Query 007208
Match_columns 613
No_of_seqs 383 out of 1716
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 9.5E-45 3.3E-49 419.5 22.9 345 61-613 199-568 (806)
2 1ypw_A Transitional endoplasmi 100.0 3.1E-28 1.1E-32 283.6 23.8 344 61-612 199-567 (806)
3 4b4t_J 26S protease regulatory 99.9 7.7E-27 2.6E-31 251.2 20.5 232 61-429 143-389 (405)
4 4b4t_I 26S protease regulatory 99.9 2.4E-26 8.2E-31 248.5 20.0 234 59-429 175-423 (437)
5 4b4t_M 26S protease regulatory 99.9 3.7E-26 1.3E-30 248.6 20.9 235 59-430 174-423 (434)
6 4b4t_L 26S protease subunit RP 99.9 1.8E-25 6.1E-30 243.4 19.0 234 60-430 175-423 (437)
7 4b4t_H 26S protease regulatory 99.9 3.2E-25 1.1E-29 241.7 20.4 233 60-429 203-450 (467)
8 4b4t_K 26S protease regulatory 99.9 1.4E-24 4.9E-29 235.8 21.8 232 59-427 165-412 (428)
9 3cf2_A TER ATPase, transitiona 99.9 2.4E-23 8.3E-28 241.1 10.8 261 41-430 446-744 (806)
10 4b4t_J 26S protease regulatory 99.9 3E-22 1E-26 215.6 7.4 95 518-612 140-238 (405)
11 4b4t_I 26S protease regulatory 99.8 3.3E-21 1.1E-25 208.5 7.7 94 519-612 175-272 (437)
12 4b4t_H 26S protease regulatory 99.8 3.9E-21 1.3E-25 209.6 7.1 94 519-612 202-299 (467)
13 4b4t_M 26S protease regulatory 99.8 4.8E-21 1.6E-25 208.4 7.2 95 518-612 173-271 (434)
14 4b4t_L 26S protease subunit RP 99.8 5.8E-21 2E-25 208.0 7.5 94 519-612 174-271 (437)
15 4b4t_K 26S protease regulatory 99.8 8.4E-21 2.9E-25 206.3 8.0 94 519-612 165-262 (428)
16 1xwi_A SKD1 protein; VPS4B, AA 99.8 3.8E-19 1.3E-23 186.1 19.9 215 59-402 5-231 (322)
17 2qp9_X Vacuolar protein sortin 99.8 1.6E-18 5.5E-23 183.6 21.3 229 45-403 31-270 (355)
18 3hu3_A Transitional endoplasmi 99.8 1.7E-18 5.9E-23 191.3 19.9 239 62-429 200-459 (489)
19 3eie_A Vacuolar protein sortin 99.8 2.3E-18 8E-23 179.4 19.5 216 59-403 11-237 (322)
20 3cf0_A Transitional endoplasmi 99.8 2.2E-18 7.7E-23 178.0 18.0 242 60-430 9-282 (301)
21 2x8a_A Nuclear valosin-contain 99.8 9E-18 3.1E-22 172.0 17.9 244 61-430 5-265 (274)
22 2zan_A Vacuolar protein sortin 99.8 4.7E-18 1.6E-22 185.4 16.6 227 46-402 115-353 (444)
23 3h4m_A Proteasome-activating n 99.7 2.2E-16 7.5E-21 160.1 21.3 233 60-429 11-258 (285)
24 3b9p_A CG5977-PA, isoform A; A 99.7 6.5E-16 2.2E-20 157.7 21.7 251 47-430 3-273 (297)
25 3d8b_A Fidgetin-like protein 1 99.7 1.5E-15 5E-20 160.8 24.6 255 46-430 65-335 (357)
26 1lv7_A FTSH; alpha/beta domain 99.7 1.3E-15 4.6E-20 152.6 20.5 235 57-429 3-252 (257)
27 2ce7_A Cell division protein F 99.7 1.8E-15 6.3E-20 166.5 23.2 238 54-429 3-256 (476)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.7E-15 5.9E-20 150.9 20.1 232 62-429 2-249 (262)
29 3vfd_A Spastin; ATPase, microt 99.7 2.1E-15 7.3E-20 161.0 21.1 243 54-429 104-365 (389)
30 1r6b_X CLPA protein; AAA+, N-t 99.6 8E-15 2.7E-19 169.3 20.7 231 255-590 269-518 (758)
31 1ixz_A ATP-dependent metallopr 99.6 6E-14 2E-18 140.3 19.4 232 57-426 7-253 (254)
32 2r62_A Cell division protease 99.6 8.3E-16 2.9E-20 154.6 5.8 236 56-429 1-253 (268)
33 2x8a_A Nuclear valosin-contain 99.6 1.3E-15 4.6E-20 155.9 6.8 92 520-611 4-99 (274)
34 2dhr_A FTSH; AAA+ protein, hex 99.6 3.4E-14 1.2E-18 157.3 18.3 238 54-430 20-272 (499)
35 1xwi_A SKD1 protein; VPS4B, AA 99.6 1.4E-15 4.8E-20 159.0 6.5 93 519-612 5-102 (322)
36 1iy2_A ATP-dependent metallopr 99.6 1.2E-13 4.1E-18 140.4 19.2 230 59-426 33-277 (278)
37 1qvr_A CLPB protein; coiled co 99.5 1.1E-13 3.8E-18 162.2 20.9 88 256-347 254-347 (854)
38 1ypw_A Transitional endoplasmi 99.5 1.3E-15 4.4E-20 177.6 2.0 216 61-405 472-702 (806)
39 3pxi_A Negative regulator of g 99.5 5.6E-14 1.9E-18 162.5 14.7 79 257-345 260-338 (758)
40 2qp9_X Vacuolar protein sortin 99.5 5.3E-15 1.8E-19 156.6 5.7 98 514-612 39-140 (355)
41 3cf0_A Transitional endoplasmi 99.5 2.6E-15 9E-20 155.0 2.3 94 519-612 8-105 (301)
42 3eie_A Vacuolar protein sortin 99.5 9.6E-15 3.3E-19 152.1 6.0 93 519-612 11-107 (322)
43 3t15_A Ribulose bisphosphate c 99.4 1.1E-12 3.8E-17 135.2 15.7 186 70-391 9-221 (293)
44 2zan_A Vacuolar protein sortin 99.4 3.8E-14 1.3E-18 154.5 4.1 105 506-612 115-224 (444)
45 3h4m_A Proteasome-activating n 99.4 1.5E-13 5.2E-18 139.1 7.4 94 519-612 10-107 (285)
46 2qz4_A Paraplegin; AAA+, SPG7, 99.4 2.9E-13 9.8E-18 134.8 7.9 91 521-612 1-95 (262)
47 1lv7_A FTSH; alpha/beta domain 99.4 2.8E-13 9.7E-18 135.6 6.5 94 518-612 4-101 (257)
48 2ce7_A Cell division protein F 99.4 8.8E-13 3E-17 145.2 9.7 92 520-612 10-105 (476)
49 3b9p_A CG5977-PA, isoform A; A 99.3 6.7E-13 2.3E-17 135.4 7.1 103 508-612 4-110 (297)
50 3vfd_A Spastin; ATPase, microt 99.3 7.8E-13 2.7E-17 141.1 6.5 104 507-612 97-204 (389)
51 3d8b_A Fidgetin-like protein 1 99.3 1.5E-12 5E-17 137.8 7.2 106 505-612 64-173 (357)
52 3hu3_A Transitional endoplasmi 99.3 8.3E-13 2.9E-17 145.9 5.0 91 522-612 200-294 (489)
53 2r62_A Cell division protease 99.3 2.7E-13 9.1E-18 136.3 0.5 95 517-612 2-100 (268)
54 2dhr_A FTSH; AAA+ protein, hex 99.3 5E-12 1.7E-16 139.9 7.6 91 521-612 26-120 (499)
55 1ixz_A ATP-dependent metallopr 99.2 8E-12 2.7E-16 124.8 7.4 95 517-612 7-105 (254)
56 1ofh_A ATP-dependent HSL prote 99.1 2.3E-09 7.8E-14 108.8 19.6 257 41-427 3-297 (310)
57 1iy2_A ATP-dependent metallopr 99.1 7.8E-11 2.7E-15 119.6 7.5 92 520-612 34-129 (278)
58 3syl_A Protein CBBX; photosynt 99.1 3.5E-10 1.2E-14 115.5 12.3 84 264-347 130-219 (309)
59 2c9o_A RUVB-like 1; hexameric 99.1 1.6E-10 5.6E-15 126.0 8.8 84 519-611 30-119 (456)
60 3uk6_A RUVB-like 2; hexameric 99.0 2E-08 6.7E-13 105.0 18.5 133 264-429 189-330 (368)
61 3hws_A ATP-dependent CLP prote 98.9 9.2E-09 3.1E-13 108.4 13.9 86 41-141 3-88 (363)
62 3t15_A Ribulose bisphosphate c 98.9 3.7E-10 1.3E-14 116.3 2.8 57 555-611 31-91 (293)
63 1g41_A Heat shock protein HSLU 98.9 6.9E-10 2.4E-14 121.1 4.9 87 526-612 15-108 (444)
64 2c9o_A RUVB-like 1; hexameric 98.9 4.4E-10 1.5E-14 122.6 2.8 69 61-141 32-102 (456)
65 3u61_B DNA polymerase accessor 98.9 4.5E-08 1.5E-12 100.9 17.2 157 63-347 23-180 (324)
66 1jbk_A CLPB protein; beta barr 98.8 9.4E-09 3.2E-13 95.4 9.7 76 263-341 114-194 (195)
67 3pfi_A Holliday junction ATP-d 98.8 3.1E-07 1.1E-11 95.0 20.5 210 64-429 27-254 (338)
68 1g41_A Heat shock protein HSLU 98.7 1.4E-08 4.7E-13 110.8 8.3 178 41-342 3-189 (444)
69 4akg_A Glutathione S-transfera 98.7 1.5E-07 5E-12 121.1 18.6 83 264-347 1336-1433(2695)
70 3syl_A Protein CBBX; photosynt 98.7 6.6E-09 2.3E-13 106.0 5.2 87 525-612 30-130 (309)
71 2r44_A Uncharacterized protein 98.7 4.2E-07 1.4E-11 94.0 18.2 151 266-429 111-297 (331)
72 1um8_A ATP-dependent CLP prote 98.7 4.4E-07 1.5E-11 95.8 18.4 86 41-141 9-109 (376)
73 1d2n_A N-ethylmaleimide-sensit 98.7 1.6E-07 5.3E-12 94.7 13.5 38 102-139 62-99 (272)
74 3m6a_A ATP-dependent protease 98.7 6.7E-08 2.3E-12 107.9 11.8 151 256-427 168-339 (543)
75 2z4s_A Chromosomal replication 98.7 4.7E-07 1.6E-11 98.4 18.1 134 263-428 193-331 (440)
76 2v1u_A Cell division control p 98.7 1.2E-06 4.2E-11 91.0 20.4 152 249-429 117-276 (387)
77 3cmw_A Protein RECA, recombina 98.7 4.9E-09 1.7E-13 129.5 2.3 94 519-612 1013-1157(1706)
78 1g8p_A Magnesium-chelatase 38 98.7 1.5E-06 5E-11 89.8 20.6 151 264-429 144-322 (350)
79 3bos_A Putative DNA replicatio 98.6 8.4E-07 2.9E-11 85.9 16.2 130 264-427 104-241 (242)
80 1hqc_A RUVB; extended AAA-ATPa 98.6 7.6E-07 2.6E-11 91.1 15.5 75 263-345 89-181 (324)
81 2chg_A Replication factor C sm 98.6 2.3E-06 7.8E-11 81.0 17.7 75 263-346 101-175 (226)
82 1d2n_A N-ethylmaleimide-sensit 98.6 5.8E-08 2E-12 97.8 6.3 57 556-612 60-121 (272)
83 1sxj_A Activator 1 95 kDa subu 98.5 1.1E-06 3.8E-11 97.3 16.7 187 63-347 36-224 (516)
84 1l8q_A Chromosomal replication 98.5 4.8E-06 1.6E-10 85.9 19.3 78 264-346 98-180 (324)
85 4fcw_A Chaperone protein CLPB; 98.5 2.4E-06 8.3E-11 86.8 16.4 82 264-348 119-232 (311)
86 2p65_A Hypothetical protein PF 98.5 6E-07 2.1E-11 83.2 10.7 68 263-333 114-187 (187)
87 2qby_B CDC6 homolog 3, cell di 98.5 9.5E-06 3.3E-10 84.7 20.4 88 249-346 122-211 (384)
88 3hws_A ATP-dependent CLP prote 98.4 1E-07 3.5E-12 100.3 5.0 85 527-611 16-108 (363)
89 1njg_A DNA polymerase III subu 98.4 1.2E-05 4.2E-10 76.7 19.1 77 262-347 124-200 (250)
90 3uk6_A RUVB-like 2; hexameric 98.4 3.3E-07 1.1E-11 95.6 7.8 81 521-610 39-125 (368)
91 3te6_A Regulatory protein SIR3 98.4 3.2E-06 1.1E-10 88.4 13.8 82 261-347 129-213 (318)
92 1ofh_A ATP-dependent HSL prote 98.4 1.1E-07 3.7E-12 96.4 2.4 84 527-610 16-106 (310)
93 2qby_A CDC6 homolog 1, cell di 98.3 3.8E-05 1.3E-09 79.4 21.4 93 249-346 115-211 (386)
94 1jbk_A CLPB protein; beta barr 98.3 7.9E-07 2.7E-11 82.3 7.7 76 523-611 19-110 (195)
95 1sxj_A Activator 1 95 kDa subu 98.3 4E-07 1.4E-11 100.8 5.5 69 523-591 36-108 (516)
96 2p65_A Hypothetical protein PF 98.3 1E-06 3.5E-11 81.6 7.2 75 524-611 20-110 (187)
97 1r6b_X CLPA protein; AAA+, N-t 98.3 7.1E-06 2.4E-10 94.6 15.8 148 105-347 489-668 (758)
98 1fnn_A CDC6P, cell division co 98.3 5.2E-05 1.8E-09 78.9 20.7 91 249-347 112-208 (389)
99 1um8_A ATP-dependent CLP prote 98.3 5.2E-07 1.8E-11 95.3 5.3 84 527-610 22-128 (376)
100 3pxg_A Negative regulator of g 98.2 1.1E-06 3.7E-11 96.3 6.5 76 524-612 178-264 (468)
101 1sxj_B Activator 1 37 kDa subu 98.2 1.5E-05 5E-10 80.9 14.4 75 264-347 107-181 (323)
102 3pvs_A Replication-associated 98.2 1.2E-06 4E-11 95.7 6.5 74 523-612 23-99 (447)
103 3pfi_A Holliday junction ATP-d 98.2 9.4E-07 3.2E-11 91.4 5.3 60 523-590 26-85 (338)
104 3u61_B DNA polymerase accessor 98.2 1.4E-06 4.9E-11 89.6 6.6 56 523-590 23-78 (324)
105 3co5_A Putative two-component 98.2 7.1E-07 2.4E-11 81.7 3.8 52 527-590 5-56 (143)
106 3m6a_A ATP-dependent protease 98.2 7.7E-07 2.6E-11 99.4 4.0 83 523-612 78-173 (543)
107 1iqp_A RFCS; clamp loader, ext 98.1 3.2E-05 1.1E-09 78.6 15.3 75 263-346 109-183 (327)
108 3pxi_A Negative regulator of g 98.1 2.3E-05 7.9E-10 90.5 15.6 82 264-348 579-678 (758)
109 3pvs_A Replication-associated 98.1 1.7E-05 5.7E-10 86.6 12.5 77 262-347 104-180 (447)
110 3n70_A Transport activator; si 98.1 1.6E-06 5.4E-11 79.5 3.6 56 527-594 2-60 (145)
111 3nbx_X ATPase RAVA; AAA+ ATPas 98.1 3.9E-05 1.3E-09 84.9 14.9 75 264-344 109-195 (500)
112 3pxg_A Negative regulator of g 98.1 2.1E-06 7.1E-11 94.0 4.6 78 258-345 261-338 (468)
113 4akg_A Glutathione S-transfera 98.1 3.6E-05 1.2E-09 99.3 16.5 34 106-139 647-680 (2695)
114 1hqc_A RUVB; extended AAA-ATPa 98.0 3E-06 1E-10 86.7 5.4 60 523-590 9-68 (324)
115 2chq_A Replication factor C sm 98.0 6.4E-06 2.2E-10 83.4 6.9 75 263-346 101-175 (319)
116 1g8p_A Magnesium-chelatase 38 98.0 3.1E-06 1E-10 87.4 4.6 52 521-585 19-70 (350)
117 1jr3_A DNA polymerase III subu 97.9 9.9E-05 3.4E-09 76.6 14.8 76 263-347 118-193 (373)
118 2bjv_A PSP operon transcriptio 97.9 0.00016 5.6E-09 72.0 15.5 65 62-141 2-69 (265)
119 1sxj_D Activator 1 41 kDa subu 97.9 9.1E-05 3.1E-09 76.3 14.0 73 264-346 133-206 (353)
120 2bjv_A PSP operon transcriptio 97.9 4.4E-06 1.5E-10 83.5 3.9 58 523-591 3-63 (265)
121 2chg_A Replication factor C sm 97.9 1E-05 3.6E-10 76.4 5.8 49 523-584 14-62 (226)
122 2r44_A Uncharacterized protein 97.9 6.5E-06 2.2E-10 85.0 4.4 54 525-593 26-79 (331)
123 3kw6_A 26S protease regulatory 97.9 2.2E-05 7.5E-10 64.9 6.3 74 330-430 1-74 (78)
124 1qvr_A CLPB protein; coiled co 97.8 1.7E-05 5.9E-10 92.9 7.3 77 523-612 167-259 (854)
125 1l8q_A Chromosomal replication 97.8 2.5E-05 8.4E-10 80.5 6.6 58 521-589 6-69 (324)
126 3ec2_A DNA replication protein 97.8 1.5E-05 5E-10 75.0 4.2 30 555-584 33-62 (180)
127 1iqp_A RFCS; clamp loader, ext 97.8 1.9E-05 6.4E-10 80.3 5.2 50 523-585 22-71 (327)
128 1sxj_D Activator 1 41 kDa subu 97.7 1.1E-05 3.9E-10 83.1 3.5 50 523-585 34-83 (353)
129 1sxj_E Activator 1 40 kDa subu 97.7 0.00051 1.7E-08 71.0 15.8 74 263-346 133-207 (354)
130 3bos_A Putative DNA replicatio 97.7 2.6E-05 9E-10 75.2 5.6 51 522-585 24-77 (242)
131 1sxj_B Activator 1 37 kDa subu 97.7 3E-05 1E-09 78.6 6.2 49 523-584 18-66 (323)
132 2w58_A DNAI, primosome compone 97.7 3.1E-05 1.1E-09 73.9 5.8 72 509-589 8-86 (202)
133 2v1u_A Cell division control p 97.7 2.9E-05 1E-09 80.5 6.0 57 525-590 18-83 (387)
134 1in4_A RUVB, holliday junction 97.7 2.5E-05 8.6E-10 81.4 5.3 58 524-589 23-80 (334)
135 2chq_A Replication factor C sm 97.6 2.5E-05 8.6E-10 79.0 4.2 50 522-584 13-62 (319)
136 1njg_A DNA polymerase III subu 97.6 4.3E-05 1.5E-09 72.8 5.5 52 523-586 20-71 (250)
137 4fcw_A Chaperone protein CLPB; 97.6 3.3E-05 1.1E-09 78.4 5.0 60 526-589 17-79 (311)
138 2krk_A 26S protease regulatory 97.6 9.5E-05 3.3E-09 62.7 6.5 75 329-430 8-82 (86)
139 2qby_B CDC6 homolog 3, cell di 97.6 2.5E-05 8.7E-10 81.4 3.5 56 525-589 19-85 (384)
140 3te6_A Regulatory protein SIR3 97.6 4.1E-05 1.4E-09 80.1 5.0 27 558-584 43-69 (318)
141 1w5s_A Origin recognition comp 97.6 0.0022 7.6E-08 67.1 18.3 93 249-346 125-229 (412)
142 1sxj_C Activator 1 40 kDa subu 97.6 5.5E-05 1.9E-09 78.6 5.8 49 524-585 23-71 (340)
143 1jr3_A DNA polymerase III subu 97.5 6.6E-05 2.3E-09 77.9 5.7 52 523-586 13-64 (373)
144 1a5t_A Delta prime, HOLB; zinc 97.5 0.0021 7.1E-08 66.8 16.4 74 263-345 107-180 (334)
145 1in4_A RUVB, holliday junction 97.5 0.0046 1.6E-07 64.2 18.7 132 264-430 102-251 (334)
146 1ojl_A Transcriptional regulat 97.5 6.6E-05 2.3E-09 77.4 4.4 57 527-594 3-62 (304)
147 3f9v_A Minichromosome maintena 97.4 0.00021 7.2E-09 80.6 8.5 155 264-431 391-589 (595)
148 1sxj_E Activator 1 40 kDa subu 97.4 7.7E-05 2.6E-09 77.2 4.2 51 522-584 10-60 (354)
149 3cmw_A Protein RECA, recombina 97.4 0.00032 1.1E-08 87.2 10.2 71 59-131 1013-1109(1706)
150 2z4s_A Chromosomal replication 97.4 0.00016 5.4E-09 78.5 6.5 57 521-589 100-164 (440)
151 1fnn_A CDC6P, cell division co 97.4 0.00023 8E-09 73.9 7.4 57 525-590 16-78 (389)
152 2qby_A CDC6 homolog 1, cell di 97.3 0.00013 4.4E-09 75.5 4.7 57 524-589 18-80 (386)
153 2qgz_A Helicase loader, putati 97.3 0.00016 5.6E-09 74.7 5.1 26 560-585 152-177 (308)
154 1u0j_A DNA replication protein 97.3 0.00013 4.3E-09 74.6 3.6 27 558-584 102-128 (267)
155 1sxj_C Activator 1 40 kDa subu 97.2 0.0046 1.6E-07 64.0 15.3 73 264-345 110-182 (340)
156 1tue_A Replication protein E1; 97.2 0.0001 3.5E-09 72.6 2.5 33 557-589 55-87 (212)
157 3nbx_X ATPase RAVA; AAA+ ATPas 97.2 0.00018 6E-09 79.7 4.4 45 527-586 23-67 (500)
158 3co5_A Putative two-component 97.2 0.00085 2.9E-08 61.0 8.2 37 104-141 27-63 (143)
159 2gno_A DNA polymerase III, gam 97.1 0.0038 1.3E-07 64.5 13.2 70 265-345 83-152 (305)
160 3vkg_A Dynein heavy chain, cyt 97.1 0.019 6.5E-07 75.3 22.3 83 264-347 1374-1471(3245)
161 3vaa_A Shikimate kinase, SK; s 97.1 0.00022 7.5E-09 68.3 3.4 32 558-589 23-54 (199)
162 2gno_A DNA polymerase III, gam 97.1 0.00032 1.1E-08 72.6 4.8 69 530-612 1-75 (305)
163 3n70_A Transport activator; si 97.1 0.0004 1.4E-08 63.3 4.8 38 102-140 22-62 (145)
164 3f9v_A Minichromosome maintena 97.0 0.0002 6.8E-09 80.8 1.9 61 527-589 296-356 (595)
165 1ojl_A Transcriptional regulat 96.9 0.002 6.7E-08 66.4 8.6 40 102-141 23-65 (304)
166 3iij_A Coilin-interacting nucl 96.8 0.00055 1.9E-08 64.0 3.4 30 560-589 11-40 (180)
167 2cdn_A Adenylate kinase; phosp 96.8 0.00064 2.2E-08 64.8 3.5 30 560-589 20-49 (201)
168 1zuh_A Shikimate kinase; alpha 96.8 0.00059 2E-08 63.1 2.9 29 561-589 8-36 (168)
169 3vlf_B 26S protease regulatory 96.7 0.0017 5.8E-08 55.0 5.3 71 333-430 2-72 (88)
170 3aji_B S6C, proteasome (prosom 96.7 0.0024 8.1E-08 53.1 6.2 71 333-430 2-72 (83)
171 3k1j_A LON protease, ATP-depen 96.7 0.001 3.5E-08 74.9 5.0 51 522-587 37-87 (604)
172 1svm_A Large T antigen; AAA+ f 96.7 0.00068 2.3E-08 72.4 3.2 36 555-590 164-199 (377)
173 1y63_A LMAJ004144AAA protein; 96.7 0.0007 2.4E-08 64.0 2.9 30 560-589 10-40 (184)
174 1a5t_A Delta prime, HOLB; zinc 96.6 0.0017 5.7E-08 67.6 5.6 44 532-587 8-51 (334)
175 3ec2_A DNA replication protein 96.6 0.0059 2E-07 57.0 8.7 70 61-141 5-79 (180)
176 2c95_A Adenylate kinase 1; tra 96.6 0.00092 3.2E-08 62.8 3.0 30 560-589 9-38 (196)
177 3umf_A Adenylate kinase; rossm 96.5 0.001 3.5E-08 65.7 3.1 33 557-589 26-58 (217)
178 2fna_A Conserved hypothetical 96.5 0.0091 3.1E-07 60.7 10.4 95 250-346 124-223 (357)
179 1ak2_A Adenylate kinase isoenz 96.5 0.0012 4.1E-08 64.8 3.2 30 561-590 17-46 (233)
180 1zd8_A GTP:AMP phosphotransfer 96.5 0.00097 3.3E-08 65.0 2.5 31 560-590 7-37 (227)
181 3t61_A Gluconokinase; PSI-biol 96.5 0.0015 5E-08 62.3 3.5 30 560-589 18-47 (202)
182 2bwj_A Adenylate kinase 5; pho 96.4 0.0012 4E-08 62.2 2.8 29 561-589 13-41 (199)
183 2kjq_A DNAA-related protein; s 96.4 0.0016 5.6E-08 60.0 3.5 26 559-584 35-60 (149)
184 3tlx_A Adenylate kinase 2; str 96.3 0.0016 5.6E-08 64.6 2.9 31 559-589 28-58 (243)
185 1knq_A Gluconate kinase; ALFA/ 96.3 0.0016 5.6E-08 60.4 2.7 29 561-589 9-37 (175)
186 1gvn_B Zeta; postsegregational 96.3 0.0032 1.1E-07 64.3 5.1 31 559-589 32-64 (287)
187 1ukz_A Uridylate kinase; trans 96.3 0.0016 5.5E-08 61.9 2.7 30 560-589 15-44 (203)
188 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.001 3.5E-08 69.8 1.3 32 556-587 119-150 (331)
189 4eun_A Thermoresistant glucoki 96.2 0.0022 7.6E-08 61.3 3.2 30 560-589 29-58 (200)
190 1w5s_A Origin recognition comp 96.2 0.0026 9E-08 66.6 3.8 53 525-584 21-76 (412)
191 1zp6_A Hypothetical protein AT 96.1 0.0021 7.1E-08 60.3 2.4 33 557-589 6-38 (191)
192 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0035 1.2E-07 66.4 4.1 29 561-589 25-53 (359)
193 2bbw_A Adenylate kinase 4, AK4 95.9 0.0036 1.2E-07 61.7 3.2 30 560-589 27-56 (246)
194 1nn5_A Similar to deoxythymidy 95.9 0.0029 1E-07 60.2 2.3 30 560-589 9-38 (215)
195 2dzn_B 26S protease regulatory 95.9 0.0073 2.5E-07 50.2 4.4 68 335-429 1-68 (82)
196 2qen_A Walker-type ATPase; unk 95.7 0.053 1.8E-06 54.9 10.9 81 264-345 128-216 (350)
197 2p5t_B PEZT; postsegregational 95.6 0.0042 1.4E-07 61.9 2.5 30 558-587 30-59 (253)
198 2wwf_A Thymidilate kinase, put 95.6 0.0032 1.1E-07 59.9 1.5 30 560-589 10-39 (212)
199 1uf9_A TT1252 protein; P-loop, 95.6 0.0052 1.8E-07 57.9 2.8 29 560-589 8-36 (203)
200 3nwj_A ATSK2; P loop, shikimat 95.6 0.0054 1.9E-07 61.7 3.1 29 561-589 49-77 (250)
201 3r20_A Cytidylate kinase; stru 95.6 0.0053 1.8E-07 61.3 2.9 30 560-589 9-38 (233)
202 2grj_A Dephospho-COA kinase; T 95.4 0.0063 2.2E-07 58.7 2.7 29 561-589 13-41 (192)
203 1q3t_A Cytidylate kinase; nucl 95.2 0.0089 3E-07 58.6 3.2 30 560-589 16-45 (236)
204 3uie_A Adenylyl-sulfate kinase 95.2 0.0098 3.4E-07 56.7 3.2 26 559-584 24-49 (200)
205 2fna_A Conserved hypothetical 95.1 0.021 7.2E-07 58.0 5.6 49 524-589 11-59 (357)
206 2qen_A Walker-type ATPase; unk 95.1 0.017 5.8E-07 58.6 4.9 47 524-585 10-56 (350)
207 4e22_A Cytidylate kinase; P-lo 95.0 0.011 3.7E-07 59.0 3.2 29 561-589 28-56 (252)
208 2qt1_A Nicotinamide riboside k 95.0 0.0077 2.6E-07 57.5 1.8 30 560-589 21-51 (207)
209 3cmu_A Protein RECA, recombina 95.0 0.0074 2.5E-07 76.2 2.1 33 555-587 1422-1454(2050)
210 2qor_A Guanylate kinase; phosp 94.9 0.011 3.9E-07 56.4 3.0 28 558-585 10-37 (204)
211 3zvl_A Bifunctional polynucleo 94.9 0.01 3.5E-07 63.8 2.8 31 559-589 257-287 (416)
212 2cvh_A DNA repair and recombin 94.8 0.017 5.7E-07 55.0 3.7 34 556-589 16-49 (220)
213 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.01 3.5E-07 56.6 2.1 29 556-584 19-47 (235)
214 2f6r_A COA synthase, bifunctio 94.7 0.013 4.4E-07 59.6 2.6 28 561-589 76-103 (281)
215 2w58_A DNAI, primosome compone 94.6 0.024 8.2E-07 53.6 4.3 89 47-144 6-97 (202)
216 1uj2_A Uridine-cytidine kinase 94.6 0.013 4.4E-07 58.1 2.4 28 561-588 23-50 (252)
217 1n0w_A DNA repair protein RAD5 94.5 0.015 5E-07 56.3 2.6 29 555-583 19-47 (243)
218 2kjq_A DNAA-related protein; s 94.5 0.13 4.5E-06 47.1 8.7 35 103-137 35-72 (149)
219 2yvu_A Probable adenylyl-sulfa 94.2 0.019 6.6E-07 53.7 2.6 26 560-585 13-38 (186)
220 2ehv_A Hypothetical protein PH 94.2 0.018 6.3E-07 55.7 2.6 26 556-581 26-51 (251)
221 3gmt_A Adenylate kinase; ssgci 94.2 0.019 6.6E-07 57.2 2.6 29 562-590 10-38 (230)
222 1m7g_A Adenylylsulfate kinase; 94.2 0.015 5E-07 55.9 1.7 26 560-585 25-50 (211)
223 3k1j_A LON protease, ATP-depen 94.1 0.28 9.4E-06 55.1 12.0 26 105-130 61-86 (604)
224 3tau_A Guanylate kinase, GMP k 94.0 0.03 1E-06 53.9 3.5 26 560-585 8-33 (208)
225 2dr3_A UPF0273 protein PH0284; 94.0 0.018 6.3E-07 55.6 2.0 29 555-583 18-46 (247)
226 1rz3_A Hypothetical protein rb 94.0 0.057 2E-06 51.5 5.4 30 560-589 22-54 (201)
227 3a8t_A Adenylate isopentenyltr 93.9 0.016 5.6E-07 60.9 1.6 29 561-589 41-69 (339)
228 4eaq_A DTMP kinase, thymidylat 93.9 0.048 1.6E-06 53.6 4.7 30 560-589 26-57 (229)
229 3hdt_A Putative kinase; struct 93.9 0.024 8.2E-07 56.0 2.6 28 562-589 16-43 (223)
230 4a74_A DNA repair and recombin 93.8 0.02 6.9E-07 54.7 1.8 29 556-584 21-49 (231)
231 2qmh_A HPR kinase/phosphorylas 93.7 0.025 8.7E-07 55.3 2.5 29 560-589 34-62 (205)
232 3tr0_A Guanylate kinase, GMP k 93.7 0.028 9.5E-07 53.0 2.7 24 561-584 8-31 (205)
233 3upu_A ATP-dependent DNA helic 93.7 0.05 1.7E-06 58.9 4.9 23 562-584 47-69 (459)
234 3foz_A TRNA delta(2)-isopenten 93.3 0.03 1E-06 58.3 2.4 30 560-589 10-39 (316)
235 3hr8_A Protein RECA; alpha and 93.3 0.027 9.4E-07 59.5 2.0 30 555-584 56-85 (356)
236 2zts_A Putative uncharacterize 93.3 0.034 1.2E-06 53.7 2.6 29 555-583 25-53 (251)
237 3d3q_A TRNA delta(2)-isopenten 93.2 0.03 1E-06 58.9 2.1 29 561-589 8-36 (340)
238 4b3f_X DNA-binding protein smu 93.2 0.1 3.5E-06 59.0 6.6 38 529-581 189-226 (646)
239 3c8u_A Fructokinase; YP_612366 93.2 0.042 1.4E-06 52.6 2.9 27 559-585 21-47 (208)
240 2zr9_A Protein RECA, recombina 93.0 0.035 1.2E-06 58.3 2.4 30 555-584 56-85 (349)
241 2z43_A DNA repair and recombin 93.0 0.039 1.3E-06 57.0 2.7 30 555-584 102-131 (324)
242 1nlf_A Regulatory protein REPA 93.0 0.031 1.1E-06 56.1 1.8 29 556-584 26-54 (279)
243 1cr0_A DNA primase/helicase; R 93.0 0.041 1.4E-06 55.6 2.7 30 555-584 30-59 (296)
244 3v9p_A DTMP kinase, thymidylat 92.9 0.088 3E-06 52.1 4.9 24 561-584 26-49 (227)
245 1v5w_A DMC1, meiotic recombina 92.9 0.053 1.8E-06 56.6 3.4 30 555-584 117-146 (343)
246 1u94_A RECA protein, recombina 92.8 0.046 1.6E-06 57.7 2.8 30 555-584 58-87 (356)
247 1p5z_B DCK, deoxycytidine kina 92.7 0.036 1.2E-06 55.1 1.7 30 560-589 24-54 (263)
248 2jeo_A Uridine-cytidine kinase 92.6 0.046 1.6E-06 53.8 2.4 26 562-587 27-52 (245)
249 3b9q_A Chloroplast SRP recepto 92.5 0.079 2.7E-06 54.5 4.0 27 558-584 98-124 (302)
250 3ney_A 55 kDa erythrocyte memb 92.4 0.079 2.7E-06 51.4 3.7 26 560-585 19-44 (197)
251 2axn_A 6-phosphofructo-2-kinas 92.4 0.033 1.1E-06 61.7 1.1 29 561-589 36-64 (520)
252 2i1q_A DNA repair and recombin 92.3 0.05 1.7E-06 55.8 2.3 30 555-584 93-122 (322)
253 1znw_A Guanylate kinase, GMP k 92.3 0.055 1.9E-06 51.8 2.4 27 558-584 18-44 (207)
254 1z6g_A Guanylate kinase; struc 92.2 0.056 1.9E-06 52.5 2.4 28 557-584 20-47 (218)
255 1vma_A Cell division protein F 92.2 0.085 2.9E-06 54.5 3.9 27 558-584 102-128 (306)
256 4gp7_A Metallophosphoesterase; 92.2 0.046 1.6E-06 50.9 1.7 21 560-580 9-29 (171)
257 3f8t_A Predicted ATPase involv 92.2 2.6 9E-05 46.3 15.7 154 265-431 301-485 (506)
258 2eyu_A Twitching motility prot 92.1 0.054 1.9E-06 54.5 2.3 27 558-584 23-49 (261)
259 3cmu_A Protein RECA, recombina 92.0 0.03 1E-06 70.8 0.3 65 521-585 673-757 (2050)
260 1xp8_A RECA protein, recombina 92.0 0.049 1.7E-06 57.7 1.9 30 555-584 69-98 (366)
261 1pzn_A RAD51, DNA repair and r 91.9 0.048 1.7E-06 57.2 1.6 30 555-584 126-155 (349)
262 2og2_A Putative signal recogni 91.8 0.1 3.5E-06 55.2 4.0 28 557-584 154-181 (359)
263 1p9r_A General secretion pathw 91.8 0.18 6.1E-06 54.4 5.9 49 522-585 143-192 (418)
264 1x6v_B Bifunctional 3'-phospho 91.7 0.071 2.4E-06 60.5 2.9 29 561-589 53-84 (630)
265 1htw_A HI0065; nucleotide-bind 91.6 0.075 2.6E-06 49.5 2.5 27 558-584 31-57 (158)
266 3e1s_A Exodeoxyribonuclease V, 91.5 0.058 2E-06 60.4 1.8 24 561-584 205-228 (574)
267 3lnc_A Guanylate kinase, GMP k 91.4 0.059 2E-06 52.3 1.6 26 559-584 26-52 (231)
268 1odf_A YGR205W, hypothetical 3 91.2 0.16 5.4E-06 51.9 4.6 27 559-585 30-56 (290)
269 1ny5_A Transcriptional regulat 91.2 0.16 5.4E-06 53.9 4.7 34 561-594 161-197 (387)
270 2px0_A Flagellar biosynthesis 91.1 0.21 7.2E-06 51.2 5.4 26 559-584 104-129 (296)
271 2v9p_A Replication protein E1; 91.1 0.099 3.4E-06 54.1 2.9 29 556-584 122-150 (305)
272 2ewv_A Twitching motility prot 91.1 0.063 2.2E-06 56.8 1.5 28 557-584 133-160 (372)
273 3bh0_A DNAB-like replicative h 91.1 0.098 3.4E-06 53.8 2.9 30 555-584 63-92 (315)
274 1bif_A 6-phosphofructo-2-kinas 91.0 0.057 1.9E-06 58.7 1.1 30 560-589 39-68 (469)
275 3lda_A DNA repair protein RAD5 90.9 0.095 3.3E-06 56.2 2.7 29 555-583 173-201 (400)
276 1z6t_A APAF-1, apoptotic prote 90.8 0.17 5.7E-06 55.9 4.6 47 526-583 124-170 (591)
277 3tqf_A HPR(Ser) kinase; transf 90.6 0.095 3.3E-06 50.3 2.1 29 560-589 16-44 (181)
278 2ged_A SR-beta, signal recogni 90.6 0.17 5.9E-06 46.7 3.9 26 559-584 47-72 (193)
279 3jvv_A Twitching mobility prot 90.6 0.068 2.3E-06 56.4 1.2 23 562-584 125-147 (356)
280 2yhs_A FTSY, cell division pro 90.6 0.13 4.4E-06 56.8 3.4 27 558-584 291-317 (503)
281 2qgz_A Helicase loader, putati 90.4 0.15 5.1E-06 52.4 3.6 73 61-144 119-196 (308)
282 4a1f_A DNAB helicase, replicat 90.4 0.26 8.8E-06 51.7 5.4 35 555-589 41-78 (338)
283 3kl4_A SRP54, signal recogniti 90.3 0.14 4.8E-06 55.5 3.4 26 559-584 96-121 (433)
284 3dm5_A SRP54, signal recogniti 90.3 0.17 5.7E-06 55.1 3.9 26 559-584 99-124 (443)
285 1s96_A Guanylate kinase, GMP k 90.2 0.12 4.3E-06 50.5 2.6 28 558-585 14-41 (219)
286 3io5_A Recombination and repai 90.1 0.11 3.7E-06 54.4 2.2 29 555-584 24-52 (333)
287 1g8f_A Sulfate adenylyltransfe 90.0 0.11 3.8E-06 57.4 2.3 26 561-586 396-421 (511)
288 2gk6_A Regulator of nonsense t 89.9 0.11 3.8E-06 58.5 2.3 22 562-583 197-218 (624)
289 2q6t_A DNAB replication FORK h 89.7 0.15 5.3E-06 54.9 3.1 29 555-583 195-223 (444)
290 2r6a_A DNAB helicase, replicat 89.6 0.15 5.1E-06 55.1 2.9 30 555-584 198-227 (454)
291 3tqc_A Pantothenate kinase; bi 89.6 0.19 6.6E-06 52.3 3.6 26 560-585 92-117 (321)
292 1np6_A Molybdopterin-guanine d 89.4 0.17 5.7E-06 47.9 2.7 25 560-584 6-30 (174)
293 1zu4_A FTSY; GTPase, signal re 89.4 0.16 5.5E-06 52.7 2.8 27 558-584 103-129 (320)
294 3ld9_A DTMP kinase, thymidylat 89.3 0.19 6.5E-06 49.6 3.2 26 561-586 22-47 (223)
295 1rj9_A FTSY, signal recognitio 89.3 0.16 5.5E-06 52.3 2.7 25 560-584 102-126 (304)
296 3aez_A Pantothenate kinase; tr 89.3 0.16 5.5E-06 52.5 2.7 28 558-585 88-115 (312)
297 3trf_A Shikimate kinase, SK; a 89.2 0.18 6.1E-06 46.7 2.7 34 104-137 5-38 (185)
298 3b85_A Phosphate starvation-in 89.1 0.16 5.3E-06 49.4 2.3 22 562-583 24-45 (208)
299 2v3c_C SRP54, signal recogniti 88.9 0.18 6.2E-06 54.6 2.8 25 560-584 99-123 (432)
300 3kta_A Chromosome segregation 88.8 0.16 5.6E-06 46.9 2.2 24 562-585 28-51 (182)
301 4i1u_A Dephospho-COA kinase; s 88.4 0.2 7E-06 49.0 2.6 28 561-589 10-37 (210)
302 1sq5_A Pantothenate kinase; P- 88.4 0.17 5.9E-06 51.7 2.2 25 561-585 81-105 (308)
303 3vkg_A Dynein heavy chain, cyt 88.3 0.32 1.1E-05 64.2 5.0 48 560-609 604-651 (3245)
304 2cbz_A Multidrug resistance-as 88.1 0.17 5.8E-06 50.0 1.8 28 557-584 28-55 (237)
305 3e70_C DPA, signal recognition 88.0 0.21 7.1E-06 52.1 2.5 27 558-584 127-153 (328)
306 3tif_A Uncharacterized ABC tra 88.0 0.17 5.9E-06 49.9 1.8 27 558-584 29-55 (235)
307 1w36_D RECD, exodeoxyribonucle 87.9 0.19 6.4E-06 56.6 2.3 24 561-584 165-188 (608)
308 1oix_A RAS-related protein RAB 87.9 0.18 6.3E-06 47.1 1.9 23 562-584 31-53 (191)
309 1xjc_A MOBB protein homolog; s 87.8 0.21 7.3E-06 47.2 2.3 24 561-584 5-28 (169)
310 2onk_A Molybdate/tungstate ABC 87.8 0.19 6.4E-06 49.9 2.0 27 557-584 22-48 (240)
311 2dyk_A GTP-binding protein; GT 87.8 0.21 7.1E-06 44.3 2.1 23 562-584 3-25 (161)
312 2pcj_A ABC transporter, lipopr 87.8 0.15 5.2E-06 49.9 1.2 26 559-584 29-54 (224)
313 1qhx_A CPT, protein (chloramph 87.7 0.27 9.3E-06 45.0 2.9 36 105-140 4-39 (178)
314 2p5s_A RAS and EF-hand domain 87.7 0.2 6.8E-06 46.9 2.0 26 558-583 26-51 (199)
315 1m8p_A Sulfate adenylyltransfe 87.7 0.2 6.9E-06 56.1 2.3 29 561-589 397-429 (573)
316 1b0u_A Histidine permease; ABC 87.6 0.19 6.5E-06 50.4 1.9 27 558-584 30-56 (262)
317 2wjy_A Regulator of nonsense t 87.5 0.2 7E-06 58.3 2.3 22 562-583 373-394 (800)
318 2a5y_B CED-4; apoptosis; HET: 87.4 0.34 1.2E-05 53.5 4.0 43 530-582 132-174 (549)
319 1nrj_B SR-beta, signal recogni 87.4 0.26 8.8E-06 46.6 2.6 25 560-584 12-36 (218)
320 3dzd_A Transcriptional regulat 87.3 0.38 1.3E-05 50.7 4.1 34 561-594 153-188 (368)
321 1z2a_A RAS-related protein RAB 87.3 0.23 7.8E-06 44.3 2.0 23 561-583 6-28 (168)
322 2ce2_X GTPase HRAS; signaling 87.1 0.22 7.5E-06 43.9 1.8 23 562-584 5-27 (166)
323 1kao_A RAP2A; GTP-binding prot 87.0 0.24 8.4E-06 43.8 2.1 22 562-583 5-26 (167)
324 3fvq_A Fe(3+) IONS import ATP- 87.0 0.21 7.2E-06 52.8 1.9 26 559-584 29-54 (359)
325 2gxq_A Heat resistant RNA depe 86.9 0.21 7.3E-06 46.8 1.7 52 524-578 2-56 (207)
326 3f8t_A Predicted ATPase involv 86.8 0.24 8.1E-06 54.5 2.2 48 528-584 215-263 (506)
327 3lv8_A DTMP kinase, thymidylat 86.8 0.24 8.3E-06 49.2 2.1 25 561-585 28-52 (236)
328 1pui_A ENGB, probable GTP-bind 86.8 0.23 7.8E-06 46.6 1.8 28 557-584 23-50 (210)
329 1mv5_A LMRA, multidrug resista 86.8 0.21 7.1E-06 49.5 1.6 27 558-584 26-52 (243)
330 2ghi_A Transport protein; mult 86.6 0.23 7.9E-06 49.8 1.8 28 557-584 43-70 (260)
331 2zu0_C Probable ATP-dependent 86.5 0.25 8.6E-06 49.7 2.1 26 558-583 44-69 (267)
332 2olj_A Amino acid ABC transpor 86.5 0.24 8.1E-06 50.0 1.9 27 558-584 48-74 (263)
333 1u8z_A RAS-related protein RAL 86.5 0.27 9.1E-06 43.6 2.0 23 561-583 5-27 (168)
334 1lw7_A Transcriptional regulat 86.4 0.22 7.7E-06 52.0 1.7 28 560-587 170-197 (365)
335 2b8t_A Thymidine kinase; deoxy 86.4 0.28 9.4E-06 48.4 2.3 23 562-584 14-36 (223)
336 2ixe_A Antigen peptide transpo 86.4 0.24 8.1E-06 50.1 1.8 28 557-584 42-69 (271)
337 2fz4_A DNA repair protein RAD2 86.4 0.3 1E-05 47.9 2.5 28 562-589 110-137 (237)
338 1z47_A CYSA, putative ABC-tran 86.4 0.24 8.2E-06 52.3 1.9 25 560-584 41-65 (355)
339 2it1_A 362AA long hypothetical 86.3 0.26 8.7E-06 52.2 2.1 26 559-584 28-53 (362)
340 3sfz_A APAF-1, apoptotic pepti 86.3 0.64 2.2E-05 55.2 5.8 47 526-583 124-170 (1249)
341 2yyz_A Sugar ABC transporter, 86.3 0.25 8.7E-06 52.1 2.0 26 559-584 28-53 (359)
342 1sgw_A Putative ABC transporte 86.2 0.22 7.5E-06 48.7 1.4 26 559-584 34-59 (214)
343 1g6h_A High-affinity branched- 86.2 0.21 7.3E-06 49.9 1.3 25 560-584 33-57 (257)
344 3rlf_A Maltose/maltodextrin im 86.2 0.26 9E-06 52.5 2.1 26 559-584 28-53 (381)
345 2pze_A Cystic fibrosis transme 86.1 0.22 7.5E-06 48.9 1.4 27 558-584 32-58 (229)
346 3bgw_A DNAB-like replicative h 86.1 0.3 1E-05 52.9 2.5 34 556-589 193-229 (444)
347 1ji0_A ABC transporter; ATP bi 86.1 0.24 8.2E-06 48.9 1.7 25 560-584 32-56 (240)
348 2oap_1 GSPE-2, type II secreti 86.1 0.27 9.1E-06 54.4 2.1 26 560-585 260-285 (511)
349 1qde_A EIF4A, translation init 86.1 0.32 1.1E-05 46.4 2.4 53 522-577 13-68 (224)
350 1z0j_A RAB-22, RAS-related pro 86.1 0.29 1E-05 43.6 2.1 24 561-584 7-30 (170)
351 1v43_A Sugar-binding transport 86.0 0.27 9.2E-06 52.2 2.1 27 558-584 35-61 (372)
352 2d2e_A SUFC protein; ABC-ATPas 86.0 0.26 8.9E-06 49.0 1.9 25 559-583 28-52 (250)
353 1wms_A RAB-9, RAB9, RAS-relate 86.0 0.29 1E-05 44.1 2.1 23 561-583 8-30 (177)
354 3gfo_A Cobalt import ATP-bindi 86.0 0.25 8.4E-06 50.2 1.7 25 560-584 34-58 (275)
355 2wji_A Ferrous iron transport 86.0 0.28 9.5E-06 44.5 1.9 22 562-583 5-26 (165)
356 2ff7_A Alpha-hemolysin translo 85.9 0.22 7.6E-06 49.5 1.3 27 558-584 33-59 (247)
357 2xzl_A ATP-dependent helicase 85.9 0.27 9.3E-06 57.2 2.2 21 562-582 377-397 (802)
358 1z08_A RAS-related protein RAB 85.8 0.31 1.1E-05 43.5 2.1 23 561-583 7-29 (170)
359 2iyv_A Shikimate kinase, SK; t 85.8 0.38 1.3E-05 44.4 2.8 32 105-136 3-34 (184)
360 1g29_1 MALK, maltose transport 85.8 0.27 9.1E-06 52.2 1.9 25 560-584 29-53 (372)
361 1ky3_A GTP-binding protein YPT 85.7 0.31 1.1E-05 44.0 2.1 24 560-583 8-31 (182)
362 4g1u_C Hemin import ATP-bindin 85.7 0.27 9.1E-06 49.6 1.8 27 558-584 35-61 (266)
363 2yz2_A Putative ABC transporte 85.7 0.27 9.3E-06 49.4 1.8 27 558-584 31-57 (266)
364 1vpl_A ABC transporter, ATP-bi 85.6 0.28 9.7E-06 49.1 1.9 27 558-584 39-65 (256)
365 1via_A Shikimate kinase; struc 85.5 0.4 1.4E-05 44.1 2.7 31 106-136 6-36 (175)
366 1tf7_A KAIC; homohexamer, hexa 85.5 0.27 9.1E-06 54.2 1.8 29 556-584 277-305 (525)
367 1r2q_A RAS-related protein RAB 85.4 0.32 1.1E-05 43.2 2.0 23 561-583 7-29 (170)
368 2wjg_A FEOB, ferrous iron tran 85.4 0.3 1E-05 44.7 1.8 23 561-583 8-30 (188)
369 3bc1_A RAS-related protein RAB 85.3 0.32 1.1E-05 44.3 2.0 23 561-583 12-34 (195)
370 1q57_A DNA primase/helicase; d 85.3 0.25 8.7E-06 53.9 1.5 29 556-584 238-266 (503)
371 3vaa_A Shikimate kinase, SK; s 85.3 0.41 1.4E-05 45.2 2.8 34 104-137 25-58 (199)
372 3iij_A Coilin-interacting nucl 85.3 0.44 1.5E-05 43.9 2.9 33 104-136 11-43 (180)
373 2qi9_C Vitamin B12 import ATP- 85.2 0.26 8.8E-06 49.2 1.4 26 559-584 25-50 (249)
374 1j8m_F SRP54, signal recogniti 85.2 0.61 2.1E-05 47.7 4.2 25 560-584 98-122 (297)
375 2hf9_A Probable hydrogenase ni 85.2 0.59 2E-05 44.4 3.9 24 561-584 39-62 (226)
376 2lkc_A Translation initiation 85.1 0.41 1.4E-05 43.2 2.6 24 560-583 8-31 (178)
377 3crm_A TRNA delta(2)-isopenten 85.1 0.49 1.7E-05 49.3 3.5 38 104-141 5-42 (323)
378 2ze6_A Isopentenyl transferase 85.1 0.46 1.6E-05 47.1 3.2 34 106-139 3-36 (253)
379 2gza_A Type IV secretion syste 85.1 0.23 7.7E-06 52.2 0.9 28 558-585 173-200 (361)
380 3cr8_A Sulfate adenylyltranfer 85.1 0.19 6.5E-06 56.1 0.3 26 560-585 369-394 (552)
381 2wsm_A Hydrogenase expression/ 85.0 0.36 1.2E-05 45.8 2.3 25 561-585 31-55 (221)
382 1c1y_A RAS-related protein RAP 85.0 0.35 1.2E-05 43.0 2.0 22 562-583 5-26 (167)
383 2ihy_A ABC transporter, ATP-bi 84.9 0.27 9.1E-06 50.0 1.4 26 559-584 46-71 (279)
384 1upt_A ARL1, ADP-ribosylation 84.9 0.39 1.3E-05 42.9 2.3 24 560-583 7-30 (171)
385 2pt7_A CAG-ALFA; ATPase, prote 84.9 0.32 1.1E-05 50.5 2.0 25 561-585 172-196 (330)
386 1ny5_A Transcriptional regulat 84.8 4.6 0.00016 42.5 10.9 43 100-142 156-201 (387)
387 3d31_A Sulfate/molybdate ABC t 84.8 0.23 7.7E-06 52.3 0.8 27 558-584 24-50 (348)
388 2cdn_A Adenylate kinase; phosp 84.7 0.53 1.8E-05 44.2 3.2 33 104-136 20-52 (201)
389 2y8e_A RAB-protein 6, GH09086P 84.6 0.34 1.2E-05 43.5 1.8 23 561-583 15-37 (179)
390 2ffh_A Protein (FFH); SRP54, s 84.6 0.7 2.4E-05 49.9 4.5 26 559-584 97-122 (425)
391 3tw8_B RAS-related protein RAB 84.6 0.35 1.2E-05 43.6 1.8 24 560-583 9-32 (181)
392 2nq2_C Hypothetical ABC transp 84.6 0.28 9.5E-06 49.0 1.3 26 559-584 30-55 (253)
393 3con_A GTPase NRAS; structural 84.6 0.37 1.3E-05 44.3 2.0 23 561-583 22-44 (190)
394 2a9k_A RAS-related protein RAL 84.4 0.38 1.3E-05 43.6 2.0 23 561-583 19-41 (187)
395 3clv_A RAB5 protein, putative; 84.3 0.39 1.3E-05 43.9 2.1 24 560-583 7-30 (208)
396 1tf7_A KAIC; homohexamer, hexa 84.2 0.31 1.1E-05 53.6 1.6 25 556-580 35-59 (525)
397 2pjz_A Hypothetical protein ST 84.2 0.34 1.2E-05 48.8 1.7 25 560-584 30-54 (263)
398 3gd7_A Fusion complex of cysti 84.2 0.35 1.2E-05 51.7 1.9 27 557-583 44-70 (390)
399 1z0f_A RAB14, member RAS oncog 84.1 0.4 1.4E-05 43.1 2.0 24 561-584 16-39 (179)
400 2efe_B Small GTP-binding prote 84.1 0.41 1.4E-05 43.3 2.1 23 561-583 13-35 (181)
401 1sky_E F1-ATPase, F1-ATP synth 84.1 0.24 8.2E-06 54.3 0.6 25 561-585 152-176 (473)
402 2fn4_A P23, RAS-related protei 84.0 0.39 1.3E-05 43.3 1.9 23 561-583 10-32 (181)
403 2oil_A CATX-8, RAS-related pro 83.9 0.4 1.4E-05 44.2 2.0 23 561-583 26-48 (193)
404 2j37_W Signal recognition part 83.9 0.54 1.9E-05 51.9 3.4 26 559-584 100-125 (504)
405 3t1o_A Gliding protein MGLA; G 83.9 0.4 1.4E-05 43.9 2.0 24 561-584 15-38 (198)
406 1m7b_A RND3/RHOE small GTP-bin 83.9 0.38 1.3E-05 44.2 1.8 24 560-583 7-30 (184)
407 2vp4_A Deoxynucleoside kinase; 83.7 0.45 1.6E-05 46.2 2.3 23 561-583 21-43 (230)
408 2bme_A RAB4A, RAS-related prot 83.6 0.4 1.4E-05 43.7 1.8 23 561-583 11-33 (186)
409 2b6h_A ADP-ribosylation factor 83.6 0.51 1.7E-05 44.0 2.5 24 559-582 28-51 (192)
410 2atv_A RERG, RAS-like estrogen 83.4 0.46 1.6E-05 44.1 2.2 24 560-583 28-51 (196)
411 2gks_A Bifunctional SAT/APS ki 83.4 0.32 1.1E-05 54.2 1.2 25 561-585 373-397 (546)
412 2bbs_A Cystic fibrosis transme 83.2 0.37 1.3E-05 49.2 1.6 27 558-584 62-88 (290)
413 1svi_A GTP-binding protein YSX 83.2 0.55 1.9E-05 43.1 2.6 24 560-583 23-46 (195)
414 1oxx_K GLCV, glucose, ABC tran 83.1 0.23 8E-06 52.2 0.0 27 558-584 29-55 (353)
415 3kkq_A RAS-related protein M-R 83.1 0.46 1.6E-05 43.2 2.0 23 561-583 19-41 (183)
416 2g6b_A RAS-related protein RAB 83.1 0.46 1.6E-05 42.9 2.0 23 561-583 11-33 (180)
417 3ice_A Transcription terminati 83.0 0.56 1.9E-05 50.4 2.9 27 558-584 172-198 (422)
418 3dzd_A Transcriptional regulat 83.0 8 0.00027 40.4 11.8 40 102-141 150-191 (368)
419 3tkl_A RAS-related protein RAB 83.0 0.47 1.6E-05 43.6 2.0 23 561-583 17-39 (196)
420 2gf9_A RAS-related protein RAB 82.8 0.48 1.6E-05 43.6 2.0 23 561-583 23-45 (189)
421 2dpy_A FLII, flagellum-specifi 82.8 0.55 1.9E-05 50.8 2.8 30 558-587 155-184 (438)
422 3dz8_A RAS-related protein RAB 82.6 0.48 1.7E-05 43.8 2.0 24 561-584 24-47 (191)
423 1vec_A ATP-dependent RNA helic 82.6 0.41 1.4E-05 44.9 1.4 18 561-578 41-58 (206)
424 1x3s_A RAS-related protein RAB 82.5 0.5 1.7E-05 43.3 2.0 23 561-583 16-38 (195)
425 1m2o_B GTP-binding protein SAR 82.5 0.47 1.6E-05 44.2 1.8 23 561-583 24-46 (190)
426 3bwd_D RAC-like GTP-binding pr 82.5 0.5 1.7E-05 42.7 2.0 24 560-583 8-31 (182)
427 3pqc_A Probable GTP-binding pr 82.5 0.41 1.4E-05 43.8 1.4 24 561-584 24-47 (195)
428 1moz_A ARL1, ADP-ribosylation 82.5 0.46 1.6E-05 43.1 1.7 23 560-582 18-40 (183)
429 3foz_A TRNA delta(2)-isopenten 82.3 0.73 2.5E-05 47.9 3.4 38 104-141 10-47 (316)
430 3ihw_A Centg3; RAS, centaurin, 82.3 0.53 1.8E-05 43.6 2.1 23 561-583 21-43 (184)
431 2obl_A ESCN; ATPase, hydrolase 82.3 0.49 1.7E-05 49.6 2.1 27 561-587 72-98 (347)
432 2fu5_C RAS-related protein RAB 82.3 0.42 1.5E-05 43.5 1.4 24 560-583 8-31 (183)
433 1knx_A Probable HPR(Ser) kinas 82.3 0.47 1.6E-05 49.3 1.9 29 560-589 147-175 (312)
434 1ls1_A Signal recognition part 82.2 0.55 1.9E-05 47.9 2.4 26 559-584 97-122 (295)
435 3c5c_A RAS-like protein 12; GD 82.2 0.53 1.8E-05 43.6 2.1 22 562-583 23-44 (187)
436 1ko7_A HPR kinase/phosphatase; 82.1 0.5 1.7E-05 49.0 2.1 29 560-589 144-172 (314)
437 2bov_A RAla, RAS-related prote 82.1 0.52 1.8E-05 43.6 2.0 23 561-583 15-37 (206)
438 2xxa_A Signal recognition part 82.0 0.55 1.9E-05 50.8 2.4 27 558-584 98-124 (433)
439 3b6e_A Interferon-induced heli 82.0 0.59 2E-05 43.7 2.4 24 561-584 49-72 (216)
440 1f2t_A RAD50 ABC-ATPase; DNA d 81.9 0.5 1.7E-05 43.1 1.8 22 563-584 26-47 (149)
441 1zbd_A Rabphilin-3A; G protein 81.9 0.5 1.7E-05 43.9 1.8 25 560-584 8-32 (203)
442 3p32_A Probable GTPase RV1496/ 81.9 0.54 1.9E-05 49.0 2.3 24 561-584 80-103 (355)
443 2iwr_A Centaurin gamma 1; ANK 81.9 0.42 1.4E-05 43.3 1.2 24 560-583 7-30 (178)
444 2qm8_A GTPase/ATPase; G protei 81.9 0.64 2.2E-05 48.3 2.7 24 560-583 55-78 (337)
445 1vg8_A RAS-related protein RAB 81.8 0.55 1.9E-05 43.6 2.1 25 560-584 8-32 (207)
446 1ksh_A ARF-like protein 2; sma 81.8 0.48 1.6E-05 43.3 1.6 25 560-584 18-42 (186)
447 2fg5_A RAB-22B, RAS-related pr 81.8 0.53 1.8E-05 43.6 1.9 23 561-583 24-46 (192)
448 2npi_A Protein CLP1; CLP1-PCF1 81.7 0.57 1.9E-05 51.0 2.4 26 559-584 137-162 (460)
449 1zd9_A ADP-ribosylation factor 81.6 0.56 1.9E-05 43.3 2.0 23 561-583 23-45 (188)
450 1z06_A RAS-related protein RAB 81.5 0.58 2E-05 43.0 2.1 23 561-583 21-43 (189)
451 2pl3_A Probable ATP-dependent 81.4 0.7 2.4E-05 44.4 2.7 54 522-578 24-80 (236)
452 2a5j_A RAS-related protein RAB 81.4 0.58 2E-05 43.2 2.0 23 561-583 22-44 (191)
453 3reg_A RHO-like small GTPase; 81.3 0.58 2E-05 43.2 2.0 23 561-583 24-46 (194)
454 3cph_A RAS-related protein SEC 81.3 0.58 2E-05 43.7 2.0 24 560-583 20-43 (213)
455 3kb2_A SPBC2 prophage-derived 81.2 0.78 2.7E-05 41.3 2.8 32 106-137 3-34 (173)
456 1e6c_A Shikimate kinase; phosp 81.0 0.8 2.7E-05 41.5 2.8 32 105-136 3-34 (173)
457 2bcg_Y Protein YP2, GTP-bindin 81.0 0.57 1.9E-05 43.7 1.8 23 561-583 9-31 (206)
458 1fzq_A ADP-ribosylation factor 81.0 0.48 1.6E-05 43.6 1.3 23 561-583 17-39 (181)
459 3oes_A GTPase rhebl1; small GT 80.7 0.59 2E-05 43.6 1.8 24 560-583 24-47 (201)
460 3bor_A Human initiation factor 80.7 0.38 1.3E-05 46.6 0.5 55 522-579 29-86 (237)
461 2gf0_A GTP-binding protein DI- 80.6 0.61 2.1E-05 42.9 1.9 24 560-583 8-31 (199)
462 1tue_A Replication protein E1; 80.5 0.89 3E-05 44.6 3.1 29 104-132 58-86 (212)
463 1aky_A Adenylate kinase; ATP:A 80.5 0.87 3E-05 43.5 3.0 33 104-136 4-36 (220)
464 3t61_A Gluconokinase; PSI-biol 80.5 1.1 3.6E-05 42.2 3.5 34 104-137 18-51 (202)
465 1gwn_A RHO-related GTP-binding 80.4 0.61 2.1E-05 44.2 1.8 23 561-583 29-51 (205)
466 3nh6_A ATP-binding cassette SU 80.3 0.38 1.3E-05 49.6 0.4 28 557-584 77-104 (306)
467 1u0j_A DNA replication protein 80.2 0.8 2.7E-05 46.5 2.7 29 102-130 102-130 (267)
468 1t6n_A Probable ATP-dependent 80.2 0.57 2E-05 44.5 1.6 59 523-584 14-75 (220)
469 1y63_A LMAJ004144AAA protein; 80.1 0.96 3.3E-05 42.1 3.1 34 103-136 9-43 (184)
470 1f6b_A SAR1; gtpases, N-termin 80.0 0.47 1.6E-05 44.5 0.9 22 561-582 26-47 (198)
471 2fh5_B SR-beta, signal recogni 80.0 0.68 2.3E-05 43.5 2.0 24 560-583 7-30 (214)
472 2rhm_A Putative kinase; P-loop 80.0 0.81 2.8E-05 42.2 2.5 33 104-136 5-37 (193)
473 3tui_C Methionine import ATP-b 80.0 0.66 2.3E-05 49.2 2.1 27 558-584 52-78 (366)
474 2h57_A ADP-ribosylation factor 80.0 0.51 1.7E-05 43.5 1.1 24 561-584 22-45 (190)
475 2ew1_A RAS-related protein RAB 79.8 0.65 2.2E-05 43.9 1.8 23 561-583 27-49 (201)
476 1gvn_B Zeta; postsegregational 79.7 1.7 6E-05 43.9 5.1 60 72-137 7-66 (287)
477 1hv8_A Putative ATP-dependent 79.7 0.57 1.9E-05 47.3 1.4 60 522-584 5-68 (367)
478 1zj6_A ADP-ribosylation factor 79.6 0.63 2.2E-05 42.7 1.6 24 560-583 16-39 (187)
479 2atx_A Small GTP binding prote 79.6 0.69 2.4E-05 42.6 1.9 23 561-583 19-41 (194)
480 1qhl_A Protein (cell division 79.5 0.26 8.9E-06 48.7 -1.1 23 563-585 30-52 (227)
481 3lxx_A GTPase IMAP family memb 79.4 0.68 2.3E-05 44.8 1.8 23 561-583 30-52 (239)
482 3a8t_A Adenylate isopentenyltr 79.3 0.87 3E-05 47.8 2.7 37 105-141 41-77 (339)
483 1yrb_A ATP(GTP)binding protein 79.3 0.77 2.6E-05 44.7 2.2 24 561-584 15-38 (262)
484 2qag_B Septin-6, protein NEDD5 79.2 0.83 2.8E-05 49.4 2.6 21 563-583 45-65 (427)
485 4bas_A ADP-ribosylation factor 79.2 0.71 2.4E-05 42.5 1.8 24 560-583 17-40 (199)
486 3cbq_A GTP-binding protein REM 79.2 0.66 2.3E-05 43.4 1.6 22 561-582 24-45 (195)
487 2o52_A RAS-related protein RAB 79.1 0.62 2.1E-05 43.6 1.4 23 561-583 26-48 (200)
488 1zuh_A Shikimate kinase; alpha 79.1 0.94 3.2E-05 41.1 2.6 32 105-136 8-39 (168)
489 2f7s_A C25KG, RAS-related prot 79.1 0.74 2.5E-05 43.3 1.9 23 561-583 26-48 (217)
490 2bwj_A Adenylate kinase 5; pho 79.1 0.96 3.3E-05 41.9 2.7 32 105-136 13-44 (199)
491 2c95_A Adenylate kinase 1; tra 79.0 1 3.6E-05 41.5 2.9 33 104-136 9-41 (196)
492 1ak2_A Adenylate kinase isoenz 78.9 1.1 3.7E-05 43.4 3.1 34 103-136 15-48 (233)
493 2fv8_A H6, RHO-related GTP-bin 78.8 0.75 2.6E-05 43.2 1.9 23 561-583 26-48 (207)
494 2q3h_A RAS homolog gene family 78.8 0.75 2.6E-05 42.6 1.9 23 561-583 21-43 (201)
495 2yc2_C IFT27, small RAB-relate 78.8 0.48 1.6E-05 43.9 0.5 23 561-583 21-43 (208)
496 2hup_A RAS-related protein RAB 78.6 0.77 2.6E-05 43.1 1.9 23 561-583 30-52 (201)
497 2h17_A ADP-ribosylation factor 78.6 0.6 2.1E-05 42.7 1.1 23 561-583 22-44 (181)
498 1u0l_A Probable GTPase ENGC; p 78.5 0.66 2.3E-05 47.2 1.5 23 562-584 171-193 (301)
499 2qu8_A Putative nucleolar GTP- 78.3 0.7 2.4E-05 44.3 1.5 23 561-583 30-52 (228)
500 2rcn_A Probable GTPase ENGC; Y 78.3 0.76 2.6E-05 48.5 1.9 24 562-585 217-240 (358)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.5e-45 Score=419.46 Aligned_cols=345 Identities=20% Similarity=0.330 Sum_probs=276.5
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
-+|+|+++.++ ++.+..|.+.+..+|+||++++ +--...+++|||+||+++++++||||+|+++|+.++.+|..++
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~--~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGT--SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHHHh--hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 46999999999 9999999999999999999743 3223567889999999999999999999999999999999887
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
..++
T Consensus 275 ~sk~---------------------------------------------------------------------------- 278 (806)
T 3cf2_A 275 MSKL---------------------------------------------------------------------------- 278 (806)
T ss_dssp HSSC----------------------------------------------------------------------------
T ss_pred hccc----------------------------------------------------------------------------
Confidence 5221
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHHHH
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKMMK 292 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~l~ 292 (613)
..+....++.+|+ .+.+++|+||||||+|.+...+ .++.+.|...++
T Consensus 279 ----------------------~gese~~lr~lF~---~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~md 333 (806)
T 3cf2_A 279 ----------------------AGESESNLRKAFE---EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp ----------------------TTHHHHHHHHHHH---HHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHH
T ss_pred ----------------------chHHHHHHHHHHH---HHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHh
Confidence 1112233455554 5677899999999999987653 357788888888
Q ss_pred hhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 007208 293 KLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSAN 368 (613)
Q Consensus 293 ~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~ 368 (613)
.+. ++|+|||+ +++++.+|+++++ +|+.+|+|++|+.++|.+||+.++.. +-...
T Consensus 334 g~~~~~~V~VIaa-----TN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~----------------~~~~~ 392 (806)
T 3cf2_A 334 GLKQRAHVIVMAA-----TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN----------------MKLAD 392 (806)
T ss_dssp HCCGGGCEEEEEE-----CSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS----------------SEECT
T ss_pred cccccCCEEEEEe-----cCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC----------------CCCCc
Confidence 875 56889986 7788999999998 99999999999999999999987532 11235
Q ss_pred CCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCC------ccc---CCCceeechhhHHhhhhhhhccccCCcch
Q 007208 369 DLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNED------TDY---RNGKLIISSKSLSHGLSIFQEGKASGKDT 439 (613)
Q Consensus 369 dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~------~~~---~~~~l~is~~sl~~al~~~q~~~~~~~d~ 439 (613)
+++...|+..|.+ |++++|..+|..|..+++.+..+ ... ....+.++.+||..|+..++
T Consensus 393 dvdl~~lA~~T~G---fsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~--------- 460 (806)
T 3cf2_A 393 DVDLEQVANETHG---HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN--------- 460 (806)
T ss_dssp TCCHHHHHHHCCS---CCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSS---------
T ss_pred ccCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCC---------
Confidence 6777788888888 99999999998887766543211 000 01357899999999996321
Q ss_pred hHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhcCCCCCCCCCCcccccCCCCCCCCchHHhhhcCCCccCC
Q 007208 440 LKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAAAPNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSN 519 (613)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~ 519 (613)
|. .. .. +...
T Consensus 461 ----------------ps---------------------------------------~~--------------r~-~~~~ 470 (806)
T 3cf2_A 461 ----------------PS---------------------------------------AL--------------RE-TVVE 470 (806)
T ss_dssp ----------------CC---------------------------------------CC--------------CC-CCCB
T ss_pred ----------------Cc---------------------------------------cc--------------cc-cccc
Confidence 00 00 00 1223
Q ss_pred CCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec----cCCC
Q 007208 520 EISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS----PCLP 595 (613)
Q Consensus 520 ~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~----v~~~ 595 (613)
.|+++|+||||++++|+.|++.+.+|+++|++|...++.+++|+|||||||||||++|+|+|+++++||+.. +.++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 468999999999999999999999999999999999999999999999999999999999999999999932 3457
Q ss_pred cchHHHHHHHHHHHHhhC
Q 007208 596 SLPNGLVRMRRMFELYSR 613 (613)
Q Consensus 596 ~lge~e~~Ir~IF~~A~r 613 (613)
|+|+++++||++|+.|++
T Consensus 551 ~vGese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQ 568 (806)
T ss_dssp TCSSCHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 899999999999999974
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=3.1e-28 Score=283.65 Aligned_cols=344 Identities=20% Similarity=0.336 Sum_probs=249.5
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
-.|+|+++-.+ +..+..|.+.+..+++++++++.. -......|||+||+++++++||||||++.++.++.++..++
T Consensus 199 ~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l--~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l 274 (806)
T 1ypw_A 199 NEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSS--CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHH
T ss_pred CCCCHHHhCCh--HHHHHHHHHHHHHHhhCHHHHHhc--CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHh
Confidence 35899999999 999999999999999999874322 13456789999999999999999999999999999988666
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
..++
T Consensus 275 ~~~~---------------------------------------------------------------------------- 278 (806)
T 1ypw_A 275 MSKL---------------------------------------------------------------------------- 278 (806)
T ss_dssp SSSS----------------------------------------------------------------------------
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 3110
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHHHH
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKMMK 292 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~l~ 292 (613)
...-...+..+|+ .+....|+||||||+|.++... .++...|..+++
T Consensus 279 ----------------------~g~~~~~l~~vf~---~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 279 ----------------------AGESESNLRKAFE---EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp ----------------------TTHHHHHHHHHHH---HHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred ----------------------hhhHHHHHHHHHH---HHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhh
Confidence 0001112344444 4444589999999999977542 345666667777
Q ss_pred hhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 007208 293 KLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSAN 368 (613)
Q Consensus 293 ~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~ 368 (613)
.+. ..|+++++ ++++..+++.+.+ +|...+.|++|+.++|++||+.++.. +....
T Consensus 334 g~~~~~~v~vI~a-----tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~----------------~~l~~ 392 (806)
T 1ypw_A 334 GLKQRAHVIVMAA-----TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN----------------MKLAD 392 (806)
T ss_dssp SSCTTSCCEEEEE-----CSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT----------------SCCCT
T ss_pred hhcccccEEEecc-----cCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc----------------CCCcc
Confidence 554 35677775 5566778888888 99999999999999999999866421 11123
Q ss_pred CCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcc-c--------CCCceeechhhHHhhhhhhhccccCCcch
Q 007208 369 DLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTD-Y--------RNGKLIISSKSLSHGLSIFQEGKASGKDT 439 (613)
Q Consensus 369 dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~-~--------~~~~l~is~~sl~~al~~~q~~~~~~~d~ 439 (613)
+.+...++..+.+ ++++++..++..|...++....... . ....+.++.+++..++...+.
T Consensus 393 ~~~l~~la~~t~g---~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~-------- 461 (806)
T 1ypw_A 393 DVDLEQVANETHG---HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP-------- 461 (806)
T ss_dssp TCCTHHHHHSCSS---CCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCC--------
T ss_pred cchhHHHHHhhcC---cchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCc--------
Confidence 4455566666666 8888888887777665554322110 0 001223444444444431100
Q ss_pred hHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhcCCCCCCCCCCcccccCCCCCCCCchHHhhhcCCCccCC
Q 007208 440 LKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSAAAPNKDGDSSVPAAAKAPEVPPDNEFEKRIRPEVIPSN 519 (613)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ii~~~ 519 (613)
.. .+ . ....
T Consensus 462 --------------------------------------------------------s~-------------~~-~-~~~~ 470 (806)
T 1ypw_A 462 --------------------------------------------------------SA-------------LR-E-TVVE 470 (806)
T ss_dssp --------------------------------------------------------CC-------------CC-C-CCCC
T ss_pred --------------------------------------------------------hh-------------hh-h-hccc
Confidence 00 00 0 1122
Q ss_pred CCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc----CCC
Q 007208 520 EISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP----CLP 595 (613)
Q Consensus 520 ~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v----~~~ 595 (613)
.+.++|++|+|++++++.|.+.+.+|+.+++.|...++.+++++|||||||||||++|+++|.+++.+|+... ...
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 3578999999999999999999999999999999999999999999999999999999999999999998322 335
Q ss_pred cchHHHHHHHHHHHHhh
Q 007208 596 SLPNGLVRMRRMFELYS 612 (613)
Q Consensus 596 ~lge~e~~Ir~IF~~A~ 612 (613)
++|+.+++++.+|+.|+
T Consensus 551 ~~g~~~~~i~~~f~~a~ 567 (806)
T 1ypw_A 551 WFGESEANVREIFDKAR 567 (806)
T ss_dssp CTTTSSHHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHH
Confidence 78888999999999875
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.7e-27 Score=251.22 Aligned_cols=232 Identities=13% Similarity=0.235 Sum_probs=187.6
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
-+|||+++.++ |+.|..|.+++..+|+||++ |.+---+.+++|||+||+++++++||||+|++++++|+.++.+++
T Consensus 143 p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~--f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 143 PDSTYDMVGGL--TKQIKEIKEVIELPVKHPEL--FESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp CSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHH--HHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 47999999999 99999999999999999997 333224556889999999999999999999999999999999887
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
..+
T Consensus 219 ~sk----------------------------------------------------------------------------- 221 (405)
T 4b4t_J 219 VQK----------------------------------------------------------------------------- 221 (405)
T ss_dssp SCS-----------------------------------------------------------------------------
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 522
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHHHH
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLFQK 289 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l~~ 289 (613)
|.++....++.+|+. +.+.+|+||||||+|.+...+ .+.+..|..
T Consensus 222 ---------------------~vGese~~vr~lF~~---Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 277 (405)
T 4b4t_J 222 ---------------------YIGEGSRMVRELFVM---AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN 277 (405)
T ss_dssp ---------------------STTHHHHHHHHHHHH---HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH
T ss_pred ---------------------ccchHHHHHHHHHHH---HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence 333333456777765 445599999999999987653 235555666
Q ss_pred HHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 007208 290 MMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVL 365 (613)
Q Consensus 290 ~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL 365 (613)
.|+.+. .+|+|||+ +|+++.+|.++.| +|+.+|+|++|+.++|.+||+.++.. +-
T Consensus 278 ~lDg~~~~~~V~vIaA-----TNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~----------------~~ 336 (405)
T 4b4t_J 278 QLDGFETSKNIKIIMA-----TNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK----------------MN 336 (405)
T ss_dssp HHHTTTCCCCEEEEEE-----ESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT----------------SB
T ss_pred hhhccCCCCCeEEEec-----cCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC----------------CC
Confidence 667655 47888886 7788999999998 99999999999999999999987532 11
Q ss_pred hcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 366 SANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 366 ~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++...|+..|.+ |++++|+.+|..|..+++.++ +..|+.+||..|+..+
T Consensus 337 l~~dvdl~~lA~~t~G---~SGADi~~l~~eA~~~Air~~--------~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 337 LTRGINLRKVAEKMNG---CSGADVKGVCTEAGMYALRER--------RIHVTQEDFELAVGKV 389 (405)
T ss_dssp CCSSCCHHHHHHHCCS---CCHHHHHHHHHHHHHHHHHTT--------CSBCCHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHcC--------CCCcCHHHHHHHHHHH
Confidence 2356777888888888 999999999999988887643 3458999999999744
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-26 Score=248.55 Aligned_cols=234 Identities=15% Similarity=0.214 Sum_probs=189.3
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+.-+|||+++.++ |+.|+.|.+++..+|+||++ |.+---+.+++|||+||+++++++||||+|++++++|+.++.+
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~--f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPEL--YEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHH--HHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 5678999999999 99999999999999999997 3333345678999999999999999999999999999999998
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
+|..+
T Consensus 251 ~l~sk--------------------------------------------------------------------------- 255 (437)
T 4b4t_I 251 ELIQK--------------------------------------------------------------------------- 255 (437)
T ss_dssp GGCCS---------------------------------------------------------------------------
T ss_pred Hhhhc---------------------------------------------------------------------------
Confidence 88522
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLF 287 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l 287 (613)
|..+....++.+|+.+. +.+|+||||||+|.++..+ .+.+..|
T Consensus 256 -----------------------~vGesek~ir~lF~~Ar---~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~L 309 (437)
T 4b4t_I 256 -----------------------YLGDGPRLCRQIFKVAG---ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLEL 309 (437)
T ss_dssp -----------------------SSSHHHHHHHHHHHHHH---HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHH
T ss_pred -----------------------cCchHHHHHHHHHHHHH---hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHH
Confidence 33333446677777644 4599999999999987653 2344455
Q ss_pred HHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007208 288 QKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIME 363 (613)
Q Consensus 288 ~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~ 363 (613)
...++.+. ++|+|||+ +|+++.+|.++.| +|+.+|+|++|+.++|.+||+.++..
T Consensus 310 L~~lDg~~~~~~ViVIaA-----TNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~---------------- 368 (437)
T 4b4t_I 310 LNQLDGFDDRGDVKVIMA-----TNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK---------------- 368 (437)
T ss_dssp HHHHHHCCCSSSEEEEEE-----ESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT----------------
T ss_pred HHHhhCcCCCCCEEEEEe-----CCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC----------------
Confidence 55566554 56888886 7788999999998 99999999999999999999988632
Q ss_pred HhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 364 VLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 364 vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
+-...+++...|+..|.+ |++++|+.+|..|..+++.+. +..|+.+||..|++..
T Consensus 369 ~~l~~dvdl~~LA~~T~G---fSGADI~~l~~eA~~~Air~~--------~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 369 MNLSEDVNLETLVTTKDD---LSGADIQAMCTEAGLLALRER--------RMQVTAEDFKQAKERV 423 (437)
T ss_dssp SCBCSCCCHHHHHHHCCS---CCHHHHHHHHHHHHHHHHHTT--------CSCBCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcC--------CCccCHHHHHHHHHHH
Confidence 112356777888888888 999999999999998887643 3458999999999744
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.7e-26 Score=248.55 Aligned_cols=235 Identities=17% Similarity=0.235 Sum_probs=189.2
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+.-+|||+++.++ |..|+.|.+++..+|+||++ |.+---+.+++|||+||+++++++||||+|++++++|+.++..
T Consensus 174 ~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~--f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 174 EKPTETYSDVGGL--DKQIEELVEAIVLPMKRADK--FKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHH--HHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 4568999999999 99999999999999999997 4443345678999999999999999999999999999999998
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
+|..+
T Consensus 250 ~l~~~--------------------------------------------------------------------------- 254 (434)
T 4b4t_M 250 QLVQM--------------------------------------------------------------------------- 254 (434)
T ss_dssp GGCSS---------------------------------------------------------------------------
T ss_pred hhhhc---------------------------------------------------------------------------
Confidence 88522
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLF 287 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l 287 (613)
|.++....++.+|+.+.. .+|+||||||+|.++..+ .+.+..|
T Consensus 255 -----------------------~vGese~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~l 308 (434)
T 4b4t_M 255 -----------------------YIGEGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLEL 308 (434)
T ss_dssp -----------------------CSSHHHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHH
T ss_pred -----------------------ccchHHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHH
Confidence 222333466777776544 599999999999987653 1234445
Q ss_pred HHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007208 288 QKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIME 363 (613)
Q Consensus 288 ~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~ 363 (613)
...++.+. ++|+|||+ +|.++.+|.++.+ +|+.+|+|++|+.++|.+||+.++..
T Consensus 309 L~~ldg~~~~~~ViVIaa-----TNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~---------------- 367 (434)
T 4b4t_M 309 LNQLDGFSSDDRVKVLAA-----TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK---------------- 367 (434)
T ss_dssp HHHHTTSCSSCSSEEEEE-----CSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH----------------
T ss_pred HHHhhccCCCCCEEEEEe-----CCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC----------------
Confidence 55555554 46888886 7888999999988 99999999999999999999988632
Q ss_pred HhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhh
Q 007208 364 VLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 364 vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q 430 (613)
+-...+++...|+..|.+ |++++|..+|..|..+++.+.. -.|+.+||..|+..++
T Consensus 368 ~~~~~dvdl~~lA~~t~G---~sGADi~~l~~eA~~~a~r~~~--------~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 368 MTTDDDINWQELARSTDE---FNGAQLKAVTVEAGMIALRNGQ--------SSVKHEDFVEGISEVQ 423 (434)
T ss_dssp SCBCSCCCHHHHHHHCSS---CCHHHHHHHHHHHHHHHHHHTC--------SSBCHHHHHHHHHSCS
T ss_pred CCCCCcCCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcCC--------CCcCHHHHHHHHHHHh
Confidence 112356777888888888 9999999999999888876543 2489999999998554
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-25 Score=243.40 Aligned_cols=234 Identities=18% Similarity=0.248 Sum_probs=186.4
Q ss_pred CcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 60 ESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 60 ~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
.-+|||+++.++ |+.|..|.+++..+|+||+++ .+-=.+.+++|||+||+++++++||||+|+++|++|+.++..+
T Consensus 175 ~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~f--~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 175 QGEITFDGIGGL--TEQIRELREVIELPLKNPEIF--QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp SCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHHH--HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHHH--HhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 558999999999 999999999999999999973 3322456789999999999999999999999999999999988
Q ss_pred chhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccc
Q 007208 140 FSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASAS 219 (613)
Q Consensus 140 ~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (613)
+..+
T Consensus 251 l~sk---------------------------------------------------------------------------- 254 (437)
T 4b4t_L 251 IVDK---------------------------------------------------------------------------- 254 (437)
T ss_dssp TCCS----------------------------------------------------------------------------
T ss_pred hccc----------------------------------------------------------------------------
Confidence 7522
Q ss_pred cccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHHH
Q 007208 220 ANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLFQ 288 (613)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l~ 288 (613)
|.......++.+|.. +.+++|+||||||+|.++..+ .+.+..|.
T Consensus 255 ----------------------~~Gese~~ir~~F~~---A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 309 (437)
T 4b4t_L 255 ----------------------YIGESARIIREMFAY---AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELL 309 (437)
T ss_dssp ----------------------SSSHHHHHHHHHHHH---HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHH
T ss_pred ----------------------cchHHHHHHHHHHHH---HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHH
Confidence 222223355666664 555699999999999987653 23445566
Q ss_pred HHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007208 289 KMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEV 364 (613)
Q Consensus 289 ~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~v 364 (613)
..++.+. ++|+|||+ +|.++.+|.++.| +|+.+|+|++|+.++|.+||+.++.. +
T Consensus 310 ~~lDg~~~~~~vivI~A-----TNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~----------------~ 368 (437)
T 4b4t_L 310 TQMDGFDNLGQTKIIMA-----TNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK----------------V 368 (437)
T ss_dssp HHHHSSSCTTSSEEEEE-----ESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT----------------S
T ss_pred HHhhcccCCCCeEEEEe-----cCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC----------------C
Confidence 6666655 46888885 6788999999987 59999999999999999999988632 1
Q ss_pred hhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhh
Q 007208 365 LSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 365 L~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q 430 (613)
-...+++...|+..|.+ |++++|..+|..|..+++.++. -.|+.+||..|+..+.
T Consensus 369 ~~~~d~dl~~lA~~t~G---~sGADi~~l~~eA~~~air~~~--------~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 369 KKTGEFDFEAAVKMSDG---FNGADIRNCATEAGFFAIRDDR--------DHINPDDLMKAVRKVA 423 (437)
T ss_dssp CBCSCCCHHHHHHTCCS---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHHH
Confidence 12346777788888888 9999999999999888887543 2489999999998554
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-25 Score=241.73 Aligned_cols=233 Identities=11% Similarity=0.172 Sum_probs=185.2
Q ss_pred CcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 60 ESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 60 ~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
.-+|||+++.++ |+.|..|.+++..+|++|+++ .+-=-...++|||+||+++++++||||+|++++++|+.++..+
T Consensus 203 ~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~f--~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 203 KPDVTYSDVGGC--KDQIEKLREVVELPLLSPERF--ATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp SCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHHH--HHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHHH--HHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 446999999999 999999999999999999873 3222356788999999999999999999999999999999988
Q ss_pred chhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccc
Q 007208 140 FSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASAS 219 (613)
Q Consensus 140 ~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (613)
|..+
T Consensus 279 L~sk---------------------------------------------------------------------------- 282 (467)
T 4b4t_H 279 LVQK---------------------------------------------------------------------------- 282 (467)
T ss_dssp GCCC----------------------------------------------------------------------------
T ss_pred hhcc----------------------------------------------------------------------------
Confidence 7522
Q ss_pred cccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHHH
Q 007208 220 ANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLFQ 288 (613)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l~ 288 (613)
|.+.....++.+|+. +.+.+|+||||||+|.+...+ .+.+..|.
T Consensus 283 ----------------------~vGesek~ir~lF~~---Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 337 (467)
T 4b4t_H 283 ----------------------YVGEGARMVRELFEM---ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELI 337 (467)
T ss_dssp ----------------------SSSHHHHHHHHHHHH---HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHH
T ss_pred ----------------------cCCHHHHHHHHHHHH---HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHH
Confidence 222233456666665 445699999999999987653 12333444
Q ss_pred HHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007208 289 KMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEV 364 (613)
Q Consensus 289 ~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~v 364 (613)
..|+.+. ++|+|||+ +|+++.+|.++.| ||+.+|+|++|+.++|.+||+.++.. +
T Consensus 338 ~~lDg~~~~~~ViVIaA-----TNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~----------------~ 396 (467)
T 4b4t_H 338 TQLDGFDPRGNIKVMFA-----TNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS----------------M 396 (467)
T ss_dssp HHHHSSCCTTTEEEEEE-----CSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT----------------S
T ss_pred HHhhccCCCCcEEEEeC-----CCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC----------------C
Confidence 4455443 56888886 7888999999998 99999999999999999999987632 1
Q ss_pred hhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 365 LSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 365 L~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
-...+++...|+..|.+ |++++|..+|..|..+++.... -.|+.+||..|++.+
T Consensus 397 ~l~~dvdl~~LA~~T~G---fSGADI~~l~~eAa~~Air~~~--------~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 397 SVERGIRWELISRLCPN---STGAELRSVCTEAGMFAIRARR--------KVATEKDFLKAVDKV 450 (467)
T ss_dssp CBCSSCCHHHHHHHCCS---CCHHHHHHHHHHHHHHHHHHTC--------SSBCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHcCC--------CccCHHHHHHHHHHH
Confidence 12356778888888888 9999999999999888886543 348999999999744
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-24 Score=235.85 Aligned_cols=232 Identities=18% Similarity=0.261 Sum_probs=186.6
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+.-+|||+++.++ |..|+.|.+++..+|++|++++ +-=-+.+++|||+||+++++++||||+|++++++|+.++..
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~~~--~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADLYE--QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHH--HHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 3457999999999 9999999999999999998733 22235678899999999999999999999999999999988
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
++..+
T Consensus 241 ~l~~~--------------------------------------------------------------------------- 245 (428)
T 4b4t_K 241 EFVHK--------------------------------------------------------------------------- 245 (428)
T ss_dssp GTCCS---------------------------------------------------------------------------
T ss_pred hhhcc---------------------------------------------------------------------------
Confidence 87522
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLF 287 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l 287 (613)
|.+.....++.+|+. +.+.+|+||||||+|.+...+ ++.+..|
T Consensus 246 -----------------------~~Ge~e~~ir~lF~~---A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~l 299 (428)
T 4b4t_K 246 -----------------------YLGEGPRMVRDVFRL---ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIEL 299 (428)
T ss_dssp -----------------------SCSHHHHHHHHHHHH---HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHH
T ss_pred -----------------------ccchhHHHHHHHHHH---HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHH
Confidence 222223355666665 445699999999999987653 3567777
Q ss_pred HHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeC-CCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007208 288 QKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIR-PPEDENHLVSWKSQLEEDMKMMQAKDNRNHIM 362 (613)
Q Consensus 288 ~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~-~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~ 362 (613)
...++.+. .+|+|||+ +|+++.+|.++.| +|+.+|+|+ +|+.++|..||+.++.. +
T Consensus 300 L~~ldg~~~~~~v~vI~a-----TN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~------------- 360 (428)
T 4b4t_K 300 LTQMDGFDQSTNVKVIMA-----TNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-M------------- 360 (428)
T ss_dssp HHHHHHSCSSCSEEEEEE-----ESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-S-------------
T ss_pred HHHhhCCCCCCCEEEEEe-----cCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-C-------------
Confidence 77888765 46888886 6788999999998 999999996 99999999999988632 1
Q ss_pred HHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhh
Q 007208 363 EVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLS 427 (613)
Q Consensus 363 ~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~ 427 (613)
-...+++...|+..|.+ |++++|..+|..|..+++.++. -.|+.+||..|+.
T Consensus 361 --~l~~~~dl~~lA~~t~G---~sgadi~~l~~eA~~~a~r~~~--------~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 361 --SLAPEADLDSLIIRNDS---LSGAVIAAIMQEAGLRAVRKNR--------YVILQSDLEEAYA 412 (428)
T ss_dssp --CBCTTCCHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHHH
T ss_pred --CCCcccCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCC--------CCCCHHHHHHHHH
Confidence 12346677788888887 9999999999999888876543 3589999999996
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.88 E-value=2.4e-23 Score=241.06 Aligned_cols=261 Identities=17% Similarity=0.265 Sum_probs=171.6
Q ss_pred CCChHHHHHHHHHcc------cCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchh
Q 007208 41 AVTPEKMEKELLRQI------VDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAE 114 (613)
Q Consensus 41 ~~~~~~~e~~l~~~v------v~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e 114 (613)
.++.+.|+..+..-. +..+.-+|+|++.+.+ ++.|..|.+++..++++|+. |.+--...+++|||+||++
T Consensus 446 ~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl--~~~k~~l~e~v~~p~~~p~~--f~~~g~~~~~gvLl~GPPG 521 (806)
T 3cf2_A 446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGL--EDVKRELQELVQYPVEHPDK--FLKFGMTPSKGVLFYGPPG 521 (806)
T ss_dssp EECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSC--HHHHHHHTTTTTTTTTCSGG--GSSSCCCCCSCCEEESSTT
T ss_pred eeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCH--HHHHHHHHHHHHhhhhCHHH--HHhcCCCCCceEEEecCCC
Confidence 456667776654321 1233457899999999 99999999999999999986 4443345678899999999
Q ss_pred HHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCC
Q 007208 115 LYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGS 194 (613)
Q Consensus 115 ~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 194 (613)
+++++||||+|++++++|+.++..++..+| .|.+
T Consensus 522 tGKT~lAkaiA~e~~~~f~~v~~~~l~s~~---vGes------------------------------------------- 555 (806)
T 3cf2_A 522 CGKTLLAKAIANECQANFISIKGPELLTMW---FGES------------------------------------------- 555 (806)
T ss_dssp SSHHHHHHHHHHTTTCEEEECCHHHHHTTT---CSSC-------------------------------------------
T ss_pred CCchHHHHHHHHHhCCceEEeccchhhccc---cchH-------------------------------------------
Confidence 999999999999999999999998886443 2221
Q ss_pred CcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccch
Q 007208 195 GVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVD 274 (613)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD 274 (613)
...++.||+. +.+.+|+||||||+|
T Consensus 556 ----------------------------------------------------e~~vr~lF~~---Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 556 ----------------------------------------------------EANVREIFDK---ARQAAPCVLFFDELD 580 (806)
T ss_dssp ----------------------------------------------------HHHHHHHHHH---HHTTCSEEEECSCGG
T ss_pred ----------------------------------------------------HHHHHHHHHH---HHHcCCceeechhhh
Confidence 2245556654 555699999999999
Q ss_pred hhhhhh-----------hHHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHH
Q 007208 275 KLIFKS-----------QRTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLV 339 (613)
Q Consensus 275 ~~l~~s-----------~r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~ 339 (613)
.|+..+ .|.++.|...|+.+. .+|+|||+ +|.++.+|+++.| +|+..|.|++|+.++|.+
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~a-----TN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~ 655 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGA-----TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp GCC--------------CHHHHHHHHHHHSSCSSSSEEEECC------CCSSSSCHHHHSTTTSCCEEEC-----CHHHH
T ss_pred HHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEe-----CCCchhCCHhHcCCCcceEEEEECCcCHHHHHH
Confidence 988653 357888888888876 46999995 7888999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCccc---------
Q 007208 340 SWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDY--------- 410 (613)
Q Consensus 340 Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~--------- 410 (613)
||+.++.. .-...+++...|+..|.+ |++++|+.+|..|...++.+......
T Consensus 656 il~~~l~~----------------~~~~~~~dl~~la~~t~g---~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~ 716 (806)
T 3cf2_A 656 ILKANLRK----------------SPVAKDVDLEFLAKMTNG---FSGADLTEICQRACKLAIRESIESEIRRERERQTN 716 (806)
T ss_dssp TTTTTSSC----------------C--CCC-------------------CHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHhcC----------------CCCCCCCCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Confidence 99987621 112346677777777777 99999999999997777643211100
Q ss_pred --------CCCceeechhhHHhhhhhhh
Q 007208 411 --------RNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 411 --------~~~~l~is~~sl~~al~~~q 430 (613)
.+....|+++||..||...+
T Consensus 717 ~~~~~~~~~~~~~~i~~~df~~al~~~~ 744 (806)
T 3cf2_A 717 PSAMEVEEDDPVPEIRRDHFEEAMRFAR 744 (806)
T ss_dssp -----------CCC----CCTTTC----
T ss_pred ccccccccccccCccCHHHHHHHHHhCC
Confidence 01123589999999997543
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3e-22 Score=215.58 Aligned_cols=95 Identities=22% Similarity=0.448 Sum_probs=88.8
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee----ccC
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM----SPC 593 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~----~v~ 593 (613)
.+.|+|+|+||||++++|++|++.|.+|++||++|...|+.+|+|+|||||||||||++|+|+|++++++|+. .+.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 4557999999999999999999999999999999999999999999999999999999999999999999993 345
Q ss_pred CCcchHHHHHHHHHHHHhh
Q 007208 594 LPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 594 ~~~lge~e~~Ir~IF~~A~ 612 (613)
+.|+|+++++||++|+.|.
T Consensus 220 sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHH
Confidence 5799999999999999985
No 11
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.3e-21 Score=208.53 Aligned_cols=94 Identities=28% Similarity=0.514 Sum_probs=88.2
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee----ccCC
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM----SPCL 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~----~v~~ 594 (613)
+.|+|+|+||||++++|++|++.|.+|++||++|...|+.+++|||||||||||||++|+|||++++++|+. .+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 557899999999999999999999999999999999999999999999999999999999999999999993 3455
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.|+|+++++||++|+.|.
T Consensus 255 k~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp SSSSHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHH
Confidence 789999999999999885
No 12
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.9e-21 Score=209.63 Aligned_cols=94 Identities=32% Similarity=0.552 Sum_probs=88.4
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee----ccCC
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM----SPCL 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~----~v~~ 594 (613)
+.|+|+|+||||++++|+.|++.|.+|+++|++|..+|+.+|+|||||||||||||++|+|||++++++|+. .+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 567899999999999999999999999999999999999999999999999999999999999999999993 3455
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.++|+++++||++|+.|.
T Consensus 282 k~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMAR 299 (467)
T ss_dssp CSSSHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 789999999999999985
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.8e-21 Score=208.44 Aligned_cols=95 Identities=28% Similarity=0.491 Sum_probs=88.7
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee----ccC
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM----SPC 593 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~----~v~ 593 (613)
.+.|+++|+||||++++|+.|++.|.+|++||++|...|+++|+|||||||||||||++|+|+|++++++|+. .+.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999993 345
Q ss_pred CCcchHHHHHHHHHHHHhh
Q 007208 594 LPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 594 ~~~lge~e~~Ir~IF~~A~ 612 (613)
+.|+|+++++||.+|+.|.
T Consensus 253 ~~~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAK 271 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHH
Confidence 5789999999999999885
No 14
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.8e-21 Score=207.95 Aligned_cols=94 Identities=30% Similarity=0.569 Sum_probs=88.3
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee----ccCC
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM----SPCL 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~----~v~~ 594 (613)
+.|+|+|+||||++++++.|++.|.+|++||++|...|+.||+|||||||||||||++|+|||++++++|+. .+.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 567999999999999999999999999999999999999999999999999999999999999999999993 3455
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.|+|+++++||.+|..|.
T Consensus 254 k~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAK 271 (437)
T ss_dssp SSSSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 789999999999999885
No 15
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=8.4e-21 Score=206.25 Aligned_cols=94 Identities=33% Similarity=0.532 Sum_probs=88.2
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee----ccCC
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM----SPCL 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~----~v~~ 594 (613)
+.|+++|+||||++++|+.|++.+.+|+++|++|...|+.+++|+|||||||||||++|+|||++++++|+. .+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 567899999999999999999999999999999999999999999999999999999999999999999993 3455
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.++|+++++||++|+.|.
T Consensus 245 ~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp SSCSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHH
Confidence 789999999999999885
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.8e-19 Score=186.07 Aligned_cols=215 Identities=19% Similarity=0.274 Sum_probs=154.9
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhh-CCeEEEeec
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFF-EAKLLLLDV 137 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f-~a~LL~lD~ 137 (613)
+.-+|+|+++..+ +..|..|.+++..+++++++++ . .....+.|||+||+++++++||||+|+++ ++.++.++.
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~--~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT--G-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGGSC--T-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHHHh--C-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 3457999999999 9999999999999999998744 2 23456889999999999999999999999 999998888
Q ss_pred ccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCc
Q 007208 138 TDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNAS 217 (613)
Q Consensus 138 ~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (613)
.++..++
T Consensus 80 ~~l~~~~------------------------------------------------------------------------- 86 (322)
T 1xwi_A 80 SDLVSKW------------------------------------------------------------------------- 86 (322)
T ss_dssp CSSCCSS-------------------------------------------------------------------------
T ss_pred HHHHhhh-------------------------------------------------------------------------
Confidence 7664111
Q ss_pred cccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHH
Q 007208 218 ASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQK 289 (613)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~ 289 (613)
.......++.+|+. +...+|+||||||+|.+...+ .++...|..
T Consensus 87 -------------------------~g~~~~~~~~lf~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 138 (322)
T 1xwi_A 87 -------------------------LGESEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLV 138 (322)
T ss_dssp -------------------------CCSCHHHHHHHHHH---HHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHH
T ss_pred -------------------------hhHHHHHHHHHHHH---HHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHH
Confidence 00011234555554 444699999999999975542 245555666
Q ss_pred HHHhh---cCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 007208 290 MMKKL---LASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLS 366 (613)
Q Consensus 290 ~l~~l---~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~ 366 (613)
.++.+ ..+|+|||+ ++.++.+++++.++|+..|.|++|+.++|.+||+.++..... ...+.+
T Consensus 139 ~ld~~~~~~~~v~vI~a-----tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~~~~--------- 203 (322)
T 1xwi_A 139 QMQGVGVDNDGILVLGA-----TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SLTEAD--------- 203 (322)
T ss_dssp HHHCSSSCCTTEEEEEE-----ESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CCCHHH---------
T ss_pred HHhcccccCCCEEEEEe-----cCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CCCHHH---------
Confidence 66654 356888886 456678999999999999999999999999999987632100 001111
Q ss_pred cCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhh
Q 007208 367 ANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHL 402 (613)
Q Consensus 367 ~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l 402 (613)
...|+..+.+ +++++|+.++..|...++
T Consensus 204 -----l~~la~~t~G---~sgadl~~l~~~A~~~a~ 231 (322)
T 1xwi_A 204 -----FRELGRKTDG---YSGADISIIVRDALMQPV 231 (322)
T ss_dssp -----HHHHHHTCTT---CCHHHHHHHHHHHHTHHH
T ss_pred -----HHHHHHHcCC---CCHHHHHHHHHHHHHHHH
Confidence 2233334444 777777777777754443
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.80 E-value=1.6e-18 Score=183.63 Aligned_cols=229 Identities=18% Similarity=0.259 Sum_probs=156.1
Q ss_pred HHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHH
Q 007208 45 EKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKAL 124 (613)
Q Consensus 45 ~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKAL 124 (613)
+++...+.. .+..+.-.++|+++.++ +..+..|.+++..+++++++++. .....+.|||+||+++++++||||+
T Consensus 31 ~~~~~~~~~-~~~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 31 KKLRGALSS-AILSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp -----------------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTTSCHHHHHHHH
T ss_pred HHHHHHHhh-hhcccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCCCcHHHHHHHH
Confidence 344444443 34456678999999999 99999999999999999987442 2345678999999999999999999
Q ss_pred HhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCcc
Q 007208 125 AHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTE 204 (613)
Q Consensus 125 A~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (613)
|++++++++.++..++..++
T Consensus 105 a~~~~~~~~~v~~~~l~~~~------------------------------------------------------------ 124 (355)
T 2qp9_X 105 ATEANSTFFSVSSSDLVSKW------------------------------------------------------------ 124 (355)
T ss_dssp HHHHTCEEEEEEHHHHHSCC------------------------------------------------------------
T ss_pred HHHhCCCEEEeeHHHHhhhh------------------------------------------------------------
Confidence 99999999999887764111
Q ss_pred CCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh----
Q 007208 205 GSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS---- 280 (613)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s---- 280 (613)
.......++.+|+. +...+|+||||||+|.+...+
T Consensus 125 --------------------------------------~g~~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~r~~~~ 163 (355)
T 2qp9_X 125 --------------------------------------MGESEKLVKQLFAM---ARENKPSIIFIDQVDALTGTRGEGE 163 (355)
T ss_dssp -----------------------------------------CHHHHHHHHHH---HHHTSSEEEEEECGGGGTC------
T ss_pred --------------------------------------cchHHHHHHHHHHH---HHHcCCeEEEEechHhhcccCCCCc
Confidence 00011234555554 344699999999999976432
Q ss_pred ----hHHHHHHHHHHHhh---cCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhh
Q 007208 281 ----QRTYNLFQKMMKKL---LASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQ 353 (613)
Q Consensus 281 ----~r~~~~l~~~l~~l---~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~ 353 (613)
.++...|...++.+ ..+|+|||+ ++.+..++.++.++|...|.|++|+.++|.+||+.++....
T Consensus 164 ~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a-----tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~---- 234 (355)
T 2qp9_X 164 SEASRRIKTELLVQMNGVGNDSQGVLVLGA-----TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP---- 234 (355)
T ss_dssp CTHHHHHHHHHHHHHHHCC---CCEEEEEE-----ESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC----
T ss_pred chHHHHHHHHHHHHhhcccccCCCeEEEee-----cCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC----
Confidence 34555666666655 356888886 45667899999999999999999999999999998763210
Q ss_pred hhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhh
Q 007208 354 AKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLM 403 (613)
Q Consensus 354 ~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~ 403 (613)
..+ .+.+...|+..+.+ +++++|..+|..|...++.
T Consensus 235 --~~~---------~~~~l~~la~~t~G---~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 235 --SVL---------TKEDYRTLGAMTEG---YSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp --BCC---------CHHHHHHHHHHTTT---CCHHHHHHHHHHHHHHHHH
T ss_pred --CCC---------CHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHH
Confidence 000 01122334445554 8888888888888766654
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.79 E-value=1.7e-18 Score=191.27 Aligned_cols=239 Identities=17% Similarity=0.281 Sum_probs=176.5
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 62 NITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 62 ~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
.++|+++.+. +..+..|.+.+...++++++++... ....+.|||+||+++++++||||+|++++++++.++..++.
T Consensus 200 ~~~~~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g--~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCCGGGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHT--CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCCHHHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 4689999998 9999999999999999988643321 34566799999999999999999999999999999987765
Q ss_pred hhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccccc
Q 007208 142 LKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASAN 221 (613)
Q Consensus 142 ~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (613)
.++ +|
T Consensus 276 ~~~----------------------------~g----------------------------------------------- 280 (489)
T 3hu3_A 276 SKL----------------------------AG----------------------------------------------- 280 (489)
T ss_dssp TSC----------------------------TT-----------------------------------------------
T ss_pred hhh----------------------------cc-----------------------------------------------
Confidence 111 00
Q ss_pred cccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHHHHh
Q 007208 222 ISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKMMKK 293 (613)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~l~~ 293 (613)
.....+.. +|..+.+.+|+||||||+|.+...+ .++...|...|+.
T Consensus 281 -----------------------~~~~~~~~---~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 281 -----------------------ESESNLRK---AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp -----------------------HHHHHHHH---HHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------hhHHHHHH---HHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc
Confidence 01112233 3445556799999999999977643 2566677777776
Q ss_pred hc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC
Q 007208 294 LL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSAND 369 (613)
Q Consensus 294 l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~d 369 (613)
+. ..|+||++ ++.+..+++++.+ +|...|.|++|+.++|.+||+.++.. +....+
T Consensus 335 ~~~~~~v~vIaa-----Tn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~----------------~~l~~~ 393 (489)
T 3hu3_A 335 LKQRAHVIVMAA-----TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN----------------MKLADD 393 (489)
T ss_dssp SCTTSCEEEEEE-----ESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT----------------SCBCTT
T ss_pred cccCCceEEEEe-----cCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc----------------CCCcch
Confidence 54 46788886 4556778899988 99999999999999999999877532 112234
Q ss_pred CCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcc-cC--------CCceeechhhHHhhhhhh
Q 007208 370 LDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTD-YR--------NGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 370 l~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~-~~--------~~~l~is~~sl~~al~~~ 429 (613)
++...|+..+.+ +++++++.++..|...++.+..+.. .. ...+.|++++|..|+..+
T Consensus 394 ~~l~~la~~t~g---~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 394 VDLEQVANETHG---HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp CCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSH
T ss_pred hhHHHHHHHccC---CcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhC
Confidence 556667777766 9999999999999888876543211 00 123568999999999743
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.79 E-value=2.3e-18 Score=179.41 Aligned_cols=216 Identities=19% Similarity=0.279 Sum_probs=158.1
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
+.-+++|+++..+ +..+..|.+.+..+++++++++. .....+.|||+||+++++++||||+|++.+++++.++..
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCCT---TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4457899999999 99999999999999999987543 234567899999999999999999999999999999887
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
++..++
T Consensus 86 ~l~~~~-------------------------------------------------------------------------- 91 (322)
T 3eie_A 86 DLVSKW-------------------------------------------------------------------------- 91 (322)
T ss_dssp HHHTTT--------------------------------------------------------------------------
T ss_pred HHhhcc--------------------------------------------------------------------------
Confidence 764111
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKM 290 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~ 290 (613)
.......++.+|+. +.+.+|.||||||+|.+...+ .++...|...
T Consensus 92 ------------------------~g~~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 144 (322)
T 3eie_A 92 ------------------------MGESEKLVKQLFAM---ARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQ 144 (322)
T ss_dssp ------------------------GGGHHHHHHHHHHH---HHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHH
T ss_pred ------------------------cchHHHHHHHHHHH---HHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHH
Confidence 11112344555554 445599999999999976543 3455556666
Q ss_pred HHhh---cCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhc
Q 007208 291 MKKL---LASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSA 367 (613)
Q Consensus 291 l~~l---~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~ 367 (613)
++.+ ..+|+|||+ ++.+..+++++.++|...|.|++|+.++|.+||+.++..... .....
T Consensus 145 l~~~~~~~~~v~vi~a-----tn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----------- 207 (322)
T 3eie_A 145 MNGVGNDSQGVLVLGA-----TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VLTKE----------- 207 (322)
T ss_dssp HGGGGTSCCCEEEEEE-----ESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCCHH-----------
T ss_pred hccccccCCceEEEEe-----cCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCCHH-----------
Confidence 6654 356888886 456778999999999999999999999999999987632100 00011
Q ss_pred CCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhh
Q 007208 368 NDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLM 403 (613)
Q Consensus 368 ~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~ 403 (613)
+...|+..+.+ +++++|..++..|...++.
T Consensus 208 ---~l~~la~~t~g---~sg~di~~l~~~a~~~a~r 237 (322)
T 3eie_A 208 ---DYRTLGAMTEG---YSGSDIAVVVKDALMQPIR 237 (322)
T ss_dssp ---HHHHHHHTTTT---CCHHHHHHHHHHHTTHHHH
T ss_pred ---HHHHHHHHcCC---CCHHHHHHHHHHHHHHHHH
Confidence 12234444444 8888888888888665543
No 20
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.78 E-value=2.2e-18 Score=178.05 Aligned_cols=242 Identities=17% Similarity=0.282 Sum_probs=175.2
Q ss_pred CcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 60 ESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 60 ~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
.-.++|+++.++ +.++..|.+.+..++++++. |.+--....+.|||+||+++++++||||||+++++.++.++..+
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~--~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~ 84 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDK--FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 84 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHH--HHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHH
Confidence 446899999999 99999999999999999876 22211345678999999999999999999999999999999887
Q ss_pred chhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccc
Q 007208 140 FSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASAS 219 (613)
Q Consensus 140 ~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (613)
+..++ +|.+.
T Consensus 85 l~~~~---~g~~~------------------------------------------------------------------- 94 (301)
T 3cf0_A 85 LLTMW---FGESE------------------------------------------------------------------- 94 (301)
T ss_dssp HHHHH---HTTCT-------------------------------------------------------------------
T ss_pred HHhhh---cCchH-------------------------------------------------------------------
Confidence 75443 22210
Q ss_pred cccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHHH
Q 007208 220 ANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLFQ 288 (613)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l~ 288 (613)
..+..+|+ .+...+|+||||||+|.+...+ .+....|.
T Consensus 95 ----------------------------~~~~~~f~---~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL 143 (301)
T 3cf0_A 95 ----------------------------ANVREIFD---KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 143 (301)
T ss_dssp ----------------------------THHHHHHH---HHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHH
T ss_pred ----------------------------HHHHHHHH---HHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHH
Confidence 01233444 4445689999999999976542 34556666
Q ss_pred HHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007208 289 KMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEV 364 (613)
Q Consensus 289 ~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~v 364 (613)
..++.+. .+|+|||+ ++.++.+++++.+ +|...|.|++|+.++|.+||+.++... +
T Consensus 144 ~~l~~~~~~~~v~vi~a-----tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~--------~------- 203 (301)
T 3cf0_A 144 TEMDGMSTKKNVFIIGA-----TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--------P------- 203 (301)
T ss_dssp HHHHSSCTTSSEEEEEE-----ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--------C-------
T ss_pred HHhhcccCCCCEEEEEe-----cCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC--------C-------
Confidence 6777553 46888886 4566788899888 999999999999999999998776320 0
Q ss_pred hhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCC------------c---cc--CCCceeechhhHHhhhh
Q 007208 365 LSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNED------------T---DY--RNGKLIISSKSLSHGLS 427 (613)
Q Consensus 365 L~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~------------~---~~--~~~~l~is~~sl~~al~ 427 (613)
...+++...|+..+.+ +++++|..++..|...++..... + +. ......|++++|..||.
T Consensus 204 -~~~~~~~~~la~~~~g---~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~ 279 (301)
T 3cf0_A 204 -VAKDVDLEFLAKMTNG---FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 279 (301)
T ss_dssp -BCSSCCHHHHHHTCSS---CCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHT
T ss_pred -CCccchHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHH
Confidence 1235566667776666 89999999988887666532110 0 00 01124699999999998
Q ss_pred hhh
Q 007208 428 IFQ 430 (613)
Q Consensus 428 ~~q 430 (613)
..+
T Consensus 280 ~~~ 282 (301)
T 3cf0_A 280 FAR 282 (301)
T ss_dssp TCC
T ss_pred HcC
Confidence 554
No 21
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.76 E-value=9e-18 Score=172.03 Aligned_cols=244 Identities=18% Similarity=0.252 Sum_probs=162.3
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
-+|+|+++..+ ++.|..|.+....++++++..+.. ++.. .++|||+||+++++++|+||||.+.++.++.++..++
T Consensus 5 ~~~~~~di~g~--~~~~~~l~~~i~~~~~~~~~l~~~-~l~~-~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l 80 (274)
T 2x8a_A 5 PNVTWADIGAL--EDIREELTMAILAPVRNPDQFKAL-GLVT-PAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPEL 80 (274)
T ss_dssp -------CCHH--HHHHHHHHHHHTHHHHSHHHHHHT-TCCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHc-CCCC-CCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHH
Confidence 36899999999 999999999999999998764332 2333 3449999999999999999999999999888887665
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
..+
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (274)
T 2x8a_A 81 LNM----------------------------------------------------------------------------- 83 (274)
T ss_dssp CSS-----------------------------------------------------------------------------
T ss_pred Hhh-----------------------------------------------------------------------------
Confidence 311
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHHHH
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKMMK 292 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~l~ 292 (613)
|.......+..+|+ .+....|+|+|+|++|.+...+ .+....+-..|+
T Consensus 84 ---------------------~~~~~~~~i~~vf~---~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Ls 139 (274)
T 2x8a_A 84 ---------------------YVGESERAVRQVFQ---RAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMD 139 (274)
T ss_dssp ---------------------TTHHHHHHHHHHHH---HHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHH
T ss_pred ---------------------hhhHHHHHHHHHHH---HHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhh
Confidence 11111123344444 4445699999999999965432 123333333333
Q ss_pred hhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 007208 293 KLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSAN 368 (613)
Q Consensus 293 ~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~ 368 (613)
... ..+++++. +++++.+|+++.+ +|+.+|+|++|+.++|.+||+.++..... .-...
T Consensus 140 gg~~~~~~i~ia~-----tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~-------------~~~~~ 201 (274)
T 2x8a_A 140 GLEARQQVFIMAA-----TNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK-------------PPLDA 201 (274)
T ss_dssp TCCSTTCEEEEEE-----ESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT-------------TBBCT
T ss_pred cccccCCEEEEee-----cCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC-------------CCCcc
Confidence 322 23677775 5677889999998 99999999999999999999987532110 11223
Q ss_pred CCCchhhhhh--cccCcccchhhHHHHHHHHHHhhhhcCC---CcccCCCceeechhhHHhhhhhhh
Q 007208 369 DLDCDDLDSI--NVADTMVLGNYIEEIVVSAVSYHLMNNE---DTDYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 369 dl~c~dLa~l--~~~d~~~~~~~ie~iV~~A~s~~l~~~~---~~~~~~~~l~is~~sl~~al~~~q 430 (613)
+++...|+.. |.+ |++++|+.+|..|...++.+.. ......+.+.|+++||..|+..++
T Consensus 202 ~~~~~~la~~~~~~g---~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 265 (274)
T 2x8a_A 202 DVNLEAIAGDLRCDC---YTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVR 265 (274)
T ss_dssp TCCHHHHHTCSGGGS---CCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCC
T ss_pred ccCHHHHHHhhccCC---cCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhc
Confidence 5666666654 345 9999999999999877765321 111123456899999999998553
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.76 E-value=4.7e-18 Score=185.36 Aligned_cols=227 Identities=20% Similarity=0.288 Sum_probs=152.3
Q ss_pred HHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHH
Q 007208 46 KMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALA 125 (613)
Q Consensus 46 ~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA 125 (613)
.+++.+.+.| ..+.-.++|+++.++ +..+..|.+++..++++++++.. .....+.|||+||+++++++||||+|
T Consensus 115 ~~~~~~~~~i-~~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~~---~~~~~~~vLL~GppGtGKT~lA~aia 188 (444)
T 2zan_A 115 KLQNQLQGAI-VIERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFTG---KRTPWRGILLFGPPGTGKSYLAKAVA 188 (444)
T ss_dssp ---------C-BCCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTTTSG---GGCCCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcce-eccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHhhc---cCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3444444444 456678999999999 99999999999999999987442 23455789999999999999999999
Q ss_pred hhh-CCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCcc
Q 007208 126 HFF-EAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTE 204 (613)
Q Consensus 126 ~~f-~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (613)
+++ ++.++.++..++..++ .|.+.
T Consensus 189 ~~~~~~~~~~v~~~~l~~~~---~g~~~---------------------------------------------------- 213 (444)
T 2zan_A 189 TEANNSTFFSISSSDLVSKW---LGESE---------------------------------------------------- 213 (444)
T ss_dssp HHCCSSEEEEECCC------------CC----------------------------------------------------
T ss_pred HHcCCCCEEEEeHHHHHhhh---cchHH----------------------------------------------------
Confidence 999 9999999987775222 11100
Q ss_pred CCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh----
Q 007208 205 GSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS---- 280 (613)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s---- 280 (613)
..++.+|+.+ ...+|+||||||+|.+...+
T Consensus 214 -------------------------------------------~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~ 247 (444)
T 2zan_A 214 -------------------------------------------KLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENE 247 (444)
T ss_dssp -------------------------------------------CTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCC
T ss_pred -------------------------------------------HHHHHHHHHH---HHcCCeEEEEechHhhccCCCCcc
Confidence 0234455543 44699999999999975542
Q ss_pred ----hHHHHHHHHHHHhh---cCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhh
Q 007208 281 ----QRTYNLFQKMMKKL---LASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQ 353 (613)
Q Consensus 281 ----~r~~~~l~~~l~~l---~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~ 353 (613)
.++...|...++.+ ..+|+|||+ ++.+..++.++.++|+..|.|++|+.++|.+||+.++..... ..
T Consensus 248 ~~~~~~~~~~lL~~l~~~~~~~~~v~vI~a-----tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l 321 (444)
T 2zan_A 248 SEAARRIKTEFLVQMQGVGVDNDGILVLGA-----TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SL 321 (444)
T ss_dssp CGGGHHHHHHHHTTTTCSSCCCSSCEEEEE-----ESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-EC
T ss_pred ccHHHHHHHHHHHHHhCcccCCCCEEEEec-----CCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CC
Confidence 23444444444443 356888886 456688999999999999999999999999999987632100 00
Q ss_pred hhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhh
Q 007208 354 AKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHL 402 (613)
Q Consensus 354 ~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l 402 (613)
... +...|+..+.+ |++++|+.+|..|...++
T Consensus 322 ~~~--------------~l~~la~~t~G---~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 322 TEA--------------DFQELGRKTDG---YSGADISIIVRDALMQPV 353 (444)
T ss_dssp CHH--------------HHHHHHHHTTT---CCHHHHHHHHHHHHTHHH
T ss_pred CHH--------------HHHHHHHHcCC---CCHHHHHHHHHHHHHHHH
Confidence 111 12334444444 777777777777765444
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=2.2e-16 Score=160.08 Aligned_cols=233 Identities=17% Similarity=0.306 Sum_probs=171.1
Q ss_pred CcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 60 ESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 60 ~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
.-.++|+++..+ +..+..|...+..++++++..+... ....+.|||+||+++++++||||+|++++.+++.++..+
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 86 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVG--IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHC--CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHH
Confidence 346899999999 9999999999999999887633221 245667999999999999999999999999999988766
Q ss_pred chhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccc
Q 007208 140 FSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASAS 219 (613)
Q Consensus 140 ~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (613)
+...+
T Consensus 87 ~~~~~--------------------------------------------------------------------------- 91 (285)
T 3h4m_A 87 LVKKF--------------------------------------------------------------------------- 91 (285)
T ss_dssp GCCCS---------------------------------------------------------------------------
T ss_pred HHHhc---------------------------------------------------------------------------
Confidence 53110
Q ss_pred cccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhh--------hhHHHHHHHHHH
Q 007208 220 ANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFK--------SQRTYNLFQKMM 291 (613)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~--------s~r~~~~l~~~l 291 (613)
.......++.+++ .+.+..|.||||||+|.+... ..+....+..++
T Consensus 92 -----------------------~~~~~~~~~~~~~---~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 145 (285)
T 3h4m_A 92 -----------------------IGEGASLVKDIFK---LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLL 145 (285)
T ss_dssp -----------------------TTHHHHHHHHHHH---HHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHH
T ss_pred -----------------------cchHHHHHHHHHH---HHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHH
Confidence 0011123344444 444569999999999997542 122333344444
Q ss_pred Hhh-----cCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007208 292 KKL-----LASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEV 364 (613)
Q Consensus 292 ~~l-----~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~v 364 (613)
+.+ .++++||++ ++.+..++..+.+ +|...++|++|+.++|.+||+.++.. .
T Consensus 146 ~~~~~~~~~~~~~vI~t-----tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~----------------~ 204 (285)
T 3h4m_A 146 AEMDGFDARGDVKIIGA-----TNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK----------------M 204 (285)
T ss_dssp HHHHTTCSSSSEEEEEE-----CSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT----------------S
T ss_pred HHhhCCCCCCCEEEEEe-----CCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc----------------C
Confidence 432 246888876 4566889999988 99999999999999999999876422 0
Q ss_pred hhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 365 LSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 365 L~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
-...+.+...|+..+.+ +++++|+.++..|..+++.+... .|+.++|..|+..+
T Consensus 205 ~~~~~~~~~~l~~~~~g---~~~~~i~~l~~~a~~~a~~~~~~--------~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 205 NLAEDVNLEEIAKMTEG---CVGAELKAICTEAGMNAIRELRD--------YVTMDDFRKAVEKI 258 (285)
T ss_dssp CBCTTCCHHHHHHHCTT---CCHHHHHHHHHHHHHHHHHTTCS--------SBCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhccC--------cCCHHHHHHHHHHH
Confidence 01234556677777777 89999999999999888765432 48999999999754
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.71 E-value=6.5e-16 Score=157.75 Aligned_cols=251 Identities=17% Similarity=0.267 Sum_probs=174.5
Q ss_pred HHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHh
Q 007208 47 MEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAH 126 (613)
Q Consensus 47 ~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~ 126 (613)
+.+.+.+.+++ +.-.++|+++.++ +..+..|...+..++.++++.. .+....+.|||+||+++++++||||+|+
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 3 LVQLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPELFT---GLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp HHHHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGGSC---GGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHHHh---cCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 45566666665 3568999999998 9999999999999999888633 3345678899999999999999999999
Q ss_pred hhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCC
Q 007208 127 FFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGS 206 (613)
Q Consensus 127 ~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (613)
+++++++.++..++...+
T Consensus 77 ~~~~~~~~i~~~~l~~~~-------------------------------------------------------------- 94 (297)
T 3b9p_A 77 ECSATFLNISAASLTSKY-------------------------------------------------------------- 94 (297)
T ss_dssp HTTCEEEEEESTTTSSSS--------------------------------------------------------------
T ss_pred HhCCCeEEeeHHHHhhcc--------------------------------------------------------------
Confidence 999999988876653100
Q ss_pred CCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh------
Q 007208 207 FNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS------ 280 (613)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s------ 280 (613)
.......++.+++.+. ..+|.||||||+|.+....
T Consensus 95 ------------------------------------~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~ 135 (297)
T 3b9p_A 95 ------------------------------------VGDGEKLVRALFAVAR---HMQPSIIFIDEVDSLLSERSSSEHE 135 (297)
T ss_dssp ------------------------------------CSCHHHHHHHHHHHHH---HTCSEEEEEETGGGTSBCC-----C
T ss_pred ------------------------------------cchHHHHHHHHHHHHH---HcCCcEEEeccHHHhccccccCcch
Confidence 0001123445555443 4599999999999976543
Q ss_pred --hHHHHHHHHHHHhhc-----CcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhh
Q 007208 281 --QRTYNLFQKMMKKLL-----ASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQ 353 (613)
Q Consensus 281 --~r~~~~l~~~l~~l~-----g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~ 353 (613)
.+....|...++.++ .+|+|+++ ++.+..++.++.++|...+.+++|+.++|..||+.++....
T Consensus 136 ~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~-----tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~---- 206 (297)
T 3b9p_A 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAA-----TNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG---- 206 (297)
T ss_dssp CSHHHHHHHHHHHHHCC------CEEEEEE-----ESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS----
T ss_pred HHHHHHHHHHHHHhcccccCCCCcEEEEee-----cCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC----
Confidence 344455556666654 35778876 45567889999999999999999999999999987753210
Q ss_pred hhhhhhHHHHHhhcCCCCc---hhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCccc----CCCceeechhhHHhhh
Q 007208 354 AKDNRNHIMEVLSANDLDC---DDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDY----RNGKLIISSKSLSHGL 426 (613)
Q Consensus 354 ~~~N~~~I~~vL~~~dl~c---~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~----~~~~l~is~~sl~~al 426 (613)
..++- ..|+..+.+ ++++++..++..|.-.++........ ....-.|+.++|..|+
T Consensus 207 --------------~~~~~~~~~~la~~~~g---~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~ 269 (297)
T 3b9p_A 207 --------------SPLDTEALRRLAKITDG---YSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSL 269 (297)
T ss_dssp --------------CCSCHHHHHHHHHHTTT---CCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHT
T ss_pred --------------CCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHH
Confidence 01111 223344444 88888888888876666543221110 0122358999999999
Q ss_pred hhhh
Q 007208 427 SIFQ 430 (613)
Q Consensus 427 ~~~q 430 (613)
..++
T Consensus 270 ~~~~ 273 (297)
T 3b9p_A 270 KRIR 273 (297)
T ss_dssp TSCC
T ss_pred HHcC
Confidence 7443
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.70 E-value=1.5e-15 Score=160.81 Aligned_cols=255 Identities=14% Similarity=0.221 Sum_probs=174.2
Q ss_pred HHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHH
Q 007208 46 KMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALA 125 (613)
Q Consensus 46 ~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA 125 (613)
.+.+.+.+.+++. .-.++|+++-.. +..+..|.+.+..+++++++.+. +....+.|||+||+++++++||||+|
T Consensus 65 ~~~~~i~~~i~~~-~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 65 KMIELIMNEIMDH-GPPVNWEDIAGV--EFAKATIKEIVVWPMLRPDIFTG---LRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp HHHHHHHHHTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSCG---GGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHHhhcccC-CCCCCHHHhCCh--HHHHHHHHHHHHHHhhChHhHhh---ccCCCceEEEECCCCCCHHHHHHHHH
Confidence 3444566666664 458999999888 99999999999999999886432 33567789999999999999999999
Q ss_pred hhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccC
Q 007208 126 HFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEG 205 (613)
Q Consensus 126 ~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (613)
++++++++.++..++..++
T Consensus 139 ~~~~~~~~~i~~~~l~~~~------------------------------------------------------------- 157 (357)
T 3d8b_A 139 SQSGATFFSISASSLTSKW------------------------------------------------------------- 157 (357)
T ss_dssp HHTTCEEEEEEGGGGCCSS-------------------------------------------------------------
T ss_pred HHcCCeEEEEehHHhhccc-------------------------------------------------------------
Confidence 9999999999887664111
Q ss_pred CCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----
Q 007208 206 SFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS----- 280 (613)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s----- 280 (613)
.......++.+|+.+ ...+|.||||||+|.+...+
T Consensus 158 -------------------------------------~g~~~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 158 -------------------------------------VGEGEKMVRALFAVA---RCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp -------------------------------------TTHHHHHHHHHHHHH---HHTCSEEEEEETHHHHTBC------
T ss_pred -------------------------------------cchHHHHHHHHHHHH---HhcCCeEEEEeCchhhhccCCCCcc
Confidence 111122345555544 34589999999999976542
Q ss_pred ---hHHHHHHHHHHHhh----cCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhh
Q 007208 281 ---QRTYNLFQKMMKKL----LASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQ 353 (613)
Q Consensus 281 ---~r~~~~l~~~l~~l----~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~ 353 (613)
.++...|...++.+ ..+|+|||+ ++.+..+++++.++|...+.|++|+.++|.++|+.++..... ..
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~a-----tn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l 271 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGA-----TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CL 271 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEE-----ESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CC
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEe-----cCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Cc
Confidence 23444455555543 356888876 455678899999999999999999999999999987643100 00
Q ss_pred hhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcc----cCCCceeechhhHHhhhhhh
Q 007208 354 AKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTD----YRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 354 ~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~----~~~~~l~is~~sl~~al~~~ 429 (613)
.... +..|+..+.+ +++++|..++..|.-.++....... .....-.|+.++|..|+..+
T Consensus 272 ~~~~--------------l~~la~~t~G---~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 272 SEEE--------------IEQIVQQSDA---FSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp CHHH--------------HHHHHHHTTT---CCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred cHHH--------------HHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 0111 1223334444 7888888888877666554322111 01223468999999999855
Q ss_pred h
Q 007208 430 Q 430 (613)
Q Consensus 430 q 430 (613)
+
T Consensus 335 ~ 335 (357)
T 3d8b_A 335 R 335 (357)
T ss_dssp G
T ss_pred C
Confidence 4
No 26
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=1.3e-15 Score=152.62 Aligned_cols=235 Identities=14% Similarity=0.228 Sum_probs=162.0
Q ss_pred CCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 57 DGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 57 ~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
+.+...++|+++..+ +..+..|...+.. +++++. |..--....+.|||+||++.++++||||||++++++++.++
T Consensus 3 ~~~~~~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~--~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~ 77 (257)
T 1lv7_A 3 TEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSR--FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77 (257)
T ss_dssp EECSSCCCGGGSCSC--HHHHHHTHHHHHH-HHCGGG--C-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred CccCCCCCHHHhcCc--HHHHHHHHHHHHH-HhCHHH--HHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 456678999999999 9999999887653 666543 21111234567999999999999999999999999998888
Q ss_pred cccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccC
Q 007208 137 VTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNA 216 (613)
Q Consensus 137 ~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (613)
..++...+ .|
T Consensus 78 ~~~~~~~~----------------------------~~------------------------------------------ 87 (257)
T 1lv7_A 78 GSDFVEMF----------------------------VG------------------------------------------ 87 (257)
T ss_dssp SCSSTTSC----------------------------CC------------------------------------------
T ss_pred HHHHHHHh----------------------------hh------------------------------------------
Confidence 76664111 00
Q ss_pred ccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHH
Q 007208 217 SASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYN 285 (613)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~ 285 (613)
.....+..+ +..+....|+||||||+|.+...+ .+...
T Consensus 88 ----------------------------~~~~~~~~~---~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 136 (257)
T 1lv7_A 88 ----------------------------VGASRVRDM---FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 136 (257)
T ss_dssp ----------------------------CCHHHHHHH---HHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHH
T ss_pred ----------------------------hhHHHHHHH---HHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHH
Confidence 000122333 334555689999999999975432 13444
Q ss_pred HHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 007208 286 LFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHI 361 (613)
Q Consensus 286 ~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I 361 (613)
.+...++.+. .+++||++ ++.+..++.++.+ +|...|+|++|+.++|.+||+.++.. ..
T Consensus 137 ~ll~~l~~~~~~~~~~vI~~-----tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~----~~-------- 199 (257)
T 1lv7_A 137 QMLVEMDGFEGNEGIIVIAA-----TNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR----VP-------- 199 (257)
T ss_dssp HHHHHHHTCCSSSCEEEEEE-----ESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT----SC--------
T ss_pred HHHHHhhCcccCCCEEEEEe-----eCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc----CC--------
Confidence 4444455443 45777775 3445678888887 99999999999999999999877532 00
Q ss_pred HHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 362 MEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 362 ~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+.+...++..+.+ ++.++|+.++..|..++..... -.|+.++|..|+..+
T Consensus 200 ----l~~~~~~~~la~~~~G---~~~~dl~~l~~~a~~~a~~~~~--------~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 200 ----LAPDIDAAIIARGTPG---FSGADLANLVNEAALFAARGNK--------RVVSMVEFEKAKDKI 252 (257)
T ss_dssp ----BCTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHHHHH
T ss_pred ----CCccccHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhCC--------CcccHHHHHHHHHHH
Confidence 1123333444554555 8999999999999888865432 248999999999754
No 27
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.68 E-value=1.8e-15 Score=166.51 Aligned_cols=238 Identities=16% Similarity=0.235 Sum_probs=168.7
Q ss_pred cccCCC-CcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeE
Q 007208 54 QIVDGR-ESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKL 132 (613)
Q Consensus 54 ~vv~~~-~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~L 132 (613)
.++.++ ...++|+++... +..+..|.+.+.. ++++.. |..-=...++.|||+||+++++++||||+|++.++++
T Consensus 3 ~~~~~~~~~~~~f~di~G~--~~~~~~l~e~v~~-l~~~~~--~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f 77 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGA--EEAIEELKEVVEF-LKDPSK--FNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF 77 (476)
T ss_dssp --CCCCCSCCCCGGGCCSC--HHHHHHHHHHHHH-HHCTHH--HHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceeccCCCCCCCHHHhCCc--HHHHHHHHHHHHH-hhChHH--HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 345566 889999999999 9999999988764 666543 2221123456699999999999999999999999999
Q ss_pred EEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccc
Q 007208 133 LLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPAL 212 (613)
Q Consensus 133 L~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (613)
+.++..+|...+ .|
T Consensus 78 ~~is~~~~~~~~----------------------------~g-------------------------------------- 91 (476)
T 2ce7_A 78 FHISGSDFVELF----------------------------VG-------------------------------------- 91 (476)
T ss_dssp EEEEGGGTTTCC----------------------------TT--------------------------------------
T ss_pred eeCCHHHHHHHH----------------------------hc--------------------------------------
Confidence 998887774111 00
Q ss_pred cccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------h
Q 007208 213 RRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------Q 281 (613)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~ 281 (613)
.....++.+|+ .+...+|+||||||+|.+...+ .
T Consensus 92 --------------------------------~~~~~~r~lf~---~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~ 136 (476)
T 2ce7_A 92 --------------------------------VGAARVRDLFA---QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDERE 136 (476)
T ss_dssp --------------------------------HHHHHHHHHHH---HHHHTCSEEEEEETGGGTCCC---------CHHH
T ss_pred --------------------------------ccHHHHHHHHH---HHHhcCCCEEEEechhhhhhhcccccCcCcHHHH
Confidence 00012233444 4555699999999999965432 1
Q ss_pred HHHHHHHHHHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhh
Q 007208 282 RTYNLFQKMMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDN 357 (613)
Q Consensus 282 r~~~~l~~~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N 357 (613)
+....|...++.+. .+|+||++ ++.++.++.++.+ +|+..|.|++|+.++|.+||+.++.. . .
T Consensus 137 ~~l~~LL~~ld~~~~~~~viVIaa-----Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~----~----~ 203 (476)
T 2ce7_A 137 QTLNQLLVEMDGFDSKEGIIVMAA-----TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN----K----P 203 (476)
T ss_dssp HHHHHHHHHHHHSCGGGTEEEEEE-----ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT----S----C
T ss_pred HHHHHHHHHHhccCCCCCEEEEEe-----cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh----C----C
Confidence 34444555555543 46888876 4556778888877 99999999999999999999877532 0 0
Q ss_pred hhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 358 RNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 358 ~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++...|+..+.+ +++++|+.+|..|..++...+ .-.|+.++|..|+...
T Consensus 204 --------l~~~v~l~~la~~t~G---~sgadL~~lv~~Aal~A~~~~--------~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 204 --------LAEDVNLEIIAKRTPG---FVGADLENLVNEAALLAAREG--------RDKITMKDFEEAIDRV 256 (476)
T ss_dssp --------BCTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTT--------CSSBCHHHHHHHHHHH
T ss_pred --------CcchhhHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHcC--------CCeecHHHHHHHHHHH
Confidence 1234556667777766 999999999999987776432 2248899999999754
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.68 E-value=1.7e-15 Score=150.95 Aligned_cols=232 Identities=17% Similarity=0.215 Sum_probs=150.7
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 62 NITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 62 ~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
+++|+++-++ +..+..|.+.+.. +++++. |..--....+.|||+||+++++++||||+|++++.+++.++..++.
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~--~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPER--FLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFV 76 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC--------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTS
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHH--HHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence 5899999999 9999999887765 566553 2221124567799999999999999999999999999999887763
Q ss_pred hhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccccc
Q 007208 142 LKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASAN 221 (613)
Q Consensus 142 ~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (613)
..+
T Consensus 77 ~~~----------------------------------------------------------------------------- 79 (262)
T 2qz4_A 77 EVI----------------------------------------------------------------------------- 79 (262)
T ss_dssp SSS-----------------------------------------------------------------------------
T ss_pred hhc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred cccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh------------hHHHHHHHH
Q 007208 222 ISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS------------QRTYNLFQK 289 (613)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s------------~r~~~~l~~ 289 (613)
.......++.+|+ .+....|.||||||+|.+...+ ++....|..
T Consensus 80 ---------------------~~~~~~~~~~~~~---~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~ 135 (262)
T 2qz4_A 80 ---------------------GGLGAARVRSLFK---EARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLV 135 (262)
T ss_dssp ---------------------TTHHHHHHHHHHH---HHHHTCSEEEEEECC-------------------CHHHHHHHH
T ss_pred ---------------------cChhHHHHHHHHH---HHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHH
Confidence 0000112334444 3444589999999999975432 122233333
Q ss_pred HHHhh--cCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 007208 290 MMKKL--LASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVL 365 (613)
Q Consensus 290 ~l~~l--~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL 365 (613)
.++.+ ..+++||++ ++.+..++.++.+ +|...+.|++|+.++|.++|+.++..-. ....
T Consensus 136 ~~~~~~~~~~~~vi~~-----tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~----~~~~-------- 198 (262)
T 2qz4_A 136 EMDGMGTTDHVIVLAS-----TNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK----LTQS-------- 198 (262)
T ss_dssp HHHTCCTTCCEEEEEE-----ESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT----CCBT--------
T ss_pred HhhCcCCCCCEEEEec-----CCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC----CCcc--------
Confidence 34443 246777776 4455778888988 9999999999999999999998875311 0000
Q ss_pred hcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 366 SANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 366 ~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
.++.+..|+..+.+ +++++|..++..|..+++.+. .-.|+.++|..|+..+
T Consensus 199 --~~~~~~~l~~~~~g---~~~~~l~~l~~~a~~~a~~~~--------~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 199 --STFYSQRLAELTPG---FSGADIANICNEAALHAAREG--------HTSVHTLNFEYAVERV 249 (262)
T ss_dssp --HHHHHHHHHHTCTT---CCHHHHHHHHHHHHTC----------------CCBCCHHHHHHHH
T ss_pred --hhhHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHcC--------CCCCCHHHHHHHHHHh
Confidence 00112445556666 889999999999987776432 3358889999999744
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.67 E-value=2.1e-15 Score=160.99 Aligned_cols=243 Identities=20% Similarity=0.293 Sum_probs=168.9
Q ss_pred cccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEE
Q 007208 54 QIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLL 133 (613)
Q Consensus 54 ~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL 133 (613)
.+++ +.-.++|+++.+. +..+..|...+..++.++++.. .+....+.|||+||+++++++||+|+|++++++++
T Consensus 104 ~~~~-~~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 104 EIVD-NGTAVKFDDIAGQ--DLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp TTBC-CSCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred hhhc-cCCCCChHHhCCH--HHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 4444 3457899999998 9999999999999999888643 23355788999999999999999999999999999
Q ss_pred EeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcccc
Q 007208 134 LLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALR 213 (613)
Q Consensus 134 ~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (613)
.++..++...+ .|
T Consensus 178 ~v~~~~l~~~~----------------------------~g--------------------------------------- 190 (389)
T 3vfd_A 178 NISAASLTSKY----------------------------VG--------------------------------------- 190 (389)
T ss_dssp EECSCCC-------------------------------------------------------------------------
T ss_pred EeeHHHhhccc----------------------------cc---------------------------------------
Confidence 99987764211 00
Q ss_pred ccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHH
Q 007208 214 RNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYN 285 (613)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~ 285 (613)
.....++.+|+.+ .+.+|.||||||+|.++... .++..
T Consensus 191 -------------------------------~~~~~~~~~~~~a---~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~ 236 (389)
T 3vfd_A 191 -------------------------------EGEKLVRALFAVA---RELQPSIIFIDQVDSLLCERREGEHDASRRLKT 236 (389)
T ss_dssp --------------------------------CHHHHHHHHHHH---HHSSSEEEEEETGGGGC--------CTHHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHH---HhcCCeEEEEECchhhcccCCCccchHHHHHHH
Confidence 0012345555544 44599999999999976542 34444
Q ss_pred HHHHHHHhh----cCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 007208 286 LFQKMMKKL----LASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHI 361 (613)
Q Consensus 286 ~l~~~l~~l----~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I 361 (613)
.|...++.+ ...|+|||+ ++.+..++..+.++|...|.|++|+.++|.+||+.++....
T Consensus 237 ~ll~~l~~~~~~~~~~v~vI~a-----tn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~------------ 299 (389)
T 3vfd_A 237 EFLIEFDGVQSAGDDRVLVMGA-----TNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG------------ 299 (389)
T ss_dssp HHHHHHHHHC-----CEEEEEE-----ESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC------------
T ss_pred HHHHHhhcccccCCCCEEEEEe-----cCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC------------
Confidence 555555544 346888886 45567889999999999999999999999999987753210
Q ss_pred HHHhhcCCCCc---hhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCccc----CCCceeechhhHHhhhhhh
Q 007208 362 MEVLSANDLDC---DDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDY----RNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 362 ~~vL~~~dl~c---~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~----~~~~l~is~~sl~~al~~~ 429 (613)
..+.- ..|+..+.+ +++++|..++..|.-.++........ ..+.-.|+.++|..++..+
T Consensus 300 ------~~l~~~~~~~la~~~~g---~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 300 ------SPLTQKELAQLARMTDG---YSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp ------CCSCHHHHHHHHHHTTT---CCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred ------CCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 11122 234444444 88889988888887666654322111 1233468999999999744
No 30
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=8e-15 Score=169.26 Aligned_cols=231 Identities=16% Similarity=0.181 Sum_probs=132.7
Q ss_pred HHHHhhhcCCCEEEEEccchhhhhh------hhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEE
Q 007208 255 RVLCYVSKTSPIVVYLRDVDKLIFK------SQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIE 328 (613)
Q Consensus 255 evl~s~s~~~P~IL~idDiD~~l~~------s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~Ie 328 (613)
.++..+....|.||||||+|.++.. ..+....|+.+++ .+.+.+||+.+.+........+.++.++|. .|.
T Consensus 269 ~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~ 345 (758)
T 1r6b_X 269 ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KID 345 (758)
T ss_dssp HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEE
T ss_pred HHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEE
Confidence 3344455568999999999997542 2333333433332 256777776443211122345678889998 799
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCc--h---hhhhhcccC--cccchhhHHHHHHHHHHhh
Q 007208 329 IRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDC--D---DLDSINVAD--TMVLGNYIEEIVVSAVSYH 401 (613)
Q Consensus 329 I~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c--~---dLa~l~~~d--~~~~~~~ie~iV~~A~s~~ 401 (613)
|++|+.++|.+||+.++...... +++.. . .+..++... ..+++..+-.++..|....
T Consensus 346 v~~p~~~e~~~il~~l~~~~~~~----------------~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~ 409 (758)
T 1r6b_X 346 ITEPSIEETVQIINGLKPKYEAH----------------HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARA 409 (758)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH----------------HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh----------------cCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHH
Confidence 99999999999999876442210 11111 1 111222221 1144556666777776554
Q ss_pred hhcCCCcccCCCceeechhhHHhhhhhhhccccCCcchhHHHHhhhcccCCCcccCCCCCCCCCcccCCCCCchhhhhhc
Q 007208 402 LMNNEDTDYRNGKLIISSKSLSHGLSIFQEGKASGKDTLKLEAQAEKSNEGGRKEAKGPKPAAGTEIMKPESTSEAEKSA 481 (613)
Q Consensus 402 l~~~~~~~~~~~~l~is~~sl~~al~~~q~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 481 (613)
.+... ..++-.++.+++..+++.+....
T Consensus 410 ~~~~~----~~~~~~v~~~di~~~~~~~~~ip------------------------------------------------ 437 (758)
T 1r6b_X 410 RLMPV----SKRKKTVNVADIESVVARIARIP------------------------------------------------ 437 (758)
T ss_dssp HHSSS----CCCCCSCCHHHHHHHHHHHSCCC------------------------------------------------
T ss_pred hcccc----cccCCccCHHHHHHHHHHhcCCC------------------------------------------------
Confidence 33211 11233578888888886432100
Q ss_pred CCCCCCCCCCcccccCCCCCCCCchHHh--hhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCC--
Q 007208 482 AAPNKDGDSSVPAAAKAPEVPPDNEFEK--RIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLL-- 557 (613)
Q Consensus 482 s~~~~~~~~~~~~~~~~~~~~~~~e~e~--~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i-- 557 (613)
.. + ...++... .+.. .-..+|.|.+++++.+...+.. ...|+
T Consensus 438 ---~~----------~----~~~~~~~~l~~l~~---------~l~~~v~g~~~~~~~l~~~i~~--------~~~g~~~ 483 (758)
T 1r6b_X 438 ---EK----------S----VSQSDRDTLKNLGD---------RLKMLVFGQDKAIEALTEAIKM--------ARAGLGH 483 (758)
T ss_dssp ---CC----------C----SSSSHHHHHHHHHH---------HHTTTSCSCHHHHHHHHHHHHH--------HHTTCSC
T ss_pred ---cc----------c----cchhHHHHHHHHHH---------HHHhhccCHHHHHHHHHHHHHH--------HhcccCC
Confidence 00 0 00111110 0000 0123677889998888877653 11122
Q ss_pred --CCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 558 --KPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 558 --~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
.|...+||+||||||||++|+++|..++.+|+.
T Consensus 484 ~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~ 518 (758)
T 1r6b_X 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_dssp TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence 233469999999999999999999999999873
No 31
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.58 E-value=6e-14 Score=140.32 Aligned_cols=232 Identities=15% Similarity=0.194 Sum_probs=157.4
Q ss_pred CCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 57 DGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 57 ~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
-.+.-.++|+++..+ ++.+..|...... +.++...+.. ++ ...++|+|.||++.++++|+|+||++.++.++.++
T Consensus 7 ~~~~~~~~~~~i~g~--~~~~~~l~~l~~~-~~~~~~~~~~-~~-~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGA--EEAKEELKEIVEF-LKNPSRFHEM-GA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp -CCCCSCCGGGCCSC--HHHHHHHHHHHHH-HHCHHHHHHT-TC-CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCCCCHHHhCCc--HHHHHHHHHHHHH-HHCHHHHHHc-CC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 356778999999998 8999988877654 4443321111 12 23445999999999999999999999999998888
Q ss_pred cccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccC
Q 007208 137 VTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNA 216 (613)
Q Consensus 137 ~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (613)
..++...+ .
T Consensus 82 ~~~~~~~~---~-------------------------------------------------------------------- 90 (254)
T 1ixz_A 82 GSDFVEMF---V-------------------------------------------------------------------- 90 (254)
T ss_dssp HHHHHHSC---T--------------------------------------------------------------------
T ss_pred HHHHHHHH---h--------------------------------------------------------------------
Confidence 77664111 0
Q ss_pred ccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHH
Q 007208 217 SASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQ 288 (613)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~ 288 (613)
......+. .++..+....|.|++|||+|.+.... .+....+.
T Consensus 91 ---------------------------~~~~~~i~---~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~ 140 (254)
T 1ixz_A 91 ---------------------------GVGAARVR---DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN 140 (254)
T ss_dssp ---------------------------THHHHHHH---HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH
T ss_pred ---------------------------hHHHHHHH---HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH
Confidence 00001123 33444445689999999999965321 12233344
Q ss_pred HHHHhhcC-----cEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 007208 289 KMMKKLLA-----SVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHI 361 (613)
Q Consensus 289 ~~l~~l~g-----~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I 361 (613)
.++..+++ .++++++ ++++..+++++.+ +|+..|+|++|+.++|.+||+.++..
T Consensus 141 ~ll~~l~g~~~~~~~i~~a~-----t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-------------- 201 (254)
T 1ixz_A 141 QLLVEMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-------------- 201 (254)
T ss_dssp HHHHHHHTCCTTCCEEEEEE-----ESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHhCCCCCCCEEEEEc-----cCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--------------
Confidence 44444442 2566665 4556778999987 89999999999999999999865321
Q ss_pred HHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhh
Q 007208 362 MEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGL 426 (613)
Q Consensus 362 ~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al 426 (613)
.-...+++...|+..+.+ +++++|+.++..|..++..... -.|+.++|..++
T Consensus 202 --~~~~~~~~~~~la~~~~G---~~~~dl~~~~~~a~~~a~~~~~--------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 202 --KPLAEDVDLALLAKRTPG---FVGADLENLLNEAALLAAREGR--------RKITMKDLEEAA 253 (254)
T ss_dssp --SCBCTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHT
T ss_pred --CCCCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcC--------CCcCHHHHHHHh
Confidence 001234555566666666 8999999999999888765332 248889998876
No 32
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.58 E-value=8.3e-16 Score=154.64 Aligned_cols=236 Identities=17% Similarity=0.270 Sum_probs=158.3
Q ss_pred cCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEe
Q 007208 56 VDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLL 135 (613)
Q Consensus 56 v~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~l 135 (613)
++.+...++|+++.++ +..+..|...+. .+++++. |..--....+.|||+||+++++++||||||++++.+++.+
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~--~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVD-FLKYPER--YANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHH-HHHCHHH--HHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHH-HHHChHH--HHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 4677888999999998 889999988665 3666653 2211123455699999999999999999999999988777
Q ss_pred ecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcccccc
Q 007208 136 DVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRN 215 (613)
Q Consensus 136 D~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (613)
+..++...+ .|.+. .
T Consensus 76 ~~~~~~~~~---~~~~~-------------------------------------------~------------------- 90 (268)
T 2r62_A 76 GGSSFIEMF---VGLGA-------------------------------------------S------------------- 90 (268)
T ss_dssp CSCTTTTSC---SSSCS-------------------------------------------S-------------------
T ss_pred chHHHHHhh---cchHH-------------------------------------------H-------------------
Confidence 766654111 00000 0
Q ss_pred CccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhhh------------HH
Q 007208 216 ASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQ------------RT 283 (613)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~------------r~ 283 (613)
.++.+|+ .+....|.||||||+|.+...+. +.
T Consensus 91 ---------------------------------~~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~ 134 (268)
T 2r62_A 91 ---------------------------------RVRDLFE---TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQT 134 (268)
T ss_dssp ---------------------------------SSSTTHH---HHHHSCSCEEEESCGGGTTC----------CCCSCSS
T ss_pred ---------------------------------HHHHHHH---HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHH
Confidence 0011122 23345899999999999754321 12
Q ss_pred HHHHHHHHHhhc---CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhh
Q 007208 284 YNLFQKMMKKLL---ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNR 358 (613)
Q Consensus 284 ~~~l~~~l~~l~---g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~ 358 (613)
...|...++... .+|+||++ ++.+..++.++.+ +|...|+|++|+.++|.++|+.++.. . +
T Consensus 135 ~~~ll~~l~~~~~~~~~v~vi~t-----tn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~----~- 200 (268)
T 2r62_A 135 LNQLLAEMDGFGSENAPVIVLAA-----TNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG----V----K- 200 (268)
T ss_dssp TTTTTTTTTCSSCSCSCCEEEEC-----BSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS----S----C-
T ss_pred HHHHHHHhhCcccCCCCEEEEEe-----cCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc----C----C-
Confidence 222223333332 34777775 4455668888887 99999999999999999999876521 0 0
Q ss_pred hHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 359 NHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 359 ~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...+++...|+..+.+ +++++|..++..|...+.... .-.|+.++|..++..+
T Consensus 201 -------~~~~~~~~~la~~~~g---~~g~dl~~l~~~a~~~a~~~~--------~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 201 -------LANDVNLQEVAKLTAG---LAGADLANIINEAALLAGRNN--------QKEVRQQHLKEAVERG 253 (268)
T ss_dssp -------CCSSCCTTTTTSSSCS---SCHHHHHHHHHHHHHTTSSSC--------CCSCCHHHHHTSCTTC
T ss_pred -------CCCccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc--------cCCcCHHHHHHHHHHH
Confidence 1234555666666665 899999999999987775432 2248889999998743
No 33
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=155.88 Aligned_cols=92 Identities=34% Similarity=0.484 Sum_probs=76.8
Q ss_pred CCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec----cCCC
Q 007208 520 EISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS----PCLP 595 (613)
Q Consensus 520 ~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~----v~~~ 595 (613)
.|+++|+||||++++++.|++.+.+|+++|+.|...++.+++|++|+||||||||++|++||.+++.+++.. +...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 368999999999999999999999999999999999999999999999999999999999999999998832 2234
Q ss_pred cchHHHHHHHHHHHHh
Q 007208 596 SLPNGLVRMRRMFELY 611 (613)
Q Consensus 596 ~lge~e~~Ir~IF~~A 611 (613)
+.++.+++|+.+|+.|
T Consensus 84 ~~~~~~~~i~~vf~~a 99 (274)
T 2x8a_A 84 YVGESERAVRQVFQRA 99 (274)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 6788899999999987
No 34
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.57 E-value=3.4e-14 Score=157.30 Aligned_cols=238 Identities=15% Similarity=0.228 Sum_probs=166.2
Q ss_pred cccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEE
Q 007208 54 QIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLL 133 (613)
Q Consensus 54 ~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL 133 (613)
.++... ..++|+++..+ ++.+..|.+.+.. ++++.. |..-=....+.|||+||+++++++||||+|++.++.++
T Consensus 20 ~~~~~~-~~~~f~dv~G~--~~~k~~l~~lv~~-l~~~~~--~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 20 RVLTEA-PKVTFKDVAGA--EEAKEELKEIVEF-LKNPSR--FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp EEECSC-CCCCTTSSCSC--HHHHHHHHHHHHH-HHCGGG--TTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred eeeccC-CCCCHHHcCCc--HHHHHHHHHHHHH-hhchhh--hhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 344444 78999999999 9999999988764 555442 22111233456999999999999999999999999999
Q ss_pred EeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCcccc
Q 007208 134 LLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALR 213 (613)
Q Consensus 134 ~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (613)
.++..+|...+ .|
T Consensus 94 ~i~g~~~~~~~----------------------------~g--------------------------------------- 106 (499)
T 2dhr_A 94 TASGSDFVEMF----------------------------VG--------------------------------------- 106 (499)
T ss_dssp EEEGGGGTSSC----------------------------TT---------------------------------------
T ss_pred EEehhHHHHhh----------------------------hh---------------------------------------
Confidence 99988774110 00
Q ss_pred ccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHH
Q 007208 214 RNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYN 285 (613)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~ 285 (613)
... +.+..++..+....|+|+||||+|.+...+ .+...
T Consensus 107 -------------------------------~~~---~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~ 152 (499)
T 2dhr_A 107 -------------------------------VGA---ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ 152 (499)
T ss_dssp -------------------------------HHH---HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHH
T ss_pred -------------------------------hHH---HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHH
Confidence 000 112233444545689999999999965321 22334
Q ss_pred HHHHHHHhhcC-----cEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhh
Q 007208 286 LFQKMMKKLLA-----SVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNR 358 (613)
Q Consensus 286 ~l~~~l~~l~g-----~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~ 358 (613)
.+..++..+++ .++++++ +++++.+++++.+ +|...|+|++|+.++|.+||+.++..
T Consensus 153 ~l~~LL~~Ldg~~~~~~viviAa-----tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~----------- 216 (499)
T 2dhr_A 153 TLNQLLVEMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG----------- 216 (499)
T ss_dssp HHHHHHHHGGGCCSSCCCEEEEC-----CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS-----------
T ss_pred HHHHHHHHhcccccCccEEEEEe-----cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc-----------
Confidence 45555555542 3677775 5566778999987 89999999999999999999866421
Q ss_pred hHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhh
Q 007208 359 NHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 359 ~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q 430 (613)
+-...+++...|+..+.+ +++++++.+|..|..++..+. +-.|+.++|..++....
T Consensus 217 -----~~l~~dv~l~~lA~~t~G---~~gadL~~lv~~Aa~~A~~~~--------~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 217 -----KPLAEDVDLALLAKRTPG---FVGADLENLLNEAALLAAREG--------RRKITMKDLEEAADRVM 272 (499)
T ss_dssp -----SCCCCSSTTHHHHTTSCS---CCHHHHHHHHHHHHHHHTTTC--------CSSCCSHHHHHHHHHHT
T ss_pred -----CCCChHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhC--------CCccCHHHHHHHHHHHh
Confidence 011234555666666666 999999999999987775432 23488899999997553
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=159.00 Aligned_cols=93 Identities=33% Similarity=0.577 Sum_probs=82.3
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh-CCceeec----cC
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL-GQASLMS----PC 593 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~-g~~fi~~----v~ 593 (613)
+.++++|+||+|++++++.|++.+.+|+++|++|.. +..+++|+|||||||||||++|+++|+++ +.+|+.. ..
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 456899999999999999999999999999999985 46788999999999999999999999999 8888832 23
Q ss_pred CCcchHHHHHHHHHHHHhh
Q 007208 594 LPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 594 ~~~lge~e~~Ir~IF~~A~ 612 (613)
+.+.|+.++.++++|+.|.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~ 102 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLAR 102 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 4567888999999999874
No 36
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.56 E-value=1.2e-13 Score=140.44 Aligned_cols=230 Identities=16% Similarity=0.217 Sum_probs=157.8
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVT 138 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~ 138 (613)
..-.++|++|..+ ++.+..|...... +..+...+- -++. ..+.|+|.||++.++++|+|+||++.++.++.++..
T Consensus 33 ~~~~~~~~~i~g~--~~~~~~l~~l~~~-~~~~~~l~~-~~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~ 107 (278)
T 1iy2_A 33 EAPKVTFKDVAGA--EEAKEELKEIVEF-LKNPSRFHE-MGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 107 (278)
T ss_dssp CCCCCCGGGSSSC--HHHHHHHHHHHHH-HHCHHHHHH-TTCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCHHHhCCh--HHHHHHHHHHHHH-HHCHHHHHH-cCCC-CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHH
Confidence 3478999999998 9999988877654 333322111 1222 334599999999999999999999999999988877
Q ss_pred cchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcc
Q 007208 139 DFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASA 218 (613)
Q Consensus 139 d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (613)
++...+. |
T Consensus 108 ~~~~~~~----------------------------~-------------------------------------------- 115 (278)
T 1iy2_A 108 DFVEMFV----------------------------G-------------------------------------------- 115 (278)
T ss_dssp HHHHSTT----------------------------T--------------------------------------------
T ss_pred HHHHHHh----------------------------h--------------------------------------------
Confidence 7641110 0
Q ss_pred ccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh--------hHHHHHHHHH
Q 007208 219 SANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS--------QRTYNLFQKM 290 (613)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s--------~r~~~~l~~~ 290 (613)
.....+. .++..+....|.|++|||+|.+.... .+....+..+
T Consensus 116 --------------------------~~~~~i~---~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 166 (278)
T 1iy2_A 116 --------------------------VGAARVR---DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 166 (278)
T ss_dssp --------------------------HHHHHHH---HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH
T ss_pred --------------------------HHHHHHH---HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH
Confidence 0001123 33444445689999999999965321 2234445566
Q ss_pred HHhhcCc-----EEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007208 291 MKKLLAS-----VLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIME 363 (613)
Q Consensus 291 l~~l~g~-----VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~ 363 (613)
+..++++ +++++. ++++..+++++.+ +|...|+|++|+.++|.+||+.++..
T Consensus 167 l~~lsgg~~~~~~i~~a~-----t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~---------------- 225 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG---------------- 225 (278)
T ss_dssp HHHHTTCCTTCCEEEEEE-----ESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT----------------
T ss_pred HHHHhCCCCCCCEEEEEe-----cCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc----------------
Confidence 6666542 566664 4455678999887 89999999999999999999865421
Q ss_pred HhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhh
Q 007208 364 VLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGL 426 (613)
Q Consensus 364 vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al 426 (613)
.-...+++...|+..+.+ +++++|+.+|..|..++.... .-.|+.++|..|+
T Consensus 226 ~~~~~~~~~~~la~~~~G---~~~~dl~~l~~~a~~~a~~~~--------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 226 KPLAEDVDLALLAKRTPG---FVGADLENLLNEAALLAAREG--------RRKITMKDLEEAA 277 (278)
T ss_dssp SCBCTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTT--------CCSBCHHHHHHHT
T ss_pred CCCCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhC--------CCCcCHHHHHHHh
Confidence 001234555666666666 889999999999988776532 2248889998886
No 37
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.55 E-value=1.1e-13 Score=162.20 Aligned_cols=88 Identities=13% Similarity=0.271 Sum_probs=52.4
Q ss_pred HHHhhhc-CCCEEEEEccchhhhhhh-----hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEe
Q 007208 256 VLCYVSK-TSPIVVYLRDVDKLIFKS-----QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEI 329 (613)
Q Consensus 256 vl~s~s~-~~P~IL~idDiD~~l~~s-----~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI 329 (613)
++..+.. ..|+||||||++.+.... .++.+.|+.+++. +.+.+||+.+.+.... ..++.++.++|.. |.|
T Consensus 254 ~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~-~~~d~aL~rRf~~-i~l 329 (854)
T 1qvr_A 254 VIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYRE-IEKDPALERRFQP-VYV 329 (854)
T ss_dssp HHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHH-HTTCTTTCSCCCC-EEE
T ss_pred HHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhh-hccCHHHHhCCce-EEe
Confidence 3334444 479999999999976432 3455666766654 5666666543321111 3457889999986 999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 007208 330 RPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 330 ~~P~ee~Rl~Ilk~~L~~ 347 (613)
++|+.+++.+||+.++..
T Consensus 330 ~~p~~~e~~~iL~~~~~~ 347 (854)
T 1qvr_A 330 DEPTVEETISILRGLKEK 347 (854)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhhh
Confidence 999999999999877654
No 38
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.53 E-value=1.3e-15 Score=177.60 Aligned_cols=216 Identities=18% Similarity=0.308 Sum_probs=156.5
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
-.++|++...+ +..|..|.+....++++++. |.+--....++|||+||+++++++||||||+++++.++.++..++
T Consensus 472 ~~v~~~di~gl--~~vk~~l~~~v~~~~~~~~~--~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 472 PQVTWEDIGGL--EDVKRELQELVQYPVEHPDK--FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCSSCSSSCC--CCHHHHHHTTTTSSSSSCTT--TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred ccccccccccc--hhhhhhHHHHHHhhhhchHH--HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 36789998888 99999999999888888764 332223566789999999999999999999999988887776665
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
..+| .|.
T Consensus 548 ~~~~---~g~---------------------------------------------------------------------- 554 (806)
T 1ypw_A 548 LTMW---FGE---------------------------------------------------------------------- 554 (806)
T ss_dssp TTCC---TTT----------------------------------------------------------------------
T ss_pred hhhh---cCc----------------------------------------------------------------------
Confidence 4111 000
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-----------hHHHHHHHH
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-----------QRTYNLFQK 289 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-----------~r~~~~l~~ 289 (613)
....+..+|+. +....|+||||||+|.+...+ .++++.|..
T Consensus 555 -------------------------~~~~i~~~f~~---a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~ 606 (806)
T 1ypw_A 555 -------------------------SEANVREIFDK---ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 606 (806)
T ss_dssp -------------------------SSHHHHHHHHH---HHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHT
T ss_pred -------------------------cHHHHHHHHHH---HHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHH
Confidence 01134445554 444589999999999976542 234444444
Q ss_pred HHHhhc--CcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 007208 290 MMKKLL--ASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVL 365 (613)
Q Consensus 290 ~l~~l~--g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL 365 (613)
.|+.+. .+|+||++ +|.++.+++++.+ +|...|.+++|+.++|.+||+.++.+. -
T Consensus 607 ~ld~~~~~~~v~vI~t-----TN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~----------------~ 665 (806)
T 1ypw_A 607 EMDGMSTKKNVFIIGA-----TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS----------------P 665 (806)
T ss_dssp TCC------CCBCCCC-----CBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----------------
T ss_pred HHhcccccCCeEEEEe-----cCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC----------------C
Confidence 444433 45778875 6677889999999 999999999999999999999775320 0
Q ss_pred hcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcC
Q 007208 366 SANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNN 405 (613)
Q Consensus 366 ~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~ 405 (613)
...+++...|+..+.+ |++++|+.++..|...++.+.
T Consensus 666 ~~~~~~l~~la~~t~g---~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 666 VAKDVDLEFLAKMTNG---FSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp ---CCCCSCSCGGGSS---SCCHHHHHHHHHHHHHHHSCC
T ss_pred CCcccCHHHHHHhccc---cCHHHHHHHHHHHHHHHHHHH
Confidence 1245666777777776 999999999999988887654
No 39
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=5.6e-14 Score=162.48 Aligned_cols=79 Identities=11% Similarity=0.233 Sum_probs=50.3
Q ss_pred HHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHH
Q 007208 257 LCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDEN 336 (613)
Q Consensus 257 l~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~ 336 (613)
+..+....|.||||| +..+..+.|...++ .+.+.+||+.+.+.......++.++.++| ..|.|++|+.++
T Consensus 260 ~~~~~~~~~~iLfiD-------~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~ 329 (758)
T 3pxi_A 260 MDEIRQAGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDE 329 (758)
T ss_dssp HHHHHTCCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHH
T ss_pred HHHHHhcCCEEEEEc-------CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHH
Confidence 334445699999999 33344444444443 46687888644322111235788999999 679999999999
Q ss_pred HHHHHHHHH
Q 007208 337 HLVSWKSQL 345 (613)
Q Consensus 337 Rl~Ilk~~L 345 (613)
|.+||+.++
T Consensus 330 ~~~il~~~~ 338 (758)
T 3pxi_A 330 SIQILQGLR 338 (758)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999998654
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.52 E-value=5.3e-15 Score=156.61 Aligned_cols=98 Identities=32% Similarity=0.547 Sum_probs=78.8
Q ss_pred CCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec--
Q 007208 514 EVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS-- 591 (613)
Q Consensus 514 ~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~-- 591 (613)
..+....+.++|+||+|++++++.|++.+.+|+++|++|.. +..+++++|||||||||||++|+++|++++.+|+..
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 33445667899999999999999999999999999999987 567889999999999999999999999999999832
Q ss_pred --cCCCcchHHHHHHHHHHHHhh
Q 007208 592 --PCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 592 --v~~~~lge~e~~Ir~IF~~A~ 612 (613)
..+.+.|+.++.++.+|+.|.
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~ 140 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMAR 140 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHH
T ss_pred HHHhhhhcchHHHHHHHHHHHHH
Confidence 234567888999999999874
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.51 E-value=2.6e-15 Score=155.02 Aligned_cols=94 Identities=30% Similarity=0.510 Sum_probs=82.6
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL---- 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~---- 594 (613)
+.+.++|+||+|++++++.|++.+.+|+.+|+.|...++.+++++|||||||||||++|+++|++++.+|+...+.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 3468999999999999999999999999999999998999999999999999999999999999999999843222
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.+.|+.++.++.+|+.|.
T Consensus 88 ~~~g~~~~~~~~~f~~a~ 105 (301)
T 3cf0_A 88 MWFGESEANVREIFDKAR 105 (301)
T ss_dssp HHHTTCTTHHHHHHHHHH
T ss_pred hhcCchHHHHHHHHHHHH
Confidence 234566778999999874
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.50 E-value=9.6e-15 Score=152.05 Aligned_cols=93 Identities=31% Similarity=0.571 Sum_probs=83.6
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc----CC
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP----CL 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v----~~ 594 (613)
+.++++|+||+|++++++.|++.+.+|+.+|++|.. +..+++++|||||||||||++|+++|++++.+|+... .+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 456899999999999999999999999999999987 5578899999999999999999999999999998432 35
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.+.|+.++.++++|+.|+
T Consensus 90 ~~~g~~~~~~~~~f~~a~ 107 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMAR 107 (322)
T ss_dssp TTGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHH
Confidence 678899999999999875
No 43
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.44 E-value=1.1e-12 Score=135.17 Aligned_cols=186 Identities=11% Similarity=0.111 Sum_probs=117.1
Q ss_pred ccccHHHHHHHHHHHHhhcCCCcccccccCC-CCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhc
Q 007208 70 YYLSGQTRALLTSAAYVHLKHTEVSKYTRNL-SPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKY 148 (613)
Q Consensus 70 YyLse~tk~~L~~~a~~hL~~~~~~k~~~~L-~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~ 148 (613)
||+++.....+..... .. |.... ...++.|||+||+++++++||||+|+++|++++.++..++..++
T Consensus 9 ~y~~~~~~~~~~~~~~----k~----~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~---- 76 (293)
T 3t15_A 9 FYIAPAFMDKLVVHIT----KN----FLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGN---- 76 (293)
T ss_dssp EECCHHHHHHHHHHHH----HT----TSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC-----
T ss_pred ccCCHHHHHHHHHHHH----HH----HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhcc----
Confidence 7887766554443322 21 11111 23456789999999999999999999999999999987764111
Q ss_pred CCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccccccccccc
Q 007208 149 GGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQ 228 (613)
Q Consensus 149 G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (613)
T Consensus 77 -------------------------------------------------------------------------------- 76 (293)
T 3t15_A 77 -------------------------------------------------------------------------------- 76 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcCCCCcchhHHHHHHHHHHHHHhh-hcCCCEEEEEccchhhhhhhh----------HHHHHHHHHHHhh---
Q 007208 229 SFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYV-SKTSPIVVYLRDVDKLIFKSQ----------RTYNLFQKMMKKL--- 294 (613)
Q Consensus 229 ~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~-s~~~P~IL~idDiD~~l~~s~----------r~~~~l~~~l~~l--- 294 (613)
.......+..+|+.+... .+.+|+||||||+|++..+.. ++...|..+++..
T Consensus 77 --------------~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~ 142 (293)
T 3t15_A 77 --------------AGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 142 (293)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC--
T ss_pred --------------CchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccc
Confidence 001111334444433222 357999999999999766321 3556677777622
Q ss_pred ----------cCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007208 295 ----------LASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIM 362 (613)
Q Consensus 295 ----------~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~ 362 (613)
..+|+||++ +|+++.++.++.+ +|+..|. +|+.++|.+||+.++.
T Consensus 143 ~~~~~~~~~~~~~v~vI~t-----tN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~---------------- 199 (293)
T 3t15_A 143 QLPGMYNKQENARVPIIVT-----GNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFR---------------- 199 (293)
T ss_dssp ---------CCCCCCEEEE-----CSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHG----------------
T ss_pred ccccccccccCCCcEEEEe-----cCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhcc----------------
Confidence 235777775 5667788888886 7777776 6899999999986542
Q ss_pred HHhhcCCCCchhhhhhcccCcccchhhHH
Q 007208 363 EVLSANDLDCDDLDSINVADTMVLGNYIE 391 (613)
Q Consensus 363 ~vL~~~dl~c~dLa~l~~~d~~~~~~~ie 391 (613)
..+++..+++.++.+ |++++|+
T Consensus 200 ----~~~~~~~~l~~~~~~---~~~~~l~ 221 (293)
T 3t15_A 200 ----TDNVPAEDVVKIVDN---FPGQSID 221 (293)
T ss_dssp ----GGCCCHHHHHHHHHH---SCSCCHH
T ss_pred ----CCCCCHHHHHHHhCC---CCcccHH
Confidence 235566667777766 7776665
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.43 E-value=3.8e-14 Score=154.53 Aligned_cols=105 Identities=30% Similarity=0.550 Sum_probs=78.8
Q ss_pred hHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh-
Q 007208 506 EFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL- 584 (613)
Q Consensus 506 e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~- 584 (613)
.+...+...+ ....+.++|+||+|++++++.|.+.+.+|+++|++|.. +..+++++|||||||||||++|+++|+++
T Consensus 115 ~~~~~~~~~i-~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 115 KLQNQLQGAI-VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp ---------C-BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred HHHHHhhcce-eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3444443443 45667899999999999999999999999999999985 45778999999999999999999999999
Q ss_pred CCceeeccC----CCcchHHHHHHHHHHHHhh
Q 007208 585 GQASLMSPC----LPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 585 g~~fi~~v~----~~~lge~e~~Ir~IF~~A~ 612 (613)
+.+|+.... +.+.|+.++.++.+|+.|.
T Consensus 193 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~ 224 (444)
T 2zan_A 193 NSTFFSISSSDLVSKWLGESEKLVKNLFQLAR 224 (444)
T ss_dssp SSEEEEECCC---------CCCTHHHHHHHHH
T ss_pred CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHH
Confidence 889883322 2356777789999998774
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.42 E-value=1.5e-13 Score=139.13 Aligned_cols=94 Identities=30% Similarity=0.569 Sum_probs=84.6
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeec----cCC
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS----PCL 594 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~----v~~ 594 (613)
..+.++|++|+|++++++.|.+.+..|+.+|+.|...++.+++++||+||||||||++|+++|.+++.+|+.. ...
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999832 334
Q ss_pred CcchHHHHHHHHHHHHhh
Q 007208 595 PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~A~ 612 (613)
.+.|..+..++++|..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAK 107 (285)
T ss_dssp CSTTHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHH
Confidence 578888999999998874
No 46
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=134.83 Aligned_cols=91 Identities=27% Similarity=0.393 Sum_probs=75.0
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----Cc
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL----PS 596 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~----~~ 596 (613)
|+++|++|+|++++++.|++++.+ +.+|+.|...+..+++++||+||||||||++|+++|++++.+|+...+. .+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 368899999999999999999887 8999999988999999999999999999999999999999999843332 35
Q ss_pred chHHHHHHHHHHHHhh
Q 007208 597 LPNGLVRMRRMFELYS 612 (613)
Q Consensus 597 lge~e~~Ir~IF~~A~ 612 (613)
.+.+...++.+|+.|.
T Consensus 80 ~~~~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 80 GGLGAARVRSLFKEAR 95 (262)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHH
Confidence 6788889999999875
No 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.38 E-value=2.8e-13 Score=135.62 Aligned_cols=94 Identities=32% Similarity=0.444 Sum_probs=76.9
Q ss_pred CCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccC----
Q 007208 518 SNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPC---- 593 (613)
Q Consensus 518 ~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~---- 593 (613)
...+.++|+||+|++++++.+.+.+.+ +.+|+.|...+..+++|+||+||||||||++|+++|.+++.||+....
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 345678999999999999999998877 889999998888899999999999999999999999999999984322
Q ss_pred CCcchHHHHHHHHHHHHhh
Q 007208 594 LPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 594 ~~~lge~e~~Ir~IF~~A~ 612 (613)
..+.+.+++.++.+|+.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~a~ 101 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAK 101 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHH
Confidence 2345677889999999875
No 48
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.36 E-value=8.8e-13 Score=145.20 Aligned_cols=92 Identities=32% Similarity=0.447 Sum_probs=82.9
Q ss_pred CCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc----CCC
Q 007208 520 EISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP----CLP 595 (613)
Q Consensus 520 ~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v----~~~ 595 (613)
.++++|+||+|++++++++++++.. +++|+.|...+..+++|+||+||||||||++|+++|.+++.||+... ...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5689999999999999999999987 88999999999999999999999999999999999999999998432 234
Q ss_pred cchHHHHHHHHHHHHhh
Q 007208 596 SLPNGLVRMRRMFELYS 612 (613)
Q Consensus 596 ~lge~e~~Ir~IF~~A~ 612 (613)
+.|.++.++|.+|++|.
T Consensus 89 ~~g~~~~~~r~lf~~A~ 105 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAK 105 (476)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHH
Confidence 67889999999999885
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.35 E-value=6.7e-13 Score=135.37 Aligned_cols=103 Identities=32% Similarity=0.537 Sum_probs=85.3
Q ss_pred HhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 508 EKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 508 e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.+.+...++. ..++++|++|+|.+++++.|.+.+.+|+.+|++|.... .+++++||+||||||||++|+++|.+++.+
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 4 VQLILDEIVE-GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp HHHHHTTTBC-CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhcc-CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3444555553 34679999999999999999999999999999998654 567899999999999999999999999999
Q ss_pred eeecc----CCCcchHHHHHHHHHHHHhh
Q 007208 588 SLMSP----CLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 588 fi~~v----~~~~lge~e~~Ir~IF~~A~ 612 (613)
|+... .+.+.|+++..++.+|..|.
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 110 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVAR 110 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHH
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHH
Confidence 98432 23466778889999998764
No 50
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.33 E-value=7.8e-13 Score=141.14 Aligned_cols=104 Identities=33% Similarity=0.556 Sum_probs=82.7
Q ss_pred HHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 507 FEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 507 ~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
++..+..+++. ..+.++|++|+|.+.+++.|.+++.+|+.++++|...+ .+++++|||||||||||++|++||.+++.
T Consensus 97 ~~~~~~~~~~~-~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 97 LANLIMNEIVD-NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp CCTTGGGTTBC-CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhc-cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 33444445544 34578999999999999999999999999999998755 56789999999999999999999999999
Q ss_pred ceeeccCC----CcchHHHHHHHHHHHHhh
Q 007208 587 ASLMSPCL----PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 587 ~fi~~v~~----~~lge~e~~Ir~IF~~A~ 612 (613)
+|+...++ .+.|..+..++.+|+.|+
T Consensus 175 ~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~ 204 (389)
T 3vfd_A 175 TFFNISAASLTSKYVGEGEKLVRALFAVAR 204 (389)
T ss_dssp EEEEECSCCC-------CHHHHHHHHHHHH
T ss_pred cEEEeeHHHhhccccchHHHHHHHHHHHHH
Confidence 99944333 456778889999998875
No 51
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.31 E-value=1.5e-12 Score=137.78 Aligned_cols=106 Identities=29% Similarity=0.490 Sum_probs=87.8
Q ss_pred chHHhhhcCCCccCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 505 NEFEKRIRPEVIPSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 505 ~e~e~~~~~~ii~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+.+.+...++. ..+.++|++|+|++++++.|++.+.+|+.+|++|...+ .+++++||+||||||||++|+++|.++
T Consensus 64 ~~~~~~i~~~i~~-~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 64 PKMIELIMNEIMD-HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp HHHHHHHHHHTBC-CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred hHHHHHHHhhccc-CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3445555555544 34579999999999999999999999999999997654 678899999999999999999999999
Q ss_pred CCceeec----cCCCcchHHHHHHHHHHHHhh
Q 007208 585 GQASLMS----PCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 585 g~~fi~~----v~~~~lge~e~~Ir~IF~~A~ 612 (613)
+.+|+.. ....+.|+.+..++.+|..|.
T Consensus 142 ~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~ 173 (357)
T 3d8b_A 142 GATFFSISASSLTSKWVGEGEKMVRALFAVAR 173 (357)
T ss_dssp TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEehHHhhccccchHHHHHHHHHHHHH
Confidence 9999832 234567888999999998774
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.30 E-value=8.3e-13 Score=145.90 Aligned_cols=91 Identities=35% Similarity=0.558 Sum_probs=83.3
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc----CCCcc
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP----CLPSL 597 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v----~~~~l 597 (613)
.++|++|+|++.+++.|++.+.+|+++|++|...+..+++++|||||||||||++|++||++++.+|+... .+.+.
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 56799999999999999999999999999999999999999999999999999999999999999998432 34577
Q ss_pred hHHHHHHHHHHHHhh
Q 007208 598 PNGLVRMRRMFELYS 612 (613)
Q Consensus 598 ge~e~~Ir~IF~~A~ 612 (613)
|+.+..++.+|+.|.
T Consensus 280 g~~~~~~~~~f~~A~ 294 (489)
T 3hu3_A 280 GESESNLRKAFEEAE 294 (489)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 899999999999875
No 53
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.30 E-value=2.7e-13 Score=136.30 Aligned_cols=95 Identities=27% Similarity=0.379 Sum_probs=79.2
Q ss_pred cCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC--
Q 007208 517 PSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL-- 594 (613)
Q Consensus 517 ~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~-- 594 (613)
.++.+.++|++|+|.+++++.+.+++.. +.+|+.|...+..+++|+||+||||||||++|+++|.+++.+|+...+.
T Consensus 2 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred CccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 4556788999999999999999998886 8999999988889999999999999999999999999999999843322
Q ss_pred --CcchHHHHHHHHHHHHhh
Q 007208 595 --PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 --~~lge~e~~Ir~IF~~A~ 612 (613)
.+.|.++..++.+|+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~ 100 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAK 100 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHH
T ss_pred HHhhcchHHHHHHHHHHHHH
Confidence 234555566777777664
No 54
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.25 E-value=5e-12 Score=139.94 Aligned_cols=91 Identities=32% Similarity=0.487 Sum_probs=81.5
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc----CCCc
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP----CLPS 596 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v----~~~~ 596 (613)
++++|+||+|+++++..+++++.. +.+|..|...+...++|+||+||||||||++|++||.+++.+|+... ...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 689999999999999999999887 88999999999999999999999999999999999999999998432 2346
Q ss_pred chHHHHHHHHHHHHhh
Q 007208 597 LPNGLVRMRRMFELYS 612 (613)
Q Consensus 597 lge~e~~Ir~IF~~A~ 612 (613)
.+...++++.+|+.|+
T Consensus 105 ~g~~~~~v~~lfq~a~ 120 (499)
T 2dhr_A 105 VGVGAARVRDLFETAK 120 (499)
T ss_dssp TTHHHHHHHHHTTTSS
T ss_pred hhhHHHHHHHHHHHHH
Confidence 7888899999999875
No 55
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.23 E-value=8e-12 Score=124.82 Aligned_cols=95 Identities=31% Similarity=0.467 Sum_probs=80.4
Q ss_pred cCCCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc----
Q 007208 517 PSNEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP---- 592 (613)
Q Consensus 517 ~~~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v---- 592 (613)
....+.++|++|+|+++++..+++++.. +.++..+...+...++|++|+||||||||++++++|.+++.+++...
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4556789999999999999999998876 77888998888899999999999999999999999999998888322
Q ss_pred CCCcchHHHHHHHHHHHHhh
Q 007208 593 CLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 593 ~~~~lge~e~~Ir~IF~~A~ 612 (613)
...+.+...+.++.+|+.++
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~ 105 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAK 105 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 12345677788999999874
No 56
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.13 E-value=2.3e-09 Score=108.79 Aligned_cols=257 Identities=14% Similarity=0.236 Sum_probs=152.9
Q ss_pred CCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHH
Q 007208 41 AVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQML 120 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~L 120 (613)
.++++++++.|...|+- . ++.+..|..++..|++...+..-.+. ....+.|||+||++.++++|
T Consensus 3 ~~~~~~l~~~l~~~i~G-------------~--~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIG-------------Q--ADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCHHHHHHHHHTTCCS-------------C--HHHHHHHHHHHHHHHHTTSSCHHHHH-HCCCCCEEEECCTTSSHHHH
T ss_pred cCCHHHHHHHHhhhcCC-------------h--HHHHHHHHHHHHHHHhhhhhcccccc-cCCCceEEEECCCCCCHHHH
Confidence 46778888877665542 2 78888888888777666544221111 13456899999999999999
Q ss_pred HHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCccccc
Q 007208 121 AKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITS 200 (613)
Q Consensus 121 aKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (613)
||++|++++.+++.+|..++... +++|.
T Consensus 67 a~~la~~l~~~~~~i~~~~~~~~---------------------------~~~~~------------------------- 94 (310)
T 1ofh_A 67 ARRLAKLANAPFIKVEATKFTEV---------------------------GYVGK------------------------- 94 (310)
T ss_dssp HHHHHHHHTCCEEEEEGGGGSSC---------------------------CSGGG-------------------------
T ss_pred HHHHHHHhCCCEEEEcchhcccC---------------------------CccCc-------------------------
Confidence 99999999999999998877410 00000
Q ss_pred CCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHH----HHHhhhcCCCEEEEEccchhh
Q 007208 201 RGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYR----VLCYVSKTSPIVVYLRDVDKL 276 (613)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~e----vl~s~s~~~P~IL~idDiD~~ 276 (613)
+....++.+++ .+..+ ..+.||||||+|.+
T Consensus 95 --------------------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 95 --------------------------------------------EVDSIIRDLTDSAGGAIDAV--EQNGIVFIDEIDKI 128 (310)
T ss_dssp --------------------------------------------STTHHHHHHHHTTTTCHHHH--HHHCEEEEECGGGG
T ss_pred --------------------------------------------cHHHHHHHHHHHhhHHHhhc--cCCCEEEEEChhhc
Confidence 00001122222 11111 24789999999996
Q ss_pred hhhh---------hHHHHHHHHHHHhh----------cCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 277 IFKS---------QRTYNLFQKMMKKL----------LASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 277 l~~s---------~r~~~~l~~~l~~l----------~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
.... ..+...|..+++.. ...+++|++...+ .+.+..+++++..+|+..|++++|+++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~l~~R~~~~i~~~~~~~~~~ 207 (310)
T 1ofh_A 129 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ-VARPSDLIPELQGRLPIRVELTALSAADF 207 (310)
T ss_dssp SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCS-SSCGGGSCHHHHHTCCEEEECCCCCHHHH
T ss_pred CccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcc-cCCcccCCHHHHhhCCceEEcCCcCHHHH
Confidence 5432 11344556666643 2356666653322 23456788999999999999999999999
Q ss_pred HHHHHH----HHHHHHHHhhhhhhhhHHHHHhhcCC----CCchhhhhhcccCc-------ccchhhHHHHHHHHHHhhh
Q 007208 338 LVSWKS----QLEEDMKMMQAKDNRNHIMEVLSAND----LDCDDLDSINVADT-------MVLGNYIEEIVVSAVSYHL 402 (613)
Q Consensus 338 l~Ilk~----~L~~d~k~~~~~~N~~~I~~vL~~~d----l~c~dLa~l~~~d~-------~~~~~~ie~iV~~A~s~~l 402 (613)
.+|++. .+.+-.. .+...+ ++-+.+..++.... .-..+.+..++..++....
T Consensus 208 ~~il~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 208 ERILTEPHASLTEQYKA-------------LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp HHHHHSSTTCHHHHHHH-------------HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHH
T ss_pred HHHHHhhHHHHHHHHHH-------------HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhh
Confidence 999984 2211111 111111 22222222222110 1344667777776654432
Q ss_pred hcCCCcccCCCceeechhhHHhhhh
Q 007208 403 MNNEDTDYRNGKLIISSKSLSHGLS 427 (613)
Q Consensus 403 ~~~~~~~~~~~~l~is~~sl~~al~ 427 (613)
.... ........|+.+++..++.
T Consensus 275 ~~~~--~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 275 FSAS--DMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HHGG--GCTTCEEEECHHHHHHHTC
T ss_pred cCCc--cccCCEEEEeeHHHHHHHH
Confidence 2111 1123456799999999986
No 57
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.10 E-value=7.8e-11 Score=119.62 Aligned_cols=92 Identities=32% Similarity=0.475 Sum_probs=78.3
Q ss_pred CCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccC----CC
Q 007208 520 EISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPC----LP 595 (613)
Q Consensus 520 ~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~----~~ 595 (613)
.++++|++|+|++++++.+++++.. +.++..+...++..++|++|+||||||||+++++||..++.+++.... ..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 3689999999999999999998876 678888988888999999999999999999999999999988883221 23
Q ss_pred cchHHHHHHHHHHHHhh
Q 007208 596 SLPNGLVRMRRMFELYS 612 (613)
Q Consensus 596 ~lge~e~~Ir~IF~~A~ 612 (613)
+.+...+.++.+|+.+.
T Consensus 113 ~~~~~~~~i~~~~~~~~ 129 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAK 129 (278)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 45667788999999875
No 58
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.10 E-value=3.5e-10 Score=115.48 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=61.7
Q ss_pred CCEEEEEccchhhhhh------hhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 264 SPIVVYLRDVDKLIFK------SQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~------s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
.+.||||||+|.+... ..+....|...++....+++||++......+....++..+.++|+..|++++|+.+++
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEEL 209 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHH
Confidence 6789999999996533 3456677778888777777666643221111112346788999999999999999999
Q ss_pred HHHHHHHHHH
Q 007208 338 LVSWKSQLEE 347 (613)
Q Consensus 338 l~Ilk~~L~~ 347 (613)
.+||+.++.+
T Consensus 210 ~~il~~~l~~ 219 (309)
T 3syl_A 210 FEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.07 E-value=1.6e-10 Score=126.00 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC--Cceee----cc
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG--QASLM----SP 592 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g--~~fi~----~v 592 (613)
..+...|++|+|++++++.+.+++.. +. .+..+++++|||||||||||++|+++|++++ ++|+. .+
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~-------~~-~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVEL-------IK-SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHH-------HH-TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred cChhhchhhccCHHHHHHHHHHHHHH-------HH-hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 34567799999999999999887753 22 3556789999999999999999999999999 88883 33
Q ss_pred CCCcchHHHHHHHHHHHHh
Q 007208 593 CLPSLPNGLVRMRRMFELY 611 (613)
Q Consensus 593 ~~~~lge~e~~Ir~IF~~A 611 (613)
.+.++|+++. ++++|++|
T Consensus 102 ~~~~~~~~~~-~~~~f~~a 119 (456)
T 2c9o_A 102 YSTEIKKTEV-LMENFRRA 119 (456)
T ss_dssp CCSSSCHHHH-HHHHHHHT
T ss_pred HHHhhhhhHH-HHHHHHHH
Confidence 4568889887 99999987
No 60
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.95 E-value=2e-08 Score=105.01 Aligned_cols=133 Identities=13% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeec------cCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIV------DLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~------ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
.|.||||||+|.+- .+....|.+.++....++++++++.. ...+.+..+++.+.++|.. |++++|+.+++
T Consensus 189 ~~~vl~IDEi~~l~---~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~ 264 (368)
T 3uk6_A 189 IPGVLFIDEVHMLD---IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDT 264 (368)
T ss_dssp CBCEEEEESGGGSB---HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCHHHH
T ss_pred cCceEEEhhccccC---hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCHHHH
Confidence 38999999999963 34445566667766667877776421 0123456788999999977 89999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCc---hhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCc
Q 007208 338 LVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDC---DDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGK 414 (613)
Q Consensus 338 l~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c---~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~ 414 (613)
.++++..+.... ..++- ..|..++.. -..+++..++..|..++..+..
T Consensus 265 ~~il~~~~~~~~------------------~~~~~~~l~~l~~~~~~---G~~r~~~~ll~~a~~~A~~~~~-------- 315 (368)
T 3uk6_A 265 KQILRIRCEEED------------------VEMSEDAYTVLTRIGLE---TSLRYAIQLITAASLVCRKRKG-------- 315 (368)
T ss_dssp HHHHHHHHHHTT------------------CCBCHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHcC------------------CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999998764310 01111 223344442 3567888888888877755332
Q ss_pred eeechhhHHhhhhhh
Q 007208 415 LIISSKSLSHGLSIF 429 (613)
Q Consensus 415 l~is~~sl~~al~~~ 429 (613)
-.|+.+++..++..+
T Consensus 316 ~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 316 TEVQVDDIKRVYSLF 330 (368)
T ss_dssp SSBCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHh
Confidence 348889999999864
No 61
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.90 E-value=9.2e-09 Score=108.38 Aligned_cols=86 Identities=23% Similarity=0.386 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHH
Q 007208 41 AVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQML 120 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~L 120 (613)
-.+++++++.|...|+-- +..+..|..++..|.+...............+.|||+||+++++++|
T Consensus 3 ~~~~~~l~~~l~~~i~G~---------------~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 3 LPTPHEIRNHLDDYVIGQ---------------EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCHHHHHHHHHHHCCSC---------------HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHH
T ss_pred CCCHHHHHHHHHhhccCH---------------HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHH
Confidence 456777887776654322 67888888888777655432223334445678899999999999999
Q ss_pred HHHHHhhhCCeEEEeecccch
Q 007208 121 AKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 121 aKALA~~f~a~LL~lD~~d~~ 141 (613)
|||||++++.+++.+|..++.
T Consensus 68 a~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 68 AETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHHcCCCEEEechHHhc
Confidence 999999999999999987764
No 62
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.90 E-value=3.7e-10 Score=116.26 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=47.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeecc----CCCcchHHHHHHHHHHHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP----CLPSLPNGLVRMRRMFELY 611 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v----~~~~lge~e~~Ir~IF~~A 611 (613)
.+.++|+|+|||||||||||++|++||++++.+|+... .+.++|+.+..|+++|+.|
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 91 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 91 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHH
Confidence 46678899999999999999999999999999999432 3467899999999999988
No 63
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.89 E-value=6.9e-10 Score=121.07 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=70.9
Q ss_pred ccccccHHHHHHHHHHHHCcCCChhhhhcCCCC-CCCceeeecCCCCCchhhhhhhHHhhCCceeecc----CC-CcchH
Q 007208 526 ADIGALEEIKESLQELVMLPLRRPDLFKGGLLK-PCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSP----CL-PSLPN 599 (613)
Q Consensus 526 ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~-~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v----~~-~~lge 599 (613)
++|+|++++|+.|...+..|.+++.++...... +++++||+||||||||++|+++|..++.+|+... .. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 378999999999999999888888877654433 5789999999999999999999999999998322 22 36774
Q ss_pred -HHHHHHHHHHHhh
Q 007208 600 -GLVRMRRMFELYS 612 (613)
Q Consensus 600 -~e~~Ir~IF~~A~ 612 (613)
.+..++++|+.|.
T Consensus 95 d~e~~lr~lf~~a~ 108 (444)
T 1g41_A 95 EVDSIIRDLTDSAM 108 (444)
T ss_dssp CTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 6889999998874
No 64
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.88 E-value=4.4e-10 Score=122.63 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=53.2
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhC--CeEEEeecc
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFE--AKLLLLDVT 138 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~--a~LL~lD~~ 138 (613)
...+|+++... ++.+..|...+- .++.. ....++|||+||+++++++||||||++++ ++++.++..
T Consensus 32 ~~~~~~~iiG~--~~~~~~l~~~~~-~~~~~---------~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~ 99 (456)
T 2c9o_A 32 AKQAASGLVGQ--ENAREACGVIVE-LIKSK---------KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGS 99 (456)
T ss_dssp BCSEETTEESC--HHHHHHHHHHHH-HHHTT---------CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGG
T ss_pred hhhchhhccCH--HHHHHHHHHHHH-HHHhC---------CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHH
Confidence 35678999888 888887766542 12211 12446799999999999999999999999 899998887
Q ss_pred cch
Q 007208 139 DFS 141 (613)
Q Consensus 139 d~~ 141 (613)
++.
T Consensus 100 ~~~ 102 (456)
T 2c9o_A 100 EVY 102 (456)
T ss_dssp GGC
T ss_pred HHH
Confidence 763
No 65
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.87 E-value=4.5e-08 Score=100.91 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=106.8
Q ss_pred cccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccchh
Q 007208 63 ITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSL 142 (613)
Q Consensus 63 vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~ 142 (613)
-+|++|-+. ++.+..|..... . ...+.-+|++||++++++++|+|+|++++.+++.+++.++..
T Consensus 23 ~~~~~ivg~--~~~~~~l~~~l~----~----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~ 86 (324)
T 3u61_B 23 STIDECILP--AFDKETFKSITS----K----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKI 86 (324)
T ss_dssp CSTTTSCCC--HHHHHHHHHHHH----T----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCH
T ss_pred CCHHHHhCc--HHHHHHHHHHHH----c----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCH
Confidence 478888877 888888877665 1 012234677898999999999999999999998888655310
Q ss_pred hhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccccc
Q 007208 143 KIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANI 222 (613)
Q Consensus 143 ~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (613)
+.
T Consensus 87 ------------------------~~------------------------------------------------------ 88 (324)
T 3u61_B 87 ------------------------DF------------------------------------------------------ 88 (324)
T ss_dssp ------------------------HH------------------------------------------------------
T ss_pred ------------------------HH------------------------------------------------------
Confidence 00
Q ss_pred ccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhh-cCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEE
Q 007208 223 SNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVS-KTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLIL 301 (613)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s-~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIi 301 (613)
..+.+.+.+.... ...+.||+|||+|.+-. .+....|...++..+..+.+|
T Consensus 89 --------------------------i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--~~~~~~L~~~le~~~~~~~iI 140 (324)
T 3u61_B 89 --------------------------VRGPLTNFASAASFDGRQKVIVIDEFDRSGL--AESQRHLRSFMEAYSSNCSII 140 (324)
T ss_dssp --------------------------HHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--HHHHHHHHHHHHHHGGGCEEE
T ss_pred --------------------------HHHHHHHHHhhcccCCCCeEEEEECCcccCc--HHHHHHHHHHHHhCCCCcEEE
Confidence 0001111111111 12789999999999641 223445677778777776555
Q ss_pred eeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHH
Q 007208 302 GSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 302 GS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~ 347 (613)
++ ++....+++.+.++|. .+++++|++++|.+|++..+..
T Consensus 141 ~~-----~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 141 IT-----ANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp EE-----ESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred EE-----eCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 53 3445678889999995 7999999999999998876543
No 66
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.83 E-value=9.4e-09 Score=95.40 Aligned_cols=76 Identities=11% Similarity=0.274 Sum_probs=48.8
Q ss_pred CCCEEEEEccchhhhhhh-----hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 263 TSPIVVYLRDVDKLIFKS-----QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s-----~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
..|.||+|||+|.+.... ..+...+..+++. +.+.+|++...........++.++.++|. .|+|++|+.++|
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~ 190 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDT 190 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHH
Confidence 579999999999975432 2345556666654 34444443221101111256788999998 699999999999
Q ss_pred HHHH
Q 007208 338 LVSW 341 (613)
Q Consensus 338 l~Il 341 (613)
.+||
T Consensus 191 ~~il 194 (195)
T 1jbk_A 191 IAIL 194 (195)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8775
No 67
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.79 E-value=3.1e-07 Score=95.01 Aligned_cols=210 Identities=13% Similarity=0.143 Sum_probs=132.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccchhh
Q 007208 64 TFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSLK 143 (613)
Q Consensus 64 sf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~~ 143 (613)
+|++|-+. +..+..|...+....+.. ...+.|||+||+++++++||+++|++++.+++.++...+..
T Consensus 27 ~~~~iiG~--~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~- 93 (338)
T 3pfi_A 27 NFDGYIGQ--ESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK- 93 (338)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS-
T ss_pred CHHHhCCh--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc-
Confidence 78888777 888888877766443221 23456999999999999999999999999988877644310
Q ss_pred hhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCccccccc
Q 007208 144 IQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANIS 223 (613)
Q Consensus 144 ~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (613)
T Consensus 94 -------------------------------------------------------------------------------- 93 (338)
T 3pfi_A 94 -------------------------------------------------------------------------------- 93 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhc--------
Q 007208 224 NLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLL-------- 295 (613)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~-------- 295 (613)
...+..++.. ...+.||||||+|.+-. .....|...++...
T Consensus 94 --------------------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~---~~~~~Ll~~l~~~~~~~~~~~~ 142 (338)
T 3pfi_A 94 --------------------------SGDLAAILTN--LSEGDILFIDEIHRLSP---AIEEVLYPAMEDYRLDIIIGSG 142 (338)
T ss_dssp --------------------------HHHHHHHHHT--CCTTCEEEEETGGGCCH---HHHHHHHHHHHTSCC-------
T ss_pred --------------------------hhHHHHHHHh--ccCCCEEEEechhhcCH---HHHHHHHHHHHhccchhhcccC
Confidence 0000111111 24789999999999532 23333444555321
Q ss_pred ----------CcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 007208 296 ----------ASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVL 365 (613)
Q Consensus 296 ----------g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL 365 (613)
.++++|++ ++....++..+.++|...|++++|+.+++..+++..+..... .....-
T Consensus 143 ~~~~~~~~~~~~~~~i~a-----tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~-------- 208 (338)
T 3pfi_A 143 PAAQTIKIDLPKFTLIGA-----TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKA-------- 208 (338)
T ss_dssp --CCCCCCCCCCCEEEEE-----ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHH--------
T ss_pred ccccceecCCCCeEEEEe-----CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHH--------
Confidence 02556664 334456888999999999999999999999999877643110 000000
Q ss_pred hcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 366 SANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 366 ~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
...|...+.+ ..+++..++..|..++..... -.|+.+++..++..+
T Consensus 209 ------~~~l~~~~~G----~~r~l~~~l~~~~~~a~~~~~--------~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 209 ------ALEIAKRSRS----TPRIALRLLKRVRDFADVNDE--------EIITEKRANEALNSL 254 (338)
T ss_dssp ------HHHHHHTTTT----CHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHHHHH
T ss_pred ------HHHHHHHHCc----CHHHHHHHHHHHHHHHHhhcC--------CccCHHHHHHHHHHh
Confidence 1122222333 345677777777655543221 247888888888643
No 68
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.73 E-value=1.4e-08 Score=110.83 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHH
Q 007208 41 AVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQML 120 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~L 120 (613)
..|+.++.++|.+.|+-- ++.|..|..+++-|.+++.+....+ .....++|||.||+++++++|
T Consensus 3 ~~tP~~i~~~Ld~~IvGq---------------e~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQ---------------ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCHHHHHHHHHTTCCSC---------------HHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTTSSHHHH
T ss_pred CCCHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCCCCHHHH
Confidence 468888888887776643 8899999999998887766533221 122457899999999999999
Q ss_pred HHHHHhhhCCeEEEeecccchh-hhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccc
Q 007208 121 AKALAHFFEAKLLLLDVTDFSL-KIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDIT 199 (613)
Q Consensus 121 aKALA~~f~a~LL~lD~~d~~~-~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (613)
|||||+++++.++.+|.+++.. +| +|.
T Consensus 67 ar~lA~~l~~~~~~v~~~~~~~~g~---vG~------------------------------------------------- 94 (444)
T 1g41_A 67 ARRLAKLANAPFIKVEATKFTEVGY---VGK------------------------------------------------- 94 (444)
T ss_dssp HHHHHHHTTCCEEEEEGGGGC-------CCC-------------------------------------------------
T ss_pred HHHHHHHcCCCceeecchhhcccce---eec-------------------------------------------------
Confidence 9999999999999999988752 11 111
Q ss_pred cCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhh
Q 007208 200 SRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFK 279 (613)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~ 279 (613)
+....++.+|+..... +++|++|.+...
T Consensus 95 ---------------------------------------------d~e~~lr~lf~~a~~~-------~~~De~d~~~~~ 122 (444)
T 1g41_A 95 ---------------------------------------------EVDSIIRDLTDSAMKL-------VRQQEIAKNRAR 122 (444)
T ss_dssp ---------------------------------------------CTHHHHHHHHHHHHHH-------HHHHHHHSCC--
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHhc-------chhhhhhhhhcc
Confidence 1112334444433332 125555553322
Q ss_pred h-----hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhc--cCCceEEeCCCChH-HHHHHHH
Q 007208 280 S-----QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTA--LFPYNIEIRPPEDE-NHLVSWK 342 (613)
Q Consensus 280 s-----~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~--lF~~~IeI~~P~ee-~Rl~Ilk 342 (613)
. .+.+..|...++.+.+..-++++ .+|.++.+++++.+ +|+.+|+|++|+.. .|.+|+.
T Consensus 123 ~~~~~e~rvl~~LL~~~dg~~~~~~v~a~----~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 123 AEDVAEERILDALLPPAKNQWGEVENHDS----HSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp -----------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHhhccccccccccc----cccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 2 45667777777776544322322 26778999999987 99999999999998 8888874
No 69
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.72 E-value=1.5e-07 Score=121.05 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=58.3
Q ss_pred CCEEEEEccchhhhh---hhhHHHHHHHHHHHhh--c----------CcEEEEeeeeccCCCCccccchHhhccCCceEE
Q 007208 264 SPIVVYLRDVDKLIF---KSQRTYNLFQKMMKKL--L----------ASVLILGSRIVDLSNDQREVDGRVTALFPYNIE 328 (613)
Q Consensus 264 ~P~IL~idDiD~~l~---~s~r~~~~l~~~l~~l--~----------g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~Ie 328 (613)
.++||||||++---. +++.....+..+++.- . .++.++|+......-.-..+++++.++| +.|.
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~ 1414 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILY 1414 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEE
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEE
Confidence 578999999876221 2345777788888741 1 1366666532211112257999999999 8899
Q ss_pred eCCCChHHHHHHHHHHHHH
Q 007208 329 IRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 329 I~~P~ee~Rl~Ilk~~L~~ 347 (613)
|+.|+++++..|++.++..
T Consensus 1415 i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 70
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.72 E-value=6.6e-09 Score=105.99 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=66.4
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCC---CCceeeecCCCCCchhhhhhhHHhhC-------Cceeec---
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKP---CRGILLFGPPGLGKQCWPRPLPKRLG-------QASLMS--- 591 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~---~~giLL~GPPGtGKT~lAkAiA~e~g-------~~fi~~--- 591 (613)
+.+|+|++++++.|.+.+..+. .+..+...|+.+ ..++||+||||||||++|+++|+.++ .+|+..
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3489999999999999998744 466665555443 44699999999999999999999983 366622
Q ss_pred -cCCCcchHHHHHHHHHHHHhh
Q 007208 592 -PCLPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 592 -v~~~~lge~e~~Ir~IF~~A~ 612 (613)
..+.+.|.....++.+|+.+.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~ 130 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM 130 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT
T ss_pred HhhhhcccccHHHHHHHHHhcC
Confidence 233466777888999998763
No 71
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.70 E-value=4.2e-07 Score=94.02 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=86.3
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHHHh-----------hcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCCh
Q 007208 266 IVVYLRDVDKLIFKSQRTYNLFQKMMKK-----------LLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPED 334 (613)
Q Consensus 266 ~IL~idDiD~~l~~s~r~~~~l~~~l~~-----------l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~e 334 (613)
.||||||+|.+ . .+....|...++. .+.+++|+++...........+++++.++|...++|++|+.
T Consensus 111 ~vl~iDEi~~~-~--~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~ 187 (331)
T 2r44_A 111 NFILADEVNRS-P--AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDK 187 (331)
T ss_dssp SEEEEETGGGS-C--HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCH
T ss_pred cEEEEEccccC-C--HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCH
Confidence 69999999994 2 2334445555554 24456666653321111223488999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----HhhhhhhhhHHHHHhhcCCCCchh--hh---hhc-----cc-----------Ccccchhh
Q 007208 335 ENHLVSWKSQLEEDMK----MMQAKDNRNHIMEVLSANDLDCDD--LD---SIN-----VA-----------DTMVLGNY 389 (613)
Q Consensus 335 e~Rl~Ilk~~L~~d~k----~~~~~~N~~~I~~vL~~~dl~c~d--La---~l~-----~~-----------d~~~~~~~ 389 (613)
++|.+||+..+..+.. .......+..++... .++.+++ +. .++ .. ...++.+.
T Consensus 188 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~ 265 (331)
T 2r44_A 188 ESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI--NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRA 265 (331)
T ss_dssp HHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH--HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHH
T ss_pred HHHHHHHHhccccCcchhccccCCHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhH
Confidence 9999999987643100 000011111111111 1111111 11 111 11 12357788
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 390 IEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 390 ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
+..++..|..++..+.. -.++.+++..++..+
T Consensus 266 ~~~ll~~a~a~A~l~g~--------~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 266 AINLNRVAKAMAFFNNR--------DYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHHHHHTTC--------SBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHH
Confidence 88888888877765433 237788998888643
No 72
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.70 E-value=4.4e-07 Score=95.82 Aligned_cols=86 Identities=20% Similarity=0.343 Sum_probs=63.7
Q ss_pred CCChHHHHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccc---------------cccCCCCCCC
Q 007208 41 AVTPEKMEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSK---------------YTRNLSPASQ 105 (613)
Q Consensus 41 ~~~~~~~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k---------------~~~~L~~~~~ 105 (613)
-.++.++++.|...|+ +. +..|..|..+++.|++...... --........
T Consensus 9 ~~~~~~l~~~L~~~vi-------------Gq--~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~ 73 (376)
T 1um8_A 9 IPAPKELKAVLDNYVI-------------GQ--EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKS 73 (376)
T ss_dssp CCCHHHHHHHHHTTCC-------------SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHhhHcc-------------Cc--HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCC
Confidence 3456777777766554 33 7899999999887776643210 0012344567
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
.|||+||+++++++|||+||++++.+++.+|...+.
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 109 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLT 109 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhh
Confidence 899999999999999999999999999999887663
No 73
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.67 E-value=1.6e-07 Score=94.67 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 102 PASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 102 ~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
...+.|||+||+++++++||+|+|++.+.+++.++..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~ 99 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH
Confidence 44567999999999999999999999999998887643
No 74
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.67 E-value=6.7e-08 Score=107.94 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=83.9
Q ss_pred HHHhhhcCCCEEEEEccchhhhhhhh-HHHHHHHHHHHhhc---------------CcEEEEeeeeccCCCCccccchHh
Q 007208 256 VLCYVSKTSPIVVYLRDVDKLIFKSQ-RTYNLFQKMMKKLL---------------ASVLILGSRIVDLSNDQREVDGRV 319 (613)
Q Consensus 256 vl~s~s~~~P~IL~idDiD~~l~~s~-r~~~~l~~~l~~l~---------------g~VlIiGS~~~ds~~~~~~v~~~l 319 (613)
.+..+....| ||||||+|++....+ +....|..+|+... ..|+||++ +|....+++.+
T Consensus 168 ~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t-----tN~~~~l~~aL 241 (543)
T 3m6a_A 168 GMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT-----ANNLATIPGPL 241 (543)
T ss_dssp HHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE-----CSSTTTSCHHH
T ss_pred HHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec-----cCccccCCHHH
Confidence 3444545567 999999999654322 13334444444211 44666665 55667889999
Q ss_pred hccCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhccc-----CcccchhhHHHHH
Q 007208 320 TALFPYNIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVA-----DTMVLGNYIEEIV 394 (613)
Q Consensus 320 ~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~-----d~~~~~~~ie~iV 394 (613)
.+||. .|++++|++++|.+||+.+|-..... +.++.. ....++-+.+..+... ...-+.+.|+.++
T Consensus 242 ~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~---~~~~~~-----~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~ 312 (543)
T 3m6a_A 242 RDRME-IINIAGYTEIEKLEIVKDHLLPKQIK---EHGLKK-----SNLQLRDQAILDIIRYYTREAGVRSLERQLAAIC 312 (543)
T ss_dssp HHHEE-EEECCCCCHHHHHHHHHHTHHHHHHH---HTTCCG-----GGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred Hhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHH---HcCCCc-----ccccCCHHHHHHHHHhCChhhchhHHHHHHHHHH
Confidence 99995 79999999999999999887332110 000000 0001122223333222 1112225556666
Q ss_pred HHHHHhhhhcCCCcccCCCceeechhhHHhhhh
Q 007208 395 VSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLS 427 (613)
Q Consensus 395 ~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~ 427 (613)
..|....+.. ..+...|+.+++..++.
T Consensus 313 ~~aa~~~~~~------~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 313 RKAAKAIVAE------ERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHHTT------CCSCCEECTTTTHHHHC
T ss_pred HHHHHHHHhc------CCcceecCHHHHHHHhC
Confidence 5555444432 23457899999999985
No 75
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.67 E-value=4.7e-07 Score=98.43 Aligned_cols=134 Identities=14% Similarity=0.162 Sum_probs=82.4
Q ss_pred CCCEEEEEccchhhhhh--h-hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHH
Q 007208 263 TSPIVVYLRDVDKLIFK--S-QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENH 337 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~--s-~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~R 337 (613)
..|.||||||++.+... . +.++..|..+.+ .+..+|++++.. ......+++++..+|. ..++|++|+.++|
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~~--~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r 268 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDRE--PQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESSC--GGGCSSCCHHHHHHHHSSBCCBCCCCCHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECCC--HHHHHHHHHHHHhhccCCeEEEeCCCCHHHH
Confidence 37899999999996542 2 335554444432 245567765321 1112237788888886 7899999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceee
Q 007208 338 LVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLII 417 (613)
Q Consensus 338 l~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~i 417 (613)
.+||+..+....... ..+. ...|+..+.+ ..++++.++..+..++.... + .|
T Consensus 269 ~~iL~~~~~~~~~~i-~~e~--------------l~~la~~~~g----n~R~l~~~L~~~~~~a~~~~--------~-~I 320 (440)
T 2z4s_A 269 KSIARKMLEIEHGEL-PEEV--------------LNFVAENVDD----NLRRLRGAIIKLLVYKETTG--------K-EV 320 (440)
T ss_dssp HHHHHHHHHHHTCCC-CTTH--------------HHHHHHHCCS----CHHHHHHHHHHHHHHHHHSS--------S-CC
T ss_pred HHHHHHHHHHcCCCC-CHHH--------------HHHHHHhcCC----CHHHHHHHHHHHHHHHHHhC--------C-CC
Confidence 999998764311000 0000 1223333333 45678888888877765322 1 27
Q ss_pred chhhHHhhhhh
Q 007208 418 SSKSLSHGLSI 428 (613)
Q Consensus 418 s~~sl~~al~~ 428 (613)
+.+.+..++..
T Consensus 321 t~~~~~~~l~~ 331 (440)
T 2z4s_A 321 DLKEAILLLKD 331 (440)
T ss_dssp CHHHHHHHTST
T ss_pred CHHHHHHHHHH
Confidence 88888888863
No 76
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.66 E-value=1.2e-06 Score=90.96 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhh--hhHHHHHHHHHHHhh--cCcEEEEeeeeccCCCCccccchHhhccCC
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFK--SQRTYNLFQKMMKKL--LASVLILGSRIVDLSNDQREVDGRVTALFP 324 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~--s~r~~~~l~~~l~~l--~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~ 324 (613)
.++.+++.+.. ...|.||+|||+|.+... .++.+..+...++.. ..++.+|++.... +-...++..+.++|.
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~--~~~~~l~~~l~~r~~ 192 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL--GFVENLEPRVKSSLG 192 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS--TTSSSSCHHHHTTTT
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC--chHhhhCHHHHhcCC
Confidence 34555554432 346999999999997654 334332222222222 4556555542211 112457788888887
Q ss_pred c-eEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCc---hhhhhhcccCcccchhhHHHHHHHHHHh
Q 007208 325 Y-NIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDC---DDLDSINVADTMVLGNYIEEIVVSAVSY 400 (613)
Q Consensus 325 ~-~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c---~dLa~l~~~d~~~~~~~ie~iV~~A~s~ 400 (613)
. .|++++|+.+++.++++..+..... ...++- ..+...+..+. -..+++..++..|...
T Consensus 193 ~~~i~l~~l~~~~~~~il~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~-G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 193 EVELVFPPYTAPQLRDILETRAEEAFN----------------PGVLDPDVVPLCAALAAREH-GDARRALDLLRVAGEI 255 (387)
T ss_dssp SEECCBCCCCHHHHHHHHHHHHHHHBC----------------TTTBCSSHHHHHHHHHHSSS-CCHHHHHHHHHHHHHH
T ss_pred CeEEeeCCCCHHHHHHHHHHHHHhhcc----------------CCCCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHH
Confidence 6 9999999999999999987743110 001111 12333333100 1234566677777655
Q ss_pred hhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 401 HLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 401 ~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
+.... .-.|+.+++..++..+
T Consensus 256 a~~~~--------~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 256 AERRR--------EERVRREHVYSARAEI 276 (387)
T ss_dssp HHHTT--------CSCBCHHHHHHHHHHH
T ss_pred HHHcC--------CCCcCHHHHHHHHHHH
Confidence 54321 2247888999888644
No 77
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.66 E-value=4.9e-09 Score=129.51 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=65.6
Q ss_pred CCCccccccccccHHHHHHHHHHHHCcCCC----------hhhhhc------CCCC----------CCCc--eeeecCCC
Q 007208 519 NEISVTFADIGALEEIKESLQELVMLPLRR----------PDLFKG------GLLK----------PCRG--ILLFGPPG 570 (613)
Q Consensus 519 ~~~~v~~ddIgGl~~vk~~l~e~v~~pl~~----------pe~~~~------~~i~----------~~~g--iLL~GPPG 570 (613)
..+.++|+||||++++|+.+.+.+.+|+.+ |+.|+. .|+. +|+| +|+|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 345699999999999999999999999954 777866 3443 5566 99999999
Q ss_pred CCchhhhhhhHHhhCCc-----eeeccC--------------CCcchH----HHHHHHHHHHHhh
Q 007208 571 LGKQCWPRPLPKRLGQA-----SLMSPC--------------LPSLPN----GLVRMRRMFELYS 612 (613)
Q Consensus 571 tGKT~lAkAiA~e~g~~-----fi~~v~--------------~~~lge----~e~~Ir~IF~~A~ 612 (613)
||||++|+++|.+...+ ||..-- ..++++ +|+.|+.+|.+|+
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar 1157 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1157 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH
Confidence 99999999999988666 763221 123456 8999999998764
No 78
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.66 E-value=1.5e-06 Score=89.82 Aligned_cols=151 Identities=12% Similarity=0.095 Sum_probs=85.1
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhh-------------cCcEEEEeeeeccCCCCccccchHhhccCCceEEeC
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKL-------------LASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIR 330 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l-------------~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~ 330 (613)
.+.||||||+|.+-. +....|...++.- +..++++++... ....+++++.++|...++|+
T Consensus 144 ~~~vl~iDEi~~l~~---~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~----~~~~l~~~L~~R~~~~~~l~ 216 (350)
T 1g8p_A 144 NRGYLYIDECNLLED---HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP----EEGDLRPQLLDRFGLSVEVL 216 (350)
T ss_dssp TTEEEEETTGGGSCH---HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS----CSCCCCHHHHTTCSEEEECC
T ss_pred CCCEEEEeChhhCCH---HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC----CCCCCCHHHHhhcceEEEcC
Confidence 588999999999533 2233444455531 236777775322 12368899999999999999
Q ss_pred CC-ChHHHHHHHHHHHHHHHH-----------HhhhhhhhhHHHHHhhcCCCCchh---hhhhcccCcccchhhHHHHHH
Q 007208 331 PP-EDENHLVSWKSQLEEDMK-----------MMQAKDNRNHIMEVLSANDLDCDD---LDSINVADTMVLGNYIEEIVV 395 (613)
Q Consensus 331 ~P-~ee~Rl~Ilk~~L~~d~k-----------~~~~~~N~~~I~~vL~~~dl~c~d---La~l~~~d~~~~~~~ie~iV~ 395 (613)
+| +.+.|.+|++..+..... .......+...+.......++-+- |..++...-.-..+.+..++.
T Consensus 217 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~ 296 (350)
T 1g8p_A 217 SPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLR 296 (350)
T ss_dssp CCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 99 677888999875432110 000001111111111111222222 223333311114578888888
Q ss_pred HHHHhhhhcCCCcccCCCceeechhhHHhhhhhh
Q 007208 396 SAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIF 429 (613)
Q Consensus 396 ~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~ 429 (613)
.|..++..+.. -.|+.+++..++..+
T Consensus 297 ~a~~~A~~~~~--------~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 297 SARALAALEGA--------TAVGRDHLKRVATMA 322 (350)
T ss_dssp HHHHHHHHTTC--------SBCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--------CcCCHHHHHHHHHHH
Confidence 88877755332 238889999998754
No 79
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.61 E-value=8.4e-07 Score=85.89 Aligned_cols=130 Identities=10% Similarity=0.029 Sum_probs=75.6
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhc--CcE-EEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLL--ASV-LILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~--g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl 338 (613)
.|.||+|||+|.+... ......|...++.+. +.+ +|++++... .........+.++|. ..+++++|+.+++.
T Consensus 104 ~~~vliiDe~~~~~~~-~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~--~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 104 QFDLICIDDVDAVAGH-PLWEEAIFDLYNRVAEQKRGSLIVSASASP--MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKL 180 (242)
T ss_dssp GSSEEEEETGGGGTTC-HHHHHHHHHHHHHHHHHCSCEEEEEESSCT--TTTTCCCHHHHHHHHHSEEEECCCCCGGGHH
T ss_pred CCCEEEEeccccccCC-HHHHHHHHHHHHHHHHcCCCeEEEEcCCCH--HHHHHhhhhhhhHhhcCceEEeCCCCHHHHH
Confidence 6889999999995433 222233344444332 333 555553221 111234567777776 89999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCch---hhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCce
Q 007208 339 VSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCD---DLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKL 415 (613)
Q Consensus 339 ~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~---dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l 415 (613)
++++..+..... .++-+ .|...+.+ ..+++..++..|..++.....
T Consensus 181 ~~l~~~~~~~~~------------------~~~~~~~~~l~~~~~g----~~r~l~~~l~~~~~~a~~~~~--------- 229 (242)
T 3bos_A 181 AALQRRAAMRGL------------------QLPEDVGRFLLNRMAR----DLRTLFDVLDRLDKASMVHQR--------- 229 (242)
T ss_dssp HHHHHHHHHTTC------------------CCCHHHHHHHHHHTTT----CHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHcCC------------------CCCHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHhCC---------
Confidence 999987643110 11111 23333333 335666667777666643221
Q ss_pred eechhhHHhhhh
Q 007208 416 IISSKSLSHGLS 427 (613)
Q Consensus 416 ~is~~sl~~al~ 427 (613)
.|+.+++..++.
T Consensus 230 ~It~~~v~~~l~ 241 (242)
T 3bos_A 230 KLTIPFVKEMLR 241 (242)
T ss_dssp CCCHHHHHHHHT
T ss_pred CCcHHHHHHHhh
Confidence 278888887764
No 80
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.57 E-value=7.6e-07 Score=91.11 Aligned_cols=75 Identities=7% Similarity=0.134 Sum_probs=51.6
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhc------------------CcEEEEeeeeccCCCCccccchHhhccCC
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLL------------------ASVLILGSRIVDLSNDQREVDGRVTALFP 324 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~------------------g~VlIiGS~~~ds~~~~~~v~~~l~~lF~ 324 (613)
..+.+|||||+|.+-...+ ..|...++... .+++++++. +....+++.+..+|.
T Consensus 89 ~~~~~l~lDEi~~l~~~~~---~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t-----~~~~~~~~~l~~R~~ 160 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAE---EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT-----TRPGLITAPLLSRFG 160 (324)
T ss_dssp CTTCEEEETTTTSCCHHHH---HHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE-----SCCSSCSCSTTTTCS
T ss_pred cCCCEEEEECCcccccchH---HHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC-----CCcccCCHHHHhccc
Confidence 4688999999999543322 33444555431 235555542 233456677888998
Q ss_pred ceEEeCCCChHHHHHHHHHHH
Q 007208 325 YNIEIRPPEDENHLVSWKSQL 345 (613)
Q Consensus 325 ~~IeI~~P~ee~Rl~Ilk~~L 345 (613)
..+++++|+.+++..+++..+
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~ 181 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDA 181 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHH
Confidence 899999999999988888765
No 81
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.57 E-value=2.3e-06 Score=81.02 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=55.1
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..|.||+|||+|.+-. .....|...++..+.++.++.+ ++....++..+.++|. .+++++|+.+++.++++
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~l~~~l~~~~~~~~~i~~-----~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~ 171 (226)
T 2chg_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILS-----CNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLL 171 (226)
T ss_dssp CSCEEEEEETGGGSCH---HHHHHHHHHHHHTTTTEEEEEE-----ESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHH
T ss_pred cCceEEEEeChhhcCH---HHHHHHHHHHHhcCCCCeEEEE-----eCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHH
Confidence 5799999999999633 2344566677776666644443 1233567788888887 99999999999999988
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 172 ~~~~ 175 (226)
T 2chg_A 172 EICE 175 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 82
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.55 E-value=5.8e-08 Score=97.80 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=44.7
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCC-c----chHHHHHHHHHHHHhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLP-S----LPNGLVRMRRMFELYS 612 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~-~----lge~e~~Ir~IF~~A~ 612 (613)
+..++.++||+||||||||++|+++|.+++.+|+....+. . .+.....++++|+.++
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999999999998433322 2 2344568999998875
No 83
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=1.1e-06 Score=97.29 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=115.5
Q ss_pred cccccccccccHHHHHHHHHHHHhhcCC--CcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 63 ITFDEFPYYLSGQTRALLTSAAYVHLKH--TEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 63 vsf~~fpYyLse~tk~~L~~~a~~hL~~--~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
.+|+++-+. +..+..|.......... ..+.+.+.+-.+..+.+||+||+++++++||+++|+++|..++.++..++
T Consensus 36 ~~~~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 36 TNLQQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp SSGGGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCHHHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 368888776 78888777765432111 12223333333456889999999999999999999999999999998776
Q ss_pred hhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccccccccccCCCCcccccCCccCCCCCccccccCcccc
Q 007208 141 SLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEETQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASA 220 (613)
Q Consensus 141 ~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (613)
.... .++. .+... . ....+
T Consensus 114 ~~~~--------------------~~~~---~i~~~--~--------------~~~~~---------------------- 132 (516)
T 1sxj_A 114 RSKT--------------------LLNA---GVKNA--L--------------DNMSV---------------------- 132 (516)
T ss_dssp CCHH--------------------HHHH---TGGGG--T--------------TBCCS----------------------
T ss_pred chHH--------------------HHHH---HHHHH--h--------------ccccH----------------------
Confidence 4111 0000 00000 0 00000
Q ss_pred ccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEE
Q 007208 221 NISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLI 300 (613)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlI 300 (613)
..+... ..+ .......|.||||||+|.+....+.....|...++....+|++
T Consensus 133 -------------------~~~~~~-------~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIl 184 (516)
T 1sxj_A 133 -------------------VGYFKH-------NEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLIL 184 (516)
T ss_dssp -------------------TTTTTC-------------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEE
T ss_pred -------------------HHHHhh-------hhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEE
Confidence 000000 000 0123358999999999997665566677778888877677877
Q ss_pred EeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHHHHH
Q 007208 301 LGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 301 iGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~ 347 (613)
+++... ...+. .+ +.+...|++++|+.+++.++++..+..
T Consensus 185 i~~~~~-----~~~l~-~l-~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 185 ICNERN-----LPKMR-PF-DRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp EESCTT-----SSTTG-GG-TTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEcCCC-----Cccch-hh-HhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 775322 12222 23 345669999999999999999876543
No 84
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.50 E-value=4.8e-06 Score=85.86 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=51.5
Q ss_pred CCEEEEEccchhhhhh--h-hHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCC--ceEEeCCCChHHHH
Q 007208 264 SPIVVYLRDVDKLIFK--S-QRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFP--YNIEIRPPEDENHL 338 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~--s-~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~--~~IeI~~P~ee~Rl 338 (613)
.|.||||||++.+... . +.++..+....+ .+..+|++++.. ......+++++.++|. ..++|++ +.++|.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~--~~~~iii~~~~~--~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~ 172 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL--LEKQIILASDRH--PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRF 172 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH--TTCEEEEEESSC--GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEecCC--hHHHHHhhhHhhhcccCceEEEeCC-CHHHHH
Confidence 4889999999995431 2 234444443332 234566665211 1112357889998886 6799999 999999
Q ss_pred HHHHHHHH
Q 007208 339 VSWKSQLE 346 (613)
Q Consensus 339 ~Ilk~~L~ 346 (613)
++|+..+.
T Consensus 173 ~il~~~~~ 180 (324)
T 1l8q_A 173 KIIKEKLK 180 (324)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 85
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.49 E-value=2.4e-06 Score=86.81 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhc-----------CcEEEEe-eeec-----------cCCCC---------
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLL-----------ASVLILG-SRIV-----------DLSND--------- 311 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~-----------g~VlIiG-S~~~-----------ds~~~--------- 311 (613)
...||||||+|++ . .+....|..+++.-. ..++||+ ++.. ....+
T Consensus 119 ~~~vl~lDEi~~l-~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~ 195 (311)
T 4fcw_A 119 PYSVILFDAIEKA-H--PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVL 195 (311)
T ss_dssp SSEEEEEETGGGS-C--HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHH
T ss_pred CCeEEEEeChhhc-C--HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHH
Confidence 5689999999995 2 345555666676532 1344444 4331 00001
Q ss_pred ccccchHhhccCCceEEeCCCChHHHHHHHHHHHHHH
Q 007208 312 QREVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEED 348 (613)
Q Consensus 312 ~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~d 348 (613)
...+++.+..+|+..+.+.||+.+++.+|++.+|.+-
T Consensus 196 ~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 196 QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp HHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred HHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2345677888999999999999999999999888653
No 86
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.48 E-value=6e-07 Score=83.22 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=43.3
Q ss_pred CCCEEEEEccchhhhhh------hhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCC
Q 007208 263 TSPIVVYLRDVDKLIFK------SQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPE 333 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~------s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ 333 (613)
..|.||+|||+|.+... ...+...|..+++. +.+++|++...........++.++.++|.. |+|++|+
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 47999999999997522 13455566666654 455555542221100012468899999995 9999996
No 87
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.46 E-value=9.5e-06 Score=84.66 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-hHH-HHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCce
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-QRT-YNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYN 326 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-~r~-~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~ 326 (613)
.++.+++.+. ...+ ||+|||+|.+.... ++. +..| +... .++.||++.... .-...++..+.++|...
T Consensus 122 ~~~~l~~~l~---~~~~-vlilDEi~~l~~~~~~~~~l~~l---~~~~-~~~~iI~~t~~~--~~~~~l~~~l~sr~~~~ 191 (384)
T 2qby_B 122 YIDKIKNGTR---NIRA-IIYLDEVDTLVKRRGGDIVLYQL---LRSD-ANISVIMISNDI--NVRDYMEPRVLSSLGPS 191 (384)
T ss_dssp HHHHHHHHHS---SSCE-EEEEETTHHHHHSTTSHHHHHHH---HTSS-SCEEEEEECSST--TTTTTSCHHHHHTCCCE
T ss_pred HHHHHHHHhc---cCCC-EEEEECHHHhccCCCCceeHHHH---hcCC-cceEEEEEECCC--chHhhhCHHHHhcCCCe
Confidence 3444444332 2344 99999999975442 333 3222 2222 566555542111 11145788888888779
Q ss_pred EEeCCCChHHHHHHHHHHHH
Q 007208 327 IEIRPPEDENHLVSWKSQLE 346 (613)
Q Consensus 327 IeI~~P~ee~Rl~Ilk~~L~ 346 (613)
|++++|+.++..++++..+.
T Consensus 192 i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 192 VIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp EEECCCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 88
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.44 E-value=1e-07 Score=100.33 Aligned_cols=85 Identities=20% Similarity=0.197 Sum_probs=60.0
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhh--cCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC----C-cchH
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFK--GGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL----P-SLPN 599 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~--~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~----~-~lge 599 (613)
.|.|++++++.+...+.....+..... .....++.++||+||||||||++|++||..++.||+...++ . +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 368999999999988854332222111 11113567899999999999999999999999999943222 2 5565
Q ss_pred H-HHHHHHHHHHh
Q 007208 600 G-LVRMRRMFELY 611 (613)
Q Consensus 600 ~-e~~Ir~IF~~A 611 (613)
. ...++++|+.+
T Consensus 96 ~~~~~~~~~~~~~ 108 (363)
T 3hws_A 96 DVENIIQKLLQKC 108 (363)
T ss_dssp HHTHHHHHHHHHT
T ss_pred cHHHHHHHHHHHh
Confidence 5 56778888765
No 89
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.44 E-value=1.2e-05 Score=76.68 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=53.7
Q ss_pred cCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 262 KTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 262 ~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
...|.||+|||+|.+- ......|...++..+.++.+|.+. +....++..+.+++ ..|++++|++++..+++
T Consensus 124 ~~~~~vlviDe~~~l~---~~~~~~l~~~l~~~~~~~~~i~~t-----~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l 194 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLS---RHSFNALLKTLEEPPEHVKFLLAT-----TDPQKLPVTILSRC-LQFHLKALDVEQIRHQL 194 (250)
T ss_dssp SSSSEEEEEETGGGSC---HHHHHHHHHHHHSCCTTEEEEEEE-----SCGGGSCHHHHTTS-EEEECCCCCHHHHHHHH
T ss_pred cCCceEEEEECccccc---HHHHHHHHHHHhcCCCceEEEEEe-----CChHhCCHHHHHHh-hhccCCCCCHHHHHHHH
Confidence 3578999999999952 234445666677666666444431 22345666777775 78999999999999999
Q ss_pred HHHHHH
Q 007208 342 KSQLEE 347 (613)
Q Consensus 342 k~~L~~ 347 (613)
+..+..
T Consensus 195 ~~~~~~ 200 (250)
T 1njg_A 195 EHILNE 200 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877643
No 90
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.41 E-value=3.3e-07 Score=95.65 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=57.6
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC--ceeec----cCC
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ--ASLMS----PCL 594 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~--~fi~~----v~~ 594 (613)
|..+|+++.|.+++++.+..++.. .. .+..+++++||+||||||||++|+++|.+++. ||+.. +..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------IR-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HH-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------HH-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 456699999999999887665533 22 23345689999999999999999999999985 66522 233
Q ss_pred CcchHHHHHHHHHHHH
Q 007208 595 PSLPNGLVRMRRMFEL 610 (613)
Q Consensus 595 ~~lge~e~~Ir~IF~~ 610 (613)
.+++..+ .+.+.|.+
T Consensus 111 ~~~~~~~-~~~~~~~~ 125 (368)
T 3uk6_A 111 LEMSKTE-ALTQAFRR 125 (368)
T ss_dssp SSSCHHH-HHHHHHHH
T ss_pred cccchhH-HHHHHHHH
Confidence 4455444 45666654
No 91
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.2e-06 Score=88.41 Aligned_cols=82 Identities=7% Similarity=0.076 Sum_probs=56.1
Q ss_pred hcCCCEEEEEccchhhhhhhhH-HHHHHHHHHHhhcCcEEEEee-eeccCCCCccccchHhhccCC-ceEEeCCCChHHH
Q 007208 261 SKTSPIVVYLRDVDKLIFKSQR-TYNLFQKMMKKLLASVLILGS-RIVDLSNDQREVDGRVTALFP-YNIEIRPPEDENH 337 (613)
Q Consensus 261 s~~~P~IL~idDiD~~l~~s~r-~~~~l~~~l~~l~g~VlIiGS-~~~ds~~~~~~v~~~l~~lF~-~~IeI~~P~ee~R 337 (613)
.+..|+||+|||+|.+. .++ +|.++. ....-.+.++|||. ++.+ .....++.++.++|. ..|+++|.+.++-
T Consensus 129 ~~~~~~ii~lDE~d~l~--~q~~L~~l~~-~~~~~~s~~~vI~i~n~~d--~~~~~L~~~v~SR~~~~~i~F~pYt~~el 203 (318)
T 3te6_A 129 AKKRKTLILIQNPENLL--SEKILQYFEK-WISSKNSKLSIICVGGHNV--TIREQINIMPSLKAHFTEIKLNKVDKNEL 203 (318)
T ss_dssp GGSCEEEEEEECCSSSC--CTHHHHHHHH-HHHCSSCCEEEEEECCSSC--CCHHHHHTCHHHHTTEEEEECCCCCHHHH
T ss_pred ccCCceEEEEecHHHhh--cchHHHHHHh-cccccCCcEEEEEEecCcc--cchhhcchhhhccCCceEEEeCCCCHHHH
Confidence 45789999999999976 445 444443 32222345766663 2222 122346677777886 6899999999999
Q ss_pred HHHHHHHHHH
Q 007208 338 LVSWKSQLEE 347 (613)
Q Consensus 338 l~Ilk~~L~~ 347 (613)
.+|++..|+.
T Consensus 204 ~~Il~~Rl~~ 213 (318)
T 3te6_A 204 QQMIITRLKS 213 (318)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988864
No 92
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.35 E-value=1.1e-07 Score=96.41 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=58.0
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcC-CCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC-----CcchHH
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGG-LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL-----PSLPNG 600 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~-~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~-----~~lge~ 600 (613)
+|.|.+++++.+...+..++.++.+.... .-.++.++||+||||||||++|+++|..++.+|+...++ .++|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 57899999999998886643333222110 013457899999999999999999999999999843222 233322
Q ss_pred -HHHHHHHHHH
Q 007208 601 -LVRMRRMFEL 610 (613)
Q Consensus 601 -e~~Ir~IF~~ 610 (613)
...++++|+.
T Consensus 96 ~~~~~~~~~~~ 106 (310)
T 1ofh_A 96 VDSIIRDLTDS 106 (310)
T ss_dssp TTHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 3467777764
No 93
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.34 E-value=3.8e-05 Score=79.44 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhh-hHHHHHHHHHHHhhc-CcEEEEee-eeccCCCCccccchHhhccCC-
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKS-QRTYNLFQKMMKKLL-ASVLILGS-RIVDLSNDQREVDGRVTALFP- 324 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s-~r~~~~l~~~l~~l~-g~VlIiGS-~~~ds~~~~~~v~~~l~~lF~- 324 (613)
.++.+++.+.. ...|.||+|||++.+.... .+....+...++.+. .++.+|++ +..+ -...++..+.++|.
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~---~~~~~~~~~~~r~~~ 189 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK---FVDLLDPRVKSSLSE 189 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG---GGGGCTTHHHHTTTT
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC---hHhhhCHHHhccCCC
Confidence 34555555443 2349999999999976553 556555666665543 45544443 2111 11345556656554
Q ss_pred ceEEeCCCChHHHHHHHHHHHH
Q 007208 325 YNIEIRPPEDENHLVSWKSQLE 346 (613)
Q Consensus 325 ~~IeI~~P~ee~Rl~Ilk~~L~ 346 (613)
..|++++++.++..++++..++
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHH
Confidence 5999999999999999988764
No 94
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.34 E-value=7.9e-07 Score=82.26 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=56.3
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh----------CCceeecc
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL----------GQASLMSP 592 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~----------g~~fi~~v 592 (613)
.+|+++.|.++..+.+.+.+.. ..+.+++|+||||||||++|+++|.++ +.+++...
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4588899999988888776543 235679999999999999999999996 66666221
Q ss_pred C------CCcchHHHHHHHHHHHHh
Q 007208 593 C------LPSLPNGLVRMRRMFELY 611 (613)
Q Consensus 593 ~------~~~lge~e~~Ir~IF~~A 611 (613)
. ..+.+.....++++|+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDL 110 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCccccHHHHHHHHHHHH
Confidence 1 234566667888888754
No 95
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=4e-07 Score=100.81 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=54.4
Q ss_pred cccccccccHHHHHHHHHHHHC-cCCChhhhhcCCCC---CCCceeeecCCCCCchhhhhhhHHhhCCceeec
Q 007208 523 VTFADIGALEEIKESLQELVML-PLRRPDLFKGGLLK---PCRGILLFGPPGLGKQCWPRPLPKRLGQASLMS 591 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~-pl~~pe~~~~~~i~---~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~ 591 (613)
.+|++|.|.+++++.|.+++.. ...++..|+..+.. +++++||+||||||||++|+++|++++.+++..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3589999999999999998864 22223344443432 568999999999999999999999999999843
No 96
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.29 E-value=1e-06 Score=81.63 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=54.5
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh----------CCceeeccC
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL----------GQASLMSPC 593 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~----------g~~fi~~v~ 593 (613)
+|+++.|.++..+.+.+.+.. ....++||+||||||||++|+++|.++ +.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 477888999888887776532 235679999999999999999999997 666652211
Q ss_pred ------CCcchHHHHHHHHHHHHh
Q 007208 594 ------LPSLPNGLVRMRRMFELY 611 (613)
Q Consensus 594 ------~~~lge~e~~Ir~IF~~A 611 (613)
..+.+.....++++|+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~ 110 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEV 110 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCchhHHHHHHHHHHHHH
Confidence 224455566777777654
No 97
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.29 E-value=7.1e-06 Score=94.62 Aligned_cols=148 Identities=14% Similarity=0.215 Sum_probs=96.8
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEeecccchhhhhhhcCCCCCcccccCCCchhhhhhhccccCcccccccccc
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFSLKIQSKYGGTNKESHFQRSPSESALERLSGLFGSFSILSQKEE 184 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~~~~~~~~G~s~ke~~~~~s~~~~~~~~~~~~~g~~~~~~~~~~ 184 (613)
..+||+||++.++++|||+||+.++.+++.+|.+.+..+. .++.++|.-
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~-----------------------~~~~l~g~~-------- 537 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH-----------------------TVSRLIGAP-------- 537 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSS-----------------------CCSSSCCCC--------
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchh-----------------------hHhhhcCCC--------
Confidence 4699999999999999999999999999999988775110 012233311
Q ss_pred cccccccCCCCcccccCCccCCCCCccccccCccccccccccccccCCCCCCcCCCCcchhHHHHHHHHHHHHHhhhcCC
Q 007208 185 TQGTLRRQGSGVDITSRGTEGSFNHPALRRNASASANISNLASQSFSNTGNLKRTSSWSFDEKLLIQSIYRVLCYVSKTS 264 (613)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dek~~lqaL~evl~s~s~~~ 264 (613)
+ .+.+.++. ..|.+.+.. +.
T Consensus 538 -~-----------------------------------------------------g~~g~~~~---~~l~~~~~~---~~ 557 (758)
T 1r6b_X 538 -P-----------------------------------------------------GYVGFDQG---GLLTDAVIK---HP 557 (758)
T ss_dssp -S-----------------------------------------------------CSHHHHHT---THHHHHHHH---CS
T ss_pred -C-----------------------------------------------------CCcCcccc---chHHHHHHh---CC
Confidence 0 01111111 112233322 46
Q ss_pred CEEEEEccchhhhhhhhHHHHHHHHHHHhhc-----------CcE-EEEeeeeccCCC--C------------------c
Q 007208 265 PIVVYLRDVDKLIFKSQRTYNLFQKMMKKLL-----------ASV-LILGSRIVDLSN--D------------------Q 312 (613)
Q Consensus 265 P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~-----------g~V-lIiGS~~~ds~~--~------------------~ 312 (613)
+.||||||+|++ ..+....|...|+.-. .++ +|++++. .... . .
T Consensus 558 ~~vl~lDEi~~~---~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 633 (758)
T 1r6b_X 558 HAVLLLDEIEKA---HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA-GVRETERKSIGLIHQDNSTDAMEEIK 633 (758)
T ss_dssp SEEEEEETGGGS---CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS-SCC-----------------CHHHHH
T ss_pred CcEEEEeCcccc---CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc-chhhhhhcccCccccchHHHHHHHHH
Confidence 799999999994 3456667777777421 234 4444443 1100 0 0
Q ss_pred cccchHhhccCCceEEeCCCChHHHHHHHHHHHHH
Q 007208 313 REVDGRVTALFPYNIEIRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 313 ~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~~ 347 (613)
..+.+.+..+|+..|.+++|+++++..|++.++.+
T Consensus 634 ~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 634 KIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp HHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 14567788899999999999999999999998865
No 98
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.27 E-value=5.2e-05 Score=78.93 Aligned_cols=91 Identities=9% Similarity=0.070 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcC----cEEEEee-eeccCCCCccccchHhhccC
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLA----SVLILGS-RIVDLSNDQREVDGRVTALF 323 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g----~VlIiGS-~~~ds~~~~~~v~~~l~~lF 323 (613)
+++.+.+.+.. ...|.||+|||+|.+ .......|...++.+.. ++.||++ +..+ -...+...+.++|
T Consensus 112 ~~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~---~~~~l~~~~~~r~ 183 (389)
T 1fnn_A 112 FLALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDA---VLNNLDPSTRGIM 183 (389)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH---HHHTSCHHHHHHH
T ss_pred HHHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch---HHHHhCHHhhhcC
Confidence 44555555433 356999999999996 34555555566655443 6644443 2211 1134566776677
Q ss_pred Cc-eEEeCCCChHHHHHHHHHHHHH
Q 007208 324 PY-NIEIRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 324 ~~-~IeI~~P~ee~Rl~Ilk~~L~~ 347 (613)
.. .|++++++.++..++++..+..
T Consensus 184 ~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 184 GKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp TTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCHHHHHHHHHHHHHh
Confidence 65 8999999999999999887643
No 99
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.27 E-value=5.2e-07 Score=95.27 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=54.6
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhh-----------------cCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFK-----------------GGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~-----------------~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+|.|++++++.|...+..++++..... .....+..++||+||||||||++|+++|..++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 578999999999988854333332210 011234568999999999999999999999999998
Q ss_pred eccCC-----CcchHH-HHHHHHHHHH
Q 007208 590 MSPCL-----PSLPNG-LVRMRRMFEL 610 (613)
Q Consensus 590 ~~v~~-----~~lge~-e~~Ir~IF~~ 610 (613)
...+. .+.|.. ...++++|..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ 128 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQA 128 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHH
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhh
Confidence 43222 233433 3456666553
No 100
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.21 E-value=1.1e-06 Score=96.27 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=54.8
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh----------CCceeeccC
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL----------GQASLMSPC 593 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~----------g~~fi~~v~ 593 (613)
.+++|.|.++.++.+.+.+.. ....++||+||||||||++|+++|..+ +.+|+....
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 478899999999988877653 234578999999999999999999996 777773333
Q ss_pred -CCcchHHHHHHHHHHHHhh
Q 007208 594 -LPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 594 -~~~lge~e~~Ir~IF~~A~ 612 (613)
+.+.|+.+.+++.+|+.+.
T Consensus 245 ~~~~~g~~e~~~~~~~~~~~ 264 (468)
T 3pxg_A 245 GTKYRGEFEDRLKKVMDEIR 264 (468)
T ss_dssp --------CTTHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHH
Confidence 3466666778899998764
No 101
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=1.5e-05 Score=80.92 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=54.1
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
.+.||+|||+|.+-.. ....|...++..+..+.+|.+ ++....+.+.+.+++. .+++++|++++..++++.
T Consensus 107 ~~~viiiDe~~~l~~~---~~~~L~~~le~~~~~~~~il~-----~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~ 177 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG---AQQALRRTMELYSNSTRFAFA-----CNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQ 177 (323)
T ss_dssp CCEEEEEESGGGSCHH---HHHTTHHHHHHTTTTEEEEEE-----ESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHH
T ss_pred CceEEEEECcccCCHH---HHHHHHHHHhccCCCceEEEE-----eCChhhchhHHHhhce-EEeecCCCHHHHHHHHHH
Confidence 4899999999995332 234466677777666544443 1234567788888876 899999999999999987
Q ss_pred HHHH
Q 007208 344 QLEE 347 (613)
Q Consensus 344 ~L~~ 347 (613)
.+..
T Consensus 178 ~~~~ 181 (323)
T 1sxj_B 178 IIKL 181 (323)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 102
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=1.2e-06 Score=95.73 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=55.5
Q ss_pred cccccccccHHHH---HHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCCCcchH
Q 007208 523 VTFADIGALEEIK---ESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLPSLPN 599 (613)
Q Consensus 523 v~~ddIgGl~~vk---~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~~lge 599 (613)
.+|+++.|.++++ ..|...+.. . ...++||+||||||||++|++||+.++.+|+. +.... .
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~---~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~-l~a~~--~ 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------G---HLHSMILWGPPGTGKTTLAEVIARYANADVER-ISAVT--S 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------T---CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE-EETTT--C
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------C---CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE-EEecc--C
Confidence 3588999999998 677766654 1 12579999999999999999999999999983 33222 2
Q ss_pred HHHHHHHHHHHhh
Q 007208 600 GLVRMRRMFELYS 612 (613)
Q Consensus 600 ~e~~Ir~IF~~A~ 612 (613)
+...++++|+.|.
T Consensus 87 ~~~~ir~~~~~a~ 99 (447)
T 3pvs_A 87 GVKEIREAIERAR 99 (447)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3456777777653
No 103
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.20 E-value=9.4e-07 Score=91.37 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=49.8
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
.+|+++.|.+++++.+.+.+..... .-.++.++||+||||||||++|+++|.+++.+|+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 3699999999999999988865211 11345679999999999999999999999999984
No 104
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.19 E-value=1.4e-06 Score=89.55 Aligned_cols=56 Identities=20% Similarity=0.118 Sum_probs=47.7
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
.+|+++.|.+++++.+.+.+.. + ..+..+|++||||||||++|+++|++++.+|+.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3588999999999999988763 2 345678889999999999999999999999883
No 105
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.19 E-value=7.1e-07 Score=81.74 Aligned_cols=52 Identities=15% Similarity=0.023 Sum_probs=39.1
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
++.|.++..+.+.+.+.. +. .....|||+||||||||++|++++..++ +|+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~-------~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~ 56 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEA-------AA----KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVS 56 (143)
T ss_dssp ---CCCHHHHHHHHHHHH-------HH----TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred CceeCCHHHHHHHHHHHH-------Hh----CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence 466777777788777754 11 2245799999999999999999999988 8883
No 106
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.16 E-value=7.7e-07 Score=99.36 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=57.3
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccCC--------
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCL-------- 594 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~-------- 594 (613)
.-++|+.|++++++.+.+.+.+..... .+ +...+||+||||||||++|++||..++.+|+...++
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 346789999999999988776522111 11 456799999999999999999999999998843332
Q ss_pred -----CcchHHHHHHHHHHHHhh
Q 007208 595 -----PSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 595 -----~~lge~e~~Ir~IF~~A~ 612 (613)
.++|.....+++.|..|.
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~ 173 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAG 173 (543)
T ss_dssp -------------CHHHHHHTTC
T ss_pred hhHHHHHhccCchHHHHHHHHhh
Confidence 244555667788887763
No 107
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=3.2e-05 Score=78.59 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..+.||+|||+|.+-. .....|...++..+..+.+|.+ ++....+.+.+.++|. .+++++|++++..++++
T Consensus 109 ~~~~vliiDe~~~l~~---~~~~~L~~~le~~~~~~~~i~~-----~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ---DAQQALRRTMEMFSSNVRFILS-----CNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLR 179 (327)
T ss_dssp CSCEEEEEETGGGSCH---HHHHHHHHHHHHTTTTEEEEEE-----ESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHH
T ss_pred CCCeEEEEeCCCcCCH---HHHHHHHHHHHhcCCCCeEEEE-----eCCccccCHHHHhhCc-EEEecCCCHHHHHHHHH
Confidence 4689999999999532 3344566777777766654443 2234567788888876 89999999999988887
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 180 ~~~~ 183 (327)
T 1iqp_A 180 YIAE 183 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 108
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.13 E-value=2.3e-05 Score=90.50 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=54.7
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhh-----------cCc-EEEEeeeeccCCCC------ccccchHhhccCCc
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKL-----------LAS-VLILGSRIVDLSND------QREVDGRVTALFPY 325 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l-----------~g~-VlIiGS~~~ds~~~------~~~v~~~l~~lF~~ 325 (613)
.+.||||||+|++ ..++.+.|..+|+.- ... ++|++++......+ .....+.+..+|+.
T Consensus 579 ~~~vl~lDEi~~~---~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~ 655 (758)
T 3pxi_A 579 PYSVVLLDAIEKA---HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDE 655 (758)
T ss_dssp SSSEEEEECGGGS---CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSE
T ss_pred CCeEEEEeCcccc---CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCe
Confidence 5689999999995 345666677777751 123 45555543211100 01156778889999
Q ss_pred eEEeCCCChHHHHHHHHHHHHHH
Q 007208 326 NIEIRPPEDENHLVSWKSQLEED 348 (613)
Q Consensus 326 ~IeI~~P~ee~Rl~Ilk~~L~~d 348 (613)
.|.+++|+++++.+|++.++.+-
T Consensus 656 ~i~~~~l~~~~~~~i~~~~l~~~ 678 (758)
T 3pxi_A 656 IIVFHSLEKKHLTEIVSLMSDQL 678 (758)
T ss_dssp EEECC--CHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 109
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.08 E-value=1.7e-05 Score=86.60 Aligned_cols=77 Identities=10% Similarity=0.201 Sum_probs=52.6
Q ss_pred cCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 262 KTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 262 ~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
...+.||||||+|.+-...+. .|...++. +.|++||+.+ .+....+++++.++|. .+.+++|+.+++..++
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~---~LL~~le~--~~v~lI~att---~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il 174 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQD---AFLPHIED--GTITFIGATT---ENPSFELNSALLSRAR-VYLLKSLSTEDIEQVL 174 (447)
T ss_dssp TTCCEEEEEETTTCC---------CCHHHHHT--TSCEEEEEES---SCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHH
T ss_pred cCCCcEEEEeChhhhCHHHHH---HHHHHHhc--CceEEEecCC---CCcccccCHHHhCcee-EEeeCCcCHHHHHHHH
Confidence 357999999999995332222 23334443 5677777543 2334578889999886 7889999999999999
Q ss_pred HHHHHH
Q 007208 342 KSQLEE 347 (613)
Q Consensus 342 k~~L~~ 347 (613)
+..+.+
T Consensus 175 ~~~l~~ 180 (447)
T 3pvs_A 175 TQAMED 180 (447)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 987653
No 110
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.08 E-value=1.6e-06 Score=79.51 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
+|.|.....+.+.+.+.. +. .....|||+||||||||++|++|+..+ +.||+ ..++
T Consensus 2 ~iiG~s~~~~~~~~~~~~-------~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQ-------LS----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp --CCSSHHHHHHHHHHHH-------HT----TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CceeCCHHHHHHHHHHHH-------Hh----CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 456667777777766653 11 233569999999999999999999987 77887 4443
No 111
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.06 E-value=3.9e-05 Score=84.87 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=50.6
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-----------hcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCC
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-----------LLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPP 332 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-----------l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P 332 (613)
.|.||||||++.+ +.+....|...++. ++.+++|++++.... .....+++.++|...|.|++|
T Consensus 109 ~~~IL~IDEI~r~---~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe---~~~~~~aLldRF~~~i~v~~p 182 (500)
T 3nbx_X 109 EAEIVFLDEIWKA---GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPE---ADSSLEALYDRMLIRLWLDKV 182 (500)
T ss_dssp GCSEEEEESGGGC---CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCC---TTCTTHHHHTTCCEEEECCSC
T ss_pred cceeeeHHhHhhh---cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCC---ccccHHHHHHHHHHHHHHHHh
Confidence 3679999999983 23444445555652 233456777753221 122446899999999999999
Q ss_pred Ch-HHHHHHHHHH
Q 007208 333 ED-ENHLVSWKSQ 344 (613)
Q Consensus 333 ~e-e~Rl~Ilk~~ 344 (613)
++ ++|..|++..
T Consensus 183 ~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 183 QDKANFRSMLTSQ 195 (500)
T ss_dssp CCHHHHHHHHTCC
T ss_pred hhhhhHHHHHhcc
Confidence 98 7788888754
No 112
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.05 E-value=2.1e-06 Score=94.02 Aligned_cols=78 Identities=12% Similarity=0.230 Sum_probs=49.3
Q ss_pred HhhhcCCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHH
Q 007208 258 CYVSKTSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENH 337 (613)
Q Consensus 258 ~s~s~~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~R 337 (613)
..+....|.||||| +..+..+.|...++ .+.+.|||+.+.+.......++..+.++|. .|.|++|+.+++
T Consensus 261 ~~~~~~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~ 330 (468)
T 3pxg_A 261 DEIRQAGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDES 330 (468)
T ss_dssp HHHHTCCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHH
T ss_pred HHHHhcCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHH
Confidence 34444689999999 33344344444333 356878886443321111357889999997 599999999999
Q ss_pred HHHHHHHH
Q 007208 338 LVSWKSQL 345 (613)
Q Consensus 338 l~Ilk~~L 345 (613)
.+||+.++
T Consensus 331 ~~iL~~~~ 338 (468)
T 3pxg_A 331 IQILQGLR 338 (468)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99998764
No 113
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.05 E-value=3.6e-05 Score=99.30 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=31.2
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
.++|.||++.+++.+||+||+.+|..++.++-++
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e 680 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDD 680 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTS
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCC
Confidence 3789999999999999999999999999998755
No 114
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.05 E-value=3e-06 Score=86.67 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=48.8
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
.+|+++.|.+.+++.+.+.+... ... -.++.++||+||||||||++|+++|.+++.+|+.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~-------~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAA-------KAR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHH-------HHH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred ccHHHhhCHHHHHHHHHHHHHHH-------Hcc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 46899999999999998887641 110 1245689999999999999999999999999873
No 115
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.01 E-value=6.4e-06 Score=83.44 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=53.5
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..+.||+|||+|.+-. .....|...++..+..+++|.+ ++....+.+.+.++|. .|++++|+++++.++++
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~L~~~le~~~~~~~~i~~-----~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILS-----CNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp CCCEEEEEETGGGSCH---HHHHTTGGGTSSSSSSEEEEEE-----ESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCH---HHHHHHHHHHHhcCCCCeEEEE-----eCChhhcchHHHhhCe-EEEecCCCHHHHHHHHH
Confidence 4689999999999533 2233355556666666655543 2334577888888886 89999999999988887
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 172 ~~~~ 175 (319)
T 2chq_A 172 EICE 175 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 116
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.01 E-value=3.1e-06 Score=87.41 Aligned_cols=52 Identities=29% Similarity=0.335 Sum_probs=40.9
Q ss_pred CccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 521 ISVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+..+|++|.|.+++++.+...... ....++||+||||||||++|+++|..++
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 357799999999988765444332 1124599999999999999999999986
No 117
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.95 E-value=9.9e-05 Score=76.59 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
..+.||+|||+|.+- ......|.+.++..+..+++|... ++...+...+.+++ ..+++++|+.++..++++
T Consensus 118 ~~~~vliiDe~~~l~---~~~~~~Ll~~le~~~~~~~~Il~~-----~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~ 188 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLS---RHSFNALLKTLEEPPEHVKFLLAT-----TDPQKLPVTILSRC-LQFHLKALDVEQIRHQLE 188 (373)
T ss_dssp SSSEEEEEECGGGSC---HHHHHHHHHHHHSCCSSEEEEEEE-----SCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHH
T ss_pred CCeEEEEEECcchhc---HHHHHHHHHHHhcCCCceEEEEEe-----CChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHH
Confidence 468999999999952 233455667777777777555542 23346677787776 789999999999999888
Q ss_pred HHHHH
Q 007208 343 SQLEE 347 (613)
Q Consensus 343 ~~L~~ 347 (613)
..+.+
T Consensus 189 ~~~~~ 193 (373)
T 1jr3_A 189 HILNE 193 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 118
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.93 E-value=0.00016 Score=72.04 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=39.9
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhC---CeEEEeecc
Q 007208 62 NITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFE---AKLLLLDVT 138 (613)
Q Consensus 62 ~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~---a~LL~lD~~ 138 (613)
+.||++|-+. |+..+. +...+..-. .....|||+||++.++++|||++|++.. .+++.+|..
T Consensus 2 ~~~f~~~ig~-~~~~~~-~~~~~~~~~-------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 2 AEYKDNLLGE-ANSFLE-VLEQVSHLA-------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp --------CC-CHHHHH-HHHHHHHHT-------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CcccccceeC-CHHHHH-HHHHHHHHh-------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 3589998654 444444 433332111 1235699999999999999999999985 689999987
Q ss_pred cch
Q 007208 139 DFS 141 (613)
Q Consensus 139 d~~ 141 (613)
.+.
T Consensus 67 ~~~ 69 (265)
T 2bjv_A 67 ALN 69 (265)
T ss_dssp GSC
T ss_pred CCC
Confidence 764
No 119
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=9.1e-05 Score=76.26 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
.+.||+|||+|.+-.. ....|...++..+..+ +|+.+ +.+..+.+.+.++|. .+++++|.+++...+++
T Consensus 133 ~~~vliiDE~~~l~~~---~~~~Ll~~le~~~~~~~~il~~------~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~ 202 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD---AQSALRRTMETYSGVTRFCLIC------NYVTRIIDPLASQCS-KFRFKALDASNAIDRLR 202 (353)
T ss_dssp SCEEEEETTGGGSCHH---HHHHHHHHHHHTTTTEEEEEEE------SCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHH
T ss_pred CceEEEEECCCccCHH---HHHHHHHHHHhcCCCceEEEEe------CchhhCcchhhccCc-eEEeCCCCHHHHHHHHH
Confidence 5689999999996433 2344666777776554 33332 234567888888886 89999999999998888
Q ss_pred HHHH
Q 007208 343 SQLE 346 (613)
Q Consensus 343 ~~L~ 346 (613)
..+.
T Consensus 203 ~~~~ 206 (353)
T 1sxj_D 203 FISE 206 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 120
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.92 E-value=4.4e-06 Score=83.51 Aligned_cols=58 Identities=14% Similarity=-0.001 Sum_probs=40.1
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC---Cceeec
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG---QASLMS 591 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g---~~fi~~ 591 (613)
.+|+++.|.+...+.+.+.+.... .....+||+||||||||++|++++..+. .+|+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 478999999988888877765411 1236799999999999999999999875 677743
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.90 E-value=1e-05 Score=76.43 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=41.0
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+|+++.|.++.++.+.+.+.. + ....++|+||||||||++|++++.++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999888764 1 12349999999999999999999986
No 122
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.89 E-value=6.5e-06 Score=85.01 Aligned_cols=54 Identities=20% Similarity=0.060 Sum_probs=44.0
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCceeeccC
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPC 593 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~ 593 (613)
+++|.|.+++++.+...+.. ..++||+||||||||++|+++|..++.+|+...+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 45788999988887766543 1479999999999999999999999999874333
No 123
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.86 E-value=2.2e-05 Score=64.91 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=59.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcc
Q 007208 330 RPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTD 409 (613)
Q Consensus 330 ~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~ 409 (613)
++|+.++|.+||+.++.. +-...+++...|+..|.+ |++++|+.+|..|..+++.+.
T Consensus 1 plPd~~~R~~Il~~~l~~----------------~~~~~~~dl~~la~~t~G---~SGADi~~l~~eA~~~a~~~~---- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK----------------MNLTRGINLRKIAELMPG---ASGAEVKGVCTEAGMYALRER---- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT----------------SEECTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTT----
T ss_pred CcCCHHHHHHHHHHHhcC----------------CCCCCccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhC----
Confidence 689999999999988632 112357778888888887 999999999999998888753
Q ss_pred cCCCceeechhhHHhhhhhhh
Q 007208 410 YRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 410 ~~~~~l~is~~sl~~al~~~q 430 (613)
...|+.+||..|+..+.
T Consensus 58 ----~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 58 ----RVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp ----CSEECHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHH
Confidence 34699999999998553
No 124
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.83 E-value=1.7e-05 Score=92.92 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=56.6
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh----------CCceeecc
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL----------GQASLMSP 592 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~----------g~~fi~~v 592 (613)
-+|+++.|.++..+.+.+.+.. ....++||+||||||||++|+++|..+ +.+++...
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 3578899999888888776533 234579999999999999999999997 77777322
Q ss_pred C------CCcchHHHHHHHHHHHHhh
Q 007208 593 C------LPSLPNGLVRMRRMFELYS 612 (613)
Q Consensus 593 ~------~~~lge~e~~Ir~IF~~A~ 612 (613)
. ..+.|+.+..++++|+.+.
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~ 259 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVV 259 (854)
T ss_dssp C-----------CHHHHHHHHHHHHH
T ss_pred hHHhhccCccchHHHHHHHHHHHHHH
Confidence 2 2355667788999998764
No 125
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.78 E-value=2.5e-05 Score=80.49 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=41.0
Q ss_pred Ccccccccc-c--cHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 521 ISVTFADIG-A--LEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 521 ~~v~~ddIg-G--l~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
+..+|+++. | .......+...+..| + ....+++|+||||||||++|+++|+++ +.+++
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc----------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 356788875 3 333344455544431 1 235689999999999999999999998 88887
No 126
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=1.5e-05 Score=75.02 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+....+++|+||||||||++++++|..+
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 333446789999999999999999999886
No 127
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=1.9e-05 Score=80.29 Aligned_cols=50 Identities=30% Similarity=0.376 Sum_probs=41.3
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+|+++.|.+++++.+...+.. + .. ..+||+||||||||++|+++|+++.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKT-----------G-SM-PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHH-----------T-CC-CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHc-----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4588999999999999887754 1 12 2499999999999999999999863
No 128
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=1.1e-05 Score=83.09 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=40.6
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+|++|.|.+++++.+...+.. + .+ ..+||+||||||||++|+++|.+++
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKS-----------A-NL-PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTC-----------T-TC-CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhc-----------C-CC-CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999988877643 1 11 2399999999999999999999864
No 129
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00051 Score=70.96 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=53.8
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcE-EEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASV-LILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSW 341 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~V-lIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Il 341 (613)
..|-||+|||++. +.. .....|.+.++..+.++ +|+.++ +...+.+.+.+++ ..+++++|+.+++..++
T Consensus 133 ~~~~vlilDE~~~-L~~--~~~~~L~~~le~~~~~~~~Il~t~------~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l 202 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTK--DAQAALRRTMEKYSKNIRLIMVCD------SMSPIIAPIKSQC-LLIRCPAPSDSEISTIL 202 (354)
T ss_dssp -CCEEEEEECTTS-SCH--HHHHHHHHHHHHSTTTEEEEEEES------CSCSSCHHHHTTS-EEEECCCCCHHHHHHHH
T ss_pred CCCeEEEEeCccc-cCH--HHHHHHHHHHHhhcCCCEEEEEeC------CHHHHHHHHHhhc-eEEecCCcCHHHHHHHH
Confidence 4788999999999 443 33344666777766554 555543 3345777888888 88999999999999999
Q ss_pred HHHHH
Q 007208 342 KSQLE 346 (613)
Q Consensus 342 k~~L~ 346 (613)
+..+.
T Consensus 203 ~~~~~ 207 (354)
T 1sxj_E 203 SDVVT 207 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.73 E-value=2.6e-05 Score=75.22 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=37.9
Q ss_pred ccccccccc---cHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 522 SVTFADIGA---LEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 522 ~v~~ddIgG---l~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..+|+++.+ ...+.+.+..++.. ....+++|+||||||||++|+++|.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 356777765 24566666665543 1356899999999999999999999875
No 131
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=3e-05 Score=78.59 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=40.8
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+|+++.|.+++++.+...+.. + ..+. +||+||||||||++|+++|+++
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHh
Confidence 3478999999999999888754 1 2233 9999999999999999999986
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.71 E-value=3.1e-05 Score=73.89 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=43.3
Q ss_pred hhhcCCCccCCCCccccccccccH-H---HHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 509 KRIRPEVIPSNEISVTFADIGALE-E---IKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 509 ~~~~~~ii~~~~~~v~~ddIgGl~-~---vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++....++..-...+|+++.+.. . +.+.+.+++.. +.. ...+++++|+||||||||++|++++.++
T Consensus 8 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 8 SLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAE-------YEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp HHEEEESSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHH-------CCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHH-------hhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444332356788887654 2 23333333322 110 0123789999999999999999999987
Q ss_pred ---CCcee
Q 007208 585 ---GQASL 589 (613)
Q Consensus 585 ---g~~fi 589 (613)
+.+++
T Consensus 79 ~~~~~~~~ 86 (202)
T 2w58_A 79 AKRNVSSL 86 (202)
T ss_dssp HTTTCCEE
T ss_pred HHcCCeEE
Confidence 45554
No 133
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.71 E-value=2.9e-05 Score=80.50 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=44.4
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---------CCceee
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---------GQASLM 590 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---------g~~fi~ 590 (613)
.+++.|.++..+.+...+...+ . ...+..++|+||||||||++|++++.++ +.+++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~------~---~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL------R---GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIY 83 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT------S---SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHH------c---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 4688999999888877654311 1 1345689999999999999999999998 777763
No 134
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.70 E-value=2.5e-05 Score=81.39 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=45.1
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+|+++.|.+.+++.+...+.... .. + .++..++|+||||||||++|+++|.+++.++.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~-----~~--~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK-----MR--G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH-----HH--T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred cHHHccCcHHHHHHHHHHHHHHH-----hc--C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 57888888888888876664310 00 1 34467999999999999999999999998876
No 135
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.65 E-value=2.5e-05 Score=79.03 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=40.2
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+|+++.|.+++++.+...+.. + ..+ .+||+||||||||++|+++|+++
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-----------K-NIP-HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-----------T-CCC-CEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-----------C-CCC-eEEEECcCCcCHHHHHHHHHHHh
Confidence 45689999999999888765532 1 122 39999999999999999999986
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.64 E-value=4.3e-05 Score=72.82 Aligned_cols=52 Identities=31% Similarity=0.360 Sum_probs=42.5
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
..|+++.|.++.++.+.+.+.. + ..+..++|+||||||||++|++++.+++.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3478899999999999887753 1 22357999999999999999999998754
No 137
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.64 E-value=3.3e-05 Score=78.37 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=42.3
Q ss_pred ccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 526 ADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 526 ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
++|.|.+.+++.+...+.... ..-.....|...+||+||||||||++|+++|..+ +.+|+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~----~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRAR----AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHH----HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred hhcCCHHHHHHHHHHHHHHHh----cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 356788999888888875411 0001112334579999999999999999999997 44565
No 138
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.60 E-value=9.5e-05 Score=62.66 Aligned_cols=75 Identities=11% Similarity=0.190 Sum_probs=60.0
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCc
Q 007208 329 IRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDT 408 (613)
Q Consensus 329 I~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~ 408 (613)
-.||+.++|.+||+.++.. +-...+++...|+..|.+ |++++|+.+|..|.-.++.+.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~----------------~~l~~dvdl~~LA~~T~G---~SGADL~~l~~eAa~~alr~~--- 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRK----------------MNLTRGINLRKIAELMPG---ASGAEVKGVCTEAGMYALRER--- 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTT----------------SEECTTCCCHHHHHTCSS---CCHHHHHHHHHHHHHHHHHTT---
T ss_pred CCCcCHHHHHHHHHHHHcC----------------CCCCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHc---
Confidence 3699999999999988632 112347788888888888 999999999999998888754
Q ss_pred ccCCCceeechhhHHhhhhhhh
Q 007208 409 DYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 409 ~~~~~~l~is~~sl~~al~~~q 430 (613)
...|+.+||..|+...+
T Consensus 66 -----~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 66 -----RVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp -----CSEECHHHHHHHHHHHH
T ss_pred -----CCCCCHHHHHHHHHHHc
Confidence 34699999999997543
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.60 E-value=2.5e-05 Score=81.42 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=44.8
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh-----------CCcee
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL-----------GQASL 589 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~-----------g~~fi 589 (613)
.+++.|.++..+.+.+.+...+ .. ..++.++|+||||||||++|++++.++ +.+++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~------~~---~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFV------KN---EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHH------TT---CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHH------cC---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 3688999999998888775411 11 345689999999999999999999987 88877
No 140
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.59 E-value=4.1e-05 Score=80.07 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=24.8
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+.+++|+||||||||+++++++.++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999998
No 141
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.58 E-value=0.0022 Score=67.12 Aligned_cols=93 Identities=8% Similarity=0.140 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhcCCCEEEEEccchhhhhh---hhHHHHHHHHHHHhhc-----CcEEEEee-eeccCCCCccccc---
Q 007208 249 LIQSIYRVLCYVSKTSPIVVYLRDVDKLIFK---SQRTYNLFQKMMKKLL-----ASVLILGS-RIVDLSNDQREVD--- 316 (613)
Q Consensus 249 ~lqaL~evl~s~s~~~P~IL~idDiD~~l~~---s~r~~~~l~~~l~~l~-----g~VlIiGS-~~~ds~~~~~~v~--- 316 (613)
+++.|.+.+. ....|.||+|||++.+... +......+...+..+. .++.||++ +..+ -...++
T Consensus 125 ~~~~l~~~l~--~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~---~~~~l~~~~ 199 (412)
T 1w5s_A 125 ILKALVDNLY--VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVR---ALSYMREKI 199 (412)
T ss_dssp HHHHHHHHHH--HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETH---HHHHHHHHC
T ss_pred HHHHHHHHHH--hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEecccc---HHHHHhhhc
Confidence 4566666655 2357999999999996542 3455444455566554 56655543 2211 011233
Q ss_pred hHhhccCCceEEeCCCChHHHHHHHHHHHH
Q 007208 317 GRVTALFPYNIEIRPPEDENHLVSWKSQLE 346 (613)
Q Consensus 317 ~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~L~ 346 (613)
..+.+.|...+++++++.++..++++..+.
T Consensus 200 ~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 200 PQVESQIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhhcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 455566766799999999999999887654
No 142
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=5.5e-05 Score=78.58 Aligned_cols=49 Identities=24% Similarity=0.404 Sum_probs=39.9
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+|+++.|.+++++.|...+.. + ..+. +||+||||||||++|+++|..+.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~-----------g-~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDE-----------G-KLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHT-----------T-CCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHhcCcHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 477899999999988887754 2 2223 99999999999999999999863
No 143
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.54 E-value=6.6e-05 Score=77.93 Aligned_cols=52 Identities=31% Similarity=0.360 Sum_probs=43.1
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.+|+++.|.+++++.+...+.. + ..+..+||+||||||||++|+++|+.++.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3588999999999999887753 1 23457899999999999999999998864
No 144
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.49 E-value=0.0021 Score=66.79 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHH
Q 007208 263 TSPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWK 342 (613)
Q Consensus 263 ~~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk 342 (613)
...-|++|||+|.+-. ...+.|.+.++.-+..+++|.. ++.+..+.+.|.++.. .+++++|++++..++++
T Consensus 107 ~~~kvviIdead~l~~---~a~naLLk~lEep~~~~~~Il~-----t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~ 177 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTD---AAANALLKTLEEPPAETWFFLA-----TREPERLLATLRSRCR-LHYLAPPPEQYAVTWLS 177 (334)
T ss_dssp SSCEEEEESCGGGBCH---HHHHHHHHHHTSCCTTEEEEEE-----ESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHH
T ss_pred CCcEEEEECchhhcCH---HHHHHHHHHhcCCCCCeEEEEE-----eCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHH
Confidence 4579999999999532 3334566667776666644443 2234678888988874 79999999999988887
Q ss_pred HHH
Q 007208 343 SQL 345 (613)
Q Consensus 343 ~~L 345 (613)
.++
T Consensus 178 ~~~ 180 (334)
T 1a5t_A 178 REV 180 (334)
T ss_dssp HHC
T ss_pred Hhc
Confidence 664
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.47 E-value=0.0046 Score=64.18 Aligned_cols=132 Identities=5% Similarity=0.033 Sum_probs=79.1
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhh------------------cCcEEEEeeeeccCCCCccccchHhhccCCc
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKL------------------LASVLILGSRIVDLSNDQREVDGRVTALFPY 325 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l------------------~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~ 325 (613)
.+.|+||||++.+....++.. ...++.. -..+.+++. ++++..++..+.++|..
T Consensus 102 ~~~v~~iDE~~~l~~~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a-----t~~~~~Ls~~l~sR~~l 173 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKAVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA-----TTRSGLLSSPLRSRFGI 173 (334)
T ss_dssp TTCEEEEETGGGCCHHHHHHH---HHHHHTSCCCC---------------CCCEEEEE-----ESCGGGSCHHHHTTCSE
T ss_pred CCCEEEEcchhhcCHHHHHHH---HHHHHhcccceeeccCcccccccccCCCeEEEEe-----cCCcccCCHHHHHhcCc
Confidence 567999999998654323321 1122211 112444442 33456788899999988
Q ss_pred eEEeCCCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcC
Q 007208 326 NIEIRPPEDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNN 405 (613)
Q Consensus 326 ~IeI~~P~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~ 405 (613)
.+.+.+|+.+++.++++..... . ++.+-.+ .+..++..+.+ +.+.+..++..+..++....
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~--~------~~~~~~~-------~~~~ia~~~~G----~~R~a~~ll~~~~~~a~~~~ 234 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASL--M------DVEIEDA-------AAEMIAKRSRG----TPRIAIRLTKRVRDMLTVVK 234 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHH--T------TCCBCHH-------HHHHHHHTSTT----CHHHHHHHHHHHHHHHHHHT
T ss_pred eeeCCCCCHHHHHHHHHHHHHH--c------CCCcCHH-------HHHHHHHhcCC----ChHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999876431 0 0000000 01233333433 44677788888877765432
Q ss_pred CCcccCCCceeechhhHHhhhhhhh
Q 007208 406 EDTDYRNGKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 406 ~~~~~~~~~l~is~~sl~~al~~~q 430 (613)
. -.|+.+.+..++..+.
T Consensus 235 ~--------~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 235 A--------DRINTDIVLKTMEVLN 251 (334)
T ss_dssp C--------SSBCHHHHHHHHHHHT
T ss_pred C--------CCcCHHHHHHHHHHhC
Confidence 2 1378888999987653
No 146
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.46 E-value=6.6e-05 Score=77.45 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=42.0
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh---CCceeeccCC
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASLMSPCL 594 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi~~v~~ 594 (613)
+|.|.....+.+.+.+..- ......+||+||||||||++|++|+..+ +.||+...++
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 5667777777777776541 1234679999999999999999999965 5778744333
No 147
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.44 E-value=0.00021 Score=80.62 Aligned_cols=155 Identities=10% Similarity=0.118 Sum_probs=85.6
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHh-------------hcCcEEEEeeeecc-CCCCc-------cccchHhhcc
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKK-------------LLASVLILGSRIVD-LSNDQ-------REVDGRVTAL 322 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~-------------l~g~VlIiGS~~~d-s~~~~-------~~v~~~l~~l 322 (613)
...||||||+|++ .. +....|...|+. ++.++.||++.... ...+. -.+++++.++
T Consensus 391 ~~gil~IDEid~l-~~--~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~R 467 (595)
T 3f9v_A 391 DGGIAVIDEIDKM-RD--EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSR 467 (595)
T ss_dssp SSSEECCTTTTCC-CS--HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGG
T ss_pred CCCcEEeehhhhC-CH--hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhh
Confidence 5679999999995 32 333445555653 12345555543321 11110 1688899999
Q ss_pred CC-ceEEeCCCChHHHHHHHHHHHHHHHH-----HhhhhhhhhHHHHHhh---cCCCCc---hhhhhhcc----------
Q 007208 323 FP-YNIEIRPPEDENHLVSWKSQLEEDMK-----MMQAKDNRNHIMEVLS---ANDLDC---DDLDSINV---------- 380 (613)
Q Consensus 323 F~-~~IeI~~P~ee~Rl~Ilk~~L~~d~k-----~~~~~~N~~~I~~vL~---~~dl~c---~dLa~l~~---------- 380 (613)
|+ ..+....|+++ +..|.+..+..... .. ....+..+..... ...++- .-|..+..
T Consensus 468 FDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l-~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~ 545 (595)
T 3f9v_A 468 FDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNII-DIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETP 545 (595)
T ss_dssp CSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTT-CCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCS
T ss_pred CeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 96 66777788888 88887766542110 00 0000111100000 001111 11111110
Q ss_pred -cCcccchhhHHHHHHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhhc
Q 007208 381 -ADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQE 431 (613)
Q Consensus 381 -~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~ 431 (613)
.....+.+.++.++.-|..++.++..+ .++.+|+..|+.+++.
T Consensus 546 ~~~~~~s~R~l~~lirla~a~A~l~~~~--------~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 546 DSPILITPRQLEALIRISEAYAKMALKA--------EVTREDAERAINIMRL 589 (595)
T ss_dssp SSCBCSSTTTTTHHHHHHHHHHHTTSSC--------CSSHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHhCcC--------CCCHHHHHHHHHHHHH
Confidence 023588899999999999888765432 3888999999998864
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=7.7e-05 Score=77.19 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=39.6
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+|+++.|.+++.+.++..+.. .+ ..+. ++|+||||||||++++++|.++
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~----------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ----------PR-DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC----------TT-CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh----------CC-CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999998888765411 12 2234 9999999999999999999964
No 149
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.40 E-value=0.00032 Score=87.18 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=44.3
Q ss_pred CCcccccccccccccHHHHHHHHHHHHhhcCC----------Cccccc-----ccC-------C----CCCCCceEeecc
Q 007208 59 RESNITFDEFPYYLSGQTRALLTSAAYVHLKH----------TEVSKY-----TRN-------L----SPASQAILLSGP 112 (613)
Q Consensus 59 ~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~----------~~~~k~-----~~~-------L----~~~~~~ILLsGP 112 (613)
++..|+|++.|.. +..|..+++++-..|++ ++.++. ... | .+..+.+||+||
T Consensus 1013 ~~~~~~~~~~~~~--~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~ 1090 (1706)
T 3cmw_A 1013 SASGSSTGSMSAI--DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGP 1090 (1706)
T ss_dssp -----------CT--THHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECS
T ss_pred ccCCceeeecCCc--cHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcC
Confidence 5667999999999 88999999999999955 222221 011 1 234455999999
Q ss_pred hhHHHHHHHHHHHhhhCCe
Q 007208 113 AELYQQMLAKALAHFFEAK 131 (613)
Q Consensus 113 ~e~yqe~LaKALA~~f~a~ 131 (613)
+.+++++||||+|.+.++.
T Consensus 1091 ~g~GKT~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1091 ESSGKTTLTLQVIAAAQRE 1109 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHhhhc
Confidence 9999999999999877554
No 150
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.39 E-value=0.00016 Score=78.51 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=39.2
Q ss_pred Ccccccccc-ccHH--HHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh-----CCcee
Q 007208 521 ISVTFADIG-ALEE--IKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL-----GQASL 589 (613)
Q Consensus 521 ~~v~~ddIg-Gl~~--vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~-----g~~fi 589 (613)
+..+|+++. |..+ ....+...... .+ . ..+++||||||||||++|++||+++ +.+++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~ 164 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKH----------PG-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVM 164 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHS----------TT-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhC----------CC-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 356788876 4333 33333433332 11 1 5679999999999999999999988 77766
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.37 E-value=0.00023 Score=73.92 Aligned_cols=57 Identities=19% Similarity=0.120 Sum_probs=43.5
Q ss_pred cccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCC--ceeeecCCCCCchhhhhhhHHhh----CCceee
Q 007208 525 FADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCR--GILLFGPPGLGKQCWPRPLPKRL----GQASLM 590 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~--giLL~GPPGtGKT~lAkAiA~e~----g~~fi~ 590 (613)
++++.|-++..+.+.+.+... ... ..+. .++|+||||||||+++++++.++ +.+++.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~------~~~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 78 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNW------LRN---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVY 78 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHH------HHS---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHH------HcC---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEE
Confidence 468899999998888877541 111 1223 79999999999999999999998 566663
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.33 E-value=0.00013 Score=75.45 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=43.9
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhh------CCcee
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRL------GQASL 589 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~------g~~fi 589 (613)
..+++.|.++..+.+.+.+...+ .. ..+..++|+||||||||++|++++.++ +.+++
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~------~~---~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 80 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLY------RE---EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV 80 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGG------GT---CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHH------cC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEE
Confidence 35788999998888877654311 11 345689999999999999999999988 77776
No 153
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.31 E-value=0.00016 Score=74.74 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=23.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..+++|+||||||||+||+++|.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998764
No 154
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.26 E-value=0.00013 Score=74.58 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+.++++||||||||||++|.|||+.+
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 445689999999999999999999974
No 155
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.0046 Score=63.98 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=51.8
Q ss_pred CCEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHH
Q 007208 264 SPIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKS 343 (613)
Q Consensus 264 ~P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~ 343 (613)
.+-|++|||+|.+-. .....|...++..+..+.++.. ++....+.+.+.+++. .+.+.++++++..++++.
T Consensus 110 ~~~viiiDe~~~l~~---~~~~~L~~~le~~~~~~~~il~-----~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 110 GFKLIILDEADAMTN---AAQNALRRVIERYTKNTRFCVL-----ANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIAN 180 (340)
T ss_dssp SCEEEEETTGGGSCH---HHHHHHHHHHHHTTTTEEEEEE-----ESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCH---HHHHHHHHHHhcCCCCeEEEEE-----ecCccccchhHHhhce-eEeccCCCHHHHHHHHHH
Confidence 478999999999533 2334466777877776644432 2345677888888876 789999999888777776
Q ss_pred HH
Q 007208 344 QL 345 (613)
Q Consensus 344 ~L 345 (613)
.+
T Consensus 181 ~~ 182 (340)
T 1sxj_C 181 VL 182 (340)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 156
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.23 E-value=0.0001 Score=72.62 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=27.1
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++..+++|+|||||||||++|.++|+.+.-.++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 344568999999999999999999999864443
No 157
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.21 E-value=0.00018 Score=79.68 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=35.4
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCC
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.|.|.+++++.+...+.. ...+||+||||||||++|+++|..++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 466778888776655432 247999999999999999999998853
No 158
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.21 E-value=0.00085 Score=61.04 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
...|||+||++.++++||||++++.+ +++.+|..++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~ 63 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYL 63 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCC
Confidence 45699999999999999999999988 77777665543
No 159
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.0038 Score=64.54 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=51.6
Q ss_pred CEEEEEccchhhhhhhhHHHHHHHHHHHhhcCcEEEEeeeeccCCCCccccchHhhccCCceEEeCCCChHHHHHHHHHH
Q 007208 265 PIVVYLRDVDKLIFKSQRTYNLFQKMMKKLLASVLILGSRIVDLSNDQREVDGRVTALFPYNIEIRPPEDENHLVSWKSQ 344 (613)
Q Consensus 265 P~IL~idDiD~~l~~s~r~~~~l~~~l~~l~g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~IeI~~P~ee~Rl~Ilk~~ 344 (613)
.-|++|||+|.+-. ...+.|.+.|+.-+..+++|.. ++.+.++.+.|.++ .+++++|++++-.+.++..
T Consensus 83 ~kvviIdead~lt~---~a~naLLk~LEep~~~t~fIl~-----t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 83 RKYVIVHDCERMTQ---QAANAFLKALEEPPEYAVIVLN-----TRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp SEEEEETTGGGBCH---HHHHHTHHHHHSCCTTEEEEEE-----ESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHH
T ss_pred ceEEEeccHHHhCH---HHHHHHHHHHhCCCCCeEEEEE-----ECChHhChHHHHce---eEeCCCCCHHHHHHHHHHH
Confidence 47999999999532 2345577788887777644443 12346788889888 8999999999998888766
Q ss_pred H
Q 007208 345 L 345 (613)
Q Consensus 345 L 345 (613)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 4
No 160
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.13 E-value=0.019 Score=75.33 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCEEEEEccchhhh---hhhhHHHHHHHHHHHhhc------------CcEEEEeeeeccCCCCccccchHhhccCCceEE
Q 007208 264 SPIVVYLRDVDKLI---FKSQRTYNLFQKMMKKLL------------ASVLILGSRIVDLSNDQREVDGRVTALFPYNIE 328 (613)
Q Consensus 264 ~P~IL~idDiD~~l---~~s~r~~~~l~~~l~~l~------------g~VlIiGS~~~ds~~~~~~v~~~l~~lF~~~Ie 328 (613)
..+|+||||++--- -|++....+|..+++.-. ..+.++|+........-..+++++.++|.. |.
T Consensus 1374 k~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~ 1452 (3245)
T 3vkg_A 1374 KWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LL 1452 (3245)
T ss_dssp CEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EE
T ss_pred ceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE-EE
Confidence 56899999997511 123678888888888411 234455553322112346789999999988 99
Q ss_pred eCCCChHHHHHHHHHHHHH
Q 007208 329 IRPPEDENHLVSWKSQLEE 347 (613)
Q Consensus 329 I~~P~ee~Rl~Ilk~~L~~ 347 (613)
|+.|+++....|+...+..
T Consensus 1453 i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999999877643
No 161
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.00022 Score=68.30 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=28.7
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+.+.|+|.||||||||++++++|..+|.+|+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 44567999999999999999999999999998
No 162
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.00032 Score=72.58 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC------CceeeccCCCcchHHHHH
Q 007208 530 ALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG------QASLMSPCLPSLPNGLVR 603 (613)
Q Consensus 530 Gl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g------~~fi~~v~~~~lge~e~~ 603 (613)
|.+++.+.|+..+.. +. ...+|||||||||||++|+++|+.++ ..|+ .+.......+-..
T Consensus 1 g~~~~~~~L~~~i~~-----------~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~-~l~~~~~~~~id~ 66 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVL-EIDPEGENIGIDD 66 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEE-EECCSSSCBCHHH
T ss_pred ChHHHHHHHHHHHHC-----------CC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEE-EEcCCcCCCCHHH
Confidence 456677777776654 22 34799999999999999999999752 2343 2222111123456
Q ss_pred HHHHHHHhh
Q 007208 604 MRRMFELYS 612 (613)
Q Consensus 604 Ir~IF~~A~ 612 (613)
||++++.|+
T Consensus 67 ir~li~~~~ 75 (305)
T 2gno_A 67 IRTIKDFLN 75 (305)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 788887764
No 163
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.09 E-value=0.0004 Score=63.33 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.9
Q ss_pred CCCCceEeecchhHHHHHHHHHHHhhh---CCeEEEeecccc
Q 007208 102 PASQAILLSGPAELYQQMLAKALAHFF---EAKLLLLDVTDF 140 (613)
Q Consensus 102 ~~~~~ILLsGP~e~yqe~LaKALA~~f---~a~LL~lD~~d~ 140 (613)
.....|||+||++.++++||||++++. +.+++ +|...+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP 62 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence 344569999999999999999999986 66777 766554
No 164
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.0002 Score=80.81 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=39.5
Q ss_pred cccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 527 DIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 527 dIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.|.|.+++++.+.-.+.. ..+.......+.....+||+||||||||++|+++|..++..++
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCcee
Confidence 567888888766332221 1111111112233347999999999999999999999886665
No 165
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.91 E-value=0.002 Score=66.35 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=33.5
Q ss_pred CCCCceEeecchhHHHHHHHHHHHhhh---CCeEEEeecccch
Q 007208 102 PASQAILLSGPAELYQQMLAKALAHFF---EAKLLLLDVTDFS 141 (613)
Q Consensus 102 ~~~~~ILLsGP~e~yqe~LaKALA~~f---~a~LL~lD~~d~~ 141 (613)
.....|||+||++.++++||+++++.. +.+++.+|...++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 345679999999999999999999965 6778888877664
No 166
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.83 E-value=0.00055 Score=64.03 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=27.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+-|+|.||||+|||++|+++|..++++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 356999999999999999999999999988
No 167
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.78 E-value=0.00064 Score=64.81 Aligned_cols=30 Identities=37% Similarity=0.665 Sum_probs=27.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.-|+|.||||+|||++|+.+|..++++++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 345889999999999999999999999988
No 168
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.76 E-value=0.00059 Score=63.09 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=27.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-|+|.|+||||||++|+.+|..+|++|+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46889999999999999999999999998
No 169
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.73 E-value=0.0017 Score=54.96 Aligned_cols=71 Identities=6% Similarity=0.112 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCC
Q 007208 333 EDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRN 412 (613)
Q Consensus 333 ~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~ 412 (613)
+.++|.+||+.++.. +-...+++...|+..|.+ |++++|..+|..|.-+++.....
T Consensus 2 d~~~R~~Il~~~~~~----------------~~~~~dvdl~~lA~~t~G---~SGADl~~l~~eAa~~a~r~~~~----- 57 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS----------------MSVERGIRWELISRLCPN---STGAELRSVCTEAGMFAIRARRK----- 57 (88)
T ss_dssp CSSHHHHHHHHHHTT----------------SCBCSCCCHHHHHHTCSS---CCHHHHHHHHHHHHHHHHHHSCS-----
T ss_pred CHHHHHHHHHHHHCC----------------CCCCCccCHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhccc-----
Confidence 578999999988632 112357788888888888 99999999999999888876432
Q ss_pred CceeechhhHHhhhhhhh
Q 007208 413 GKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 413 ~~l~is~~sl~~al~~~q 430 (613)
.|+.+||..|+..+.
T Consensus 58 ---~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 58 ---VATEKDFLKAVDKVI 72 (88)
T ss_dssp ---SBCHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHHHh
Confidence 389999999998654
No 170
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.73 E-value=0.0024 Score=53.07 Aligned_cols=71 Identities=11% Similarity=0.174 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCC
Q 007208 333 EDENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRN 412 (613)
Q Consensus 333 ~ee~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~ 412 (613)
+.++|.+||+.++.. +-...+++...|+..|.+ |++++|..+|..|...++.+.
T Consensus 2 d~~~R~~Il~~~l~~----------------~~~~~~vdl~~la~~t~G---~SGADi~~l~~eA~~~a~~~~------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSK----------------MNLSEEVDLEDYVARPDK---ISGADINSICQESGMLAVREN------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTT----------------SCBCTTCCTHHHHTSSCC---CCHHHHHHHHHHHHHGGGTSC-------
T ss_pred CHHHHHHHHHHHhCC----------------CCCCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc-------
Confidence 578999999988632 111346777888888777 999999999999998887654
Q ss_pred CceeechhhHHhhhhhhh
Q 007208 413 GKLIISSKSLSHGLSIFQ 430 (613)
Q Consensus 413 ~~l~is~~sl~~al~~~q 430 (613)
...|+++||..|+..++
T Consensus 56 -~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 56 -RYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp -CSSBCHHHHHHHHHHHC
T ss_pred -cCCcCHHHHHHHHHHHc
Confidence 24599999999998554
No 171
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.71 E-value=0.001 Score=74.94 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=42.7
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
...|+++.|.+.+++.+...+.. ...++|+||||||||++|++||..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 45689999999999888777653 1479999999999999999999987644
No 172
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.69 E-value=0.00068 Score=72.41 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
.++.+.+.++|+||||+|||++++++|...+..++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 366778889999999999999999999998877763
No 173
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.68 E-value=0.0007 Score=64.01 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=27.3
Q ss_pred CCceeeecCCCCCchhhhhhhHHh-hCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR-LGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e-~g~~fi 589 (613)
..-|+|.||||||||++++.+|.. +|++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 345899999999999999999999 799998
No 174
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.63 E-value=0.0017 Score=67.56 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 532 EEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 532 ~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.++.+.+...+.. + +.+..+||+||||+|||++|+++|+.+...
T Consensus 8 ~~~~~~l~~~i~~-----------~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 8 RPDFEKLVASYQA-----------G-RGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHHHHHHHHHHHT-----------T-CCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHc-----------C-CcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4555566655543 2 445689999999999999999999987643
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.60 E-value=0.0059 Score=56.99 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=43.7
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCC-CCCCceEeecchhHHHHHHHHHHHhhh----CCeEEEe
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLS-PASQAILLSGPAELYQQMLAKALAHFF----EAKLLLL 135 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~-~~~~~ILLsGP~e~yqe~LaKALA~~f----~a~LL~l 135 (613)
...||++|-.. ++..+..+..+ .- |..++. ...+.|+|+||++.++++|+|++|+.+ |...+.+
T Consensus 5 ~~~~f~~~~~~-~~~~~~~~~~~-~~---------~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 5 WNANLDTYHPK-NVSQNRALLTI-RV---------FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp TTCCSSSCCCC-SHHHHHHHHHH-HH---------HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhCccccccCC-CHHHHHHHHHH-HH---------HHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 35689998543 34444443332 21 222222 125679999999999999999999987 5555555
Q ss_pred ecccch
Q 007208 136 DVTDFS 141 (613)
Q Consensus 136 D~~d~~ 141 (613)
+..++.
T Consensus 74 ~~~~~~ 79 (180)
T 3ec2_A 74 DTKDLI 79 (180)
T ss_dssp EHHHHH
T ss_pred EHHHHH
Confidence 555544
No 176
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.59 E-value=0.00092 Score=62.80 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=27.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.-|+|.||||+|||++|+.+|..++++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 346899999999999999999999999988
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.54 E-value=0.001 Score=65.68 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.4
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+..++-|+|.||||+||++.|+.||..+|++.|
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 344567889999999999999999999999988
No 178
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.54 E-value=0.0091 Score=60.69 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEEccchhhhhh-hhHHHHHHHHHHHhhcC-cEEEEeeeeccCCCCc---cccchHhhccCC
Q 007208 250 IQSIYRVLCYVSKTSPIVVYLRDVDKLIFK-SQRTYNLFQKMMKKLLA-SVLILGSRIVDLSNDQ---REVDGRVTALFP 324 (613)
Q Consensus 250 lqaL~evl~s~s~~~P~IL~idDiD~~l~~-s~r~~~~l~~~l~~l~g-~VlIiGS~~~ds~~~~---~~v~~~l~~lF~ 324 (613)
++.+++.+.+..+ .|+||+|||++.+... +.++...+..+++.... .++++|+.... ..+. ......+..++.
T Consensus 124 ~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~-l~~~l~~~~~~~~l~~r~~ 201 (357)
T 2fna_A 124 FANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGL-LYDYLRVEDPESPLFGRAF 201 (357)
T ss_dssp HHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHH-HHHHTTTTCTTSTTTTCCC
T ss_pred HHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHH-HHHHHhccCCCCccccCcc
Confidence 3455565555544 5999999999996542 34566667767766533 23455542110 0000 011111233445
Q ss_pred ceEEeCCCChHHHHHHHHHHHH
Q 007208 325 YNIEIRPPEDENHLVSWKSQLE 346 (613)
Q Consensus 325 ~~IeI~~P~ee~Rl~Ilk~~L~ 346 (613)
..+++++.+.++-.++++..+.
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHH
Confidence 7899999999999888877654
No 179
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.49 E-value=0.0012 Score=64.78 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=27.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
.-|+|.||||+|||++|+.+|..++++++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 469999999999999999999999999883
No 180
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.49 E-value=0.00097 Score=64.98 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
+.-|+|.||||+|||++|+.+|..++++++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 4568999999999999999999999999883
No 181
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.45 E-value=0.0015 Score=62.32 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=27.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++-|+|.||||+|||++|+.++..+|++++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 346899999999999999999999999988
No 182
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.45 E-value=0.0012 Score=62.22 Aligned_cols=29 Identities=31% Similarity=0.482 Sum_probs=27.1
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-|+|.||||+|||++|+.+|..++++++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 45889999999999999999999999887
No 183
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.41 E-value=0.0016 Score=60.02 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+...++|+||+|+|||+|+++++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999987
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.29 E-value=0.0016 Score=64.57 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=28.4
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++.-|+|.||||+|||++|+.++..+|++++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4567999999999999999999999999988
No 185
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.28 E-value=0.0016 Score=60.36 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=26.6
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-+.|.||||+|||++++.++..+|.+++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 45889999999999999999999999888
No 186
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.28 E-value=0.0032 Score=64.34 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh--CCcee
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL--GQASL 589 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~--g~~fi 589 (613)
.+.-|+|.||||+|||++|+.++.++ +..+|
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~I 64 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 64 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 34568899999999999999999988 44444
No 187
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.28 E-value=0.0016 Score=61.90 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=27.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++-|+|.||||+|||++|+.+|..+|++++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 345889999999999999999999999887
No 188
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.27 E-value=0.001 Score=69.76 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=26.1
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
|+.+.+.++|+||||||||+||.++|.+.|.+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~ 150 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGK 150 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCC
Confidence 45555668999999999999999999875544
No 189
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.20 E-value=0.0022 Score=61.26 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=27.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
..-+.|.||||+|||+++++++..+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 455889999999999999999999998877
No 190
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.15 E-value=0.0026 Score=66.58 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=38.1
Q ss_pred cccccccHHHHHHHHHHH-HCcCCChhhhhcCCCCCCCceee--ecCCCCCchhhhhhhHHhh
Q 007208 525 FADIGALEEIKESLQELV-MLPLRRPDLFKGGLLKPCRGILL--FGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 525 ~ddIgGl~~vk~~l~e~v-~~pl~~pe~~~~~~i~~~~giLL--~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++.|-++..+.|.+.+ .... ... -..+..+++ +||||+|||++|++++.++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~------~~~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLL------SGA-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHH------TSS-CBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHhHHHh------cCC-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 357788888888887776 4211 110 012457899 9999999999999999886
No 191
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.10 E-value=0.0021 Score=60.32 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=26.6
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.+..-+.|.||||+|||++++++|...+.+.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i 38 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKV 38 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeE
Confidence 344456889999999999999999998766643
No 192
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.04 E-value=0.0035 Score=66.44 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=26.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
..++|.||||+|||++++++|..++.+|+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~ 53 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYH 53 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 35899999999999999999999999984
No 193
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.90 E-value=0.0036 Score=61.72 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=26.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.-+.|.||||+|||++++.||..+|+..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456889999999999999999999998765
No 194
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.87 E-value=0.0029 Score=60.23 Aligned_cols=30 Identities=30% Similarity=0.197 Sum_probs=25.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.-|.|.|+||+|||++|+.+|..++.+++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 455889999999999999999998765443
No 195
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=95.85 E-value=0.0073 Score=50.15 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCchhhhhhcccCcccchhhHHHHHHHHHHhhhhcCCCcccCCCc
Q 007208 335 ENHLVSWKSQLEEDMKMMQAKDNRNHIMEVLSANDLDCDDLDSINVADTMVLGNYIEEIVVSAVSYHLMNNEDTDYRNGK 414 (613)
Q Consensus 335 e~Rl~Ilk~~L~~d~k~~~~~~N~~~I~~vL~~~dl~c~dLa~l~~~d~~~~~~~ie~iV~~A~s~~l~~~~~~~~~~~~ 414 (613)
++|.+||+.++.. + -...+++...|+..|.+ |++++|..++..|.-.++.+. .
T Consensus 1 ~~R~~Il~~~l~~-~---------------~~~~~vdl~~lA~~t~G---~SGADi~~l~~eAa~~ai~~~--------~ 53 (82)
T 2dzn_B 1 MERRLIFGTIASK-M---------------SLAPEADLDSLIIRNDS---LSGAVIAAIMQEAGLRAVRKN--------R 53 (82)
T ss_dssp --------------C---------------EECTTCCSTTTTTSSCC---CCHHHHHHHHHHHHHHHHHTT--------C
T ss_pred CHHHHHHHHHHcC-C---------------CCCCcCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc--------c
Confidence 5799999988632 1 12346777888888887 999999999999998888753 2
Q ss_pred eeechhhHHhhhhhh
Q 007208 415 LIISSKSLSHGLSIF 429 (613)
Q Consensus 415 l~is~~sl~~al~~~ 429 (613)
..|+.+||..|+...
T Consensus 54 ~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 54 YVILQSDLEEAYATQ 68 (82)
T ss_dssp SEECHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHH
Confidence 359999999999754
No 196
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.67 E-value=0.053 Score=54.91 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCEEEEEccchhhhh----hhhHHHHHHHHHHHhhcC-cEEEEeeeeccCCCCc---cccchHhhccCCceEEeCCCChH
Q 007208 264 SPIVVYLRDVDKLIF----KSQRTYNLFQKMMKKLLA-SVLILGSRIVDLSNDQ---REVDGRVTALFPYNIEIRPPEDE 335 (613)
Q Consensus 264 ~P~IL~idDiD~~l~----~s~r~~~~l~~~l~~l~g-~VlIiGS~~~ds~~~~---~~v~~~l~~lF~~~IeI~~P~ee 335 (613)
.|.||+|||++.+.. .+..+...|+.+++..+. .++++|+.... ..+. ......+..++...+++.+-+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~-l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGL-LHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHH-HHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHH-HHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 599999999999654 245677778888777543 24555542110 0000 01111233345678999999999
Q ss_pred HHHHHHHHHH
Q 007208 336 NHLVSWKSQL 345 (613)
Q Consensus 336 ~Rl~Ilk~~L 345 (613)
+-.++++..+
T Consensus 207 e~~~~l~~~~ 216 (350)
T 2qen_A 207 TSVEFLKRGF 216 (350)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 197
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.64 E-value=0.0042 Score=61.85 Aligned_cols=30 Identities=33% Similarity=0.296 Sum_probs=25.7
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
..+.-|+|.||||+|||++|+.++..++.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~ 59 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGN 59 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 345668999999999999999999998744
No 198
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.63 E-value=0.0032 Score=59.94 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++-|.|.|+||+|||++|+.+|..++.+++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 455889999999999999999998876654
No 199
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.59 E-value=0.0052 Score=57.91 Aligned_cols=29 Identities=28% Similarity=0.139 Sum_probs=26.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.-|.|.|++|+|||++|+.+|.. |++++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 345889999999999999999998 99998
No 200
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.59 E-value=0.0054 Score=61.66 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=27.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-|.|.||||+|||++++.+|..+|++|+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 46899999999999999999999999998
No 201
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.58 E-value=0.0053 Score=61.28 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=27.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.-|.+.||||+|||++|+.||..+|++++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 345889999999999999999999999987
No 202
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.39 E-value=0.0063 Score=58.65 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=26.6
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-|.|.|++|||||++|+.+|..+|++++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 34778999999999999999999999998
No 203
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.23 E-value=0.0089 Score=58.59 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=27.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
..-|.|.||+|+|||++++.+|..+|++++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 345889999999999999999999999987
No 204
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.16 E-value=0.0098 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++.-|.|.||+|||||++++++|..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34557899999999999999999988
No 205
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.09 E-value=0.021 Score=57.96 Aligned_cols=49 Identities=18% Similarity=0.064 Sum_probs=37.1
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
..+.+.|-++..+.|.+ +.. ..++++||+|+|||++++.++.+.+.+++
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~ 59 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYI 59 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 44567777777777665 311 36899999999999999999998876544
No 206
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.09 E-value=0.017 Score=58.64 Aligned_cols=47 Identities=26% Similarity=0.171 Sum_probs=37.7
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.-+.+.|-++..+.|.+.+.. + +.++++||+|+|||++++.++.+.+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 345677888888888776542 1 4789999999999999999999876
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.04 E-value=0.011 Score=58.95 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=26.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-|.|.||+|+|||++++.+|..+|++++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 35779999999999999999999998887
No 208
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.95 E-value=0.0077 Score=57.48 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=25.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh-CCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL-GQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~-g~~fi 589 (613)
..-|.+.||||+|||++|+.++..+ +++++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 3447789999999999999999987 77766
No 209
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.95 E-value=0.0074 Score=76.23 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.|+.+.++++||||||||||+||.++|.++...
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 468889999999999999999999999886543
No 210
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.95 E-value=0.011 Score=56.39 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+++-|+|.||||+|||++++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456688999999999999999999874
No 211
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.91 E-value=0.01 Score=63.80 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.8
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+.-|+|.||||+|||++|+.++..+++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3456889999999999999999999998887
No 212
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.81 E-value=0.017 Score=55.01 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=28.1
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++.+..-++++||||+|||+++..+|...+.+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~ 49 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVA 49 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEE
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 5677677899999999999999999985555554
No 213
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.74 E-value=0.01 Score=56.61 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=24.1
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++.+..-++++||||+|||++++.+|...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45666678899999999999999999653
No 214
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.67 E-value=0.013 Score=59.56 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=25.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-|.|.|+||+|||++|+.++ ++|+++|
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~i 103 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYII 103 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence 458899999999999999999 6899887
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.61 E-value=0.024 Score=53.59 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=55.8
Q ss_pred HHHHHHHcccCCCCcccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHh
Q 007208 47 MEKELLRQIVDGRESNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAH 126 (613)
Q Consensus 47 ~e~~l~~~vv~~~~i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~ 126 (613)
++..++..-++.+--..||++|-+. +.+.+.. ...+...++... .. ..++.|+|+||++.++++||+|+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~-~~~~~~~~~~~~-----~~--~~~~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 6 QESLIQSMFMPREILRASLSDVDLN-DDGRIKA-IRFAERFVAEYE-----PG--KKMKGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp HHHHEEEESSCGGGGCCCTTSSCCS-SHHHHHH-HHHHHHHHHHCC-----SS--CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHcCCHhhccCC-ChhHHHH-HHHHHHHHHHhh-----hc--cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4444555556655567799998765 2232222 222222222111 00 0236799999999999999999999
Q ss_pred hh---CCeEEEeecccchhhh
Q 007208 127 FF---EAKLLLLDVTDFSLKI 144 (613)
Q Consensus 127 ~f---~a~LL~lD~~d~~~~~ 144 (613)
++ +.+++.++..++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 77 ELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp HHHTTTCCEEEEEHHHHHHHH
T ss_pred HHHHcCCeEEEEEhHHHHHHH
Confidence 88 6778888877765443
No 216
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.60 E-value=0.013 Score=58.11 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=25.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCce
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQAS 588 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~f 588 (613)
.-|.+.||||+|||++|+.+|..+|+++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 4588999999999999999999999883
No 217
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.53 E-value=0.015 Score=56.31 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=25.1
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.++.+..-++|+||||+|||++++.+|..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35666677899999999999999999985
No 218
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.46 E-value=0.13 Score=47.10 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=27.4
Q ss_pred CCCceEeecchhHHHHHHHHHHHhhh---CCeEEEeec
Q 007208 103 ASQAILLSGPAELYQQMLAKALAHFF---EAKLLLLDV 137 (613)
Q Consensus 103 ~~~~ILLsGP~e~yqe~LaKALA~~f---~a~LL~lD~ 137 (613)
..+.++|.||.+.+++.|++++|++. |.+.+.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 45678999999999999999999987 444444443
No 219
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.23 E-value=0.019 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..-|+|.|+||+|||++++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999999998875
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.23 E-value=0.018 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhH
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLP 581 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA 581 (613)
++.+..-+.|.||+|+|||+|+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56666678999999999999999988
No 221
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.18 E-value=0.019 Score=57.17 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=26.4
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCceee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASLM 590 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi~ 590 (613)
.+-|.||||+|||++|+.||..+|++.|.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 45678999999999999999999999993
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.18 E-value=0.015 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=22.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+.-|+|.|+||+|||++++.++..++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45588999999999999999998765
No 223
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.05 E-value=0.28 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.6
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCC
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEA 130 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a 130 (613)
..+||.||+++++++|||+||+.+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 47999999999999999999998853
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.00 E-value=0.03 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..-+.|.||+|+|||++++.++....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578899999999999999998875
No 225
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.99 E-value=0.018 Score=55.60 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.0
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+..-++++||||+|||++|..+|..
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46666677899999999999998888754
No 226
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.96 E-value=0.057 Score=51.46 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=24.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
+.-+.+.||+|+|||++++.++..+ +.+++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 3457789999999999999999865 55544
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.94 E-value=0.016 Score=60.88 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=26.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+-|+|.||+|+|||+||..+|..++..+|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiI 69 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVI 69 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEE
Confidence 35889999999999999999999998777
No 228
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.86 E-value=0.048 Score=53.64 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=24.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC--Ccee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG--QASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g--~~fi 589 (613)
..-|.|.||||+|||++++.++..++ .+++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 34477899999999999999999986 4554
No 229
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.85 E-value=0.024 Score=55.96 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=26.6
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
-|.+.|++|||||++|+.+|..+|++|+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 4778999999999999999999999998
No 230
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.79 E-value=0.02 Score=54.75 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++.+..-+.|.||+|+|||++++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666668899999999999999999854
No 231
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.75 E-value=0.025 Score=55.34 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.++|+|.||+|+|||++|..+|...+ .+|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iI 62 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLI 62 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEE
Confidence 46899999999999999999998866 666
No 232
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.72 E-value=0.028 Score=53.01 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.2
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.-+.|.||+|+|||++++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 447789999999999999999875
No 233
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.67 E-value=0.05 Score=58.87 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.0
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998776
No 234
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.34 E-value=0.03 Score=58.27 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=26.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
++-+++.||+|+|||+||..+|...+..+|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 455888999999999999999999988776
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.31 E-value=0.027 Score=59.54 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-++++||||+|||+||..+|..+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467777778999999999999999998774
No 236
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.29 E-value=0.034 Score=53.69 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+..-++++|+||+|||++|..+|..
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46777777999999999999998876543
No 237
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.19 E-value=0.03 Score=58.92 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=26.1
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+-|++.||+|+|||++|+.||..++..+|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~ii 36 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEII 36 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCcee
Confidence 45899999999999999999999987666
No 238
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.18 E-value=0.1 Score=58.97 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhH
Q 007208 529 GALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLP 581 (613)
Q Consensus 529 gGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA 581 (613)
..-+.+++.+...+.. . .-.|+.||||||||+++..+.
T Consensus 189 ~LN~~Q~~AV~~al~~-------------~--~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ-------------K--ELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp TCCHHHHHHHHHHHHC-------------S--SEEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC-------------C--CceEEECCCCCCHHHHHHHHH
Confidence 3456777777765532 1 125889999999997555444
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.16 E-value=0.042 Score=52.64 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=22.8
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+..-+.+.||+|+|||+|+++|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334577899999999999999998874
No 240
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.03 E-value=0.035 Score=58.34 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+.+-++++||||+|||++|..+|..+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777779999999999999999988654
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.02 E-value=0.039 Score=56.95 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=25.9
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-++++||||+|||++|..+|..+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 366777778999999999999999999875
No 242
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.01 E-value=0.031 Score=56.09 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=23.8
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++.+..-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555668999999999999999988643
No 243
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.00 E-value=0.041 Score=55.57 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++.+..-++|.||||+|||++++.+|...
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356666678899999999999999988764
No 244
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.89 E-value=0.088 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=18.4
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.-|.|.||+|+|||++++.++..+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347789999999999999999887
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.87 E-value=0.053 Score=56.60 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=25.5
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-++++||||+|||++|..+|..+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 366666668899999999999999999874
No 246
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.77 E-value=0.046 Score=57.71 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+.+-++++||||+|||++|..+|.++
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 367777779999999999999999988764
No 247
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.67 E-value=0.036 Score=55.13 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh-CCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL-GQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~-g~~fi 589 (613)
++-|.|.|++|+|||++|+.+|..+ ++.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3458899999999999999999998 55554
No 248
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.61 E-value=0.046 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.177 Sum_probs=23.1
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
-+-|.||+|+|||++++.|+..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 36789999999999999999988865
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.47 E-value=0.079 Score=54.54 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=22.8
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++.-+.|.||+|+|||++++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445568899999999999999999764
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.38 E-value=0.079 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+-+.|.||+|+|||+|+++++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578899999999999999998764
No 251
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.35 E-value=0.033 Score=61.68 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.9
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.-|+|.|+||+|||++|+.+|..+++.++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 45889999999999999999999865553
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.33 E-value=0.05 Score=55.81 Aligned_cols=30 Identities=23% Similarity=0.055 Sum_probs=25.1
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-++++||||+|||++|..+|..+
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 366666678999999999999999998763
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.30 E-value=0.055 Score=51.79 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||+|+|||+++++|+...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 333457789999999999999999876
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.22 E-value=0.056 Score=52.47 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+..-+.|.||+|+|||+|++.|+...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3444557899999999999999999876
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.21 E-value=0.085 Score=54.49 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++-+++.||+|+|||++++.+|..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 445668899999999999999998764
No 256
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.20 E-value=0.046 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.6
Q ss_pred CCceeeecCCCCCchhhhhhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPL 580 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAi 580 (613)
..-+.|.||+|+|||++++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 344789999999999999953
No 257
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=92.20 E-value=2.6 Score=46.30 Aligned_cols=154 Identities=9% Similarity=0.028 Sum_probs=77.0
Q ss_pred CEEEEEccchhhhhhhhHHHHHHHHHHH---------hhcCcEEEEeeeeccCCCC------ccccchHhhccCCc-eEE
Q 007208 265 PIVVYLRDVDKLIFKSQRTYNLFQKMMK---------KLLASVLILGSRIVDLSND------QREVDGRVTALFPY-NIE 328 (613)
Q Consensus 265 P~IL~idDiD~~l~~s~r~~~~l~~~l~---------~l~g~VlIiGS~~~ds~~~------~~~v~~~l~~lF~~-~Ie 328 (613)
--|+||||++++ . .+....|.+.|+ .++.+..|++++..-...+ .-.+++.+.++|+- .+.
T Consensus 301 gGvl~lDEIn~~-~--~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~ 377 (506)
T 3f8t_A 301 GGILAVDHLEGA-P--EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFL 377 (506)
T ss_dssp TSEEEEECCTTC-C--HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEET
T ss_pred CCeeehHhhhhC-C--HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEe
Confidence 368999999994 2 333444555555 3556666666543211111 12688999999955 455
Q ss_pred eCCCChHHHHH---------HHHHHHHHHH-HH--h-hhhhhhhHHHHHhh-cCCCCchhhh-hhcccCcccchhhHHHH
Q 007208 329 IRPPEDENHLV---------SWKSQLEEDM-KM--M-QAKDNRNHIMEVLS-ANDLDCDDLD-SINVADTMVLGNYIEEI 393 (613)
Q Consensus 329 I~~P~ee~Rl~---------Ilk~~L~~d~-k~--~-~~~~N~~~I~~vL~-~~dl~c~dLa-~l~~~d~~~~~~~ie~i 393 (613)
+.-|+.+...+ .++.++..-. .. . ..+.-.+.|..... .+. . .+-. .........+.+.++.+
T Consensus 378 ~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~-~-~~~~~~~~~~~~giSpR~leaL 455 (506)
T 3f8t_A 378 GVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRRE-E-VEERLGMGLPTLPVTRRQLESV 455 (506)
T ss_dssp TC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHH-H-HHHHHHTTCCCCCCCHHHHHHH
T ss_pred cCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhc-C-cccccccccccccccHHHHHHH
Confidence 66666554321 1222211100 00 0 00111112221100 000 0 0000 00001234899999999
Q ss_pred HHHHHHhhhhcCCCcccCCCceeechhhHHhhhhhhhc
Q 007208 394 VVSAVSYHLMNNEDTDYRNGKLIISSKSLSHGLSIFQE 431 (613)
Q Consensus 394 V~~A~s~~l~~~~~~~~~~~~l~is~~sl~~al~~~q~ 431 (613)
+.-|-.++.++..+ .++.+|...|+.+|+.
T Consensus 456 iRlA~A~A~L~gR~--------~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 456 ERLAKAHARMRLSD--------DVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHTTCS--------EECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcC--------CCCHHHHHHHHHHHHH
Confidence 99999999885543 4888999999999874
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.15 E-value=0.054 Score=54.52 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+++.||+|+|||++.++++...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344457899999999999999999864
No 259
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.05 E-value=0.03 Score=70.82 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=45.0
Q ss_pred CccccccccccHHHHHHHHHH-----------------HHCcCCChhhhhcC---CCCCCCceeeecCCCCCchhhhhhh
Q 007208 521 ISVTFADIGALEEIKESLQEL-----------------VMLPLRRPDLFKGG---LLKPCRGILLFGPPGLGKQCWPRPL 580 (613)
Q Consensus 521 ~~v~~ddIgGl~~vk~~l~e~-----------------v~~pl~~pe~~~~~---~i~~~~giLL~GPPGtGKT~lAkAi 580 (613)
|+++|++-..+..+.+.|... ..+|...+++..-. |+.+...++++|+||+|||+||..+
T Consensus 673 ~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalql 752 (2050)
T 3cmu_A 673 SAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 752 (2050)
T ss_dssp -CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHH
Confidence 467787644444444444221 23455667666543 6888999999999999999999999
Q ss_pred HHhhC
Q 007208 581 PKRLG 585 (613)
Q Consensus 581 A~e~g 585 (613)
|..+.
T Consensus 753 A~~~a 757 (2050)
T 3cmu_A 753 IAAAQ 757 (2050)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.04 E-value=0.049 Score=57.72 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=25.5
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+.+-++++||||+|||++|..+|..+
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 366777779999999999999999888764
No 261
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.90 E-value=0.048 Score=57.18 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=26.0
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++.+..-+.|+||||+|||+|++.+|...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 466666778899999999999999999876
No 262
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.76 E-value=0.1 Score=55.18 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.++.-+.|.||.|+|||++++.||..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3445568899999999999999999864
No 263
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.76 E-value=0.18 Score=54.40 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=34.6
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCc-eeeecCCCCCchhhhhhhHHhhC
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRG-ILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~g-iLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..++++++-....+..+.+++ ..+.+ +++.||+|+|||++.++++....
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---------------~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---------------KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---------------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---------------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456777776665555555442 11233 68899999999999999998864
No 264
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.74 E-value=0.071 Score=60.46 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=26.6
Q ss_pred CceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
.-|+|.|+||+|||++|+++|..+ |.+++
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v 84 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 458899999999999999999998 98886
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.64 E-value=0.075 Score=49.45 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444457899999999999999999986
No 266
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.47 E-value=0.058 Score=60.45 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.-+++.||||||||+++++++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457889999999999999998754
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.42 E-value=0.059 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=15.9
Q ss_pred CCCceeeecCCCCCchhhhhhhH-Hhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLP-KRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA-~e~ 584 (613)
+..-+.|.||+|+|||++++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 33457789999999999999999 664
No 268
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.21 E-value=0.16 Score=51.95 Aligned_cols=27 Identities=26% Similarity=0.189 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+.-|.+.||+|+|||++|+.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344577899999999999999998875
No 269
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.16 E-value=0.16 Score=53.87 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=27.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC---CceeeccCC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG---QASLMSPCL 594 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g---~~fi~~v~~ 594 (613)
..+|++|++|||||++|++|..... .||+...++
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~ 197 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVA 197 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETT
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecC
Confidence 4589999999999999999998764 678854444
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.14 E-value=0.21 Score=51.15 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++-++|.||+|+|||+++..+|..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999998654
No 271
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.11 E-value=0.099 Score=54.10 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+.+..-+.|.||+|+|||+|++.|+...
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45666678899999999999999999876
No 272
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.06 E-value=0.063 Score=56.83 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=23.1
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+..-+++.||+|+|||++.++++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444558899999999999999999864
No 273
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.05 E-value=0.098 Score=53.84 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-+++.|+||+|||++|..+|...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467777779999999999999999888664
No 274
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.02 E-value=0.057 Score=58.70 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.3
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
+.-|+|.|.||+|||++++.+|..++.+++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 346899999999999999999998765543
No 275
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.90 E-value=0.095 Score=56.19 Aligned_cols=29 Identities=24% Similarity=0.153 Sum_probs=24.4
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+..-++|+||||||||+|+..+|..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 46777777999999999999999977644
No 276
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.81 E-value=0.17 Score=55.92 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=35.8
Q ss_pred ccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 526 ADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 526 ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..+.|-+...+.|.+.+... -...+-++++||+|.|||+||+.++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 46788898888888876531 112356889999999999999998753
No 277
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.62 E-value=0.095 Score=50.26 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+|+||.||+|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 469999999999999999999874 77776
No 278
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.62 E-value=0.17 Score=46.69 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
....|++.|++|+|||++..++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999998753
No 279
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.60 E-value=0.068 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-+++.||+|+|||++.++++...
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47889999999999999998765
No 280
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.60 E-value=0.13 Score=56.83 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+.-++|.||+|+|||++++.||..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 344558899999999999999999764
No 281
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.44 E-value=0.15 Score=52.36 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=47.5
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcCCCcccccccCCCC-CCCceEeecchhHHHHHHHHHHHhhhC----CeEEEe
Q 007208 61 SNITFDEFPYYLSGQTRALLTSAAYVHLKHTEVSKYTRNLSP-ASQAILLSGPAELYQQMLAKALAHFFE----AKLLLL 135 (613)
Q Consensus 61 i~vsf~~fpYyLse~tk~~L~~~a~~hL~~~~~~k~~~~L~~-~~~~ILLsGP~e~yqe~LaKALA~~f~----a~LL~l 135 (613)
-..||++|-+. ...+.....++.--++ +... ..+.|+|+||++.+++.||+|+|+++. .+.+.+
T Consensus 119 ~~~tfd~f~~~--~~~~~~~~~~~~~~i~---------~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 119 RHIHLSDIDVN--NASRMEAFSAILDFVE---------QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GSCCGGGSCCC--SHHHHHHHHHHHHHHH---------HCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HhCCHhhCcCC--ChHHHHHHHHHHHHHH---------hccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 34799999764 2122222323321122 1111 256799999999999999999999765 777778
Q ss_pred ecccchhhh
Q 007208 136 DVTDFSLKI 144 (613)
Q Consensus 136 D~~d~~~~~ 144 (613)
...+|...+
T Consensus 188 ~~~~l~~~l 196 (308)
T 2qgz_A 188 HFPSFAIDV 196 (308)
T ss_dssp EHHHHHHHH
T ss_pred EHHHHHHHH
Confidence 877776444
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.42 E-value=0.26 Score=51.68 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=27.7
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
.|+.+..-+++.|+||+|||++|..+|... |.+++
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl 78 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA 78 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 367777779999999999999999888763 55543
No 283
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.34 E-value=0.14 Score=55.48 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=21.7
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+++-+++.||+|+|||+++..+|..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35668889999999999999888554
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.30 E-value=0.17 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++.-|++.||||+|||+++..+|..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35678899999999999999888654
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.16 E-value=0.12 Score=50.46 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=22.9
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+..-+.|.||+|+|||+|.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3345577899999999999999998764
No 286
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.11 E-value=0.11 Score=54.41 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=22.4
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+. -++++||||+|||+||-.++.++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 466655 47899999999999987766553
No 287
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.03 E-value=0.11 Score=57.45 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=23.9
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.-|.|.|++|||||++|+++|..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999985
No 288
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.94 E-value=0.11 Score=58.53 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.1
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999987766654
No 289
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.72 E-value=0.15 Score=54.85 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=24.5
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|+.+..-+++.|+||+|||++|..+|..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 36777777899999999999999888765
No 290
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.62 E-value=0.15 Score=55.11 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=25.0
Q ss_pred CCCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 555 GLLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 555 ~~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|+.+..-+++.||||+|||++|..+|...
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777779999999999999999888753
No 291
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.56 E-value=0.19 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.165 Sum_probs=22.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+.-+.+.||+|||||++++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34577899999999999999998875
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.37 E-value=0.17 Score=47.91 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..-+.+.||+|+|||+++++++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999998764
No 293
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.36 E-value=0.16 Score=52.68 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++-+++.||+|+|||+++..+|..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455678899999999999999888764
No 294
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.34 E-value=0.19 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.2
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQ 586 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~ 586 (613)
.-|.|.|++|+|||++++.++..++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34778899999999999999987654
No 295
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.31 E-value=0.16 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.-+.|.||+|+|||++++.+|...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568889999999999999999664
No 296
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.25 E-value=0.16 Score=52.46 Aligned_cols=28 Identities=25% Similarity=0.101 Sum_probs=22.8
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..+.-+.+.||+|+|||+|++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3344477899999999999999998753
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.21 E-value=0.18 Score=46.69 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
.+.|+|.||++.++.+++|+||+.+|+.++-.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 4579999999999999999999999999887664
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.12 E-value=0.16 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.7
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
-+.|.||.|+|||+|.++|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4778999999999999999975
No 299
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.88 E-value=0.18 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++-|++.||||+|||+++..+|..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999865
No 300
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.82 E-value=0.16 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.3
Q ss_pred ceeeecCCCCCchhhhhhhHHhhC
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
-.+++||.|+|||++++||+--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 356899999999999999987653
No 301
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.40 E-value=0.2 Score=49.02 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=25.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
-.|-|.|..|||||++++.++. +|+++|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vi 37 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLV 37 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEE
Confidence 3577999999999999999998 999998
No 302
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.38 E-value=0.17 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.9
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.-+.|.||+|+|||++++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999765
No 303
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.34 E-value=0.32 Score=64.18 Aligned_cols=48 Identities=33% Similarity=0.449 Sum_probs=35.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCceeeccCCCcchHHHHHHHHHHH
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASLMSPCLPSLPNGLVRMRRMFE 609 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi~~v~~~~lge~e~~Ir~IF~ 609 (613)
..|..++||+|||||.+++++|+.+|.+++...++..+ .+..+.++|.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~--d~~~~g~i~~ 651 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF--DLQAMSRIFV 651 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC--CHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC--CHHHHHHHHh
Confidence 35778999999999999999999999999855555432 2234445554
No 304
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.09 E-value=0.17 Score=50.04 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+..-+.|.||.|+|||+|.++|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444557899999999999999999764
No 305
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.98 E-value=0.21 Score=52.09 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=22.6
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++.-+.|.||+|+|||++++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999999764
No 306
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.98 E-value=0.17 Score=49.89 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=22.1
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+.-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 444457899999999999999999654
No 307
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.92 E-value=0.19 Score=56.62 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=19.5
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+-+++.||||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999888776543
No 308
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.91 E-value=0.18 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-+.|.||+|+|||+|.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.84 E-value=0.21 Score=47.21 Aligned_cols=24 Identities=13% Similarity=-0.050 Sum_probs=21.3
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.-+.+.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999998874
No 310
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.83 E-value=0.19 Score=49.95 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+ .-+.|.||.|+|||+|.++|+.-.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 567799999999999999999654
No 311
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.79 E-value=0.21 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.3
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|++.|++|+|||+++.++....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998653
No 312
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.77 E-value=0.15 Score=49.90 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=21.3
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||.|+|||+|.++|+.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33447789999999999999999654
No 313
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.74 E-value=0.27 Score=45.05 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=31.3
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEeecccc
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDF 140 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~ 140 (613)
.-|+|+||++.++.+++|+||+.++..++.+|.-++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 458999999999999999999999998887776444
No 314
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.72 E-value=0.2 Score=46.87 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=21.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.....|++.|++|+|||+|+.++...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 33457999999999999999998754
No 315
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.67 E-value=0.2 Score=56.11 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=25.0
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC----Ccee
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG----QASL 589 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g----~~fi 589 (613)
.-|+|.|+||+|||++|++++..++ .+++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~ 429 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVS 429 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEE
Confidence 4588999999999999999999976 5654
No 316
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.56 E-value=0.19 Score=50.45 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=21.9
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+.-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333447799999999999999999754
No 317
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.52 E-value=0.2 Score=58.30 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.0
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3688999999999987766654
No 318
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.44 E-value=0.34 Score=53.47 Aligned_cols=43 Identities=14% Similarity=-0.025 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHH
Q 007208 530 ALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 530 Gl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
|-++.++.|.+.+... .-...+-|.++|++|.|||+||+.+++
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 7888888888776430 112245688999999999999999996
No 319
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.35 E-value=0.26 Score=46.61 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...|++.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998764
No 320
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.33 E-value=0.38 Score=50.65 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.1
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCc--eeeccCC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQA--SLMSPCL 594 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~--fi~~v~~ 594 (613)
..+|++|++||||+++|+++....+.. |+...++
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~ 188 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCA 188 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESS
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcc
Confidence 459999999999999999999887643 7644443
No 321
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.26 E-value=0.23 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=20.4
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.13 E-value=0.22 Score=43.92 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.|++.|++|+|||+++.++....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999997653
No 323
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.00 E-value=0.24 Score=43.77 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.7
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|++.|+||+|||+|..++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988754
No 324
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.98 E-value=0.21 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||.|||||+|.++||.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33447789999999999999999753
No 325
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.94 E-value=0.21 Score=46.77 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=28.9
Q ss_pred ccccccccHHHHHHHHHHHHCcCCChhhhhcCC---CCCCCceeeecCCCCCchhhhh
Q 007208 524 TFADIGALEEIKESLQELVMLPLRRPDLFKGGL---LKPCRGILLFGPPGLGKQCWPR 578 (613)
Q Consensus 524 ~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~---i~~~~giLL~GPPGtGKT~lAk 578 (613)
+|++++-.+.+.+.+.+. ....|.-++... +...+.+++.+|+|+|||..+-
T Consensus 2 ~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGR---GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHH
Confidence 467776666666666542 122221111100 0112569999999999998643
No 326
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=86.79 E-value=0.24 Score=54.52 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhh-HHhh
Q 007208 528 IGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPL-PKRL 584 (613)
Q Consensus 528 IgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAi-A~e~ 584 (613)
|.|.+++|..|.-.+.-.... ..-.-.+||.|+||| ||++|+++ ++-+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~ 263 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLA 263 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhC
Confidence 568888887776544331111 111125999999999 99999999 6654
No 327
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.77 E-value=0.24 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.7
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.=|.|.||+|+|||++++.++..+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4477899999999999999998763
No 328
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.76 E-value=0.23 Score=46.57 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=22.0
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+....-+.|.|++|+|||+|.++++...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444458899999999999999998543
No 329
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.76 E-value=0.21 Score=49.47 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444457899999999999999999754
No 330
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.58 E-value=0.23 Score=49.79 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+..-+.|.||.|+|||+|.++|+...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444558899999999999999999754
No 331
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.52 E-value=0.25 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.9
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.+..-+.|.||.|+|||+|.++|+.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44445779999999999999999975
No 332
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.52 E-value=0.24 Score=49.96 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.1
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344457799999999999999999754
No 333
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.50 E-value=0.27 Score=43.59 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.4
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 334
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.44 E-value=0.22 Score=52.00 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
..-+.+.||+|+|||+|++.|+......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458899999999999999999887644
No 335
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.43 E-value=0.28 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.089 Sum_probs=18.9
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-++++||||+|||+++..++..+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 35678999999999888777665
No 336
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.42 E-value=0.24 Score=50.06 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+..-+.|.||.|+|||+|.++|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444457899999999999999999764
No 337
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=86.40 E-value=0.3 Score=47.94 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.6
Q ss_pred ceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+++.||+|+|||.+|.+++...+.+++
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~l 137 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTL 137 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEE
Confidence 4899999999999999999988876665
No 338
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.36 E-value=0.24 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..-+.|.||.|||||+|.++||.-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3447789999999999999999653
No 339
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.34 E-value=0.26 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.4
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||.|||||+|.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33447789999999999999999754
No 340
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.30 E-value=0.64 Score=55.16 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=36.5
Q ss_pred ccccccHHHHHHHHHHHHCcCCChhhhhcCCCCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 526 ADIGALEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 526 ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..+.|-++..+.|.+.+... -...+-|.++|++|.|||+||+.++..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 36788899998888877531 122355789999999999999998876
No 341
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.28 E-value=0.25 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||+|||||+|.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 33447789999999999999999653
No 342
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.20 E-value=0.22 Score=48.65 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||.|+|||+|.++|+...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33447789999999999999998754
No 343
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.17 E-value=0.21 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..-+.|.||.|+|||+|.++|+.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3447799999999999999998654
No 344
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.15 E-value=0.26 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||+|||||+|.++||.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 33447789999999999999999754
No 345
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.12 E-value=0.22 Score=48.89 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.4
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334457799999999999999999764
No 346
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.11 E-value=0.3 Score=52.91 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhh---CCcee
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRL---GQASL 589 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~---g~~fi 589 (613)
|+.+..-+++.|+||+|||++|..+|... |.+++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl 229 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVN 229 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEE
Confidence 66777779999999999999998887664 55554
No 347
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.11 E-value=0.24 Score=48.95 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.1
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..-+.|.||.|+|||+|.++|+.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3447799999999999999999754
No 348
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.07 E-value=0.27 Score=54.36 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=22.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
...+++.||+|+|||++.++++....
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35699999999999999999998763
No 349
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=86.06 E-value=0.32 Score=46.35 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=31.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcC---CCCCCCceeeecCCCCCchhhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGG---LLKPCRGILLFGPPGLGKQCWP 577 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~---~i~~~~giLL~GPPGtGKT~lA 577 (613)
..+|++++-.+.+.+.+.+.- ...|.-++.. .+...+.+++.+|+|+|||..+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 356888887777777776542 2222211110 0011256999999999999863
No 350
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.06 E-value=0.29 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.9
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-.|++.|++|+|||+|..++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999988654
No 351
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.05 E-value=0.27 Score=52.20 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=21.8
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|||||+|.++||.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 333447789999999999999999653
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.03 E-value=0.26 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCCceeeecCCCCCchhhhhhhHHh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
+..-+.|.||.|+|||+|.++|+.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344779999999999999999974
No 353
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.03 E-value=0.29 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998754
No 354
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.02 E-value=0.25 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.1
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..-+.|.||.|+|||+|.++|+.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3447899999999999999999754
No 355
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.98 E-value=0.28 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.8
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
-+.+.|+||+|||+|..+++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999864
No 356
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.94 E-value=0.22 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.2
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+.-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334457899999999999999998764
No 357
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.91 E-value=0.27 Score=57.25 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.8
Q ss_pred ceeeecCCCCCchhhhhhhHH
Q 007208 562 GILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~ 582 (613)
-+|+.||||||||+++..++.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 368899999999987665544
No 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.84 E-value=0.31 Score=43.54 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.3
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999998865
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.78 E-value=0.38 Score=44.43 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=28.8
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
+.|+|.||++.++.+++|+||+.+|++++-.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 46999999999999999999999999876555
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.76 E-value=0.27 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..-+.|.||.|||||+|.++||.-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3447789999999999999999653
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.73 E-value=0.31 Score=43.98 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.8
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|..++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999988764
No 362
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.70 E-value=0.27 Score=49.58 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+.-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 333447789999999999999999754
No 363
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.70 E-value=0.27 Score=49.39 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344457799999999999999998654
No 364
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.57 E-value=0.28 Score=49.14 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344457799999999999999999754
No 365
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.53 E-value=0.4 Score=44.10 Aligned_cols=31 Identities=29% Similarity=0.242 Sum_probs=28.0
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
.|+|.||++.++.+++|+||+.+|+.++-.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 6999999999999999999999999876544
No 366
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.53 E-value=0.27 Score=54.16 Aligned_cols=29 Identities=21% Similarity=0.093 Sum_probs=24.3
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++.+..-+++.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55566668899999999999999998654
No 367
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.45 E-value=0.32 Score=43.23 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.2
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 368
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.38 E-value=0.3 Score=44.73 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.7
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.-|+|.|++|+|||+|..+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 369
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.34 E-value=0.32 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 370
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.32 E-value=0.25 Score=53.90 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=25.1
Q ss_pred CCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
|+.+..-+++.|+||+|||++|..+|...
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 66777779999999999999999888765
No 371
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.31 E-value=0.41 Score=45.20 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=30.2
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
.+.|+|.||++.++.+|+|+||+.+|..++-.|.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 4579999999999999999999999999876664
No 372
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.27 E-value=0.44 Score=43.93 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=29.6
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
.+.|+|.||++.++.+++|+||+++|+.++.+|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 456999999999999999999999999887665
No 373
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.19 E-value=0.26 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||.|+|||+|.++|+.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33447799999999999999999764
No 374
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.17 E-value=0.61 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=21.2
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++-+++.||+|+|||+++..+|..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999888665
No 375
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=85.16 E-value=0.59 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.3
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.-|++.|++|+|||+++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458889999999999999999875
No 376
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.14 E-value=0.41 Score=43.16 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|..++...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999998753
No 377
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.12 E-value=0.49 Score=49.32 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=34.2
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
.+.|+|+||...++.+|+++||+++++.++.+|+..+-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 35699999999999999999999999999999987653
No 378
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.11 E-value=0.46 Score=47.12 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=31.2
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCeEEEeeccc
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAKLLLLDVTD 139 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d 139 (613)
-|+|+||++.++.+||++||+++++.++..|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 4889999999999999999999999999988754
No 379
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.07 E-value=0.23 Score=52.25 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhC
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.+..-+++.||.|+|||+++++++....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445689999999999999999998753
No 380
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.07 E-value=0.19 Score=56.11 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhC
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..-+.|.||+|+|||+++++||..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34588999999999999999999875
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.03 E-value=0.36 Score=45.76 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.0
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.-+++.|++|+|||+++.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998753
No 382
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.03 E-value=0.35 Score=42.98 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.8
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|++.|++|+|||+|..++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 383
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.94 E-value=0.27 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||.|+|||+|.++|+...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33447799999999999999999754
No 384
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.90 E-value=0.39 Score=42.91 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|..++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999753
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.88 E-value=0.32 Score=50.50 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=22.2
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..+++.||+|+|||+++++++....
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4688999999999999999998753
No 386
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=84.83 E-value=4.6 Score=42.49 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=35.6
Q ss_pred CCCCCCceEeecchhHHHHHHHHHHHhhhC---CeEEEeecccchh
Q 007208 100 LSPASQAILLSGPAELYQQMLAKALAHFFE---AKLLLLDVTDFSL 142 (613)
Q Consensus 100 L~~~~~~ILLsGP~e~yqe~LaKALA~~f~---a~LL~lD~~d~~~ 142 (613)
++...-.||++|+++.+++++|+++.+... .+|+.+|...++.
T Consensus 156 ~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~ 201 (387)
T 1ny5_A 156 ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR 201 (387)
T ss_dssp HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH
T ss_pred hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH
Confidence 445566799999999999999999988765 7899999877653
No 387
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.80 E-value=0.23 Score=52.29 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=21.8
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|||||+|.++||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 333447789999999999999999653
No 388
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.65 E-value=0.53 Score=44.25 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=28.5
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
+..|+|.||++.++.+++|+||+++|.+++..|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 346999999999999999999999998865554
No 389
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.65 E-value=0.34 Score=43.53 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.2
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999854
No 390
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.64 E-value=0.7 Score=49.91 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
++.-+++.||+|+|||+++..+|..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45668889999999999999888764
No 391
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.64 E-value=0.35 Score=43.61 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.-.|++.|++|+|||+|+.++...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999998754
No 392
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.63 E-value=0.28 Score=49.03 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=21.7
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.|.||.|+|||+|.++|+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33447799999999999999999764
No 393
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.56 E-value=0.37 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|+.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 394
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=84.42 E-value=0.38 Score=43.59 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 395
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.30 E-value=0.39 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999876
No 396
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.24 E-value=0.31 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCCCCCceeeecCCCCCchhhhhhh
Q 007208 556 LLKPCRGILLFGPPGLGKQCWPRPL 580 (613)
Q Consensus 556 ~i~~~~giLL~GPPGtGKT~lAkAi 580 (613)
++.+..-++|.||+|||||+|++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4556667899999999999999994
No 397
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.22 E-value=0.34 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.3
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..-+.|.||.|+|||+|.++|+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3447799999999999999999764
No 398
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.17 E-value=0.35 Score=51.69 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
+.+..-+.|.||.|||||+|.++||.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 344455789999999999999999964
No 399
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=84.11 E-value=0.4 Score=43.09 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.0
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..|++.|++|+|||+|..++....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 400
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.10 E-value=0.41 Score=43.28 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.4
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 401
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=84.08 E-value=0.24 Score=54.28 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.1
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
..++|+||||+|||+|+..++....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 3588999999999999998877643
No 402
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.00 E-value=0.39 Score=43.26 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.6
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998865
No 403
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=83.94 E-value=0.4 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.4
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 404
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.94 E-value=0.54 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=21.2
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.++-|++.|+||+|||+++..+|..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999554
No 405
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=83.93 E-value=0.4 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.6
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-.|++.|+||+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999887653
No 406
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=83.90 E-value=0.38 Score=44.17 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.1
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 407
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.67 E-value=0.45 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.-|.|.||.|+|||++++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34778999999999999999987
No 408
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.62 E-value=0.4 Score=43.66 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.3
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 409
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=83.56 E-value=0.51 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=20.5
Q ss_pred CCCceeeecCCCCCchhhhhhhHH
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
....|++.|++|+|||+|+.++..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 344699999999999999999864
No 410
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.43 E-value=0.46 Score=44.12 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999865
No 411
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=83.36 E-value=0.32 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.5
Q ss_pred CceeeecCCCCCchhhhhhhHHhhC
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
.-|+|.|+||+|||++|+.++..++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4588999999999999999999875
No 412
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=83.22 E-value=0.37 Score=49.24 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.3
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|+|||+|.++|+...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344457899999999999999999764
No 413
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.17 E-value=0.55 Score=43.14 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999764
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.14 E-value=0.23 Score=52.25 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+.|.||.|||||+|.++||.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 333447789999999999999999653
No 415
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.13 E-value=0.46 Score=43.23 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 416
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.11 E-value=0.46 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.3
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 417
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=82.99 E-value=0.56 Score=50.40 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.....++++||||||||+|++.||+..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344569999999999999999888754
No 418
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=82.98 E-value=8 Score=40.41 Aligned_cols=40 Identities=13% Similarity=0.333 Sum_probs=33.7
Q ss_pred CCCCceEeecchhHHHHHHHHHHHhhhCCe--EEEeecccch
Q 007208 102 PASQAILLSGPAELYQQMLAKALAHFFEAK--LLLLDVTDFS 141 (613)
Q Consensus 102 ~~~~~ILLsGP~e~yqe~LaKALA~~f~a~--LL~lD~~d~~ 141 (613)
.....||+.|+++.+++++|+++.++.+.. |+.+|...++
T Consensus 150 ~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~ 191 (368)
T 3dzd_A 150 KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIP 191 (368)
T ss_dssp TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSC
T ss_pred ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCC
Confidence 445569999999999999999999887655 9999987765
No 419
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=82.96 E-value=0.47 Score=43.60 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.6
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 420
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=82.80 E-value=0.48 Score=43.62 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998765
No 421
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=82.77 E-value=0.55 Score=50.80 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
....-+.|+||+|||||+|.+.||......
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 333457899999999999999999987544
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.58 E-value=0.48 Score=43.76 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.2
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-.|++.|++|+|||+|..++....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 423
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.56 E-value=0.41 Score=44.86 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=15.4
Q ss_pred CceeeecCCCCCchhhhh
Q 007208 561 RGILLFGPPGLGKQCWPR 578 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAk 578 (613)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 424
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=82.55 E-value=0.5 Score=43.29 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999765
No 425
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=82.51 E-value=0.47 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|+||+|||+|..++...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 426
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=82.49 E-value=0.5 Score=42.72 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.-.|++.|++|+|||+|..++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999988754
No 427
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=82.48 E-value=0.41 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.8
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..|++.|++|+|||+|..++...-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 359999999999999999987653
No 428
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.47 E-value=0.46 Score=43.12 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.2
Q ss_pred CCceeeecCCCCCchhhhhhhHH
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~ 582 (613)
...|++.|++|+|||+|..++..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999998873
No 429
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.33 E-value=0.73 Score=47.88 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=34.5
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
++-|+++||...++..||++||+.+++.++..|+..+-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 45688999999999999999999999999999997663
No 430
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=82.32 E-value=0.53 Score=43.62 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=19.8
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999877754
No 431
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=82.32 E-value=0.49 Score=49.58 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.5
Q ss_pred CceeeecCCCCCchhhhhhhHHhhCCc
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRLGQA 587 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~g~~ 587 (613)
.-+.|.||+|+|||+|.+.|+......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 447899999999999999999987644
No 432
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=82.31 E-value=0.42 Score=43.47 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=10.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|..++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999988744
No 433
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=82.27 E-value=0.47 Score=49.26 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+|+||.||+|+|||++|.++.. .|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 47999999999999999998865 577776
No 434
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.20 E-value=0.55 Score=47.87 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+++-+.+.||+|+|||++++.+|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567788999999999999998764
No 435
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=82.18 E-value=0.53 Score=43.58 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.8
Q ss_pred ceeeecCCCCCchhhhhhhHHh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e 583 (613)
.|++.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5999999999999999988764
No 436
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=82.13 E-value=0.5 Score=49.04 Aligned_cols=29 Identities=34% Similarity=0.499 Sum_probs=25.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHhhCCcee
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRLGQASL 589 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~g~~fi 589 (613)
.+|+||.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 478999999999999999999875 66666
No 437
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=82.11 E-value=0.52 Score=43.63 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.3
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998754
No 438
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.00 E-value=0.55 Score=50.76 Aligned_cols=27 Identities=33% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++-|++.|++|+|||+++..+|..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346778899999999999988888654
No 439
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=81.99 E-value=0.59 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+++.+|+|+|||+++..++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999888777653
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=81.93 E-value=0.5 Score=43.11 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.2
Q ss_pred eeeecCCCCCchhhhhhhHHhh
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+++||.|+|||++..||.--+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998654
No 441
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=81.93 E-value=0.5 Score=43.94 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.1
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...|++.|++|+|||+|+.++....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999887653
No 442
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=81.93 E-value=0.54 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.1
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.-|.+.|+||+|||+++.+++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999998764
No 443
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=81.88 E-value=0.42 Score=43.30 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=21.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.-.|++.|++|+|||+|...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998865
No 444
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=81.85 E-value=0.64 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..-+.|.||||+|||++.++++..
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 344778999999999999999865
No 445
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=81.84 E-value=0.55 Score=43.60 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.4
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...|++.|++|+|||+|..++....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3569999999999999999987653
No 446
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=81.79 E-value=0.48 Score=43.33 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.3
Q ss_pred CCceeeecCCCCCchhhhhhhHHhh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
...|++.|++|+|||+|..++....
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999988543
No 447
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=81.79 E-value=0.53 Score=43.63 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.4
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999764
No 448
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=81.75 E-value=0.57 Score=51.04 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCCceeeecCCCCCchhhhhhhHHhh
Q 007208 559 PCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 559 ~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+..-+.+.||.|+|||+|++.|+.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33458899999999999999998763
No 449
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=81.61 E-value=0.56 Score=43.27 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.4
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 450
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=81.53 E-value=0.58 Score=43.05 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998754
No 451
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=81.45 E-value=0.7 Score=44.41 Aligned_cols=54 Identities=20% Similarity=0.119 Sum_probs=32.9
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcC---CCCCCCceeeecCCCCCchhhhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGG---LLKPCRGILLFGPPGLGKQCWPR 578 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~---~i~~~~giLL~GPPGtGKT~lAk 578 (613)
..+|++++-.+.+.+.+.+.- ...|.-++.. .+...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 456999987777777776531 2222222110 00113569999999999998543
No 452
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=81.39 E-value=0.58 Score=43.21 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.2
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999998754
No 453
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.34 E-value=0.58 Score=43.23 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999865
No 454
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.34 E-value=0.58 Score=43.67 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|+||+|||+|..++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998854
No 455
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.20 E-value=0.78 Score=41.32 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=29.2
Q ss_pred ceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 106 AILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 106 ~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
-|+|.||++.++.+++|+||+.+|..++-.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 48999999999999999999999999877774
No 456
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.05 E-value=0.8 Score=41.53 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=28.5
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
+.|+|.||++.++.+++|.||+.+|++++-.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 46999999999999999999999999876554
No 457
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=81.00 E-value=0.57 Score=43.74 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.2
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998754
No 458
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=81.00 E-value=0.48 Score=43.63 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999865
No 459
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=80.74 E-value=0.59 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.0
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|+.++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346999999999999999999865
No 460
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.66 E-value=0.38 Score=46.64 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=32.2
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcCC---CCCCCceeeecCCCCCchhhhhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGGL---LKPCRGILLFGPPGLGKQCWPRP 579 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~---i~~~~giLL~GPPGtGKT~lAkA 579 (613)
..+|++++-.+.+.+.+.+.- ...|.-++... +...+.+++.+|+|+|||+.+-.
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 456888887777777665432 22222111100 01124699999999999976443
No 461
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.60 E-value=0.61 Score=42.90 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
.-.|++.|++|+|||+|..++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346999999999999999999764
No 462
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.51 E-value=0.89 Score=44.62 Aligned_cols=29 Identities=17% Similarity=0.492 Sum_probs=25.6
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeE
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKL 132 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~L 132 (613)
...||++||++.+++++|.|||++++-+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 45699999999999999999999976654
No 463
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.50 E-value=0.87 Score=43.48 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=28.8
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
...|+|.||++.++.+++|.||++++..++..|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 36 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATG 36 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEehh
Confidence 457999999999999999999999998766554
No 464
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.49 E-value=1.1 Score=42.20 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=29.6
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
...|+|.||++.++.+|+|.||+.+|+.++-.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCc
Confidence 4579999999999999999999999988766553
No 465
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=80.39 E-value=0.61 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|+.++...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 466
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.31 E-value=0.38 Score=49.62 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=23.5
Q ss_pred CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 557 LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 557 i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
+.+..-+.|.||.|+|||+|++.|+...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4555668899999999999999999754
No 467
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=80.22 E-value=0.8 Score=46.46 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=25.2
Q ss_pred CCCCceEeecchhHHHHHHHHHHHhhhCC
Q 007208 102 PASQAILLSGPAELYQQMLAKALAHFFEA 130 (613)
Q Consensus 102 ~~~~~ILLsGP~e~yqe~LaKALA~~f~a 130 (613)
+...+|||+||+..++.+||+|||++++-
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34557999999999999999999998764
No 468
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=80.21 E-value=0.57 Score=44.46 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=34.2
Q ss_pred cccccccccHHHHHHHHHHHHCcCCChhhhhcCC---CCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 523 VTFADIGALEEIKESLQELVMLPLRRPDLFKGGL---LKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 523 v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~~---i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+|++++-.+.+.+.+.+. ....|.-++... +...+.+++.+|+|+|||..+-..+-+.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 4588887777777776652 122222221100 0012459999999999998766555443
No 469
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.07 E-value=0.96 Score=42.10 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=29.1
Q ss_pred CCCceEeecchhHHHHHHHHHHHhh-hCCeEEEee
Q 007208 103 ASQAILLSGPAELYQQMLAKALAHF-FEAKLLLLD 136 (613)
Q Consensus 103 ~~~~ILLsGP~e~yqe~LaKALA~~-f~a~LL~lD 136 (613)
....|+|.||++.++.+++|+||+. +|..++-+|
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3457999999999999999999999 797776555
No 470
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=80.01 E-value=0.47 Score=44.54 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.6
Q ss_pred CceeeecCCCCCchhhhhhhHH
Q 007208 561 RGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~ 582 (613)
..|++.|+||+|||+|..++..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 471
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=80.00 E-value=0.68 Score=43.48 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.5
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|..++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999864
No 472
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=80.00 E-value=0.81 Score=42.18 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=28.7
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
..-|+|.||++.++.+++|+||+++|..++..|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 346899999999999999999999998876654
No 473
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=79.98 E-value=0.66 Score=49.16 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=21.8
Q ss_pred CCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 558 KPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 558 ~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.+..-+-|.||.|+|||+|.++|+.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 333447789999999999999999653
No 474
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=79.98 E-value=0.51 Score=43.47 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.0
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-.|++.|++|+|||+|..++....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999988654
No 475
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.83 E-value=0.65 Score=43.92 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.2
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|+.++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 476
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=79.73 E-value=1.7 Score=43.86 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCcccccccCCCCCCCceEeecchhHHHHHHHHHHHhhhCCeEEEeec
Q 007208 72 LSGQTRALLTSAAYVHLKHTEVSKYTRNLSPASQAILLSGPAELYQQMLAKALAHFFEAKLLLLDV 137 (613)
Q Consensus 72 Lse~tk~~L~~~a~~hL~~~~~~k~~~~L~~~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~ 137 (613)
+|++....+.......+-.. +. ......-|+|+||++.++.+|+|+|+++++...+.||+
T Consensus 7 ~s~~~~~~~~~~~~~~~l~~----~~--~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 7 FTDKQFENRLNDNLEELIQG----KK--AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTT----CC--CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCHHHHHHHHHHHHHHHhcc----cc--CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 45555555555444443221 11 11223568899999999999999999999655566765
No 477
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.67 E-value=0.57 Score=47.35 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=35.7
Q ss_pred ccccccccccHHHHHHHHHHHHCcCCChhhhhcC----CCCCCCceeeecCCCCCchhhhhhhHHhh
Q 007208 522 SVTFADIGALEEIKESLQELVMLPLRRPDLFKGG----LLKPCRGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 522 ~v~~ddIgGl~~vk~~l~e~v~~pl~~pe~~~~~----~i~~~~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
..+|++++-.+.+.+.+.+.-. ..|.-++.. -+...+.+++.+|+|+|||+.+-..+.+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~---~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGF---EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTC---CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 3568888777777777765422 111111110 01112578999999999998766555443
No 478
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.62 E-value=0.63 Score=42.71 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|..++...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999843
No 479
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.60 E-value=0.69 Score=42.62 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999865
No 480
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=79.47 E-value=0.26 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.0
Q ss_pred eeeecCCCCCchhhhhhhHHhhC
Q 007208 563 ILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e~g 585 (613)
+.+.||.|||||++.++|+....
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45789999999999999998753
No 481
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=79.36 E-value=0.68 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|+|.|++|+|||+|..++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999998864
No 482
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=79.34 E-value=0.87 Score=47.77 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=33.7
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEeecccch
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLDVTDFS 141 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD~~d~~ 141 (613)
+-|+|.||...++..|+++||+.++..++..|+..+-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvY 77 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVY 77 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTB
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccc
Confidence 3589999999999999999999999999999997653
No 483
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=79.25 E-value=0.77 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.6
Q ss_pred CceeeecCCCCCchhhhhhhHHhh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
.-+++.|.+|+|||+++..+|..+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999665
No 484
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=79.25 E-value=0.83 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.3
Q ss_pred eeeecCCCCCchhhhhhhHHh
Q 007208 563 ILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 563 iLL~GPPGtGKT~lAkAiA~e 583 (613)
+.|.||+|+|||+|.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 779999999999999999865
No 485
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=79.24 E-value=0.71 Score=42.46 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=20.6
Q ss_pred CCceeeecCCCCCchhhhhhhHHh
Q 007208 560 CRGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 560 ~~giLL~GPPGtGKT~lAkAiA~e 583 (613)
...|++.|++|+|||+|..++...
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999988754
No 486
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=79.17 E-value=0.66 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.3
Q ss_pred CceeeecCCCCCchhhhhhhHH
Q 007208 561 RGILLFGPPGLGKQCWPRPLPK 582 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~ 582 (613)
.-|++.|+||+|||+|...+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999863
No 487
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=79.13 E-value=0.62 Score=43.57 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=19.7
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999988743
No 488
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.13 E-value=0.94 Score=41.14 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=28.3
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
+-|+|.|+++.++.+++|.||+.+|.+++-.|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35999999999999999999999999876544
No 489
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=79.08 E-value=0.74 Score=43.33 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.2
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999998753
No 490
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.05 E-value=0.96 Score=41.89 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=28.1
Q ss_pred CceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 105 QAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 105 ~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
..|+|.||++.++.+++|.||+++|+.++-.|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 56999999999999999999999997765554
No 491
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=79.04 E-value=1 Score=41.53 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=29.0
Q ss_pred CCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 104 SQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 104 ~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
...|+|.||++.++.+++|.||+++|.+++-.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 457999999999999999999999998866555
No 492
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.94 E-value=1.1 Score=43.44 Aligned_cols=34 Identities=24% Similarity=0.138 Sum_probs=29.5
Q ss_pred CCCceEeecchhHHHHHHHHHHHhhhCCeEEEee
Q 007208 103 ASQAILLSGPAELYQQMLAKALAHFFEAKLLLLD 136 (613)
Q Consensus 103 ~~~~ILLsGP~e~yqe~LaKALA~~f~a~LL~lD 136 (613)
....|+|.||++.++.+++++||+++++.++..|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 3457999999999999999999999998776654
No 493
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.81 E-value=0.75 Score=43.19 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.4
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 494
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=78.78 E-value=0.75 Score=42.62 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.7
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988754
No 495
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=78.76 E-value=0.48 Score=43.89 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=4.8
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999988765
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=78.63 E-value=0.77 Score=43.07 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.1
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|+.++...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 45999999999999999998754
No 497
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=78.61 E-value=0.6 Score=42.70 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.2
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
-.|++.|++|+|||+|..++...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998754
No 498
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=78.52 E-value=0.66 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.0
Q ss_pred ceeeecCCCCCchhhhhhhHHhh
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRL 584 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~ 584 (613)
-+.|.||+|+|||+|.++|+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 46789999999999999998654
No 499
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=78.34 E-value=0.7 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=20.3
Q ss_pred CceeeecCCCCCchhhhhhhHHh
Q 007208 561 RGILLFGPPGLGKQCWPRPLPKR 583 (613)
Q Consensus 561 ~giLL~GPPGtGKT~lAkAiA~e 583 (613)
..|++.|++|+|||+|+.++...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999998764
No 500
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=78.33 E-value=0.76 Score=48.51 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.8
Q ss_pred ceeeecCCCCCchhhhhhhHHhhC
Q 007208 562 GILLFGPPGLGKQCWPRPLPKRLG 585 (613)
Q Consensus 562 giLL~GPPGtGKT~lAkAiA~e~g 585 (613)
-+.|.||+|+|||+|.++|+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 478899999999999999996543
Done!