BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007210
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/536 (39%), Positives = 307/536 (57%), Gaps = 42/536 (7%)
Query: 74 DHHHHSAFDYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDVNVSFLQNFHMTLA-D 132
D ++DY++VGGGT+GCPLAATLS+ + VL+LERG +P + NV F L +
Sbjct: 20 DLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQE 79
Query: 133 TSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFP 190
++ + F+S DG+ N R RVLGG S INAG Y RA++ G WD LVN+++
Sbjct: 80 DDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYE 139
Query: 191 WVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE 250
WVE IV++P + WQ + + L+ GV P +GF+ DH GT+I G+ FD G RH A E
Sbjct: 140 WVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADE 199
Query: 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILS 310
LL N + V + A+V+KI+F ++ A GVI++D NG HQAF+ K EVI+S
Sbjct: 200 LLNKGNSNNLRVGVHASVEKIIF-SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVS 256
Query: 311 CGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLI 370
G IGTPQ+L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+E +++
Sbjct: 257 AGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIV 316
Query: 371 ETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKR 430
+GI S D C + T PP P +
Sbjct: 317 TVLGI---------------SNDFYQCSFSSLPF------TTPPFGFFPSS-------SY 348
Query: 431 TLPHEAFKGGFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMA 489
LP+ F K+A P+S G L+L ++NV +P+V FNY+S+ DL CV G++
Sbjct: 349 PLPNSTF--AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKI 406
Query: 490 AKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYH 549
+++ + Y D VE + +PK D + E FC+++V + WHYH
Sbjct: 407 GELLSTDALKPYKVEDLPGVEGFNILGIP-----LPKDQTDDAAFETFCRESVASYWHYH 461
Query: 550 GGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 605
GGC VGKV+ +++V GI+ LRVVDGST+ +P ++PQG LM+GRY+G+KIL++R
Sbjct: 462 GGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 517
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/530 (39%), Positives = 306/530 (57%), Gaps = 42/530 (7%)
Query: 80 AFDYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDVNVSFLQNFHMTLA-DTSPQSA 138
++DY++VGGGT+GCPLAATLS+ + VL+LERG +P + NV F L + ++
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 85
Query: 139 SQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQI 196
+ F+S DG+ N R RVLGG S INAG Y RA++ G WD LVN+++ WVE I
Sbjct: 86 VERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTI 145
Query: 197 VHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASAN 256
V++P + WQ + + L+ GV P +GF+ DH GT+I G+ FD G RH A ELL N
Sbjct: 146 VYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN 205
Query: 257 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 316
+ V + A+V+KI+F ++ A GVI++D NG HQAF+ K EVI+S G IGT
Sbjct: 206 SNNLRVGVHASVEKIIF-SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGT 262
Query: 317 PQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGIT 376
PQ+L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+E +++ +GI
Sbjct: 263 PQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGI- 321
Query: 377 KLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEA 436
S D C + T PP P + LP+
Sbjct: 322 --------------SNDFYQCSFSSLPF------TTPPFGFFPSS-------SYPLPNST 354
Query: 437 FKGGFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQS 495
F K+A P+S G L+L ++NV +P+V FNY+S+ DL CV G++ +++ +
Sbjct: 355 F--AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLST 412
Query: 496 KHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG 555
Y D VE + +PK D + E FC+++V + WHYHGGC VG
Sbjct: 413 DALKPYKVEDLPGVEGFNILGIP-----LPKDQTDDAAFETFCRESVASYWHYHGGCLVG 467
Query: 556 KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 605
KV+ +++V GI+ LRVVDGST+ +P ++PQG LM+GRY+G+KIL++R
Sbjct: 468 KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 517
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/536 (38%), Positives = 309/536 (57%), Gaps = 41/536 (7%)
Query: 74 DHHHHSAFDYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDVNVSFLQNFHMTLA-D 132
D ++DY++VGGGT+GCPLAATLS+ + VL+LERG +P + N+ F L +
Sbjct: 20 DLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSDGFIYNLQQE 79
Query: 133 TSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFP 190
Q+ + F+S DG+ + R RVLGG S INAG Y RA+++ G WD LVN+++
Sbjct: 80 DDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWDMDLVNQTYD 139
Query: 191 WVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE 250
WVE IV++P ++ WQ + + L+ GV P NGF+ DH GT++ G+ FD G RH + E
Sbjct: 140 WVEDTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDNNGTRHASDE 199
Query: 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILS 310
LL +P + V + A+V+KI+F ++ A+GVI+KD NG HQAF+ G + EVI+S
Sbjct: 200 LLNKGDPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRG--EGEVIVS 257
Query: 311 CGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLI 370
G IG+PQ+L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+E S +
Sbjct: 258 AGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPSTV 317
Query: 371 ETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKR 430
+GIT + C + +IPP P
Sbjct: 318 TVLGITS---------------NFYQCSFSSLPF------SIPPFAFFPNP-------TY 349
Query: 431 TLPHEAFKGGFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMA 489
LP+ F + K+ P+S G ++L +++V P+V FNY+S+ DL CV G++
Sbjct: 350 PLPNSTF--AHFVNKVPGPLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKI 407
Query: 490 AKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYH 549
+++ S Y D ++ + +P++ D + E FC++ V + WHYH
Sbjct: 408 GELLSSDALKPYKVEDLPGIDGFDILGIP-----LPENQTDDAAFETFCREAVASYWHYH 462
Query: 550 GGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 605
GGC VG+V+ +++V GI+ LRVVDGST+ SP ++PQG LM+GRY+G KIL++R
Sbjct: 463 GGCLVGEVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKILQER 518
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 132/578 (22%), Positives = 242/578 (41%), Gaps = 87/578 (15%)
Query: 81 FDYIVVGGGTAGCPLAATLSQN--FTVLLLERGGVPFSDVNVSFLQNFHM-------TLA 131
FDY+VVG G AG +AA L+++ +VL+LE G SD NV + + ++
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAG---VSDENVLGAEAPLLAPGLVPNSIF 59
Query: 132 DTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERM-------GWDAKL 184
D + + +Q + + R R+LGG SS++ R S++ +R GW+
Sbjct: 60 DWNYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDN 119
Query: 185 VNESFPWVERQIVHQPKQE------------------------GWQKALRDSLLDVGVSP 220
+ + +V + + P + G+ L D +L
Sbjct: 120 IQQ---FVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQ 176
Query: 221 FNGFTYDHIYGTK----IGGTIFD-RFGRRHTA--AELLASANPQKITVLIRATVQKIVF 273
F ++ GT I +I G+R ++ A L + + ++VLI A V K+V
Sbjct: 177 SEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVN 236
Query: 274 D-TSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELE 332
T+ P V + ++ G A K EV+LS G++GTP +L+LSG+G + +L
Sbjct: 237 SGTTNGLPAFRCVEYAEQEGAPTTTVCA---KKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 333 KLNISVVLDNAHIGKGMADNPM--NAVFVPSNRPVEQSLIETVGI-TKLGVYIEASSGFG 389
+ I +++N +G+ ++D+ + A FV SN+ + ++ L + +G
Sbjct: 294 SVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPL 353
Query: 390 ESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAF----KGGF--IL 443
+ + H + + T P P + H A G F +
Sbjct: 354 TALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHPAIPRPDTGSFMSVT 413
Query: 444 EKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQ 503
+ SP++ G++ L +N D P ++ Y S D+ + V+ + + + + ++
Sbjct: 414 NALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF-- 471
Query: 504 CDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK------V 557
V + +R D ++E + +D TI+H G + V
Sbjct: 472 -----VIRPFDPRLR--------DPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGV 518
Query: 558 VSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGR 595
V + KV G+D LR+VDGS +P + QG + ++G+
Sbjct: 519 VDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK 556
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 146/581 (25%), Positives = 245/581 (42%), Gaps = 114/581 (19%)
Query: 81 FDYIVVGGGTAGCPLAATLSQN--FTVLLLERG----GVPFS---DVNVSFLQNFHMTLA 131
FDYIVVGGG+AG +AA LS++ +V L+E G GVP D + L++ +
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 132 DTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKL------V 185
PQ F+ +ARA+V+GG SS NA A + ++ W+AK
Sbjct: 74 PIEPQENGNSFMR-----HARAKVMGGCSSHNACIAFWAPREDLDE--WEAKYGATGWNA 126
Query: 186 NESFPWVER--------------------QIVHQPKQEGWQKALRDSLLDVGV--SPFNG 223
++P +R +++ P ++ AL D+ G+ + FN
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT 186
Query: 224 FTYDHIYGTKIGGTIFDRFGRRHTAAELLASAN-------PQKITVLIRATVQKIVFDTS 276
T T + G F + RR +S + + T+L +++VFD +
Sbjct: 187 GT------TVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-A 239
Query: 277 GKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNI 336
+R V ++ G+ H+ ++EV+LS GAI TP++L LSG+GP A L + I
Sbjct: 240 DRRCTGVDIV-DSAFGHTHRL----TARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294
Query: 337 SVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIH 396
V++D+ +G+ + D+P V + +P+ + E+ ++G++ G R +
Sbjct: 295 EVLVDSPGVGEHLQDHPEGVVQFEAKQPM---VAESTQWWEIGIFTPTEDGL--DRPDLM 349
Query: 397 CHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL-EKIASPISTGEL 455
H+G + ++ L P + GF L + S G +
Sbjct: 350 MHYGSVPFDMNTLRHGYPTT---------------------ENGFSLTPNVTHARSRGTV 388
Query: 456 SLINTNVDDNPSVSFNYFSHPL--DLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAIL 513
L + + D P V YF+ P D++ V G+R A +I +T + L
Sbjct: 389 RLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRE-------L 441
Query: 514 NASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKV------VSTEYKVLGI 567
+ V A + + L+ + + T T++H G +G V + E +V G+
Sbjct: 442 SPGVEAQTD---------EELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGV 492
Query: 568 DRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 608
LRV D S E NP TV+M+G I R G+
Sbjct: 493 TGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARAGE 533
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 145/581 (24%), Positives = 245/581 (42%), Gaps = 114/581 (19%)
Query: 81 FDYIVVGGGTAGCPLAATLSQN--FTVLLLERG----GVPFS---DVNVSFLQNFHMTLA 131
FDYIVVGGG+AG +AA LS++ +V L+E G GVP D + L++ +
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 132 DTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKL------V 185
PQ F+ +ARA+V+GG SS N+ A + ++ W+AK
Sbjct: 74 PIEPQENGNSFMR-----HARAKVMGGCSSHNSCIAFWAPREDLDE--WEAKYGATGWNA 126
Query: 186 NESFPWVER--------------------QIVHQPKQEGWQKALRDSLLDVGV--SPFNG 223
++P +R +++ P ++ AL D+ G+ + FN
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT 186
Query: 224 FTYDHIYGTKIGGTIFDRFGRRHTAAELLASAN-------PQKITVLIRATVQKIVFDTS 276
T T + G F + RR +S + + T+L +++VFD +
Sbjct: 187 GT------TVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-A 239
Query: 277 GKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNI 336
+R V ++ G+ H+ ++EV+LS GAI TP++L LSG+GP A L + I
Sbjct: 240 DRRCTGVDIV-DSAFGHTHRL----TARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294
Query: 337 SVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIH 396
V++D+ +G+ + D+P V + +P+ + E+ ++G++ G R +
Sbjct: 295 EVLVDSPGVGEHLQDHPEGVVQFEAKQPM---VAESTQWWEIGIFTPTEDGL--DRPDLM 349
Query: 397 CHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL-EKIASPISTGEL 455
H+G + ++ L P + GF L + S G +
Sbjct: 350 MHYGSVPFDMNTLRHGYPTT---------------------ENGFSLTPNVTHARSRGTV 388
Query: 456 SLINTNVDDNPSVSFNYFSHPL--DLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAIL 513
L + + D P V YF+ P D++ V G+R A +I +T + L
Sbjct: 389 RLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRE-------L 441
Query: 514 NASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKV------VSTEYKVLGI 567
+ V A + + L+ + + T T++H G +G V + E +V G+
Sbjct: 442 SPGVEAQTD---------EELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGV 492
Query: 568 DRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 608
LRV D S E NP TV+M+G I R G+
Sbjct: 493 TGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARAGE 533
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 145/581 (24%), Positives = 244/581 (41%), Gaps = 114/581 (19%)
Query: 81 FDYIVVGGGTAGCPLAATLSQN--FTVLLLERG----GVPFS---DVNVSFLQNFHMTLA 131
FDYIVVGGG+AG +AA LS++ +V L+E G GVP D + L++ +
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 132 DTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKL------V 185
PQ F+ +ARA+V+GG SS N+ A + ++ W+AK
Sbjct: 74 PIEPQENGNSFMR-----HARAKVMGGCSSHNSCIAFWAPREDLDE--WEAKYGATGWNA 126
Query: 186 NESFPWVER--------------------QIVHQPKQEGWQKALRDSLLDVGV--SPFNG 223
++P +R +++ P ++ AL D+ G+ + FN
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT 186
Query: 224 FTYDHIYGTKIGGTIFDRFGRRHTAAELLASAN-------PQKITVLIRATVQKIVFDTS 276
T T + G F + RR +S + + T+L +++VFD +
Sbjct: 187 GT------TVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-A 239
Query: 277 GKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNI 336
+R V ++ G+ H+ ++EV+LS GAI TP++L LSG+GP A L + I
Sbjct: 240 DRRCTGVDIV-DSAFGHTHRL----TARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294
Query: 337 SVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIH 396
V++D+ +G+ + D+P V + +P+ + E+ ++G++ G R +
Sbjct: 295 EVLVDSPGVGEHLQDHPEGVVQFEAKQPM---VAESTQWWEIGIFTPTEDGL--DRPDLM 349
Query: 397 CHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL-EKIASPISTGEL 455
H+G + ++ L P + GF L + S G +
Sbjct: 350 MHYGSVPFDMNTLRHGYPTT---------------------ENGFSLTPNVTHARSRGTV 388
Query: 456 SLINTNVDDNPSVSFNYFSHPL--DLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAIL 513
L + + D P V YF+ P D++ V G+R A +I +T + L
Sbjct: 389 RLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRE-------L 441
Query: 514 NASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKV------VSTEYKVLGI 567
+ V A + + L+ + + T T +H G +G V + E +V G+
Sbjct: 442 SPGVEAQTD---------EELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGV 492
Query: 568 DRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 608
LRV D S E NP TV+M+G I R G+
Sbjct: 493 TGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARAGE 533
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 139/599 (23%), Positives = 249/599 (41%), Gaps = 122/599 (20%)
Query: 79 SAFDYIVVGGGTAGCPLAATLSQN--FTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQ 136
S FD+++VGGGTAG +A L++N TVL++E G D+ + M L ++
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 137 SASQY-FISTDGV-----LNARARVLGGGSSINAGFYT-----RASSQFIERMG-----W 180
A + + D N R + LGG SS+N ++T +A+ E G W
Sbjct: 65 WAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLN--YFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 181 D--AKLVNESFPWVERQIVHQPKQE----GWQKALRDSLLDVGVSPF-NGFT-------- 225
D + +S + + ++ P+ E G + + L ++PF T
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182
Query: 226 --YDHIYGTKIGGTIF--DRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPK 281
++IY ++ G D R + L N IT++ ++++ + + + K
Sbjct: 183 PLIENIYDGEMDGLTHCCDTIYRGQRSGSFLFVKNKPNITIVPEVHSKRLIINEADRTCK 242
Query: 282 AVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLD 341
V V+ GN+ F EVILS G TP++L LSG+GP EL + I+ ++D
Sbjct: 243 GVTVV--TAAGNELNFFA----DREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 342 NAHIGKGMADNP------------------------MNAVFVPSNR----PVEQSLIETV 373
+ H+G+ + D+P +AV N+ PV L+E V
Sbjct: 297 SRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELV 356
Query: 374 GITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLP 433
G ++ Y+E + + +++ +A G+ P Q P D++ +
Sbjct: 357 GFPRIDKYLEKDAEYRKAK----------AANGGKDPFSPLGQ--PHFELDFV----CMF 400
Query: 434 HEAFKGGF----------ILEKIASPIST-GELSLINTNVDDNPSVSFNYFSHPLDLKRC 482
AF+ F ++ + PIS GE++L + + P+++ N+F++ LD+
Sbjct: 401 GTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAM 460
Query: 483 VDGVRMAAKIV-QSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDT 541
+G+R + ++ + + F + + + E L++ K + + D
Sbjct: 461 REGIRFSYDLLFKGEGFKDLVES-EYPWEMPLDSD---------------KEMHRAVLDR 504
Query: 542 VITIWHYHGGCHVGK-----VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGR 595
T +H G + K VV + KV GI +LRV D S P Q +V +G
Sbjct: 505 CQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGE 563
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 123/539 (22%), Positives = 208/539 (38%), Gaps = 96/539 (17%)
Query: 77 HHSAFDYIVVGGGTAGCPLAATLSQN--FTVLLLERGGVPFS-DV-NVSFLQNFHMTLAD 132
H D ++VGGG+AG LAA LS++ VLL+E G P D+ N + D
Sbjct: 14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYD 73
Query: 133 TSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE---------RMGWDAK 183
++ +Q + AR R++GG S ++A Y R + R GWD
Sbjct: 74 WDYRTEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133
Query: 184 L----VNESFPWVERQI--------VHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYG 231
L E P I +H P E L + ++ G S H G
Sbjct: 134 LPVFQAIEDHPLGGDGIHGKGGPLPIHLPADE--VSPLARAFIEAGASLGLPRLEGHNSG 191
Query: 232 TKIGGT---IFDRFGRRHTAAELL---ASANPQKITVLIRATVQKIVFDTSGKRPKAVGV 285
IG T + R GRR TAA+ A + +T+L + V+++ + G + +++ V
Sbjct: 192 EMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEV 249
Query: 286 IFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHI 345
+ G Q A + + +++L GA+ +P +L SG+GP L+ + ++D I
Sbjct: 250 V-----GRQGSAEVFAD---QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDI 301
Query: 346 GKGMADNPMNA-VFVPSNRPVEQSLIETVGITKLGVYIEASS--GFGESRDSIHCHHGIM 402
G+ + D+ + A + +PV S ++ ++ Y+ A S G+ + C +
Sbjct: 302 GRNLQDHLLGAGNLYAARKPVPPSRLQH---SESMAYMRADSFTAAGQPEIVVGCGVAPI 358
Query: 403 SAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGF-ILEKIASPISTGELSLINTN 461
+E + P A + +L I P S G + +
Sbjct: 359 VSE-------------------------SFPAPAAGSAYSLLFGITHPTSRGSVRISGPE 393
Query: 462 VDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANV 521
+ D + Y D +R + + I + + +
Sbjct: 394 LGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERE---------------- 437
Query: 522 NLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK----VVSTEYKVLGIDRLRVVDGS 576
L+P N ++ F +VIT H G C +GK VV ++ +D L VVD S
Sbjct: 438 -LLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDAS 495
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 141/612 (23%), Positives = 219/612 (35%), Gaps = 153/612 (25%)
Query: 82 DYIVVGGGTAGCPLAATLSQN--FTVLLLERG------GVPFSDVNVSFLQNFHMTLADT 133
DYI+ GGG G AA L++N +VL++E G G D+N D
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNA---------YGDI 71
Query: 134 SPQSASQYFISTDGVLNARARV------LGGGSSINAGFYTRASSQFIERMGWDAKLVNE 187
S + + + N + + LGG + +N G +TR ++ W+ NE
Sbjct: 72 FGSSVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDS--WETVFGNE 129
Query: 188 SFPW---------VER-------QI----------------VHQ-PKQEGWQ-----KAL 209
+ W ER QI VH P+ G KAL
Sbjct: 130 GWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKAL 189
Query: 210 RDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK--ITVLIRAT 267
++ D GV F +G + R AA N Q+ + VL
Sbjct: 190 MSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQY 249
Query: 268 VQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGP 327
V K++ +G P+AVGV F GN H + K EV+L+ G+ +P +L+ SG+G
Sbjct: 250 VGKVLLSQNGTTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSGIGM 305
Query: 328 KAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGI--TKLGVYIEAS 385
K+ LE L I V+D +G + D V +S I + G + + +
Sbjct: 306 KSILEPLGIDTVVD-LPVGLNLQDQTTATV---------RSRITSAGAGQGQAAWFATFN 355
Query: 386 SGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAI------------------QDYIR 427
FG+ + H +L +Q EA+ +D+I
Sbjct: 356 ETFGDYSEKAH-----------ELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIV 404
Query: 428 NKRTLPHEAFKGGFILEKIAS-------PISTGELSLINTNVDDNPSVSF-----NYFSH 475
N E F +AS P + G + ++ D +P + YF +
Sbjct: 405 NHNVAYSELF---LDTAGVASFDVWDLLPFTRGYVHIL----DKDPYLHHFAYDPQYFLN 457
Query: 476 PLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAI-LNASVRANVNLVPKHTNDTKSL 534
LDL ++A I S Y + + + +A + A +P H
Sbjct: 458 ELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPN--- 514
Query: 535 EQFCKDTVITIWHYHGGC-----HVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGT 589
+H G C +G VV +V G+ LRV+DGS P T
Sbjct: 515 -----------YHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSI----PPTQMSSH 559
Query: 590 VLMMGRYMGVKI 601
V+ + M +KI
Sbjct: 560 VMTVFYAMALKI 571
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 131/600 (21%), Positives = 223/600 (37%), Gaps = 128/600 (21%)
Query: 81 FDYIVVGGGTAGCPLAATLSQN--FTVLLLERG------GVPFSDVNVSFLQNFHMTLAD 132
+DYI+ GGG G +AA L++N VL++E+G G D N ++ Q F T+
Sbjct: 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPN-AYGQIFGTTV-- 81
Query: 133 TSPQSASQYFISTDGVLNARARV-----LGGGSSINAGFYTRASSQFIERMGWDAKLVNE 187
Q +++ + N + LGG + IN +TR I+ W+ E
Sbjct: 82 ------DQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDS--WEKVFGME 133
Query: 188 SFPWVERQIVHQPKQEG------------------------------------WQ---KA 208
+ W + + K E W KA
Sbjct: 134 GWNW-DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192
Query: 209 LRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK--ITVLIRA 266
L +++ +GV F H G + D R AA N Q+ + +L
Sbjct: 193 LMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQ 252
Query: 267 TVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 326
V K++F + P+AVGV F F K EV+L+ G+ +P +L+ SG+G
Sbjct: 253 MVGKVLFKQTASGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIG 308
Query: 327 PKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASS 386
K+ L++ N++ +LD +G M D V S+R G + + +
Sbjct: 309 LKSVLDQANVTQLLD-LPVGINMQDQTTTTV---SSRASSAG----AGQGQAVFFANFTE 360
Query: 387 GFG----ESRDSIHCHHGIMSAEI---GQLSTIPPKQRTPEAIQDYIRNKRTLPHEAF-- 437
FG ++RD ++ + E G + + E ++++ ++ E F
Sbjct: 361 TFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMD 420
Query: 438 ---KGGFILEKIASPISTGELSLINTN-----VDDNPSVSFNYFSHPLDLKRCVDGVRMA 489
K F L + P + G + +++++ ++P +F + DL ++A
Sbjct: 421 TEGKINFDLWDLI-PFTRGSVHILSSDPYLWQFANDPK----FFLNEFDLLGQAAASKLA 475
Query: 490 AKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKS---LEQFCKDTVITIW 546
+ Q +++ NLV T S L+ F + W
Sbjct: 476 RDL-----------TSQGAMKEYFAGETLPGYNLVQNATLSQWSDYVLQNFRPN-----W 519
Query: 547 HYHGGC-----HVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKI 601
H C +G VV KV G LRV+DGS P T V+ + M +K+
Sbjct: 520 HAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTIFYGMALKV 575
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 126/325 (38%), Gaps = 58/325 (17%)
Query: 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG-----------VPFSDVNVSFLQNF 126
+ +DYI+VG G G A LS+ VLLLERGG P++ S L F
Sbjct: 1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWA--TSSGLTKF 58
Query: 127 HMTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASS-QFIERMGWDAKLV 185
+ S + S F + ++GGG+S+N Y + F +GW +
Sbjct: 59 DIPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWT 118
Query: 186 NESFPWVER-----QIVHQPKQEGWQKALRDSLLDVGVSPFNGFTY------------DH 228
N + P+ + P +G Q+ L S +V G Y DH
Sbjct: 119 NHA-PYTSKLSSRLPSTDHPSTDG-QRYLEQS-FNVVSQLLKGQGYNQATINDNPNYKDH 175
Query: 229 IYGTKIGGTIFDRF-GRRH--TAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGV 285
++G + FD G+R A L + T V +V + S + +GV
Sbjct: 176 VFGY----SAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS----QILGV 227
Query: 286 IFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLD---- 341
D + F+ PK VILS GA GT ++L SG+GP ++ + +
Sbjct: 228 QTNDPTLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALP 286
Query: 342 ------NAHIGKGMADNP-MNAVFV 359
N +G DNP +N VF
Sbjct: 287 PQNQWINLPVGMNAQDNPSINLVFT 311
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 517 VRANVNLVPKHT----NDTKSLEQFCK---DTVITIWHYHGGCHVGK-----VVSTEYKV 564
V +N+ +P T + T++LE++ + H+ +G VV + KV
Sbjct: 438 VVSNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKV 497
Query: 565 LGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 602
G + L +VD P NPQGT++ KIL
Sbjct: 498 FGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 535
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 126/325 (38%), Gaps = 58/325 (17%)
Query: 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG-----------VPFSDVNVSFLQNF 126
+ +DYI+VG G G A LS+ VLLLERGG P++ S L F
Sbjct: 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWA--TSSGLTKF 63
Query: 127 HMTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASS-QFIERMGWDAKLV 185
+ S + S F + ++GGG+S+N Y + F +GW +
Sbjct: 64 DIPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWT 123
Query: 186 NESFPWVER-----QIVHQPKQEGWQKALRDSLLDVGVSPFNGFTY------------DH 228
N + P+ + P +G Q+ L S +V G Y DH
Sbjct: 124 NHA-PYTSKLSSRLPSTDHPSTDG-QRYLEQS-FNVVSQLLKGQGYNQATINDNPNYKDH 180
Query: 229 IYGTKIGGTIFDRF-GRRH--TAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGV 285
++G + FD G+R A L + T V +V + S + +GV
Sbjct: 181 VFGY----SAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS----QILGV 232
Query: 286 IFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLD---- 341
D + F+ PK VILS GA GT ++L SG+GP ++ + +
Sbjct: 233 QTNDPTLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALP 291
Query: 342 ------NAHIGKGMADNP-MNAVFV 359
N +G DNP +N VF
Sbjct: 292 PQNQWINLPVGMNAQDNPSINLVFT 316
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 517 VRANVNLVPKHT----NDTKSLEQFCK---DTVITIWHYHGGCHVGK-----VVSTEYKV 564
V +N+ +P T + T++LE++ + H+ +G VV + KV
Sbjct: 443 VVSNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKV 502
Query: 565 LGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 602
G + L +VD P NPQGT++ KIL
Sbjct: 503 FGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 540
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 535 EQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 594
+ FC +H GGC +GK +V G L V DGS S G NP T+ +
Sbjct: 437 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA 489
Query: 595 RYMGVKILRQ 604
+I++Q
Sbjct: 490 ERNVERIIKQ 499
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 535 EQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 594
+ FC +H GGC +GK +V G L V DGS S G NP T+ +
Sbjct: 437 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA 489
Query: 595 RYMGVKILRQ 604
+I++Q
Sbjct: 490 ERNVERIIKQ 499
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 535 EQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 594
+ FC +H GGC +GK +V G L V DGS S G NP T+ +
Sbjct: 435 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA 487
Query: 595 RYMGVKILRQ 604
+I++Q
Sbjct: 488 ERNVERIIKQ 497
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 535 EQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 594
+ FC + + GGC +GK +V G L V DGS S G NP T+ +
Sbjct: 437 DDFCYNPL-------GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA 489
Query: 595 RYMGVKILRQ 604
+I++Q
Sbjct: 490 ERNVERIIKQ 499
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 535 EQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 594
+ FC +H GGC +GK +V G L V DGS S G +P T+ +
Sbjct: 437 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTITALA 489
Query: 595 RYMGVKILRQ 604
+I++Q
Sbjct: 490 ERNVERIIKQ 499
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 550 GGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 604
GGC +GK +V G L V DGS S G NP T+ + +I++Q
Sbjct: 445 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 550 GGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 604
GGC +GK +V G L V DGS S G NP T+ + +I++Q
Sbjct: 447 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 501
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 550 GGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 604
GGC +GK +V G L V DGS S G NP T+ + +I++Q
Sbjct: 445 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 81 FDYIVVGGGTAGCPLAATLS-QNFTVLLLERGGVPFSDVNVSFL 123
FD IV+GGG G LA+ ++ + VLLLER P + S L
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLL 51
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 535 EQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 594
+ FC +H GGC +GK +V G L V DGS S G P T+ +
Sbjct: 437 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVLPFVTITALA 489
Query: 595 RYMGVKILRQ 604
+I++Q
Sbjct: 490 ERNVERIIKQ 499
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of
10- Formyltetrahydrofolate Dehydrogenase
Length = 310
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 414 PKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSL---INTNVDDNPSVSF 470
P+ R AI TL H KGGF + + TG+L L DD S +
Sbjct: 111 PRHRGASAIN------WTLIHGDKKGGFTIFWADDGLDTGDLLLQKECEVLPDDTVSTLY 164
Query: 471 NYFSHPLDLKRCVDGVRM-----AAKIVQSKHFLNYTQCDQKSVEAI 512
N F P +K V VR+ A + QS+ Y +K I
Sbjct: 165 NRFLFPEGIKGMVQAVRLIAEGTAPRCPQSEEGATYEGIQKKETAKI 211
>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
pdb|4EYE|B Chain B, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
Length = 342
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 19/75 (25%)
Query: 157 GGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEGWQKALRDSL--- 213
G G+ + A A+++F++ +G D L P +EGW KA+R++
Sbjct: 182 GMGAKVIAVVNRTAATEFVKSVGADIVL---------------PLEEGWAKAVREATGGA 226
Query: 214 -LDVGVSPFNGFTYD 227
+D+ V P G +D
Sbjct: 227 GVDMVVDPIGGPAFD 241
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With 6-
Formyltetrahydropterin
Length = 329
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 414 PKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSL---INTNVDDNPSVSF 470
P+ R AI TL H KGGF + + TG+L L DD S +
Sbjct: 133 PRHRGASAIN------WTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLY 186
Query: 471 NYFSHPLDLKRCVDGVRMAAK 491
N F P +K V VR+ A+
Sbjct: 187 NRFLFPEGIKGMVQAVRLIAE 207
>pdb|1VR5|A Chain A, Crystal Structure Of Oligopeptide Abc Transporter,
Periplasmic Oligopeptide-Binding (Tm1223) From
Thermotoga Maritima At 1.73 A Resolution
pdb|1VR5|B Chain B, Crystal Structure Of Oligopeptide Abc Transporter,
Periplasmic Oligopeptide-Binding (Tm1223) From
Thermotoga Maritima At 1.73 A Resolution
Length = 547
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 508 SVEAILNASVRANVNLVPKHTNDTKS------------LEQFCKDTVITIWHYHGGCHVG 555
S+++I V+ +N+ PK+ + +K L F TIW Y G
Sbjct: 383 SIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYP 442
Query: 556 KVVSTEYKVLG 566
V +EY G
Sbjct: 443 DAVESEYSYSG 453
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 84 IVVGGGTAGCPLAATLSQNFTVLLLERGGVPF 115
++VG G G LA LSQ + V ++++ VP+
Sbjct: 12 VIVGNGPGGFELAKQLSQTYEVTVIDKEPVPY 43
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 82 DYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQ 136
DY+V+G G AG LS + V++LER P + + H T+A +PQ
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVLEREAQP--GYHSTGRSAAHYTVAYGTPQ 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,506,658
Number of Sequences: 62578
Number of extensions: 739435
Number of successful extensions: 2511
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2418
Number of HSP's gapped (non-prelim): 73
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)