LAEDVDLEELAEITEG---YSGADIAALVREAALEALREAR-------RREVTLDDF 476 (494)
T ss_pred HHhcccCC-c-------------chhhhhHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHhc-------cCCccHHHH
Confidence 98753111 0 1235666677776666 9999999999999998887553 234889999
Q ss_pred Hhhhh
Q 007208 423 SHGLS 427 (613)
Q Consensus 423 ~~al~ 427 (613)
..|+.
T Consensus 477 ~~a~~ 481 (494)
T COG0464 477 LDALK 481 (494)
T ss_pred HHHHH
Confidence 99997
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.83 E-value=2.1e-19 Score=199.24 Aligned_cols=235 Identities=19% Similarity=0.250 Sum_probs=173.3
Q ss_pred cCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEe
Q 007208 56 VDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLL 135 (613)
Q Consensus 56 v~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~l 135 (613)
+.-...+++|++..++ ++.|..|....-..... ...|+ + +.+++|||+||++++++++|||+|++++++|+.+
T Consensus 218 le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~~--~~~~g--l-~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 218 LEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSKQ--ASNYG--L-PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred ccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhHH--HHhcC--C-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3444467889999998 99999888754322111 11232 2 4568899999999999999999999999999999
Q ss_pred ecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcccccc
Q 007208 136 DVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRN 215 (613)
Q Consensus 136 D~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (613)
|...|..++
T Consensus 291 ~~~~l~~~~----------------------------------------------------------------------- 299 (489)
T CHL00195 291 DVGKLFGGI----------------------------------------------------------------------- 299 (489)
T ss_pred EhHHhcccc-----------------------------------------------------------------------
Confidence 987664111
Q ss_pred CccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh---------hHHHHH
Q 007208 216 ASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS---------QRTYNL 286 (613)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s---------~r~~~~ 286 (613)
.......++.+|+. +...+|+||||||+|+++.+. .++...
T Consensus 300 ---------------------------vGese~~l~~~f~~---A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~ 349 (489)
T CHL00195 300 ---------------------------VGESESRMRQMIRI---AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLAT 349 (489)
T ss_pred ---------------------------cChHHHHHHHHHHH---HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHH
Confidence 11111234555554 444599999999999987642 345555
Q ss_pred HHHHHHhhcCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007208 287 FQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEV 364 (613)
Q Consensus 287 l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~v 364 (613)
|...++....+|+|||+ +|+++.+|+++.+ +|+..|.|++|+.++|.+||+.+|.+-.. +
T Consensus 350 lL~~l~~~~~~V~vIaT-----TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~------~------- 411 (489)
T CHL00195 350 FITWLSEKKSPVFVVAT-----ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP------K------- 411 (489)
T ss_pred HHHHHhcCCCceEEEEe-----cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC------C-------
Confidence 66666666678988886 7788999999987 99999999999999999999999854110 0
Q ss_pred hhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 365 LSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 365 L~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++...|+..+.+ |++++|+.+|..|..+++.... .++.++|..|+..+
T Consensus 412 -~~~~~dl~~La~~T~G---fSGAdI~~lv~eA~~~A~~~~~---------~lt~~dl~~a~~~~ 463 (489)
T CHL00195 412 -SWKKYDIKKLSKLSNK---FSGAEIEQSIIEAMYIAFYEKR---------EFTTDDILLALKQF 463 (489)
T ss_pred -cccccCHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHcCC---------CcCHHHHHHHHHhc
Confidence 1125566777777777 9999999999999988875332 27889999999744
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.82 E-value=4e-19 Score=192.88 Aligned_cols=235 Identities=19% Similarity=0.312 Sum_probs=177.8
Q ss_pred CCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 58 GRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 58 ~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
-+.-+|+|+++..+ |..|..|.+++-.+|+++++.+.. .+ ..+++|||+||+++++++||||+|++.++.++.+..
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~-Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQI-GI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhc-CC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 35678999999999 999999999999999999874322 22 456789999999999999999999999999998877
Q ss_pred ccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCc
Q 007208 138 TDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNAS 217 (613)
Q Consensus 138 ~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (613)
.+|..++ .|.
T Consensus 213 s~l~~k~---~ge------------------------------------------------------------------- 222 (398)
T PTZ00454 213 SEFVQKY---LGE------------------------------------------------------------------- 222 (398)
T ss_pred HHHHHHh---cch-------------------------------------------------------------------
Confidence 6664332 111
Q ss_pred cccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHH
Q 007208 218 ASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNL 286 (613)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~ 286 (613)
....++.+|.. +.+.+|+||||||+|.++..+ ++....
T Consensus 223 ----------------------------~~~~lr~lf~~---A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~ 271 (398)
T PTZ00454 223 ----------------------------GPRMVRDVFRL---ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLE 271 (398)
T ss_pred ----------------------------hHHHHHHHHHH---HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHH
Confidence 11134445544 455799999999999976542 123333
Q ss_pred HHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007208 287 FQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIM 362 (613)
Q Consensus 287 l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~ 362 (613)
|...++.+. .+|+||++ ++.++.+|+++.+ +|+.+|+|++|+.++|.+||+.++.. +.
T Consensus 272 LL~~ld~~~~~~~v~VI~a-----TN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~------------ 333 (398)
T PTZ00454 272 LLNQMDGFDQTTNVKVIMA-----TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MN------------ 333 (398)
T ss_pred HHHHhhccCCCCCEEEEEe-----cCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CC------------
Confidence 333444433 46777775 6677899999987 99999999999999999999987632 10
Q ss_pred HHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 363 EVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 363 ~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++..+|+..+.+ |++++|..++..|...++.+. +-.|+.+||..|+...
T Consensus 334 ---l~~dvd~~~la~~t~g---~sgaDI~~l~~eA~~~A~r~~--------~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 334 ---LSEEVDLEDFVSRPEK---ISAADIAAICQEAGMQAVRKN--------RYVILPKDFEKGYKTV 386 (398)
T ss_pred ---CCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHcC--------CCccCHHHHHHHHHHH
Confidence 1345667777777777 999999999999988887643 3369999999999854
No 19
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.7e-20 Score=196.82 Aligned_cols=247 Identities=18% Similarity=0.255 Sum_probs=185.4
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
..=+|.|++||+. +..|..|.+++..++-.++++. +|.+.-+.|||.||++-+++||+||+|-|.+|.|..+-++
T Consensus 146 ~~~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F~---glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 146 TLRNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLFL---GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred cCCcccccCCcch--hhHHHHhhhhhhhcccchHhhh---ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHH
Confidence 3446889999999 9999999999999999998644 6777888999999999999999999999999999988888
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
.++-||
T Consensus 221 sLtsK~-------------------------------------------------------------------------- 226 (428)
T KOG0740|consen 221 SLTSKY-------------------------------------------------------------------------- 226 (428)
T ss_pred Hhhhhc--------------------------------------------------------------------------
Confidence 876443
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHH--
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQ-- 288 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~-- 288 (613)
.++...++.+||+|+... ||+||||||+|++++.+ .|+...|.
T Consensus 227 ------------------------~Ge~eK~vralf~vAr~~---qPsvifidEidslls~Rs~~e~e~srr~ktefLiq 279 (428)
T KOG0740|consen 227 ------------------------VGESEKLVRALFKVARSL---QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQ 279 (428)
T ss_pred ------------------------cChHHHHHHHHHHHHHhc---CCeEEEechhHHHHhhcCCcccccchhhhhHHHhh
Confidence 333345889999998887 99999999999999885 12222222
Q ss_pred --HHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 007208 289 --KMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLS 366 (613)
Q Consensus 289 --~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~ 366 (613)
..-..-.++|||+|+ +|.+..+|+++.++|...+.|++|+.+.|..+|+++|.++ .......++..|+.+
T Consensus 280 ~~~~~s~~~drvlviga-----TN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~-~~~l~~~d~~~l~~~-- 351 (428)
T KOG0740|consen 280 FDGKNSAPDDRVLVIGA-----TNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ-PNGLSDLDISLLAKV-- 351 (428)
T ss_pred hccccCCCCCeEEEEec-----CCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-CCCccHHHHHHHHHH--
Confidence 111223368999996 7888999999999999999999999999999999999987 344455666666653
Q ss_pred cCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 367 ANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 367 ~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
+.|+...|+.++|.+..|--.+.+... -.+.+-.. .+..-++-.+|..++...
T Consensus 352 Tegysgsdi~~l~kea~~~p~r~~~~~--~~~~~~~~--------~~~r~i~~~df~~a~~~i 404 (428)
T KOG0740|consen 352 TEGYSGSDITALCKEAAMGPLRELGGT--TDLEFIDA--------DKIRPITYPDFKNAFKNI 404 (428)
T ss_pred hcCcccccHHHHHHHhhcCchhhcccc--hhhhhcch--------hccCCCCcchHHHHHHhh
Confidence 457777777777777555433333221 01111111 112235557888888643
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.81 E-value=6.3e-19 Score=191.11 Aligned_cols=236 Identities=17% Similarity=0.304 Sum_probs=177.1
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+..+++|++++++ |..+..|.+....+++++++++.. . -..+++|||+||+++++++||||+|++++++++.++..
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~-g-~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEV-G-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhc-C-CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 4458999999999 999999999999999998864322 1 23456799999999999999999999999999999887
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
+|..++ .|.
T Consensus 200 ~l~~~~---~g~-------------------------------------------------------------------- 208 (389)
T PRK03992 200 ELVQKF---IGE-------------------------------------------------------------------- 208 (389)
T ss_pred HHhHhh---ccc--------------------------------------------------------------------
Confidence 775332 111
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKM 290 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~ 290 (613)
....++.+|+. +.+.+|+||||||+|.++..+ .+....+..+
T Consensus 209 ---------------------------~~~~i~~~f~~---a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~l 258 (389)
T PRK03992 209 ---------------------------GARLVRELFEL---AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 258 (389)
T ss_pred ---------------------------hHHHHHHHHHH---HHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHH
Confidence 11134445553 445699999999999976432 1222233334
Q ss_pred HH---hhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007208 291 MK---KLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIME 363 (613)
Q Consensus 291 l~---~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~ 363 (613)
+. .+. ++|.|||+ ++.++.++.++.+ +|...|+|++|+.++|.+||+.++..
T Consensus 259 L~~ld~~~~~~~v~VI~a-----Tn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~---------------- 317 (389)
T PRK03992 259 LAEMDGFDPRGNVKIIAA-----TNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK---------------- 317 (389)
T ss_pred HHhccccCCCCCEEEEEe-----cCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc----------------
Confidence 43 332 46877775 5566789999987 99999999999999999999987632
Q ss_pred HhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhhc
Q 007208 364 VLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQE 431 (613)
Q Consensus 364 vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~ 431 (613)
+-...+++..+|+..+.+ +++++|..++..|...++.++. -.|+.+||..|+..++.
T Consensus 318 ~~~~~~~~~~~la~~t~g---~sgadl~~l~~eA~~~a~~~~~--------~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 318 MNLADDVDLEELAELTEG---ASGADLKAICTEAGMFAIRDDR--------TEVTMEDFLKAIEKVMG 374 (389)
T ss_pred CCCCCcCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHcCC--------CCcCHHHHHHHHHHHhc
Confidence 111235677788888887 9999999999999988876532 24899999999986653
No 21
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5e-20 Score=188.04 Aligned_cols=225 Identities=21% Similarity=0.290 Sum_probs=171.7
Q ss_pred hHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHH
Q 007208 44 PEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKA 123 (613)
Q Consensus 44 ~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKA 123 (613)
.-.++..|...|| -+.=+|-|++.-.+ |..|+.|-+|+..+.|.|.++..-+. .=++|||+||++.++-.||||
T Consensus 112 ~kKLr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGkR~---PwrgiLLyGPPGTGKSYLAKA 185 (439)
T KOG0739|consen 112 KKKLRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGKRK---PWRGILLYGPPGTGKSYLAKA 185 (439)
T ss_pred HHHHHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCCCC---cceeEEEeCCCCCcHHHHHHH
Confidence 3456667777766 46779999999999 99999999999999999998666554 346799999999999999999
Q ss_pred HHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCc
Q 007208 124 LAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGT 203 (613)
Q Consensus 124 LA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (613)
.|.+.+..|..+-|+|+..||
T Consensus 186 VATEAnSTFFSvSSSDLvSKW----------------------------------------------------------- 206 (439)
T KOG0739|consen 186 VATEANSTFFSVSSSDLVSKW----------------------------------------------------------- 206 (439)
T ss_pred HHhhcCCceEEeehHHHHHHH-----------------------------------------------------------
Confidence 999999999999999997555
Q ss_pred cCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh---
Q 007208 204 EGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--- 280 (613)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--- 280 (613)
......++.-||+.+.+- .|+|||||+||. +|++
T Consensus 207 ---------------------------------------mGESEkLVknLFemARe~---kPSIIFiDEiDs-lcg~r~e 243 (439)
T KOG0739|consen 207 ---------------------------------------MGESEKLVKNLFEMAREN---KPSIIFIDEIDS-LCGSRSE 243 (439)
T ss_pred ---------------------------------------hccHHHHHHHHHHHHHhc---CCcEEEeehhhh-hccCCCC
Confidence 333345788899986555 999999999996 7774
Q ss_pred ------hHHHHHHHHHHHhhc---CcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHH
Q 007208 281 ------QRTYNLFQKMMKKLL---ASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKM 351 (613)
Q Consensus 281 ------~r~~~~l~~~l~~l~---g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~ 351 (613)
.|+-.-|.-.++... ++|||+|. +|-+.-+|.+|+|+|...|-|++|+...|..+|+.+|.. .
T Consensus 244 nEseasRRIKTEfLVQMqGVG~d~~gvLVLgA-----TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~-t-- 315 (439)
T KOG0739|consen 244 NESEASRRIKTEFLVQMQGVGNDNDGVLVLGA-----TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD-T-- 315 (439)
T ss_pred CchHHHHHHHHHHHHhhhccccCCCceEEEec-----CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCC-C--
Confidence 223333333344443 67999995 677788999999999999999999999999999988743 1
Q ss_pred hhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHH
Q 007208 352 MQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVS 399 (613)
Q Consensus 352 ~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s 399 (613)
.|.+.-.|+..+.....+|++.+|--+|..|+.
T Consensus 316 ---------------p~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 316 ---------------PHVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred ---------------ccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 223333444444444444666666555555543
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=5.3e-19 Score=205.76 Aligned_cols=260 Identities=19% Similarity=0.259 Sum_probs=189.9
Q ss_pred CCChHHHHHHHHHcccCC-------CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecch
Q 007208 41 AVTPEKMEKELLRQIVDG-------RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPA 113 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~-------~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~ 113 (613)
.++.+.|.+.+..- -+. +.-.++|+++.++ |.+|..|.+.+..+++++++.+... + ..+++|||+||+
T Consensus 422 ~v~~~df~~Al~~v-~ps~~~~~~~~~~~~~~~di~g~--~~~k~~l~~~v~~~~~~~~~~~~~g-~-~~~~giLL~Gpp 496 (733)
T TIGR01243 422 KVTMKDFMEALKMV-EPSAIREVLVEVPNVRWSDIGGL--EEVKQELREAVEWPLKHPEIFEKMG-I-RPPKGVLLFGPP 496 (733)
T ss_pred cccHHHHHHHHhhc-cccccchhhccccccchhhcccH--HHHHHHHHHHHHhhhhCHHHHHhcC-C-CCCceEEEECCC
Confidence 45666666655421 111 1226799999999 9999999999999999998743322 2 345679999999
Q ss_pred hHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCC
Q 007208 114 ELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQG 193 (613)
Q Consensus 114 e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 193 (613)
++++++||||||+++++.++.++..++..+| .|.
T Consensus 497 GtGKT~lakalA~e~~~~fi~v~~~~l~~~~---vGe------------------------------------------- 530 (733)
T TIGR01243 497 GTGKTLLAKAVATESGANFIAVRGPEILSKW---VGE------------------------------------------- 530 (733)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEehHHHhhcc---cCc-------------------------------------------
Confidence 9999999999999999999999988775332 111
Q ss_pred CCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccc
Q 007208 194 SGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDV 273 (613)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDi 273 (613)
....++.+|+ .+...+|+||||||+
T Consensus 531 ----------------------------------------------------se~~i~~~f~---~A~~~~p~iifiDEi 555 (733)
T TIGR01243 531 ----------------------------------------------------SEKAIREIFR---KARQAAPAIIFFDEI 555 (733)
T ss_pred ----------------------------------------------------HHHHHHHHHH---HHHhcCCEEEEEECh
Confidence 1123444554 455669999999999
Q ss_pred hhhhhhh---------hHHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHH
Q 007208 274 DKLIFKS---------QRTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVS 340 (613)
Q Consensus 274 D~~l~~s---------~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~I 340 (613)
|.+...+ ++.+..|...++.+. .+|+|||+ +|+++.+|.++.+ +|+..|+|++|+.++|.+|
T Consensus 556 d~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~a-----Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 556 DAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA-----TNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred hhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEe-----CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 9987543 356666666677543 57888886 7788999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCC-------ccc---
Q 007208 341 WKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNED-------TDY--- 410 (613)
Q Consensus 341 lk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~-------~~~--- 410 (613)
|+.++.. .-...+++...|+..|.+ |++++|+.++..|...++..... ...
T Consensus 631 ~~~~~~~----------------~~~~~~~~l~~la~~t~g---~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~ 691 (733)
T TIGR01243 631 FKIHTRS----------------MPLAEDVDLEELAEMTEG---YTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEE 691 (733)
T ss_pred HHHHhcC----------------CCCCccCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHhhhccchhhhccccc
Confidence 9876421 112345667777777777 99999999999888777653211 000
Q ss_pred CCCceeechhhHHhhhhhhh
Q 007208 411 RNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 411 ~~~~l~is~~sl~~al~~~q 430 (613)
......|++++|..|+..++
T Consensus 692 ~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 692 FLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred ccccCcccHHHHHHHHHHcC
Confidence 11235799999999998554
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=1.6e-18 Score=192.28 Aligned_cols=242 Identities=15% Similarity=0.218 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHH---hhcCcEEEEeeeeccCCCCccccchHhhccCCc
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMK---KLLASVLILGSRIVDLSNDQREVDGRVTALFPY 325 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~---~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~ 325 (613)
.+++| +.+......+|.|++|+|+..|+. ...+...|+.+.. ..+..+++++. ...++..+.+.+ .
T Consensus 67 p~~al-~~i~~~~~~~~~~~vl~d~h~~~~-~~~~~r~l~~l~~~~~~~~~~~i~~~~--------~~~~p~el~~~~-~ 135 (489)
T CHL00195 67 PLQAL-EFIEKLTPETPALFLLKDFNRFLN-DISISRKLRNLSRILKTQPKTIIIIAS--------ELNIPKELKDLI-T 135 (489)
T ss_pred HHHHH-HHHHhcCCCCCcEEEEecchhhhc-chHHHHHHHHHHHHHHhCCCEEEEEcC--------CCCCCHHHHhce-e
Confidence 45555 344445445689999999999873 3334444554443 33455667763 245667777754 5
Q ss_pred eEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcC
Q 007208 326 NIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNN 405 (613)
Q Consensus 326 ~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~ 405 (613)
.+++++|+.++..++++...... ...++..++..+..+-.+++..+++.++..|+..+
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~------------------~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~---- 193 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSL------------------NIKIDSELLENLTRACQGLSLERIRRVLSKIIATY---- 193 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhc------------------CCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----
Confidence 78999999999998886543210 11233344444444444488888887776655332
Q ss_pred CCcccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhcCCCC
Q 007208 406 EDTDYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAAAPN 485 (613)
Q Consensus 406 ~~~~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~ 485 (613)
+. ++.+++..-++ ++.
T Consensus 194 -------~~--~~~~~~~~i~~----------------~k~--------------------------------------- 209 (489)
T CHL00195 194 -------KT--IDENSIPLILE----------------EKK--------------------------------------- 209 (489)
T ss_pred -------CC--CChhhHHHHHH----------------HHH---------------------------------------
Confidence 11 33334433332 000
Q ss_pred CCCCCCcccccCCCCCCCCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceee
Q 007208 486 KDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILL 565 (613)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL 565 (613)
+... ..+++....++++|+||||++.+|+.+.+.... ++..+...|+.+++||||
T Consensus 210 --------------------q~~~--~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL 264 (489)
T CHL00195 210 --------------------QIIS--QTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLL 264 (489)
T ss_pred --------------------HHHh--hhccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEE
Confidence 0000 113444445678899999999999999876543 345556788999999999
Q ss_pred ecCCCCCchhhhhhhHHhhCCceeec----cCCCcchHHHHHHHHHHHHhh
Q 007208 566 FGPPGLGKQCWPRPLPKRLGQASLMS----PCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 566 ~GPPGtGKT~lAkAiA~e~g~~fi~~----v~~~~lge~e~~Ir~IF~~A~ 612 (613)
|||||||||++|+++|+++++||+.. +.+.++|+++++++++|+.|.
T Consensus 265 ~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~ 315 (489)
T CHL00195 265 VGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE 315 (489)
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH
Confidence 99999999999999999999999843 345689999999999999875
No 24
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.3e-19 Score=190.77 Aligned_cols=240 Identities=18% Similarity=0.274 Sum_probs=183.4
Q ss_pred HHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCC
Q 007208 51 LLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEA 130 (613)
Q Consensus 51 l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a 130 (613)
+...|.+-+.++|+|++.-.- |+.|++|-+-+- .||.|. ||++-=-..+++|||-||++.++++||||.|-|.|+
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 455677777889999999999 999999999886 688876 677655568899999999999999999999999999
Q ss_pred eEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCc
Q 007208 131 KLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHP 210 (613)
Q Consensus 131 ~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (613)
+|.---.+.|- -| ++|
T Consensus 364 PFF~~sGSEFd--------------------------Em--~VG------------------------------------ 379 (752)
T KOG0734|consen 364 PFFYASGSEFD--------------------------EM--FVG------------------------------------ 379 (752)
T ss_pred CeEeccccchh--------------------------hh--hhc------------------------------------
Confidence 98655444442 11 111
Q ss_pred cccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hH
Q 007208 211 ALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QR 282 (613)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r 282 (613)
..-+.++.||. .+-+++|||||||+||.+=.++ ..
T Consensus 380 ----------------------------------vGArRVRdLF~---aAk~~APcIIFIDEiDavG~kR~~~~~~y~kq 422 (752)
T KOG0734|consen 380 ----------------------------------VGARRVRDLFA---AAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQ 422 (752)
T ss_pred ----------------------------------ccHHHHHHHHH---HHHhcCCeEEEEechhhhcccCCccHHHHHHH
Confidence 11235566665 4555899999999999964443 12
Q ss_pred HHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhh
Q 007208 283 TYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNR 358 (613)
Q Consensus 283 ~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~ 358 (613)
..++|...||.+. .+|+|||. +|-++++|++++| +|+.+|.++.|+-.+|.+||+++|..
T Consensus 423 TlNQLLvEmDGF~qNeGiIvigA-----TNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k----------- 486 (752)
T KOG0734|consen 423 TLNQLLVEMDGFKQNEGIIVIGA-----TNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK----------- 486 (752)
T ss_pred HHHHHHHHhcCcCcCCceEEEec-----cCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc-----------
Confidence 3445555566665 47999995 7888999999999 99999999999999999999999742
Q ss_pred hHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhh
Q 007208 359 NHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSI 428 (613)
Q Consensus 359 ~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~ 428 (613)
+....++ |+.-++.+..+|++++++.+|..|.=++.++ +.-.++|++|+.|-..
T Consensus 487 -----i~~~~~V---D~~iiARGT~GFsGAdLaNlVNqAAlkAa~d--------ga~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 487 -----IPLDEDV---DPKIIARGTPGFSGADLANLVNQAALKAAVD--------GAEMVTMKHLEFAKDR 540 (752)
T ss_pred -----CCcccCC---CHhHhccCCCCCchHHHHHHHHHHHHHHHhc--------CcccccHHHHhhhhhh
Confidence 2233344 4555566666799999999999998787653 3445899999988753
No 25
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-19 Score=182.07 Aligned_cols=96 Identities=34% Similarity=0.566 Sum_probs=89.7
Q ss_pred cCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC-
Q 007208 517 PSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP- 595 (613)
Q Consensus 517 ~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~- 595 (613)
+.+.|+|+|.||||++-+|++++|.+++||.|.++|+..|+.||+|+||||||||||||||+|+|+...+.||..+.+.
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 3466799999999999999999999999999999999999999999999999999999999999999999999666664
Q ss_pred ---cchHHHHHHHHHHHHhh
Q 007208 596 ---SLPNGLVRMRRMFELYS 612 (613)
Q Consensus 596 ---~lge~e~~Ir~IF~~A~ 612 (613)
|+|++.+-||++|..|+
T Consensus 226 vqkylgegprmvrdvfrlak 245 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAK 245 (408)
T ss_pred HHHHhccCcHHHHHHHHHHh
Confidence 78999999999999986
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.78 E-value=3.2e-18 Score=190.94 Aligned_cols=237 Identities=16% Similarity=0.249 Sum_probs=174.2
Q ss_pred ccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEE
Q 007208 55 IVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLL 134 (613)
Q Consensus 55 vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~ 134 (613)
+...+..+++|++++.+ ++.|..|.+.+.. +++++. |..-=...++.|||+||+++++++||||||++++++++.
T Consensus 44 ~~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~--~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 118 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSK--FTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 118 (495)
T ss_pred cccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHH--HHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 34566889999999999 9999999987764 788764 222113456779999999999999999999999999999
Q ss_pred eecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccc
Q 007208 135 LDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRR 214 (613)
Q Consensus 135 lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (613)
++..+|...+ .|.+
T Consensus 119 i~~~~~~~~~---~g~~--------------------------------------------------------------- 132 (495)
T TIGR01241 119 ISGSDFVEMF---VGVG--------------------------------------------------------------- 132 (495)
T ss_pred ccHHHHHHHH---hccc---------------------------------------------------------------
Confidence 9887775222 1110
Q ss_pred cCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHH
Q 007208 215 NASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRT 283 (613)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~ 283 (613)
...++.+|+ .+.+.+|+||||||+|.+...+ .+.
T Consensus 133 --------------------------------~~~l~~~f~---~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~ 177 (495)
T TIGR01241 133 --------------------------------ASRVRDLFE---QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQT 177 (495)
T ss_pred --------------------------------HHHHHHHHH---HHHhcCCCEEEEechhhhhhccccCcCCccHHHHHH
Confidence 012334444 4556799999999999976532 123
Q ss_pred HHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007208 284 YNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRN 359 (613)
Q Consensus 284 ~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~ 359 (613)
+..|...++.+. .+|+|||+ +|.++.+++++.+ +|+.+|+|++|+.++|.+||+.++....
T Consensus 178 ~~~lL~~~d~~~~~~~v~vI~a-----Tn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~---------- 242 (495)
T TIGR01241 178 LNQLLVEMDGFGTNTGVIVIAA-----TNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK---------- 242 (495)
T ss_pred HHHHHhhhccccCCCCeEEEEe-----cCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC----------
Confidence 444444455544 46888886 6778899999987 9999999999999999999998864310
Q ss_pred HHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 360 HIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 360 ~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++..+++..+.+ +++++|+.++..|...+..+++ -.|+.++|..|+...
T Consensus 243 ------~~~~~~l~~la~~t~G---~sgadl~~l~~eA~~~a~~~~~--------~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 243 ------LAPDVDLKAVARRTPG---FSGADLANLLNEAALLAARKNK--------TEITMNDIEEAIDRV 295 (495)
T ss_pred ------CCcchhHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHH
Confidence 0123445567777777 9999999999988766654332 348899999999754
No 27
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3e-19 Score=187.84 Aligned_cols=105 Identities=26% Similarity=0.529 Sum_probs=93.2
Q ss_pred hHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 506 EFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 506 e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+.+.+..+|+. ..|++.|+||.|+.++|+.|+|.|.+|+.+|++|++ ..+|++||||+||||||||+||+|||+||+
T Consensus 193 ~Lve~lerdIl~-~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 193 DLVEALERDILQ-RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HHHHHHHHHHhc-cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 555666667664 556899999999999999999999999999999997 578999999999999999999999999999
Q ss_pred Cceee----ccCCCcchHHHHHHHHHHHHhh
Q 007208 586 QASLM----SPCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 586 ~~fi~----~v~~~~lge~e~~Ir~IF~~A~ 612 (613)
..||. .+.+.|-|++|+-||=+|++|+
T Consensus 271 tTFFNVSsstltSKwRGeSEKlvRlLFemAR 301 (491)
T KOG0738|consen 271 TTFFNVSSSTLTSKWRGESEKLVRLLFEMAR 301 (491)
T ss_pred CeEEEechhhhhhhhccchHHHHHHHHHHHH
Confidence 99993 3345689999999999999986
No 28
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.7e-19 Score=179.46 Aligned_cols=94 Identities=32% Similarity=0.541 Sum_probs=88.8
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL---- 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~---- 594 (613)
+.|+|||.||||..++++.|+|.|++||.||+.|..+|+.||+|||||||||||||++|+|+|+..++.||..+.+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999966655
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.|+|++++-||++|++|+
T Consensus 250 kyvgegarmvrelf~mar 267 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMAR 267 (435)
T ss_pred HHhhhhHHHHHHHHHHhc
Confidence 388999999999999986
No 29
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.77 E-value=4.7e-18 Score=171.13 Aligned_cols=225 Identities=20% Similarity=0.306 Sum_probs=169.9
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcc-cccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEV-SKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~-~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
.++|||+.=+- |..|.. +.-..-.|+.|+. -+| +++.||.+||++.+++|+|||||.+..++||.+.+..
T Consensus 116 ~~it~ddViGq--EeAK~k-crli~~yLenPe~Fg~W------APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~ 186 (368)
T COG1223 116 SDITLDDVIGQ--EEAKRK-CRLIMEYLENPERFGDW------APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE 186 (368)
T ss_pred ccccHhhhhch--HHHHHH-HHHHHHHhhChHHhccc------CcceeEEECCCCccHHHHHHHHhcccCCceEEechHH
Confidence 46889988777 766654 2223346788764 333 4677999999999999999999999999999999987
Q ss_pred chhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccc
Q 007208 140 FSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASAS 219 (613)
Q Consensus 140 ~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (613)
+-...
T Consensus 187 liGeh--------------------------------------------------------------------------- 191 (368)
T COG1223 187 LIGEH--------------------------------------------------------------------------- 191 (368)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 74221
Q ss_pred cccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh---------hHHHHHHHHH
Q 007208 220 ANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS---------QRTYNLFQKM 290 (613)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s---------~r~~~~l~~~ 290 (613)
.+|.-..+..||+ .+++.+|||+|||++|.+.-.+ .++++.|...
T Consensus 192 -----------------------VGdgar~Ihely~---rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe 245 (368)
T COG1223 192 -----------------------VGDGARRIHELYE---RARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE 245 (368)
T ss_pred -----------------------hhhHHHHHHHHHH---HHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh
Confidence 1122345666666 4566699999999999976443 4577777777
Q ss_pred HHhhc--CcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 007208 291 MKKLL--ASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSAN 368 (613)
Q Consensus 291 l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~ 368 (613)
||.+- .+|+.|++ +|.++-+|.+++.+|..+||+.+|++++|+.|++.+++. ..+ --
T Consensus 246 lDgi~eneGVvtIaa-----TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~----~Pl------------pv 304 (368)
T COG1223 246 LDGIKENEGVVTIAA-----TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK----FPL------------PV 304 (368)
T ss_pred ccCcccCCceEEEee-----cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh----CCC------------cc
Confidence 77665 46877775 778899999999999999999999999999999987643 221 22
Q ss_pred CCCchhhhhhcccCcccchhhH-HHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhh
Q 007208 369 DLDCDDLDSINVADTMVLGNYI-EEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLS 427 (613)
Q Consensus 369 dl~c~dLa~l~~~d~~~~~~~i-e~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~ 427 (613)
+.....|+..+.+ +++++| |.+++.|++.++.... =.|+.+||+.|+.
T Consensus 305 ~~~~~~~~~~t~g---~SgRdikekvlK~aLh~Ai~ed~--------e~v~~edie~al~ 353 (368)
T COG1223 305 DADLRYLAAKTKG---MSGRDIKEKVLKTALHRAIAEDR--------EKVEREDIEKALK 353 (368)
T ss_pred ccCHHHHHHHhCC---CCchhHHHHHHHHHHHHHHHhch--------hhhhHHHHHHHHH
Confidence 3344555666666 999998 8889999999986443 2488899999997
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.3e-19 Score=180.07 Aligned_cols=99 Identities=31% Similarity=0.566 Sum_probs=89.4
Q ss_pred CCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc
Q 007208 513 PEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP 592 (613)
Q Consensus 513 ~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v 592 (613)
.+.|-.+.|+|.|+||.||+..|+.|+|.|.+|+++|.+|.+ +..|++||||||||||||+.||+|+|+|++-.||++.
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 444567888999999999999999999999999999999996 5689999999999999999999999999999999433
Q ss_pred CC----CcchHHHHHHHHHHHHhh
Q 007208 593 CL----PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 593 ~~----~~lge~e~~Ir~IF~~A~ 612 (613)
++ .|+|++++-|+++|++|+
T Consensus 199 SSDLvSKWmGESEkLVknLFemAR 222 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMAR 222 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHH
Confidence 32 489999999999999986
No 31
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.76 E-value=1.1e-17 Score=183.32 Aligned_cols=234 Identities=17% Similarity=0.266 Sum_probs=175.0
Q ss_pred CcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 60 ESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 60 ~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
.-.+||+++..+ |..+..|.+++-.+|.++++.+... + ..+++|||+||+++++++||||+|+++++.++.++.++
T Consensus 177 ~p~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g-i-~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 177 APLESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG-I-KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC-C-CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 345899999999 9999999999999999998644322 2 34567999999999999999999999999998888776
Q ss_pred chhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccc
Q 007208 140 FSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASAS 219 (613)
Q Consensus 140 ~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (613)
|..++ .|
T Consensus 253 L~~k~---~G---------------------------------------------------------------------- 259 (438)
T PTZ00361 253 LIQKY---LG---------------------------------------------------------------------- 259 (438)
T ss_pred hhhhh---cc----------------------------------------------------------------------
Confidence 64222 00
Q ss_pred cccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHHH
Q 007208 220 ANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKMM 291 (613)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~l 291 (613)
.....++.+|+. +.+.+|+||||||+|.++..+ .+....+..+|
T Consensus 260 -------------------------e~~~~vr~lF~~---A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL 311 (438)
T PTZ00361 260 -------------------------DGPKLVRELFRV---AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELL 311 (438)
T ss_pred -------------------------hHHHHHHHHHHH---HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Confidence 111234555554 455799999999999987542 12222233333
Q ss_pred ---Hhh--cCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007208 292 ---KKL--LASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEV 364 (613)
Q Consensus 292 ---~~l--~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~v 364 (613)
+.+ .++|.||++ +|+.+.++.++.+ +|+.+|+|++|+.++|.+||+.++.. +
T Consensus 312 ~~Ldg~~~~~~V~VI~A-----TNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k-~--------------- 370 (438)
T PTZ00361 312 NQLDGFDSRGDVKVIMA-----TNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK-M--------------- 370 (438)
T ss_pred HHHhhhcccCCeEEEEe-----cCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc-C---------------
Confidence 433 246777775 5677889999876 99999999999999999999987642 1
Q ss_pred hhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhh
Q 007208 365 LSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 365 L~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q 430 (613)
-...+++..+++..+.+ +++++|..++..|...++... +..|+.+||..|++..+
T Consensus 371 ~l~~dvdl~~la~~t~g---~sgAdI~~i~~eA~~~Alr~~--------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 371 TLAEDVDLEEFIMAKDE---LSGADIKAICTEAGLLALRER--------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred CCCcCcCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhc--------CCccCHHHHHHHHHHHH
Confidence 12345667777777777 999999999999988887643 34599999999998543
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.75 E-value=2.6e-17 Score=182.90 Aligned_cols=260 Identities=15% Similarity=0.263 Sum_probs=178.0
Q ss_pred CCCCcccccccccccccHHHHHHHHHHHHhhcCCCccc-ccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEe
Q 007208 57 DGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVS-KYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLL 135 (613)
Q Consensus 57 ~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~-k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~l 135 (613)
.-+.-+++|+++..+ +..+..|..++..++.|+++. +|. + ...++|||+||++++++++|||+|++++.++..
T Consensus 173 ~~~~p~v~~~dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~g--l-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~- 246 (512)
T TIGR03689 173 LEEVPDVTYADIGGL--DSQIEQIRDAVELPFLHPELYREYD--L-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA- 246 (512)
T ss_pred eecCCCCCHHHcCCh--HHHHHHHHHHHHHHhhCHHHHHhcc--C-CCCcceEEECCCCCcHHHHHHHHHHhhcccccc-
Confidence 345558999999999 999999999999999999872 333 3 335679999999999999999999999766432
Q ss_pred ecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcccccc
Q 007208 136 DVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRN 215 (613)
Q Consensus 136 D~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (613)
+. +... . ++. . ++.++
T Consensus 247 ~~-----------~~~~---~---------------fl~-v-----------------~~~eL----------------- 262 (512)
T TIGR03689 247 ET-----------GDKS---Y---------------FLN-I-----------------KGPEL----------------- 262 (512)
T ss_pred cc-----------CCce---e---------------EEe-c-----------------cchhh-----------------
Confidence 00 0000 0 000 0 00000
Q ss_pred CccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhh-cCCCEEEEEccchhhhhhh---------hHHHH
Q 007208 216 ASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVS-KTSPIVVYLRDVDKLIFKS---------QRTYN 285 (613)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s-~~~P~IL~idDiD~~l~~s---------~r~~~ 285 (613)
...|..+....++.+|+.+.+.+ ..+|+||||||+|.++..+ .+++.
T Consensus 263 -----------------------l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~ 319 (512)
T TIGR03689 263 -----------------------LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVP 319 (512)
T ss_pred -----------------------cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHH
Confidence 01122233345677777766543 3689999999999987543 13556
Q ss_pred HHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 007208 286 LFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHI 361 (613)
Q Consensus 286 ~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I 361 (613)
.|...|+.+. ++|+|||+ +|+++.+|.++.| +|+.+|+|++|+.++|.+||+.++..+... ..+ +
T Consensus 320 ~LL~~LDgl~~~~~ViVI~A-----TN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l---~~~---l 388 (512)
T TIGR03689 320 QLLSELDGVESLDNVIVIGA-----SNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL---DAD---L 388 (512)
T ss_pred HHHHHhcccccCCceEEEec-----cCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc---hHH---H
Confidence 6677777665 57888885 6778999999998 999999999999999999999998754321 111 1
Q ss_pred HHHhhcCCCCchhhhhhccc-----------------------------CcccchhhHHHHHHHHHHhhhhcCCCcccCC
Q 007208 362 MEVLSANDLDCDDLDSINVA-----------------------------DTMVLGNYIEEIVVSAVSYHLMNNEDTDYRN 412 (613)
Q Consensus 362 ~~vL~~~dl~c~dLa~l~~~-----------------------------d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~ 412 (613)
....+....+++.+|.. ...++++.|..||..|-..++...-. .
T Consensus 389 ---~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----~ 461 (512)
T TIGR03689 389 ---AEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----G 461 (512)
T ss_pred ---HHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----c
Confidence 12234444444444333 12367999999999998888754321 1
Q ss_pred CceeechhhHHhhhh
Q 007208 413 GKLIISSKSLSHGLS 427 (613)
Q Consensus 413 ~~l~is~~sl~~al~ 427 (613)
+..-|+.++|..|+.
T Consensus 462 ~~~~~~~~~l~~a~~ 476 (512)
T TIGR03689 462 GQVGLRIEHLLAAVL 476 (512)
T ss_pred CCcCcCHHHHHHHHH
Confidence 223588999999996
No 33
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.7e-19 Score=178.56 Aligned_cols=92 Identities=29% Similarity=0.503 Sum_probs=86.0
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----Cc
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL----PS 596 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~----~~ 596 (613)
|.-+|+||||++.++++|+|.|++||.||++|+..|++||+||+|||+||||||+||+|+|++..+.|+..+.+ .|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999965555 37
Q ss_pred chHHHHHHHHHHHHhh
Q 007208 597 LPNGLVRMRRMFELYS 612 (613)
Q Consensus 597 lge~e~~Ir~IF~~A~ 612 (613)
+|++.+-||++|+.|.
T Consensus 260 lGdGpklvRqlF~vA~ 275 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAE 275 (440)
T ss_pred hccchHHHHHHHHHHH
Confidence 8999999999999874
No 34
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.2e-18 Score=172.31 Aligned_cols=107 Identities=24% Similarity=0.482 Sum_probs=96.5
Q ss_pred CchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 504 DNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 504 ~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..+|..++..-.++ +.|.-+|+||||++.++++|.|.|.+|+.|++.|+.+|+.||+|+|+|||||||||++|||.|.+
T Consensus 150 P~eyDsrVkaMevD-ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 150 PSEYDSRVKAMEVD-EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred Chhhhhhcceeeec-cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 34777787776664 45678899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeeccCC-----CcchHHHHHHHHHHHHhh
Q 007208 584 LGQASLMSPCL-----PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 584 ~g~~fi~~v~~-----~~lge~e~~Ir~IF~~A~ 612 (613)
.++.|+ ...+ +|+|.+++-||+.|..|.
T Consensus 229 T~aTFL-KLAgPQLVQMfIGdGAkLVRDAFaLAK 261 (424)
T KOG0652|consen 229 TNATFL-KLAGPQLVQMFIGDGAKLVRDAFALAK 261 (424)
T ss_pred ccchHH-HhcchHHHhhhhcchHHHHHHHHHHhh
Confidence 999999 4555 488999999999999885
No 35
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.1e-17 Score=184.20 Aligned_cols=237 Identities=18% Similarity=0.272 Sum_probs=181.0
Q ss_pred cCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEe
Q 007208 56 VDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLL 135 (613)
Q Consensus 56 v~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~l 135 (613)
-+-.+++|+|+||-.- |..|++|.+-+. .||+|+ +|.+-=.-.++++||+||++++++.||||.|.|.|++|+.+
T Consensus 301 ~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~--~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 301 KNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPE--QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred ccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHH--HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 3367888999999999 999999999887 799987 47666567899999999999999999999999999999999
Q ss_pred ecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcccccc
Q 007208 136 DVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRN 215 (613)
Q Consensus 136 D~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (613)
-.++|..-+ .|.
T Consensus 376 SGSEFvE~~----------------------------~g~---------------------------------------- 387 (774)
T KOG0731|consen 376 SGSEFVEMF----------------------------VGV---------------------------------------- 387 (774)
T ss_pred chHHHHHHh----------------------------ccc----------------------------------------
Confidence 999996322 000
Q ss_pred CccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh---------h---HH
Q 007208 216 ASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS---------Q---RT 283 (613)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s---------~---r~ 283 (613)
..-.++.||.. +.+..|+|||||++|.+-..+ + ..
T Consensus 388 ------------------------------~asrvr~lf~~---ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~t 434 (774)
T KOG0731|consen 388 ------------------------------GASRVRDLFPL---ARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQT 434 (774)
T ss_pred ------------------------------chHHHHHHHHH---hhccCCeEEEecccccccccccccccCCCChHHHHH
Confidence 00145666664 555699999999999965433 1 25
Q ss_pred HHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007208 284 YNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRN 359 (613)
Q Consensus 284 ~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~ 359 (613)
.++|.-.+|.+. ++||++++ +|+++-+|.++.| +|+.+|.|++|+..+|.+||+.++.. .+.
T Consensus 435 lnQll~emDgf~~~~~vi~~a~-----tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~----~~~----- 500 (774)
T KOG0731|consen 435 LNQLLVEMDGFETSKGVIVLAA-----TNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK----KKL----- 500 (774)
T ss_pred HHHHHHHhcCCcCCCcEEEEec-----cCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc----cCC-----
Confidence 566666677654 56899986 7888999999998 99999999999999999999998743 111
Q ss_pred HHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 360 HIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 360 ~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++...|+.++.+ |++++|..++.-|--.+..+.. -.|+..+|.+|++..
T Consensus 501 ------~~e~~dl~~~a~~t~g---f~gadl~n~~neaa~~a~r~~~--------~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 501 ------DDEDVDLSKLASLTPG---FSGADLANLCNEAALLAARKGL--------REIGTKDLEYAIERV 553 (774)
T ss_pred ------CcchhhHHHHHhcCCC---CcHHHHHhhhhHHHHHHHHhcc--------CccchhhHHHHHHHH
Confidence 1122333345556666 8888888888777666654333 348889999999844
No 36
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.72 E-value=1.6e-16 Score=170.68 Aligned_cols=232 Identities=17% Similarity=0.305 Sum_probs=169.8
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+.-.++|++++.. |..+..|.++...++.++++.+... -..+++|||+||+++++++||||+|++.++.++.+...
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g--~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEVG--IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcC--CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 4568899999999 9999999999999999988644321 23456799999999999999999999999998877655
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
++..++ .|
T Consensus 191 ~l~~~~---~g--------------------------------------------------------------------- 198 (364)
T TIGR01242 191 ELVRKY---IG--------------------------------------------------------------------- 198 (364)
T ss_pred HHHHHh---hh---------------------------------------------------------------------
Confidence 543211 00
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKM 290 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~ 290 (613)
.....++.+|+ .+...+|+||||||+|.+...+ .+....|..+
T Consensus 199 --------------------------~~~~~i~~~f~---~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~l 249 (364)
T TIGR01242 199 --------------------------EGARLVREIFE---LAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 249 (364)
T ss_pred --------------------------HHHHHHHHHHH---HHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHH
Confidence 01113344444 3445699999999999976432 1122223333
Q ss_pred ---HHhh--cCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007208 291 ---MKKL--LASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIME 363 (613)
Q Consensus 291 ---l~~l--~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~ 363 (613)
++.+ .++|.||++ ++.++.++.++.+ +|...|+|++|+.++|.+||+.++..
T Consensus 250 l~~ld~~~~~~~v~vI~t-----tn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~---------------- 308 (364)
T TIGR01242 250 LAELDGFDPRGNVKVIAA-----TNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK---------------- 308 (364)
T ss_pred HHHhhCCCCCCCEEEEEe-----cCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc----------------
Confidence 3333 257877775 4566788889886 99999999999999999999977532
Q ss_pred HhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhh
Q 007208 364 VLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLS 427 (613)
Q Consensus 364 vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~ 427 (613)
.-...+++..+|+..+.+ +++++|..++..|...++... +-.|+.+||..|+.
T Consensus 309 ~~l~~~~~~~~la~~t~g---~sg~dl~~l~~~A~~~a~~~~--------~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 309 MKLAEDVDLEAIAKMTEG---ASGADLKAICTEAGMFAIREE--------RDYVTMDDFIKAVE 361 (364)
T ss_pred CCCCccCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhC--------CCccCHHHHHHHHH
Confidence 011234667788888887 999999999999988887643 33599999999986
No 37
>CHL00176 ftsH cell division protein; Validated
Probab=99.71 E-value=1.6e-16 Score=181.56 Aligned_cols=238 Identities=17% Similarity=0.250 Sum_probs=172.4
Q ss_pred cccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEE
Q 007208 54 QIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLL 133 (613)
Q Consensus 54 ~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL 133 (613)
.+....+.+++|+++..+ +..+..|.+.+.. |++++. |..--...+++|||+||+++++++||||||++.+++++
T Consensus 171 ~~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~~-lk~~~~--~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i 245 (638)
T CHL00176 171 RFQMEADTGITFRDIAGI--EEAKEEFEEVVSF-LKKPER--FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF 245 (638)
T ss_pred HhhcccCCCCCHHhccCh--HHHHHHHHHHHHH-HhCHHH--HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 344567888999999999 9999999888764 888764 33322455778999999999999999999999999999
Q ss_pred EeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcccc
Q 007208 134 LLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALR 213 (613)
Q Consensus 134 ~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (613)
.++..+|...+ .|.
T Consensus 246 ~is~s~f~~~~---~g~--------------------------------------------------------------- 259 (638)
T CHL00176 246 SISGSEFVEMF---VGV--------------------------------------------------------------- 259 (638)
T ss_pred eccHHHHHHHh---hhh---------------------------------------------------------------
Confidence 98887774221 000
Q ss_pred ccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------h---H
Q 007208 214 RNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------Q---R 282 (613)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~---r 282 (613)
....++ +++..+.+.+|+||||||+|.+...+ . +
T Consensus 260 --------------------------------~~~~vr---~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 304 (638)
T CHL00176 260 --------------------------------GAARVR---DLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQ 304 (638)
T ss_pred --------------------------------hHHHHH---HHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHH
Confidence 001223 34445667899999999999976431 1 2
Q ss_pred HHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhh
Q 007208 283 TYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNR 358 (613)
Q Consensus 283 ~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~ 358 (613)
....|...++.+. .+|+|||+ +++++.++.++.+ +|+.+|.|++|+.++|.+||+.++....
T Consensus 305 ~L~~LL~~~dg~~~~~~ViVIaa-----TN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~--------- 370 (638)
T CHL00176 305 TLNQLLTEMDGFKGNKGVIVIAA-----TNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK--------- 370 (638)
T ss_pred HHHHHHhhhccccCCCCeeEEEe-----cCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---------
Confidence 3333333444443 46888886 6677888899987 8999999999999999999999875410
Q ss_pred hHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 359 NHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 359 ~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++...|+..+.+ +++++|..+|..|.-.+...+ +-.|+.++|..|+...
T Consensus 371 -------~~~d~~l~~lA~~t~G---~sgaDL~~lvneAal~a~r~~--------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 371 -------LSPDVSLELIARRTPG---FSGADLANLLNEAAILTARRK--------KATITMKEIDTAIDRV 423 (638)
T ss_pred -------cchhHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHhC--------CCCcCHHHHHHHHHHH
Confidence 0123345566666666 999999999998876654332 3358999999999754
No 38
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-16 Score=158.46 Aligned_cols=231 Identities=18% Similarity=0.316 Sum_probs=173.1
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+.-+||+.+.+.. +-.|+...+++-.+|.|.++.+... -..++++||+||++++++|||||.||+--|.|+-+..+
T Consensus 148 ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qig--idpprgvllygppg~gktml~kava~~t~a~firvvgs 223 (408)
T KOG0727|consen 148 EKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQIG--IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 223 (408)
T ss_pred CCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHhC--CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccH
Confidence 4567899999999 9999999999999999999855442 34678899999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
.|.+|+ .|+..
T Consensus 224 efvqky---lgegp------------------------------------------------------------------ 234 (408)
T KOG0727|consen 224 EFVQKY---LGEGP------------------------------------------------------------------ 234 (408)
T ss_pred HHHHHH---hccCc------------------------------------------------------------------
Confidence 999887 23321
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLF 287 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l 287 (613)
+.++.+|.+ +.+.+|+|||||++|.+..++ +|+.--|
T Consensus 235 -----------------------------rmvrdvfrl---akenapsiifideidaiatkrfdaqtgadrevqril~el 282 (408)
T KOG0727|consen 235 -----------------------------RMVRDVFRL---AKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIEL 282 (408)
T ss_pred -----------------------------HHHHHHHHH---HhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHH
Confidence 123444444 555799999999999988775 3443334
Q ss_pred HHHHHhhcC--cE-EEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007208 288 QKMMKKLLA--SV-LILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIM 362 (613)
Q Consensus 288 ~~~l~~l~g--~V-lIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~ 362 (613)
...++.+.. +| +|++ +|+.+.++.++.+ +++.+||+++|+--|++-+|...- ++.|
T Consensus 283 lnqmdgfdq~~nvkvima------tnradtldpallrpgrldrkiefplpdrrqkrlvf~tit--------skm~----- 343 (408)
T KOG0727|consen 283 LNQMDGFDQTTNVKVIMA------TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT--------SKMN----- 343 (408)
T ss_pred HHhccCcCcccceEEEEe------cCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh--------hccc-----
Confidence 444455543 56 6666 5566778888887 899999999999999988887542 2323
Q ss_pred HHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhh
Q 007208 363 EVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLS 427 (613)
Q Consensus 363 ~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~ 427 (613)
...+++.+++-..--+ +++++|..|+..|=.++... ++-++..+||+.|..
T Consensus 344 ---ls~~vdle~~v~rpdk---is~adi~aicqeagm~avr~--------nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 344 ---LSDEVDLEDLVARPDK---ISGADINAICQEAGMLAVRE--------NRYVVLQKDFEKAYK 394 (408)
T ss_pred ---CCcccCHHHHhcCccc---cchhhHHHHHHHHhHHHHHh--------cceeeeHHHHHHHHH
Confidence 2234455554443334 78888988888887777653 345788899999986
No 39
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.3e-17 Score=178.83 Aligned_cols=98 Identities=31% Similarity=0.446 Sum_probs=88.1
Q ss_pred CccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC
Q 007208 515 VIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL 594 (613)
Q Consensus 515 ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~ 594 (613)
+.+....+|+|+|+-|.++.|++|+|+|.+ |+.|+.|.++|=+.|+||||.||||||||+||||+|.|+++|||....+
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS 371 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS 371 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc
Confidence 334444589999999999999999999999 9999999999999999999999999999999999999999999954444
Q ss_pred ----CcchHHHHHHHHHHHHhhC
Q 007208 595 ----PSLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 595 ----~~lge~e~~Ir~IF~~A~r 613 (613)
+++|.++++||++|+.|++
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~ 394 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKA 394 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHh
Confidence 3789999999999998863
No 40
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.4e-17 Score=187.46 Aligned_cols=94 Identities=30% Similarity=0.500 Sum_probs=85.5
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC--
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP-- 595 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~-- 595 (613)
..+++|+|+|+.|.+++|++|+|+|.+ |++|+.|..+|.+.|+|+||+||||||||+||+|+|.|+|+||+ .+++.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~-svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-SVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCcee-eechHHH
Confidence 445689999999999999999999999 99999999999999999999999999999999999999999999 55554
Q ss_pred ---cchHHHHHHHHHHHHhhC
Q 007208 596 ---SLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 596 ---~lge~e~~Ir~IF~~A~r 613 (613)
+.|.+..+||.+|..|++
T Consensus 381 vE~~~g~~asrvr~lf~~ar~ 401 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARK 401 (774)
T ss_pred HHHhcccchHHHHHHHHHhhc
Confidence 355668899999999874
No 41
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.1e-17 Score=164.44 Aligned_cols=93 Identities=25% Similarity=0.476 Sum_probs=86.5
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL---- 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~---- 594 (613)
..|+.+|+.|||++.++++|+|.+++|.+||++|..+|+..|+|+|||||||||||++|+|+|....+.|| .+++
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~fi-rvsgselv 218 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI-RVSGSELV 218 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEE-EechHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999 4544
Q ss_pred -CcchHHHHHHHHHHHHhh
Q 007208 595 -PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 -~~lge~e~~Ir~IF~~A~ 612 (613)
.|+|++.+-||++|-+|+
T Consensus 219 qk~igegsrmvrelfvmar 237 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAR 237 (404)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 378999999999999886
No 42
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.67 E-value=5.9e-16 Score=187.08 Aligned_cols=238 Identities=15% Similarity=0.210 Sum_probs=151.7
Q ss_pred CCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCccccccc
Q 007208 102 PASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQ 181 (613)
Q Consensus 102 ~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~ 181 (613)
..+++|||.||+|+++++||||||.+.+++|+.+...+|..++ ++. +- .+-. + +|...-+..
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~---~~~------~~-------~d~i-~-iges~~~~~ 1689 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNK---PKG------FL-------IDDI-D-IDDSDDIDD 1689 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcc---ccc------cc-------cccc-c-ccccccccc
Confidence 5688999999999999999999999999999999999987432 000 00 0000 0 010000000
Q ss_pred ccccccccccCCCCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchh--HHHHHHHHHHHHHh
Q 007208 182 KEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFD--EKLLIQSIYRVLCY 259 (613)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d--ek~~lqaL~evl~s 259 (613)
...+.| |+...--..+ +. ...+.+. ....|+.+|+.+..
T Consensus 1690 ----~~~~~~--------------------------------~~~~e~~e~~-n~--~~~~m~~~e~~~rIr~lFelARk 1730 (2281)
T CHL00206 1690 ----SDDIDR--------------------------------DLDTELLTMM-NA--LTMDMMPKIDRFYITLQFELAKA 1730 (2281)
T ss_pred ----cccccc--------------------------------ccchhhhhhc-ch--hhhhhhhhhhHHHHHHHHHHHHH
Confidence 000000 0000000000 00 0011111 12347777776544
Q ss_pred hhcCCCEEEEEccchhhhhhhhH--HHHHHHHHHHhh-----cCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeC
Q 007208 260 VSKTSPIVVYLRDVDKLIFKSQR--TYNLFQKMMKKL-----LASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIR 330 (613)
Q Consensus 260 ~s~~~P~IL~idDiD~~l~~s~r--~~~~l~~~l~~l-----~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~ 330 (613)
.+||||||||||.+-....+ ...+|...|+.. ..+|+|||+ +|.++.+|.++.+ ||+.+|+|+
T Consensus 1731 ---~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAA-----TNRPD~LDPALLRPGRFDR~I~Ir 1802 (2281)
T CHL00206 1731 ---MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIAS-----THIPQKVDPALIAPNKLNTCIKIR 1802 (2281)
T ss_pred ---CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEe-----CCCcccCCHhHcCCCCCCeEEEeC
Confidence 59999999999996544322 355666666643 246999996 8899999999998 999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCccc
Q 007208 331 PPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDY 410 (613)
Q Consensus 331 ~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~ 410 (613)
+|+..+|.+++..++.. +... +....++...++..|.+ ++++|++.+|..|...++.+++
T Consensus 1803 ~Pd~p~R~kiL~ILl~t--kg~~-----------L~~~~vdl~~LA~~T~G---fSGADLanLvNEAaliAirq~k---- 1862 (2281)
T CHL00206 1803 RLLIPQQRKHFFTLSYT--RGFH-----------LEKKMFHTNGFGSITMG---SNARDLVALTNEALSISITQKK---- 1862 (2281)
T ss_pred CCCchhHHHHHHHHHhh--cCCC-----------CCcccccHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcCC----
Confidence 99999999998865411 1000 11112345566766666 9999999999999999887544
Q ss_pred CCCceeechhhHHhhhhh
Q 007208 411 RNGKLIISSKSLSHGLSI 428 (613)
Q Consensus 411 ~~~~l~is~~sl~~al~~ 428 (613)
-+|..++|..|+..
T Consensus 1863 ----s~Id~~~I~~Al~R 1876 (2281)
T CHL00206 1863 ----SIIDTNTIRSALHR 1876 (2281)
T ss_pred ----CccCHHHHHHHHHH
Confidence 35788899999863
No 43
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=3.7e-15 Score=173.61 Aligned_cols=240 Identities=18% Similarity=0.226 Sum_probs=137.5
Q ss_pred HHHHhhhcCCCEEEEEccchhhhhhh------hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEE
Q 007208 255 RVLCYVSKTSPIVVYLRDVDKLIFKS------QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIE 328 (613)
Q Consensus 255 evl~s~s~~~P~IL~idDiD~~l~~s------~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~Ie 328 (613)
+++.++.+..|+||||||++.++... .+..+.|+..++ .|.+.+||..+.+-.+..-..+.++.++|. .|+
T Consensus 265 ~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~ 341 (731)
T TIGR02639 265 AVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KID 341 (731)
T ss_pred HHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEE
Confidence 44445556689999999999976431 235566666555 367888997554333444567899999996 799
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCc
Q 007208 329 IRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDT 408 (613)
Q Consensus 329 I~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~ 408 (613)
|+.|+.+++.+||+.....-... .++..--+++. .+.+|+..-..|. +.+...-.++..|.+..-++...
T Consensus 342 v~~p~~~~~~~il~~~~~~~e~~----~~v~i~~~al~----~~~~ls~ryi~~r-~~P~kai~lld~a~a~~~~~~~~- 411 (731)
T TIGR02639 342 VGEPSIEETVKILKGLKEKYEEF----HHVKYSDEALE----AAVELSARYINDR-FLPDKAIDVIDEAGASFRLRPKA- 411 (731)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhc----cCcccCHHHHH----HHHHhhhcccccc-cCCHHHHHHHHHhhhhhhcCccc-
Confidence 99999999999999765431110 01000000000 0111221111111 22333334455555544332111
Q ss_pred ccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhcCCCCCCC
Q 007208 409 DYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAAAPNKDG 488 (613)
Q Consensus 409 ~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (613)
..+..++.+++...++.+-...-.. +. ..+
T Consensus 412 ---~~~~~v~~~~i~~~i~~~tgiP~~~-----~~------------------------------~~~------------ 441 (731)
T TIGR02639 412 ---KKKANVSVKDIENVVAKMAHIPVKT-----VS------------------------------VDD------------ 441 (731)
T ss_pred ---ccccccCHHHHHHHHHHHhCCChhh-----hh------------------------------hHH------------
Confidence 1245688899999987542110000 00 000
Q ss_pred CCCcccccCCCCCCCCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCC----CCCCcee
Q 007208 489 DSSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLL----KPCRGIL 564 (613)
Q Consensus 489 ~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i----~~~~giL 564 (613)
......+++.+ ...|.|++++++.|.+.+.. ...|+ +|...+|
T Consensus 442 ------------~~~l~~l~~~l-------------~~~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~l 488 (731)
T TIGR02639 442 ------------REKLKNLEKNL-------------KAKIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFL 488 (731)
T ss_pred ------------HHHHHHHHHHH-------------hcceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEE
Confidence 00011222222 23566889999888887754 11222 2223478
Q ss_pred eecCCCCCchhhhhhhHHhhCCceee
Q 007208 565 LFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 565 L~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
|+||||||||.+|+++|..++.+|+.
T Consensus 489 f~Gp~GvGKT~lA~~la~~l~~~~~~ 514 (731)
T TIGR02639 489 FTGPTGVGKTELAKQLAEALGVHLER 514 (731)
T ss_pred EECCCCccHHHHHHHHHHHhcCCeEE
Confidence 99999999999999999999998874
No 44
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.65 E-value=2.2e-15 Score=173.07 Aligned_cols=240 Identities=14% Similarity=0.217 Sum_probs=174.2
Q ss_pred HHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCe
Q 007208 52 LRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAK 131 (613)
Q Consensus 52 ~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~ 131 (613)
......+..+.++|+++-.+ +..+..|...+.. ++.++... .--....+.|||+||+++++++|||++|++.+++
T Consensus 138 ~~~~~~~~~~~~~~~di~g~--~~~~~~l~~i~~~-~~~~~~~~--~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 138 KARMLTEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSRFQ--KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred cccccCchhhhCcHHHHcCH--HHHHHHHHHHHHH-hhCHHHHH--hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34455667889999999988 8999999887765 55544321 1112345679999999999999999999999999
Q ss_pred EEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcc
Q 007208 132 LLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPA 211 (613)
Q Consensus 132 LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (613)
++.++..+|...+ .|.
T Consensus 213 f~~is~~~~~~~~---~g~------------------------------------------------------------- 228 (644)
T PRK10733 213 FFTISGSDFVEMF---VGV------------------------------------------------------------- 228 (644)
T ss_pred EEEEehHHhHHhh---hcc-------------------------------------------------------------
Confidence 9999988775221 000
Q ss_pred ccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------
Q 007208 212 LRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS----------- 280 (613)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s----------- 280 (613)
....++.+|+ .+...+|+||||||+|.+..++
T Consensus 229 ----------------------------------~~~~~~~~f~---~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~ 271 (644)
T PRK10733 229 ----------------------------------GASRVRDMFE---QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDER 271 (644)
T ss_pred ----------------------------------cHHHHHHHHH---HHHhcCCcEEEehhHhhhhhccCCCCCCCchHH
Confidence 0012344444 4455699999999999975432
Q ss_pred hHHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhh
Q 007208 281 QRTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKD 356 (613)
Q Consensus 281 ~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~ 356 (613)
.+..+.|...++.+. .+|+|||+ +|.++.+|.++.+ +|+.+|+|++|+.++|.+||+.++.+. .
T Consensus 272 ~~~ln~lL~~mdg~~~~~~vivIaa-----TN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~----~--- 339 (644)
T PRK10733 272 EQTLNQMLVEMDGFEGNEGIIVIAA-----TNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV----P--- 339 (644)
T ss_pred HHHHHHHHHhhhcccCCCCeeEEEe-----cCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC----C---
Confidence 124444545556554 36888886 7788999999997 999999999999999999999886431 0
Q ss_pred hhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 357 NRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 357 N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++...|+..+.+ |++++|..+|..|..++... ++-.|+.++|..|+...
T Consensus 340 ---------l~~~~d~~~la~~t~G---~sgadl~~l~~eAa~~a~r~--------~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 340 ---------LAPDIDAAIIARGTPG---FSGADLANLVNEAALFAARG--------NKRVVSMVEFEKAKDKI 392 (644)
T ss_pred ---------CCCcCCHHHHHhhCCC---CCHHHHHHHHHHHHHHHHHc--------CCCcccHHHHHHHHHHH
Confidence 1234555556666666 99999999999998888653 33458899999998643
No 45
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.6e-15 Score=150.75 Aligned_cols=229 Identities=15% Similarity=0.278 Sum_probs=161.6
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 62 NITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 62 ~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
+-|++-...+ +.....+.+..-.+.|||++++-.- -+.++++||+||+..+++.||+|.|||-.++|+-+..+.+.
T Consensus 143 DStYeMiGgL--d~QIkeIkEVIeLPvKHPELF~aLG--IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 143 DSTYEMIGGL--DKQIKEIKEVIELPVKHPELFEALG--IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred ccHHHHhccH--HHHHHHHHHHHhccccCHHHHHhcC--CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 3467777887 7788889999999999999865432 35667899999999999999999999999999999999988
Q ss_pred hhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccccc
Q 007208 142 LKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASAN 221 (613)
Q Consensus 142 ~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (613)
+|+ -|+.+
T Consensus 219 qk~---igegs--------------------------------------------------------------------- 226 (404)
T KOG0728|consen 219 QKY---IGEGS--------------------------------------------------------------------- 226 (404)
T ss_pred HHH---hhhhH---------------------------------------------------------------------
Confidence 776 23221
Q ss_pred cccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHHHHh
Q 007208 222 ISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKMMKK 293 (613)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~l~~ 293 (613)
+.+++| |.-+.+++|+|||+|+||++=+.+ ++....+.++++.
T Consensus 227 --------------------------rmvrel---fvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq 277 (404)
T KOG0728|consen 227 --------------------------RMVREL---FVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ 277 (404)
T ss_pred --------------------------HHHHHH---HHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh
Confidence 134444 445667899999999999964432 2333344455554
Q ss_pred hc-----CcE-EEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 007208 294 LL-----ASV-LILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVL 365 (613)
Q Consensus 294 l~-----g~V-lIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL 365 (613)
|. -++ +|.+ +|+.+-+|.++.+ +.+.+||+++|+++.|++|||.+-. .|. ..-..|+..|++
T Consensus 278 ldgfeatknikvima------tnridild~allrpgridrkiefp~p~e~ar~~ilkihsr-kmn-l~rgi~l~kiae-- 347 (404)
T KOG0728|consen 278 LDGFEATKNIKVIMA------TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR-KMN-LTRGINLRKIAE-- 347 (404)
T ss_pred ccccccccceEEEEe------ccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh-hhc-hhcccCHHHHHH--
Confidence 43 356 6666 5666778888887 8999999999999999999998732 221 112344444443
Q ss_pred hcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhh
Q 007208 366 SANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSI 428 (613)
Q Consensus 366 ~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~ 428 (613)
.-+|-+++++..+| -.|=.|+|. ..++-++.+||+.|...
T Consensus 348 km~gasgaevk~vc---------------teagm~alr--------errvhvtqedfemav~k 387 (404)
T KOG0728|consen 348 KMPGASGAEVKGVC---------------TEAGMYALR--------ERRVHVTQEDFEMAVAK 387 (404)
T ss_pred hCCCCccchhhhhh---------------hhhhHHHHH--------HhhccccHHHHHHHHHH
Confidence 22344444444444 445556654 23456899999999963
No 46
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.65 E-value=5e-15 Score=157.28 Aligned_cols=186 Identities=12% Similarity=0.164 Sum_probs=131.8
Q ss_pred cccccc--cccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 63 ITFDEF--PYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 63 vsf~~f--pYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
-+|+|. .||+...--. -+.+|+-+.-+.- .++ ..++.+||+||++|+++++|||+|+++|+.++.+++.++
T Consensus 112 ~~f~~~~g~~~~~p~f~d----k~~~hi~kn~l~~--~~i-k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL 184 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMD----KVAVHIAKNFLAL--PNI-KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGEL 184 (413)
T ss_pred cchhhhcCccccCHHHHH----HHHHHHHhhhhhc--cCC-CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHh
Confidence 356666 6676554433 3334544432211 111 455667888999999999999999999999999999888
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
..+|
T Consensus 185 ~sk~---------------------------------------------------------------------------- 188 (413)
T PLN00020 185 ESEN---------------------------------------------------------------------------- 188 (413)
T ss_pred hcCc----------------------------------------------------------------------------
Confidence 6333
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhh--cCCCEEEEEccchhhhhhh--------hHHH-HHHHH
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVS--KTSPIVVYLRDVDKLIFKS--------QRTY-NLFQK 289 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s--~~~P~IL~idDiD~~l~~s--------~r~~-~~l~~ 289 (613)
..+...+|+.+|+.+...+ +.+|+||||||||.++.++ ++++ .+|..
T Consensus 189 ----------------------vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLn 246 (413)
T PLN00020 189 ----------------------AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMN 246 (413)
T ss_pred ----------------------CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHH
Confidence 3333446788888776654 5789999999999977653 2333 45666
Q ss_pred HHHhh--------------cCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhh
Q 007208 290 MMKKL--------------LASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQ 353 (613)
Q Consensus 290 ~l~~l--------------~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~ 353 (613)
++|.. ..+|+||++ +|+++.++.++.| +|+..+ .+|+.++|.+||+.++..|..
T Consensus 247 l~D~p~~v~l~G~w~~~~~~~~V~VIaT-----TNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--- 316 (413)
T PLN00020 247 IADNPTNVSLGGDWREKEEIPRVPIIVT-----GNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--- 316 (413)
T ss_pred HhcCCccccccccccccccCCCceEEEe-----CCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC---
Confidence 65531 346888886 7899999999999 999965 699999999999998876532
Q ss_pred hhhhhhHHHH
Q 007208 354 AKDNRNHIME 363 (613)
Q Consensus 354 ~~~N~~~I~~ 363 (613)
...++..|..
T Consensus 317 ~~~dv~~Lv~ 326 (413)
T PLN00020 317 SREDVVKLVD 326 (413)
T ss_pred CHHHHHHHHH
Confidence 2455555554
No 47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.2e-15 Score=165.66 Aligned_cols=232 Identities=16% Similarity=0.222 Sum_probs=183.5
Q ss_pred CCChHHHHHHHH-------HcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecch
Q 007208 41 AVTPEKMEKELL-------RQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPA 113 (613)
Q Consensus 41 ~~~~~~~e~~l~-------~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~ 113 (613)
-+|-+.|++.|+ |.|---+..++-|++.|.. .+.|++|.+..-.+-|+|.+ |..-.-....+|||+||+
T Consensus 635 lltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~--~~~k~~l~~~i~~P~kyp~i--f~~~plr~~~giLLyGpp 710 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGL--FEAKKVLEEVIEWPSKYPQI--FANCPLRLRTGILLYGPP 710 (952)
T ss_pred cchHHHHHHHHHhcChHHhhhccccccCCCCceecccH--HHHHHHHHHHHhccccchHH--HhhCCcccccceEEECCC
Confidence 678888888774 5566666777999999999 99999999999999999987 556667788899999999
Q ss_pred hHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCC
Q 007208 114 ELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQG 193 (613)
Q Consensus 114 e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 193 (613)
+|+++.||-|+|..++.+++.+-.-.+..|+ -|.|
T Consensus 711 GcGKT~la~a~a~~~~~~fisvKGPElL~Ky---IGaS------------------------------------------ 745 (952)
T KOG0735|consen 711 GCGKTLLASAIASNSNLRFISVKGPELLSKY---IGAS------------------------------------------ 745 (952)
T ss_pred CCcHHHHHHHHHhhCCeeEEEecCHHHHHHH---hccc------------------------------------------
Confidence 9999999999999999999999988776554 2221
Q ss_pred CCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccc
Q 007208 194 SGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDV 273 (613)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDi 273 (613)
+..++.||+ ++.-+.|||||+|+.
T Consensus 746 -----------------------------------------------------Eq~vR~lF~---rA~~a~PCiLFFDEf 769 (952)
T KOG0735|consen 746 -----------------------------------------------------EQNVRDLFE---RAQSAKPCILFFDEF 769 (952)
T ss_pred -----------------------------------------------------HHHHHHHHH---HhhccCCeEEEeccc
Confidence 113445555 555569999999999
Q ss_pred hhhhhhh--------hHHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHH
Q 007208 274 DKLIFKS--------QRTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 274 D~~l~~s--------~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Il 341 (613)
|.+.+++ +|.+++|...||... .+|.|+|. +.+++-+|.++.| +|+..|.-++|++.+|++|+
T Consensus 770 dSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aa-----TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il 844 (952)
T KOG0735|consen 770 DSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAA-----TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEIL 844 (952)
T ss_pred cccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEe-----cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHH
Confidence 9998886 689999999998776 47888885 6678999999998 99999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhh
Q 007208 342 KSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYH 401 (613)
Q Consensus 342 k~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~ 401 (613)
+.+-.. .+.+.+++..-++..+.+ |+++|+..+.-.|--++
T Consensus 845 ~~ls~s----------------~~~~~~vdl~~~a~~T~g---~tgADlq~ll~~A~l~a 885 (952)
T KOG0735|consen 845 QVLSNS----------------LLKDTDVDLECLAQKTDG---FTGADLQSLLYNAQLAA 885 (952)
T ss_pred HHHhhc----------------cCCccccchHHHhhhcCC---CchhhHHHHHHHHHHHH
Confidence 876311 122334444455555555 88888888877764333
No 48
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=1.7e-14 Score=167.66 Aligned_cols=238 Identities=16% Similarity=0.201 Sum_probs=140.5
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhh------hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhcc
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS------QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTAL 322 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s------~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~l 322 (613)
.++.+++.+ .+.+|.||||||++.++... .++.+.|+.++.. +.+.|||+.+.+.....-..|.++.++
T Consensus 266 rl~~l~~~l---~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rR 340 (758)
T PRK11034 266 RFKALLKQL---EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARR 340 (758)
T ss_pred HHHHHHHHH---HhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhhccHHHHhh
Confidence 445555544 34589999999999986432 3456667766653 678899975543222234578999999
Q ss_pred CCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhh--------hcccCcccchhhHHHHH
Q 007208 323 FPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDS--------INVADTMVLGNYIEEIV 394 (613)
Q Consensus 323 F~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~--------l~~~d~~~~~~~ie~iV 394 (613)
|. .|+|+.|+.+++..||+.+...-. ..|++...|.+- .-..| .+++...-.++
T Consensus 341 Fq-~I~v~ePs~~~~~~IL~~~~~~ye----------------~~h~v~i~~~al~~a~~ls~ryi~~-r~lPdKaidll 402 (758)
T PRK11034 341 FQ-KIDITEPSIEETVQIINGLKPKYE----------------AHHDVRYTAKAVRAAVELAVKYIND-RHLPDKAIDVI 402 (758)
T ss_pred Cc-EEEeCCCCHHHHHHHHHHHHHHhh----------------hccCCCcCHHHHHHHHHHhhccccC-ccChHHHHHHH
Confidence 95 899999999999999997643311 123333333222 11121 13344555566
Q ss_pred HHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCc
Q 007208 395 VSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPEST 474 (613)
Q Consensus 395 ~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 474 (613)
..|.+..-+. |. ...+-.++.+++...++.+-... ...
T Consensus 403 dea~a~~~~~---~~-~~~~~~v~~~~i~~v~~~~tgip--------------------------------------~~~ 440 (758)
T PRK11034 403 DEAGARARLM---PV-SKRKKTVNVADIESVVARIARIP--------------------------------------EKS 440 (758)
T ss_pred HHHHHhhccC---cc-cccccccChhhHHHHHHHHhCCC--------------------------------------hhh
Confidence 6666544221 11 11123467778877776332100 000
Q ss_pred hhhhhhcCCCCCCCCCCcccccCCCCCCCCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhc
Q 007208 475 SEAEKSAAAPNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKG 554 (613)
Q Consensus 475 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~ 554 (613)
-. .+ +......++..+. ..|.|++++++.|.+.+..-. .+
T Consensus 441 ~~-----------~~----------~~~~l~~l~~~L~-------------~~ViGQ~~ai~~l~~~i~~~~------~g 480 (758)
T PRK11034 441 VS-----------QS----------DRDTLKNLGDRLK-------------MLVFGQDKAIEALTEAIKMSR------AG 480 (758)
T ss_pred hh-----------hh----------HHHHHHHHHHHhc-------------ceEeCcHHHHHHHHHHHHHHh------cc
Confidence 00 00 0000112222222 246789999999998886411 11
Q ss_pred C--CCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec
Q 007208 555 G--LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS 591 (613)
Q Consensus 555 ~--~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~ 591 (613)
+ ..+|...+||+||||||||.+|+++|..++.+|+..
T Consensus 481 l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i 519 (758)
T PRK11034 481 LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_pred ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence 1 113444689999999999999999999999999843
No 49
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.63 E-value=2.3e-16 Score=171.41 Aligned_cols=94 Identities=32% Similarity=0.540 Sum_probs=86.1
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccC----C
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPC----L 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~----~ 594 (613)
+.|+++|+||||++.++++|++.+.+|+.+|++|...|+.+++|+|||||||||||++|+++|++++.+|+.... .
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999984332 2
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.++|++++.++++|+.|.
T Consensus 218 k~~ge~~~~lr~lf~~A~ 235 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLAR 235 (398)
T ss_pred HhcchhHHHHHHHHHHHH
Confidence 467888999999999875
No 50
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.5e-16 Score=158.27 Aligned_cols=228 Identities=17% Similarity=0.271 Sum_probs=165.1
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 62 NITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 62 ~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
..||.++... |+..+.+-+++-.+|.||++ |-.-=-.+++++.|+||++.+++.||||.|+.-.|.||-+=.+++-
T Consensus 181 ~Ety~diGGl--e~QiQEiKEsvELPLthPE~--YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 181 QETYADIGGL--ESQIQEIKESVELPLTHPEY--YEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred hhhhcccccH--HHHHHHHHHhhcCCCCCHHH--HHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 4689999999 99999999999999999997 4332234567799999999999999999999999999988888887
Q ss_pred hhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccccc
Q 007208 142 LKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASAN 221 (613)
Q Consensus 142 ~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (613)
+++ .|
T Consensus 257 Qky---lG------------------------------------------------------------------------ 261 (440)
T KOG0726|consen 257 QKY---LG------------------------------------------------------------------------ 261 (440)
T ss_pred HHH---hc------------------------------------------------------------------------
Confidence 665 12
Q ss_pred cccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHHHHh
Q 007208 222 ISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKMMKK 293 (613)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~l~~ 293 (613)
|...+++.||.|+.+. +|+|+|||+||.+=.++ .++-..+.++|+.
T Consensus 262 -----------------------dGpklvRqlF~vA~e~---apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ 315 (440)
T KOG0726|consen 262 -----------------------DGPKLVRELFRVAEEH---APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 315 (440)
T ss_pred -----------------------cchHHHHHHHHHHHhc---CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh
Confidence 1234788999986666 99999999999965553 2344455566665
Q ss_pred hc-----CcE-EEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 007208 294 LL-----ASV-LILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVL 365 (613)
Q Consensus 294 l~-----g~V-lIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL 365 (613)
+. +-| +|++ +|....+|.++.| +.+.+|+++.|++..+..||.++-.+.. +....|+..+ +.
T Consensus 316 ldGFdsrgDvKvimA------Tnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt--l~~dVnle~l--i~ 385 (440)
T KOG0726|consen 316 LDGFDSRGDVKVIMA------TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT--LAEDVNLEEL--IM 385 (440)
T ss_pred ccCccccCCeEEEEe------cccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc--hhccccHHHH--hh
Confidence 54 346 6666 5566778888877 8999999999999999999988754311 1112232222 22
Q ss_pred hcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhh
Q 007208 366 SANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLS 427 (613)
Q Consensus 366 ~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~ 427 (613)
...+++++|+.++|. -|=-.+|. ..++.++++||..|.+
T Consensus 386 ~kddlSGAdIkAict---------------EaGllAlR--------erRm~vt~~DF~ka~e 424 (440)
T KOG0726|consen 386 TKDDLSGADIKAICT---------------EAGLLALR--------ERRMKVTMEDFKKAKE 424 (440)
T ss_pred cccccccccHHHHHH---------------HHhHHHHH--------HHHhhccHHHHHHHHH
Confidence 333444444444444 44334443 2356799999999986
No 51
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.58 E-value=1.5e-15 Score=164.93 Aligned_cols=94 Identities=33% Similarity=0.583 Sum_probs=85.6
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccC----C
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPC----L 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~----~ 594 (613)
+.|+++|+||||++++++.|++.+.+|+.+|+.|...|+.+++|+|||||||||||++|+++|++++.+|+.... .
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 456899999999999999999999999999999999999999999999999999999999999999999984332 2
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.+.|++++.++++|+.|.
T Consensus 204 ~~~g~~~~~i~~~f~~a~ 221 (389)
T PRK03992 204 KFIGEGARLVRELFELAR 221 (389)
T ss_pred hhccchHHHHHHHHHHHH
Confidence 467888999999999875
No 52
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.58 E-value=1.9e-15 Score=168.25 Aligned_cols=96 Identities=31% Similarity=0.503 Sum_probs=84.7
Q ss_pred cCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc---------
Q 007208 517 PSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA--------- 587 (613)
Q Consensus 517 ~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~--------- 587 (613)
..+.|+++|+||||++.+++.|++.+.+|+.||++|..+++.+++|+|||||||||||++|+++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 34557899999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -eee----ccCCCcchHHHHHHHHHHHHhh
Q 007208 588 -SLM----SPCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 588 -fi~----~v~~~~lge~e~~Ir~IF~~A~ 612 (613)
|+. .....++|+++++++.+|+.|.
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar 282 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAR 282 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHH
Confidence 331 1234578999999999999875
No 53
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.56 E-value=3.6e-15 Score=163.64 Aligned_cols=94 Identities=30% Similarity=0.530 Sum_probs=85.2
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccC----C
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPC----L 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~----~ 594 (613)
..|.++|+||||++++++.|.+.+.+|+.+|++|...++.+++|+|||||||||||++|+++|++++.+|+.... .
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 345789999999999999999999999999999999999999999999999999999999999999999984332 3
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.++|++++.++++|+.|.
T Consensus 256 k~~Ge~~~~vr~lF~~A~ 273 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAE 273 (438)
T ss_pred hhcchHHHHHHHHHHHHH
Confidence 467888999999999875
No 54
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.4e-15 Score=154.91 Aligned_cols=92 Identities=30% Similarity=0.527 Sum_probs=86.4
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----Cc
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL----PS 596 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~----~~ 596 (613)
.+++|+.|||+..+..+++|.|.+|+.+|++|.+.|++||+|++||||||||||++|++||..+|++|+..+.+ .+
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999955544 48
Q ss_pred chHHHHHHHHHHHHhh
Q 007208 597 LPNGLVRMRRMFELYS 612 (613)
Q Consensus 597 lge~e~~Ir~IF~~A~ 612 (613)
+||..+-||+.|..|+
T Consensus 207 iGEsaRlIRemf~yA~ 222 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAR 222 (388)
T ss_pred cccHHHHHHHHHHHHh
Confidence 8999999999999885
No 55
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.56 E-value=2.1e-15 Score=152.18 Aligned_cols=89 Identities=22% Similarity=0.404 Sum_probs=79.4
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee----ccCCCc
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM----SPCLPS 596 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~----~v~~~~ 596 (613)
++++++||.|+++.|+..+-++.+ |.+|+.|... .|+.|||||||||||||+|+|+|+++..||+. ...+.+
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 378999999999999999888888 9999999864 47899999999999999999999999999993 234568
Q ss_pred chHHHHHHHHHHHHhhC
Q 007208 597 LPNGLVRMRRMFELYSR 613 (613)
Q Consensus 597 lge~e~~Ir~IF~~A~r 613 (613)
+|.+.++|+++|++|++
T Consensus 192 VGdgar~Ihely~rA~~ 208 (368)
T COG1223 192 VGDGARRIHELYERARK 208 (368)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 89999999999999974
No 56
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.7e-14 Score=142.44 Aligned_cols=250 Identities=17% Similarity=0.244 Sum_probs=173.5
Q ss_pred hHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHH
Q 007208 44 PEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKA 123 (613)
Q Consensus 44 ~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKA 123 (613)
+.+|.....+-.||.+ -..++.+++.. |...+.|++|...++.|++-++.. + -.+++++|++||++.+++++|+|
T Consensus 150 P~eyDsrVkaMevDek-PtE~YsDiGGl--dkQIqELvEAiVLpmth~ekF~~l-g-i~pPKGvLmYGPPGTGKTlmARA 224 (424)
T KOG0652|consen 150 PSEYDSRVKAMEVDEK-PTEQYSDIGGL--DKQIQELVEAIVLPMTHKEKFENL-G-IRPPKGVLMYGPPGTGKTLMARA 224 (424)
T ss_pred ChhhhhhcceeeeccC-CcccccccccH--HHHHHHHHHHhccccccHHHHHhc-C-CCCCCceEeeCCCCCcHHHHHHH
Confidence 4566666666777644 45689999999 999999999999999999854322 1 23567799999999999999999
Q ss_pred HHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCc
Q 007208 124 LAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGT 203 (613)
Q Consensus 124 LA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (613)
-|-+-.|.||-|-.-.+.+-+ +|
T Consensus 225 cAaqT~aTFLKLAgPQLVQMf----------------------------IG----------------------------- 247 (424)
T KOG0652|consen 225 CAAQTNATFLKLAGPQLVQMF----------------------------IG----------------------------- 247 (424)
T ss_pred HHHhccchHHHhcchHHHhhh----------------------------hc-----------------------------
Confidence 999999998877664443111 11
Q ss_pred cCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh---
Q 007208 204 EGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--- 280 (613)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--- 280 (613)
|...+++.-|.++-+ ..|+|||||++|.+=.++
T Consensus 248 -----------------------------------------dGAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDS 283 (424)
T KOG0652|consen 248 -----------------------------------------DGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDS 283 (424)
T ss_pred -----------------------------------------chHHHHHHHHHHhhc---cCCeEEEEechhhhccccccc
Confidence 223355666665444 599999999999976554
Q ss_pred --------hHHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHH
Q 007208 281 --------QRTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEED 348 (613)
Q Consensus 281 --------~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d 348 (613)
+|.+--|...|+.++ ..|-||+. +|+.+-++.++.+ +++.+||++.|+++.|.+|++++- +.
T Consensus 284 ek~GDREVQRTMLELLNQLDGFss~~~vKviAA-----TNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHs-RK 357 (424)
T KOG0652|consen 284 EKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA-----TNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHS-RK 357 (424)
T ss_pred cccccHHHHHHHHHHHHhhcCCCCccceEEEee-----cccccccCHHHhhcccccccccCCCCChHHHHHHHHHhh-hh
Confidence 344433444455555 35767764 6677778888877 999999999999999999998873 11
Q ss_pred HHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhh
Q 007208 349 MKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSI 428 (613)
Q Consensus 349 ~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~ 428 (613)
| -...|+...+|+.-+-. |.+++...+...|=..+|.+ +.-.++-+||..|+..
T Consensus 358 M---------------nv~~DvNfeELaRsTdd---FNGAQcKAVcVEAGMiALRr--------~atev~heDfmegI~e 411 (424)
T KOG0652|consen 358 M---------------NVSDDVNFEELARSTDD---FNGAQCKAVCVEAGMIALRR--------GATEVTHEDFMEGILE 411 (424)
T ss_pred c---------------CCCCCCCHHHHhhcccc---cCchhheeeehhhhHHHHhc--------ccccccHHHHHHHHHH
Confidence 2 12334444444444433 44555544444454455543 3334888999999976
Q ss_pred hhc
Q 007208 429 FQE 431 (613)
Q Consensus 429 ~q~ 431 (613)
.|.
T Consensus 412 Vqa 414 (424)
T KOG0652|consen 412 VQA 414 (424)
T ss_pred HHH
Confidence 653
No 57
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.2e-15 Score=158.97 Aligned_cols=105 Identities=36% Similarity=0.567 Sum_probs=91.1
Q ss_pred hHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 506 EFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 506 e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.....+.++|+. ..+.|.|+||+|++++++.+.+.+.+|+.+|++|.++ ..|.+|+||+|||||||||||+|||.|++
T Consensus 134 ~~~~~i~~EI~~-~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~ 211 (428)
T KOG0740|consen 134 TLIEGIRNEIGD-TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESG 211 (428)
T ss_pred hhhHHHHHHHhc-cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhc
Confidence 344555566654 4457999999999999999999999999999999974 57889999999999999999999999999
Q ss_pred Ccee----eccCCCcchHHHHHHHHHHHHhh
Q 007208 586 QASL----MSPCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 586 ~~fi----~~v~~~~lge~e~~Ir~IF~~A~ 612 (613)
+.|+ +...+.|+|++++.||.+|.-|+
T Consensus 212 atff~iSassLtsK~~Ge~eK~vralf~vAr 242 (428)
T KOG0740|consen 212 ATFFNISASSLTSKYVGESEKLVRALFKVAR 242 (428)
T ss_pred ceEeeccHHHhhhhccChHHHHHHHHHHHHH
Confidence 9999 23455799999999999998875
No 58
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.7e-13 Score=153.81 Aligned_cols=237 Identities=16% Similarity=0.234 Sum_probs=183.6
Q ss_pred cCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEe
Q 007208 56 VDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLL 135 (613)
Q Consensus 56 v~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~l 135 (613)
...+.+.|+|.+.-.- |..|+.|.+.+- .||.|. ||++-=.-..+++||.||+..++++||||.|-+-++++...
T Consensus 140 ~~~~~~~v~F~DVAG~--dEakeel~EiVd-fLk~p~--ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i 214 (596)
T COG0465 140 YLEDQVKVTFADVAGV--DEAKEELSELVD-FLKNPK--KYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 214 (596)
T ss_pred hcccccCcChhhhcCc--HHHHHHHHHHHH-HHhCch--hhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceec
Confidence 3445899999999998 999999999886 788765 45443336788999999999999999999999999999988
Q ss_pred ecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcccccc
Q 007208 136 DVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRN 215 (613)
Q Consensus 136 D~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (613)
-.++|..-+ +|
T Consensus 215 SGS~FVemf----------------------------VG----------------------------------------- 225 (596)
T COG0465 215 SGSDFVEMF----------------------------VG----------------------------------------- 225 (596)
T ss_pred cchhhhhhh----------------------------cC-----------------------------------------
Confidence 888885222 11
Q ss_pred CccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHH
Q 007208 216 ASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTY 284 (613)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~ 284 (613)
.-...++.||+ .+-+++|||||||++|..=..+ ....
T Consensus 226 -----------------------------vGAsRVRdLF~---qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTL 273 (596)
T COG0465 226 -----------------------------VGASRVRDLFE---QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTL 273 (596)
T ss_pred -----------------------------CCcHHHHHHHH---HhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHH
Confidence 00113455555 5666899999999999953322 2366
Q ss_pred HHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 007208 285 NLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNH 360 (613)
Q Consensus 285 ~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~ 360 (613)
+++.-.+|.+. .+|+|++. +|+++-+|.++.| +|+.+|.|..|+-.+|.+|++.|+..
T Consensus 274 NQlLvEmDGF~~~~gviviaa-----TNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~------------- 335 (596)
T COG0465 274 NQLLVEMDGFGGNEGVIVIAA-----TNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN------------- 335 (596)
T ss_pred HHHHhhhccCCCCCceEEEec-----CCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc-------------
Confidence 67777788887 46888874 7888889999998 99999999999999999999977521
Q ss_pred HHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhh
Q 007208 361 IMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 361 I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q 430 (613)
+-.+.+++...++..+.+ |++++++.++..|.-++.++++ -.|++.+|..|...+-
T Consensus 336 ---~~l~~~Vdl~~iAr~tpG---fsGAdL~nl~NEAal~aar~n~--------~~i~~~~i~ea~drv~ 391 (596)
T COG0465 336 ---KPLAEDVDLKKIARGTPG---FSGADLANLLNEAALLAARRNK--------KEITMRDIEEAIDRVI 391 (596)
T ss_pred ---CCCCCcCCHHHHhhhCCC---cccchHhhhHHHHHHHHHHhcC--------eeEeccchHHHHHHHh
Confidence 112356666677777777 9999999999999888877554 3588899999997553
No 59
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7e-13 Score=155.04 Aligned_cols=182 Identities=19% Similarity=0.285 Sum_probs=141.8
Q ss_pred CCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 58 GRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 58 ~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
+.+..|+||+..+. ++.++.|-+.+..+|-+|+++... ++ ...+++|++||++.+++..|+|||-.+--.-
T Consensus 257 ~~~~~v~fd~vggl--~~~i~~LKEmVl~PLlyPE~f~~~-~i-tpPrgvL~~GppGTGkTl~araLa~~~s~~~----- 327 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGL--ENYINQLKEMVLLPLLYPEFFDNF-NI-TPPRGVLFHGPPGTGKTLMARALAAACSRGN----- 327 (1080)
T ss_pred hhhcccCccccccH--HHHHHHHHHHHHhHhhhhhHhhhc-cc-CCCcceeecCCCCCchhHHHHhhhhhhcccc-----
Confidence 45678999999999 999999999999999999973321 12 3456699999999999999999997542110
Q ss_pred ccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCc
Q 007208 138 TDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNAS 217 (613)
Q Consensus 138 ~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (613)
.|.+.+.+ +|.
T Consensus 328 --------------~kisffmr----------------------------------kga--------------------- 338 (1080)
T KOG0732|consen 328 --------------RKISFFMR----------------------------------KGA--------------------- 338 (1080)
T ss_pred --------------cccchhhh----------------------------------cCc---------------------
Confidence 01111000 111
Q ss_pred cccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHH
Q 007208 218 ASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQK 289 (613)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~ 289 (613)
.+.+.|..+..+-+..||+. +-++||+|||+|+||-+.+-+ ..++++|..
T Consensus 339 -------------------D~lskwvgEaERqlrllFee---A~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLa 396 (1080)
T KOG0732|consen 339 -------------------DCLSKWVGEAERQLRLLFEE---AQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLA 396 (1080)
T ss_pred -------------------hhhccccCcHHHHHHHHHHH---HhccCceEEeccccccccccccchHHHhhhhHHHHHHH
Confidence 12367988888888888884 555799999999999655443 238889999
Q ss_pred HHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHH
Q 007208 290 MMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQ 344 (613)
Q Consensus 290 ~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~ 344 (613)
+|+.++ |.|+|||+ +++++.++.++++ +|..++-+++|+-+.|..|+..|
T Consensus 397 LmdGldsRgqVvvigA-----TnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ih 450 (1080)
T KOG0732|consen 397 LMDGLDSRGQVVVIGA-----TNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIH 450 (1080)
T ss_pred hccCCCCCCceEEEcc-----cCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHh
Confidence 999988 67999995 8889999999977 99999999999999999999876
No 60
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.49 E-value=3e-14 Score=153.18 Aligned_cols=94 Identities=32% Similarity=0.578 Sum_probs=84.8
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL---- 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~---- 594 (613)
+.|.++|+||||++++++.|++.+.+|+.+|+.|...|+.+++|+|||||||||||++|+++|.+++.+|+....+
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999844322
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.++|++...++++|+.|.
T Consensus 195 ~~~g~~~~~i~~~f~~a~ 212 (364)
T TIGR01242 195 KYIGEGARLVREIFELAK 212 (364)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 357788889999998774
No 61
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.6e-14 Score=160.24 Aligned_cols=92 Identities=33% Similarity=0.508 Sum_probs=85.1
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----Cc
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL----PS 596 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~----~~ 596 (613)
.+++|.|+.|.++.|+++.|.|.. |++|..|...|...|+|+||+||||||||+||+|+|.++++||+....+ ++
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 489999999999999999999998 9999999999999999999999999999999999999999999944443 36
Q ss_pred chHHHHHHHHHHHHhhC
Q 007208 597 LPNGLVRMRRMFELYSR 613 (613)
Q Consensus 597 lge~e~~Ir~IF~~A~r 613 (613)
+|-++++||++|++|.|
T Consensus 224 VGvGAsRVRdLF~qAkk 240 (596)
T COG0465 224 VGVGASRVRDLFEQAKK 240 (596)
T ss_pred cCCCcHHHHHHHHHhhc
Confidence 78899999999999975
No 62
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.8e-14 Score=164.61 Aligned_cols=93 Identities=31% Similarity=0.505 Sum_probs=84.4
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC-----Ccee----ec
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG-----QASL----MS 591 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g-----~~fi----~~ 591 (613)
..++|++|||+++++..++|.|+.||.||+.|..+++.||+|+|||||||||||++|+|+|..+. +.|+ ..
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 37899999999999999999999999999999999999999999999999999999999999873 4555 23
Q ss_pred cCCCcchHHHHHHHHHHHHhhC
Q 007208 592 PCLPSLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 592 v~~~~lge~e~~Ir~IF~~A~r 613 (613)
..+.|+|+.++++|-+|+.|+|
T Consensus 340 ~lskwvgEaERqlrllFeeA~k 361 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQK 361 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhc
Confidence 3456899999999999999986
No 63
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.44 E-value=6.9e-14 Score=156.29 Aligned_cols=95 Identities=31% Similarity=0.449 Sum_probs=83.8
Q ss_pred cCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC--
Q 007208 517 PSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL-- 594 (613)
Q Consensus 517 ~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~-- 594 (613)
..+.++++|+||+|++++++++.+++.+ +++|+.|...+..+++|+|||||||||||++|+++|.++++||+....+
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3445789999999999999999999887 9999999998999999999999999999999999999999999943322
Q ss_pred --CcchHHHHHHHHHHHHhh
Q 007208 595 --PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 --~~lge~e~~Ir~IF~~A~ 612 (613)
.+.|.++++++++|+.|.
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~ 144 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAK 144 (495)
T ss_pred HHHHhcccHHHHHHHHHHHH
Confidence 346778899999999885
No 64
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.2e-12 Score=129.69 Aligned_cols=231 Identities=13% Similarity=0.227 Sum_probs=175.8
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+.-+||+.+...- ....+.|.+.+-.+|-||+- |..-=-...++|||+||++.+++.+|+|.|+.-+|.|+-+=.+
T Consensus 170 ekpdvty~dvggc--keqieklrevve~pll~per--fv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 170 EKPDVTYSDVGGC--KEQIEKLREVVELPLLHPER--FVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred cCCCcccccccch--HHHHHHHHHHHhccccCHHH--HhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 3457888888888 88899999999999999984 5442234567799999999999999999999999999998888
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
.+.+|+ .|+
T Consensus 246 elvqky---vge-------------------------------------------------------------------- 254 (435)
T KOG0729|consen 246 ELVQKY---VGE-------------------------------------------------------------------- 254 (435)
T ss_pred HHHHHH---hhh--------------------------------------------------------------------
Confidence 887776 121
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh---------hHHHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS---------QRTYNLFQK 289 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s---------~r~~~~l~~ 289 (613)
..+.+++||+.+..- ..+|||||+||. +.++ ++....+.+
T Consensus 255 ---------------------------garmvrelf~martk---kaciiffdeida-iggarfddg~ggdnevqrtmle 303 (435)
T KOG0729|consen 255 ---------------------------GARMVRELFEMARTK---KACIIFFDEIDA-IGGARFDDGAGGDNEVQRTMLE 303 (435)
T ss_pred ---------------------------hHHHHHHHHHHhccc---ceEEEEeecccc-ccCccccCCCCCcHHHHHHHHH
Confidence 123578888875554 889999999999 4443 334444555
Q ss_pred HHHhhc-----CcE-EEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 007208 290 MMKKLL-----ASV-LILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHI 361 (613)
Q Consensus 290 ~l~~l~-----g~V-lIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I 361 (613)
++..|. |++ ++.+ +|+++-++.++.+ +.+.+||+.+|+-|+|..||+.+-..
T Consensus 304 li~qldgfdprgnikvlma------tnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks-------------- 363 (435)
T KOG0729|consen 304 LINQLDGFDPRGNIKVLMA------TNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS-------------- 363 (435)
T ss_pred HHHhccCCCCCCCeEEEee------cCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--------------
Confidence 555543 566 4554 6778888999988 89999999999999999999976311
Q ss_pred HHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhh
Q 007208 362 MEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSI 428 (613)
Q Consensus 362 ~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~ 428 (613)
+...+|+-.+=|+.+|.+ -|+++|..+.-.|=.+++... +-+.+-+||-.|+..
T Consensus 364 --msverdir~ellarlcpn---stgaeirsvcteagmfairar--------rk~atekdfl~av~k 417 (435)
T KOG0729|consen 364 --MSVERDIRFELLARLCPN---STGAEIRSVCTEAGMFAIRAR--------RKVATEKDFLDAVNK 417 (435)
T ss_pred --cccccchhHHHHHhhCCC---CcchHHHHHHHHhhHHHHHHH--------hhhhhHHHHHHHHHH
Confidence 223456666778899999 777999888888877776421 234677899998863
No 65
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.33 E-value=1.1e-10 Score=138.16 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHhhhcCCCEEEEEccchhhhhhh-----hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeC
Q 007208 256 VLCYVSKTSPIVVYLRDVDKLIFKS-----QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIR 330 (613)
Q Consensus 256 vl~s~s~~~P~IL~idDiD~~l~~s-----~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~ 330 (613)
++.++....|+||||||++.++... ......|+..+. .|.+.+||..+.+........+..+.++|. .|++.
T Consensus 263 i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ 339 (821)
T CHL00095 263 IFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVG 339 (821)
T ss_pred HHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecC
Confidence 3334444689999999999977532 134455554444 366888887554322222346788999996 58999
Q ss_pred CCChHHHHHHHHHHHH
Q 007208 331 PPEDENHLVSWKSQLE 346 (613)
Q Consensus 331 ~P~ee~Rl~Ilk~~L~ 346 (613)
.|+.++...|++...+
T Consensus 340 ep~~~e~~aILr~l~~ 355 (821)
T CHL00095 340 EPSVEETIEILFGLRS 355 (821)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987644
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.32 E-value=1.6e-12 Score=148.87 Aligned_cols=95 Identities=28% Similarity=0.469 Sum_probs=83.1
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC---
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL--- 594 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~--- 594 (613)
..+++++|+||+|++++++++.+++.+ +++|+.|...+..+++|+||+||||||||++|+++|.+++.||+....+
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 344578999999999999999999887 9999999999999999999999999999999999999999999943332
Q ss_pred -CcchHHHHHHHHHHHHhhC
Q 007208 595 -PSLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 595 -~~lge~e~~Ir~IF~~A~r 613 (613)
.+.|.+..+++++|+.|++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~ 273 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKE 273 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhc
Confidence 3456678899999999863
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=1.1e-10 Score=137.96 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=61.1
Q ss_pred CCCEEEEEccchhhhh-----hhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 263 TSPIVVYLRDVDKLIF-----KSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~-----~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
.+++||||||++.+.. +.++..+.|+-.+. .|.+.+||+.+.+-.+..-..+.++.++|. .|+|++|+.+++
T Consensus 279 ~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~ 355 (852)
T TIGR03345 279 PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETA 355 (852)
T ss_pred CCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHH
Confidence 4799999999999774 23455566666654 367889998665444455668999999995 899999999999
Q ss_pred HHHHHHH
Q 007208 338 LVSWKSQ 344 (613)
Q Consensus 338 l~Ilk~~ 344 (613)
..||+.+
T Consensus 356 ~~iL~~~ 362 (852)
T TIGR03345 356 IRMLRGL 362 (852)
T ss_pred HHHHHHH
Confidence 9998654
No 68
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.2e-11 Score=128.04 Aligned_cols=173 Identities=18% Similarity=0.288 Sum_probs=130.0
Q ss_pred CcccccccccccccHHHHHHHHHHHHhhcCCCccccccc-CCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 60 ESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTR-NLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 60 ~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~-~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
--++||++.... -...-.|.+..-+||.+|+++. + ++. .+..+||+||++.+++.||+|.|...|+.+|.+-++
T Consensus 126 ~~~~s~~~~ggl--~~qirelre~ielpl~np~lf~--rvgIk-~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 126 PRNISFENVGGL--FYQIRELREVIELPLTNPELFL--RVGIK-PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred ccccCHHHhCCh--HHHHHHHHhheEeeccCchhcc--ccCCC-CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHh
Confidence 345789998876 4566678899999999999843 3 333 455689999999999999999999999999999888
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
-|-+++ -|+|
T Consensus 201 ~lv~ky---iGEs------------------------------------------------------------------- 210 (388)
T KOG0651|consen 201 ALVDKY---IGES------------------------------------------------------------------- 210 (388)
T ss_pred hhhhhh---cccH-------------------------------------------------------------------
Confidence 775333 1221
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-------h-HHHHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-------Q-RTYNLFQKM 290 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-------~-r~~~~l~~~ 290 (613)
.++++ +-+..+++++|||||+||||.+..+. + .+...|-++
T Consensus 211 ----------------------------aRlIR---emf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeL 259 (388)
T KOG0651|consen 211 ----------------------------ARLIR---DMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMEL 259 (388)
T ss_pred ----------------------------HHHHH---HHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHH
Confidence 12334 44456777899999999999966553 2 233344444
Q ss_pred HHhhc-----CcE-EEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHH
Q 007208 291 MKKLL-----ASV-LILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQ 344 (613)
Q Consensus 291 l~~l~-----g~V-lIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~ 344 (613)
++.+. ++| +|++ +|+++-++.++.| +++.+++|++|++..|+.|+|.+
T Consensus 260 lnqmdgfd~l~rVk~Ima------tNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 260 LNQMDGFDTLHRVKTIMA------TNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred HHhhccchhcccccEEEe------cCCccccchhhcCCccccceeccCCcchhhceeeEeec
Confidence 44332 567 6666 6777888888887 99999999999999999999865
No 69
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=4.6e-10 Score=133.25 Aligned_cols=80 Identities=13% Similarity=0.240 Sum_probs=57.7
Q ss_pred CCCEEEEEccchhhhh-h-h---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 263 TSPIVVYLRDVDKLIF-K-S---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~-~-s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
..|+||||||++.++. + + .+..+.|+-++. .+.+.+||..+.+.....-..+.++.++|. .|.|+.|+.+++
T Consensus 265 ~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~ 341 (852)
T TIGR03346 265 EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDT 341 (852)
T ss_pred CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHH
Confidence 4799999999999764 1 1 235555655543 467888887554322222456899999995 699999999999
Q ss_pred HHHHHHHH
Q 007208 338 LVSWKSQL 345 (613)
Q Consensus 338 l~Ilk~~L 345 (613)
+.||+.+.
T Consensus 342 ~~iL~~~~ 349 (852)
T TIGR03346 342 ISILRGLK 349 (852)
T ss_pred HHHHHHHH
Confidence 99998653
No 70
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.22 E-value=7.3e-12 Score=133.46 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=67.7
Q ss_pred cccccc-cccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee----ccCCCcc
Q 007208 523 VTFADI-GALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM----SPCLPSL 597 (613)
Q Consensus 523 v~~ddI-gGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~----~v~~~~l 597 (613)
.+|+++ ||+.-....+...+....++ .....++++|++++||||||||||++|++||+++|++||. .+.++++
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 456777 77666666555554332221 1123678999999999999999999999999999999993 3455789
Q ss_pred hHHHHHHHHHHHHhh
Q 007208 598 PNGLVRMRRMFELYS 612 (613)
Q Consensus 598 ge~e~~Ir~IF~~A~ 612 (613)
|+++++||++|+.|.
T Consensus 190 GEsEk~IR~~F~~A~ 204 (413)
T PLN00020 190 GEPGKLIRQRYREAA 204 (413)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999999885
No 71
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.21 E-value=2.1e-10 Score=103.62 Aligned_cols=119 Identities=26% Similarity=0.401 Sum_probs=91.5
Q ss_pred eEeecchhHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccc
Q 007208 107 ILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQ 186 (613)
Q Consensus 107 ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (613)
|||+||++++++.|||+||++++++++.+|...+...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~------------------------------------------ 38 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSY------------------------------------------ 38 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSS------------------------------------------
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccc------------------------------------------
Confidence 79999999999999999999999999999998874100
Q ss_pred cccccCCCCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCC-C
Q 007208 187 GTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTS-P 265 (613)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~-P 265 (613)
..+ ..+.+..++..+.+.. |
T Consensus 39 --------------------------------------------------------~~~---~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 39 --------------------------------------------------------AGD---SEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp --------------------------------------------------------TTH---HHHHHHHHHHHHHHTSTS
T ss_pred --------------------------------------------------------ccc---cccccccccccccccccc
Confidence 001 1133444444555555 9
Q ss_pred EEEEEccchhhhhhh--------hHHHHHHHHHHHhhcC---cEEEEeeeeccCCCCccccchHhh-ccCCceEEeCC
Q 007208 266 IVVYLRDVDKLIFKS--------QRTYNLFQKMMKKLLA---SVLILGSRIVDLSNDQREVDGRVT-ALFPYNIEIRP 331 (613)
Q Consensus 266 ~IL~idDiD~~l~~s--------~r~~~~l~~~l~~l~g---~VlIiGS~~~ds~~~~~~v~~~l~-~lF~~~IeI~~ 331 (613)
+||||||+|.+.... .+.+..|...++.... +++||++ ++..+.+++.+. .+|...|++++
T Consensus 60 ~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~t-----tn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 60 CVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIAT-----TNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp EEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEE-----ESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred eeeeeccchhcccccccccccccccccceeeecccccccccccceeEEe-----eCChhhCCHhHHhCCCcEEEEcCC
Confidence 999999999988775 4577778888887765 5888886 555788999999 99999999874
No 72
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.21 E-value=2.1e-10 Score=135.92 Aligned_cols=80 Identities=10% Similarity=0.240 Sum_probs=58.3
Q ss_pred CCCEEEEEccchhhhhh-----hhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 263 TSPIVVYLRDVDKLIFK-----SQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~-----s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
..|+||||||++.+... +.+..+.|+-.+. .|.+.+||+.+.+.....-..+.++.++|. .|.+..|+.+++
T Consensus 270 ~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~ 346 (857)
T PRK10865 270 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDT 346 (857)
T ss_pred CCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHH
Confidence 58999999999997632 1234455555543 367889997554422222457899999997 699999999999
Q ss_pred HHHHHHHH
Q 007208 338 LVSWKSQL 345 (613)
Q Consensus 338 l~Ilk~~L 345 (613)
+.||+.+.
T Consensus 347 ~~iL~~l~ 354 (857)
T PRK10865 347 IAILRGLK 354 (857)
T ss_pred HHHHHHHh
Confidence 99998654
No 73
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.1e-10 Score=118.10 Aligned_cols=191 Identities=23% Similarity=0.278 Sum_probs=147.3
Q ss_pred cccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCe--
Q 007208 54 QIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAK-- 131 (613)
Q Consensus 54 ~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~-- 131 (613)
-++++.+-.=-||+-=|= -+.|+.|.+-|..-|+..+ .+-..+|-+-+|=|||+|||+.+++.|.||||+++..|
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fse-k~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~ 206 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSE-KKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTN 206 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHh-cCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence 456777777778887665 7899999999999998877 45567899999999999999999999999999998877
Q ss_pred -------EEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCcc
Q 007208 132 -------LLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTE 204 (613)
Q Consensus 132 -------LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (613)
|+-++++.+.
T Consensus 207 ~~y~~~~liEinshsLF--------------------------------------------------------------- 223 (423)
T KOG0744|consen 207 DRYYKGQLIEINSHSLF--------------------------------------------------------------- 223 (423)
T ss_pred CccccceEEEEehhHHH---------------------------------------------------------------
Confidence 2222222222
Q ss_pred CCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhc--CCCEEEEEccchhhhhhh--
Q 007208 205 GSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSK--TSPIVVYLRDVDKLIFKS-- 280 (613)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~--~~P~IL~idDiD~~l~~s-- 280 (613)
+.|....-.+++.+|.-+.+..+ ..=+-|+||++|.+...+
T Consensus 224 -----------------------------------SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s 268 (423)
T KOG0744|consen 224 -----------------------------------SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTS 268 (423)
T ss_pred -----------------------------------HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHh
Confidence 33554444566666666666655 344668899999976543
Q ss_pred ----------hHHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHH
Q 007208 281 ----------QRTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEED 348 (613)
Q Consensus 281 ----------~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d 348 (613)
-|.++.+...+|++- .+|||+++ +|-.+.+|.++-+|-+-..-|++|..+.|.+|+|.-+++-
T Consensus 269 ~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~T-----SNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 269 ASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILAT-----SNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred hhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEec-----cchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHH
Confidence 257888888888775 68999886 4445778889999999999999999999999999999886
Q ss_pred HH
Q 007208 349 MK 350 (613)
Q Consensus 349 ~k 350 (613)
|.
T Consensus 344 ~~ 345 (423)
T KOG0744|consen 344 IS 345 (423)
T ss_pred Hh
Confidence 64
No 74
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.2e-11 Score=131.56 Aligned_cols=91 Identities=24% Similarity=0.375 Sum_probs=74.6
Q ss_pred cccccc--ccccHHHHHH-HHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC---
Q 007208 522 SVTFAD--IGALEEIKES-LQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP--- 595 (613)
Q Consensus 522 ~v~~dd--IgGl~~vk~~-l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~--- 595 (613)
+..|.+ |||++.--.. .++.+...+--|+..+.+|++..+|||||||||||||++||-|.+.+++.==..+.+|
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 444554 6788876544 4666666677889999999999999999999999999999999999987654445665
Q ss_pred --cchHHHHHHHHHHHHhh
Q 007208 596 --SLPNGLVRMRRMFELYS 612 (613)
Q Consensus 596 --~lge~e~~Ir~IF~~A~ 612 (613)
|+|++|.|||++|.+|.
T Consensus 295 ~KYVGeSE~NvR~LFaDAE 313 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAE 313 (744)
T ss_pred HHhhcccHHHHHHHHHhHH
Confidence 78999999999999985
No 75
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.97 E-value=6.8e-09 Score=106.81 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=57.4
Q ss_pred CCEEEEEccchhhhhhh-----hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFKS-----QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s-----~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl 338 (613)
.+.||||||+|.+..+. .+....|...++...+.+++|.+...+..+....+++.+.++|+..|++++++.+++.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 56799999999965321 2233445555556566654444322211222344678899999999999999999999
Q ss_pred HHHHHHHHH
Q 007208 339 VSWKSQLEE 347 (613)
Q Consensus 339 ~Ilk~~L~~ 347 (613)
+||+..+..
T Consensus 185 ~Il~~~~~~ 193 (261)
T TIGR02881 185 EIAERMVKE 193 (261)
T ss_pred HHHHHHHHH
Confidence 999988764
No 76
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8e-09 Score=110.34 Aligned_cols=142 Identities=14% Similarity=0.221 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhhc-CCCEEEEEccchhhhhhhhH------HHHHHHHHHHhhc----CcEEEEeeeeccCCCCccccch
Q 007208 249 LIQSIYRVLCYVSK-TSPIVVYLRDVDKLIFKSQR------TYNLFQKMMKKLL----ASVLILGSRIVDLSNDQREVDG 317 (613)
Q Consensus 249 ~lqaL~evl~s~s~-~~P~IL~idDiD~~l~~s~r------~~~~l~~~l~~l~----g~VlIiGS~~~ds~~~~~~v~~ 317 (613)
.|-.|+++|+=+.+ ..-++||||+.|.|||.++. .-+.|..+|=.-. +-|||++ +|.+-++|.
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlA------tNrpgdlDs 500 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLA------TNRPGDLDS 500 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEec------cCCccchhH
Confidence 34555566655666 67799999999999998733 2334444443322 3468887 567788999
Q ss_pred HhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhh---hhhHHHH-HhhcCCCCchh----hhhhcccCcccchhh
Q 007208 318 RVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKD---NRNHIME-VLSANDLDCDD----LDSINVADTMVLGNY 389 (613)
Q Consensus 318 ~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~---N~~~I~~-vL~~~dl~c~d----La~l~~~d~~~~~~~ 389 (613)
+++++|+..|++++|.+|+|..+++.+|++...+-.... -..|+-+ -..+..+...+ +........+|++++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 999999999999999999999999999988664321111 0111110 00111122222 233333444599999
Q ss_pred HHHHHHH
Q 007208 390 IEEIVVS 396 (613)
Q Consensus 390 ie~iV~~ 396 (613)
|.++|.+
T Consensus 581 iakLva~ 587 (630)
T KOG0742|consen 581 IAKLVAS 587 (630)
T ss_pred HHHHHHH
Confidence 9988754
No 77
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.90 E-value=1.2e-09 Score=125.90 Aligned_cols=94 Identities=32% Similarity=0.446 Sum_probs=81.2
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC---
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL--- 594 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~--- 594 (613)
+.....+|+|++|++..++.+.+.+.+ +.+|+.|...+...++|+||+||||||||++|+++|.+++.||+....+
T Consensus 144 ~~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred chhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 344567899999999999999999988 7888999888888899999999999999999999999999999943222
Q ss_pred -CcchHHHHHHHHHHHHhh
Q 007208 595 -PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 -~~lge~e~~Ir~IF~~A~ 612 (613)
.+.|.++.+++++|+.|.
T Consensus 223 ~~~~g~~~~~~~~~f~~a~ 241 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAK 241 (644)
T ss_pred HhhhcccHHHHHHHHHHHH
Confidence 356778889999999875
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=98.90 E-value=2.6e-08 Score=104.36 Aligned_cols=128 Identities=9% Similarity=0.092 Sum_probs=78.0
Q ss_pred CCEEEEEccchhhhhh------hhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 264 SPIVVYLRDVDKLIFK------SQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~------s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
.+.||||||+|.+... +.+....|...++...+.++||++...+....-...+..+.++|+..|++++++.+++
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 5679999999996432 2446666777777766667666642211111112345789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhh
Q 007208 338 LVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHL 402 (613)
Q Consensus 338 l~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l 402 (613)
.+||+.++.+....+ .......+...+ ......+..=..+++..+|..|+..+.
T Consensus 202 ~~I~~~~l~~~~~~l-~~~~~~~L~~~i----------~~~~~~~~~GNaR~vrn~ve~~~~~~~ 255 (287)
T CHL00181 202 LQIAKIMLEEQQYQL-TPEAEKALLDYI----------KKRMEQPLFANARSVRNALDRARMRQA 255 (287)
T ss_pred HHHHHHHHHHhcCCC-ChhHHHHHHHHH----------HHhCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999987632211 111122222211 111111111226788888888876653
No 79
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.83 E-value=1.9e-09 Score=131.92 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=39.5
Q ss_pred CChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 547 RRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 547 ~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
+.+..+.++|+.+|+||||+||||||||+||+|+|+++++|||.
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIs 1660 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFIT 1660 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEE
Confidence 44555667889999999999999999999999999999999993
No 80
>CHL00181 cbbX CbbX; Provisional
Probab=98.82 E-value=2e-09 Score=112.71 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=66.4
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCC-c--eeeecCCCCCchhhhhhhHHhhC-------Cceeec---
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCR-G--ILLFGPPGLGKQCWPRPLPKRLG-------QASLMS--- 591 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~-g--iLL~GPPGtGKT~lAkAiA~e~g-------~~fi~~--- 591 (613)
+.+++|++++|++|.+++.+ +..++.+...|+.++. | +||+||||||||++|+++|..+. .+|+..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 44899999999999999988 6667777777776543 4 89999999999999999999852 244421
Q ss_pred -cCCCcchHHHHHHHHHHHHhh
Q 007208 592 -PCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 592 -v~~~~lge~e~~Ir~IF~~A~ 612 (613)
..+.++|.++.+++++|+.|.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~ 122 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM 122 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc
Confidence 123456777778888888764
No 81
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.1e-09 Score=113.55 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=64.3
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
-+|+.|.--.+.|+.|.+-+...++..+.|++.|....||.|||||||||||+++.|+|++++..++
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIy 264 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIY 264 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceE
Confidence 7899999999999999999999999999999999999999999999999999999999999999887
No 82
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.80 E-value=3.2e-09 Score=110.90 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=67.4
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCC---CCceeeecCCCCCchhhhhhhHHhhC-------Cceeecc----
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKP---CRGILLFGPPGLGKQCWPRPLPKRLG-------QASLMSP---- 592 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~---~~giLL~GPPGtGKT~lAkAiA~e~g-------~~fi~~v---- 592 (613)
+++|++++|+.|.+++.+ +..++.+...|+.+ ..++||+||||||||++|+++|..+. -+|+...
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999998 77888888777764 34799999999999999999998763 2555221
Q ss_pred CCCcchHHHHHHHHHHHHhh
Q 007208 593 CLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 593 ~~~~lge~e~~Ir~IF~~A~ 612 (613)
.+.+.|.++.+++++|+.|.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~ 121 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM 121 (284)
T ss_pred hHhhcccchHHHHHHHHHcc
Confidence 22356777788999998874
No 83
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.80 E-value=4.6e-09 Score=108.07 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCC---CCceeeecCCCCCchhhhhhhHHhh---C----Cceee----
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKP---CRGILLFGPPGLGKQCWPRPLPKRL---G----QASLM---- 590 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~---~~giLL~GPPGtGKT~lAkAiA~e~---g----~~fi~---- 590 (613)
.++++|++++|+.|++++.++..+.... ..|+.+ ...+||+||||||||++|+++|+++ + .+++.
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 5689999999999999998865543322 334443 3368999999999999999999874 2 23331
Q ss_pred ccCCCcchHHHHHHHHHHHHhh
Q 007208 591 SPCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 591 ~v~~~~lge~e~~Ir~IF~~A~ 612 (613)
...+.++|++...++++|++|.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~ 105 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL 105 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc
Confidence 1234567788889999998864
No 84
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.77 E-value=1.3e-07 Score=98.87 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=59.0
Q ss_pred CCEEEEEccchhhhhh------hhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 264 SPIVVYLRDVDKLIFK------SQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~------s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
.+.||||||++.+... ..+....|...++...+.++||++...+.......++..+.++|+..|++++++.+++
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 6689999999985322 1344555666666666667666643221111112347889999999999999999999
Q ss_pred HHHHHHHHHH
Q 007208 338 LVSWKSQLEE 347 (613)
Q Consensus 338 l~Ilk~~L~~ 347 (613)
..||+.++.+
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 85
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.67 E-value=2.8e-08 Score=100.09 Aligned_cols=74 Identities=27% Similarity=0.458 Sum_probs=48.6
Q ss_pred CchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 504 DNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 504 ~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
+..++.+++|.. |+|+.|+++++..++-++.. .+..+ .+...+|||||||||||+||..||++
T Consensus 11 ~~~l~~~lRP~~---------L~efiGQ~~l~~~l~i~i~a-------a~~r~-~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 11 EAPLAERLRPKS---------LDEFIGQEHLKGNLKILIRA-------AKKRG-EALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp -S-HHHHTS-SS---------CCCS-S-HHHHHHHHHHHHH-------HHCTT-S---EEEEESSTTSSHHHHHHHHHHH
T ss_pred chhhHHhcCCCC---------HHHccCcHHHHhhhHHHHHH-------HHhcC-CCcceEEEECCCccchhHHHHHHHhc
Confidence 445666666554 78999999999998766654 11111 34457999999999999999999999
Q ss_pred hCCceeeccCCC
Q 007208 584 LGQASLMSPCLP 595 (613)
Q Consensus 584 ~g~~fi~~v~~~ 595 (613)
++.+|. ...++
T Consensus 74 ~~~~~~-~~sg~ 84 (233)
T PF05496_consen 74 LGVNFK-ITSGP 84 (233)
T ss_dssp CT--EE-EEECC
T ss_pred cCCCeE-eccch
Confidence 999997 34444
No 86
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.5e-07 Score=103.84 Aligned_cols=87 Identities=15% Similarity=0.304 Sum_probs=64.1
Q ss_pred HHHHhhhcCCCEEEEEccchhhhhhh------hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEE
Q 007208 255 RVLCYVSKTSPIVVYLRDVDKLIFKS------QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIE 328 (613)
Q Consensus 255 evl~s~s~~~P~IL~idDiD~~l~~s------~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~Ie 328 (613)
.|+.+..++.++|||||++..++... -+..++|+=+|.. |-+-+||+.+++-....-.-|.++.|+|+ .|.
T Consensus 253 ~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~ 329 (786)
T COG0542 253 AVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYRKYIEKDAALERRFQ-KVL 329 (786)
T ss_pred HHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHHHHHhhhchHHHhcCc-eee
Confidence 45556666679999999999977432 2355556655543 55778998887643333445789999996 789
Q ss_pred eCCCChHHHHHHHHHH
Q 007208 329 IRPPEDENHLVSWKSQ 344 (613)
Q Consensus 329 I~~P~ee~Rl~Ilk~~ 344 (613)
+.-|+.++-..||+-+
T Consensus 330 V~EPs~e~ti~ILrGl 345 (786)
T COG0542 330 VDEPSVEDTIAILRGL 345 (786)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999865
No 87
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.7e-08 Score=105.38 Aligned_cols=95 Identities=23% Similarity=0.246 Sum_probs=71.4
Q ss_pred cCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhc-CCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee------
Q 007208 517 PSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL------ 589 (613)
Q Consensus 517 ~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~-~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi------ 589 (613)
+..+-.--|+.+.--..+|+.+..++...++..+.-.. .-+...|=||||||||||||+||+|+|+.+.+...
T Consensus 133 Pa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~ 212 (423)
T KOG0744|consen 133 PAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKG 212 (423)
T ss_pred cchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccc
Confidence 33333445888887788999999998876666655443 23445667999999999999999999999876643
Q ss_pred -------eccCCCcchHHHHHHHHHHHHh
Q 007208 590 -------MSPCLPSLPNGLVRMRRMFELY 611 (613)
Q Consensus 590 -------~~v~~~~lge~e~~Ir~IF~~A 611 (613)
.+..+.|.+|+-+.|.++|++.
T Consensus 213 ~liEinshsLFSKWFsESgKlV~kmF~kI 241 (423)
T KOG0744|consen 213 QLIEINSHSLFSKWFSESGKLVAKMFQKI 241 (423)
T ss_pred eEEEEehhHHHHHHHhhhhhHHHHHHHHH
Confidence 1334567888899999999875
No 88
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.56 E-value=4e-08 Score=88.66 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=42.3
Q ss_pred eeeecCCCCCchhhhhhhHHhhCCceeeccC----CCcchHHHHHHHHHHHHhh
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQASLMSPC----LPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~----~~~lge~e~~Ir~IF~~A~ 612 (613)
|||+||||||||++|+++|+.++.+|+.... +.+.+++++.++++|+.|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAK 54 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999983222 2356788999999999874
No 89
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.52 E-value=8.3e-08 Score=102.96 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=54.3
Q ss_pred ccccccccHHHHH---HHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCCcchHH
Q 007208 524 TFADIGALEEIKE---SLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLPSLPNG 600 (613)
Q Consensus 524 ~~ddIgGl~~vk~---~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~~lge~ 600 (613)
+++|+.|+++... .|..+|.. ....+++||||||||||++|+.||...+.+|. .+.+ +..+
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~-~~sA--v~~g 85 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFE-ALSA--VTSG 85 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceE-Eecc--cccc
Confidence 4678888887753 33444332 23457999999999999999999999999998 2222 2345
Q ss_pred HHHHHHHHHHhh
Q 007208 601 LVRMRRMFELYS 612 (613)
Q Consensus 601 e~~Ir~IF~~A~ 612 (613)
-+.||++|++|.
T Consensus 86 vkdlr~i~e~a~ 97 (436)
T COG2256 86 VKDLREIIEEAR 97 (436)
T ss_pred HHHHHHHHHHHH
Confidence 678999999884
No 90
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.51 E-value=1.4e-07 Score=102.97 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=64.2
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcC-CCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC-----Ccch-H
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGG-LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL-----PSLP-N 599 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~-~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~-----~~lg-e 599 (613)
.|.|+++.++.+...+....++..+.... .-.++++|||+||||||||++|+++|..+++||+..-.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47899999999988776543333222111 122468999999999999999999999999999943322 3666 5
Q ss_pred HHHHHHHHHHHhh
Q 007208 600 GLVRMRRMFELYS 612 (613)
Q Consensus 600 ~e~~Ir~IF~~A~ 612 (613)
.+..+|++|+.|.
T Consensus 93 vE~i~r~l~e~A~ 105 (441)
T TIGR00390 93 VESMVRDLTDAAV 105 (441)
T ss_pred HHHHHHHHHHHHH
Confidence 7889999999884
No 91
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.47 E-value=3.6e-06 Score=99.50 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=57.0
Q ss_pred hhcCCCEEEEEccchhhhhhhh-HHHHHHHHHHHh-----hc----------CcEEEEeeeeccCCCCccccchHhhccC
Q 007208 260 VSKTSPIVVYLRDVDKLIFKSQ-RTYNLFQKMMKK-----LL----------ASVLILGSRIVDLSNDQREVDGRVTALF 323 (613)
Q Consensus 260 ~s~~~P~IL~idDiD~~l~~s~-r~~~~l~~~l~~-----l~----------g~VlIiGS~~~ds~~~~~~v~~~l~~lF 323 (613)
+....| ||+|||+|++..+.+ ..++.|..+|+. +. ++|++|++ +|....+++.+.++|
T Consensus 411 ~~~~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~T-----tN~~~~i~~~L~~R~ 484 (775)
T TIGR00763 411 AKTKNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIAT-----ANSIDTIPRPLLDRM 484 (775)
T ss_pred hCcCCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEe-----cCCchhCCHHHhCCe
Confidence 334566 789999999765322 234445555542 11 35666664 456678999999999
Q ss_pred CceEEeCCCChHHHHHHHHHHHH
Q 007208 324 PYNIEIRPPEDENHLVSWKSQLE 346 (613)
Q Consensus 324 ~~~IeI~~P~ee~Rl~Ilk~~L~ 346 (613)
. .|+++.|+.+++.+||+.+|.
T Consensus 485 ~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 485 E-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred e-EEecCCCCHHHHHHHHHHHHH
Confidence 5 799999999999999998874
No 92
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.45 E-value=4.9e-06 Score=88.48 Aligned_cols=61 Identities=23% Similarity=0.251 Sum_probs=46.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 64 TFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 64 sf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
+|++|-+- ++.+..|....-..... ....+++||+||++++++.||+++|+++++++...+
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~ 83 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITS 83 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 69999888 88888776665432222 123467999999999999999999999997765443
No 93
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.42 E-value=1.6e-05 Score=87.13 Aligned_cols=85 Identities=20% Similarity=0.339 Sum_probs=68.3
Q ss_pred CCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHH
Q 007208 41 AVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQML 120 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~L 120 (613)
..++.++.++|.+.|+-- ++.|..|..|++-|.+...+..-.+ -.-..++|||.||+++++++|
T Consensus 3 ~~~p~~I~~~Ld~~IiGQ---------------e~AkkalavAl~~~~~r~~l~~~~~-~e~~~~~ILliGp~G~GKT~L 66 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQ---------------DDAKRAVAIALRNRWRRMQLPEELR-DEVTPKNILMIGPTGVGKTEI 66 (443)
T ss_pred CCCHHHHHHHhccccCCH---------------HHHHHHHHHHHHHHHHHhcCCcccc-cccCCceEEEECCCCCCHHHH
Confidence 467888888888877755 7899999999999877654432111 112347899999999999999
Q ss_pred HHHHHhhhCCeEEEeecccch
Q 007208 121 AKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 121 aKALA~~f~a~LL~lD~~d~~ 141 (613)
||+||+.++++++.+|.+.|.
T Consensus 67 Ar~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 67 ARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred HHHHHHHhCChheeecchhhc
Confidence 999999999999999998886
No 94
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.40 E-value=2.1e-05 Score=86.14 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHH
Q 007208 42 VTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLA 121 (613)
Q Consensus 42 ~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~La 121 (613)
+||.++.++|.+.||=- ++.|..|.-|++-|.+...+.+-.++ ...+++|||.||+++++++||
T Consensus 1 ltP~~I~~~Ld~~IiGQ---------------~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQ---------------DNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTGVGKTEIA 64 (441)
T ss_pred CCHHHHHHHHhhhccCH---------------HHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCCCCHHHHH
Confidence 46778888877776644 78999999999999776554332222 223478999999999999999
Q ss_pred HHHHhhhCCeEEEeecccch
Q 007208 122 KALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 122 KALA~~f~a~LL~lD~~d~~ 141 (613)
|+||+.++++++-+|++.|.
T Consensus 65 raLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 65 RRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred HHHHHHhCCeEEEeecceee
Confidence 99999999999999998886
No 95
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.38 E-value=1.3e-05 Score=88.94 Aligned_cols=80 Identities=21% Similarity=0.362 Sum_probs=54.5
Q ss_pred CCEEEEEccchhhhhhh---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFKS---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl 338 (613)
.+-+|+|||++.+.... ..+++.|..+.+. +..+|++++... .....+++++..+|. ..++|++|+.++|.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p--~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPP--KELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCH--HHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 56799999999954432 2466666555554 334666653311 112236788888886 58999999999999
Q ss_pred HHHHHHHHH
Q 007208 339 VSWKSQLEE 347 (613)
Q Consensus 339 ~Ilk~~L~~ 347 (613)
+|++..++.
T Consensus 287 ~il~~~~~~ 295 (450)
T PRK00149 287 AILKKKAEE 295 (450)
T ss_pred HHHHHHHHH
Confidence 999987653
No 96
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.36 E-value=4.1e-07 Score=99.36 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=63.6
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCC-CCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC-----Ccch-H
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLL-KPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL-----PSLP-N 599 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i-~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~-----~~lg-e 599 (613)
.|.|++++++.+..++....++..+...... ..++++||+||||||||++|+++|..+++||+..-.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4789999999998887553333322221110 1257899999999999999999999999999944322 3667 5
Q ss_pred HHHHHHHHHHHhh
Q 007208 600 GLVRMRRMFELYS 612 (613)
Q Consensus 600 ~e~~Ir~IF~~A~ 612 (613)
.+..+|++|+.|.
T Consensus 96 ~e~~ir~L~~~A~ 108 (443)
T PRK05201 96 VESIIRDLVEIAV 108 (443)
T ss_pred HHHHHHHHHHHHH
Confidence 5789999999884
No 97
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.34 E-value=1.1e-05 Score=88.73 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccc-cCCCCCCCceEeecchhHHHHH
Q 007208 41 AVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYT-RNLSPASQAILLSGPAELYQQM 119 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~-~~L~~~~~~ILLsGP~e~yqe~ 119 (613)
-.++.++++.|.+.||-. |+.|..|.-++|-|.+.-...... .+.....+.|||.||++.++++
T Consensus 59 ~~~p~~i~~~L~~~ViGq---------------~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~ 123 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQ---------------ERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTL 123 (412)
T ss_pred CCCHHHHHHHHhhHeeCh---------------HHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHH
Confidence 345566665555554433 788999999998887764321111 1334467889999999999999
Q ss_pred HHHHHHhhhCCeEEEeecccch
Q 007208 120 LAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 120 LaKALA~~f~a~LL~lD~~d~~ 141 (613)
|||+||+.++.+|+.+|...+.
T Consensus 124 lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 124 LAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred HHHHHHHHhCCCceecchhhcc
Confidence 9999999999999999987764
No 98
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.1e-06 Score=94.40 Aligned_cols=87 Identities=18% Similarity=0.394 Sum_probs=62.8
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC--cchH
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP--SLPN 599 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~--~lge 599 (613)
+-.+++|+........|.++... ..+. .....|.+.|||||||||||||+|+-||..+|+.+-....+. -+|.
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~a-TaNT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~ 425 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIA-TANT----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGA 425 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHH-hccc----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccch
Confidence 34477888878888888776654 2222 223457788999999999999999999999999987333332 3443
Q ss_pred -HHHHHHHHHHHhhC
Q 007208 600 -GLVRMRRMFELYSR 613 (613)
Q Consensus 600 -~e~~Ir~IF~~A~r 613 (613)
.-..|.+||+-|.+
T Consensus 426 qaVTkiH~lFDWakk 440 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKK 440 (630)
T ss_pred HHHHHHHHHHHHHhh
Confidence 34599999997754
No 99
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.27 E-value=3.5e-05 Score=84.74 Aligned_cols=67 Identities=27% Similarity=0.432 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhcCCCcc--cccc-cCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 74 GQTRALLTSAAYVHLKHTEV--SKYT-RNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 74 e~tk~~L~~~a~~hL~~~~~--~k~~-~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
|+.+..|.-|+|-|.+.-.. .... .+..-...+|||.||++.++++|||+||+.+++++..+|...+
T Consensus 83 e~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 83 EQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 78899999999988877322 0100 1122345789999999999999999999999999988887655
No 100
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.26 E-value=1.4e-05 Score=83.68 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=45.0
Q ss_pred ccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 64 TFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 64 sf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
||++|=.- ++.+..|..........+ ...+.+||+||+++++++||+++|++++.++..++
T Consensus 2 ~~~~~iG~--~~~~~~l~~~l~~~~~~~----------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 2 LLAEFIGQ--EKVKEQLQLFIEAAKMRQ----------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CHHHHcCH--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 57777777 788887777664332221 23456999999999999999999999987655443
No 101
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.25 E-value=3.3e-06 Score=99.76 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=56.7
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC------------
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL------------ 594 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~------------ 594 (613)
++.|++++++.|.+++..+...+ . .....+||+||||||||++|++||..++.+|+....+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~-~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------K-MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 68899999999999876532221 1 1223699999999999999999999999999843222
Q ss_pred -CcchHHHHHHHHHHHHh
Q 007208 595 -PSLPNGLVRMRRMFELY 611 (613)
Q Consensus 595 -~~lge~e~~Ir~IF~~A 611 (613)
.|+|....++++.|..+
T Consensus 394 ~~~~g~~~g~i~~~l~~~ 411 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKA 411 (775)
T ss_pred CceeCCCCchHHHHHHHh
Confidence 23444455777777665
No 102
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.25 E-value=8.1e-05 Score=79.69 Aligned_cols=154 Identities=13% Similarity=0.144 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHH--HHhhc-CcEEEEeeeeccCCCCccccchHhhccC-C
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKM--MKKLL-ASVLILGSRIVDLSNDQREVDGRVTALF-P 324 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~--l~~l~-g~VlIiGS~~~ds~~~~~~v~~~l~~lF-~ 324 (613)
.++.+++.+. ....|.||+|||+|.+....+.+...|... ....+ .+|.+|+.... ..-...++.++.++| +
T Consensus 116 ~~~~l~~~l~--~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~--~~~~~~l~~~~~s~~~~ 191 (365)
T TIGR02928 116 VFRRLYKELN--ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND--LKFRENLDPRVKSSLCE 191 (365)
T ss_pred HHHHHHHHHH--hcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC--cchHhhcCHHHhccCCc
Confidence 3455555443 235789999999999764444432223222 22333 45655553211 111234667777666 4
Q ss_pred ceEEeCCCChHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhh
Q 007208 325 YNIEIRPPEDENHLVSWKSQLEEDMKM-MQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLM 403 (613)
Q Consensus 325 ~~IeI~~P~ee~Rl~Ilk~~L~~d~k~-~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~ 403 (613)
..|.++|++.++..+|++..++..... .-.++-+. .|.++...+.+| .+.+-.++..|...+..
T Consensus 192 ~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~-----------~i~~~~~~~~Gd----~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 192 EEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIP-----------LCAALAAQEHGD----ARKAIDLLRVAGEIAER 256 (365)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHH-----------HHHHHHHHhcCC----HHHHHHHHHHHHHHHHH
Confidence 789999999999999999876421100 00000000 112222233343 23555566677666543
Q ss_pred cCCCcccCCCceeechhhHHhhhhhh
Q 007208 404 NNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 404 ~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
++ .-.|+.+++..|++.+
T Consensus 257 ~~--------~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 257 EG--------AERVTEDHVEKAQEKI 274 (365)
T ss_pred cC--------CCCCCHHHHHHHHHHH
Confidence 32 2348888998888755
No 103
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.25 E-value=1.8e-05 Score=80.84 Aligned_cols=160 Identities=16% Similarity=0.264 Sum_probs=117.7
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhC---CeEEEeecc
Q 007208 62 NITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFE---AKLLLLDVT 138 (613)
Q Consensus 62 ~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~---a~LL~lD~~ 138 (613)
.|.+++.=+| |..|..|+.-+..+++-.+ ...+||.|+.+.++..|||||.++|. -+|+-|+-.
T Consensus 23 ~~~l~~L~Gi--e~Qk~~l~~Nt~~Fl~G~p-----------annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 23 PIRLDDLIGI--ERQKEALIENTEQFLQGLP-----------ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCHHHhcCH--HHHHHHHHHHHHHHHcCCC-----------CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 4678899999 9999999999987777633 34599999999999999999999774 455555554
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
++.
T Consensus 90 ~L~----------------------------------------------------------------------------- 92 (249)
T PF05673_consen 90 DLG----------------------------------------------------------------------------- 92 (249)
T ss_pred Hhc-----------------------------------------------------------------------------
Confidence 442
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHHh----h
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKK----L 294 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~----l 294 (613)
-+..|++++. ....+.|||+||+. +......|..|+.+|+. -
T Consensus 93 ------------------------------~l~~l~~~l~--~~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~ 138 (249)
T PF05673_consen 93 ------------------------------DLPELLDLLR--DRPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEAR 138 (249)
T ss_pred ------------------------------cHHHHHHHHh--cCCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccC
Confidence 1223344433 13578999999975 56666788889999984 5
Q ss_pred cCcEEEEeeeec---------cCC-------CCccccchH--hhccCCceEEeCCCChHHHHHHHHHHH
Q 007208 295 LASVLILGSRIV---------DLS-------NDQREVDGR--VTALFPYNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 295 ~g~VlIiGS~~~---------ds~-------~~~~~v~~~--l~~lF~~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
|.+|+|.++.+. |.. +..+.+++. |..+|.-.|...+|+.++=++|.+.++
T Consensus 139 P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 139 PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred CCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHH
Confidence 688988886442 111 122334444 467999999999999999999999875
No 104
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.23 E-value=9.2e-07 Score=92.48 Aligned_cols=58 Identities=29% Similarity=0.476 Sum_probs=47.5
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+|+|+.|.+++++.|..++...... -..+..++|+||||||||++|+++|++++.++.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~ 59 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK 59 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6999999999999998887541111 133567999999999999999999999998875
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=1.5e-06 Score=95.03 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=50.5
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.|++|+|.+++++.|+..+..+..++..+ +...+.++||+||||+|||++|+++|..+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---GSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 49999999999999999998866554443 23457899999999999999999999986543
No 106
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.23 E-value=4.7e-05 Score=83.35 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=53.2
Q ss_pred CCEEEEEccchhhhhhh---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFKS---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl 338 (613)
.+-+|+|||++.+.... ..+++.|..+.+. +..+|+++.... .....+++++..+|. ..|+|++|+.++|.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~~~iiits~~~p--~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN--GKQIVLTSDRPP--KELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCCEEEecCCCH--HHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 35699999999854331 2366666655543 344556543211 122336778888886 47999999999999
Q ss_pred HHHHHHHHH
Q 007208 339 VSWKSQLEE 347 (613)
Q Consensus 339 ~Ilk~~L~~ 347 (613)
.|++..++.
T Consensus 275 ~il~~~~~~ 283 (405)
T TIGR00362 275 AILQKKAEE 283 (405)
T ss_pred HHHHHHHHH
Confidence 999987654
No 107
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.22 E-value=1.1e-06 Score=90.82 Aligned_cols=64 Identities=31% Similarity=0.467 Sum_probs=51.2
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP 595 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~ 595 (613)
-+|+|..|++++|+.++-++...-.+ -.....+|||||||.|||+||..||+|+|.++- ..++|
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k-~tsGp 86 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLK-ITSGP 86 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE-ecccc
Confidence 34889999999999998887652221 134567999999999999999999999999986 44554
No 108
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.15 E-value=3.7e-05 Score=80.84 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=54.5
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
.+-||+|||+|.+-. .+....|...++..+.++.+|.+ ++....+.+.+.++|. .+++++|+.++|..+++.
T Consensus 100 ~~~vliiDe~d~l~~--~~~~~~L~~~le~~~~~~~~Ilt-----~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGL--ADAQRHLRSFMEAYSKNCSFIIT-----ANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccC--HHHHHHHHHHHHhcCCCceEEEE-----cCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHH
Confidence 578999999999512 22344566777887776644443 2344678889999995 789999999999998887
Q ss_pred HHH
Q 007208 344 QLE 346 (613)
Q Consensus 344 ~L~ 346 (613)
.+.
T Consensus 172 ~~~ 174 (316)
T PHA02544 172 MIV 174 (316)
T ss_pred HHH
Confidence 554
No 109
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.14 E-value=4.9e-06 Score=88.45 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=51.9
Q ss_pred ccccccccccHHHHHH---HHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCCcch
Q 007208 522 SVTFADIGALEEIKES---LQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLPSLP 598 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~---l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~~lg 598 (613)
.-+.+|..|++++..+ |+.+|+. ...-+++|.||||||||+||+.||+-..-+-+..+...-.-
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 3457777777765432 2333322 23457999999999999999999998877722112222223
Q ss_pred HHHHHHHHHHHHhhC
Q 007208 599 NGLVRMRRMFELYSR 613 (613)
Q Consensus 599 e~e~~Ir~IF~~A~r 613 (613)
.+-+.+|+||++|.+
T Consensus 201 a~t~dvR~ife~aq~ 215 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQN 215 (554)
T ss_pred cchHHHHHHHHHHHH
Confidence 445789999998864
No 110
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.13 E-value=0.00038 Score=75.44 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhh-hhHHHHHHHHHHHhhcC-cEEEEeeeeccCCCCccccchHhhccC-Cc
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFK-SQRTYNLFQKMMKKLLA-SVLILGSRIVDLSNDQREVDGRVTALF-PY 325 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~-s~r~~~~l~~~l~~l~g-~VlIiGS~~~ds~~~~~~v~~~l~~lF-~~ 325 (613)
+++.+.+.+.+ ...|.||+|||+|.+... .++....|...++.+.+ +|.+|+.... .+-...++..+..+| +.
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~--~~~~~~l~~~~~s~~~~~ 200 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD--LTFLYILDPRVKSVFRPE 200 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC--cchhhhcCHHHHhcCCcc
Confidence 44555554432 357899999999997622 23333333344555554 5544443211 111123556665555 57
Q ss_pred eEEeCCCChHHHHHHHHHHHH
Q 007208 326 NIEIRPPEDENHLVSWKSQLE 346 (613)
Q Consensus 326 ~IeI~~P~ee~Rl~Ilk~~L~ 346 (613)
.|.+++++.++..+||+..++
T Consensus 201 ~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 201 EIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred eeecCCCCHHHHHHHHHHHHH
Confidence 899999999999999998764
No 111
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.08 E-value=4.1e-06 Score=92.03 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=53.4
Q ss_pred cccccccccHHHHHH---HHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCCcchH
Q 007208 523 VTFADIGALEEIKES---LQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLPSLPN 599 (613)
Q Consensus 523 v~~ddIgGl~~vk~~---l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~~lge 599 (613)
-+++|+.|.+++.+. |..++.. .....+||+||||||||++|+++|+..+.+|+. +.... .
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~-l~a~~--~ 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA-LSAVT--S 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-Eeccc--c
Confidence 457899999988665 7766643 123479999999999999999999999999883 22222 2
Q ss_pred HHHHHHHHHHHh
Q 007208 600 GLVRMRRMFELY 611 (613)
Q Consensus 600 ~e~~Ir~IF~~A 611 (613)
+...++++++.+
T Consensus 73 ~~~~ir~ii~~~ 84 (413)
T PRK13342 73 GVKDLREVIEEA 84 (413)
T ss_pred cHHHHHHHHHHH
Confidence 345667777665
No 112
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.07 E-value=3.3e-06 Score=89.83 Aligned_cols=58 Identities=26% Similarity=0.461 Sum_probs=47.8
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+|+++.|.+++++.+...+... ... -.++..+|||||||||||++|+++|++++.++.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~-------~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAA-------KKR-GEALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHH-------Hhc-CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 5889999999999998877541 111 134678999999999999999999999998876
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=98.06 E-value=6.5e-05 Score=84.29 Aligned_cols=64 Identities=25% Similarity=0.284 Sum_probs=48.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 64 TFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 64 sf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
+|+++-+. +..+..|...+--+.+. ...+.+||+||+++++++||+|||++++..++.++++|+
T Consensus 12 ~l~dlvg~--~~~~~~l~~~l~~~~~g-----------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 12 TLSDVVGN--EKAKEQLREWIESWLKG-----------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred CHHHhcCC--HHHHHHHHHHHHHHhcC-----------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 45555554 77777777776443321 115779999999999999999999999999988888764
No 114
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.6e-06 Score=91.49 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=43.8
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+||.|.+++++.|...+.. + ..+.++||+||||||||++|+++|+.++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-----------~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-----------N-SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4588999999999988877654 1 34567999999999999999999999865
No 115
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.04 E-value=8.9e-05 Score=87.27 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=59.4
Q ss_pred cccccCCCCCC----CCCCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCC
Q 007208 28 TMSKWAGNNPS----PNAVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPA 103 (613)
Q Consensus 28 ~~~~~~~~~~~----~~~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~ 103 (613)
.+++|+|-.-. ...-....+++.|+++|+-- ++.+..|..+...+... +.. -..+
T Consensus 429 v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ---------------~~ai~~l~~~i~~~~~g--l~~----~~kp 487 (758)
T PRK11034 429 VVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQ---------------DKAIEALTEAIKMSRAG--LGH----EHKP 487 (758)
T ss_pred HHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCc---------------HHHHHHHHHHHHHHhcc--ccC----CCCC
Confidence 46667664422 11112234556666665433 56666777766544221 100 0122
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
...+||.||++++++.|||+||+.++.+|+.+|...|.
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~ 525 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhc
Confidence 34689999999999999999999999999999988774
No 116
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.02 E-value=8e-06 Score=87.85 Aligned_cols=81 Identities=22% Similarity=0.170 Sum_probs=57.4
Q ss_pred cc-cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC-------ceeeccC---
Q 007208 525 FA-DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ-------ASLMSPC--- 593 (613)
Q Consensus 525 ~d-dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~-------~fi~~v~--- 593 (613)
|+ ++.|++++++++.+.+.... .+.+ ...+.++|+||||||||++|++||..++. +++....
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA------QGLE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH------hcCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 55 89999999988887765422 1111 23467899999999999999999999987 8874433
Q ss_pred -CC----cchHHHHHHHHHHHHhh
Q 007208 594 -LP----SLPNGLVRMRRMFELYS 612 (613)
Q Consensus 594 -~~----~lge~e~~Ir~IF~~A~ 612 (613)
+| .++-....+|+.|.+.+
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~~ 145 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDEY 145 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHHh
Confidence 33 24444567777776543
No 117
>PRK04195 replication factor C large subunit; Provisional
Probab=98.00 E-value=9.6e-06 Score=90.90 Aligned_cols=60 Identities=32% Similarity=0.539 Sum_probs=49.8
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
+.+++||.|.+++++.|.+++.. +.. | .+++.+|||||||||||++|+++|++++.+++.
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~-------~~~-g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIES-------WLK-G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHH-------Hhc-C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 34588999999999999998854 111 1 346789999999999999999999999998883
No 118
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.00 E-value=0.00034 Score=69.62 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=47.5
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhC---CeEEEeec
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFE---AKLLLLDV 137 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~---a~LL~lD~ 137 (613)
..-|||+|=+--.+++...|...+. ....+.|+|+||++.+++.||+++|+++. .+++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA---------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 3468898853345667777776543 12346699999999999999999999873 56676766
Q ss_pred ccch
Q 007208 138 TDFS 141 (613)
Q Consensus 138 ~d~~ 141 (613)
.++.
T Consensus 75 ~~~~ 78 (226)
T TIGR03420 75 AELA 78 (226)
T ss_pred HHHH
Confidence 5553
No 119
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=6e-05 Score=83.68 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=53.2
Q ss_pred CCCEEEEEccchhhhhhh---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHH
Q 007208 263 TSPIVVYLRDVDKLIFKS---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENH 337 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~R 337 (613)
.+|-||+|||++.++... .+++..|..+.+. +..+|+++... ......+.+++..+|. ..++|++|+.+.|
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~--p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDRE--PQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCC--HHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 368899999999965432 3466666555553 34566654211 1112335667777664 5788999999999
Q ss_pred HHHHHHHHH
Q 007208 338 LVSWKSQLE 346 (613)
Q Consensus 338 l~Ilk~~L~ 346 (613)
..|+++.++
T Consensus 269 ~~IL~~~~~ 277 (440)
T PRK14088 269 KKIARKMLE 277 (440)
T ss_pred HHHHHHHHH
Confidence 999998754
No 120
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.98 E-value=1.1e-05 Score=94.72 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=57.5
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh----------CCceeecc--
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL----------GQASLMSP-- 592 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~----------g~~fi~~v-- 592 (613)
++++.|.++..+.+.+.+.. ....++||+||||||||++|+++|..+ +..++...
T Consensus 181 l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~ 247 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG 247 (731)
T ss_pred CCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH
Confidence 56788988888877665533 234579999999999999999999987 55565211
Q ss_pred ----CCCcchHHHHHHHHHHHHhh
Q 007208 593 ----CLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 593 ----~~~~lge~e~~Ir~IF~~A~ 612 (613)
...+.|+.+++++++|+.+.
T Consensus 248 ~l~a~~~~~g~~e~~l~~i~~~~~ 271 (731)
T TIGR02639 248 SLLAGTKYRGDFEERLKAVVSEIE 271 (731)
T ss_pred HHhhhccccchHHHHHHHHHHHHh
Confidence 13577888999999999874
No 121
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.98 E-value=8.1e-06 Score=89.78 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=54.6
Q ss_pred ccccHHHHHHHHHHHHCcCCChhhhhc--CCC-CCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC-----CcchH
Q 007208 528 IGALEEIKESLQELVMLPLRRPDLFKG--GLL-KPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL-----PSLPN 599 (613)
Q Consensus 528 IgGl~~vk~~l~e~v~~pl~~pe~~~~--~~i-~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~-----~~lge 599 (613)
|.|++++++.+...+..+.++-..... ..+ .+..++||+||||||||++|+++|..++.||+....+ .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 789999999998777543322211100 011 2346799999999999999999999999999843322 35565
Q ss_pred HH-HHHHHHHH
Q 007208 600 GL-VRMRRMFE 609 (613)
Q Consensus 600 ~e-~~Ir~IF~ 609 (613)
.. ..++.+++
T Consensus 153 d~e~~l~~l~~ 163 (412)
T PRK05342 153 DVENILLKLLQ 163 (412)
T ss_pred hHHHHHHHHHH
Confidence 43 34455554
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.98 E-value=6.4e-06 Score=86.04 Aligned_cols=51 Identities=24% Similarity=0.465 Sum_probs=42.1
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
-+|+++.|++.+.+.|...+.. ..- -.+|||||||||||+.|+++|.++..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~-----------~~l--p~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR-----------RIL--PHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh-----------cCC--ceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4588999999999999887743 111 24899999999999999999999865
No 123
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00013 Score=79.86 Aligned_cols=202 Identities=15% Similarity=0.220 Sum_probs=145.7
Q ss_pred cccccccccc---------cccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCe
Q 007208 61 SNITFDEFPY---------YLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAK 131 (613)
Q Consensus 61 i~vsf~~fpY---------yLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~ 131 (613)
-.-.|..||+ .+....|+.+++-..--++.+++ |.+.=-+=.|+-||+|||+.++..++=|+|.|++
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~--YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~-- 260 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDF--YKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN-- 260 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchH--HHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC--
Confidence 3556777776 57899999999999999999998 6666667889999999999999999999999865
Q ss_pred EEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcc
Q 007208 132 LLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPA 211 (613)
Q Consensus 132 LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (613)
.|+|||. +++..
T Consensus 261 ---ydIydLe-------------------Lt~v~---------------------------------------------- 272 (457)
T KOG0743|consen 261 ---YDIYDLE-------------------LTEVK---------------------------------------------- 272 (457)
T ss_pred ---CceEEee-------------------ecccc----------------------------------------------
Confidence 6777763 00000
Q ss_pred ccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhH---------
Q 007208 212 LRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQR--------- 282 (613)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r--------- 282 (613)
.+ ..|-.++... ..-+||+|.|||..+.-+.|
T Consensus 273 --------------------------------~n-----~dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~ 313 (457)
T KOG0743|consen 273 --------------------------------LD-----SDLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFE 313 (457)
T ss_pred --------------------------------Cc-----HHHHHHHHhC--CCCcEEEEeeccccccccccccccccccc
Confidence 00 0122333333 35699999999998753211
Q ss_pred ------HHHHHHHHHHhhcC-----cEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHH
Q 007208 283 ------TYNLFQKMMKKLLA-----SVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDM 349 (613)
Q Consensus 283 ------~~~~l~~~l~~l~g-----~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~ 349 (613)
..+-|...+|.++. +|+|.. +|...++|.+|.| |++.||+++-...++-..+.+.+|.-+.
T Consensus 314 ~~~~~VTlSGLLNfiDGlwSscg~ERIivFT------TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~ 387 (457)
T KOG0743|consen 314 GDLSRVTLSGLLNFLDGLWSSCGDERIIVFT------TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE 387 (457)
T ss_pred CCcceeehHHhhhhhccccccCCCceEEEEe------cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 24557778888873 467775 6677899999999 9999999999999999888888874311
Q ss_pred HHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCC
Q 007208 350 KMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNE 406 (613)
Q Consensus 350 k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~ 406 (613)
...-|++++. +...+.+|++++.+ +||.++
T Consensus 388 ------------------~h~L~~eie~-l~~~~~~tPA~V~e--------~lm~~~ 417 (457)
T KOG0743|consen 388 ------------------DHRLFDEIER-LIEETEVTPAQVAE--------ELMKNK 417 (457)
T ss_pred ------------------CcchhHHHHH-HhhcCccCHHHHHH--------HHhhcc
Confidence 1223566666 55556678888743 566555
No 124
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.91 E-value=0.00054 Score=77.95 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=78.2
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHh----------------------------hcCcEEEEeeeeccCCCCccc
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKK----------------------------LLASVLILGSRIVDLSNDQRE 314 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~----------------------------l~g~VlIiGS~~~ds~~~~~~ 314 (613)
+..-||||||+|.+ ... ..+.|.+.|+. ++..+.+|++. ++++..
T Consensus 174 a~gG~L~IdEI~~L-~~~--~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~AT----t~~p~~ 246 (531)
T TIGR02902 174 AHGGVLFIDEIGEL-HPV--QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGAT----TRNPEE 246 (531)
T ss_pred cCCcEEEEechhhC-CHH--HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEe----cCCccc
Confidence 36789999999994 432 22222223321 23335555542 445667
Q ss_pred cchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHH
Q 007208 315 VDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIV 394 (613)
Q Consensus 315 v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV 394 (613)
+++++++++ .+|.++++..+++.++++..+.+.. . .++-..++.+...+ ...+++..++
T Consensus 247 L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~--i----------------~is~~al~~I~~y~--~n~Rel~nll 305 (531)
T TIGR02902 247 IPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIG--I----------------NLEKHALELIVKYA--SNGREAVNIV 305 (531)
T ss_pred CChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcC--C----------------CcCHHHHHHHHHhh--hhHHHHHHHH
Confidence 889999887 4788999999999999998764311 0 11111122111111 1357788888
Q ss_pred HHHHHhhhhcCCCcccCCCceeechhhHHhhhh
Q 007208 395 VSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLS 427 (613)
Q Consensus 395 ~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~ 427 (613)
..|..++..+ ++..|+.+++...+.
T Consensus 306 ~~Aa~~A~~~--------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 306 QLAAGIALGE--------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHhhC--------CCcEEcHHHHHHHhC
Confidence 8887655432 234699999999986
No 125
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.91 E-value=1.8e-05 Score=85.04 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=50.8
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC--CceeeccCCCcch--
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG--QASLMSPCLPSLP-- 598 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g--~~fi~~v~~~~lg-- 598 (613)
...+.+.|+.++++..--.+.+ .+. +--..+++||.||||||||.+|-+||+++| .||. .+.+.++-
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~m-------Ik~-~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~-~isgSEiyS~ 91 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDM-------IKE-GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV-SISGSEIYSS 91 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHH-------HHT-T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE-EEEGGGG-BT
T ss_pred eccccccChHHHHHHHHHHHHH-------Hhc-ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee-Ecccceeeec
Confidence 3356788999998877655544 222 222358999999999999999999999998 8998 33333322
Q ss_pred --HHHHHHHHHHHHh
Q 007208 599 --NGLVRMRRMFELY 611 (613)
Q Consensus 599 --e~e~~Ir~IF~~A 611 (613)
.+-..+.+.|++|
T Consensus 92 e~kKTE~L~qa~Rra 106 (398)
T PF06068_consen 92 EVKKTEALTQAFRRA 106 (398)
T ss_dssp TC-HHHHHHHHHHCS
T ss_pred ccCchHHHHHHHHHh
Confidence 2233666677654
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=7.7e-05 Score=85.34 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=54.0
Q ss_pred CCEEEEEccchhhhhhh---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccC--CceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFKS---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALF--PYNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF--~~~IeI~~P~ee~Rl 338 (613)
++-||+|||++.+.... ..|+++|..+.+. +.-+|+.|+.. ..+...++++|..+| .-.++|++|+++.|.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~--P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDRP--PKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCCC--hHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 57899999999964432 2366666655543 33355554321 112245788888887 566799999999999
Q ss_pred HHHHHHHHH
Q 007208 339 VSWKSQLEE 347 (613)
Q Consensus 339 ~Ilk~~L~~ 347 (613)
.||+++...
T Consensus 453 aIL~kka~~ 461 (617)
T PRK14086 453 AILRKKAVQ 461 (617)
T ss_pred HHHHHHHHh
Confidence 999987644
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.87 E-value=2.3e-05 Score=93.22 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=59.7
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC----------Cceeec--
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG----------QASLMS-- 591 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g----------~~fi~~-- 591 (613)
.|++|.|-++..+.+.+++.. ...++++|+||||||||++|+++|.... .+|+..
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 478899999988888877543 3456899999999999999999999863 455521
Q ss_pred ---c-CCCcchHHHHHHHHHHHHhh
Q 007208 592 ---P-CLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 592 ---v-~~~~lge~e~~Ir~IF~~A~ 612 (613)
+ ...+.|+.+.+|+++|+.+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~ 268 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQ 268 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHH
Confidence 1 23578899999999998764
No 128
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.0004 Score=77.85 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=54.2
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
..-||+|||+|.+-. .....|...++..++.+++|++.+ .+..+...+.+++. .+++.+|++++...+++.
T Consensus 117 ~~kVvIIDE~h~Lt~---~a~~~LLk~LE~p~~~vv~Ilatt-----n~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~ 187 (472)
T PRK14962 117 KYKVYIIDEVHMLTK---EAFNALLKTLEEPPSHVVFVLATT-----NLEKVPPTIISRCQ-VIEFRNISDELIIKRLQE 187 (472)
T ss_pred CeEEEEEEChHHhHH---HHHHHHHHHHHhCCCcEEEEEEeC-----ChHhhhHHHhcCcE-EEEECCccHHHHHHHHHH
Confidence 446999999999632 233446667777777776555422 23578888988884 899999999998888887
Q ss_pred HHHH
Q 007208 344 QLEE 347 (613)
Q Consensus 344 ~L~~ 347 (613)
.+..
T Consensus 188 i~~~ 191 (472)
T PRK14962 188 VAEA 191 (472)
T ss_pred HHHH
Confidence 6643
No 129
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=1.6e-05 Score=86.03 Aligned_cols=52 Identities=29% Similarity=0.306 Sum_probs=44.0
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+||.|.+++++.++..+.. + ..+..+||+||||||||++|+++|+++..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4589999999999999887754 2 33567899999999999999999999864
No 130
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.84 E-value=1.9e-05 Score=83.94 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=51.9
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC--CceeeccCCCcch---
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG--QASLMSPCLPSLP--- 598 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g--~~fi~~v~~~~lg--- 598 (613)
.-+-+.|+.+.++..--++.+ .+ .+.-..+|||+.||||||||.||-+||+++| .||. .+.+.++-
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~m-------ik-~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~-~isgsEiYS~E 107 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKM-------IK-QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV-AISGSEIYSLE 107 (450)
T ss_pred cCCcccchHHHHHhhhHHHHH-------HH-hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce-eeccceeeeec
Confidence 345677888777654433332 12 1334568999999999999999999999997 8998 44444332
Q ss_pred -HHHHHHHHHHHHh
Q 007208 599 -NGLVRMRRMFELY 611 (613)
Q Consensus 599 -e~e~~Ir~IF~~A 611 (613)
.+-..+.+.|++|
T Consensus 108 ~kKTE~L~qa~Rra 121 (450)
T COG1224 108 VKKTEALTQALRRA 121 (450)
T ss_pred ccHHHHHHHHHHHh
Confidence 2223455555554
No 131
>PLN03025 replication factor C subunit; Provisional
Probab=97.84 E-value=1.5e-05 Score=84.62 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=40.4
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+|+|+.|.+++.+.|+.++.. + .. ..+|||||||||||++|+++|+++
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~-----------~-~~-~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD-----------G-NM-PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999988876543 1 11 248999999999999999999997
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.84 E-value=0.00028 Score=72.94 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 103 ASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 103 ~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
..+.|||.||++.++++||++||+.+|.+++.++.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 346799999999999999999999999999998764
No 133
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=2.8e-05 Score=89.25 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=45.0
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+||.|.+++++.|...+.. + ..+..+||+||||||||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5699999999999999888763 2 34578999999999999999999999875
No 134
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.80 E-value=0.00024 Score=78.12 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=53.0
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
....||||||+|.+-...+. .|...++. +.++++|+.+ .+....++..+.+++ ..+++++|++++...+++
T Consensus 91 g~~~vL~IDEi~~l~~~~q~---~LL~~le~--~~iilI~att---~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~ 161 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQQD---ALLPHVED--GTITLIGATT---ENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLK 161 (413)
T ss_pred CCceEEEEechhhhCHHHHH---HHHHHhhc--CcEEEEEeCC---CChhhhccHHHhccc-eeeEeCCCCHHHHHHHHH
Confidence 46789999999995332222 23334443 5677777643 233456788888888 789999999999999888
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..+..
T Consensus 162 ~~l~~ 166 (413)
T PRK13342 162 RALED 166 (413)
T ss_pred HHHHH
Confidence 77643
No 135
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=3.9e-05 Score=82.70 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=45.0
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+|+||.|.+.+++.+...+.. + ..+..+|||||||+|||++|+++|+.+..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45699999999999998888754 2 34568999999999999999999998765
No 136
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2.3e-05 Score=89.46 Aligned_cols=59 Identities=31% Similarity=0.452 Sum_probs=45.3
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP 592 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v 592 (613)
|.-||+++|++|.|++......++ ++ ..=+||+||||+|||+|+++||..+|..|+...
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~------~k-GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s 382 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK------LK-GPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS 382 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc------CC-CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe
Confidence 567999999999999876222211 11 112678999999999999999999999999543
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.74 E-value=4.9e-05 Score=79.91 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=45.8
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+++|+.|.+++++.+...+.. + ..+..+||+||||+|||++|+++|.+.+.+++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 4588999999999999888752 2 23456777999999999999999999988876
No 138
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.73 E-value=2.9e-05 Score=81.94 Aligned_cols=50 Identities=32% Similarity=0.397 Sum_probs=41.1
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+|+++.|.+++++.+..++.. + ....+||+||||||||++|+++|+++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999887653 1 112599999999999999999999874
No 139
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=2.7e-05 Score=87.87 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=45.0
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
-+|+||.|.+++++.|...+.. + ..+..+||+||||||||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-----------~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-----------Q-YLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4589999999999999988754 1 345578999999999999999999998753
No 140
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=2.6e-05 Score=87.94 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=44.5
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..+|+||.|.+++++.|+.++.. + ..+..+|||||||||||++|+++|+.+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-----------~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-----------G-RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35699999999999999988764 1 23456899999999999999999999853
No 141
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=2.8e-05 Score=86.61 Aligned_cols=52 Identities=31% Similarity=0.372 Sum_probs=43.9
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
-+|+||.|.+++.+.|...+.. + ..+..+||+||||||||++|+++|+.++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4588999999999998887764 1 23456899999999999999999999876
No 142
>PRK08116 hypothetical protein; Validated
Probab=97.71 E-value=0.00042 Score=72.15 Aligned_cols=90 Identities=17% Similarity=0.291 Sum_probs=61.8
Q ss_pred HHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHH
Q 007208 46 KMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALA 125 (613)
Q Consensus 46 ~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA 125 (613)
+++.-+....++++--+.|||||.. .+..... ...|.-.++. |. .....+..++|+||++.+++.||.|+|
T Consensus 65 ~~~~l~~~s~i~~~~~~~tFdnf~~--~~~~~~a-~~~a~~y~~~-----~~-~~~~~~~gl~l~G~~GtGKThLa~aia 135 (268)
T PRK08116 65 RIERLKSNSLLDEKFRNSTFENFLF--DKGSEKA-YKIARKYVKK-----FE-EMKKENVGLLLWGSVGTGKTYLAACIA 135 (268)
T ss_pred HHHHHHHhcCCCHHHHhcchhcccC--ChHHHHH-HHHHHHHHHH-----HH-hhccCCceEEEECCCCCCHHHHHHHHH
Confidence 4445566778888888999999983 3444332 2333322221 11 112334569999999999999999999
Q ss_pred hhh---CCeEEEeecccchhhh
Q 007208 126 HFF---EAKLLLLDVTDFSLKI 144 (613)
Q Consensus 126 ~~f---~a~LL~lD~~d~~~~~ 144 (613)
+++ |.+.+.++..+|...+
T Consensus 136 ~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 136 NELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred HHHHHcCCeEEEEEHHHHHHHH
Confidence 986 7888999988877555
No 143
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.71 E-value=0.0002 Score=84.75 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=45.0
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS 591 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~ 591 (613)
++-|++++|+.|.+++...... .......++|+||||||||++|+++|..++.+|+..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 5789999999999887642211 111223589999999999999999999999999743
No 144
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.71 E-value=4.7e-05 Score=83.71 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=52.1
Q ss_pred cccccHHHHHHHHHHHHCcCCChhh----hhcCCCC-CCCceeeecCCCCCchhhhhhhHHhhCCceeeccC-----CCc
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDL----FKGGLLK-PCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPC-----LPS 596 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~----~~~~~i~-~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~-----~~~ 596 (613)
.|.|++++++.+...+....++-.. ....++. ....+||+||||||||++|+++|..++.||+..-. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3579999999988776321111110 0000111 13579999999999999999999999999973221 125
Q ss_pred chHH-HHHHHHHHH
Q 007208 597 LPNG-LVRMRRMFE 609 (613)
Q Consensus 597 lge~-e~~Ir~IF~ 609 (613)
+|.. +..+.++++
T Consensus 158 vG~d~e~~L~~~~~ 171 (413)
T TIGR00382 158 VGEDVENILLKLLQ 171 (413)
T ss_pred ccccHHHHHHHHHH
Confidence 6654 334444443
No 145
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=3.3e-05 Score=86.63 Aligned_cols=53 Identities=26% Similarity=0.351 Sum_probs=44.5
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+|+||.|.+++.+.|...+.. + +.+..+||+||||+|||++|+++|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 35699999999999999877654 2 44678999999999999999999997653
No 146
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=3.2e-05 Score=84.64 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=44.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+|++|.|.+.+++.|+..+.. + ..+..+||+||||||||++|+++|+.+.+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34689999999999998887753 2 34567999999999999999999999866
No 147
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.70 E-value=4.7e-05 Score=89.20 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=42.2
Q ss_pred cccccccccHHHHH---HHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 523 VTFADIGALEEIKE---SLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 523 v~~ddIgGl~~vk~---~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
-+++|+.|.+++.. .++..+.. .....+|||||||||||++|+++|+..+.+|+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~ 81 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFS 81 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcce
Confidence 45789999998875 45544432 12246899999999999999999999998887
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.70 E-value=5.9e-05 Score=90.16 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=55.7
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh----------CCceeecc--
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL----------GQASLMSP-- 592 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~----------g~~fi~~v-- 592 (613)
++++.|-++..+.+.+++.. .....++|+||||||||++|+++|..+ +.+++...
T Consensus 177 l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 56788888876666655433 233568999999999999999999997 66766321
Q ss_pred ----CCCcchHHHHHHHHHHHHhh
Q 007208 593 ----CLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 593 ----~~~~lge~e~~Ir~IF~~A~ 612 (613)
...+.|+.+++++++|+.++
T Consensus 244 ~l~ag~~~~g~~e~~lk~~~~~~~ 267 (857)
T PRK10865 244 ALVAGAKYRGEFEERLKGVLNDLA 267 (857)
T ss_pred hhhhccchhhhhHHHHHHHHHHHH
Confidence 12467888899999998753
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00042 Score=77.13 Aligned_cols=80 Identities=14% Similarity=0.312 Sum_probs=55.3
Q ss_pred CCEEEEEccchhhhhhh---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFKS---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl 338 (613)
++-||+|||++.+.... ..+++.|..+.+. +..+|+++... ..+...+++++..+|. ..++|++|+.+.|.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~--~k~IIlts~~~--p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE--GKLIVISSTCA--PQDLKAMEERLISRFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC--CCcEEEecCCC--HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHH
Confidence 56699999999853321 3466666655543 45566665321 1122357889999996 89999999999999
Q ss_pred HHHHHHHHH
Q 007208 339 VSWKSQLEE 347 (613)
Q Consensus 339 ~Ilk~~L~~ 347 (613)
.|++..++.
T Consensus 278 ~iL~~k~~~ 286 (445)
T PRK12422 278 SFLERKAEA 286 (445)
T ss_pred HHHHHHHHH
Confidence 999987644
No 150
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.69 E-value=4.1e-05 Score=76.58 Aligned_cols=45 Identities=42% Similarity=0.609 Sum_probs=35.9
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
|+||.|++..|+.+.-...- ..++||+|||||||||+|++++.-+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999988765542 2589999999999999999999654
No 151
>PRK06893 DNA replication initiation factor; Validated
Probab=97.67 E-value=0.00048 Score=69.79 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=48.5
Q ss_pred CCEEEEEccchhhhhhh---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhcc--CCceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFKS---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTAL--FPYNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~l--F~~~IeI~~P~ee~Rl 338 (613)
++-+|+|||++.+.... ..+++.+....+. ...++|++++.... ......+.+.++ +...++|++|+++.|.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~~p~--~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADCSPH--ALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCCChH--HccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 55799999999954322 1244444433321 23466777643211 111223556654 4578999999999999
Q ss_pred HHHHHHHH
Q 007208 339 VSWKSQLE 346 (613)
Q Consensus 339 ~Ilk~~L~ 346 (613)
+|++....
T Consensus 168 ~iL~~~a~ 175 (229)
T PRK06893 168 IVLQRNAY 175 (229)
T ss_pred HHHHHHHH
Confidence 99987653
No 152
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=3.7e-05 Score=90.71 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=45.0
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.+|++|.|.+++++.|+..+.. + +.+..+||+||||||||++|+++|+.++..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~-----------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 5699999999999999887754 1 345668999999999999999999998764
No 153
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=4e-05 Score=86.33 Aligned_cols=52 Identities=25% Similarity=0.331 Sum_probs=44.2
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
-+|+|+.|.+++.+.|...+.. + ..+..+||+||||||||++|+++|+.++.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4589999999999998876654 2 34568999999999999999999999875
No 154
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.66 E-value=0.00084 Score=67.76 Aligned_cols=79 Identities=20% Similarity=0.373 Sum_probs=46.7
Q ss_pred CCEEEEEccchhhhhhhh----HHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCc--eEEeCCCChHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQ----RTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPY--NIEIRPPEDENH 337 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~----r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~--~IeI~~P~ee~R 337 (613)
..=+|+|||++.+ .+.. .+++++..+.+. +..+|+.+.... .....+.+++..||.. .++|.+|+++.|
T Consensus 97 ~~DlL~iDDi~~l-~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P--~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 97 SADLLIIDDIQFL-AGKQRTQEELFHLFNRLIES--GKQLILTSDRPP--SELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp TSSEEEEETGGGG-TTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-T--TTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred cCCEEEEecchhh-cCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCC--ccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 5678999999995 4433 245544444433 445555553321 1123466777776554 899999999999
Q ss_pred HHHHHHHHHH
Q 007208 338 LVSWKSQLEE 347 (613)
Q Consensus 338 l~Ilk~~L~~ 347 (613)
.+|++....+
T Consensus 172 ~~il~~~a~~ 181 (219)
T PF00308_consen 172 RRILQKKAKE 181 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 155
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00041 Score=75.15 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=49.2
Q ss_pred CCEEEEEccchhhhhhhhH-HHHHHHHHHHhhc-CcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQR-TYNLFQKMMKKLL-ASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r-~~~~l~~~l~~l~-g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
.-.|||||+|.. |.++|+ + +|-.+. |.|++||+.| .|+.-.+..+|+.+- ...++.+-+.+.-...+
T Consensus 104 r~tiLflDEIHR-fnK~QQD~------lLp~vE~G~iilIGATT---ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l 172 (436)
T COG2256 104 RRTILFLDEIHR-FNKAQQDA------LLPHVENGTIILIGATT---ENPSFELNPALLSRA-RVFELKPLSSEDIKKLL 172 (436)
T ss_pred CceEEEEehhhh-cChhhhhh------hhhhhcCCeEEEEeccC---CCCCeeecHHHhhhh-heeeeecCCHHHHHHHH
Confidence 469999999999 555543 3 233333 5578888754 456678888887763 34567788888877777
Q ss_pred HHHH
Q 007208 342 KSQL 345 (613)
Q Consensus 342 k~~L 345 (613)
+.-+
T Consensus 173 ~ra~ 176 (436)
T COG2256 173 KRAL 176 (436)
T ss_pred HHHH
Confidence 7644
No 156
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.63 E-value=0.00028 Score=75.22 Aligned_cols=73 Identities=10% Similarity=0.206 Sum_probs=51.1
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHHHh------------hcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCC
Q 007208 266 IVVYLRDVDKLIFKSQRTYNLFQKMMKK------------LLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPE 333 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r~~~~l~~~l~~------------l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ 333 (613)
.|+|+|+|++ ...++.+.|..+|+. ++.+.+|+++++..-......+++++.++|-..+.++-|+
T Consensus 114 ~ill~DEInr---a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~ 190 (329)
T COG0714 114 VILLLDEINR---APPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPD 190 (329)
T ss_pred eEEEEecccc---CCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCC
Confidence 7999999999 345676777777765 3355677776442223355668999999999999999995
Q ss_pred hHHHHHHH
Q 007208 334 DENHLVSW 341 (613)
Q Consensus 334 ee~Rl~Il 341 (613)
.++-..++
T Consensus 191 ~~~e~~~i 198 (329)
T COG0714 191 SEEEERII 198 (329)
T ss_pred chHHHHHH
Confidence 54433333
No 157
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=6.5e-05 Score=85.75 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=45.4
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
|--|++++|++|.|++..... .+-...+=++|+||||.|||++|++||..+|..|+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence 667999999999999865111 122233447899999999999999999999999984
No 158
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.60 E-value=0.0015 Score=68.85 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=48.0
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCc-EEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLAS-VLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~-VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
.+-||+|||+|.+ .. .....|...++..+.. .+|+.++ .+..+...+.+++ ..+++.+|++++...+++
T Consensus 125 ~~~vlilDe~~~l-~~--~~~~~L~~~le~~~~~~~~Il~~~------~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~ 194 (337)
T PRK12402 125 DYKTILLDNAEAL-RE--DAQQALRRIMEQYSRTCRFIIATR------QPSKLIPPIRSRC-LPLFFRAPTDDELVDVLE 194 (337)
T ss_pred CCcEEEEeCcccC-CH--HHHHHHHHHHHhccCCCeEEEEeC------ChhhCchhhcCCc-eEEEecCCCHHHHHHHHH
Confidence 3469999999985 32 2334566777776654 3444432 1234455666665 579999999999888887
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 195 ~~~~ 198 (337)
T PRK12402 195 SIAE 198 (337)
T ss_pred HHHH
Confidence 6654
No 159
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=5e-05 Score=87.77 Aligned_cols=54 Identities=31% Similarity=0.360 Sum_probs=45.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
..+|+||.|.+++++.|...+.. + +.+.++||+||||||||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-----------~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-----------G-RLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 34599999999999999988764 1 446789999999999999999999997654
No 160
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.58 E-value=0.0012 Score=71.01 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=54.6
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-------------hcCcEEEEeeeeccCCCCccccchHhhccCCceEEeC
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-------------LLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIR 330 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-------------l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~ 330 (613)
.--||||||++.+ . .+..+.|...++. ++.+++++++.... ...+++++..+|...|.++
T Consensus 128 ~~GiL~lDEInrl-~--~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~----e~~l~~aLldRF~~~v~v~ 200 (334)
T PRK13407 128 NRGYLYIDEVNLL-E--DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPE----EGELRPQLLDRFGLSVEVR 200 (334)
T ss_pred CCCeEEecChHhC-C--HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcc----cCCCCHHHHhhcceEEEcC
Confidence 4468999999994 3 3444445555542 34567777764321 2358899999999999999
Q ss_pred CCCh-HHHHHHHHHHHH
Q 007208 331 PPED-ENHLVSWKSQLE 346 (613)
Q Consensus 331 ~P~e-e~Rl~Ilk~~L~ 346 (613)
+|.+ ++|.+|++....
T Consensus 201 ~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 201 SPRDVETRVEVIRRRDA 217 (334)
T ss_pred CCCcHHHHHHHHHHhhc
Confidence 9988 999999987643
No 161
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=6.3e-05 Score=86.10 Aligned_cols=52 Identities=29% Similarity=0.380 Sum_probs=44.4
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
-+|+||.|.+++++.|+..+.. + ..+..+||+||+|||||++|+++|+.+.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4599999999999999988764 2 34557899999999999999999998764
No 162
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0001 Score=77.52 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 73 SGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 73 se~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
-|..|.+|-=|+|-|-|.-.....-.+..=...-|||-||.+.+++.||+.||+-+.++|-+-|++.++
T Consensus 66 Qe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLT 134 (408)
T COG1219 66 QEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLT 134 (408)
T ss_pred chhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchh
Confidence 378899999999999765332222223444556699999999999999999999999999999999986
No 163
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.56 E-value=0.0017 Score=65.19 Aligned_cols=65 Identities=25% Similarity=0.131 Sum_probs=42.9
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhh---CCeEEEeec
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFF---EAKLLLLDV 137 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f---~a~LL~lD~ 137 (613)
-..|||+|.---.+.....|.+... . ....+.++|+||++.+++.||+|+|++. +..++.+|.
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-------------~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-------------G-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-------------c-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 3478999974434555554444332 0 1234569999999999999999999974 445555554
Q ss_pred cc
Q 007208 138 TD 139 (613)
Q Consensus 138 ~d 139 (613)
.+
T Consensus 79 ~~ 80 (227)
T PRK08903 79 AS 80 (227)
T ss_pred HH
Confidence 33
No 164
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=6.9e-05 Score=85.05 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=44.5
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+||.|.+++++.|...+.. + ..+..+||+||||||||++|+++|+.+++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-----------~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-----------Q-RLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4699999999999999888764 1 34567899999999999999999999875
No 165
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=9.7e-05 Score=84.45 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=43.4
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|++|.|.+.+++.+...+.. + ..+.++||+||||+|||++|+++|+.+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3488999999999999887643 2 34578999999999999999999998753
No 166
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.54 E-value=0.0011 Score=67.45 Aligned_cols=75 Identities=9% Similarity=0.204 Sum_probs=47.6
Q ss_pred EEEEEccchhhhhhhhH----HHHHHHHHHHhhcCc-EEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHH
Q 007208 266 IVVYLRDVDKLIFKSQR----TYNLFQKMMKKLLAS-VLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHL 338 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r----~~~~l~~~l~~l~g~-VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl 338 (613)
-+|+|||++.+ .+.++ +++.+....+ .+. -+|+.++.. ......+.+++..||. -.++|++|+++.|.
T Consensus 99 dlliiDdi~~~-~~~~~~~~~lf~l~n~~~e--~g~~~li~ts~~~--p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 99 SLVCIDNIECI-AGDELWEMAIFDLYNRILE--SGRTRLLITGDRP--PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKL 173 (235)
T ss_pred CEEEEeChhhh-cCCHHHHHHHHHHHHHHHH--cCCCeEEEeCCCC--hHHcCcccHHHHHHHhCCceeeecCCCHHHHH
Confidence 47999999994 44333 3444444443 243 244443211 1112335688888886 89999999999999
Q ss_pred HHHHHHH
Q 007208 339 VSWKSQL 345 (613)
Q Consensus 339 ~Ilk~~L 345 (613)
+++++..
T Consensus 174 ~~l~~~a 180 (235)
T PRK08084 174 QALQLRA 180 (235)
T ss_pred HHHHHHH
Confidence 9987643
No 167
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.54 E-value=8.6e-05 Score=79.09 Aligned_cols=52 Identities=29% Similarity=0.382 Sum_probs=43.7
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|++|.|.+++++.+.+.+.. + ..+..+|||||||+|||++|+++|+.+..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5699999999999999887754 1 23467899999999999999999998753
No 168
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.54 E-value=0.0012 Score=70.53 Aligned_cols=78 Identities=9% Similarity=0.186 Sum_probs=54.8
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-----hc--------C-cEEEEeee-eccCC------CCccccchHhhcc
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-----LL--------A-SVLILGSR-IVDLS------NDQREVDGRVTAL 322 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-----l~--------g-~VlIiGS~-~~ds~------~~~~~v~~~l~~l 322 (613)
.+.||++||+|.. +.+....|+.+|+. +. . ...+++++ +.+.. .....++++...|
T Consensus 134 ~g~illlDEin~a---~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDR 210 (327)
T TIGR01650 134 HNVALCFDEYDAG---RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDR 210 (327)
T ss_pred CCeEEEechhhcc---CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhh
Confidence 6899999999983 45666677777773 11 1 34445543 33322 2224468999999
Q ss_pred CCceEEeCCCChHHHHHHHHHH
Q 007208 323 FPYNIEIRPPEDENHLVSWKSQ 344 (613)
Q Consensus 323 F~~~IeI~~P~ee~Rl~Ilk~~ 344 (613)
|-..+.+.-|+.+...+|++..
T Consensus 211 F~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 211 WSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred eeeEeeCCCCCHHHHHHHHHhh
Confidence 9999999999999999998754
No 169
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00016 Score=83.46 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=44.1
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|++|.|.+++++.|...+.. + +....+||+||||+|||++|+++|+.+.+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4589999999999999888765 1 12347999999999999999999999876
No 170
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=7.1e-05 Score=85.90 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=45.0
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+||.|.+++++.|...+.. + +.+..+||+||+|||||++|+++|+.+++
T Consensus 13 qtFddVIGQe~vv~~L~~al~~-----------g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-----------Q-RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4589999999999999988764 1 34567899999999999999999999876
No 171
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=8.2e-05 Score=84.52 Aligned_cols=52 Identities=27% Similarity=0.326 Sum_probs=43.8
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+||.|.+++++.|...+.. + ..+..+||+||||||||++|+++|+.+..
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4589999999999998887754 1 34567899999999999999999998764
No 172
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0028 Score=71.64 Aligned_cols=74 Identities=8% Similarity=0.159 Sum_probs=53.7
Q ss_pred CEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHH
Q 007208 265 PIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQ 344 (613)
Q Consensus 265 P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~ 344 (613)
.-|++|||++.+ . ......|.+.|+.-+..+++|.. +++..++...+.++. ..+++.+++.++....++..
T Consensus 129 ~KVvIIDEa~~L-s--~~a~naLLk~LEepp~~~vfI~a-----Tte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 129 HKIFIIDEVHML-S--KGAFNALLKTLEEPPPHIIFIFA-----TTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred cEEEEEEChhhc-C--HHHHHHHHHHHhhcCCCEEEEEE-----eCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHH
Confidence 459999999985 3 23445566777777777654443 123466888888777 57999999999999999888
Q ss_pred HHH
Q 007208 345 LEE 347 (613)
Q Consensus 345 L~~ 347 (613)
++.
T Consensus 200 ~~~ 202 (507)
T PRK06645 200 TKQ 202 (507)
T ss_pred HHH
Confidence 764
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=9.4e-05 Score=65.41 Aligned_cols=28 Identities=43% Similarity=0.765 Sum_probs=25.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
...++|+||||||||++++++|..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3568999999999999999999999876
No 174
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.52 E-value=0.00013 Score=84.02 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=58.2
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCce-e--eccCCC---
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQAS-L--MSPCLP--- 595 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~f-i--~~v~~~--- 595 (613)
..-|+++.|.+++++.++..+.. .+.++|+||||||||++|+++|..++... + .....+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~ 78 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDP 78 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCC
Confidence 45689999999999988877753 13799999999999999999999997652 1 011111
Q ss_pred --------cchHHHHHHHHHHHHhhC
Q 007208 596 --------SLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 596 --------~lge~e~~Ir~IF~~A~r 613 (613)
..+.+++.++..|..|++
T Consensus 79 ~~~~~~~v~~~~g~~~~~~~~~~~~~ 104 (608)
T TIGR00764 79 NMPRIVEVPAGEGREIVEDYKKKAFK 104 (608)
T ss_pred chHHHHHHHHhhchHHHHHHHHHhhc
Confidence 235667899999998864
No 175
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=9.1e-05 Score=85.35 Aligned_cols=53 Identities=28% Similarity=0.399 Sum_probs=45.1
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..+|++|.|.+.+++.|+..+.. + ..+.++||+||||||||++|+++|+.+.+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35699999999999998887654 2 44567999999999999999999999876
No 176
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=9.8e-05 Score=84.38 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=44.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+|+||.|.+++.+.|+..+.. + ..+..+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-----------G-KISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35699999999999999988764 1 34567999999999999999999999764
No 177
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=8.3e-05 Score=86.46 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=44.4
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
-+|+||.|.+++++.|...+.. + ..+..+||+||+|||||++|+++|+.+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4589999999999999988754 1 34567899999999999999999999875
No 178
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.00015 Score=64.94 Aligned_cols=31 Identities=42% Similarity=0.867 Sum_probs=27.4
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
..+.++++||||||||++++.++..+ +.+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~ 51 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFL 51 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE
Confidence 34679999999999999999999998 77776
No 179
>PLN03025 replication factor C subunit; Provisional
Probab=97.49 E-value=0.0014 Score=69.64 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=49.7
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
.+-||+|||+|.+-..++ +.|...++..+..+ +|+.++ ....+.+.|.++. ..+++++|++++....++
T Consensus 99 ~~kviiiDE~d~lt~~aq---~aL~~~lE~~~~~t~~il~~n------~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~ 168 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQ---QALRRTMEIYSNTTRFALACN------TSSKIIEPIQSRC-AIVRFSRLSDQEILGRLM 168 (319)
T ss_pred CeEEEEEechhhcCHHHH---HHHHHHHhcccCCceEEEEeC------CccccchhHHHhh-hcccCCCCCHHHHHHHHH
Confidence 468999999999644333 33566677766554 444332 2345666777765 479999999999888887
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 169 ~i~~ 172 (319)
T PLN03025 169 KVVE 172 (319)
T ss_pred HHHH
Confidence 6654
No 180
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00011 Score=81.87 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=44.2
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+||.|.+++++.|...+.. + ..+..+|||||||+|||++|+++|+.+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5699999999999999888764 1 34567999999999999999999998754
No 181
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=9.7e-05 Score=86.00 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=45.0
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+|++|.|.+.+++.|+..+.. + ..+..+|||||||||||++|+++|+.+.+
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-----------~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-----------N-KISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 35699999999999999988864 1 34567999999999999999999998765
No 182
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.47 E-value=0.00021 Score=85.46 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=54.9
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC----------Cceeec--
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG----------QASLMS-- 591 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g----------~~fi~~-- 591 (613)
.++++.|.++..+.+.+.+.. ....+++|+||||||||++|+.+|.... ..++..
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 367888988876666554432 2234789999999999999999999862 234311
Q ss_pred ---c-CCCcchHHHHHHHHHHHHhh
Q 007208 592 ---P-CLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 592 ---v-~~~~lge~e~~Ir~IF~~A~ 612 (613)
. ...+.|+-+.+++++|+.++
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~ 276 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVK 276 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHH
Confidence 1 12477888999999999874
No 183
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.47 E-value=0.00014 Score=72.34 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=36.6
Q ss_pred cccccc--cccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 523 VTFADI--GALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 523 v~~ddI--gGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+|++. ++.....+.+++++.. .....++|+||||||||++|++++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 445555 3456667777765431 3356799999999999999999998863
No 184
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.46 E-value=0.0011 Score=78.05 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=50.3
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
...||||||+|.|-...+. .|...++. +.+++||+.+. +....++..+.++. ..+++++++.+++..+|+.
T Consensus 109 ~~~IL~IDEIh~Ln~~qQd---aLL~~lE~--g~IiLI~aTTe---np~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQD---ALLPWVEN--GTITLIGATTE---NPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred CceEEEEeChhhCCHHHHH---HHHHHhcC--ceEEEEEecCC---ChHhhhhhHhhccc-cceecCCCCHHHHHHHHHH
Confidence 5789999999995332222 22233332 55677775432 33345677777664 4699999999999999998
Q ss_pred HHHH
Q 007208 344 QLEE 347 (613)
Q Consensus 344 ~L~~ 347 (613)
.+.+
T Consensus 180 ~l~~ 183 (725)
T PRK13341 180 ALQD 183 (725)
T ss_pred HHHH
Confidence 8763
No 185
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.00011 Score=84.20 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=45.2
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..+|+||.|.+++++.|...+.. + ..+..+|||||||||||++|+++|+.+..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 35699999999999999988764 2 34567899999999999999999999764
No 186
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=9.5e-05 Score=85.37 Aligned_cols=53 Identities=28% Similarity=0.349 Sum_probs=45.0
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.+|+||.|.+++++.|...+.. + ..+..+||+||||||||++|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4599999999999999887764 2 345678999999999999999999998763
No 187
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.00011 Score=84.68 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=44.3
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
-+|+||.|.+++.+.|...+.. + ..+..+||+||+|||||++|+++|+.+++
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-----------~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4589999999999999988764 1 34567899999999999999999999865
No 188
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.45 E-value=0.0022 Score=68.40 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=51.1
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..-||+|||+|.+- ......|.+.++..+..+ +|+.+ ++...+...+.+++ ..+++++|++++..++++
T Consensus 117 ~~~vviidea~~l~---~~~~~~Ll~~le~~~~~~~lIl~~------~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~ 186 (355)
T TIGR02397 117 KYKVYIIDEVHMLS---KSAFNALLKTLEEPPEHVVFILAT------TEPHKIPATILSRC-QRFDFKRIPLEDIVERLK 186 (355)
T ss_pred CceEEEEeChhhcC---HHHHHHHHHHHhCCccceeEEEEe------CCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHH
Confidence 34599999999952 233445566667766665 44443 23456667788887 478999999999988888
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..+.+
T Consensus 187 ~~~~~ 191 (355)
T TIGR02397 187 KILDK 191 (355)
T ss_pred HHHHH
Confidence 76643
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.44 E-value=0.00022 Score=85.40 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=54.9
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh----------CCceeec---
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL----------GQASLMS--- 591 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~----------g~~fi~~--- 591 (613)
++.+.|.++..+.+.+++.. .....++|+||||||||++|+++|... +.+++..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~ 238 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG 238 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH
Confidence 56788888876666655432 234568999999999999999999986 5555521
Q ss_pred --c-CCCcchHHHHHHHHHHHHhh
Q 007208 592 --P-CLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 592 --v-~~~~lge~e~~Ir~IF~~A~ 612 (613)
+ ...+.|+.+++++++|+.+.
T Consensus 239 ~l~a~~~~~g~~e~~l~~~l~~~~ 262 (852)
T TIGR03346 239 ALIAGAKYRGEFEERLKAVLNEVT 262 (852)
T ss_pred HHhhcchhhhhHHHHHHHHHHHHH
Confidence 1 13577888889999998764
No 190
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.43 E-value=7.8e-05 Score=68.83 Aligned_cols=30 Identities=40% Similarity=0.691 Sum_probs=27.5
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCceeec
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASLMS 591 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi~~ 591 (613)
+|||+||||||||.+|+.+|..++.+++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i 30 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRI 30 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence 489999999999999999999999999743
No 191
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.43 E-value=0.0018 Score=57.95 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=33.2
Q ss_pred CCCceEeecchhHHHHHHHHHHHhhh---CCeEEEeecccch
Q 007208 103 ASQAILLSGPAELYQQMLAKALAHFF---EAKLLLLDVTDFS 141 (613)
Q Consensus 103 ~~~~ILLsGP~e~yqe~LaKALA~~f---~a~LL~lD~~d~~ 141 (613)
..+.|++.||+++++++|++++++++ +.+++.++...+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 44579999999999999999999998 8888888776653
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.42 E-value=0.0002 Score=74.12 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=29.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCceeeccCC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL 594 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~ 594 (613)
+.+||.||||||||++|+++|..+|.+|+...+.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 5699999999999999999999999999844333
No 193
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0026 Score=69.81 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=56.1
Q ss_pred HHHHHHHHHhh-hcCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceE
Q 007208 250 IQSIYRVLCYV-SKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNI 327 (613)
Q Consensus 250 lqaL~evl~s~-s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~I 327 (613)
++.|++.+... .....-|++|||+|.+-. ...+.|.+.|+.-+.++ +|++++ .+..+...|.++. ..|
T Consensus 102 iR~l~~~~~~~p~~~~~kViiIDead~m~~---~aanaLLk~LEep~~~~~fIL~a~------~~~~llpTIrSRc-~~i 171 (394)
T PRK07940 102 VRELVTIAARRPSTGRWRIVVIEDADRLTE---RAANALLKAVEEPPPRTVWLLCAP------SPEDVLPTIRSRC-RHV 171 (394)
T ss_pred HHHHHHHHHhCcccCCcEEEEEechhhcCH---HHHHHHHHHhhcCCCCCeEEEEEC------ChHHChHHHHhhC-eEE
Confidence 44555544322 123456999999999622 33455777788876554 666642 2567778888887 599
Q ss_pred EeCCCChHHHHHHHH
Q 007208 328 EIRPPEDENHLVSWK 342 (613)
Q Consensus 328 eI~~P~ee~Rl~Ilk 342 (613)
.+++|+.++..+.|.
T Consensus 172 ~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 172 ALRTPSVEAVAEVLV 186 (394)
T ss_pred ECCCCCHHHHHHHHH
Confidence 999999998776665
No 194
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0027 Score=68.85 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
..-|++|||+|.+ .. ...+.|.+.++.-++.+.+|.. +++...+.+.+..++ ..+++++|+.++..+.++.
T Consensus 119 ~~kviIIDEa~~l-~~--~a~naLLk~lEe~~~~~~fIl~-----t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 119 RFKVYLIDEVHML-SR--HSFNALLKTLEEPPQHIKFILA-----TTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKY 189 (363)
T ss_pred CceEEEEEChhhc-CH--HHHHHHHHHHhcCCCCeEEEEE-----cCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 3469999999995 32 2334466667777777643332 123456777888777 5799999999999888877
Q ss_pred HHHH
Q 007208 344 QLEE 347 (613)
Q Consensus 344 ~L~~ 347 (613)
.++.
T Consensus 190 ~~~~ 193 (363)
T PRK14961 190 ILIK 193 (363)
T ss_pred HHHH
Confidence 6543
No 195
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.42 E-value=0.00014 Score=76.00 Aligned_cols=49 Identities=35% Similarity=0.427 Sum_probs=40.8
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+|+|+.|.+++++.+...+.. +.. ..+||+||||||||++|+++++++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~-----------~~~--~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE-----------KNM--PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC-----------CCC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999887753 111 248999999999999999999986
No 196
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.00013 Score=83.75 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=45.3
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.+|+||.|.+.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3589999999999999887754 2 346789999999999999999999998754
No 197
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.00014 Score=83.02 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=44.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+|+||.|.+++++.|+..+.. + ..+..+|||||||+|||++|+++|+.+..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 35699999999999999888764 1 34567999999999999999999999865
No 198
>PRK12377 putative replication protein; Provisional
Probab=97.39 E-value=0.00019 Score=74.01 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=43.4
Q ss_pred HHhhhcCCCccCCCCccccccccc----cHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHH
Q 007208 507 FEKRIRPEVIPSNEISVTFADIGA----LEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 507 ~e~~~~~~ii~~~~~~v~~ddIgG----l~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
.+..+...-|++...+.+|+.... ...+......++. .|.. ...+++|+||||||||+||.|||+
T Consensus 55 ~~~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~-------~~~~----~~~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 55 VEKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIAD-------ELMT----GCTNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred HHHHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHH-------HHHh----cCCeEEEECCCCCCHHHHHHHHHH
Confidence 334445555666666778887742 2223333333322 2221 236899999999999999999999
Q ss_pred hhC
Q 007208 583 RLG 585 (613)
Q Consensus 583 e~g 585 (613)
++.
T Consensus 124 ~l~ 126 (248)
T PRK12377 124 RLL 126 (248)
T ss_pred HHH
Confidence 873
No 199
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0039 Score=73.17 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=129.4
Q ss_pred cccccccCCCCCC----CCCCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHH---HhhcCCCccccccc
Q 007208 26 GQTMSKWAGNNPS----PNAVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAA---YVHLKHTEVSKYTR 98 (613)
Q Consensus 26 ~~~~~~~~~~~~~----~~~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a---~~hL~~~~~~k~~~ 98 (613)
+..+++|+|-.-+ +..-..-.+|++|+++|+=- ++....+..+. .+.|+.|.
T Consensus 460 a~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQ---------------d~AV~avs~aIrraRaGL~dp~------ 518 (786)
T COG0542 460 AEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQ---------------DEAVEAVSDAIRRARAGLGDPN------ 518 (786)
T ss_pred HHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeCh---------------HHHHHHHHHHHHHHhcCCCCCC------
Confidence 3567889886644 23334446788888888744 34444443332 22333322
Q ss_pred CCCCCCCceEeecchhHHHHHHHHHHHhhhC---CeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCc
Q 007208 99 NLSPASQAILLSGPAELYQQMLAKALAHFFE---AKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGS 175 (613)
Q Consensus 99 ~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~---a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~ 175 (613)
.+-+-.|+.||.+.+++-||||||.++. -.|+-+|.+.|..+- -||.++|+
T Consensus 519 ---rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH-----------------------sVSrLIGa 572 (786)
T COG0542 519 ---RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH-----------------------SVSRLIGA 572 (786)
T ss_pred ---CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH-----------------------HHHHHhCC
Confidence 2223456679999999999999999998 899999999997443 14455663
Q ss_pred ccccccccccccccccCCCCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHH
Q 007208 176 FSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYR 255 (613)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~e 255 (613)
- ||- -|++ -| -
T Consensus 573 P---------PGY-----VGye---------------------------eG----------------------------G 583 (786)
T COG0542 573 P---------PGY-----VGYE---------------------------EG----------------------------G 583 (786)
T ss_pred C---------CCC-----ceec---------------------------cc----------------------------c
Confidence 2 000 0000 00 0
Q ss_pred HHHhhhcCCC-EEEEEccchhhhhhhhHHHHHHHHHHHh--h----------cCcEEEEeeeec-----c-CCCC----c
Q 007208 256 VLCYVSKTSP-IVVYLRDVDKLIFKSQRTYNLFQKMMKK--L----------LASVLILGSRIV-----D-LSND----Q 312 (613)
Q Consensus 256 vl~s~s~~~P-~IL~idDiD~~l~~s~r~~~~l~~~l~~--l----------~g~VlIiGS~~~-----d-s~~~----~ 312 (613)
.+-++-+..| +||+||+||+ .-.++++.|...||. + ...|+|+.|+.- . ...+ .
T Consensus 584 ~LTEaVRr~PySViLlDEIEK---AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~ 660 (786)
T COG0542 584 QLTEAVRRKPYSVILLDEIEK---AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADK 660 (786)
T ss_pred chhHhhhcCCCeEEEechhhh---cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchh
Confidence 2233445565 8999999999 346788888888884 2 234677777652 1 1100 0
Q ss_pred ----ccc--------chHhhccCCceEEeCCCChHHHHHHHHHHHHHHH
Q 007208 313 ----REV--------DGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDM 349 (613)
Q Consensus 313 ----~~v--------~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~ 349 (613)
..+ ...+..|++..|...+-+.+.-.+|...+|.+=.
T Consensus 661 ~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~ 709 (786)
T COG0542 661 EALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLA 709 (786)
T ss_pred hhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHH
Confidence 112 3345567888999999999999999999886633
No 200
>PRK06620 hypothetical protein; Validated
Probab=97.38 E-value=0.00018 Score=72.37 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=26.3
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.++||||||||||+|++++++..+..++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~ 73 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII 73 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc
Confidence 67999999999999999999999887665
No 201
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.00015 Score=86.14 Aligned_cols=53 Identities=28% Similarity=0.360 Sum_probs=44.7
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..+|++|.|.+++++.|+..+.. + +.+..+||+||+|||||++|+++|+.+.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 35699999999999999888754 1 34467899999999999999999999865
No 202
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.00017 Score=82.95 Aligned_cols=52 Identities=27% Similarity=0.407 Sum_probs=43.5
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+||.|.+++++.|+..+.. + ..+..+|||||||+|||++|+++|+.+++
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4589999999999999887764 1 23456899999999999999999998764
No 203
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.36 E-value=0.0001 Score=66.13 Aligned_cols=27 Identities=41% Similarity=0.799 Sum_probs=25.6
Q ss_pred eeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
|++.||||+|||++|+.+|..+|++++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVI 28 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 689999999999999999999999986
No 204
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.35 E-value=0.00021 Score=73.25 Aligned_cols=59 Identities=29% Similarity=0.465 Sum_probs=48.4
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
.+.++++.|++.+++.|.+-... |-.. .|...+||+|++|||||++++|+..+. |+.+|
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlI 84 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLI 84 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEE
Confidence 57899999999999999876644 5432 467889999999999999999999876 44554
No 205
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0052 Score=71.07 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=52.9
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-|++||++|.+ .. ...+.|.+.|+.-++.+.+|.. +++...+...+.++. ..+++.+++.++-...++
T Consensus 117 gk~KV~IIDEVh~L-S~--~A~NALLKtLEEPP~~v~FILa-----Ttd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~ 187 (702)
T PRK14960 117 GRFKVYLIDEVHML-ST--HSFNALLKTLEEPPEHVKFLFA-----TTDPQKLPITVISRC-LQFTLRPLAVDEITKHLG 187 (702)
T ss_pred CCcEEEEEechHhc-CH--HHHHHHHHHHhcCCCCcEEEEE-----ECChHhhhHHHHHhh-heeeccCCCHHHHHHHHH
Confidence 34579999999985 32 3445677788887777644443 223455666666666 688999999988888777
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..+..
T Consensus 188 ~Il~k 192 (702)
T PRK14960 188 AILEK 192 (702)
T ss_pred HHHHH
Confidence 76654
No 206
>PHA02244 ATPase-like protein
Probab=97.34 E-value=0.00022 Score=77.22 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=28.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
...|||+||||||||++|+++|..++.||+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~ 149 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYF 149 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3469999999999999999999999999983
No 207
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.34 E-value=0.00028 Score=70.86 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=36.2
Q ss_pred cccccccc--ccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIG--ALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIg--Gl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+|+++. +-..+...+++++. +......++|+||||||||++|++++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46788743 33455555555433 12345679999999999999999999986
No 208
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00017 Score=79.69 Aligned_cols=46 Identities=33% Similarity=0.525 Sum_probs=38.3
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHH
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
...|.||.|++..|+.+.....- ..++||+|||||||||+|+.+..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcc
Confidence 34789999999999998765532 35799999999999999997764
No 209
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.30 E-value=0.00031 Score=71.52 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=34.7
Q ss_pred cccccccc--ccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 522 SVTFADIG--ALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 522 ~v~~ddIg--Gl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+.+|++.. +...+...++..... .....++||||||||||+|++++|+++.
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677664 334455555544322 1224689999999999999999998865
No 210
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.30 E-value=0.00022 Score=76.47 Aligned_cols=50 Identities=30% Similarity=0.420 Sum_probs=40.0
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...|++|.|.+++++.+.-.... .-..++||+||||||||++|+++|.-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 35699999999999877644322 112469999999999999999999887
No 211
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.29 E-value=0.01 Score=70.42 Aligned_cols=94 Identities=15% Similarity=0.278 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhH-HHHHHHHHHHhhcCcEEEEeeee-ccCCCCccccchHhhccCCc-
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQR-TYNLFQKMMKKLLASVLILGSRI-VDLSNDQREVDGRVTALFPY- 325 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r-~~~~l~~~l~~l~g~VlIiGS~~-~ds~~~~~~v~~~l~~lF~~- 325 (613)
.++.+|+.+.+ ....+.||+|||||.|....++ +|.+|.-.. .-.+.|+|||... .+ -+..++.++..+|..
T Consensus 855 vLerLF~~L~k-~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~SKLiLIGISNdlD---LperLdPRLRSRLg~e 929 (1164)
T PTZ00112 855 ILDRLFNQNKK-DNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KINSKLVLIAISNTMD---LPERLIPRCRSRLAFG 929 (1164)
T ss_pred HHHHHHhhhhc-ccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccCCeEEEEEecCchh---cchhhhhhhhhccccc
Confidence 45555554322 2345789999999998765544 555555322 2345677888532 22 223455677666654
Q ss_pred eEEeCCCChHHHHHHHHHHHHH
Q 007208 326 NIEIRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 326 ~IeI~~P~ee~Rl~Ilk~~L~~ 347 (613)
+|.++|++.+++.+|++..++.
T Consensus 930 eIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 930 RLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred cccCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999987753
No 212
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00023 Score=80.00 Aligned_cols=52 Identities=27% Similarity=0.343 Sum_probs=43.7
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|++|.|.+++.+.|+..+.. + ..+..+|||||||+|||++|+++|..++.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4589999999999999888754 1 33456899999999999999999998763
No 213
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00023 Score=81.76 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=44.4
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..+|+||.|.+++++.|...+.. + +.+..+||+||||||||++|+++|+.+..
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 34589999999999999988754 1 22357999999999999999999999875
No 214
>PRK06893 DNA replication initiation factor; Validated
Probab=97.28 E-value=0.00026 Score=71.70 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.4
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++||||||||||+|++|+|+++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999986
No 215
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.28 E-value=0.0019 Score=72.02 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=53.6
Q ss_pred CCEEEEEccchhhhhhh---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccC--CceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFKS---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALF--PYNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF--~~~IeI~~P~ee~Rl 338 (613)
.+-+|+|||++.+-... ..++++|..+.+. +..+|+.++... .....+++++..+| .-.++|++|+.+.|.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~--~k~iIltsd~~P--~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN--DKQLFFSSDKSP--ELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCcEEEECCCCH--HHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 55689999999853221 2356655555543 334566653321 12234678888887 478899999999999
Q ss_pred HHHHHHHHH
Q 007208 339 VSWKSQLEE 347 (613)
Q Consensus 339 ~Ilk~~L~~ 347 (613)
+|++..++.
T Consensus 282 ~iL~~~~~~ 290 (450)
T PRK14087 282 AIIKKEIKN 290 (450)
T ss_pred HHHHHHHHh
Confidence 999988754
No 216
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.27 E-value=0.0027 Score=64.55 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=40.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 64 TFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 64 sf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
+|++|=+- ++.+..|.-..-+-.+.. ..-.++||+||+++++++||+-+|+++++.+-.+.+
T Consensus 22 ~L~efiGQ--~~l~~~l~i~i~aa~~r~----------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 22 SLDEFIGQ--EHLKGNLKILIRAAKKRG----------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp SCCCS-S---HHHHHHHHHHHHHHHCTT----------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred CHHHccCc--HHHHhhhHHHHHHHHhcC----------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 78999888 777776543322212111 223469999999999999999999999999876544
No 217
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0003 Score=74.67 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=56.7
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCC-CCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC-----cchH-
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGL-LKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP-----SLPN- 599 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~-i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~-----~lge- 599 (613)
.|.|+++.|+.+.-.+....++-.+-..+- --.|+.||+.||.|.|||-+||.+|+-.++||+..-... |+|.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrD 95 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRD 95 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccccccc
Confidence 578999999887665544332222222111 124789999999999999999999999999999443333 4442
Q ss_pred HHHHHHHHHHHh
Q 007208 600 GLVRMRRMFELY 611 (613)
Q Consensus 600 ~e~~Ir~IF~~A 611 (613)
-+.-||++-+-|
T Consensus 96 VesivRDLve~a 107 (444)
T COG1220 96 VESIIRDLVEIA 107 (444)
T ss_pred HHHHHHHHHHHH
Confidence 245666665543
No 218
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.013 Score=68.63 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
.--|++|||+|.+ . ....+.|.+.|+.-+..+.+|-. +++..++...|..|+ ..+.+..+..++-.+.|+.
T Consensus 119 r~KVIIIDEah~L-T--~~A~NALLKtLEEPP~~v~FILa-----Ttd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~ 189 (830)
T PRK07003 119 RFKVYMIDEVHML-T--NHAFNAMLKTLEEPPPHVKFILA-----TTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLER 189 (830)
T ss_pred CceEEEEeChhhC-C--HHHHHHHHHHHHhcCCCeEEEEE-----ECChhhccchhhhhe-EEEecCCcCHHHHHHHHHH
Confidence 4579999999995 3 23455566778888777644443 234567777777776 6888899999888888887
Q ss_pred HHHH
Q 007208 344 QLEE 347 (613)
Q Consensus 344 ~L~~ 347 (613)
.++.
T Consensus 190 Il~~ 193 (830)
T PRK07003 190 ILGE 193 (830)
T ss_pred HHHH
Confidence 6643
No 219
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.23 E-value=0.00031 Score=73.27 Aligned_cols=56 Identities=30% Similarity=0.418 Sum_probs=38.2
Q ss_pred ccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC--Ccee
Q 007208 526 ADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG--QASL 589 (613)
Q Consensus 526 ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g--~~fi 589 (613)
+.+.|+.+.++..--.+.+ .+.. .-..+++||.||||||||.+|-||++|+| +||.
T Consensus 38 ~g~vGQ~~AReAagiivdl-------ik~K-kmaGravLlaGppgtGKTAlAlaisqELG~kvPFc 95 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDL-------IKSK-KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFC 95 (456)
T ss_pred cccccchhhhhhhhHHHHH-------HHhh-hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcc
Confidence 3556777766554333322 1111 11247899999999999999999999986 6776
No 220
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.00032 Score=79.54 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=43.5
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+|++|.|.+++++.|...+.. + ..+..+|||||||+|||++|+++|+.+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 4599999999999999888754 2 3456789999999999999999999874
No 221
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.22 E-value=0.00031 Score=79.83 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=39.5
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..+|++|.|.++..+.++..+.. ..+..+||+||||||||++|++++.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 36799999999998888765322 12457999999999999999999865
No 222
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0057 Score=72.93 Aligned_cols=76 Identities=8% Similarity=0.071 Sum_probs=53.6
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..--|++||++|.+ . ....+.|.+.|++.+..+++|-. +++.+++-..|.++. ..+++.++..++-...++
T Consensus 119 ~~~KV~IIDEad~l-t--~~a~NaLLK~LEEpP~~~~fIl~-----tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~ 189 (824)
T PRK07764 119 SRYKIFIIDEAHMV-T--PQGFNALLKIVEEPPEHLKFIFA-----TTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLE 189 (824)
T ss_pred CCceEEEEechhhc-C--HHHHHHHHHHHhCCCCCeEEEEE-----eCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHH
Confidence 34569999999996 3 34566788899998888755543 223345666676664 578888898888877777
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..+..
T Consensus 190 ~il~~ 194 (824)
T PRK07764 190 RICAQ 194 (824)
T ss_pred HHHHH
Confidence 76643
No 223
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0056 Score=69.32 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=52.1
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..+-||+|||+|.+ . ......|.+.++.-+..+++|.. ++...++...+.+++. .+++.+|++++-...++
T Consensus 115 ~~~kVVIIDEad~l-s--~~a~naLLk~LEep~~~t~~Il~-----t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~ 185 (504)
T PRK14963 115 GGRKVYILDEAHMM-S--KSAFNALLKTLEEPPEHVIFILA-----TTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLR 185 (504)
T ss_pred CCCeEEEEECcccc-C--HHHHHHHHHHHHhCCCCEEEEEE-----cCChhhCChHHhcceE-EEEecCCCHHHHHHHHH
Confidence 46679999999985 2 23444566667776665533332 2234567777777765 79999999999888888
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..++.
T Consensus 186 ~i~~~ 190 (504)
T PRK14963 186 RLLEA 190 (504)
T ss_pred HHHHH
Confidence 77654
No 224
>PRK05642 DNA replication initiation factor; Validated
Probab=97.19 E-value=0.006 Score=62.09 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=47.6
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHHHhh--cCcEEEEeeeeccCCCCccccchHhhccC--CceEEeCCCChHHHHHHHH
Q 007208 267 VVYLRDVDKLIFKSQRTYNLFQKMMKKL--LASVLILGSRIVDLSNDQREVDGRVTALF--PYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 267 IL~idDiD~~l~~s~r~~~~l~~~l~~l--~g~VlIiGS~~~ds~~~~~~v~~~l~~lF--~~~IeI~~P~ee~Rl~Ilk 342 (613)
+|+|||++.+. +..+.-..|-..++.+ .+..+|++++.... .......++..|| ...++|++|+++.|+.+++
T Consensus 100 ~LiiDDi~~~~-~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~--~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 100 LVCLDDLDVIA-GKADWEEALFHLFNRLRDSGRRLLLAASKSPR--ELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred EEEEechhhhc-CChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH--HcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 78899999843 3222222233344433 25677888754321 1222356777777 4778899999999999998
Q ss_pred HHH
Q 007208 343 SQL 345 (613)
Q Consensus 343 ~~L 345 (613)
...
T Consensus 177 ~ka 179 (234)
T PRK05642 177 LRA 179 (234)
T ss_pred HHH
Confidence 654
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.00041 Score=71.37 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=43.3
Q ss_pred HHhhhcCCCccCCCCcccccccccc-HHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 507 FEKRIRPEVIPSNEISVTFADIGAL-EEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 507 ~e~~~~~~ii~~~~~~v~~ddIgGl-~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..+....|++...+.+|++.... +.++..+..+..+ .+-|.. ...+++|+||||||||+||.|||.++
T Consensus 53 ~~~~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~----~~~~~~----~~~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 53 MQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQY----VEEFDG----NIASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred HHHHHHHcCCCccccCCccccccCCCchHHHHHHHHHHH----HHhhcc----CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444455556655567889887532 2333333332222 122221 13589999999999999999999997
No 226
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.17 E-value=0.00019 Score=76.57 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=29.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCceeec
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASLMS 591 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~ 591 (613)
.+.|||.||||||||++|+.+|..++.|++..
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999999999843
No 227
>PRK08116 hypothetical protein; Validated
Probab=97.16 E-value=0.00029 Score=73.34 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=45.9
Q ss_pred hHHhhhcCCCccCCCCccccccccccHHHH---HHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHH
Q 007208 506 EFEKRIRPEVIPSNEISVTFADIGALEEIK---ESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 506 e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk---~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
..+.......+++.-.+.+|++...-+... ...++++ +.|.... ....|++|+||||||||+||.|||+
T Consensus 65 ~~~~l~~~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~-------~~~~~~~-~~~~gl~l~G~~GtGKThLa~aia~ 136 (268)
T PRK08116 65 RIERLKSNSLLDEKFRNSTFENFLFDKGSEKAYKIARKYV-------KKFEEMK-KENVGLLLWGSVGTGKTYLAACIAN 136 (268)
T ss_pred HHHHHHHhcCCCHHHHhcchhcccCChHHHHHHHHHHHHH-------HHHHhhc-cCCceEEEECCCCCCHHHHHHHHHH
Confidence 344455556666555567787664323322 2222222 2232211 2346899999999999999999999
Q ss_pred hh---CCcee
Q 007208 583 RL---GQASL 589 (613)
Q Consensus 583 e~---g~~fi 589 (613)
++ +.+++
T Consensus 137 ~l~~~~~~v~ 146 (268)
T PRK08116 137 ELIEKGVPVI 146 (268)
T ss_pred HHHHcCCeEE
Confidence 85 55554
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.15 E-value=0.00029 Score=74.74 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=42.5
Q ss_pred HhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 508 EKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 508 e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..++...-++..-...+|+++..-..-...+.+.+ ..+-+.|.. + ...+|++|+||||||||+||.|||+++
T Consensus 109 ~~~i~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~---~~fi~~~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 109 KKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAA---LDFLEAYPP-G-EKVKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred HHHHHHcCCCHhHhcCcHHHhcCCChHHHHHHHHH---HHHHHHhhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444443323577887764432222222221 122222332 1 245799999999999999999999997
No 229
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.0073 Score=70.29 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=50.3
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..-||+|||+|.+ . ....+.|.+.|+.-++.+ +|+.+ ++...+...+..++ ..+.+.+++.++-...++
T Consensus 119 k~KVIIIDEad~L-s--~~A~NALLKtLEEPp~~v~fILaT------td~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~ 188 (709)
T PRK08691 119 KYKVYIIDEVHML-S--KSAFNAMLKTLEEPPEHVKFILAT------TDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLA 188 (709)
T ss_pred CcEEEEEECcccc-C--HHHHHHHHHHHHhCCCCcEEEEEe------CCccccchHHHHHH-hhhhcCCCCHHHHHHHHH
Confidence 4469999999984 3 234455677778777776 44443 23455656666655 567788999988888887
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..++.
T Consensus 189 ~Il~k 193 (709)
T PRK08691 189 HVLDS 193 (709)
T ss_pred HHHHH
Confidence 76654
No 230
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.12 E-value=0.016 Score=67.30 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=33.8
Q ss_pred cEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHH
Q 007208 297 SVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 297 ~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~ 347 (613)
.++++|+.+. ++..++..+..+|. .+.+++.+.++...||+..+++
T Consensus 323 ~~VLI~aTt~----~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 323 DFVLIGATTR----DPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred eEEEEEeccc----cccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 3566665332 34567788888886 6789999999999999987653
No 231
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.11 E-value=0.0062 Score=72.39 Aligned_cols=75 Identities=13% Similarity=0.255 Sum_probs=55.5
Q ss_pred CCCEEEEEccchhhhhhhh--HHHHHHHHHHHh-----hc----------CcEEEEeeeeccCCCCccccchHhhccCCc
Q 007208 263 TSPIVVYLRDVDKLIFKSQ--RTYNLFQKMMKK-----LL----------ASVLILGSRIVDLSNDQREVDGRVTALFPY 325 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~--r~~~~l~~~l~~-----l~----------g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~ 325 (613)
..| ||+||++|++ ...+ +..+.|..+++. +. +.|++|++. |.. .+++.+..||.
T Consensus 416 ~~~-villDEidk~-~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta-----N~~-~i~~aLl~R~~- 486 (784)
T PRK10787 416 KNP-LFLLDEIDKM-SSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS-----NSM-NIPAPLLDRME- 486 (784)
T ss_pred CCC-EEEEEChhhc-ccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC-----CCC-CCCHHHhccee-
Confidence 456 6889999995 4332 245667777763 11 567777753 332 59999999995
Q ss_pred eEEeCCCChHHHHHHHHHHHH
Q 007208 326 NIEIRPPEDENHLVSWKSQLE 346 (613)
Q Consensus 326 ~IeI~~P~ee~Rl~Ilk~~L~ 346 (613)
.|++.++.+++-.+|.+.+|.
T Consensus 487 ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 487 VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eeecCCCCHHHHHHHHHHhhh
Confidence 799999999999999999884
No 232
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0041 Score=71.78 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..--|++||++|.+ . ....+.|.+.|+.-++.+++|.. +++...+...|.+|. ..+.+..++.++-.+.++
T Consensus 123 gr~KViIIDEah~L-s--~~AaNALLKTLEEPP~~v~FILa-----Ttep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~ 193 (700)
T PRK12323 123 GRFKVYMIDEVHML-T--NHAFNAMLKTLEEPPEHVKFILA-----TTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLD 193 (700)
T ss_pred CCceEEEEEChHhc-C--HHHHHHHHHhhccCCCCceEEEE-----eCChHhhhhHHHHHH-HhcccCCCChHHHHHHHH
Confidence 34579999999995 3 23445566778877777754443 335577777887776 778888998888887777
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..++.
T Consensus 194 ~Il~~ 198 (700)
T PRK12323 194 AILGE 198 (700)
T ss_pred HHHHH
Confidence 66543
No 233
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.06 E-value=0.025 Score=57.78 Aligned_cols=152 Identities=9% Similarity=0.101 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhh-hcCCCEEEEEccchhhhhhhhHHHHHHHHHHHhh---cC--cEEEEeeeeccCCCCccccchHhhcc
Q 007208 249 LIQSIYRVLCYV-SKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKL---LA--SVLILGSRIVDLSNDQREVDGRVTAL 322 (613)
Q Consensus 249 ~lqaL~evl~s~-s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l---~g--~VlIiGS~~~ds~~~~~~v~~~l~~l 322 (613)
.++.|.+.+... ....+.||+|||++.+-.. ....+..+.+-. .. .|+++|.-.....-. ......+.++
T Consensus 107 ~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~---~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~-~~~~~~l~~r 182 (269)
T TIGR03015 107 LLRELEDFLIEQFAAGKRALLVVDEAQNLTPE---LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQ-SPQLQQLRQR 182 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcccCCHH---HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHc-CchhHHHHhh
Confidence 334454444433 3578899999999995322 222333222211 11 234444311100000 1112356677
Q ss_pred CCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCc---hhhhhhcccCcccchhhHHHHHHHHHH
Q 007208 323 FPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDC---DDLDSINVADTMVLGNYIEEIVVSAVS 399 (613)
Q Consensus 323 F~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c---~dLa~l~~~d~~~~~~~ie~iV~~A~s 399 (613)
+...+++++.+.++-.+.+...+..-.. .. ...++- .-|...|.+ .++.|..++..|+.
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~----~~----------~~~~~~~~~~~i~~~s~G----~p~~i~~l~~~~~~ 244 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGN----RD----------APVFSEGAFDAIHRFSRG----IPRLINILCDRLLL 244 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCC----CC----------CCCcCHHHHHHHHHHcCC----cccHHHHHHHHHHH
Confidence 8889999999999887777766542100 00 001211 224445555 23567777777877
Q ss_pred hhhhcCCCcccCCCceeechhhHHhhhhhhh
Q 007208 400 YHLMNNEDTDYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 400 ~~l~~~~~~~~~~~~l~is~~sl~~al~~~q 430 (613)
.+..+++ -.|+.+.+..++.-+|
T Consensus 245 ~a~~~~~--------~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 245 SAFLEEK--------REIGGEEVREVIAEID 267 (269)
T ss_pred HHHHcCC--------CCCCHHHHHHHHHHhh
Confidence 7765443 2488899999987554
No 234
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.06 E-value=0.00054 Score=79.24 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=39.7
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+|++|.|.+...+.+...+.. ..+..++|+||||||||++|++++...
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999988877665533 123469999999999999999998665
No 235
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.05 E-value=0.00089 Score=68.03 Aligned_cols=56 Identities=30% Similarity=0.449 Sum_probs=44.5
Q ss_pred HHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 507 FEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 507 ~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.++++|.+ +.||.|-++..+.+.-+... |.-| .+++.||||||||+.+.++|.++
T Consensus 17 wVeKYrP~~---------l~dIVGNe~tv~rl~via~~-----------gnmP--~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 17 WVEKYRPSV---------LQDIVGNEDTVERLSVIAKE-----------GNMP--NLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHhhCchH---------HHHhhCCHHHHHHHHHHHHc-----------CCCC--ceEeeCCCCCchhhHHHHHHHHH
Confidence 777777766 55999999999888765543 2222 48999999999999999999885
No 236
>PRK09087 hypothetical protein; Validated
Probab=97.04 E-value=0.0026 Score=64.63 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=49.7
Q ss_pred EEEEccchhhhhhhh-HHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHHHHHHH
Q 007208 267 VVYLRDVDKLIFKSQ-RTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 267 IL~idDiD~~l~~s~-r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl~Ilk~ 343 (613)
+|+|||++.+ ...+ .+++.+....+. +..+|++++..... -....+++..+|. ..++|++|+++.|.++++.
T Consensus 90 ~l~iDDi~~~-~~~~~~lf~l~n~~~~~--g~~ilits~~~p~~--~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 90 PVLIEDIDAG-GFDETGLFHLINSVRQA--GTSLLMTSRLWPSS--WNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred eEEEECCCCC-CCCHHHHHHHHHHHHhC--CCeEEEECCCChHH--hccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 6888999974 3332 355555444443 45677776442211 1123566777774 8999999999999999998
Q ss_pred HHHH
Q 007208 344 QLEE 347 (613)
Q Consensus 344 ~L~~ 347 (613)
.++.
T Consensus 165 ~~~~ 168 (226)
T PRK09087 165 LFAD 168 (226)
T ss_pred HHHH
Confidence 8754
No 237
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.03 E-value=0.0004 Score=64.69 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=26.5
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.|+|+||||+|||++|+.+|..+|++++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 3789999999999999999999999998
No 238
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.03 E-value=0.00062 Score=77.31 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=42.8
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC-Ccee
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG-QASL 589 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g-~~fi 589 (613)
|+|+-|++++++.|.+.+.. ...+++ ...+-++|.||||+|||+||++||..+. .|++
T Consensus 75 F~d~yGlee~ieriv~~l~~------Aa~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y 133 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRH------AAQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIY 133 (644)
T ss_pred hhcccCcHHHHHHHHHHHHH------HHHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcce
Confidence 88999999999999887732 111121 2234577899999999999999998764 3444
No 239
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.03 E-value=0.024 Score=61.07 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=53.8
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-------------hcCcEEEEeeeeccCCCCccccchHhhccCCceEEeC
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-------------LLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIR 330 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-------------l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~ 330 (613)
..-||||||++.+ . .+..+.|...++. ++.++++++++... ...+.+++..+|...|.++
T Consensus 131 ~~GvL~lDEi~~L-~--~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~----eg~l~~~LldRf~l~i~l~ 203 (337)
T TIGR02030 131 NRGILYIDEVNLL-E--DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPE----EGELRPQLLDRFGLHAEIR 203 (337)
T ss_pred cCCEEEecChHhC-C--HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccc----cCCCCHHHHhhcceEEECC
Confidence 6689999999994 3 3333334444432 23456777764322 2358889999999999999
Q ss_pred CCCh-HHHHHHHHHHHH
Q 007208 331 PPED-ENHLVSWKSQLE 346 (613)
Q Consensus 331 ~P~e-e~Rl~Ilk~~L~ 346 (613)
.|.+ ++|.+|++..+.
T Consensus 204 ~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 204 TVRDVELRVEIVERRTE 220 (337)
T ss_pred CCCCHHHHHHHHHhhhh
Confidence 9988 899999987543
No 240
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00068 Score=71.53 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=37.8
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCceeecc-----CCCcchHHHH-HHHHHHHH
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASLMSP-----CLPSLPNGLV-RMRRMFEL 610 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v-----~~~~lge~e~-~Ir~IF~~ 610 (613)
..|||.||.|||||+||+.+|+.+++||-..- -.-|+|+.-. -|-++.+.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqa 153 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQA 153 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHH
Confidence 46999999999999999999999999997222 2347887644 44455443
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.02 E-value=0.00036 Score=68.27 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=22.3
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...+++|+||||||||+||.|+|+++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 242
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.017 Score=65.19 Aligned_cols=75 Identities=8% Similarity=0.127 Sum_probs=54.2
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
..-|++|||+|.+ . ....+.|.+.|++-+..+.+|.. +++..++...|.+++ ..+++.++++++....++.
T Consensus 116 ~~KVvIIDEah~L-s--~~A~NaLLK~LEePp~~v~fIla-----tte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ 186 (491)
T PRK14964 116 KFKVYIIDEVHML-S--NSAFNALLKTLEEPAPHVKFILA-----TTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVD 186 (491)
T ss_pred CceEEEEeChHhC-C--HHHHHHHHHHHhCCCCCeEEEEE-----eCChHHHHHHHHHhh-eeeecccccHHHHHHHHHH
Confidence 4469999999985 3 24455677788888777744443 234566878888877 5589999999998888887
Q ss_pred HHHH
Q 007208 344 QLEE 347 (613)
Q Consensus 344 ~L~~ 347 (613)
.++.
T Consensus 187 ia~~ 190 (491)
T PRK14964 187 IAKK 190 (491)
T ss_pred HHHH
Confidence 6654
No 243
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.99 E-value=0.00067 Score=76.83 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=38.8
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+||.....-.++++.++.. .+. +..+.+=+||+||||||||++++++|+++|+.+.
T Consensus 18 ~~eLavhkkKv~eV~~wl~~------~~~--~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEE------MFS--GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred HHHhhccHHHHHHHHHHHHH------Hhc--cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 44665555555555555542 111 2233445678999999999999999999998876
No 244
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.00076 Score=71.36 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=42.1
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+|++|.|.+.+++.+...+.. + ..+..+||+||+|+|||++|+++|..+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 699999999999999887743 2 345678999999999999999999976
No 245
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.99 E-value=0.0011 Score=70.85 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=38.6
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++.|-++.++.|...+... .. + ..+..++++||||||||+++++++.++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~------~~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPI------LR--G-SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHH------Hc--C-CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 347888898888888776531 11 1 234579999999999999999999875
No 246
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.99 E-value=0.0084 Score=58.44 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=49.9
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
...-||+|||+|.+-. .....|.+.++..+..+ +|+.++ ....+.+.+.++. ..+++.+|++++..+++
T Consensus 95 ~~~kviiide~~~l~~---~~~~~Ll~~le~~~~~~~~il~~~------~~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 95 SGRRVVIIEDAERMNE---AAANALLKTLEEPPPNTLFILITP------SPEKLLPTIRSRC-QVLPFPPLSEEALLQWL 164 (188)
T ss_pred CCeEEEEEechhhhCH---HHHHHHHHHhcCCCCCeEEEEEEC------ChHhChHHHHhhc-EEeeCCCCCHHHHHHHH
Confidence 4667999999999533 23344667777766554 444431 2367778888877 48999999999987777
Q ss_pred HHH
Q 007208 342 KSQ 344 (613)
Q Consensus 342 k~~ 344 (613)
+.+
T Consensus 165 ~~~ 167 (188)
T TIGR00678 165 IRQ 167 (188)
T ss_pred HHc
Confidence 643
No 247
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.98 E-value=0.00067 Score=73.23 Aligned_cols=50 Identities=30% Similarity=0.350 Sum_probs=41.3
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...|++|.|++++|..|.-.+.. ....|+||+||+|||||++|++++..+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45699999999999988766544 223589999999999999999998775
No 248
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0011 Score=72.11 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=44.2
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..++++|.|.+++++.|...+.. + ..+..+||+||+|+||+++|.++|+.+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999887765 2 456689999999999999999999886
No 249
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.00076 Score=69.73 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=24.6
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+.+++|+||||+|||+||.|||+++-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 457899999999999999999999973
No 250
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.95 E-value=0.00065 Score=78.55 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=45.4
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+++||.|.++..+.++.++.. . ..+..+.+-++|+||||||||++++++|.+++..++
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~-~-------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKA-Q-------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-c-------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 3467999999998888877654 1 112234455899999999999999999999987764
No 251
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.94 E-value=0.00037 Score=64.11 Aligned_cols=27 Identities=48% Similarity=0.885 Sum_probs=24.8
Q ss_pred eeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
|++.||||+|||++|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999999997666
No 252
>PRK08727 hypothetical protein; Validated
Probab=96.94 E-value=0.015 Score=59.17 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=46.9
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhccC--CceEEeCCCChHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTALF--PYNIEIRPPEDENHLV 339 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~lF--~~~IeI~~P~ee~Rl~ 339 (613)
+.-+|+|||++.+.........+| .+++..- +.-+|+.++.. ...-..+.+++.++| ...+++++|++++|.+
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf-~l~n~~~~~~~~vI~ts~~~--p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~ 169 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALF-DFHNRARAAGITLLYTARQM--PDGLALVLPDLRSRLAQCIRIGLPVLDDVARAA 169 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHH-HHHHHHHHcCCeEEEECCCC--hhhhhhhhHHHHHHHhcCceEEecCCCHHHHHH
Confidence 456999999998543322211122 2343321 32244443321 112233567787776 5688999999999999
Q ss_pred HHHHHH
Q 007208 340 SWKSQL 345 (613)
Q Consensus 340 Ilk~~L 345 (613)
+++...
T Consensus 170 iL~~~a 175 (233)
T PRK08727 170 VLRERA 175 (233)
T ss_pred HHHHHH
Confidence 999754
No 253
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.93 E-value=0.023 Score=66.21 Aligned_cols=76 Identities=12% Similarity=0.255 Sum_probs=50.1
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-------------hcCcEEEEeeeeccCCCCccccchHhhccCCceEEeC
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-------------LLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIR 330 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-------------l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~ 330 (613)
.--||||||++.+ . ......|...|+. ++.++++|++... ....+..++..+|...|+++
T Consensus 126 ~~GiL~lDEi~~l-~--~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np----~eg~l~~~L~dR~~l~i~v~ 198 (633)
T TIGR02442 126 HRGILYIDEVNLL-D--DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP----EEGDLRPQLLDRFGLCVDVA 198 (633)
T ss_pred CCCeEEeChhhhC-C--HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC----CCCCCCHHHHhhcceEEEcc
Confidence 3459999999994 3 2333344445542 2235677775321 22357889999999999999
Q ss_pred CCC-hHHHHHHHHHHHH
Q 007208 331 PPE-DENHLVSWKSQLE 346 (613)
Q Consensus 331 ~P~-ee~Rl~Ilk~~L~ 346 (613)
.|. .++|.++++..+.
T Consensus 199 ~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 199 APRDPEERVEIIRRRLA 215 (633)
T ss_pred CCCchHHHHHHHHHHHh
Confidence 886 4778888876544
No 254
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.93 E-value=0.0012 Score=72.44 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=22.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...++||||||||||+|++|+|+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999987
No 255
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.02 Score=64.95 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=47.5
Q ss_pred CEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHH
Q 007208 265 PIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQ 344 (613)
Q Consensus 265 P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~ 344 (613)
--|++||++|.+ .. ...+.|.+.|+.-+..+.+|... .+..++...|.++. ..+++.++.+++-...++..
T Consensus 120 ~kV~iIDE~~~l-s~--~a~naLLk~LEepp~~~~fIlat-----td~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~i 190 (509)
T PRK14958 120 FKVYLIDEVHML-SG--HSFNALLKTLEEPPSHVKFILAT-----TDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHL 190 (509)
T ss_pred cEEEEEEChHhc-CH--HHHHHHHHHHhccCCCeEEEEEE-----CChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHH
Confidence 369999999995 32 34556777888888777544431 23455655676665 56678877777665555555
Q ss_pred HH
Q 007208 345 LE 346 (613)
Q Consensus 345 L~ 346 (613)
++
T Consensus 191 l~ 192 (509)
T PRK14958 191 LK 192 (509)
T ss_pred HH
Confidence 54
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.92 E-value=0.00055 Score=73.38 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=22.9
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++|+||||||||+||.|||+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 789999999999999999999986
No 257
>PRK08727 hypothetical protein; Validated
Probab=96.92 E-value=0.0014 Score=66.60 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.5
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..++|+||+|||||+|++|++.++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999999998774
No 258
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.0097 Score=68.85 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=49.4
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHH
Q 007208 266 IVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
-|++|||+|.+ .. ...+.|.+.|+.-++.+.+|-. +.++.++...+.++. ..+++.++++++-.+.++..+
T Consensus 126 KV~IIDEvh~L-s~--~a~NaLLKtLEEPP~~~~fIL~-----Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 126 KVFMIDEVHML-TN--TAFNAMLKTLEEPPEYLKFVLA-----TTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred eEEEEEChhhC-CH--HHHHHHHHhcccCCCCeEEEEE-----ECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHH
Confidence 49999999995 32 3355566777777777644332 123445555666665 788999999988877777665
Q ss_pred HH
Q 007208 346 EE 347 (613)
Q Consensus 346 ~~ 347 (613)
..
T Consensus 197 ~~ 198 (618)
T PRK14951 197 AA 198 (618)
T ss_pred HH
Confidence 43
No 259
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.00094 Score=77.19 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=44.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..+|+||.|.+++++.|...+.. + ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35699999999999999888764 2 34567999999999999999999998763
No 260
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.015 Score=67.42 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=48.1
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
.--||+|||+|.+ . ....+.|.+.|+.-++.+++|... ++...+...|.++. ..+++..|..++-...+++
T Consensus 121 ~~KViIIDEad~L-t--~~a~naLLK~LEePp~~tvfIL~t-----~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 121 RWKVYVIDECHML-S--TAAFNALLKTLEEPPPRVVFVLAT-----TDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred CceEEEEECcccc-C--HHHHHHHHHHHhcCCcCeEEEEEe-----CChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHH
Confidence 3469999999995 2 345566777888877777555432 23445666676665 4577777777766655555
Q ss_pred HHH
Q 007208 344 QLE 346 (613)
Q Consensus 344 ~L~ 346 (613)
...
T Consensus 192 ia~ 194 (620)
T PRK14948 192 IAE 194 (620)
T ss_pred HHH
Confidence 443
No 261
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.87 E-value=0.0049 Score=60.02 Aligned_cols=36 Identities=36% Similarity=0.604 Sum_probs=33.3
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCC----eEEEeecccch
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEA----KLLLLDVTDFS 141 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a----~LL~lD~~d~~ 141 (613)
-+||.||.+.+++.|||+||+++.. +|+.+|.+.|+
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 4889999999999999999999997 99999999987
No 262
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.86 E-value=0.0011 Score=73.79 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...++||||||||||+|++|+|+++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999999997
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=96.86 E-value=0.0014 Score=66.63 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..++|+||+|||||+|++|+++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999764
No 264
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.018 Score=66.49 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=50.7
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-||+|||+|.+-. ...+.|.+.|+.-++.+++|.. ++....+...|.+++ ..|+++++++++-..+++
T Consensus 118 g~~kVIIIDEad~Lt~---~a~naLLk~LEEP~~~~ifILa-----Tt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~ 188 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR---EAFNALLKTLEEPPARVTFVLA-----TTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLT 188 (624)
T ss_pred CCceEEEEEChHhCCH---HHHHHHHHHhhccCCCEEEEEe-----cCChhhhhHHHHhhh-hccccCCCCHHHHHHHHH
Confidence 3457999999999632 2334566677776677654443 223455655666665 378999999999888887
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..++.
T Consensus 189 ~il~~ 193 (624)
T PRK14959 189 KVLGR 193 (624)
T ss_pred HHHHH
Confidence 65543
No 265
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.85 E-value=0.00039 Score=64.71 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=22.7
Q ss_pred eeeecCCCCCchhhhhhhHHhhCCceeeccCCC
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP 595 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~ 595 (613)
+||.|+||+|||++|+++|..+|..|...-..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tp 34 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTP 34 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--T
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecC
Confidence 799999999999999999999999997433333
No 266
>PRK06526 transposase; Provisional
Probab=96.82 E-value=0.00069 Score=70.02 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.2
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...+++|+||||||||++|.+|+.++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34689999999999999999999875
No 267
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.82 E-value=0.0024 Score=69.24 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=36.4
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+.+.|=++..+.|...+.. ... + ..+..++++||||||||++++.++.++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~------~~~--~-~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 29 PENLPHREEQIEELAFALRP------ALR--G-SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHH------HhC--C-CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34566767777777766633 111 1 223568999999999999999999886
No 268
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.021 Score=64.09 Aligned_cols=75 Identities=8% Similarity=0.072 Sum_probs=52.0
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-|++|||+|.+ . ....+.|.+.|+.-++.|++|.. +.+...+...|..|.. .+.+.++..++-.+.++
T Consensus 120 g~~KV~IIDEah~L-s--~~A~NALLKtLEEPp~~viFILa-----Tte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~ 190 (484)
T PRK14956 120 GKYKVYIIDEVHML-T--DQSFNALLKTLEEPPAHIVFILA-----TTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSE 190 (484)
T ss_pred CCCEEEEEechhhc-C--HHHHHHHHHHhhcCCCceEEEee-----cCChhhccHHHHhhhh-eeeecCCCHHHHHHHHH
Confidence 45679999999995 3 33445566677777778866654 3346778888888874 57777777766666666
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..++
T Consensus 191 ~i~~ 194 (484)
T PRK14956 191 KLCK 194 (484)
T ss_pred HHHH
Confidence 5544
No 269
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.81 E-value=0.00081 Score=71.71 Aligned_cols=37 Identities=41% Similarity=0.732 Sum_probs=32.1
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCceeeccCCCcc
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLPSL 597 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~~l 597 (613)
+.+||-||||||||++|+++|..++.+|+...+.+.+
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 5699999999999999999999999999965555543
No 270
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.81 E-value=0.0008 Score=61.98 Aligned_cols=28 Identities=39% Similarity=0.552 Sum_probs=26.3
Q ss_pred eeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
|.+.|+||||||++|+.+|..+++|++.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~ 29 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLD 29 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 6789999999999999999999999983
No 271
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.80 E-value=0.021 Score=61.86 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=53.6
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-------------hcCcEEEEeeeeccCCCCccccchHhhccCCceEEeC
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-------------LLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIR 330 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-------------l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~ 330 (613)
.--||||||++.+ .. +..+.|...++. ++.++++++++... ...+.+++..+|...|.|.
T Consensus 144 ~~GiL~lDEInrL-~~--~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~----eg~l~~~LldRf~l~i~l~ 216 (350)
T CHL00081 144 NRGILYVDEVNLL-DD--HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPE----EGELRPQLLDRFGMHAEIR 216 (350)
T ss_pred CCCEEEecChHhC-CH--HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc----cCCCCHHHHHHhCceeecC
Confidence 5679999999994 32 222223334432 34567777764432 2358899999999999999
Q ss_pred CCCh-HHHHHHHHHHHH
Q 007208 331 PPED-ENHLVSWKSQLE 346 (613)
Q Consensus 331 ~P~e-e~Rl~Ilk~~L~ 346 (613)
.|.+ +.|.+|++..+.
T Consensus 217 ~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 217 TVKDPELRVKIVEQRTS 233 (350)
T ss_pred CCCChHHHHHHHHhhhc
Confidence 9985 999999997643
No 272
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.015 Score=66.93 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=52.0
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHH
Q 007208 266 IVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
-|++|||+|.+ . ....+.|.+.|+.-++.+++|.. +.....+...+.+++. .+++.+|++++....++..+
T Consensus 121 KVIIIDEad~L-t--~~A~NaLLKtLEEPp~~tvfIL~-----Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 121 KVYIIDEAHML-S--TSAWNALLKTLEEPPKHVVFIFA-----TTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred EEEEEechHhC-C--HHHHHHHHHHHHhCCCcEEEEEE-----CCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHH
Confidence 48999999995 3 23445677788887776644432 2234677778887775 79999999999888888755
Q ss_pred H
Q 007208 346 E 346 (613)
Q Consensus 346 ~ 346 (613)
.
T Consensus 192 ~ 192 (605)
T PRK05896 192 K 192 (605)
T ss_pred H
Confidence 4
No 273
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.79 E-value=0.025 Score=59.08 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
.+-||+|||+|.+-.. ....|...++..+..+ +|+.++ ....+.+.+.+++. .+++++|++++...+++
T Consensus 102 ~~~vviiDe~~~l~~~---~~~~L~~~le~~~~~~~lIl~~~------~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~ 171 (319)
T PRK00440 102 PFKIIFLDEADNLTSD---AQQALRRTMEMYSQNTRFILSCN------YSSKIIDPIQSRCA-VFRFSPLKKEAVAERLR 171 (319)
T ss_pred CceEEEEeCcccCCHH---HHHHHHHHHhcCCCCCeEEEEeC------CccccchhHHHHhh-eeeeCCCCHHHHHHHHH
Confidence 4679999999996332 2334566677666543 444331 22445556766665 58999999999888887
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..+..
T Consensus 172 ~~~~~ 176 (319)
T PRK00440 172 YIAEN 176 (319)
T ss_pred HHHHH
Confidence 76543
No 274
>PRK08181 transposase; Validated
Probab=96.78 E-value=0.00063 Score=70.93 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=22.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+++|+||||||||+||.|+|.++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH
Confidence 3579999999999999999999765
No 275
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.019 Score=66.80 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=55.4
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..--|++||++|.+ . ....+.|.+.|+.-++.+++|.. +.+..++...|..|. ..+.+.+++.++-...++
T Consensus 118 g~~KV~IIDEah~L-s--~~a~NALLKtLEEPp~~v~FIL~-----Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 118 GRFKVYLIDEVHML-S--RHSFNALLKTLEEPPEHVKFLLA-----TTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLE 188 (647)
T ss_pred CCCEEEEEechHhC-C--HHHHHHHHHHHHcCCCCeEEEEe-----cCCccccchHHHhhh-eEeeCCCCCHHHHHHHHH
Confidence 34569999999995 3 34456677788888888866654 234567777777774 888999999998888887
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 189 ~il~ 192 (647)
T PRK07994 189 HILQ 192 (647)
T ss_pred HHHH
Confidence 7653
No 276
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.77 E-value=0.03 Score=64.62 Aligned_cols=78 Identities=6% Similarity=0.028 Sum_probs=51.0
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-------------hcCcEEEEeeeeccCCCCccccchHhhccCCceEEeC
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-------------LLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIR 330 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-------------l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~ 330 (613)
.--||||||++.+ . ......|...|+. ++..+.||++..... ....+.+++..+|..+|.+.
T Consensus 84 ~~GvL~lDEi~rl-~--~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e--~~g~L~~~LldRf~l~v~~~ 158 (589)
T TIGR02031 84 PRGVLYVDMANLL-D--DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE--GGGGLPDHLLDRLALHVSLE 158 (589)
T ss_pred CCCcEeccchhhC-C--HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc--ccCCCCHHHHHhccCeeecC
Confidence 5568999999994 3 2333334444542 123466666533221 11368899999999998776
Q ss_pred -CCChHHHHHHHHHHHH
Q 007208 331 -PPEDENHLVSWKSQLE 346 (613)
Q Consensus 331 -~P~ee~Rl~Ilk~~L~ 346 (613)
+|..++|.+|++..+.
T Consensus 159 ~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 159 DVASQDLRVEIVRRERC 175 (589)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 5677779999988763
No 277
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.027 Score=64.42 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=52.3
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-|++|||+|.+ . ....+.|.+.|+.-++.+++|... .+...+...|.++. ..+++.+++.++-...++
T Consensus 118 g~~kViIIDEa~~l-s--~~a~naLLK~LEepp~~v~fIL~T-----td~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~ 188 (546)
T PRK14957 118 GRYKVYLIDEVHML-S--KQSFNALLKTLEEPPEYVKFILAT-----TDYHKIPVTILSRC-IQLHLKHISQADIKDQLK 188 (546)
T ss_pred CCcEEEEEechhhc-c--HHHHHHHHHHHhcCCCCceEEEEE-----CChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHH
Confidence 35579999999995 3 234556778888888777555432 23455655666666 789999999988776777
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 189 ~il~ 192 (546)
T PRK14957 189 IILA 192 (546)
T ss_pred HHHH
Confidence 6544
No 278
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.74 E-value=0.017 Score=50.74 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCe---EEEeecccc
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAK---LLLLDVTDF 140 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~---LL~lD~~d~ 140 (613)
.+.|+|.||++.++++++++||+.+... .+.++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 4679999999999999999999999997 777776443
No 279
>PRK06921 hypothetical protein; Provisional
Probab=96.74 E-value=0.00087 Score=69.70 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+++|+||||||||+||.|||+++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999999986
No 280
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.032 Score=60.22 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=48.2
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
.+-||+|||+|.+-.. ....|.+.++..+... +|+.+ +....+...+.+++. .+++.+|++++...++.
T Consensus 108 ~~kiviIDE~~~l~~~---~~~~ll~~le~~~~~~~~Il~~------~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 108 KYKIYIIDEVHMLSSA---AFNAFLKTLEEPPAHAIFILAT------TEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLA 177 (367)
T ss_pred CcEEEEEeChhhcCHH---HHHHHHHHHhCCCCceEEEEEe------CCcccCCHHHHhcce-eEecCCccHHHHHHHHH
Confidence 4579999999985332 2334555566655554 44443 123566667777765 58999999998887777
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..+.+
T Consensus 178 ~~~~~ 182 (367)
T PRK14970 178 GIAVK 182 (367)
T ss_pred HHHHH
Confidence 65543
No 281
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.016 Score=63.64 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=40.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCe
Q 007208 64 TFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAK 131 (613)
Q Consensus 64 sf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~ 131 (613)
+|+++-+. |+++..|..+.-- . ..+.++|++||+++++.++|+++|+++.+.
T Consensus 14 ~~~eiiGq--~~~~~~L~~~~~~----~----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 14 KFADITAQ--EHITRTIQNSLRM----G----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred cHhhccCh--HHHHHHHHHHHHh----C----------CcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 68888776 8888888765541 0 123359999999999999999999999875
No 282
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.68 E-value=0.007 Score=67.88 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=45.1
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHHH-----------hhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCCh-
Q 007208 267 VVYLRDVDKLIFKSQRTYNLFQKMMK-----------KLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPED- 334 (613)
Q Consensus 267 IL~idDiD~~l~~s~r~~~~l~~~l~-----------~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~e- 334 (613)
|||+|||.++ +.+.-+.|...++ +++-++++++++... +.....+++..+|...|.|++|++
T Consensus 110 lLfLDEI~ra---sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP---E~g~~leAL~DRFliri~vp~l~~~ 183 (498)
T PRK13531 110 IVFLDEIWKA---GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP---EADSSLEALYDRMLIRLWLDKVQDK 183 (498)
T ss_pred EEeecccccC---CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc---ccCCchHHhHhhEEEEEECCCCCch
Confidence 9999999872 2333334444452 234456777764221 123345688889999999999985
Q ss_pred HHHHHHHHH
Q 007208 335 ENHLVSWKS 343 (613)
Q Consensus 335 e~Rl~Ilk~ 343 (613)
+...+++..
T Consensus 184 ~~e~~lL~~ 192 (498)
T PRK13531 184 ANFRSMLTS 192 (498)
T ss_pred HHHHHHHHc
Confidence 555677764
No 283
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.018 Score=66.40 Aligned_cols=73 Identities=10% Similarity=0.126 Sum_probs=50.1
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHH
Q 007208 266 IVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
-|++|||+|.+ . ....+.|.+.|+.-++.+++|-. ++++.++...|.++. ..+++.+++.++-...++..+
T Consensus 121 KVvIIdev~~L-t--~~a~naLLk~LEepp~~~~fIl~-----t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 121 KIFIIDEVHML-S--TNAFNALLKTLEEPPPHVKFIFA-----TTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred eEEEEEChhhC-C--HHHHHHHHHHHHcCCCCeEEEEE-----eCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHH
Confidence 59999999985 3 24456788888888877644432 234467777777765 478888888877666666554
Q ss_pred HH
Q 007208 346 EE 347 (613)
Q Consensus 346 ~~ 347 (613)
.+
T Consensus 192 ~~ 193 (576)
T PRK14965 192 DQ 193 (576)
T ss_pred HH
Confidence 43
No 284
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.0026 Score=68.77 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=45.0
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+..+++|.|.+++++.+...+.. + ..+..+||+||+|+|||++|+++|+.+..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 45689999999999999887764 2 34568999999999999999999998754
No 285
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.62 E-value=0.032 Score=64.06 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=52.4
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-|++||++|.+-. ...+.|.+.++.-+..+++|.. +..+..+...|.+++. .+++.+|..++-...++
T Consensus 118 ~~~kViIIDE~~~Lt~---~a~naLLKtLEepp~~~ifIla-----tt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~ 188 (559)
T PRK05563 118 AKYKVYIIDEVHMLST---GAFNALLKTLEEPPAHVIFILA-----TTEPHKIPATILSRCQ-RFDFKRISVEDIVERLK 188 (559)
T ss_pred CCeEEEEEECcccCCH---HHHHHHHHHhcCCCCCeEEEEE-----eCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHH
Confidence 4557999999999632 3444566677777777644443 1234667777877764 68899999988888887
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..++.
T Consensus 189 ~i~~~ 193 (559)
T PRK05563 189 YILDK 193 (559)
T ss_pred HHHHH
Confidence 76654
No 286
>PRK06620 hypothetical protein; Validated
Probab=96.61 E-value=0.016 Score=58.42 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=48.3
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHHHHHHH
Q 007208 266 IVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl~Ilk~ 343 (613)
-+|+|||++.+. ...+.+++..+.+. |..+|+++..... .-.+ ++++.||. -.++|++|+++.|..++++
T Consensus 87 d~lliDdi~~~~--~~~lf~l~N~~~e~--g~~ilits~~~p~---~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 87 NAFIIEDIENWQ--EPALLHIFNIINEK--QKYLLLTSSDKSR---NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred CEEEEeccccch--HHHHHHHHHHHHhc--CCEEEEEcCCCcc---ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 578999999751 12344444444433 5567777654332 2235 67777665 3699999999999999887
Q ss_pred HHH
Q 007208 344 QLE 346 (613)
Q Consensus 344 ~L~ 346 (613)
...
T Consensus 159 ~~~ 161 (214)
T PRK06620 159 HFS 161 (214)
T ss_pred HHH
Confidence 654
No 287
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.60 E-value=0.0012 Score=61.67 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=25.4
Q ss_pred eeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++|.||||+|||++|+.++..++++++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 678999999999999999999998887
No 288
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.03 Score=65.78 Aligned_cols=89 Identities=11% Similarity=0.192 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhc-CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEE
Q 007208 250 IQSIYRVLCYVSK-TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIE 328 (613)
Q Consensus 250 lqaL~evl~s~s~-~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~Ie 328 (613)
++.|.+.+....- ...-|++|||+|.+ .. .....|.+.|+.-++.+++|.. +.++..+...|.+|+. .++
T Consensus 103 IReLie~~~~~P~~g~~KV~IIDEa~~L-T~--~A~NALLKtLEEPP~~tifILa-----Tte~~KLl~TI~SRcq-~ie 173 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKIYIIDEVHML-SK--SAFNALLKTLEEPPKHVIFILA-----TTEVHKIPLTILSRVQ-RFN 173 (725)
T ss_pred HHHHHHHHHhchhcCCCEEEEEEChhhC-CH--HHHHHHHHHhhcCCCceEEEEE-----cCChhhhhHHHHhhce-eEE
Confidence 4444444433222 34469999999995 32 3455677788888877654443 2244677777888875 899
Q ss_pred eCCCChHHHHHHHHHHHHH
Q 007208 329 IRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 329 I~~P~ee~Rl~Ilk~~L~~ 347 (613)
+.+|..++-...++..++.
T Consensus 174 F~~L~~eeI~~~L~~il~k 192 (725)
T PRK07133 174 FRRISEDEIVSRLEFILEK 192 (725)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 9999999988888765543
No 289
>PRK04132 replication factor C small subunit; Provisional
Probab=96.56 E-value=0.045 Score=65.43 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=53.7
Q ss_pred CEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHH
Q 007208 265 PIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQ 344 (613)
Q Consensus 265 P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~ 344 (613)
.-||+||++|.+ . ....+.|.+.++..++.+.+|.. .+++..+...|..+. ..+.+++|.+++-...+++.
T Consensus 631 ~KVvIIDEaD~L-t--~~AQnALLk~lEep~~~~~FILi-----~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 631 FKIIFLDEADAL-T--QDAQQALRRTMEMFSSNVRFILS-----CNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CEEEEEECcccC-C--HHHHHHHHHHhhCCCCCeEEEEE-----eCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 469999999995 3 23445588888888888755554 345567777777764 68899999998888777766
Q ss_pred HH
Q 007208 345 LE 346 (613)
Q Consensus 345 L~ 346 (613)
++
T Consensus 702 ~~ 703 (846)
T PRK04132 702 AE 703 (846)
T ss_pred HH
Confidence 54
No 290
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.0015 Score=73.58 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=46.3
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.-+|+|+.|.+++...|...+.. . +...+.||.||.|||||++||.+|+.+++.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~----------~--ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN----------G--RIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh----------C--cchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 34599999999999999998876 1 345689999999999999999999998765
No 291
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0023 Score=70.02 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=40.9
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCceeec-----cCCCcchHH-HHHHHHHHHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASLMS-----PCLPSLPNG-LVRMRRMFELY 611 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~-----v~~~~lge~-e~~Ir~IF~~A 611 (613)
..|||.||.|+|||+||+.+|.-+++||... ...-|+|+. |.-|.++...|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A 283 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEA 283 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHc
Confidence 4699999999999999999999999999832 334588876 45677776655
No 292
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.023 Score=64.84 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=48.7
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
..-|++|||+|.+ . ....+.|.+.|+.-++.+++|... .++..+...|.++. ..+++.+|+.++-...++.
T Consensus 119 ~~kVvIIDEad~l-s--~~a~naLLK~LEepp~~~~fIL~t-----~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 119 RFKVYIIDEVHML-S--KSAFNAMLKTLEEPPEHVKFILAT-----TDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred CceEEEEcCcccC-C--HHHHHHHHHHHhCCCCCEEEEEEe-----CChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHH
Confidence 3459999999995 3 234556777788877777544431 23344544455554 6788888988887766666
Q ss_pred HHH
Q 007208 344 QLE 346 (613)
Q Consensus 344 ~L~ 346 (613)
.+.
T Consensus 190 il~ 192 (527)
T PRK14969 190 ILE 192 (527)
T ss_pred HHH
Confidence 553
No 293
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.52 E-value=0.0013 Score=58.70 Aligned_cols=23 Identities=43% Similarity=0.876 Sum_probs=20.4
Q ss_pred eeeecCCCCCchhhhhhhHHhhC
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g 585 (613)
|.||||||+|||++|+.+|+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999887764
No 294
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.057 Score=60.46 Aligned_cols=75 Identities=9% Similarity=0.157 Sum_probs=53.0
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-||+|||+|.+-. ...+.|.+.++.-++.+++|.. +++...+.+.|.+++. .|++.+|++++-...++
T Consensus 120 ~~~kvvIIdead~lt~---~~~n~LLk~lEep~~~~~~Il~-----t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~ 190 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK---EAFNSLLKTLEEPPQHVKFFLA-----TTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLA 190 (451)
T ss_pred CCCEEEEEecHHhhCH---HHHHHHHHHhhcCCCCceEEEE-----eCChHhcchHHHHhce-EEeCCCCCHHHHHHHHH
Confidence 5678999999999532 2345577778887777644443 1234667777877774 68999999998877777
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..++
T Consensus 191 ~~~~ 194 (451)
T PRK06305 191 LIAK 194 (451)
T ss_pred HHHH
Confidence 6554
No 295
>PRK13946 shikimate kinase; Provisional
Probab=96.52 E-value=0.0017 Score=63.43 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=28.1
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+.|+|.|+||||||++++.+|..+|++|+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 356999999999999999999999999998
No 296
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.51 E-value=0.0024 Score=74.06 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=42.2
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+..|++|.|.+++++.|...+.. .+.++|+||||||||++|+++|..+..
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 46799999999999988876653 136999999999999999999998753
No 297
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.0025 Score=67.86 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=42.6
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|++|.|.+++++.+...+.. + ..+..+||+||+|+||+.+|.++|..+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999988865 2 335689999999999999999999886
No 298
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.50 E-value=0.0028 Score=70.41 Aligned_cols=26 Identities=42% Similarity=0.668 Sum_probs=23.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+.++|+||||||||++|+++|..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999999875
No 299
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.044 Score=65.47 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
.--|++|||++.+ +....+.|.+.|+.-++.+.+|.. +.+...+...|..|. ..+.++++..++-...++.
T Consensus 119 k~KViIIDEAh~L---T~eAqNALLKtLEEPP~~vrFILa-----TTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~ 189 (944)
T PRK14949 119 RFKVYLIDEVHML---SRSSFNALLKTLEEPPEHVKFLLA-----TTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNH 189 (944)
T ss_pred CcEEEEEechHhc---CHHHHHHHHHHHhccCCCeEEEEE-----CCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHH
Confidence 4469999999996 234556678888888888866664 223455666666554 6788999988888877777
Q ss_pred HHH
Q 007208 344 QLE 346 (613)
Q Consensus 344 ~L~ 346 (613)
.+.
T Consensus 190 il~ 192 (944)
T PRK14949 190 ILT 192 (944)
T ss_pred HHH
Confidence 554
No 300
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.48 E-value=0.0027 Score=70.65 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...++||||||||||+|++|+|+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Confidence 3469999999999999999999985
No 301
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.47 E-value=0.0036 Score=58.12 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=36.4
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCC--ceeeecCCCCCchhhhhhhHHhh
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCR--GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~--giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|-|++-+.+.+...+..-+..+ .|.+ -+.|+||||||||.+++-||..+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 56688888888877776533222 2333 35589999999999999999883
No 302
>PRK13948 shikimate kinase; Provisional
Probab=96.47 E-value=0.0021 Score=63.29 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=29.7
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.++..|+|.|++|||||++++.+|..+|.+|+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i 39 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFI 39 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 35678999999999999999999999999999
No 303
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.46 E-value=0.0045 Score=60.05 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.6
Q ss_pred CceeeecCCCCCchhhhhhhHHhh---CCceeeccCCCc
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCLPS 596 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~~~ 596 (613)
..||++|++||||+++|++|.... +.||+...++..
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 569999999999999999999875 468996666543
No 304
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.055 Score=61.10 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=51.9
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
...-|++|||+|.+-. ...+.|.+.++..+..+ +|+++ ++...+...+.+++. .+++.+|+.++....+
T Consensus 118 ~~~KVvIIDEad~Lt~---~a~naLLk~LEepp~~~v~Il~t------t~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L 187 (486)
T PRK14953 118 GKYKVYIIDEAHMLTK---EAFNALLKTLEEPPPRTIFILCT------TEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYL 187 (486)
T ss_pred CCeeEEEEEChhhcCH---HHHHHHHHHHhcCCCCeEEEEEE------CCHHHHHHHHHHhce-EEEcCCCCHHHHHHHH
Confidence 4557999999998532 23344566677766554 55554 234567777777775 7999999999998888
Q ss_pred HHHHHH
Q 007208 342 KSQLEE 347 (613)
Q Consensus 342 k~~L~~ 347 (613)
+.++..
T Consensus 188 ~~i~k~ 193 (486)
T PRK14953 188 KRICNE 193 (486)
T ss_pred HHHHHH
Confidence 876554
No 305
>PHA00729 NTP-binding motif containing protein
Probab=96.43 E-value=0.0015 Score=66.36 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=23.2
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCC
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.++++|+||||||++|.+||.+++.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999999999863
No 306
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.42 E-value=0.0028 Score=71.03 Aligned_cols=26 Identities=31% Similarity=0.628 Sum_probs=23.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..+||+||||||||++|+++|..++.
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 56999999999999999999997653
No 307
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.41 E-value=0.015 Score=64.67 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=25.0
Q ss_pred CCCceEeecchhHHHHHHHHHHHhhhCC
Q 007208 103 ASQAILLSGPAELYQQMLAKALAHFFEA 130 (613)
Q Consensus 103 ~~~~ILLsGP~e~yqe~LaKALA~~f~a 130 (613)
..+.|+|+||++++++.|||+||+.+..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3678999999999999999999998753
No 308
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.41 E-value=0.0042 Score=57.26 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=30.9
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
.|||.||+++++..||++||+-++.+++.+..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~ 35 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSD 35 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccc
Confidence 38999999999999999999999999999877554
No 309
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.39 E-value=0.0037 Score=67.26 Aligned_cols=48 Identities=31% Similarity=0.430 Sum_probs=38.3
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|..|.|.+++|..+.-....| ...++|+.||||+|||+++++++.-+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3788999999998775443331 13579999999999999999999776
No 310
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0024 Score=60.93 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=27.1
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.||+.|-||||||++|..||...|+++|
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i 36 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYI 36 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceE
Confidence 5999999999999999999999999998
No 311
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.0039 Score=65.14 Aligned_cols=25 Identities=40% Similarity=0.757 Sum_probs=23.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..+||+||||||||++|.++|+++.
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 3799999999999999999999987
No 312
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.36 E-value=0.0034 Score=69.97 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++++||||||+|||+|++|+|+++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999976
No 313
>PLN02200 adenylate kinase family protein
Probab=96.31 E-value=0.003 Score=64.52 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=28.1
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.+.-|++.||||+|||++|+.+|..+|++.+
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 34456889999999999999999999999877
No 314
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.055 Score=62.41 Aligned_cols=74 Identities=7% Similarity=0.064 Sum_probs=53.1
Q ss_pred CEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHH
Q 007208 265 PIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQ 344 (613)
Q Consensus 265 P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~ 344 (613)
--|++|||++.+ . ....+.|.+.|+.-++.+++|.. +.+..++...|.++ -..+++.++..++-.+.++..
T Consensus 119 ~KVvIIDEah~L-t--~~A~NALLK~LEEpp~~~~fIL~-----tte~~kll~TI~SR-c~~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 119 YRIFIVDEAHMV-T--TAGFNALLKIVEEPPEHLIFIFA-----TTEPEKVLPTIRSR-THHYPFRLLPPRTMRALIARI 189 (584)
T ss_pred ceEEEEECCCcC-C--HHHHHHHHHHHhcCCCCeEEEEE-----eCChHhhHHHHHHh-ceEEEeeCCCHHHHHHHHHHH
Confidence 359999999995 2 34556678888888888765553 22346777777777 468899999888877777665
Q ss_pred HHH
Q 007208 345 LEE 347 (613)
Q Consensus 345 L~~ 347 (613)
++.
T Consensus 190 ~~~ 192 (584)
T PRK14952 190 CEQ 192 (584)
T ss_pred HHH
Confidence 543
No 315
>PRK09183 transposase/IS protein; Provisional
Probab=96.27 E-value=0.0023 Score=66.24 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...++|+||||||||+||.+++.++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998764
No 316
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.08 Score=58.38 Aligned_cols=76 Identities=18% Similarity=0.389 Sum_probs=51.3
Q ss_pred EEEEEccchhhhhhh---hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHHHH
Q 007208 266 IVVYLRDVDKLIFKS---QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHLVS 340 (613)
Q Consensus 266 ~IL~idDiD~~l~~s---~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl~I 340 (613)
-+|+|||++.+..+. ..|.+.|..+.+. +.-||+.|... ......+.+++..||. -.++|.+|++|.|..|
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~--P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRP--PKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCC--chhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 478999999965552 3477777666654 33566655221 1122335677877665 5789999999999999
Q ss_pred HHHHH
Q 007208 341 WKSQL 345 (613)
Q Consensus 341 lk~~L 345 (613)
++...
T Consensus 253 L~kka 257 (408)
T COG0593 253 LRKKA 257 (408)
T ss_pred HHHHH
Confidence 99753
No 317
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.25 E-value=0.0067 Score=61.24 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+.||||+|+|||+|.+|++++.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999874
No 318
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.0043 Score=66.38 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=40.9
Q ss_pred ccccccc-cHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 524 TFADIGA-LEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 524 ~~ddIgG-l~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.|++|.| .+.+.+.+...+.. + +.+..+||+||+|+|||++|+++|+.+-
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------N-RLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 4788877 88899888887654 2 4567789999999999999999998864
No 319
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.31 Score=55.72 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=52.2
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHH
Q 007208 266 IVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
-|++||++|.+- ....+.|.+.|+.-+..+.+|-. +.++..+...|.++ -..+++.++..++-...++..+
T Consensus 119 KVvIIDEad~Lt---~~A~NALLK~LEEpp~~t~FIL~-----ttd~~kL~~tI~SR-c~~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 119 KIFIIDEVHMLT---KEAFNALLKTLEEPPSYVKFILA-----TTDPLKLPATILSR-TQHFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred EEEEEECcccCC---HHHHHHHHHHHhhcCCceEEEEE-----ECChhhCchHHHhh-ceeEEcCCCCHHHHHHHHHHHH
Confidence 599999999952 34555678888888877643332 12346777888887 4689999999988877777665
Q ss_pred HH
Q 007208 346 EE 347 (613)
Q Consensus 346 ~~ 347 (613)
..
T Consensus 190 ~~ 191 (535)
T PRK08451 190 EK 191 (535)
T ss_pred HH
Confidence 43
No 320
>PHA02244 ATPase-like protein
Probab=96.20 E-value=0.14 Score=56.00 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 103 ASQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 103 ~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
....|||.||+++++++||+|||+..+.+++.++
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3456999999999999999999999999999887
No 321
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.20 E-value=0.005 Score=71.60 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=38.2
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|.+|.|.++++..+.-.... ....||||.||||||||++|++|+.-+
T Consensus 2 pf~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 388999999998777544432 112479999999999999999999887
No 322
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.13 Score=59.57 Aligned_cols=75 Identities=11% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
...-||+|||+|.+ . ....+.|.+.|+.-+..+ +|+.+ ++...+...|.+++. .+++..++.++-..++
T Consensus 119 ~~~kVvIIDEa~~L-~--~~a~naLLk~LEepp~~tv~Il~t------~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L 188 (585)
T PRK14950 119 ARYKVYIIDEVHML-S--TAAFNALLKTLEEPPPHAIFILAT------TEVHKVPATILSRCQ-RFDFHRHSVADMAAHL 188 (585)
T ss_pred CCeEEEEEeChHhC-C--HHHHHHHHHHHhcCCCCeEEEEEe------CChhhhhHHHHhccc-eeeCCCCCHHHHHHHH
Confidence 34579999999985 2 234455667777776665 45543 233455566666654 6889999998888777
Q ss_pred HHHHHH
Q 007208 342 KSQLEE 347 (613)
Q Consensus 342 k~~L~~ 347 (613)
++.+.+
T Consensus 189 ~~~a~~ 194 (585)
T PRK14950 189 RKIAAA 194 (585)
T ss_pred HHHHHH
Confidence 766543
No 323
>PRK06547 hypothetical protein; Provisional
Probab=96.16 E-value=0.0036 Score=61.02 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=28.4
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
..+.-|++.||+|+|||++|+.+|..++++++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 34566888999999999999999999999888
No 324
>PHA02624 large T antigen; Provisional
Probab=96.12 E-value=0.0064 Score=69.56 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
+++..+.+||+||||||||++|.+|++.++-..+.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vls 461 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLN 461 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 45556789999999999999999999999555553
No 325
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.10 E-value=0.0066 Score=64.44 Aligned_cols=33 Identities=36% Similarity=0.426 Sum_probs=30.4
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.+...|.|.|+||||||++++.+|..+|++|+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 456678999999999999999999999999998
No 326
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.11 Score=59.84 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=54.3
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-|++|||++.+ +....+.|.+.++.-+..+++|.. +.+...+.+.|.+++. .+++.+|..++....++
T Consensus 118 ~~~KVvIIDEa~~L---s~~a~naLLK~LEepp~~~vfI~~-----tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~ 188 (563)
T PRK06647 118 SRYRVYIIDEVHML---SNSAFNALLKTIEEPPPYIVFIFA-----TTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLK 188 (563)
T ss_pred CCCEEEEEEChhhc---CHHHHHHHHHhhccCCCCEEEEEe-----cCChHHhHHHHHHhce-EEEecCCCHHHHHHHHH
Confidence 45679999999995 234556677778887777755543 2234677788888876 68999999999888887
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 189 ~i~~ 192 (563)
T PRK06647 189 KVCL 192 (563)
T ss_pred HHHH
Confidence 6653
No 327
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.08 E-value=0.026 Score=67.01 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=37.3
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.-+.|.+=++..+.|..++.--+ .+ -.+...++++||||||||++++.+..++
T Consensus 753 VPD~LPhREeEIeeLasfL~paI------kg--sgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGI------KQ--SGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHH------hc--CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34678888888888877765411 11 1222334699999999999999998765
No 328
>PRK09087 hypothetical protein; Validated
Probab=96.07 E-value=0.0035 Score=63.66 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=25.7
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+.|+||+|+|||+|+++++...++.++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i 73 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLI 73 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEe
Confidence 4899999999999999999999888777
No 329
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.15 Score=59.25 Aligned_cols=73 Identities=10% Similarity=0.143 Sum_probs=50.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHH
Q 007208 266 IVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
-|++|||+|.+ +......|.+.|+..+..+++|... .....+-+.|.++. ..+++.++.+++-...++..+
T Consensus 123 KVvIIdea~~L---s~~a~naLLK~LEepp~~tifIL~t-----t~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia 193 (614)
T PRK14971 123 KIYIIDEVHML---SQAAFNAFLKTLEEPPSYAIFILAT-----TEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVA 193 (614)
T ss_pred EEEEEECcccC---CHHHHHHHHHHHhCCCCCeEEEEEe-----CCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHH
Confidence 49999999996 3345567888888888776444431 12356777777776 448999999888777776655
Q ss_pred HH
Q 007208 346 EE 347 (613)
Q Consensus 346 ~~ 347 (613)
.+
T Consensus 194 ~~ 195 (614)
T PRK14971 194 SK 195 (614)
T ss_pred HH
Confidence 43
No 330
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.00 E-value=0.0036 Score=55.95 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=21.3
Q ss_pred eeeecCCCCCchhhhhhhHHhhC
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g 585 (613)
|+|.|+||+|||++|+.++...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~ 23 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG 23 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEECCCCCCHHHHHHHHHHHHC
Confidence 68999999999999999999973
No 331
>PLN02674 adenylate kinase
Probab=96.00 E-value=0.0048 Score=63.51 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=27.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
...|+|.||||+|||+.|+.||...|++.|
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 356999999999999999999999999988
No 332
>smart00350 MCM minichromosome maintenance proteins.
Probab=95.99 E-value=0.23 Score=56.37 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=88.4
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-------------hcCcEEEEe-eeeccCCCCcc-------ccchHhhcc
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-------------LLASVLILG-SRIVDLSNDQR-------EVDGRVTAL 322 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-------------l~g~VlIiG-S~~~ds~~~~~-------~v~~~l~~l 322 (613)
..-|+||||+|++ .. .....|.+.|+. ++.+..|++ +++....-+.. .+++.+.++
T Consensus 300 ~~Gil~iDEi~~l-~~--~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsR 376 (509)
T smart00350 300 DNGVCCIDEFDKM-DD--SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSR 376 (509)
T ss_pred CCCEEEEechhhC-CH--HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCc
Confidence 5569999999995 32 233334444542 223454444 44332211112 688999999
Q ss_pred CCc-eEEeCCCChHHHHHHHHHHHHHHHHH-----------hhhhhhhhHHHHHhhcCCCCchh----------hhhhcc
Q 007208 323 FPY-NIEIRPPEDENHLVSWKSQLEEDMKM-----------MQAKDNRNHIMEVLSANDLDCDD----------LDSINV 380 (613)
Q Consensus 323 F~~-~IeI~~P~ee~Rl~Ilk~~L~~d~k~-----------~~~~~N~~~I~~vL~~~dl~c~d----------La~l~~ 380 (613)
|+- .+....|+.+.+.+|.+..+...... ...+.-...|+.+-....-..++ ++..+.
T Consensus 377 FdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~ 456 (509)
T smart00350 377 FDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKE 456 (509)
T ss_pred eeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccc
Confidence 965 56668999999999998866432100 00011111222111100001111 011111
Q ss_pred -------cCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhhc
Q 007208 381 -------ADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQE 431 (613)
Q Consensus 381 -------~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~ 431 (613)
.....|.+.++.+|.-|..++.++..+ .++.+|+..|+++|++
T Consensus 457 ~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~--------~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 457 DSQSEARSSIPITVRQLESIIRLSEAHAKMRLSD--------VVEEADVEEAIRLLRE 506 (509)
T ss_pred ccccccccccCcCHHHHHHHHHHHHHHHHHcCCC--------ccCHHHHHHHHHHHHH
Confidence 124578888999999999988775543 3788999999998853
No 333
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.99 E-value=0.036 Score=51.80 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=21.9
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCeEEEe
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAKLLLL 135 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~LL~l 135 (613)
||||-|+++.++++||||||+..|..+--+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 689999999999999999999999987544
No 334
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.97 E-value=0.02 Score=58.93 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=62.9
Q ss_pred HHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHh
Q 007208 47 MEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAH 126 (613)
Q Consensus 47 ~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~ 126 (613)
++..+.+.-+++....-|||||-.. ++..+.++..+.- |+.+.....+.++|+||++.+++.|+.|+|+
T Consensus 53 ~~~~~~~s~i~~~~~~~tFdnf~~~-~~~q~~al~~a~~----------~~~~~~~~~~~~~l~G~~GtGKThLa~aia~ 121 (244)
T PRK07952 53 MQRTFNRSGIRPLHQNCSFENYRVE-CEGQMNALSKARQ----------YVEEFDGNIASFIFSGKPGTGKNHLAAAICN 121 (244)
T ss_pred HHHHHHHcCCCccccCCccccccCC-CchHHHHHHHHHH----------HHHhhccCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445677778888889999999655 3343434433332 2222222345799999999999999999999
Q ss_pred hh---CCeEEEeecccchhhhh
Q 007208 127 FF---EAKLLLLDVTDFSLKIQ 145 (613)
Q Consensus 127 ~f---~a~LL~lD~~d~~~~~~ 145 (613)
++ |.+.+.+++.+|...+.
T Consensus 122 ~l~~~g~~v~~it~~~l~~~l~ 143 (244)
T PRK07952 122 ELLLRGKSVLIITVADIMSAMK 143 (244)
T ss_pred HHHhcCCeEEEEEHHHHHHHHH
Confidence 99 78899999988876653
No 335
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.97 E-value=0.0081 Score=58.57 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+..+|||||||+|||++|+++|+.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34567999999999999999999999743
No 336
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.16 Score=59.15 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=47.7
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
.--||+|||+|.+ . ....+.|.+.|+.-++.+ +|+.+ .+..++...|.++. ..|++.++++++-...++
T Consensus 127 ~~KVvIIdEad~L-t--~~a~naLLK~LEePp~~tv~IL~t------~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~ 196 (620)
T PRK14954 127 RYRVYIIDEVHML-S--TAAFNAFLKTLEEPPPHAIFIFAT------TELHKIPATIASRC-QRFNFKRIPLDEIQSQLQ 196 (620)
T ss_pred CCEEEEEeChhhc-C--HHHHHHHHHHHhCCCCCeEEEEEe------CChhhhhHHHHhhc-eEEecCCCCHHHHHHHHH
Confidence 3469999999995 2 233456777788877765 44443 12355655665554 588999999887666666
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 197 ~i~~ 200 (620)
T PRK14954 197 MICR 200 (620)
T ss_pred HHHH
Confidence 5443
No 337
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.94 E-value=0.0058 Score=58.27 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=19.8
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
..++.++++||||+|||++.+++...+..+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345789999999999999999888776544
No 338
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.90 E-value=0.0035 Score=56.60 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=20.1
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.++++||||+|||++++.++.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999987
No 339
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.86 E-value=0.0079 Score=68.56 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=47.2
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHh-----------hCCceeec
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKR-----------LGQASLMS 591 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e-----------~g~~fi~~ 591 (613)
.+|++|.|.....+.+.+.+.. +. .....||++|++||||+++|++|-.. .+.||+..
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 3588899988888888877754 22 22357999999999999999999877 46789855
Q ss_pred cCC
Q 007208 592 PCL 594 (613)
Q Consensus 592 v~~ 594 (613)
.++
T Consensus 285 nCa 287 (538)
T PRK15424 285 NCG 287 (538)
T ss_pred ecc
Confidence 555
No 340
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.83 E-value=0.0088 Score=68.04 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=46.7
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
.++++|.|.....+.+.+.+.. +. .....|||+|++|||||++|++|.... +.||+...+.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~-------~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~ 256 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARV-------VA----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCA 256 (534)
T ss_pred CccCceEECCHHHHHHHHHHHH-------Hh----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecC
Confidence 4678888988888888777754 11 234569999999999999999999874 5688855544
No 341
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.014 Score=64.10 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=35.0
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
.-|||-||.+-+++.||+-||+-+.+++.+-|.+.++
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLT 263 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLT 263 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchh
Confidence 4599999999999999999999999999999999986
No 342
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.75 E-value=0.32 Score=56.46 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=52.9
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..-||+||++|.+ . ....+.|.+.|+.-++.+ +|+.+ ++.+++...|.++. ..+++..|++++-...++
T Consensus 132 ~~KVvIIDEad~L-s--~~a~naLLKtLEePp~~~~fIl~t------te~~kll~tI~SRc-q~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 132 RYKVYIIDEVHML-S--TAAFNALLKTLEEPPPHVKFIFAT------TEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLS 201 (598)
T ss_pred CcEEEEEEChHhC-C--HHHHHHHHHHHHhCCCCeEEEEEe------CChhhhhHHHHhhe-eEEEecCCCHHHHHHHHH
Confidence 3469999999995 2 344566778888888776 44443 23345666677776 479999999999888888
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..+..
T Consensus 202 ~i~~k 206 (598)
T PRK09111 202 RIAAK 206 (598)
T ss_pred HHHHH
Confidence 77654
No 343
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.72 E-value=0.0078 Score=69.49 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=27.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCceeecc
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASLMSP 592 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v 592 (613)
+=+||+||||-|||+||..||+++|..++-+.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEIN 358 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEIN 358 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEec
Confidence 34668999999999999999999999998433
No 344
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.69 E-value=0.056 Score=48.68 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEee
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGS 303 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS 303 (613)
+++.+.+.+... ...+|+|||+|.+. +..++..++.+.+...-.|+++|.
T Consensus 75 l~~~~~~~l~~~---~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 75 LRSLLIDALDRR---RVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp HHHHHHHHHHHC---TEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEES
T ss_pred HHHHHHHHHHhc---CCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEEC
Confidence 446666655555 44899999999954 567777777777744445678885
No 345
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.66 E-value=0.0059 Score=59.93 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.3
Q ss_pred eeeecCCCCCchhhhhhhHHhh
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 6789999999998777777665
No 346
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.63 E-value=0.013 Score=59.98 Aligned_cols=56 Identities=27% Similarity=0.504 Sum_probs=45.8
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+...+|.|.+.+++.|.+-. +.|... .|...|||+|..||||++++||+-++.+-
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT-------~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~e~~~ 111 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNT-------EQFAEG--LPANNVLLWGARGTGKSSLVKALLNEYAD 111 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHH-------HHHHcC--CcccceEEecCCCCChHHHHHHHHHHHHh
Confidence 578899999999999886554 345542 46678999999999999999999988743
No 347
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.62 E-value=0.1 Score=60.72 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=32.7
Q ss_pred CCCce-EeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 103 ASQAI-LLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 103 ~~~~I-LLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
.+++| ||||||++++++||.-.||+.|-+.+-++++|
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASD 361 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASD 361 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccc
Confidence 44445 56899999999999999999999999999987
No 348
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.60 E-value=0.0093 Score=55.93 Aligned_cols=30 Identities=30% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.+..-++|.|+.|+|||+++++++..+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 444568899999999999999999999865
No 349
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.28 Score=53.53 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=51.5
Q ss_pred cCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCc-EEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHH
Q 007208 262 KTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLAS-VLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVS 340 (613)
Q Consensus 262 ~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~-VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~I 340 (613)
...|-||+|||+|.+ +....+.|.+.++.-++. ++|+.++. +..+...+.++. ..|.+++|++++-.+.
T Consensus 139 ~~~~kVviIDead~m---~~~aanaLLK~LEepp~~~~~IL~t~~------~~~llpti~SRc-~~i~l~~l~~~~i~~~ 208 (365)
T PRK07471 139 EGGWRVVIVDTADEM---NANAANALLKVLEEPPARSLFLLVSHA------PARLLPTIRSRC-RKLRLRPLAPEDVIDA 208 (365)
T ss_pred cCCCEEEEEechHhc---CHHHHHHHHHHHhcCCCCeEEEEEECC------chhchHHhhccc-eEEECCCCCHHHHHHH
Confidence 368899999999985 345556677888887765 45554422 234445555553 5889999999998877
Q ss_pred HHHHH
Q 007208 341 WKSQL 345 (613)
Q Consensus 341 lk~~L 345 (613)
+..+.
T Consensus 209 L~~~~ 213 (365)
T PRK07471 209 LAAAG 213 (365)
T ss_pred HHHhc
Confidence 77653
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.54 E-value=0.0084 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred eeeecCCCCCchhhhhhhHHhh
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999984
No 351
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.54 E-value=0.015 Score=65.36 Aligned_cols=29 Identities=41% Similarity=0.587 Sum_probs=26.2
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+=+||.||+|||||+.++.+|+++|..++
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 34678999999999999999999998887
No 352
>PLN02459 probable adenylate kinase
Probab=95.51 E-value=0.011 Score=61.37 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=26.3
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
-++|.||||+|||++|+.+|...|++.|
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~i 58 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHI 58 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3888999999999999999999999988
No 353
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.46 E-value=0.013 Score=68.65 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=45.6
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
.+|+++.|.....+.+.+.+.. +. .....||++|++|||||++|++|...+ +.||+...+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~-------~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~ 436 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM-------VA----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 436 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH-------Hh----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecc
Confidence 4578899988888888777764 11 223469999999999999999998765 4688744433
No 354
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.40 E-value=0.015 Score=66.30 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=47.1
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
.+|++|.|.....+.+.+.+.. +. .....||++|++||||+++|++|.... +.||+...++
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~ 272 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCG 272 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccc
Confidence 5688999988888888877754 22 223579999999999999999998764 5689855554
No 355
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.52 Score=51.17 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhh-cCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceE
Q 007208 250 IQSIYRVLCYVS-KTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNI 327 (613)
Q Consensus 250 lqaL~evl~s~s-~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~I 327 (613)
++.|.+.+...+ ....-||+|||+|.+ . ....+.|.+.++.-+..+ +|+-+ +.+..+...++.+. ..+
T Consensus 126 iR~l~~~l~~~~~~g~~rVviIDeAd~l-~--~~aanaLLk~LEEpp~~~~fiLit------~~~~~llptIrSRc-~~i 195 (351)
T PRK09112 126 IRRVGHFLSQTSGDGNWRIVIIDPADDM-N--RNAANAILKTLEEPPARALFILIS------HSSGRLLPTIRSRC-QPI 195 (351)
T ss_pred HHHHHHHhhhccccCCceEEEEEchhhc-C--HHHHHHHHHHHhcCCCCceEEEEE------CChhhccHHHHhhc-cEE
Confidence 344555555433 356789999999996 2 233445777778876654 34433 12345557777777 599
Q ss_pred EeCCCChHHHHHHHHH
Q 007208 328 EIRPPEDENHLVSWKS 343 (613)
Q Consensus 328 eI~~P~ee~Rl~Ilk~ 343 (613)
.+++|++++-.++++.
T Consensus 196 ~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 196 SLKPLDDDELKKALSH 211 (351)
T ss_pred EecCCCHHHHHHHHHH
Confidence 9999999998877765
No 356
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.39 E-value=0.0075 Score=61.20 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.4
Q ss_pred CCceeeecCCCCCchhhhhhhHH
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
+.-+|+||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45599999999999999999974
No 357
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.21 Score=52.62 Aligned_cols=132 Identities=11% Similarity=0.167 Sum_probs=76.9
Q ss_pred EEEEEccchhhhhhhhH-HHHHHHHHHHhhcCcE-EEEeeeec--------------cCCCCccccchHhhccCCceEEe
Q 007208 266 IVVYLRDVDKLIFKSQR-TYNLFQKMMKKLLASV-LILGSRIV--------------DLSNDQREVDGRVTALFPYNIEI 329 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r-~~~~l~~~l~~l~g~V-lIiGS~~~--------------ds~~~~~~v~~~l~~lF~~~IeI 329 (613)
-|||||+|..+-..-.+ +|. .++.+ .+ ++||.-.. .++-+.-.+.+-++.+|.....+
T Consensus 105 DVLFIDEIHrl~~~vEE~LYp----aMEDf--~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rl 178 (332)
T COG2255 105 DVLFIDEIHRLSPAVEEVLYP----AMEDF--RLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRL 178 (332)
T ss_pred CeEEEehhhhcChhHHHHhhh----hhhhe--eEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeee
Confidence 68999999995333334 333 33332 12 23332110 11223455677789999998888
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCch-----hhhhhcccCcccchhhHHHHHHHHHHhhhhc
Q 007208 330 RPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCD-----DLDSINVADTMVLGNYIEEIVVSAVSYHLMN 404 (613)
Q Consensus 330 ~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~-----dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~ 404 (613)
.-=+.++-.+|.+.- .... +++++ +++..+.+ |++=...++.+-.-++..+
T Consensus 179 efY~~~eL~~Iv~r~----a~~l----------------~i~i~~~~a~eIA~rSRG----TPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 179 EFYTVEELEEIVKRS----AKIL----------------GIEIDEEAALEIARRSRG----TPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred ecCCHHHHHHHHHHH----HHHh----------------CCCCChHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHh
Confidence 888888887777642 1111 22222 23333333 6666677777777676532
Q ss_pred CCCcccCCCceeechhhHHhhhhhhhccccC
Q 007208 405 NEDTDYRNGKLIISSKSLSHGLSIFQEGKAS 435 (613)
Q Consensus 405 ~~~~~~~~~~l~is~~sl~~al~~~q~~~~~ 435 (613)
+.-.|+.+--.+||.+++-...+
T Consensus 235 --------~~~~I~~~ia~~aL~~L~Vd~~G 257 (332)
T COG2255 235 --------GDGDIDRDIADKALKMLDVDELG 257 (332)
T ss_pred --------cCCcccHHHHHHHHHHhCccccc
Confidence 34458888889999988754433
No 358
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.028 Score=61.25 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=35.9
Q ss_pred ccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 528 IGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 528 IgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
+-+-+++++.+...+.- .+. +-. |..+++|||||||||.+++.++.++.-+
T Consensus 19 l~~Re~ei~~l~~~l~~------~~~--~~~-p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 19 LPHREEEINQLASFLAP------ALR--GER-PSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccccHHHHHHHHHHHHH------Hhc--CCC-CccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 55557777777766433 222 223 3459999999999999999999987544
No 359
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.37 E-value=0.022 Score=54.81 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 530 ALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 530 Gl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
|.+++.+.|...+.. + +.+..+||+||+|+||+.+|.++|..+-
T Consensus 1 gq~~~~~~L~~~~~~-----------~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------G-RLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------T-C--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHc-----------C-CcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 567777888777654 2 4567899999999999999999998863
No 360
>PF13245 AAA_19: Part of AAA domain
Probab=95.34 E-value=0.011 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=15.9
Q ss_pred eeeecCCCCCch-hhhhhhHHhh
Q 007208 563 ILLFGPPGLGKQ-CWPRPLPKRL 584 (613)
Q Consensus 563 iLL~GPPGtGKT-~lAkAiA~e~ 584 (613)
+++.|||||||| +++..++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 445999999999 5555555554
No 361
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.33 E-value=0.017 Score=61.87 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=42.8
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
++++.|-....+.+.+.+.. .. .....||+.|++||||+++|++|.... +.||+...+.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~-------~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~ 66 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSR-------LA----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (326)
T ss_pred cCccEECCHHHHHHHHHHHH-------Hh----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCC
Confidence 56777777777777776654 11 224569999999999999999998665 3688854444
No 362
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.22 E-value=0.014 Score=64.27 Aligned_cols=45 Identities=33% Similarity=0.641 Sum_probs=38.1
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+++.+|.+.-+.+++.|.+. ..|||+.||||.|||++|+|+|.-+
T Consensus 243 k~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 67888988888888877642 4799999999999999999999765
No 363
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.20 E-value=0.2 Score=53.87 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=51.9
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
...-|++||+.|++ +....+.|.+.|++-++.+ +|+. ++++..+...|+.|... +.+++|.+++-.+.+
T Consensus 105 ~~~kv~iI~~a~~m---~~~aaNaLLK~LEEPp~~~~fiL~------t~~~~~ll~TI~SRc~~-~~~~~~~~~~~~~~L 174 (328)
T PRK05707 105 GGRKVVLIEPAEAM---NRNAANALLKSLEEPSGDTVLLLI------SHQPSRLLPTIKSRCQQ-QACPLPSNEESLQWL 174 (328)
T ss_pred CCCeEEEECChhhC---CHHHHHHHHHHHhCCCCCeEEEEE------ECChhhCcHHHHhhcee-eeCCCcCHHHHHHHH
Confidence 45678889999995 2345666778888877766 4444 33456677777777665 899999999887777
Q ss_pred HHH
Q 007208 342 KSQ 344 (613)
Q Consensus 342 k~~ 344 (613)
+.+
T Consensus 175 ~~~ 177 (328)
T PRK05707 175 QQA 177 (328)
T ss_pred HHh
Confidence 654
No 364
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.20 E-value=0.019 Score=66.80 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=45.4
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC---CceeeccCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG---QASLMSPCL 594 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g---~~fi~~v~~ 594 (613)
..+|+++.|-....+.+.+.+.. +. .....|||+|++||||+++|++|...+. .||+...++
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~-------~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~ 385 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQ-------AA----KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQ 385 (638)
T ss_pred cccccceEECCHHHHHHHHHHHH-------Hh----CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECC
Confidence 34688888888777777666544 11 2234599999999999999999988753 688854444
No 365
>PRK06696 uridine kinase; Validated
Probab=95.16 E-value=0.027 Score=56.70 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=25.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
+.=|.+.|+||+|||++|+.||..+ |.+++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~ 54 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVI 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4457789999999999999999998 66665
No 366
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.15 E-value=0.012 Score=65.86 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=22.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+++||||+|||||+|++|+++++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l 165 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI 165 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH
Confidence 3569999999999999999999965
No 367
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.12 E-value=0.013 Score=56.36 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.4
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.++.-|+|.|+||+|||++|++++..+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3455688999999999999999999886
No 368
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.08 E-value=0.017 Score=66.63 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=22.2
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..++|||++|||||+|+.|||+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a 338 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA 338 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999987
No 369
>PLN02199 shikimate kinase
Probab=95.05 E-value=0.017 Score=61.15 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=28.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+.|+|.|++|||||++++.+|..+|++||
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fI 131 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFF 131 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457999999999999999999999999999
No 370
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.39 Score=50.11 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.9
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCe
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAK 131 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~ 131 (613)
.+||+||++++++.+|.+||+++...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 69999999999999999999998754
No 371
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.45 Score=51.97 Aligned_cols=93 Identities=25% Similarity=0.310 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhH-HHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhc-cCCce
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQR-TYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTA-LFPYN 326 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r-~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~-lF~~~ 326 (613)
.++.|++.+.. ...++||.|||+|.++..+++ +|+++. .-+.....|.|+|...-. +-.+.+++++.. +=+.+
T Consensus 110 ~~~~l~~~~~~--~~~~~IvvLDEid~L~~~~~~~LY~L~r-~~~~~~~~v~vi~i~n~~--~~~~~ld~rv~s~l~~~~ 184 (366)
T COG1474 110 ILKRLYDNLSK--KGKTVIVILDEVDALVDKDGEVLYSLLR-APGENKVKVSIIAVSNDD--KFLDYLDPRVKSSLGPSE 184 (366)
T ss_pred HHHHHHHHHHh--cCCeEEEEEcchhhhccccchHHHHHHh-hccccceeEEEEEEeccH--HHHHHhhhhhhhccCcce
Confidence 55666666555 468999999999998887754 343322 223334456777752211 012456777765 55677
Q ss_pred EEeCCCChHHHHHHHHHHHH
Q 007208 327 IEIRPPEDENHLVSWKSQLE 346 (613)
Q Consensus 327 IeI~~P~ee~Rl~Ilk~~L~ 346 (613)
|.++|=+.+|-..|++...+
T Consensus 185 I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 185 IVFPPYTAEELYDILRERVE 204 (366)
T ss_pred eeeCCCCHHHHHHHHHHHHH
Confidence 88999999999999886653
No 372
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.00 E-value=0.014 Score=54.10 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.1
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
...||++|+|||||+++|++|....+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 356999999999999999999988763
No 373
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.99 E-value=0.019 Score=56.74 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+.+-++++||||||||++|..+|.+.
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 577777889999999999999999888654
No 374
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.92 E-value=0.021 Score=56.89 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+.+-++++||||+|||++|..+|.+.
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 477777779999999999999999998775
No 375
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=94.90 E-value=0.016 Score=61.41 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=37.6
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
-..+|+.+..++...+.+.... . .. ...|+|||||||||....|.|..+-.
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~----------~--~l-Ph~L~YgPPGtGktsti~a~a~~ly~ 88 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGM----------P--GL-PHLLFYGPPGTGKTSTILANARDFYS 88 (360)
T ss_pred chhhhHhcCCchhhHHHHhccC----------C--CC-CcccccCCCCCCCCCchhhhhhhhcC
Confidence 3456777778887777766332 1 11 27899999999999999999988654
No 376
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.84 E-value=0.034 Score=60.50 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=26.4
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
...+++|+.||||+|+|||+|.-..-..+..
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 3467999999999999999999988777654
No 377
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.82 E-value=0.029 Score=63.65 Aligned_cols=59 Identities=14% Similarity=0.248 Sum_probs=43.8
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
+++|.|.....+.+.+.+.. +. .....|||+|++|||||++|++|.... +.||+...+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~-------~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~ 247 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEV-------VA----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCA 247 (509)
T ss_pred CCceeecCHHHHHHHHHHHH-------Hh----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcc
Confidence 45677777777777777654 11 224579999999999999999999874 4688854444
No 378
>PHA02774 E1; Provisional
Probab=94.76 E-value=0.022 Score=65.06 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=27.0
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++..+.++|+||||||||++|-+|++.++-.++
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi 463 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVI 463 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 333468999999999999999999999864443
No 379
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.69 E-value=0.025 Score=59.63 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhC--CceeeccCCCcc----hHHHHHHHHHHHHh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLG--QASLMSPCLPSL----PNGLVRMRRMFELY 611 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g--~~fi~~v~~~~l----ge~e~~Ir~IF~~A 611 (613)
..+.+|+.|+||||||.+|-.+|+.+| .||. .+.+.++ +++-..+.+.|.++
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~-~i~gSEI~SlEmsKTEAltQAfRks 122 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFT-SISGSEIYSLEMSKTEALTQAFRKS 122 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCcee-eeecceeeeecccHHHHHHHHHHHh
Confidence 457899999999999999999999998 5777 4555443 24445777777764
No 380
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.68 E-value=0.031 Score=63.58 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=44.0
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
..+|+++.|-....+.+.+.+.. +.. ....|||+|++||||+++|+++.... +.||+...+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca 264 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAM----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCA 264 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhC----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccc
Confidence 46788998888776666665543 111 23459999999999999999987654 3678854444
No 381
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.67 E-value=0.023 Score=53.69 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=23.3
Q ss_pred eeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
+++.|+||+|||++|+.++..+ +.+.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~ 31 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVY 31 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 6789999999999999999998 65543
No 382
>PRK12377 putative replication protein; Provisional
Probab=94.66 E-value=0.07 Score=55.15 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=60.8
Q ss_pred HHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHH
Q 007208 46 KMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALA 125 (613)
Q Consensus 46 ~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA 125 (613)
+++..+.+.-++++--+.||+||-.. .+..+.+ ...|.. |+.++......++|+||++.+++.||.|+|
T Consensus 54 ~~~~~~~~s~i~~~~~~~tFdnf~~~-~~~~~~a-~~~a~~---------~a~~~~~~~~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 54 RVEKILNRSGIQPLHRKCSFANYQVQ-NDGQRYA-LSQAKS---------IADELMTGCTNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred HHHHHHHHcCCCcccccCCcCCcccC-ChhHHHH-HHHHHH---------HHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 44445677778999999999999533 2333333 333332 222222334679999999999999999999
Q ss_pred hhh---CCeEEEeecccchhhhh
Q 007208 126 HFF---EAKLLLLDVTDFSLKIQ 145 (613)
Q Consensus 126 ~~f---~a~LL~lD~~d~~~~~~ 145 (613)
+++ |...+.+...++...+.
T Consensus 123 ~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 123 NRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred HHHHHcCCCeEEEEHHHHHHHHH
Confidence 998 56677777777776553
No 383
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=94.66 E-value=0.022 Score=64.53 Aligned_cols=44 Identities=32% Similarity=0.510 Sum_probs=34.5
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHH
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
.|+||.|...+++.+.-.+ .....++|+||||||||++|++++.
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ 233 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQG 233 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhc
Confidence 6889999888876654322 2224699999999999999999986
No 384
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.65 E-value=0.021 Score=54.89 Aligned_cols=31 Identities=29% Similarity=0.526 Sum_probs=27.6
Q ss_pred CCC-ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 559 PCR-GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 559 ~~~-giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
|.+ .+++.|+.|||||+++++++.+++++|+
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~ 41 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFI 41 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccc
Confidence 444 4677899999999999999999999998
No 385
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.63 E-value=0.018 Score=58.74 Aligned_cols=24 Identities=46% Similarity=0.509 Sum_probs=21.8
Q ss_pred ceeeecCCCCCchhhhhhhHHhhC
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
-++|+||||+|||++++.++.++.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 378899999999999999999875
No 386
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=94.61 E-value=0.034 Score=69.06 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=42.6
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCce
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQAS 588 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~f 588 (613)
..++++.|+++..+.+.+.+.. .....+-+-++||+|+|||++|+++++.....|
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 3477899999999888877643 223345678999999999999999988875443
No 387
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.42 Score=50.62 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
..--|++|+|+|.+ +....+.|.+.|++-++++ +|+.+ ++++.+...|.++- ..+++.+|++++-...+
T Consensus 92 ~~~kv~iI~~ad~m---~~~a~naLLK~LEepp~~t~~il~~------~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 92 GDKKVIIIYNSEKM---TEQAQNAFLKTIEEPPKGVFIILLC------ENLEQILDTIKSRC-QIYKLNRLSKEEIEKFI 161 (313)
T ss_pred CCceEEEEechhhc---CHHHHHHHHHHhcCCCCCeEEEEEe------CChHhCcHHHHhhc-eeeeCCCcCHHHHHHHH
Confidence 45569999999995 3345667888888877665 55554 22356666776665 48999999988876555
Q ss_pred HH
Q 007208 342 KS 343 (613)
Q Consensus 342 k~ 343 (613)
+.
T Consensus 162 ~~ 163 (313)
T PRK05564 162 SY 163 (313)
T ss_pred HH
Confidence 43
No 388
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.59 E-value=0.022 Score=56.83 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=25.6
Q ss_pred ChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 548 RPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 548 ~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
+|..|..- ..++-++|.||||+|||+++++++..
T Consensus 3 ~~~~~~~~--~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 3 NPWLFNKP--AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CccccCCC--CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45555532 34566889999999999999999754
No 389
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.54 E-value=0.038 Score=59.27 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=28.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC---CceeeccCC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG---QASLMSPCL 594 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g---~~fi~~v~~ 594 (613)
...|||.|++||||+++|++|..... .||+...++
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~ 59 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCA 59 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCC
Confidence 45699999999999999999986653 688855554
No 390
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=94.48 E-value=0.043 Score=61.94 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=51.0
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCLP 595 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~~ 595 (613)
..+|++|.|-......+.+.+.. .......||+.|.+||||.++|++|-+.+ +-|||+..|+.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 57899999988888777776654 23456789999999999999999999886 57999777763
No 391
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.42 E-value=0.048 Score=56.73 Aligned_cols=48 Identities=27% Similarity=0.354 Sum_probs=36.9
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCc-eeeecCCCCCchhhhhhhHHhhC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRG-ILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~g-iLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+++++|-.+++.+.|++++.. .+| +++.||+|+|||++.+++..+..
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 5678888777777777665533 234 78999999999999999877764
No 392
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.40 E-value=0.025 Score=58.56 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.0
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+..-+|++||||||||++|..+|.+
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 57788888999999999999999887664
No 393
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.36 E-value=0.033 Score=56.62 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+...+|++||||||||++|..++.+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 58888889999999999999999866544
No 394
>smart00350 MCM minichromosome maintenance proteins.
Probab=94.35 E-value=0.051 Score=61.69 Aligned_cols=58 Identities=26% Similarity=0.297 Sum_probs=36.8
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.|.|.+.+|..|.-.+.-.. .+..-.+..+.-...|||+|+||||||++|+++++.+.
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~-~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~ 261 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV-HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAP 261 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC-ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcC
Confidence 56788888877755443311 11111111122223599999999999999999998764
No 395
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.32 E-value=0.036 Score=55.54 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+....-++++||||+|||++|..+|.+.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 577777778999999999999999998754
No 396
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.32 E-value=0.51 Score=48.73 Aligned_cols=81 Identities=11% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHh----hcCcEEEEeeeecc---------------CCCCccccchH--hhc
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKK----LLASVLILGSRIVD---------------LSNDQREVDGR--VTA 321 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~----l~g~VlIiGS~~~d---------------s~~~~~~v~~~--l~~ 321 (613)
.+..|||.||+. +..-...|..|+..|+. -|.+|||-++.+.. ..+..+.+.+. ++.
T Consensus 138 ~~kFIlFcDDLS--Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSD 215 (287)
T COG2607 138 PEKFILFCDDLS--FEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSD 215 (287)
T ss_pred CceEEEEecCCC--CCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhh
Confidence 578999999974 23335678889999874 56789988865531 01122233444 467
Q ss_pred cCCceEEeCCCChHHHHHHHHHHH
Q 007208 322 LFPYNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 322 lF~~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
+|.--+...+|+++.=+.|...+.
T Consensus 216 RFGLwL~F~~~~Q~~YL~~V~~~a 239 (287)
T COG2607 216 RFGLWLSFYPCDQDEYLKIVDHYA 239 (287)
T ss_pred hcceeecccCCCHHHHHHHHHHHH
Confidence 999999999999999998887764
No 397
>PF13173 AAA_14: AAA domain
Probab=94.16 E-value=0.3 Score=44.70 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=28.5
Q ss_pred CceEeecchhHHHHHHHHHHHhhhC--CeEEEeecccc
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFE--AKLLLLDVTDF 140 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~--a~LL~lD~~d~ 140 (613)
+-++|.||..+++++|+|.+|+++- -+.+.+|-.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 5578899999999999999999987 55555554443
No 398
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=94.16 E-value=0.038 Score=56.47 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=29.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP 595 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~ 595 (613)
..|..++||+|||||.+++++|..+|.+++...+++
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~ 67 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSE 67 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccc
Confidence 467789999999999999999999999998555554
No 399
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.14 E-value=0.037 Score=55.52 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+..-++++||||||||++|..++.+
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence 47777788999999999999999877653
No 400
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.07 E-value=0.027 Score=58.11 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=38.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
..++++++-.....+.+.+++.. .+.....+++.||+|+|||++.+++..+..-.
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~-----------~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRS-----------AVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHH-----------CHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cccHhhccCchhhHHHHHHHHhh-----------ccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 55778887666666666666554 12234579999999999999999999886544
No 401
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.06 E-value=0.061 Score=51.83 Aligned_cols=51 Identities=29% Similarity=0.335 Sum_probs=32.8
Q ss_pred ceeeecCCCCCchhhhhhhHHhh---CCceee-------ccCCCcchHH----HHHHHHHHHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL---GQASLM-------SPCLPSLPNG----LVRMRRMFELYS 612 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~---g~~fi~-------~v~~~~lge~----e~~Ir~IF~~A~ 612 (613)
-|.|.|.||+|||++|+++...+ |.+.+. ......++.+ ..++|++.+.|+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ 68 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAK 68 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999886 455541 1233334322 347777766553
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.06 E-value=0.13 Score=57.48 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+|.-++|+||||+|||++|..+|..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 346779999999999999999998766
No 403
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.99 E-value=0.04 Score=58.40 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=27.4
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.|.-|++.||+|||||++|+.+|..+|.+.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~v 121 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSV 121 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3556999999999999999999999998854
No 404
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.55 Score=54.85 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhhh--HHHHHHHHHHH-----hhc----------CcEEEEeeeeccCCCC
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQ--RTYNLFQKMMK-----KLL----------ASVLILGSRIVDLSND 311 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~--r~~~~l~~~l~-----~l~----------g~VlIiGS~~~ds~~~ 311 (613)
.+|.+-+ +-...|+ ++||+||+ +..+. +..+.|.+.|| .+. +.|+++++ .|.
T Consensus 407 IiQ~mkk----a~~~NPv-~LLDEIDK-m~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT-----ANs 475 (782)
T COG0466 407 IIQGMKK----AGVKNPV-FLLDEIDK-MGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT-----ANS 475 (782)
T ss_pred HHHHHHH----hCCcCCe-EEeechhh-ccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee-----cCc
Confidence 5566655 4445665 56899999 45443 35666667775 121 46887775 555
Q ss_pred ccccchHhhccCCceEEeCCCChHHHHHHHHHHH
Q 007208 312 QREVDGRVTALFPYNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 312 ~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
.+.++.-+..|+. .|+|.-=.+++-++|=|.+|
T Consensus 476 l~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 476 LDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cccCChHHhccee-eeeecCCChHHHHHHHHHhc
Confidence 6678888888876 57888888999999999886
No 405
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.96 E-value=0.047 Score=55.13 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=25.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+....-++++||||||||++|..++.+
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 47788888999999999999999999765
No 406
>PRK10536 hypothetical protein; Provisional
Probab=93.94 E-value=0.032 Score=57.93 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.1
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
-+++.||+|||||+||.|+|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999985
No 407
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=93.94 E-value=0.05 Score=59.81 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=46.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHh----hCCceeeccCCC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKR----LGQASLMSPCLP 595 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e----~g~~fi~~v~~~ 595 (613)
...++++.|-....+.+.|.+.. |. .....||++|++||||+++|++|... .+.|||+..|+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHH
Confidence 34577888888887788877765 22 22356999999999999999988754 356899666664
No 408
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.88 E-value=0.069 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.6
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...+-|.++|++|+|||+||+.++..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 34556889999999999999999987
No 409
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.88 E-value=0.047 Score=54.78 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=25.4
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-+.++||||||||++|..+|...
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 467777778999999999999999998553
No 410
>PF13173 AAA_14: AAA domain
Probab=93.87 E-value=0.04 Score=50.48 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=22.3
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+-++++||.|||||++++.++....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578999999999999999998865
No 411
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.84 E-value=1.5 Score=46.82 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhc-CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEe
Q 007208 251 QSIYRVLCYVSK-TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEI 329 (613)
Q Consensus 251 qaL~evl~s~s~-~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI 329 (613)
+.|.+.++..+- ..--|++||+.|.+ +....+.|.+.|+.-+..++|+-++ ++..+-+.|.+|- ..|++
T Consensus 110 r~i~~~l~~~p~~~~~kVvII~~ae~m---~~~aaNaLLK~LEEPp~~~fILi~~------~~~~Ll~TI~SRc-q~i~f 179 (314)
T PRK07399 110 REIKRFLSRPPLEAPRKVVVIEDAETM---NEAAANALLKTLEEPGNGTLILIAP------SPESLLPTIVSRC-QIIPF 179 (314)
T ss_pred HHHHHHHccCcccCCceEEEEEchhhc---CHHHHHHHHHHHhCCCCCeEEEEEC------ChHhCcHHHHhhc-eEEec
Confidence 344444433322 45689999999996 3446667888888888556665532 3456666777664 78999
Q ss_pred CCCChHHHHHHHHHHH
Q 007208 330 RPPEDENHLVSWKSQL 345 (613)
Q Consensus 330 ~~P~ee~Rl~Ilk~~L 345 (613)
++|++++-.+.++...
T Consensus 180 ~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 180 YRLSDEQLEQVLKRLG 195 (314)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999988887653
No 412
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.81 E-value=0.036 Score=55.55 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=26.9
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh----CCcee
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL----GQASL 589 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~----g~~fi 589 (613)
.|+.+..-+|+.||||||||.+|..++.+. |-+.+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vl 52 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVL 52 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EE
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEE
Confidence 578888889999999999999988766443 66654
No 413
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.63 E-value=0.042 Score=58.97 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=25.5
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+.++||+||+|+|||++|+++|+.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 44678999999999999999999998754
No 414
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.63 E-value=0.054 Score=55.11 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=22.6
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
++.+..-++++||||||||++|..++..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5666777999999999999998655543
No 415
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.61 E-value=0.086 Score=59.60 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=39.0
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCc-eeeecCCCCCchhhhhhhHHhhC
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRG-ILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~g-iLL~GPPGtGKT~lAkAiA~e~g 585 (613)
...+++++|-.+++.+.++.++.. +.| +|+.||+|+|||++.+++..+..
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 346788998888888887776543 355 67899999999999998777654
No 416
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.60 E-value=0.081 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.6
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++-++|.||||+|||+++..+|..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 345678899999999999988888765
No 417
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.52 E-value=0.05 Score=47.92 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=21.3
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
++++++||+|+|||.++.+.+.+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999998888887764
No 418
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.48 E-value=0.036 Score=57.97 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=21.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+.+||.||+|||||++++..-..+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CCcEEEECCCCCchhHHHHhhhccC
Confidence 4679999999999999998766554
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.46 E-value=0.086 Score=56.41 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.3
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+.-++|.||+|+|||++++.+|..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35668899999999999999998775
No 420
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.3 Score=58.64 Aligned_cols=100 Identities=30% Similarity=0.476 Sum_probs=0.0
Q ss_pred eEeecchhHHHHHHHHHHHhhh---CCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCccccccccc
Q 007208 107 ILLSGPAELYQQMLAKALAHFF---EAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKE 183 (613)
Q Consensus 107 ILLsGP~e~yqe~LaKALA~~f---~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~ 183 (613)
.|++||...+++.||||||.++ +-.++-||.+.|. | ||.++|+-.-+--.+
T Consensus 594 flflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~-------------------------e-vskligsp~gyvG~e 647 (898)
T KOG1051|consen 594 FLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQ-------------------------E-VSKLIGSPPGYVGKE 647 (898)
T ss_pred EEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhh-------------------------h-hhhccCCCcccccch
Q ss_pred ccccccccCCCCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcC
Q 007208 184 ETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKT 263 (613)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~ 263 (613)
+. .-+.++-+.
T Consensus 648 ~g---------------------------------------------------------------------g~Lteavrr 658 (898)
T KOG1051|consen 648 EG---------------------------------------------------------------------GQLTEAVKR 658 (898)
T ss_pred hH---------------------------------------------------------------------HHHHHHHhc
Q ss_pred CC-EEEEEccchhhhhhhhHHHHHHHHHHH------------hhcCcEEEEeee
Q 007208 264 SP-IVVYLRDVDKLIFKSQRTYNLFQKMMK------------KLLASVLILGSR 304 (613)
Q Consensus 264 ~P-~IL~idDiD~~l~~s~r~~~~l~~~l~------------~l~g~VlIiGS~ 304 (613)
.| +||+|||||+ .-..+...|..+++ .+...|+|+.|+
T Consensus 659 rP~sVVLfdeIEk---Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn 709 (898)
T KOG1051|consen 659 RPYSVVLFEEIEK---AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSN 709 (898)
T ss_pred CCceEEEEechhh---cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecc
No 421
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.42 E-value=0.061 Score=55.30 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=27.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
.|+...+-+|++|+||||||.++..++.+. |-|++
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vl 55 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVL 55 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEE
Confidence 467777889999999999999988777553 45554
No 422
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.40 E-value=0.054 Score=59.71 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=27.3
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+-|.+.|++|||||+|+++||..+|.+.+
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 467999999999999999999999998865
No 423
>PRK04328 hypothetical protein; Provisional
Probab=93.36 E-value=0.066 Score=55.06 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+...+|++||||||||.+|..++.+
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 47777788999999999999998866544
No 424
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.36 E-value=0.33 Score=55.38 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=48.4
Q ss_pred CCCEEEEEccchhhhhhh-hHHHHHHHHHHHhhcC-cEEEEeee--eccCCCCcc--------ccchHh-hccCCceEEe
Q 007208 263 TSPIVVYLRDVDKLIFKS-QRTYNLFQKMMKKLLA-SVLILGSR--IVDLSNDQR--------EVDGRV-TALFPYNIEI 329 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s-~r~~~~l~~~l~~l~g-~VlIiGS~--~~ds~~~~~--------~v~~~l-~~lF~~~IeI 329 (613)
..+.||+|+|+=..+... .+|...|+..+..-.. ++|||-|- .....+... -++..+ .+.--.+|.+
T Consensus 131 ~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 131 SNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF 210 (519)
T ss_pred CCceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence 578899999998866554 3566666666665445 88777762 222111111 123333 2344556777
Q ss_pred CCCChHHHHHHHHHHHH
Q 007208 330 RPPEDENHLVSWKSQLE 346 (613)
Q Consensus 330 ~~P~ee~Rl~Ilk~~L~ 346 (613)
.|=...--..-|+..+.
T Consensus 211 NpIa~T~mkKaL~rI~~ 227 (519)
T PF03215_consen 211 NPIAPTFMKKALKRILK 227 (519)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 77776666555554443
No 425
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.33 E-value=0.049 Score=58.40 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+.+.++||+||+|+|||++|+++|..+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 4567899999999999999999999864
No 426
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.33 E-value=0.071 Score=53.15 Aligned_cols=30 Identities=27% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-+.++||||+|||.+|..+|...
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 467777778899999999999999988764
No 427
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.32 E-value=0.087 Score=55.25 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.2
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++-++|.||+|+|||+++..+|..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998765
No 428
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.32 E-value=0.1 Score=56.36 Aligned_cols=51 Identities=29% Similarity=0.333 Sum_probs=38.1
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCC-CceeeecCCCCCchhhhhhhHHhhC
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPC-RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~-~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
++-|+++.++.|.+.+.. .-. +.... +=++|.||+|+|||++++.+-+-+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~------AA~--g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKS------AAQ--GLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccCcHHHHHHHHHHHHH------HHh--ccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 788999999988876654 112 22333 3466899999999999999988764
No 429
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.26 E-value=0.05 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
....+++.||+|+|||+++++++...
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34678999999999999999999765
No 430
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.22 E-value=0.043 Score=50.83 Aligned_cols=30 Identities=43% Similarity=0.583 Sum_probs=24.4
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
++..-|+|+|+=|+|||+++|++|..+|..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 344568999999999999999999999876
No 431
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.22 E-value=0.11 Score=59.76 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=44.2
Q ss_pred CCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHH
Q 007208 503 PDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 503 ~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
+-.++.++++.+..+|.. -.-.++-+.|.+.. |..++ .+.-|+|.|+||+|||++|+++|.
T Consensus 354 sgt~ir~~l~~G~~pP~~--------f~rpeV~~iL~~~~------~~r~~-----~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 354 SGTELRRRLREGLEIPEW--------FSFPEVVAELRRTY------PPRHK-----QGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred CHHHHHHHHHCCCCCChh--------hcHHHHHHHHHHHh------ccccC-----CCeEEEEECCCCChHHHHHHHHHH
Confidence 456778888888876532 12245555554432 22222 223588899999999999999999
Q ss_pred hhCC
Q 007208 583 RLGQ 586 (613)
Q Consensus 583 e~g~ 586 (613)
.++.
T Consensus 415 ~L~~ 418 (568)
T PRK05537 415 KLME 418 (568)
T ss_pred Hhhh
Confidence 9985
No 432
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.21 E-value=0.06 Score=57.67 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=24.8
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+.+-+++|||||||||+||-.++.+.
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 477777789999999999999988766554
No 433
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.18 E-value=0.062 Score=57.57 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=27.1
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.|.|.|+||||||+|+++++...+.+++
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 46899999999999999999999999887
No 434
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.16 E-value=0.061 Score=50.22 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.7
Q ss_pred eeeecCCCCCchhhhhhhHHhhCCc
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
+.+.||+|+|||++++.++......
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5789999999999999999986543
No 435
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.09 E-value=0.073 Score=52.16 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=23.1
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...++++||.|+|||++++.+....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 4679999999999999999999988
No 436
>PLN02165 adenylate isopentenyltransferase
Probab=93.06 E-value=0.07 Score=57.39 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=26.0
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-+.|.||+|+|||++|..||..++..++
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eII 72 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEII 72 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCcee
Confidence 34789999999999999999999987776
No 437
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.00 E-value=0.12 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..-++|.||+|+|||+++..+|..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999764
No 438
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.95 E-value=0.17 Score=57.13 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=60.5
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCC-ccc---cchHhhccCCceEEeCCCChHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSND-QRE---VDGRVTALFPYNIEIRPPEDENHLV 339 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~-~~~---v~~~l~~lF~~~IeI~~P~ee~Rl~ 339 (613)
.|.+|+|||-=.=| .-+.+..|.+.|.+...+.+||++|.||.-+. ++. +.+.-...|.-.++.-++.-.++.
T Consensus 239 kP~LLLLDEPtnhL--DleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~- 315 (614)
T KOG0927|consen 239 KPDLLLLDEPTNHL--DLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELE- 315 (614)
T ss_pred CCCEEEecCCccCC--CHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhHHHHHh-
Confidence 89999999843311 12566778888888877789999998875432 111 112222345555555555544444
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhh
Q 007208 340 SWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLD 376 (613)
Q Consensus 340 Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa 376 (613)
..|+.+-++ .+.-++|+......-+..|+.+.
T Consensus 316 --~~q~K~~~k---qqk~i~~~K~~ia~~g~g~a~~~ 347 (614)
T KOG0927|consen 316 --ENQMKAYEK---QQKQIAHMKDLIARFGHGSAKLG 347 (614)
T ss_pred --HHHHHHHHH---HHhHHHHhhHHHHhhcccchhhh
Confidence 444444333 45566777765555444444433
No 439
>PRK05973 replicative DNA helicase; Provisional
Probab=92.94 E-value=0.073 Score=54.66 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=27.3
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
.|+.+..-+|+.|+||+|||++|-.+|.+. |-+.+
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vl 96 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGV 96 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 477777889999999999999888776654 55543
No 440
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.92 E-value=0.11 Score=57.26 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=24.5
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
+..-++||||.|.|||+|++|++++....
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~ 140 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN 140 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 34568999999999999999999987533
No 441
>PRK13764 ATPase; Provisional
Probab=92.89 E-value=0.047 Score=63.04 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=23.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+++|+.||||+|||++++|++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999998875
No 442
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.86 E-value=0.093 Score=55.45 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=25.4
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+....-++++||||||||.+|-.+|..+
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467776778899999999999999888764
No 443
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=92.83 E-value=1.3 Score=56.31 Aligned_cols=296 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccc
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEE 184 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~ 184 (613)
+.|||-|-|+++++.|.-|||+.-|-+|+-++-++=++.| |++|+---.....+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~--------------------------DLfGsd~Pve~~Ge 1597 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLC--------------------------DLFGSDLPVEEGGE 1597 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHH--------------------------HHhCCCCCcccCce
Q ss_pred cccccccCCCCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcch--hHHHHHHHHHHHHHhhhc
Q 007208 185 TQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSF--DEKLLIQSIYRVLCYVSK 262 (613)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~--dek~~lqaL~evl~s~s~ 262 (613)
-+.- .+-|....|-.+|.. .=.++-|++.|=+...
T Consensus 1598 f~w~-----------------------------------------dapfL~amr~G~WVlLDEiNLaSQSVlEGLNac-- 1634 (4600)
T COG5271 1598 FRWM-----------------------------------------DAPFLHAMRDGGWVLLDEINLASQSVLEGLNAC-- 1634 (4600)
T ss_pred eEec-----------------------------------------ccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHH--
Q ss_pred CCCEEEEEccchhhhhhhhH-HHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQR-TYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r-~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
+--+.+ ++--+++.++-.+.--++.+.++++....-.-++..+..+|. .|-|..-....-..|.
T Consensus 1635 --------------LDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia 1699 (4600)
T COG5271 1635 --------------LDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDGLTTDDITHIA 1699 (4600)
T ss_pred --------------HhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEecccccchHHHHH
Q ss_pred H---HHHHHHHHHhhhhhhhhHHHHHhhcCCCCchh-----------------------hhhhcccCcccchhhHHHHHH
Q 007208 342 K---SQLEEDMKMMQAKDNRNHIMEVLSANDLDCDD-----------------------LDSINVADTMVLGNYIEEIVV 395 (613)
Q Consensus 342 k---~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~d-----------------------La~l~~~d~~~~~~~ie~iV~ 395 (613)
+ .++++|.. ...|.-+.+-.|-.|.| |..+..-.-+=+..+|+.+|.
T Consensus 1700 ~~~yp~v~~d~~-------~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~llNq~~~~edvd~~dfid~~V~ 1772 (4600)
T COG5271 1700 NKMYPQVNEDWR-------LKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLILLNQVGTLEDVDTSDFIDESVV 1772 (4600)
T ss_pred HhhCCccChHHH-------HHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHHHhhccCccccCCHHHHHHHHHH
Q ss_pred H----------HHHhhhhcCCCcccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCC
Q 007208 396 S----------AVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAG 465 (613)
Q Consensus 396 ~----------A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 465 (613)
. |.-..-.--.+-+.+..-..+|++-|+-+-+
T Consensus 1773 ~r~rtv~dr~rt~~l~~evfg~~~~r~~~f~ls~~~~kv~~s-------------------------------------- 1814 (4600)
T COG5271 1773 RRMRTVEDRVRTCELFKEVFGDYEPRTIGFSLSSQCFKVGHS-------------------------------------- 1814 (4600)
T ss_pred HHhhhHhhhhHHHHHHHHHhcccCcccccccchhhHhhcCce--------------------------------------
Q ss_pred cccCCCCCchhhhhhcCCCCCCCCCCcccccCCCCCCCCchHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCc
Q 007208 466 TEIMKPESTSEAEKSAAAPNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLP 545 (613)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~p 545 (613)
..+=.++....--+...-++.+.+.+.-.+.-
T Consensus 1815 -----------------------------------------------v~vr~~err~~l~~~~~~l~sql~vlEsV~~c- 1846 (4600)
T COG5271 1815 -----------------------------------------------VTVRMKERRPRLDDSFVLLHSQLQVLESVMRC- 1846 (4600)
T ss_pred -----------------------------------------------EEEeccccCCCcccchhhhhhhhHHHHHHHHH-
Q ss_pred CCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCce
Q 007208 546 LRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQAS 588 (613)
Q Consensus 546 l~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~f 588 (613)
.....| ++|.||.|+|||.+.|-+|.-+|..+
T Consensus 1847 ---------In~nwP--lIlvG~t~~GKt~~lRflasI~G~~~ 1878 (4600)
T COG5271 1847 ---------INMNWP--LILVGDTGVGKTSLLRFLASIFGQEM 1878 (4600)
T ss_pred ---------HhcCCC--EEEEcCCCCchHHHHHHHHHHhcccc
No 444
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.78 E-value=0.08 Score=59.71 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=25.2
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+.+.+|+.||||||||++|..++.+
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~ 44 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYN 44 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 47888889999999999999999987543
No 445
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.70 E-value=0.049 Score=59.82 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.3
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCC
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
-.|++||||||||+|++.|++....
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Confidence 4889999999999999999997754
No 446
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=92.70 E-value=4.9 Score=44.56 Aligned_cols=231 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcc------------------------cccCC
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKES------------------------HFQRS 160 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~------------------------~~~~s 160 (613)
.++|+.||-+..+.++|||||.=+--.-++. --. |+|..+.+ -+--.
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~--------f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~l 109 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVI-GCP--------FNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVAL 109 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceec-CCC--------CCCCCCChhhhhHHHHhhccccccccccceecceecC
Q ss_pred CchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCC
Q 007208 161 PSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTS 240 (613)
Q Consensus 161 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (613)
---+|-+|| +|+.++..-.++.+..+..|
T Consensus 110 Pl~ateDrv---vGslDi~ka~~~g~~af~PG------------------------------------------------ 138 (423)
T COG1239 110 PLGATEDRL---VGSLDIEKALEEGPKAFQPG------------------------------------------------ 138 (423)
T ss_pred CCccchhhh---ccccCHHHHHhcCccccCCc------------------------------------------------
Q ss_pred CcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHHh-------------hcCcEEEEeeeecc
Q 007208 241 SWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-------------LLASVLILGSRIVD 307 (613)
Q Consensus 241 ~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-------------l~g~VlIiGS~~~d 307 (613)
++-++ .-=|||||++-.+ ..++...|...++. ++..+++|||
T Consensus 139 ---------------lLa~A---nRGIlYvDEvnlL---~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligT---- 193 (423)
T COG1239 139 ---------------LLARA---NRGILYVDEVNLL---DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGT---- 193 (423)
T ss_pred ---------------chhhc---cCCEEEEeccccc---cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEee----
Q ss_pred CCCCccccchHhhccCCceEEeCCCCh-HHHHHHHHHHHHHHH-----------HHhhhhhhhhHHHHHhhcCCCCchh-
Q 007208 308 LSNDQREVDGRVTALFPYNIEIRPPED-ENHLVSWKSQLEEDM-----------KMMQAKDNRNHIMEVLSANDLDCDD- 374 (613)
Q Consensus 308 s~~~~~~v~~~l~~lF~~~IeI~~P~e-e~Rl~Ilk~~L~~d~-----------k~~~~~~N~~~I~~vL~~~dl~c~d- 374 (613)
.++..-++-++|..+|.-+|.+..|.+ ++|.+|.++-++-+. ....++..+..-++.+...-+.+.-
T Consensus 194 mNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~ 273 (423)
T COG1239 194 MNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAE 273 (423)
T ss_pred cCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHH
Q ss_pred --hhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhh
Q 007208 375 --LDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSI 428 (613)
Q Consensus 375 --La~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~ 428 (613)
++.+|..-.+-..+----++..|..++-. +|+..++.+++..+..+
T Consensus 274 ~~ia~~~~~~~v~g~radi~~~r~a~a~aa~--------~Gr~~v~~~Di~~a~~l 321 (423)
T COG1239 274 TKIAELCARLAVDGHRADIVVVRAAKALAAL--------RGRTEVEEEDIREAAEL 321 (423)
T ss_pred HHHHHHHHHhccCCCchhhHHHHHHHHHHHh--------cCceeeehhhHHHHHhh
No 447
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.65 E-value=0.2 Score=53.29 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=60.7
Q ss_pred HHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHH
Q 007208 46 KMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALA 125 (613)
Q Consensus 46 ~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA 125 (613)
.++.-++..-++.+-...||++|.+- +..+......+.--++. |.. ....+.++|+||.+.+++.|+.|+|
T Consensus 107 ~~~~~i~~a~~p~~~~~atf~~~~~~--~~~~~~~~~~~~~fi~~-----~~~--~~~~~gl~L~G~~G~GKThLa~Aia 177 (306)
T PRK08939 107 AIKKRIQSIYMPKDLLQASLADIDLD--DRDRLDALMAALDFLEA-----YPP--GEKVKGLYLYGDFGVGKSYLLAAIA 177 (306)
T ss_pred HHHHHHHHcCCCHhHhcCcHHHhcCC--ChHHHHHHHHHHHHHHH-----hhc--cCCCCeEEEECCCCCCHHHHHHHHH
Confidence 34444555667666667999999875 32333333333222211 211 1235789999999999999999999
Q ss_pred hhh---CCeEEEeecccchhhhhh
Q 007208 126 HFF---EAKLLLLDVTDFSLKIQS 146 (613)
Q Consensus 126 ~~f---~a~LL~lD~~d~~~~~~~ 146 (613)
+++ |.+.+.+...+|...+..
T Consensus 178 ~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 178 NELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred HHHHHcCCCEEEEEHHHHHHHHHH
Confidence 998 777788888788766643
No 448
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.64 E-value=0.092 Score=58.72 Aligned_cols=30 Identities=37% Similarity=0.542 Sum_probs=26.1
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-+|++||||+|||+++..+|...
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 477777789999999999999999988765
No 449
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=92.62 E-value=0.08 Score=60.10 Aligned_cols=29 Identities=38% Similarity=0.524 Sum_probs=26.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-|.+.||+|||||++|+.+|..+|+.++
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l~~~~~ 313 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKLGLLYL 313 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 45778999999999999999999998877
No 450
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.55 E-value=0.12 Score=56.81 Aligned_cols=52 Identities=29% Similarity=0.307 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 530 ALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 530 Gl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+++...+.+.+...+..+..+. +.+.+-++|.||.|+|||+++..+|..+
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~---~~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD---LSNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce---ecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356777777777765454444332 2445678899999999999999998765
No 451
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.55 E-value=0.097 Score=51.69 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=24.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh-CCcee
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL-GQASL 589 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~-g~~fi 589 (613)
..|.-+++.||||+|||+++..+..++ +-.++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v 45 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIV 45 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SE
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeE
Confidence 456789999999999999999999887 33443
No 452
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.55 E-value=0.07 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhH
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLP 581 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA 581 (613)
.+...+.|.||+|+|||+|++++.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 444679999999999999999987
No 453
>PRK10646 ADP-binding protein; Provisional
Probab=92.48 E-value=0.1 Score=50.15 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=26.1
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.+..-|+|.|+=|+|||+++|++|+.+|.+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 444458899999999999999999999974
No 454
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.47 E-value=0.068 Score=59.18 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...+++.||||||||++|.+++..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 457999999999999999998877
No 455
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.45 E-value=0.08 Score=50.64 Aligned_cols=29 Identities=38% Similarity=0.621 Sum_probs=24.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+|+||.||+|.|||++|.++... |..++
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lv 42 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLV 42 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEE
Confidence 479999999999999999888875 56666
No 456
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=92.44 E-value=0.09 Score=58.81 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=27.6
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.|.-|+++|+||+|||++|..+|..+|+..+
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~i 284 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRI 284 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 4677899999999999999999999998743
No 457
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.41 E-value=0.11 Score=52.07 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+..-+++.|+||+|||.+|..+|.+
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~ 39 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQ 39 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47777778999999999999998888754
No 458
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.36 E-value=0.11 Score=46.30 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=29.9
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
.|+++||+..++.++||.||+.+|.+.+.+|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 38999999999999999999999999988886
No 459
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.35 E-value=0.087 Score=56.96 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=0.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
+.+.++||+||+|+||+.+|+++|..+.+
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcC
No 460
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.32 E-value=2.2 Score=45.90 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=44.8
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
..--|++|+++|.+ +....+.|.+.++..+.++ +|+.+ +++..+...++++- ..+.+++|.+++-.+-+
T Consensus 112 ~~~kV~iiEp~~~L---d~~a~naLLk~LEep~~~~~~Ilvt------h~~~~ll~ti~SRc-~~~~~~~~~~~~~~~~L 181 (325)
T PRK08699 112 GGLRVILIHPAESM---NLQAANSLLKVLEEPPPQVVFLLVS------HAADKVLPTIKSRC-RKMVLPAPSHEEALAYL 181 (325)
T ss_pred CCceEEEEechhhC---CHHHHHHHHHHHHhCcCCCEEEEEe------CChHhChHHHHHHh-hhhcCCCCCHHHHHHHH
Confidence 34468888999995 2345556777888876554 55543 33445555665543 45678899888876555
Q ss_pred H
Q 007208 342 K 342 (613)
Q Consensus 342 k 342 (613)
+
T Consensus 182 ~ 182 (325)
T PRK08699 182 R 182 (325)
T ss_pred H
Confidence 4
No 461
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.28 E-value=0.074 Score=62.06 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=19.1
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-+|++||||||||+++.++..++
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~ 197 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQL 197 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999888777653
No 462
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.25 E-value=0.15 Score=56.34 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 532 EEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 532 ~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++++.+.+.+...+..+..+. ..++-|+|.||+|+|||+++..||..+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~~----~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVFE----KEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHHHHhccccccc----cCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 3445555555433233332221 224678999999999999999999765
No 463
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.24 E-value=0.072 Score=57.68 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.1
Q ss_pred eeeecCCCCCchhhhhhhHHh
Q 007208 563 ILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e 583 (613)
+.|.||+|||||++-|+||.-
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 668999999999999999954
No 464
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.21 E-value=0.099 Score=56.13 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|++..+-+++|||||||||+||-.++.+.
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~ 79 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEA 79 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467777778899999999999998877543
No 465
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.13 E-value=0.089 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=18.2
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-+.+.||.|||||++|-+.|.+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47889999999999999999764
No 466
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.13 E-value=0.2 Score=55.59 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++-++|.||+|+|||+++..+|...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999999754
No 467
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.11 E-value=1.3 Score=47.56 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=48.6
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-|++||++|.+ +....+.|.+.|+.-|+.+++|-. ++....+.+.|.++. ..|++.+|++++-.+.++
T Consensus 109 ~~~kvviI~~a~~~---~~~a~NaLLK~LEEPp~~~~~Il~-----t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 109 SNKKVYIIEHADKM---TASAANSLLKFLEEPSGGTTAILL-----TENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred cCceEEEeehHhhh---CHHHHHHHHHHhcCCCCCceEEEE-----eCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 34569999999995 234566788888888877644432 223456666666653 578899999888766665
No 468
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.10 E-value=0.15 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++-++|+||+|+|||+++.-+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998765
No 469
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=92.06 E-value=0.16 Score=56.89 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=44.4
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC---CceeeccCC
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG---QASLMSPCL 594 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g---~~fi~~v~~ 594 (613)
+.++.|-....+.+.+.+.. . ......||++|.+||||.++|++|-.... -|||...|+
T Consensus 140 ~~~liG~S~am~~l~~~i~k-------v----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNca 201 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAK-------V----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCA 201 (464)
T ss_pred cCCceecCHHHHHHHHHHHH-------H----hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecc
Confidence 44677777777777776654 1 12345699999999999999999998875 499976665
No 470
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.01 E-value=0.18 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=24.3
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..+..+||+||+|+||+++|.++|..+-
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 4456899999999999999999998753
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.97 E-value=0.097 Score=56.42 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred ceeeecCCCCCchhhhhhhHHhhC
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
-+|+.||+|+|||++.+++.....
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 478899999999999999998764
No 472
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.96 E-value=0.087 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.9
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+-|+|.||.|||||+|++++-.+-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 458999999999999999998653
No 473
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.95 E-value=0.14 Score=54.52 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=25.6
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+....-++++||||||||.+|-.+|..+
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 467777778899999999999999888764
No 474
>PRK04132 replication factor C small subunit; Provisional
Probab=91.92 E-value=0.13 Score=61.59 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=32.7
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhh
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCW 576 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~l 576 (613)
.+|+||.|.+++++.|+..+.. + ....++|+||||+||++.
T Consensus 16 ~~f~dIiGqe~i~~~Lk~~i~~-----------~--~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 16 QRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCCcccc
Confidence 4488999999999999998865 1 112378999999999764
No 475
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.86 E-value=0.11 Score=53.77 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
...++++||+|||||++++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 346899999999999999999988765
No 476
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=91.82 E-value=0.1 Score=62.70 Aligned_cols=28 Identities=46% Similarity=0.560 Sum_probs=26.0
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
-|.+-||||||||++|+.+|..+++.++
T Consensus 36 ~i~idG~~gsGKst~~~~la~~l~~~~~ 63 (863)
T PRK12269 36 IIALDGPAGSGKSSVCRLLASRLGAQCL 63 (863)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4678899999999999999999999988
No 477
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.81 E-value=0.12 Score=52.08 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=27.1
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhh----CCcee
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRL----GQASL 589 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~----g~~fi 589 (613)
|+.+..-+++.||||+|||++|..+|... |.+++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vl 46 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVL 46 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceE
Confidence 66777778999999999999988777654 66654
No 478
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.66 E-value=0.12 Score=51.21 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=19.9
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+-+++.||||||||++.++++..+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHH
Confidence 457789999999999999887554
No 479
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.62 E-value=0.21 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++|+.||+|+|||+++++++...
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999876
No 480
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.60 E-value=2.6 Score=45.25 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=35.6
Q ss_pred cCCCCCCCceEeecchhHHHHHHHHHHHhhhC---CeEEEeecccch
Q 007208 98 RNLSPASQAILLSGPAELYQQMLAKALAHFFE---AKLLLLDVTDFS 141 (613)
Q Consensus 98 ~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~---a~LL~lD~~d~~ 141 (613)
..+......|||.|+++.+++++|+++-+... .+|+.||...++
T Consensus 16 ~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 16 SRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred HHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 33455667799999999999999999976554 789999987664
No 481
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.58 E-value=0.1 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.1
Q ss_pred eeeecCCCCCchhhhhhhHHhhCC
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
|++.|++|+|||+|.+.++.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 788999999999999999976543
No 482
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.57 E-value=0.41 Score=53.30 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=24.8
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
++.-|+|.||+|+|||++|..+|..+ |..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~ 132 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPC 132 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 35678899999999999999998765 54444
No 483
>PLN02840 tRNA dimethylallyltransferase
Probab=91.57 E-value=0.12 Score=57.27 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=25.6
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
-|++.||+|+|||++|..||.+++.++|
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~~~ii 50 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLNGEII 50 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCeE
Confidence 4788999999999999999999998776
No 484
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.50 E-value=0.099 Score=56.35 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
-+.|.||+|||||++-+.||.-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3788999999999999999964
No 485
>PRK07667 uridine kinase; Provisional
Probab=91.47 E-value=0.11 Score=51.31 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.0
Q ss_pred ceeeecCCCCCchhhhhhhHHhhC
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
=|.+.|+||+|||++|+.++..++
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 366899999999999999999864
No 486
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=91.39 E-value=0.17 Score=54.04 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=24.8
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+...+-++++||||+|||.+|-.+|-..
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~ 120 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTA 120 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHH
Confidence 577777778899999999999998777533
No 487
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=91.37 E-value=0.18 Score=47.60 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+.+||.+|+|+|||.++..++.++..+++
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l 54 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELARKVL 54 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHCEEE
T ss_pred CCCEEEEECCCCCcChhhhhhhhcccccee
Confidence 467999999999999999987777766766
No 488
>PTZ00202 tuzin; Provisional
Probab=91.35 E-value=0.41 Score=53.50 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=39.3
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+..|=+....+|.+.+.. .....++=+.|.||+|||||++++.++...+.+.+
T Consensus 263 ~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL 315 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAV 315 (550)
T ss_pred CCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEE
Confidence 667777777788776642 22233455779999999999999999988886544
No 489
>PRK09862 putative ATP-dependent protease; Provisional
Probab=91.31 E-value=0.15 Score=57.92 Aligned_cols=46 Identities=28% Similarity=0.450 Sum_probs=32.3
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|.++-|...+++.+. + .......++|+||||||||++++.++..+
T Consensus 189 d~~~v~Gq~~~~~al~----l-----------aa~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE----I-----------TAAGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CeEEEECcHHHHhhhh----e-----------eccCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 4667777666655432 1 11233569999999999999999998643
No 490
>PRK14974 cell division protein FtsY; Provisional
Probab=91.28 E-value=0.21 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=21.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.-++|.||||+|||++++.+|..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5678899999999999888888654
No 491
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.22 E-value=0.15 Score=49.49 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++.-+.+.|+||+|||++|++++..+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999886
No 492
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.20 E-value=0.2 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+-++|.||+|+|||+++..+|..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999888887654
No 493
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.19 E-value=0.24 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++|+.||+|+|||++++|++.+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999875
No 494
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.19 E-value=0.089 Score=48.01 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.9
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.+.||+|+|||+|.++|+...
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 344568899999999999999999775
No 495
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.18 E-value=0.17 Score=54.80 Aligned_cols=30 Identities=20% Similarity=0.051 Sum_probs=24.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+....-..++||||||||.+|-.+|-..
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~lqlav~~ 150 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLAHTLCVTT 150 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence 577777778899999999999998887544
No 496
>PRK10867 signal recognition particle protein; Provisional
Probab=91.14 E-value=0.21 Score=55.66 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=21.7
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+|.-|++.||||+|||++|..+|..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346778999999999999777777643
No 497
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=91.11 E-value=2.1 Score=48.61 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=36.1
Q ss_pred CCCCCCCceEeecchhHHHHHHHHHHHhhh---CCeEEEeecccch
Q 007208 99 NLSPASQAILLSGPAELYQQMLAKALAHFF---EAKLLLLDVTDFS 141 (613)
Q Consensus 99 ~L~~~~~~ILLsGP~e~yqe~LaKALA~~f---~a~LL~lD~~d~~ 141 (613)
.+......|||.|+++.+++++|+++.+.. +.+|+.+|...++
T Consensus 205 ~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 205 VVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred HHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 345667789999999999999999998874 4789999987764
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.07 E-value=0.15 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+.-+.|.|++|+|||++|++++..+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568889999999999999999976
No 499
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=91.02 E-value=0.35 Score=54.32 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=51.4
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
..++...+..|+|......++.+.|.. -......||+.|..||||.++|++|-..+ .-||+...|+
T Consensus 215 ~~~~~~~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCA 283 (550)
T COG3604 215 LSEVVLEVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCA 283 (550)
T ss_pred ccchhcccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecc
Confidence 344466777888988888888888765 12334679999999999999999999886 4688866665
Q ss_pred C
Q 007208 595 P 595 (613)
Q Consensus 595 ~ 595 (613)
.
T Consensus 284 A 284 (550)
T COG3604 284 A 284 (550)
T ss_pred c
Confidence 3
No 500
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.99 E-value=0.27 Score=52.81 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..+.++||+||+|+||+++|+++|..+-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 34568999999999999999999988644
Done!