Query 007210
Match_columns 612
No_of_seqs 366 out of 2282
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 20:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 6.4E-89 1.4E-93 740.9 48.7 563 42-612 25-587 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 4.4E-86 9.4E-91 688.3 35.8 505 76-611 53-622 (623)
3 PRK02106 choline dehydrogenase 100.0 4.7E-74 1E-78 631.1 40.0 494 78-605 3-535 (560)
4 TIGR01810 betA choline dehydro 100.0 2.7E-73 5.8E-78 621.9 40.3 486 82-604 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 1.1E-66 2.3E-71 564.1 35.0 489 78-604 5-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 8.4E-50 1.8E-54 425.4 35.8 465 81-604 1-542 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 1.2E-43 2.5E-48 361.1 13.2 263 81-353 1-295 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 1.5E-32 3.1E-37 248.3 11.2 136 449-597 1-144 (144)
9 PRK06481 fumarate reductase fl 99.8 2.6E-18 5.7E-23 186.7 20.2 192 77-323 58-260 (506)
10 PRK12845 3-ketosteroid-delta-1 99.7 1.4E-16 3E-21 174.3 15.5 63 251-322 223-286 (564)
11 PRK07121 hypothetical protein; 99.7 2.4E-16 5.2E-21 171.4 14.1 193 78-322 18-247 (492)
12 PRK12835 3-ketosteroid-delta-1 99.7 6.6E-16 1.4E-20 170.0 15.9 62 253-322 221-283 (584)
13 PRK12844 3-ketosteroid-delta-1 99.6 3.9E-15 8.5E-20 163.3 16.5 63 251-322 214-277 (557)
14 PRK12834 putative FAD-binding 99.6 3.9E-15 8.5E-20 163.6 15.9 194 78-322 2-235 (549)
15 PRK12837 3-ketosteroid-delta-1 99.6 3.5E-15 7.5E-20 162.6 14.2 63 251-322 179-243 (513)
16 PF00890 FAD_binding_2: FAD bi 99.6 5.2E-15 1.1E-19 158.1 12.5 188 82-322 1-209 (417)
17 PRK08274 tricarballylate dehyd 99.6 1.2E-14 2.5E-19 157.4 14.6 195 78-327 2-204 (466)
18 PTZ00306 NADH-dependent fumara 99.6 1.8E-14 3.8E-19 170.2 16.0 196 72-318 401-623 (1167)
19 PRK12839 hypothetical protein; 99.6 3E-14 6.6E-19 156.4 16.6 63 251-321 220-283 (572)
20 PRK07573 sdhA succinate dehydr 99.6 1E-14 2.2E-19 162.0 12.6 199 62-316 18-233 (640)
21 TIGR01813 flavo_cyto_c flavocy 99.6 2.6E-14 5.6E-19 153.6 13.0 63 251-321 136-199 (439)
22 PRK07843 3-ketosteroid-delta-1 99.5 7.6E-14 1.6E-18 153.4 16.4 62 252-322 215-276 (557)
23 PRK12843 putative FAD-binding 99.5 9.6E-14 2.1E-18 153.3 17.0 63 251-322 227-290 (578)
24 PRK06175 L-aspartate oxidase; 99.5 4.4E-14 9.5E-19 150.5 13.9 177 79-316 3-190 (433)
25 PLN00128 Succinate dehydrogena 99.5 1.3E-13 2.9E-18 152.6 16.7 59 251-317 193-252 (635)
26 PRK06452 sdhA succinate dehydr 99.5 9.5E-14 2.1E-18 152.8 15.0 56 251-315 142-198 (566)
27 PRK12842 putative succinate de 99.5 2.4E-13 5.1E-18 150.3 16.9 62 251-321 220-281 (574)
28 PRK06263 sdhA succinate dehydr 99.5 8.2E-14 1.8E-18 153.1 13.0 181 78-316 5-198 (543)
29 PLN02815 L-aspartate oxidase 99.5 5E-14 1.1E-18 154.6 11.3 182 78-316 27-223 (594)
30 PRK09078 sdhA succinate dehydr 99.5 1.6E-13 3.5E-18 151.8 14.5 58 251-316 155-213 (598)
31 PTZ00139 Succinate dehydrogena 99.5 1.8E-13 3.8E-18 151.7 14.3 58 251-316 172-230 (617)
32 PRK08958 sdhA succinate dehydr 99.5 1.2E-13 2.6E-18 152.4 12.1 58 251-316 149-207 (588)
33 PRK07395 L-aspartate oxidase; 99.5 8E-14 1.7E-18 152.5 10.6 178 78-316 7-198 (553)
34 PRK06134 putative FAD-binding 99.5 7.4E-13 1.6E-17 146.3 17.0 62 251-321 223-284 (581)
35 PRK09077 L-aspartate oxidase; 99.5 5.8E-13 1.3E-17 145.9 15.0 180 78-316 6-208 (536)
36 PRK09231 fumarate reductase fl 99.4 7.6E-13 1.7E-17 146.0 14.8 57 251-316 139-197 (582)
37 PRK08641 sdhA succinate dehydr 99.4 7.8E-13 1.7E-17 146.1 14.2 50 259-316 151-201 (589)
38 PRK07804 L-aspartate oxidase; 99.4 7E-13 1.5E-17 145.3 13.4 180 78-316 14-211 (541)
39 PRK07057 sdhA succinate dehydr 99.4 6.6E-13 1.4E-17 146.7 13.2 58 251-316 154-212 (591)
40 PRK08626 fumarate reductase fl 99.4 7.2E-13 1.6E-17 147.6 13.4 57 251-316 164-221 (657)
41 PRK08071 L-aspartate oxidase; 99.4 1.2E-12 2.6E-17 142.4 13.8 56 251-316 136-191 (510)
42 TIGR01176 fum_red_Fp fumarate 99.4 1.6E-12 3.5E-17 143.0 14.2 57 251-316 138-196 (580)
43 PRK05945 sdhA succinate dehydr 99.4 1.6E-12 3.6E-17 143.6 14.3 57 251-316 141-198 (575)
44 PRK06069 sdhA succinate dehydr 99.4 1.9E-12 4.1E-17 143.3 13.8 57 251-316 143-201 (577)
45 PRK07803 sdhA succinate dehydr 99.4 1.1E-12 2.3E-17 145.9 11.8 49 260-317 166-215 (626)
46 TIGR00551 nadB L-aspartate oxi 99.4 4.4E-12 9.6E-17 137.6 14.5 56 251-316 134-190 (488)
47 PRK08205 sdhA succinate dehydr 99.4 4.1E-12 8.9E-17 140.5 14.0 58 251-316 146-207 (583)
48 TIGR01812 sdhA_frdA_Gneg succi 99.4 5.5E-12 1.2E-16 139.7 14.3 57 251-316 135-192 (566)
49 TIGR01811 sdhA_Bsu succinate d 99.3 6.5E-12 1.4E-16 138.9 12.8 52 257-316 145-197 (603)
50 COG2081 Predicted flavoprotein 99.3 1.1E-11 2.3E-16 124.3 12.4 168 79-319 2-171 (408)
51 PRK07512 L-aspartate oxidase; 99.3 8.7E-12 1.9E-16 135.8 12.4 56 251-316 142-198 (513)
52 PRK08275 putative oxidoreducta 99.3 8.2E-12 1.8E-16 137.5 12.3 58 251-316 143-201 (554)
53 TIGR02061 aprA adenosine phosp 99.3 2.2E-11 4.8E-16 133.9 14.1 54 255-316 136-192 (614)
54 PF03486 HI0933_like: HI0933-l 99.3 5.5E-12 1.2E-16 132.0 8.4 186 81-340 1-189 (409)
55 PRK06854 adenylylsulfate reduc 99.3 3E-11 6.5E-16 134.0 13.8 57 251-316 138-196 (608)
56 PRK13800 putative oxidoreducta 99.2 4.1E-11 8.8E-16 138.9 12.6 40 74-113 7-47 (897)
57 COG1053 SdhA Succinate dehydro 99.2 5.5E-11 1.2E-15 128.9 10.3 212 78-355 4-241 (562)
58 TIGR02485 CobZ_N-term precorri 99.2 9.4E-11 2E-15 125.6 10.6 61 251-322 129-191 (432)
59 PRK04176 ribulose-1,5-biphosph 99.2 2.5E-10 5.4E-15 112.6 12.2 35 78-112 23-58 (257)
60 PF01946 Thi4: Thi4 family; PD 99.1 2E-10 4.4E-15 106.1 9.8 35 78-112 15-50 (230)
61 PRK11101 glpA sn-glycerol-3-ph 99.1 4.5E-10 9.8E-15 123.4 13.4 65 251-325 155-220 (546)
62 COG1635 THI4 Ribulose 1,5-bisp 99.1 3.4E-10 7.4E-15 103.7 10.1 35 78-112 28-63 (262)
63 PLN02661 Putative thiazole syn 99.1 6.2E-10 1.4E-14 112.3 12.2 37 76-112 88-126 (357)
64 TIGR00292 thiazole biosynthesi 99.1 3.6E-10 7.7E-15 111.1 10.1 66 251-323 106-179 (254)
65 PRK08401 L-aspartate oxidase; 99.1 5.4E-10 1.2E-14 120.6 11.5 32 81-112 2-34 (466)
66 COG0029 NadB Aspartate oxidase 99.0 1.8E-09 3.9E-14 110.9 12.5 57 251-315 139-196 (518)
67 PF01266 DAO: FAD dependent ox 99.0 7E-10 1.5E-14 115.7 9.0 59 251-324 153-211 (358)
68 KOG2404 Fumarate reductase, fl 99.0 8.5E-10 1.8E-14 106.3 8.4 55 258-321 158-213 (477)
69 COG3573 Predicted oxidoreducta 99.0 8E-09 1.7E-13 100.1 15.0 36 78-113 3-39 (552)
70 COG0579 Predicted dehydrogenas 99.0 6.5E-09 1.4E-13 107.9 13.9 65 251-328 159-223 (429)
71 PLN02464 glycerol-3-phosphate 99.0 1.9E-09 4.2E-14 119.8 10.7 65 251-324 238-304 (627)
72 PF12831 FAD_oxidored: FAD dep 99.0 2.3E-10 5E-15 122.1 2.6 59 254-325 99-157 (428)
73 PRK12266 glpD glycerol-3-phosp 98.9 6.9E-09 1.5E-13 113.1 12.3 38 77-114 3-41 (508)
74 TIGR01320 mal_quin_oxido malat 98.9 3.3E-08 7.2E-13 106.7 16.6 66 251-326 184-250 (483)
75 TIGR01373 soxB sarcosine oxida 98.9 3.5E-08 7.6E-13 105.1 15.1 35 78-112 28-65 (407)
76 PTZ00383 malate:quinone oxidor 98.9 2.2E-08 4.7E-13 107.8 12.9 61 251-326 217-283 (497)
77 PRK13369 glycerol-3-phosphate 98.8 3E-08 6.5E-13 108.2 12.9 60 251-321 161-220 (502)
78 PRK13977 myosin-cross-reactive 98.8 8.5E-08 1.8E-12 102.9 15.8 63 251-316 232-294 (576)
79 COG0644 FixC Dehydrogenases (f 98.8 2.4E-08 5.1E-13 105.8 11.1 37 79-115 2-39 (396)
80 PRK05257 malate:quinone oxidor 98.8 7.2E-08 1.6E-12 104.2 14.7 66 251-326 189-256 (494)
81 PRK10157 putative oxidoreducta 98.8 1.3E-08 2.8E-13 108.7 8.8 36 79-114 4-40 (428)
82 PTZ00363 rab-GDP dissociation 98.8 8.6E-08 1.9E-12 101.7 14.6 44 77-120 1-45 (443)
83 TIGR03329 Phn_aa_oxid putative 98.8 3.4E-08 7.4E-13 106.7 10.8 35 78-112 22-59 (460)
84 KOG2415 Electron transfer flav 98.8 2.3E-08 5E-13 99.7 8.3 69 253-325 191-268 (621)
85 PRK05192 tRNA uridine 5-carbox 98.7 3.5E-08 7.5E-13 106.9 10.3 34 79-112 3-37 (618)
86 TIGR01377 soxA_mon sarcosine o 98.7 1E-07 2.3E-12 100.5 13.5 33 81-113 1-34 (380)
87 PRK11259 solA N-methyltryptoph 98.7 9E-08 2E-12 100.8 12.6 34 79-112 2-36 (376)
88 PRK05675 sdhA succinate dehydr 98.7 9.6E-08 2.1E-12 105.5 12.9 58 251-316 132-190 (570)
89 PRK12409 D-amino acid dehydrog 98.7 8E-08 1.7E-12 102.5 11.9 33 81-113 2-35 (410)
90 PRK10015 oxidoreductase; Provi 98.7 5.2E-08 1.1E-12 104.0 10.1 36 79-114 4-40 (429)
91 PRK13339 malate:quinone oxidor 98.7 3.8E-07 8.2E-12 98.0 16.2 66 251-326 190-257 (497)
92 TIGR02730 carot_isom carotene 98.7 1.8E-07 3.8E-12 102.2 12.8 69 240-321 224-292 (493)
93 COG0578 GlpA Glycerol-3-phosph 98.6 4.4E-07 9.4E-12 96.4 13.9 64 253-327 172-236 (532)
94 PRK00711 D-amino acid dehydrog 98.6 4.7E-07 1E-11 96.8 14.3 31 82-112 2-33 (416)
95 TIGR00275 flavoprotein, HI0933 98.6 2.6E-07 5.7E-12 97.7 11.5 31 84-114 1-32 (400)
96 PRK11728 hydroxyglutarate oxid 98.6 2.3E-07 5E-12 98.3 10.9 34 80-113 2-38 (393)
97 TIGR03364 HpnW_proposed FAD de 98.6 1.7E-07 3.7E-12 98.3 8.7 32 81-112 1-33 (365)
98 KOG1298 Squalene monooxygenase 98.6 2.4E-07 5.2E-12 91.9 8.8 52 255-316 158-209 (509)
99 PRK06185 hypothetical protein; 98.5 2.1E-07 4.7E-12 99.1 9.3 35 78-112 4-39 (407)
100 COG1233 Phytoene dehydrogenase 98.5 1.6E-07 3.6E-12 101.7 8.1 38 79-116 2-40 (487)
101 KOG0042 Glycerol-3-phosphate d 98.5 1E-07 2.2E-12 98.4 5.2 59 255-321 234-294 (680)
102 PF01134 GIDA: Glucose inhibit 98.5 2.1E-07 4.6E-12 95.6 7.3 51 256-320 107-157 (392)
103 PF06039 Mqo: Malate:quinone o 98.5 2.2E-06 4.9E-11 88.3 14.5 66 251-326 187-254 (488)
104 PRK07364 2-octaprenyl-6-methox 98.5 1.1E-06 2.4E-11 93.9 12.8 38 77-114 15-53 (415)
105 PLN02172 flavin-containing mon 98.5 6.9E-07 1.5E-11 95.9 10.9 36 79-114 9-45 (461)
106 PRK07208 hypothetical protein; 98.5 1.4E-06 3.1E-11 94.8 13.6 39 78-116 2-41 (479)
107 TIGR01816 sdhA_forward succina 98.4 1.1E-06 2.5E-11 97.0 11.9 57 251-316 125-182 (565)
108 PF13738 Pyr_redox_3: Pyridine 98.4 3.9E-07 8.5E-12 87.0 7.2 56 254-323 91-146 (203)
109 PLN02985 squalene monooxygenas 98.4 2.7E-06 5.8E-11 92.7 14.1 35 78-112 41-76 (514)
110 PRK01747 mnmC bifunctional tRN 98.4 1.2E-06 2.6E-11 99.0 11.0 33 80-112 260-293 (662)
111 PRK08773 2-octaprenyl-3-methyl 98.4 2.8E-06 6.1E-11 90.0 12.0 36 78-113 4-40 (392)
112 COG3380 Predicted NAD/FAD-depe 98.4 3E-06 6.5E-11 80.6 10.4 31 82-112 3-34 (331)
113 TIGR02023 BchP-ChlP geranylger 98.3 3.1E-06 6.7E-11 89.5 11.5 31 81-111 1-32 (388)
114 TIGR00136 gidA glucose-inhibit 98.3 2.3E-06 5.1E-11 92.7 10.1 32 81-112 1-33 (617)
115 PRK08244 hypothetical protein; 98.3 4.8E-06 1.1E-10 91.0 11.9 34 80-113 2-36 (493)
116 PRK06126 hypothetical protein; 98.3 1E-05 2.2E-10 89.7 14.5 36 78-113 5-41 (545)
117 PLN02697 lycopene epsilon cycl 98.3 5.4E-06 1.2E-10 89.9 11.7 35 78-112 106-141 (529)
118 TIGR02734 crtI_fam phytoene de 98.3 1.4E-06 2.9E-11 95.6 7.3 68 241-321 215-282 (502)
119 COG2072 TrkA Predicted flavopr 98.3 9.4E-06 2E-10 86.8 13.4 38 78-115 6-45 (443)
120 COG0665 DadA Glycine/D-amino a 98.3 9.6E-06 2.1E-10 85.8 13.5 37 78-114 2-39 (387)
121 PRK06847 hypothetical protein; 98.3 7.2E-06 1.6E-10 86.3 12.4 35 79-113 3-38 (375)
122 PRK07333 2-octaprenyl-6-methox 98.3 5.5E-06 1.2E-10 88.2 11.2 33 81-113 2-37 (403)
123 COG0445 GidA Flavin-dependent 98.2 2.3E-06 5E-11 89.2 7.8 34 79-112 3-37 (621)
124 PRK07608 ubiquinone biosynthes 98.2 1E-05 2.3E-10 85.5 13.0 37 78-114 3-40 (388)
125 COG2509 Uncharacterized FAD-de 98.2 1.6E-05 3.6E-10 81.3 13.4 234 76-352 14-265 (486)
126 PRK07045 putative monooxygenas 98.2 1.3E-05 2.8E-10 84.9 12.6 37 78-114 3-40 (388)
127 KOG2820 FAD-dependent oxidored 98.2 8.2E-06 1.8E-10 80.0 9.8 39 77-115 4-43 (399)
128 TIGR01988 Ubi-OHases Ubiquinon 98.2 1.1E-05 2.5E-10 85.1 12.0 33 82-114 1-34 (385)
129 PRK06184 hypothetical protein; 98.2 1.3E-05 2.8E-10 87.8 12.7 35 80-114 3-38 (502)
130 PRK07190 hypothetical protein; 98.2 4.8E-06 1E-10 90.3 8.9 36 79-114 4-40 (487)
131 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1.4E-05 3.1E-10 88.2 12.6 37 78-114 8-45 (538)
132 TIGR03378 glycerol3P_GlpB glyc 98.2 1.8E-05 3.9E-10 82.6 12.1 60 253-323 271-330 (419)
133 KOG4254 Phytoene desaturase [C 98.1 6.8E-06 1.5E-10 83.5 8.2 72 241-325 260-331 (561)
134 TIGR01790 carotene-cycl lycope 98.1 1.1E-05 2.4E-10 85.4 10.3 32 82-113 1-33 (388)
135 PRK08243 4-hydroxybenzoate 3-m 98.1 2.3E-05 5.1E-10 83.0 12.6 34 80-113 2-36 (392)
136 PRK08013 oxidoreductase; Provi 98.1 2.9E-05 6.3E-10 82.5 13.3 34 80-113 3-37 (400)
137 PRK06834 hypothetical protein; 98.1 2.2E-05 4.7E-10 85.3 12.3 34 80-113 3-37 (488)
138 PRK11445 putative oxidoreducta 98.1 1.5E-05 3.2E-10 83.0 9.4 33 81-113 2-34 (351)
139 PF00743 FMO-like: Flavin-bind 98.0 6.9E-06 1.5E-10 89.5 6.0 34 82-115 3-37 (531)
140 COG0654 UbiH 2-polyprenyl-6-me 98.0 2.6E-05 5.5E-10 82.5 10.0 32 80-111 2-34 (387)
141 PRK08132 FAD-dependent oxidore 98.0 6.9E-05 1.5E-09 83.0 13.6 36 78-113 21-57 (547)
142 TIGR01372 soxA sarcosine oxida 98.0 0.00014 2.9E-09 85.8 16.7 66 251-326 357-422 (985)
143 PF13450 NAD_binding_8: NAD(P) 98.0 4.9E-06 1.1E-10 63.8 2.8 32 85-116 1-33 (68)
144 PRK08163 salicylate hydroxylas 98.0 4.6E-05 9.9E-10 80.9 11.2 35 79-113 3-38 (396)
145 PRK15317 alkyl hydroperoxide r 98.0 5.6E-05 1.2E-09 83.0 11.9 33 78-110 209-242 (517)
146 COG0562 Glf UDP-galactopyranos 97.9 7.7E-06 1.7E-10 79.8 4.3 37 81-117 2-39 (374)
147 KOG1399 Flavin-containing mono 97.9 2.4E-05 5.2E-10 82.7 8.3 35 80-114 6-41 (448)
148 PRK07588 hypothetical protein; 97.9 6.9E-05 1.5E-09 79.4 11.9 32 82-113 2-34 (391)
149 TIGR01421 gluta_reduc_1 glutat 97.9 6.4E-06 1.4E-10 88.7 3.6 34 79-112 1-35 (450)
150 TIGR03140 AhpF alkyl hydropero 97.9 6.3E-05 1.4E-09 82.5 11.3 33 78-110 210-243 (515)
151 KOG2960 Protein involved in th 97.9 9.2E-06 2E-10 74.2 3.8 33 80-112 76-111 (328)
152 PRK07236 hypothetical protein; 97.9 0.00011 2.5E-09 77.5 12.8 35 78-112 4-39 (386)
153 PF05834 Lycopene_cycl: Lycope 97.9 7.7E-05 1.7E-09 78.4 10.7 32 82-113 1-35 (374)
154 PRK06370 mercuric reductase; V 97.9 1E-05 2.3E-10 87.6 4.1 35 78-112 3-38 (463)
155 COG1249 Lpd Pyruvate/2-oxoglut 97.9 1E-05 2.2E-10 85.8 3.9 35 78-112 2-37 (454)
156 PLN00093 geranylgeranyl diphos 97.9 9.4E-06 2E-10 87.0 3.7 35 78-112 37-72 (450)
157 KOG2665 Predicted FAD-dependen 97.9 0.00011 2.3E-09 71.6 10.3 36 78-113 46-84 (453)
158 TIGR01424 gluta_reduc_2 glutat 97.9 9.9E-06 2.2E-10 87.2 3.7 32 80-111 2-34 (446)
159 KOG2311 NAD/FAD-utilizing prot 97.9 7.1E-05 1.5E-09 76.6 9.4 35 78-112 26-61 (679)
160 PRK05976 dihydrolipoamide dehy 97.8 1.2E-05 2.6E-10 87.3 4.1 35 78-112 2-37 (472)
161 PRK06115 dihydrolipoamide dehy 97.8 1.2E-05 2.6E-10 87.0 4.1 32 80-111 3-35 (466)
162 PRK06467 dihydrolipoamide dehy 97.8 1.3E-05 2.9E-10 86.8 4.2 37 78-114 2-39 (471)
163 PRK06116 glutathione reductase 97.8 1.3E-05 2.9E-10 86.5 3.8 34 78-111 2-36 (450)
164 PTZ00058 glutathione reductase 97.8 1.8E-05 3.8E-10 86.9 4.7 35 78-112 46-81 (561)
165 PRK05249 soluble pyridine nucl 97.8 1.5E-05 3.2E-10 86.4 4.1 37 78-114 3-40 (461)
166 PF01494 FAD_binding_3: FAD bi 97.8 1.4E-05 3E-10 83.1 3.7 35 80-114 1-36 (356)
167 TIGR02032 GG-red-SF geranylger 97.8 1.5E-05 3.2E-10 80.7 3.7 34 81-114 1-35 (295)
168 PRK07818 dihydrolipoamide dehy 97.8 1.7E-05 3.8E-10 85.9 4.1 34 79-112 3-37 (466)
169 PLN02546 glutathione reductase 97.7 2E-05 4.2E-10 86.6 3.6 33 78-110 77-110 (558)
170 PRK08010 pyridine nucleotide-d 97.7 2.3E-05 4.9E-10 84.4 3.9 34 80-113 3-37 (441)
171 PRK06416 dihydrolipoamide dehy 97.7 2.2E-05 4.7E-10 85.1 3.7 34 79-112 3-37 (462)
172 PRK08020 ubiF 2-octaprenyl-3-m 97.7 2.3E-05 4.9E-10 83.1 3.7 35 78-112 3-38 (391)
173 PRK07251 pyridine nucleotide-d 97.7 2.7E-05 5.8E-10 83.8 3.9 33 80-112 3-36 (438)
174 PRK06327 dihydrolipoamide dehy 97.7 3.5E-05 7.7E-10 83.7 4.8 33 78-110 2-35 (475)
175 PF06100 Strep_67kDa_ant: Stre 97.7 0.00075 1.6E-08 70.8 14.1 60 252-314 214-273 (500)
176 KOG2844 Dimethylglycine dehydr 97.7 0.00027 5.8E-09 75.5 10.8 59 251-324 193-251 (856)
177 PRK06292 dihydrolipoamide dehy 97.7 3.5E-05 7.6E-10 83.5 4.2 33 79-111 2-35 (460)
178 PRK09126 hypothetical protein; 97.7 3E-05 6.6E-10 82.1 3.5 34 80-113 3-37 (392)
179 PRK07494 2-octaprenyl-6-methox 97.6 3.4E-05 7.3E-10 81.7 3.8 36 78-113 5-41 (388)
180 TIGR02028 ChlP geranylgeranyl 97.6 2.7E-05 5.8E-10 82.5 3.0 32 81-112 1-33 (398)
181 PTZ00153 lipoamide dehydrogena 97.6 3.3E-05 7.2E-10 86.0 3.8 34 78-111 114-148 (659)
182 PRK07845 flavoprotein disulfid 97.6 9.5E-05 2.1E-09 80.1 7.2 31 82-112 3-34 (466)
183 TIGR00031 UDP-GALP_mutase UDP- 97.6 3.7E-05 8E-10 79.9 3.8 36 81-116 2-38 (377)
184 PLN02463 lycopene beta cyclase 97.6 4E-05 8.7E-10 81.9 3.8 35 78-112 26-61 (447)
185 COG0492 TrxB Thioredoxin reduc 97.6 3.7E-05 8E-10 77.5 3.3 34 79-112 2-37 (305)
186 PRK05868 hypothetical protein; 97.6 0.00043 9.4E-09 72.7 11.4 32 82-113 3-35 (372)
187 PRK05714 2-octaprenyl-3-methyl 97.6 3.8E-05 8.3E-10 81.8 3.5 33 80-112 2-35 (405)
188 PRK09897 hypothetical protein; 97.6 0.00042 9.2E-09 75.4 11.4 34 81-114 2-38 (534)
189 TIGR01423 trypano_reduc trypan 97.6 4.9E-05 1.1E-09 82.4 4.2 33 79-111 2-36 (486)
190 TIGR01350 lipoamide_DH dihydro 97.6 4.7E-05 1E-09 82.6 4.0 31 80-110 1-32 (461)
191 KOG2853 Possible oxidoreductas 97.6 0.00052 1.1E-08 67.6 10.5 36 79-114 85-125 (509)
192 PRK13748 putative mercuric red 97.6 4.9E-05 1.1E-09 84.6 4.0 33 79-111 97-130 (561)
193 PRK08849 2-octaprenyl-3-methyl 97.6 4.6E-05 1E-09 80.5 3.5 33 80-112 3-36 (384)
194 TIGR03143 AhpF_homolog putativ 97.6 5E-05 1.1E-09 84.0 3.6 34 79-112 3-37 (555)
195 KOG0029 Amine oxidase [Seconda 97.6 5.9E-05 1.3E-09 81.2 4.1 39 78-116 13-52 (501)
196 PLN02507 glutathione reductase 97.6 5.3E-05 1.2E-09 82.6 3.8 33 78-110 23-56 (499)
197 PRK08850 2-octaprenyl-6-methox 97.6 4.9E-05 1.1E-09 80.9 3.4 33 79-111 3-36 (405)
198 TIGR02053 MerA mercuric reduct 97.5 5.2E-05 1.1E-09 82.2 3.5 32 81-112 1-33 (463)
199 TIGR02733 desat_CrtD C-3',4' d 97.5 6.6E-05 1.4E-09 82.1 3.8 36 81-116 2-38 (492)
200 PRK14694 putative mercuric red 97.5 6.9E-05 1.5E-09 81.3 3.9 35 78-112 4-39 (468)
201 PTZ00052 thioredoxin reductase 97.5 6.9E-05 1.5E-09 81.7 3.7 33 79-111 4-37 (499)
202 PF04820 Trp_halogenase: Trypt 97.5 0.00018 3.9E-09 77.3 6.5 33 82-114 1-37 (454)
203 TIGR03377 glycerol3P_GlpA glyc 97.5 0.00054 1.2E-08 75.3 10.0 65 251-325 134-199 (516)
204 TIGR01292 TRX_reduct thioredox 97.5 8E-05 1.7E-09 75.6 3.3 32 81-112 1-33 (300)
205 TIGR02360 pbenz_hydroxyl 4-hyd 97.4 9E-05 1.9E-09 78.4 3.4 34 80-113 2-36 (390)
206 PLN02676 polyamine oxidase 97.4 0.0002 4.3E-09 77.8 6.0 38 79-116 25-64 (487)
207 PRK14727 putative mercuric red 97.4 0.00011 2.5E-09 79.8 4.0 37 78-114 14-51 (479)
208 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.00011 2.4E-09 77.5 3.6 33 82-114 1-35 (382)
209 PRK06617 2-octaprenyl-6-methox 97.4 0.0001 2.3E-09 77.5 3.2 32 81-112 2-34 (374)
210 COG2907 Predicted NAD/FAD-bind 97.4 0.0015 3.3E-08 64.8 10.8 40 79-118 7-46 (447)
211 PTZ00367 squalene epoxidase; P 97.4 0.00014 3E-09 80.0 3.9 34 79-112 32-66 (567)
212 TIGR01438 TGR thioredoxin and 97.3 0.00015 3.3E-09 78.7 3.8 32 80-111 2-34 (484)
213 PLN02268 probable polyamine ox 97.3 0.00015 3.3E-09 77.9 3.8 36 82-117 2-38 (435)
214 PRK05329 anaerobic glycerol-3- 97.3 0.00014 3.1E-09 76.8 3.3 33 80-112 2-35 (422)
215 PF13434 K_oxygenase: L-lysine 97.3 0.0013 2.9E-08 67.7 10.4 33 80-112 2-36 (341)
216 PRK05732 2-octaprenyl-6-methox 97.3 0.00016 3.4E-09 76.7 3.5 33 79-111 2-38 (395)
217 PLN02576 protoporphyrinogen ox 97.3 0.00024 5.3E-09 77.7 4.8 39 78-116 10-50 (496)
218 TIGR01989 COQ6 Ubiquinone bios 97.3 0.00016 3.4E-09 77.8 3.2 32 81-112 1-37 (437)
219 PRK06996 hypothetical protein; 97.3 0.0002 4.4E-09 76.0 3.9 35 78-112 9-48 (398)
220 KOG1335 Dihydrolipoamide dehyd 97.3 0.00026 5.6E-09 70.8 4.2 34 79-112 38-72 (506)
221 PRK11883 protoporphyrinogen ox 97.3 0.00019 4.1E-09 77.6 3.6 35 82-116 2-39 (451)
222 PRK07233 hypothetical protein; 97.3 0.0002 4.3E-09 76.9 3.7 36 82-117 1-37 (434)
223 PRK10262 thioredoxin reductase 97.2 0.00018 4E-09 73.9 3.2 34 78-111 4-38 (321)
224 COG1231 Monoamine oxidase [Ami 97.2 0.00026 5.7E-09 73.0 4.2 39 78-116 5-44 (450)
225 TIGR03452 mycothione_red mycot 97.2 0.00024 5.2E-09 76.6 4.0 32 80-112 2-33 (452)
226 TIGR01789 lycopene_cycl lycope 97.2 0.00026 5.5E-09 74.2 3.9 33 82-114 1-36 (370)
227 PRK08294 phenol 2-monooxygenas 97.2 0.00038 8.2E-09 78.0 5.1 37 77-113 29-67 (634)
228 PRK06753 hypothetical protein; 97.2 0.00023 5.1E-09 74.8 3.2 33 82-114 2-35 (373)
229 PRK07846 mycothione reductase; 97.2 0.00029 6.3E-09 75.9 3.9 32 80-112 1-32 (451)
230 PLN02568 polyamine oxidase 97.2 0.00034 7.3E-09 76.7 4.2 38 79-116 4-47 (539)
231 PF07992 Pyr_redox_2: Pyridine 97.1 0.00027 5.9E-09 67.1 3.0 31 82-112 1-32 (201)
232 KOG0405 Pyridine nucleotide-di 97.1 0.00055 1.2E-08 67.7 5.0 35 78-112 18-53 (478)
233 PRK07538 hypothetical protein; 97.1 0.00036 7.7E-09 74.5 3.2 32 82-113 2-34 (413)
234 PLN02927 antheraxanthin epoxid 97.0 0.00052 1.1E-08 76.2 4.4 36 77-112 78-114 (668)
235 PRK05335 tRNA (uracil-5-)-meth 97.0 0.00041 9E-09 72.4 3.2 34 81-114 3-37 (436)
236 COG3349 Uncharacterized conser 97.0 0.00055 1.2E-08 72.0 3.6 34 83-116 3-37 (485)
237 TIGR00562 proto_IX_ox protopor 97.0 0.00054 1.2E-08 74.3 3.7 36 81-116 3-43 (462)
238 COG1148 HdrA Heterodisulfide r 96.9 0.00078 1.7E-08 69.5 3.5 38 79-116 123-161 (622)
239 TIGR03315 Se_ygfK putative sel 96.9 0.001 2.2E-08 77.1 4.8 37 79-115 536-573 (1012)
240 KOG4716 Thioredoxin reductase 96.9 0.00084 1.8E-08 66.1 3.5 35 78-112 17-52 (503)
241 TIGR02731 phytoene_desat phyto 96.8 0.0008 1.7E-08 72.8 3.6 35 82-116 1-36 (453)
242 PRK12416 protoporphyrinogen ox 96.8 0.00079 1.7E-08 73.0 3.5 35 82-116 3-44 (463)
243 COG3075 GlpB Anaerobic glycero 96.8 0.00098 2.1E-08 65.6 3.3 34 80-113 2-36 (421)
244 KOG2614 Kynurenine 3-monooxyge 96.8 0.0012 2.6E-08 67.4 3.9 32 81-112 3-35 (420)
245 PRK12831 putative oxidoreducta 96.8 0.0013 2.8E-08 71.1 4.4 36 79-114 139-175 (464)
246 KOG2852 Possible oxidoreductas 96.8 0.0041 9E-08 60.1 7.2 63 252-325 154-217 (380)
247 PRK06912 acoL dihydrolipoamide 96.7 0.001 2.2E-08 72.1 3.2 32 82-113 2-34 (458)
248 PF13454 NAD_binding_9: FAD-NA 96.7 0.012 2.5E-07 53.5 9.6 29 84-112 1-35 (156)
249 PF00996 GDI: GDP dissociation 96.7 0.0015 3.3E-08 68.8 4.2 43 77-119 1-44 (438)
250 PRK06475 salicylate hydroxylas 96.7 0.0012 2.5E-08 70.2 3.4 32 82-113 4-36 (400)
251 TIGR00137 gid_trmFO tRNA:m(5)U 96.7 0.0012 2.7E-08 69.3 3.2 33 81-113 1-34 (433)
252 PLN02529 lysine-specific histo 96.6 0.0019 4.2E-08 72.6 4.7 38 79-116 159-197 (738)
253 PRK12810 gltD glutamate syntha 96.6 0.0019 4.2E-08 70.0 4.4 37 79-115 142-179 (471)
254 TIGR03862 flavo_PP4765 unchara 96.6 0.016 3.4E-07 60.3 10.8 88 207-319 57-145 (376)
255 PLN02328 lysine-specific histo 96.6 0.0019 4.2E-08 73.1 4.2 38 79-116 237-275 (808)
256 PLN02487 zeta-carotene desatur 96.5 0.0031 6.7E-08 69.4 5.3 64 251-320 301-365 (569)
257 COG1232 HemY Protoporphyrinoge 96.5 0.0021 4.6E-08 67.8 3.6 34 83-116 3-39 (444)
258 TIGR01316 gltA glutamate synth 96.5 0.0025 5.4E-08 68.7 4.1 36 79-114 132-168 (449)
259 PLN02612 phytoene desaturase 96.4 0.0028 6.1E-08 70.3 4.5 38 79-116 92-130 (567)
260 KOG0685 Flavin-containing amin 96.4 0.0033 7.2E-08 65.2 4.5 39 78-116 19-59 (498)
261 TIGR02732 zeta_caro_desat caro 96.4 0.0023 5.1E-08 69.3 3.6 64 251-320 225-289 (474)
262 KOG3855 Monooxygenase involved 96.4 0.003 6.4E-08 64.2 3.8 35 78-112 34-73 (481)
263 PRK12779 putative bifunctional 96.3 0.0026 5.7E-08 74.2 3.6 37 80-116 306-343 (944)
264 TIGR03219 salicylate_mono sali 96.3 0.0028 6.2E-08 67.6 3.6 32 82-113 2-35 (414)
265 PRK12778 putative bifunctional 96.3 0.004 8.7E-08 71.7 4.9 36 78-113 429-465 (752)
266 PF00070 Pyr_redox: Pyridine n 96.3 0.0041 8.8E-08 49.3 3.5 32 83-114 2-34 (80)
267 PRK12769 putative oxidoreducta 96.3 0.0033 7.2E-08 71.1 4.0 37 79-115 326-363 (654)
268 PRK09853 putative selenate red 96.3 0.0032 6.9E-08 72.8 3.7 38 79-116 538-576 (1019)
269 PRK11749 dihydropyrimidine deh 96.2 0.0037 8E-08 67.7 3.9 36 79-114 139-175 (457)
270 TIGR02352 thiamin_ThiO glycine 96.2 0.012 2.7E-07 60.6 7.6 54 251-319 143-196 (337)
271 PRK12775 putative trifunctiona 96.2 0.0033 7.2E-08 74.0 3.7 36 80-115 430-466 (1006)
272 PLN02852 ferredoxin-NADP+ redu 96.2 0.0049 1.1E-07 66.4 4.7 38 79-116 25-65 (491)
273 TIGR01350 lipoamide_DH dihydro 96.2 0.024 5.1E-07 61.5 10.1 32 81-112 171-203 (461)
274 KOG2403 Succinate dehydrogenas 96.1 0.0057 1.2E-07 64.3 4.2 34 79-112 54-88 (642)
275 PRK07818 dihydrolipoamide dehy 96.1 0.035 7.5E-07 60.3 10.3 31 82-112 174-205 (466)
276 PRK04965 NADH:flavorubredoxin 96.0 0.047 1E-06 57.5 10.9 57 256-326 194-250 (377)
277 PLN03000 amine oxidase 96.0 0.0059 1.3E-07 69.4 3.9 39 79-117 183-222 (881)
278 PRK05976 dihydrolipoamide dehy 96.0 0.031 6.6E-07 60.8 9.4 32 81-112 181-213 (472)
279 PRK12814 putative NADPH-depend 95.9 0.009 1.9E-07 67.5 5.0 36 79-114 192-228 (652)
280 COG4529 Uncharacterized protei 95.9 0.071 1.5E-06 56.0 11.0 33 81-113 2-38 (474)
281 PRK06327 dihydrolipoamide dehy 95.9 0.039 8.6E-07 60.0 9.8 31 82-112 185-216 (475)
282 PLN02976 amine oxidase 95.8 0.0078 1.7E-07 71.0 3.9 38 79-116 692-730 (1713)
283 PRK09754 phenylpropionate diox 95.8 0.047 1E-06 57.9 9.7 31 82-112 146-177 (396)
284 PRK12770 putative glutamate sy 95.8 0.0079 1.7E-07 62.7 3.7 35 80-114 18-53 (352)
285 PRK08255 salicylyl-CoA 5-hydro 95.7 0.0066 1.4E-07 69.8 3.3 32 82-113 2-36 (765)
286 PRK15317 alkyl hydroperoxide r 95.7 0.095 2E-06 57.7 12.2 57 258-323 400-457 (517)
287 PRK14989 nitrite reductase sub 95.7 0.056 1.2E-06 62.7 10.7 59 255-325 197-255 (847)
288 TIGR01318 gltD_gamma_fam gluta 95.7 0.0086 1.9E-07 64.9 3.9 36 79-114 140-176 (467)
289 TIGR03140 AhpF alkyl hydropero 95.7 0.092 2E-06 57.7 11.9 55 258-321 401-456 (515)
290 TIGR01316 gltA glutamate synth 95.6 0.095 2.1E-06 56.5 11.2 31 82-112 274-305 (449)
291 TIGR01317 GOGAT_sm_gam glutama 95.5 0.012 2.6E-07 64.1 4.1 35 80-114 143-178 (485)
292 TIGR02374 nitri_red_nirB nitri 95.5 0.065 1.4E-06 62.0 10.2 57 255-325 192-248 (785)
293 PRK09564 coenzyme A disulfide 95.5 0.074 1.6E-06 57.3 10.0 32 81-112 150-182 (444)
294 TIGR02053 MerA mercuric reduct 95.5 0.062 1.3E-06 58.3 9.4 32 81-112 167-199 (463)
295 PRK12809 putative oxidoreducta 95.5 0.011 2.4E-07 66.7 3.6 36 80-115 310-346 (639)
296 PRK12831 putative oxidoreducta 95.5 0.076 1.6E-06 57.5 10.0 31 82-112 283-314 (464)
297 TIGR01292 TRX_reduct thioredox 95.5 0.14 3.1E-06 51.6 11.6 56 258-323 190-246 (300)
298 PTZ00188 adrenodoxin reductase 95.4 0.019 4.2E-07 61.1 5.2 37 80-116 39-77 (506)
299 PRK06567 putative bifunctional 95.4 0.012 2.6E-07 67.5 3.6 34 79-112 382-416 (1028)
300 TIGR02374 nitri_red_nirB nitri 95.4 0.057 1.2E-06 62.4 9.0 32 83-114 1-36 (785)
301 KOG1276 Protoporphyrinogen oxi 95.3 0.022 4.7E-07 58.4 4.7 39 78-116 9-50 (491)
302 COG3634 AhpF Alkyl hydroperoxi 95.3 0.011 2.3E-07 58.8 2.4 58 257-323 402-460 (520)
303 PRK12771 putative glutamate sy 95.3 0.014 3E-07 64.9 3.7 36 80-115 137-173 (564)
304 TIGR03197 MnmC_Cterm tRNA U-34 95.3 0.1 2.2E-06 55.0 10.0 53 251-319 141-193 (381)
305 PRK06416 dihydrolipoamide dehy 95.2 0.1 2.3E-06 56.5 10.2 31 82-112 174-205 (462)
306 PRK06467 dihydrolipoamide dehy 95.1 0.092 2E-06 57.0 9.4 31 82-112 176-207 (471)
307 PRK10262 thioredoxin reductase 95.1 0.2 4.4E-06 51.3 11.6 61 255-325 195-257 (321)
308 PRK06370 mercuric reductase; V 95.1 0.093 2E-06 56.9 9.4 32 81-112 172-204 (463)
309 PRK05249 soluble pyridine nucl 95.1 0.096 2.1E-06 56.7 9.4 32 81-112 176-208 (461)
310 PRK06116 glutathione reductase 94.9 0.11 2.3E-06 56.2 9.3 32 81-112 168-200 (450)
311 TIGR01421 gluta_reduc_1 glutat 94.9 0.11 2.4E-06 56.0 9.0 31 82-112 168-199 (450)
312 TIGR03385 CoA_CoA_reduc CoA-di 94.8 0.19 4.1E-06 53.8 10.6 31 82-112 139-170 (427)
313 PRK13984 putative oxidoreducta 94.7 0.03 6.4E-07 62.9 4.4 37 79-115 282-319 (604)
314 COG1249 Lpd Pyruvate/2-oxoglut 94.7 0.2 4.3E-06 53.6 10.2 32 82-113 175-207 (454)
315 PRK07846 mycothione reductase; 94.6 0.19 4E-06 54.3 9.9 32 81-112 167-199 (451)
316 PRK07845 flavoprotein disulfid 94.5 0.21 4.5E-06 54.2 10.2 31 82-112 179-210 (466)
317 KOG1439 RAB proteins geranylge 94.5 0.023 5E-07 57.7 2.4 41 78-118 2-43 (440)
318 PRK06115 dihydrolipoamide dehy 94.5 0.21 4.5E-06 54.2 10.0 32 81-112 175-207 (466)
319 PRK09564 coenzyme A disulfide 94.4 0.031 6.7E-07 60.3 3.5 58 253-325 199-256 (444)
320 PRK09754 phenylpropionate diox 94.4 0.034 7.3E-07 59.0 3.6 59 252-325 193-251 (396)
321 PRK13512 coenzyme A disulfide 94.3 0.034 7.4E-07 59.8 3.5 33 82-114 3-38 (438)
322 KOG4405 GDP dissociation inhib 94.3 0.047 1E-06 55.5 4.0 41 78-118 6-47 (547)
323 PLN02507 glutathione reductase 94.2 0.25 5.3E-06 54.1 10.0 31 82-112 205-236 (499)
324 COG4716 Myosin-crossreactive a 94.1 0.12 2.6E-06 52.1 6.4 60 251-315 233-292 (587)
325 TIGR01424 gluta_reduc_2 glutat 93.8 0.27 5.8E-06 53.0 9.2 31 82-112 168-199 (446)
326 KOG1800 Ferredoxin/adrenodoxin 93.8 0.067 1.4E-06 54.1 4.0 36 81-116 21-59 (468)
327 PTZ00318 NADH dehydrogenase-li 93.4 0.066 1.4E-06 57.3 3.7 36 79-114 9-45 (424)
328 PRK14727 putative mercuric red 93.3 0.38 8.1E-06 52.4 9.3 30 82-111 190-220 (479)
329 PTZ00058 glutathione reductase 93.2 0.43 9.3E-06 52.8 9.7 31 82-112 239-270 (561)
330 PRK11749 dihydropyrimidine deh 93.2 0.5 1.1E-05 51.1 10.0 31 82-112 275-307 (457)
331 COG5044 MRS6 RAB proteins gera 92.8 0.17 3.6E-06 51.1 5.0 39 80-118 6-45 (434)
332 COG0493 GltD NADPH-dependent g 92.8 0.099 2.1E-06 55.9 3.7 36 81-116 124-160 (457)
333 TIGR01423 trypano_reduc trypan 92.7 0.49 1.1E-05 51.5 9.2 53 255-320 241-293 (486)
334 COG1206 Gid NAD(FAD)-utilizing 92.6 0.1 2.2E-06 51.8 3.1 32 82-113 5-37 (439)
335 PRK12769 putative oxidoreducta 92.4 0.64 1.4E-05 52.8 9.9 31 82-112 470-502 (654)
336 TIGR03169 Nterm_to_SelD pyridi 92.2 0.13 2.9E-06 53.7 3.8 34 82-115 1-38 (364)
337 PRK12778 putative bifunctional 92.2 0.74 1.6E-05 53.2 10.2 31 82-112 572-604 (752)
338 TIGR01318 gltD_gamma_fam gluta 92.1 0.77 1.7E-05 49.8 9.7 32 81-112 283-316 (467)
339 PRK04965 NADH:flavorubredoxin 92.0 0.12 2.6E-06 54.3 3.3 33 81-113 3-38 (377)
340 KOG3851 Sulfide:quinone oxidor 91.9 0.15 3.2E-06 50.5 3.4 42 78-119 37-81 (446)
341 COG3634 AhpF Alkyl hydroperoxi 91.9 1.6 3.4E-05 44.0 10.4 32 81-112 355-387 (520)
342 KOG1336 Monodehydroascorbate/f 91.8 0.6 1.3E-05 49.0 7.8 57 254-322 264-320 (478)
343 KOG2755 Oxidoreductase [Genera 91.3 0.14 3E-06 49.2 2.5 32 83-114 2-36 (334)
344 PRK05329 anaerobic glycerol-3- 90.9 0.52 1.1E-05 50.1 6.6 59 251-320 265-323 (422)
345 KOG0404 Thioredoxin reductase 90.8 0.2 4.4E-06 46.9 3.0 34 79-112 7-41 (322)
346 KOG0399 Glutamate synthase [Am 90.6 0.36 7.7E-06 55.3 5.2 38 79-116 1784-1822(2142)
347 COG0446 HcaD Uncharacterized N 90.6 0.2 4.3E-06 53.1 3.3 34 81-114 137-171 (415)
348 PRK12779 putative bifunctional 90.1 2.1 4.6E-05 50.4 11.3 31 82-112 449-480 (944)
349 COG1252 Ndh NADH dehydrogenase 89.1 0.38 8.2E-06 50.4 3.7 37 82-118 5-44 (405)
350 TIGR02731 phytoene_desat phyto 88.8 0.75 1.6E-05 49.7 6.0 55 251-313 219-274 (453)
351 TIGR02733 desat_CrtD C-3',4' d 88.8 0.71 1.5E-05 50.5 5.9 70 241-319 228-298 (492)
352 PRK06567 putative bifunctional 88.7 1.3 2.7E-05 51.5 7.8 59 253-319 648-732 (1028)
353 COG0569 TrkA K+ transport syst 88.3 0.42 9E-06 46.2 3.2 31 82-112 2-33 (225)
354 PRK12775 putative trifunctiona 88.2 3.3 7.1E-05 49.3 11.2 58 256-321 620-692 (1006)
355 COG1252 Ndh NADH dehydrogenase 88.0 0.37 8E-06 50.4 2.8 34 81-114 156-203 (405)
356 PF02558 ApbA: Ketopantoate re 87.4 0.5 1.1E-05 42.3 3.0 30 83-112 1-31 (151)
357 PF13434 K_oxygenase: L-lysine 87.0 3.8 8.2E-05 42.4 9.6 35 78-112 188-225 (341)
358 PF03721 UDPG_MGDP_dh_N: UDP-g 86.6 0.69 1.5E-05 43.2 3.5 30 83-112 3-33 (185)
359 PRK07251 pyridine nucleotide-d 86.1 0.63 1.4E-05 50.0 3.4 32 82-113 159-191 (438)
360 PF01210 NAD_Gly3P_dh_N: NAD-d 86.0 0.51 1.1E-05 42.8 2.2 30 83-112 2-32 (157)
361 PRK06912 acoL dihydrolipoamide 84.7 0.81 1.8E-05 49.5 3.5 32 82-113 172-204 (458)
362 COG3486 IucD Lysine/ornithine 84.3 1.2 2.6E-05 46.0 4.1 37 78-114 3-41 (436)
363 PRK14989 nitrite reductase sub 84.0 0.99 2.1E-05 52.5 3.9 34 82-115 5-43 (847)
364 PF13738 Pyr_redox_3: Pyridine 83.6 0.96 2.1E-05 42.6 3.1 32 81-112 168-200 (203)
365 TIGR02732 zeta_caro_desat caro 83.5 1.9 4.1E-05 46.9 5.7 35 82-116 1-36 (474)
366 PRK01438 murD UDP-N-acetylmura 82.9 1.4 2.9E-05 48.1 4.3 31 82-112 18-49 (480)
367 PRK02705 murD UDP-N-acetylmura 82.5 1 2.2E-05 48.8 3.1 31 83-113 3-34 (459)
368 PRK05708 2-dehydropantoate 2-r 82.2 1.1 2.5E-05 45.4 3.2 31 82-112 4-35 (305)
369 PRK13512 coenzyme A disulfide 82.2 1.1 2.3E-05 48.2 3.2 31 82-112 150-181 (438)
370 PF02737 3HCDH_N: 3-hydroxyacy 81.9 1.1 2.4E-05 41.6 2.7 30 83-112 2-32 (180)
371 PF01593 Amino_oxidase: Flavin 81.4 1 2.3E-05 47.6 2.7 28 90-117 1-29 (450)
372 PRK06292 dihydrolipoamide dehy 81.2 1.2 2.7E-05 48.1 3.2 32 82-113 171-203 (460)
373 TIGR03452 mycothione_red mycot 81.0 1.3 2.8E-05 47.9 3.2 32 81-112 170-202 (452)
374 PF02254 TrkA_N: TrkA-N domain 80.7 1.5 3.2E-05 37.2 2.9 30 83-112 1-31 (116)
375 COG0281 SfcA Malic enzyme [Ene 80.3 2.7 5.8E-05 43.7 5.0 35 79-113 198-236 (432)
376 PLN02487 zeta-carotene desatur 80.3 2.8 6E-05 46.5 5.5 38 79-116 74-112 (569)
377 PRK06249 2-dehydropantoate 2-r 80.1 1.6 3.4E-05 44.6 3.4 31 82-112 7-38 (313)
378 cd05311 NAD_bind_2_malic_enz N 79.8 2.5 5.5E-05 40.8 4.5 31 82-112 27-61 (226)
379 PRK04148 hypothetical protein; 79.7 1.8 3.8E-05 37.8 3.0 30 82-112 19-49 (134)
380 PRK14106 murD UDP-N-acetylmura 79.7 1.5 3.3E-05 47.3 3.2 32 81-112 6-38 (450)
381 TIGR03143 AhpF_homolog putativ 79.5 1.6 3.4E-05 48.5 3.4 31 82-112 145-176 (555)
382 PF13241 NAD_binding_7: Putati 79.4 1.2 2.6E-05 37.1 1.8 32 80-111 7-39 (103)
383 PF01488 Shikimate_DH: Shikima 78.9 1.7 3.7E-05 38.2 2.8 32 80-111 12-45 (135)
384 PTZ00153 lipoamide dehydrogena 78.9 1.7 3.7E-05 49.0 3.4 32 82-113 314-346 (659)
385 PRK12921 2-dehydropantoate 2-r 78.7 1.7 3.7E-05 44.1 3.1 28 83-110 3-31 (305)
386 KOG1335 Dihydrolipoamide dehyd 78.2 7.3 0.00016 40.0 7.1 31 82-112 213-244 (506)
387 PRK06522 2-dehydropantoate 2-r 78.0 1.9 4.1E-05 43.7 3.2 29 83-111 3-32 (304)
388 COG1004 Ugd Predicted UDP-gluc 77.6 2.1 4.6E-05 44.1 3.3 31 82-112 2-33 (414)
389 PRK06129 3-hydroxyacyl-CoA deh 77.3 1.8 4E-05 44.0 2.8 31 82-112 4-35 (308)
390 PLN02546 glutathione reductase 77.3 2 4.3E-05 47.6 3.3 32 82-113 254-286 (558)
391 PRK08010 pyridine nucleotide-d 77.0 3.6 7.7E-05 44.3 5.1 33 82-114 160-193 (441)
392 PRK06719 precorrin-2 dehydroge 76.9 2.2 4.9E-05 38.5 3.0 29 81-109 14-43 (157)
393 PRK13748 putative mercuric red 76.6 2.1 4.5E-05 47.7 3.3 30 82-111 272-302 (561)
394 PRK06718 precorrin-2 dehydroge 76.4 2.3 4.9E-05 40.3 3.0 30 81-110 11-41 (202)
395 PF01262 AlaDh_PNT_C: Alanine 75.6 2.4 5.2E-05 38.8 2.9 33 80-112 20-53 (168)
396 cd05312 NAD_bind_1_malic_enz N 75.5 4.5 9.8E-05 40.1 4.8 34 80-113 25-70 (279)
397 TIGR00518 alaDH alanine dehydr 75.4 2.4 5.1E-05 44.4 3.1 33 80-112 167-200 (370)
398 PRK14694 putative mercuric red 75.0 2.5 5.3E-05 45.9 3.2 30 82-111 180-210 (468)
399 TIGR01470 cysG_Nterm siroheme 74.7 2.6 5.7E-05 40.0 3.0 30 82-111 11-41 (205)
400 PRK12770 putative glutamate sy 74.6 2.6 5.6E-05 43.8 3.2 31 82-112 174-206 (352)
401 PLN02612 phytoene desaturase 73.5 4.4 9.6E-05 45.1 4.8 51 251-313 314-364 (567)
402 PRK08293 3-hydroxybutyryl-CoA 73.4 2.9 6.3E-05 42.0 3.1 31 82-112 5-36 (287)
403 COG2072 TrkA Predicted flavopr 73.4 3.7 8E-05 44.1 4.0 33 82-114 177-210 (443)
404 cd01075 NAD_bind_Leu_Phe_Val_D 73.0 3.1 6.6E-05 39.4 2.9 30 82-111 30-60 (200)
405 TIGR01438 TGR thioredoxin and 72.6 2.8 6E-05 45.7 2.9 30 82-111 182-212 (484)
406 PRK09260 3-hydroxybutyryl-CoA 72.6 2.9 6.4E-05 42.0 2.9 30 83-112 4-34 (288)
407 KOG2495 NADH-dehydrogenase (ub 72.5 2 4.3E-05 44.6 1.6 33 81-113 219-266 (491)
408 PRK15116 sulfur acceptor prote 72.2 3.2 7E-05 41.1 2.9 33 80-112 30-64 (268)
409 cd00762 NAD_bind_malic_enz NAD 72.2 4.8 0.0001 39.2 4.1 33 80-112 25-69 (254)
410 PLN02172 flavin-containing mon 72.1 3.9 8.4E-05 44.2 3.8 31 82-112 206-237 (461)
411 PRK12548 shikimate 5-dehydroge 72.0 3.2 7E-05 41.8 3.0 31 82-112 128-160 (289)
412 cd00401 AdoHcyase S-adenosyl-L 71.9 3.3 7.2E-05 43.7 3.2 32 81-112 203-235 (413)
413 PTZ00318 NADH dehydrogenase-li 71.7 3.4 7.3E-05 44.2 3.3 32 82-113 175-221 (424)
414 COG0686 Ald Alanine dehydrogen 71.5 3.9 8.4E-05 40.7 3.3 34 79-112 167-201 (371)
415 PF00899 ThiF: ThiF family; I 71.4 3.7 8.1E-05 35.9 2.9 32 81-112 3-36 (135)
416 PRK08229 2-dehydropantoate 2-r 71.3 3.5 7.5E-05 42.6 3.2 30 82-111 4-34 (341)
417 PTZ00052 thioredoxin reductase 71.1 3.3 7.2E-05 45.3 3.1 30 82-111 184-214 (499)
418 PRK12549 shikimate 5-dehydroge 71.0 3.6 7.7E-05 41.3 3.0 32 81-112 128-161 (284)
419 PRK07233 hypothetical protein; 70.5 5.3 0.00011 42.6 4.5 66 241-320 194-259 (434)
420 cd01080 NAD_bind_m-THF_DH_Cycl 70.5 5 0.00011 36.7 3.6 33 79-111 43-77 (168)
421 PRK07066 3-hydroxybutyryl-CoA 70.4 4 8.7E-05 41.6 3.3 30 83-112 10-40 (321)
422 TIGR02354 thiF_fam2 thiamine b 69.6 4.2 9.1E-05 38.4 3.0 32 80-111 21-54 (200)
423 PRK07819 3-hydroxybutyryl-CoA 69.6 3.9 8.4E-05 41.1 3.0 31 82-112 7-38 (286)
424 PRK14620 NAD(P)H-dependent gly 68.4 4.2 9.1E-05 41.7 3.0 29 83-111 3-32 (326)
425 KOG3923 D-aspartate oxidase [A 68.2 3.5 7.5E-05 40.8 2.1 33 80-112 3-43 (342)
426 PRK12475 thiamine/molybdopteri 68.0 4.3 9.3E-05 41.8 3.0 33 80-112 24-58 (338)
427 PRK06035 3-hydroxyacyl-CoA deh 68.0 4.4 9.6E-05 40.8 3.1 30 83-112 6-36 (291)
428 PRK07688 thiamine/molybdopteri 67.8 4.5 9.7E-05 41.7 3.0 33 80-112 24-58 (339)
429 PF13478 XdhC_C: XdhC Rossmann 67.7 6 0.00013 34.8 3.4 31 83-113 1-32 (136)
430 KOG1346 Programmed cell death 67.6 31 0.00068 35.9 8.8 144 70-321 168-315 (659)
431 PRK07530 3-hydroxybutyryl-CoA 67.6 4.6 9.9E-05 40.7 3.1 31 82-112 6-37 (292)
432 COG1893 ApbA Ketopantoate redu 67.5 4.8 0.0001 40.9 3.1 30 83-112 3-33 (307)
433 PRK12810 gltD glutamate syntha 67.3 12 0.00025 40.7 6.4 64 253-325 337-411 (471)
434 PRK02472 murD UDP-N-acetylmura 67.3 4.2 9.1E-05 43.8 2.9 30 83-112 8-38 (447)
435 TIGR00936 ahcY adenosylhomocys 67.3 4.9 0.00011 42.3 3.2 32 81-112 196-228 (406)
436 TIGR03026 NDP-sugDHase nucleot 67.3 5.5 0.00012 42.4 3.7 30 83-112 3-33 (411)
437 KOG2018 Predicted dinucleotide 66.7 5.7 0.00012 39.4 3.3 31 80-111 75-107 (430)
438 TIGR02853 spore_dpaA dipicolin 66.6 4.8 0.0001 40.4 2.9 32 81-112 152-184 (287)
439 COG1748 LYS9 Saccharopine dehy 66.5 5.7 0.00012 41.4 3.4 31 82-112 3-35 (389)
440 PF03949 Malic_M: Malic enzyme 66.2 6.5 0.00014 38.4 3.6 34 80-113 25-70 (255)
441 cd01483 E1_enzyme_family Super 65.8 5.5 0.00012 35.2 2.9 30 83-112 2-33 (143)
442 PRK14618 NAD(P)H-dependent gly 65.6 5.4 0.00012 41.0 3.2 31 82-112 6-37 (328)
443 PRK11064 wecC UDP-N-acetyl-D-m 64.9 6 0.00013 42.1 3.4 31 82-112 5-36 (415)
444 PRK08328 hypothetical protein; 64.9 5.6 0.00012 38.6 2.9 32 80-111 27-60 (231)
445 TIGR01763 MalateDH_bact malate 64.8 6 0.00013 40.2 3.3 30 82-111 3-34 (305)
446 cd01487 E1_ThiF_like E1_ThiF_l 64.8 6.3 0.00014 36.3 3.1 30 83-112 2-33 (174)
447 TIGR02355 moeB molybdopterin s 64.5 7.6 0.00016 37.9 3.8 35 79-113 23-59 (240)
448 PRK05808 3-hydroxybutyryl-CoA 64.5 5.4 0.00012 40.0 2.8 31 82-112 5-36 (282)
449 PLN02520 bifunctional 3-dehydr 64.4 5.5 0.00012 43.9 3.1 30 82-111 381-411 (529)
450 TIGR01381 E1_like_apg7 E1-like 63.9 6.3 0.00014 43.6 3.3 39 80-118 338-378 (664)
451 cd05292 LDH_2 A subgroup of L- 63.7 6.6 0.00014 40.0 3.3 31 82-112 2-35 (308)
452 PRK14027 quinate/shikimate deh 63.4 6.5 0.00014 39.4 3.1 31 82-112 129-161 (283)
453 PRK09424 pntA NAD(P) transhydr 63.2 6 0.00013 43.0 3.1 33 80-112 165-198 (509)
454 PRK06130 3-hydroxybutyryl-CoA 62.9 6.4 0.00014 40.1 3.1 31 82-112 6-37 (311)
455 PLN02494 adenosylhomocysteinas 62.8 7 0.00015 41.8 3.4 32 81-112 255-287 (477)
456 PLN02353 probable UDP-glucose 62.7 6.9 0.00015 42.3 3.4 31 82-112 3-36 (473)
457 cd05291 HicDH_like L-2-hydroxy 62.5 7 0.00015 39.7 3.3 30 83-112 3-35 (306)
458 TIGR03736 PRTRC_ThiF PRTRC sys 62.4 7.4 0.00016 37.9 3.2 33 79-111 10-54 (244)
459 PRK05476 S-adenosyl-L-homocyst 62.1 6.8 0.00015 41.6 3.1 31 82-112 214-245 (425)
460 PRK12550 shikimate 5-dehydroge 61.7 6.9 0.00015 38.9 3.0 31 82-112 124-156 (272)
461 PTZ00317 NADP-dependent malic 61.7 13 0.00029 40.4 5.3 34 80-113 297-342 (559)
462 TIGR02356 adenyl_thiF thiazole 61.5 7 0.00015 37.0 2.9 34 79-112 20-55 (202)
463 PRK00094 gpsA NAD(P)H-dependen 61.0 7.3 0.00016 39.8 3.1 31 82-112 3-34 (325)
464 cd00757 ThiF_MoeB_HesA_family 61.0 7.1 0.00015 37.7 2.9 33 80-112 21-55 (228)
465 PRK10669 putative cation:proto 60.9 8.9 0.00019 42.6 4.0 33 80-112 417-450 (558)
466 cd01486 Apg7 Apg7 is an E1-lik 60.8 8.4 0.00018 38.7 3.3 32 83-114 2-35 (307)
467 PF00670 AdoHcyase_NAD: S-aden 60.7 5.9 0.00013 35.8 2.0 31 82-112 25-56 (162)
468 TIGR00507 aroE shikimate 5-deh 60.3 8.1 0.00018 38.4 3.2 31 82-112 119-150 (270)
469 PRK08644 thiamine biosynthesis 60.2 7.8 0.00017 37.0 3.0 33 80-112 28-62 (212)
470 PRK08306 dipicolinate synthase 60.0 7.9 0.00017 39.1 3.1 32 81-112 153-185 (296)
471 PLN02545 3-hydroxybutyryl-CoA 59.9 8.1 0.00018 39.0 3.2 30 83-112 7-37 (295)
472 PRK08223 hypothetical protein; 59.8 8.2 0.00018 38.5 3.1 34 79-112 26-61 (287)
473 PRK06153 hypothetical protein; 59.5 9.5 0.00021 39.6 3.6 33 80-112 176-210 (393)
474 PRK05690 molybdopterin biosynt 59.5 8.2 0.00018 37.8 3.0 34 79-112 31-66 (245)
475 PRK13529 malate dehydrogenase; 59.5 14 0.00031 40.2 5.1 33 81-113 296-340 (563)
476 cd05191 NAD_bind_amino_acid_DH 59.4 9.7 0.00021 30.3 3.0 29 82-110 25-55 (86)
477 PRK07232 bifunctional malic en 59.4 12 0.00027 42.5 4.8 35 80-114 185-223 (752)
478 PRK15057 UDP-glucose 6-dehydro 59.4 8.6 0.00019 40.5 3.3 30 83-112 3-32 (388)
479 PRK08017 oxidoreductase; Provi 59.0 9.5 0.00021 37.2 3.5 30 83-112 5-36 (256)
480 TIGR01809 Shik-DH-AROM shikima 59.0 8.8 0.00019 38.5 3.2 31 81-111 126-158 (282)
481 TIGR01915 npdG NADPH-dependent 58.8 9.1 0.0002 36.7 3.2 30 83-112 3-34 (219)
482 PRK09496 trkA potassium transp 58.4 8.3 0.00018 41.5 3.2 31 82-112 2-33 (453)
483 PRK12862 malic enzyme; Reviewe 58.3 12 0.00026 43.0 4.4 35 80-114 193-231 (763)
484 PTZ00075 Adenosylhomocysteinas 58.1 9.1 0.0002 41.0 3.3 31 82-112 256-287 (476)
485 cd01484 E1-2_like Ubiquitin ac 57.9 9 0.0002 37.2 3.0 30 83-112 2-33 (234)
486 cd01485 E1-1_like Ubiquitin ac 57.6 10 0.00022 35.8 3.2 33 80-112 19-53 (198)
487 PRK04308 murD UDP-N-acetylmura 57.5 9.5 0.00021 41.0 3.4 31 82-112 7-38 (445)
488 PRK00258 aroE shikimate 5-dehy 57.4 8.9 0.00019 38.3 3.0 32 81-112 124-157 (278)
489 COG1179 Dinucleotide-utilizing 56.9 13 0.00029 35.7 3.8 39 80-118 30-70 (263)
490 PRK14619 NAD(P)H-dependent gly 56.6 10 0.00022 38.6 3.2 31 82-112 6-37 (308)
491 COG0169 AroE Shikimate 5-dehyd 55.5 11 0.00024 37.6 3.2 32 81-112 127-160 (283)
492 PRK12861 malic enzyme; Reviewe 55.4 13 0.00028 42.4 4.1 36 79-114 188-227 (764)
493 cd01078 NAD_bind_H4MPT_DH NADP 55.4 11 0.00024 35.2 3.1 31 81-111 29-61 (194)
494 TIGR01317 GOGAT_sm_gam glutama 55.1 11 0.00024 41.1 3.4 32 82-113 285-318 (485)
495 cd01492 Aos1_SUMO Ubiquitin ac 55.1 12 0.00026 35.3 3.2 33 80-112 21-55 (197)
496 PRK06505 enoyl-(acyl carrier p 54.8 13 0.00027 37.0 3.6 29 83-111 10-42 (271)
497 PLN03129 NADP-dependent malic 54.8 18 0.00038 39.7 4.8 33 80-112 321-366 (581)
498 PRK05562 precorrin-2 dehydroge 54.5 11 0.00025 36.1 3.0 29 81-109 26-55 (223)
499 TIGR00561 pntA NAD(P) transhyd 54.5 11 0.00023 41.1 3.1 32 81-112 165-197 (511)
500 PRK01710 murD UDP-N-acetylmura 54.4 11 0.00024 40.8 3.2 31 82-112 16-47 (458)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=6.4e-89 Score=740.92 Aligned_cols=563 Identities=78% Similarity=1.262 Sum_probs=415.2
Q ss_pred cccccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEECCCCchHHHHHhhhccCeeeEeecCCCCCCCCcch
Q 007210 42 NLYKYRYPFIKEASSFTSPPPPSSSSFSPRNGDHHHHSAFDYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDVNVS 121 (612)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIVVGsG~aG~~aA~~Laeg~~VlvLEkG~~~~~~~~~~ 121 (612)
.-+.+.|+|+..+...+.... +.. . ...+.+|||||||+|.+||++|.+|+++.+|||||+|+....++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~----~~~--~--~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~ 96 (587)
T PLN02785 25 HFTPYRYPFIDKASSFSSSSS----SSS--S--SGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVS 96 (587)
T ss_pred cCCccCCchhhcccccccccc----ccc--c--ccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhh
Confidence 345667889888776544110 000 1 11234699999999999999999999988999999998654444444
Q ss_pred hHHHHHHHhcCCCCCCccccccCCCceeecccceecccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCC
Q 007210 122 FLQNFHMTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPK 201 (612)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 201 (612)
....+.....++.+.+..|....++.+.++|||+|||+|.+|+|+|.|+++++++..||+|+.+.++|++.|+.....|.
T Consensus 97 ~~~~~~~~~~d~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~ 176 (587)
T PLN02785 97 FLENFHIGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPK 176 (587)
T ss_pred hHHhhCCcccccCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCC
Confidence 43333333445666666777777888999999999999999999999999999988899999999999999987655666
Q ss_pred CchhHHHHHHHHHHcCCCCCCCCcccCCCceecceeEECCCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCe
Q 007210 202 QEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPK 281 (612)
Q Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~ 281 (612)
..++...+.+++.++|+++++++..+...|...+.++++..|.|+++..+++.+.+.|++|++++.|+||++++++...+
T Consensus 177 ~~~~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~r 256 (587)
T PLN02785 177 VAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSGKRPR 256 (587)
T ss_pred cChHHHHHHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCce
Confidence 77889999999999999888876666666666666776778999998887777788999999999999999986432248
Q ss_pred EEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCCChhhhhhCCceeeecCcccccccccCCCceEEeec
Q 007210 282 AVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPS 361 (612)
Q Consensus 282 v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~~~~L~~~GI~~~~~~p~VG~nl~dh~~~~~~~~~ 361 (612)
++||++.+.+|+.++++....++|+||||||+|+||+|||+|||||+++|+++||+++.|+|+||+||+|||...+.+..
T Consensus 257 a~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~ 336 (587)
T PLN02785 257 ATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPS 336 (587)
T ss_pred EEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEe
Confidence 99999987778765543221256899999999999999999999999999999999999999999999999999888877
Q ss_pred CCCccchhhhhhccchhhhHHHhccCCCCCCCcccccccchhccccccccCCCCCCChHHHHHHhhhccCCCCCccccee
Q 007210 362 NRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGF 441 (612)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
+.+......+.++....+.|.....++......+...++.+....+.+...++....++.+..+......++...+..++
T Consensus 337 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (587)
T PLN02785 337 KAPVEQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGF 416 (587)
T ss_pred CCCchhhhHhhhhhhccccceecccccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccce
Confidence 65543222222222222223221122211100000111111111111112222222233222222111111111122234
Q ss_pred EEEeecCCCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhcccc
Q 007210 442 ILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANV 521 (612)
Q Consensus 442 ~~~~~~~p~s~g~v~l~s~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 521 (612)
++..+++|.|||+|+|.|+||++.|.|++||+.++.|++.++++++.+++++++..+..+......+..++++.....|.
T Consensus 417 ~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (587)
T PLN02785 417 ILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANI 496 (587)
T ss_pred EEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhcccccccccccccccccccc
Confidence 55677899999999999999999999999999999999999999999999999988776652111000111111111222
Q ss_pred cCCCCCCCCHHHHHHHHHhccccccccccccccCCccCCCCeEeCcCCCeEeecccCCCCCCCChHHHHHHHHHHHHHHH
Q 007210 522 NLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKI 601 (612)
Q Consensus 522 ~~~p~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i 601 (612)
+..|...+++++|++|+|+...+.||++|||+||+|||+++||||++||||||+||||.+|++||++|+||||||+|++|
T Consensus 497 ~~~p~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~I 576 (587)
T PLN02785 497 NLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKI 576 (587)
T ss_pred ccCCCCCCCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 33455567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCC
Q 007210 602 LRQRLGKAAGV 612 (612)
Q Consensus 602 ~~~~~~~~~~~ 612 (612)
+++++++.++|
T Consensus 577 l~~~~~~~~~~ 587 (587)
T PLN02785 577 LRERLGRAAGV 587 (587)
T ss_pred HHHhhhhhcCC
Confidence 99999999876
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=4.4e-86 Score=688.28 Aligned_cols=505 Identities=36% Similarity=0.530 Sum_probs=375.3
Q ss_pred CCCCcccEEEECCCCchHHHHHhhhc--cCeeeEeecCCCCCCCCcchhHHHHHH----HhcCCCCCCccccc----cCC
Q 007210 76 HHHSAFDYIVVGGGTAGCPLAATLSQ--NFTVLLLERGGVPFSDVNVSFLQNFHM----TLADTSPQSASQYF----IST 145 (612)
Q Consensus 76 ~~~~~~DvIVVGsG~aG~~aA~~Lae--g~~VlvLEkG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~ 145 (612)
+...+|||||||+|.|||++|.||+| .+||||||+|+... ...+++.... ...+|.|.+.++.. ..+
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~---~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~ 129 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPP---LYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSE 129 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCc---ccccchHHHHHhccccccccCcCccChhhhhhhcC
Confidence 34678999999999999999999999 59999999998662 2233333333 33456665555443 667
Q ss_pred CceeecccceecccccccceeeecCChh----hhc--CCCCChhhhcccchhhhhccccCCCCc----------------
Q 007210 146 DGVLNARARVLGGGSSINAGFYTRASSQ----FIE--RMGWDAKLVNESFPWVERQIVHQPKQE---------------- 203 (612)
Q Consensus 146 ~~~~~~~g~~lGG~s~~~~~~~~r~~~~----~~~--~~gw~~~~~~~~~~~~~~~~~~~~~~~---------------- 203 (612)
+...++|||+|||+|.+|+|+|.|+++. |.+ ++||+|+++.+||+|.|+.....+...
T Consensus 130 ~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~ 209 (623)
T KOG1238|consen 130 DRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVY 209 (623)
T ss_pred CceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccc
Confidence 8899999999999999999999999954 433 467999999999999998865544322
Q ss_pred --hhHHHHHHHHHHcCCC--CCCCCcccCCCceecceeEECCCCceecHHH-hhhhc--CCCCcEEEeccEEEEEEecCC
Q 007210 204 --GWQKALRDSLLDVGVS--PFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLASA--NPQKITVLIRATVQKIVFDTS 276 (612)
Q Consensus 204 --~~~~~~~~~~~~~g~~--~~~~~~~~~~~g~~~~~~~~~~~g~r~~~~~-~l~~a--~~~g~~v~~~~~V~~l~~~~~ 276 (612)
+....+.++..++|.. ++|+..+... .. ......+|.|+++.. |+..+ .++|+++..++.|++|++|..
T Consensus 210 ~~~~~~~~~~ag~e~G~~~~D~nG~~~tg~---~~-l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~ 285 (623)
T KOG1238|consen 210 PNNLFTAFHRAGTEIGGSIFDRNGERHTGA---SL-LQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPA 285 (623)
T ss_pred cCchhhHhHHhHHhcCCCccCCCCccccch---hh-hhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCC
Confidence 3345566777777742 1222211111 10 011236777877654 66544 367999999999999999965
Q ss_pred CCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCCChhhhhhCCceeeecCcccccccccCCCce
Q 007210 277 GKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNA 356 (612)
Q Consensus 277 g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~~~~L~~~GI~~~~~~p~VG~nl~dh~~~~ 356 (612)
+ .++.||++....|+.++++ ++|+||||||+|+||+|||+|||||+++|+++|||++.|+|+||+||+||+...
T Consensus 286 ~--~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~ 359 (623)
T KOG1238|consen 286 G--KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP 359 (623)
T ss_pred C--ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc
Confidence 4 4999999985337888887 689999999999999999999999999999999999999999999999999998
Q ss_pred EEeecCCCccchhhhhhccchhhhHHHhccCCCCCCCcccccccchhccccccc---------cCCCCCCC---------
Q 007210 357 VFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLS---------TIPPKQRT--------- 418 (612)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--------- 418 (612)
++.....+......+..++.....|+....|+..... ...++++........ ........
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~--~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~ 437 (623)
T KOG1238|consen 360 GFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG--VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKA 437 (623)
T ss_pred eeeecCCCccccccccccchHHHHHHHcCCCCcccCc--ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhh
Confidence 8776666655555555666677788887666443221 011122211100000 00000000
Q ss_pred -hHHHHHHhhhccCCCCCcccceeEEEeecCCCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCcc
Q 007210 419 -PEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKH 497 (612)
Q Consensus 419 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~s~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~ 497 (612)
.++.+.++..... -....++..+++|+|||+|.|.|+||++.|.|++||+.+|+|++.++++++.+.++.++.+
T Consensus 438 ~~~~y~~~~~~~~~-----~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~a 512 (623)
T KOG1238|consen 438 LGEIYQALFGELTN-----SDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKA 512 (623)
T ss_pred cchHHHHhhhhhhc-----CceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHH
Confidence 0111111111110 0123466788999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhHHHHHhhhhcccccCCCC-CCCCHHHHHHHHHhccccccccccccccC------CccCCCCeEeCcCCC
Q 007210 498 FLNYTQCDQKSVEAILNASVRANVNLVPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRL 570 (612)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~-~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG------~VVD~~~rV~g~~nL 570 (612)
|+++.. .++.. |...+.. ...+|++|+||+|....|.||++|||+|| +|||+++||||++||
T Consensus 513 f~~~~~-------r~~~~----~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~L 581 (623)
T KOG1238|consen 513 FQRFGA-------RLWKK----PVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGL 581 (623)
T ss_pred HHHhcc-------hhccc----cCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCc
Confidence 998873 11111 1111111 25789999999999999999999999999 899999999999999
Q ss_pred eEeecccCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCC
Q 007210 571 RVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGKAAG 611 (612)
Q Consensus 571 ~V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i~~~~~~~~~~ 611 (612)
||+|||+||.+|++||++|+||||||+||.|++++.....+
T Consensus 582 RVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~~ 622 (623)
T KOG1238|consen 582 RVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKDG 622 (623)
T ss_pred eEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999988876654
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=4.7e-74 Score=631.09 Aligned_cols=494 Identities=25% Similarity=0.376 Sum_probs=345.2
Q ss_pred CCcccEEEECCCCchHHHHHhhhc--cCeeeEeecCCCCC-CCCcchhHHHHHHHhc----CCCCCCccccccCCCceee
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ--NFTVLLLERGGVPF-SDVNVSFLQNFHMTLA----DTSPQSASQYFISTDGVLN 150 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae--g~~VlvLEkG~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 150 (612)
+.+|||||||||++|+++|.+|+| |.+|||||+|+... .......+..+...+. ++.+.+.++....++.+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMEC 82 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeeec
Confidence 467999999999999999999999 89999999997532 2223233322221111 2233444555566667888
Q ss_pred cccceecccccccceeeecCChhhhc-------CCCCChhhhcccchhhhhcccc-------------C---CCCchhHH
Q 007210 151 ARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVH-------------Q---PKQEGWQK 207 (612)
Q Consensus 151 ~~g~~lGG~s~~~~~~~~r~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~ 207 (612)
.+|++|||+|.+|+|+|.|+.+.+|+ ..+|.|++++|||+++|+.... . ....+...
T Consensus 83 ~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~~ 162 (560)
T PRK02106 83 PRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQ 162 (560)
T ss_pred ccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHHH
Confidence 99999999999999999999986653 3589999999999999986521 0 11234466
Q ss_pred HHHHHHHHcCCCCCCCCcccCCCceecceeEECCCCceecHHH-hhhhc-CCCCcEEEeccEEEEEEecCCCCCCeEEEE
Q 007210 208 ALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGV 285 (612)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~g~r~~~~~-~l~~a-~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV 285 (612)
.+.++++++|++...........++..+.. .+.+|.|+++.. |++.+ ++.|++|++++.|++|+++++ +++||
T Consensus 163 ~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~-~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~----~a~GV 237 (560)
T PRK02106 163 AFVEAGVQAGYPRTDDLNGYQQEGFGPMDR-TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK----RAVGV 237 (560)
T ss_pred HHHHHHHHcCCCcCCCCCCCCCceeEEEee-ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC----eEEEE
Confidence 788888999986443221111222222112 235777877664 77655 578999999999999999843 99999
Q ss_pred EEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCCChhhhhhCCceeeecCcccccccccCCCceEEeecCCCc
Q 007210 286 IFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPV 365 (612)
Q Consensus 286 ~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~~~~L~~~GI~~~~~~p~VG~nl~dh~~~~~~~~~~~~~ 365 (612)
++.+.++ ..++. ++|+||||||+|+||+|||+|||||+++|+++||+++.|+|+||+||+||+...+.+.++.+.
T Consensus 238 ~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~~ 312 (560)
T PRK02106 238 EYERGGG-RETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPV 312 (560)
T ss_pred EEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCCCc
Confidence 9986544 33333 689999999999999999999999999999999999999999999999999988877766543
Q ss_pred cchh-hhhhc-cchhhhHHHhccCCCCCCCcccccccchhccccccccCCCCCCChHHHHHHhhhccCCCCCcccceeEE
Q 007210 366 EQSL-IETVG-ITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL 443 (612)
Q Consensus 366 ~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (612)
.... ..... ......|.....|..... . ....++.... ..+ ..+ ... ...+...+....... .......+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~-~~~-~~p-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 385 (560)
T PRK02106 313 SLYPALKWWNKPKIGAEWLFTGTGLGASN-H-FEAGGFIRSR-AGV-DWP-NIQ-YHFLPVAIRYDGSNA-VKGHGFQAH 385 (560)
T ss_pred ccccccchhhhhHHHHHHHhcCCCCcccc-c-cceeeEEecC-CCC-CCC-CeE-EEEeeccccccCCCC-CCCCeEEEE
Confidence 2110 00000 001112322222211100 0 0000000000 000 000 000 000000000000000 000011223
Q ss_pred EeecCCCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhcccccC
Q 007210 444 EKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNL 523 (612)
Q Consensus 444 ~~~~~p~s~g~v~l~s~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 523 (612)
..+.+|.|||+|+|+++||++.|.|+++|+.++.|++.++++++++++++++.+++.+.. .+ .
T Consensus 386 ~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~------~~-----------~ 448 (560)
T PRK02106 386 VGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRG------RE-----------I 448 (560)
T ss_pred EEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccc------cc-----------c
Confidence 356789999999999999999999999999999999999999999999999887766431 01 1
Q ss_pred CCC-CCCCHHHHHHHHHhccccccccccccccC----CccCCCCeEeCcCCCeEeecccCCCCCCCChHHHHHHHHHHHH
Q 007210 524 VPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMG 598 (612)
Q Consensus 524 ~p~-~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG----~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a 598 (612)
.|. ...+++++++|++....+++|++|||||| +|||++|||||++||||+|+||||+.+++||++|+||||+|+|
T Consensus 449 ~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraA 528 (560)
T PRK02106 449 SPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAA 528 (560)
T ss_pred CCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHH
Confidence 222 24678899999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 007210 599 VKILRQR 605 (612)
Q Consensus 599 ~~i~~~~ 605 (612)
|+|+++.
T Consensus 529 d~I~~~~ 535 (560)
T PRK02106 529 DLIRGRT 535 (560)
T ss_pred HHHhccC
Confidence 9998765
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.7e-73 Score=621.92 Aligned_cols=486 Identities=26% Similarity=0.362 Sum_probs=341.1
Q ss_pred cEEEECCCCchHHHHHhhhc-c-CeeeEeecCCCCCC-CCcchhHHHHHHHh----cCCCCCCccccccCCCceeecccc
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGVPFS-DVNVSFLQNFHMTL----ADTSPQSASQYFISTDGVLNARAR 154 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~ 154 (612)
||||||||+||+++|.||+| + .||||||+|+.... ......+..+...+ .++.+.+.++....++.+.+.+|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 6 79999999985322 22223332222211 123334455666667778899999
Q ss_pred eecccccccceeeecCChhhhc-------CCCCChhhhcccchhhhhccccC---------------CCCchhHHHHHHH
Q 007210 155 VLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVHQ---------------PKQEGWQKALRDS 212 (612)
Q Consensus 155 ~lGG~s~~~~~~~~r~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 212 (612)
+|||+|.+|+|+|.|+++.+|+ ..+|.|++++|||+++|+..... +...+..+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 9999999999999999986543 25899999999999999875411 1123456778888
Q ss_pred HHHcCCCCCCCCcccCCCceecceeEECCCCceecHHH-hhhhc-CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC
Q 007210 213 LLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE 290 (612)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~g~r~~~~~-~l~~a-~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~ 290 (612)
++++|++...........++..+.. .+.+|.|+++.. |++.+ ++.|++|+++++|+||+++++ ||+||++.+.
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~----ra~GV~~~~~ 235 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDS-TVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN----RATGVEFKKG 235 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEE-EcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC----eEEEEEEEeC
Confidence 8999986433222111122222112 235777877654 77665 478999999999999999854 9999999853
Q ss_pred CCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCCChhhhhhCCceeeecCcccccccccCCCceEEeecCCCccchh-
Q 007210 291 NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSL- 369 (612)
Q Consensus 291 ~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~~~~L~~~GI~~~~~~p~VG~nl~dh~~~~~~~~~~~~~~~~~- 369 (612)
+...++. ++|+||||||+|+||+|||+|||||+++|+++||+++.++|+||+|||||+...+.+.++.+.....
T Consensus 236 -~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~~ 310 (532)
T TIGR01810 236 -GRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYPS 310 (532)
T ss_pred -CcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCcccccc
Confidence 4334443 6899999999999999999999999999999999999999999999999999888877665432100
Q ss_pred hhhhc-cchhhhHHHhccCCCCCCCcccccccchhccccccccCCCCCCChHHHHHHhh---hccCCCCCcccceeEEEe
Q 007210 370 IETVG-ITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIR---NKRTLPHEAFKGGFILEK 445 (612)
Q Consensus 370 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 445 (612)
..... ......|.....+..... . ....+++..... ...++....+.. ..............+...
T Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (532)
T TIGR01810 311 LNWLKQPFIGAQWLFGRKGAGASN-H-FEGGGFVRSNDD--------VDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVG 380 (532)
T ss_pred cchhhhhHHHHHHHhcCCCCcccc-c-cceeEEEecCCC--------CCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEe
Confidence 00000 000112322222211100 0 000001100000 000000000000 000000000001122345
Q ss_pred ecCCCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhcccccCCC
Q 007210 446 IASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVP 525 (612)
Q Consensus 446 ~~~p~s~g~v~l~s~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p 525 (612)
..+|.|||+|+|+++||.+.|.|+++|+.++.|++.++++++.+++++++.++..+.. . +..|
T Consensus 381 ~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~------~-----------~~~p 443 (532)
T TIGR01810 381 PMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRG------G-----------EISP 443 (532)
T ss_pred ecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccc------c-----------ccCC
Confidence 6789999999999999999999999999999999999999999999999877666431 0 1122
Q ss_pred -CCCCCHHHHHHHHHhccccccccccccccC------CccCCCCeEeCcCCCeEeecccCCCCCCCChHHHHHHHHHHHH
Q 007210 526 -KHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMG 598 (612)
Q Consensus 526 -~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG------~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a 598 (612)
....+|+++++|++....+.+|++|||||| +|||++|||||++||||||+||||+++++||++|+||||||+|
T Consensus 444 ~~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraA 523 (532)
T TIGR01810 444 GPEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAA 523 (532)
T ss_pred CCCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHH
Confidence 234689999999999999999999999999 4999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 007210 599 VKILRQ 604 (612)
Q Consensus 599 ~~i~~~ 604 (612)
|+|+++
T Consensus 524 d~I~~~ 529 (532)
T TIGR01810 524 DIIRGK 529 (532)
T ss_pred HHHhcc
Confidence 998864
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-66 Score=564.13 Aligned_cols=489 Identities=25% Similarity=0.344 Sum_probs=352.0
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcC----CCCCCccccccCCCceeecc
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLAD----TSPQSASQYFISTDGVLNAR 152 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 152 (612)
..+|||||||||.+|+++|.+|++ |.+|||||+|+....- .+..+..+.....+ +.+.+..+.+...+.+.+++
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~r 83 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWPR 83 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCccccccc
Confidence 568999999999999999999999 9999999999853221 33444444444433 44555566677788899999
Q ss_pred cceecccccccceeeecCChhhhc-------CCCCChhhhcccchhhhhcccc--------CC-----------CCchhH
Q 007210 153 ARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVH--------QP-----------KQEGWQ 206 (612)
Q Consensus 153 g~~lGG~s~~~~~~~~r~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~--------~~-----------~~~~~~ 206 (612)
+++|||+|.+|+|+|.|+.+.+|+ ..+|+|++++|||+++|+...+ +. ...+..
T Consensus 84 gk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~~ 163 (542)
T COG2303 84 GKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIA 163 (542)
T ss_pred cCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHHH
Confidence 999999999999999999997763 2669999999999999975443 10 112456
Q ss_pred HHHHHHHHHcCCCCCCCCcccCCCceecceeEECCCCceecHHH-hhhh-cCCCCcEEEeccEEEEEEecCCCCCCeEEE
Q 007210 207 KALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLAS-ANPQKITVLIRATVQKIVFDTSGKRPKAVG 284 (612)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~g~r~~~~~-~l~~-a~~~g~~v~~~~~V~~l~~~~~g~~~~v~G 284 (612)
..+.++..++|++....+.-....|+...+..++ +|.|+++.. |+.. .+++|++|++++.|++|+++.+ |++|
T Consensus 164 ~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~-~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~----r~~g 238 (542)
T COG2303 164 RAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTIC-NGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD----RAVG 238 (542)
T ss_pred HHHHHHHHHcCCCcCcccccCCCCCcccceeecc-CCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC----eeEE
Confidence 6777777888987544333222233333333334 777777664 6665 4778999999999999999986 9999
Q ss_pred EEEEeCCCCe-EEEEeecCCCceEEecCCCcCChHHHHHcCCCChhhhhhCCceeeecCcccccccccCCCceEEeecCC
Q 007210 285 VIFKDENGNQ-HQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNR 363 (612)
Q Consensus 285 V~~~~~~g~~-~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~~~~L~~~GI~~~~~~p~VG~nl~dh~~~~~~~~~~~ 363 (612)
|++...++.. ...+ ++++||||||+|+||+|||+||||+.+.|..+||.++.++|+||+|||||+...+.+..+.
T Consensus 239 v~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~~~ 314 (542)
T COG2303 239 VEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEATE 314 (542)
T ss_pred EEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheeccC
Confidence 9998544422 2223 7899999999999999999999999999999999999999999999999998877766555
Q ss_pred Cccchhhhhhccchh--hhHHHhccCCCCCCCcccccccchhccccccccCCCCCCChHHHHHHhhhccCCC--CCcccc
Q 007210 364 PVEQSLIETVGITKL--GVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLP--HEAFKG 439 (612)
Q Consensus 364 ~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 439 (612)
+.............. ..|.....|..... ....+ +....+....++. +.++....... ......
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~---~~~~g--------f~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~ 382 (542)
T COG2303 315 PTNDSVLSLFSKLGIGADRYLLTRDGPGATN---HFEGG--------FVRSGPAGEYPDG-QYHFAPLPLAIRAAGAEHG 382 (542)
T ss_pred ccccccccccccccccceeEEeecCCCcccc---ccccc--------ccccCccccCCCc-ccccccccccccccccCCc
Confidence 431111100011000 01111111210000 00001 1111111111111 11111110000 011112
Q ss_pred eeEEEeecCCCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhcc
Q 007210 440 GFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRA 519 (612)
Q Consensus 440 ~~~~~~~~~p~s~g~v~l~s~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (612)
..+.....+|.|+|.|++.+.||...|.|+++|+.++.|++.+.++++..++++.+..+..+.. .++ .
T Consensus 383 ~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~------~e~------~ 450 (542)
T COG2303 383 FTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRK------AEL------A 450 (542)
T ss_pred cEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHH------Hhh------c
Confidence 2345667899999999999999999999999999999999999999999999998665555441 121 1
Q ss_pred cccCCCCCCCCHHHHHHHHHhccccccccccccccC-----CccCCCCeEeCcCCCeEeecccCCCCCCCChHHHHHHHH
Q 007210 520 NVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 594 (612)
Q Consensus 520 p~~~~p~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG-----~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala 594 (612)
|+ ....+++++.+|++....+.+|++|||||| +|+|++|||||++||||+|+|+||+++++||++||+|||
T Consensus 451 ~~----~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala 526 (542)
T COG2303 451 PG----PRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALA 526 (542)
T ss_pred CC----CccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHH
Confidence 22 235678899999999999999999999999 355599999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007210 595 RYMGVKILRQ 604 (612)
Q Consensus 595 ~r~a~~i~~~ 604 (612)
+|+||+|+++
T Consensus 527 ~raA~~I~~~ 536 (542)
T COG2303 527 ERAADHILGD 536 (542)
T ss_pred HHHHHHHhhc
Confidence 9999999973
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=8.4e-50 Score=425.39 Aligned_cols=465 Identities=17% Similarity=0.165 Sum_probs=281.0
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCC---------cc-hhHHHHHH----HhcCCC-CC--------
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDV---------NV-SFLQNFHM----TLADTS-PQ-------- 136 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~---------~~-~~~~~~~~----~~~~~~-~~-------- 136 (612)
|||||||+|++|+++|..|++ |.||+|||+|....... .+ .....+.. .+...+ +.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999 99999999998654321 00 01112211 111111 00
Q ss_pred ---Ccc----ccccC-C-----Cc---e-eecccceecccccccceeeecCChhhhc--CCCCC--hhhhcccchhhhhc
Q 007210 137 ---SAS----QYFIS-T-----DG---V-LNARARVLGGGSSINAGFYTRASSQFIE--RMGWD--AKLVNESFPWVERQ 195 (612)
Q Consensus 137 ---~~~----~~~~~-~-----~~---~-~~~~g~~lGG~s~~~~~~~~r~~~~~~~--~~gw~--~~~~~~~~~~~~~~ 195 (612)
.+. ...+. . +. + ...+-|.|||+|++|++.+.|..++... ..+|| |++++|||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 000 00000 0 11 1 1346789999999999999999984321 25787 89999999999999
Q ss_pred cccCCCC--ch-----hHHHHHHHHHHcCC-CCCCCCcccCCCceecceeEECCCCceecH-HHhhh-----hcCCCCcE
Q 007210 196 IVHQPKQ--EG-----WQKALRDSLLDVGV-SPFNGFTYDHIYGTKIGGTIFDRFGRRHTA-AELLA-----SANPQKIT 261 (612)
Q Consensus 196 ~~~~~~~--~~-----~~~~~~~~~~~~g~-~~~~~~~~~~~~g~~~~~~~~~~~g~r~~~-~~~l~-----~a~~~g~~ 261 (612)
+++.+.. .+ ....+.+.+. |. ..... . ..|... . |..+.+++. .+.+. .+...|++
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~----P-lA~~~~--~-c~~~ak~s~~~t~~~~~~~~~~~~~n~~ 230 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYK--GQRDFQPL----P-LACHRR--T-DPTYVEWHSADTVFDLQPNDDAPSERFT 230 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhc--cccccccC----c-hhhhcc--C-CCccceecCCccchhhhhhhhccCCCEE
Confidence 8876531 11 1112222222 22 11000 0 001100 0 112223322 12222 22467899
Q ss_pred EEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCCChhhhhhCCceeee
Q 007210 262 VLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVL 340 (612)
Q Consensus 262 v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~~~~L~~~GI~~~~ 340 (612)
|++++.|++|++|++++ .+|+||++.+. +|+.++++ +|.||||||+++||||||+|+++... .+.|+....
T Consensus 231 l~~~a~v~~i~~d~~~~-~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~--~p~gl~Nss 302 (544)
T TIGR02462 231 LLTNHRCTRLVRNETNE-SEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLG--RPDPTNPPP 302 (544)
T ss_pred EEcCCEEEEEEeCCCCC-ceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCc--CCCCcCCCC
Confidence 99999999999986421 28999999986 57777664 68999999999999999999998432 344554221
Q ss_pred cCcccccccccCCCceEEeecCCCccchhhhhhccchhhhH-HHh----ccCCCCCCCcccccccchhccccccccCCC-
Q 007210 341 DNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVY-IEA----SSGFGESRDSIHCHHGIMSAEIGQLSTIPP- 414 (612)
Q Consensus 341 ~~p~VG~nl~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 414 (612)
.++.||||||||+...+.+.++++....+. +......| ... ..++.... .+..+.....+ ........
T Consensus 303 ~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~~~~~~~ 376 (544)
T TIGR02462 303 LLPSLGRYITEQSMTFCQIVLSTELVDSVR---SDPRGLDWWKEKVANHMMKHPEDP--LPIPFRDPEPQ-VTTPFTEEH 376 (544)
T ss_pred CCCCCCcchhcCCCccEEEEecchhhhhcc---CCccccccccccchhhhccccCCc--ccccccccCcc-ccccccccc
Confidence 248999999999988777766654321110 00000000 000 00000000 00000000000 00000000
Q ss_pred CCCChHHHHHHhh--hc-cCCCCC-cccceeEEEeecCCCcceEEEecC--CCCCCCCeeecCCCCCHHHHHHHHHHHHH
Q 007210 415 KQRTPEAIQDYIR--NK-RTLPHE-AFKGGFILEKIASPISTGELSLIN--TNVDDNPSVSFNYFSHPLDLKRCVDGVRM 488 (612)
Q Consensus 415 ~~~~~~~~~~~~~--~~-~~~~~~-~~~~~~~~~~~~~p~s~g~v~l~s--~d~~~~p~i~~~y~~~~~D~~~~~~~~~~ 488 (612)
.|... .....+. .. +..... .....++.+.+ |..+++|+|++ +|.+++|+++++|..++.|++.+..+++.
T Consensus 377 ~w~~~-~~~~~~~~g~~~~~~~~~~~v~l~~~~e~l--P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~ 453 (544)
T TIGR02462 377 PWHTQ-IHRDAFSYGAVGPSIDSRVIVDLRFFGRTE--PKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTD 453 (544)
T ss_pred ccchh-hhhhhhhcccccccccccceeeEEEEeccC--CCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHH
Confidence 00000 0000000 00 000000 11122344444 88889999976 69999999999999999999999999999
Q ss_pred HHHHHcCccccccccccchhHHHHHhhhhcccccCCCCCCCCHHHHHHHHHhccccccccccccccC-----CccCCCCe
Q 007210 489 AAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVSTEYK 563 (612)
Q Consensus 489 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG-----~VVD~~~r 563 (612)
+.++++..+...... .+ .| .....++|++|||||| +|||+++|
T Consensus 454 ~~~i~~~~G~~~~~~--------------------~~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~r 501 (544)
T TIGR02462 454 MCNVAAKIGGYLPGS--------------------LP----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSK 501 (544)
T ss_pred HHHHHHHcCCCcccc--------------------cc----------cc--cCCCccccCCCCeecCCCCCCceECCCCc
Confidence 999988764322110 00 01 0123578999999999 79999999
Q ss_pred EeCcCCCeEeecccCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 007210 564 VLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 604 (612)
Q Consensus 564 V~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~a~~i~~~ 604 (612)
|||++||||+|+|+||+.+++||++|+||||+|+|++|+++
T Consensus 502 v~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 502 VHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred EeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999865
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.2e-43 Score=361.11 Aligned_cols=263 Identities=33% Similarity=0.480 Sum_probs=180.6
Q ss_pred ccEEEECCCCchHHHHHhhhc-c-CeeeEeecCCCCCCCCcchhHHHHHHHh---cCCCCCCccccccCCCceeecccce
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGVPFSDVNVSFLQNFHMTL---ADTSPQSASQYFISTDGVLNARARV 155 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 155 (612)
|||||||||++|+++|.+|++ + .||||||+|+....... .......... ..+.+.+..+.....+.+.+++|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDS-TPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG 79 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGH-HGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccc-hhhhccccccCcccccccccccccccccceeeeeccee
Confidence 899999999999999999999 6 79999999997654330 0000000000 0111222334455667788889999
Q ss_pred ecccccccceeeecCChhhhc-------CCCCChhhhcccchhhhhccc-------------c---CCCCchhHHHHHHH
Q 007210 156 LGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIV-------------H---QPKQEGWQKALRDS 212 (612)
Q Consensus 156 lGG~s~~~~~~~~r~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~ 212 (612)
|||+|.+|+|++.|+++.+++ ..+|.|+++.+||+++|+... + .+...+....+.++
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a 159 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA 159 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence 999999999999999986543 245889999999999994322 1 12234456778899
Q ss_pred HHHcCCCCCCCCcccCCCceecceeE-ECCCCceecHH-Hhhhhc-CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe
Q 007210 213 LLDVGVSPFNGFTYDHIYGTKIGGTI-FDRFGRRHTAA-ELLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD 289 (612)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~g~~~~~~~-~~~~g~r~~~~-~~l~~a-~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~ 289 (612)
+.++|++...... ....+..+... .++.+.|+++. .|++.+ ++.|++|+++++|++|+++.++ .+++||++.+
T Consensus 160 ~~~~G~~~~~~~~--~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~--~~a~gV~~~~ 235 (296)
T PF00732_consen 160 AEELGIPVPQDFN--GCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG--GRATGVEYVD 235 (296)
T ss_dssp HHHTTHHBCSCTT--SSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS--TEEEEEEEEE
T ss_pred HHHcCCccccccc--cccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc--cceeeeeeee
Confidence 9999986221111 11222222111 24677777664 477666 4559999999999999996332 3999999998
Q ss_pred CCCC-eEEEEeecCCCceEEecCCCcCChHHHHHcCCCChhhhhhCCceeeecCcccccccccCC
Q 007210 290 ENGN-QHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNP 353 (612)
Q Consensus 290 ~~g~-~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~~~~L~~~GI~~~~~~p~VG~nl~dh~ 353 (612)
.++. ...+. ++|+||||||+|+||+|||+|||||.++|+++||++++++| |||||||||
T Consensus 236 ~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 236 NDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp TTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred cCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 7776 33333 57999999999999999999999999999999999999999 999999997
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.98 E-value=1.5e-32 Score=248.26 Aligned_cols=136 Identities=29% Similarity=0.517 Sum_probs=109.9
Q ss_pred CCcceEEEecCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccc--C-CC
Q 007210 449 PISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVN--L-VP 525 (612)
Q Consensus 449 p~s~g~v~l~s~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~-~p 525 (612)
|+|||+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++++. ++.+.. .. ..|.. . ..
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~-~~-----------~~~~~~~~~~~ 67 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGA-GE-----------LLPGPSPFCPD 67 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEE-EE-----------EESCGCSCCGC
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccc-cc-----------ccccccccccc
Confidence 789999999999999999999999999999999999999999999998 555431 00 00110 0 11
Q ss_pred CCCCCHHHHHHHHHhccccccccccccccC-----CccCCCCeEeCcCCCeEeecccCCCCCCCChHHHHHHHHHHH
Q 007210 526 KHTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYM 597 (612)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG-----~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~~Ti~ala~r~ 597 (612)
....+++++++|++....+.+|++|||||| +|||++|||||++||||+|+||||+.+++||++|+||||+|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 68 ASLDSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp STTTCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cccccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 235678899999999999999999999999 999999999999999999999999999999999999999995
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.79 E-value=2.6e-18 Score=186.66 Aligned_cols=192 Identities=19% Similarity=0.218 Sum_probs=108.5
Q ss_pred CCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeecccce
Q 007210 77 HHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARV 155 (612)
Q Consensus 77 ~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 155 (612)
++.++||||||+|.+|++||+++++ |.+|+||||.+.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~------------------------------------------ 95 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV------------------------------------------ 95 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC------------------------------------------
Confidence 4678999999999999999999999 999999999973
Q ss_pred ecccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCch------hHHHHHHHHHHcCCCCCCCCcccCC
Q 007210 156 LGGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEG------WQKALRDSLLDVGVSPFNGFTYDHI 229 (612)
Q Consensus 156 lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~ 229 (612)
+||++....+.+...........+.. ++.+.+|++..+......+... ......+++.+.|++... . ...
T Consensus 96 ~GG~s~~s~Gg~~~~~~~~~~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~-~--~~~ 171 (506)
T PRK06481 96 AGGNTMKASSGMNASETKFQKAQGIA-DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDN-L--TIT 171 (506)
T ss_pred CCCcccccCCccccCChHHHHhcCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcCceEee-c--ccC
Confidence 34444433332222222222211211 1222334333222111111000 012245677777764211 0 000
Q ss_pred CceecceeEECCCCcee---cHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCce
Q 007210 230 YGTKIGGTIFDRFGRRH---TAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSE 306 (612)
Q Consensus 230 ~g~~~~~~~~~~~g~r~---~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~ 306 (612)
.+........+..+... ....+...+++.|++|+++++|++|+.+++ +|+||++...+++..++ .+|.
T Consensus 172 ~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g----~V~Gv~~~~~~g~~~~i-----~a~~ 242 (506)
T PRK06481 172 GGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG----KVTGVKVKINGKETKTI-----SSKA 242 (506)
T ss_pred CCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC----EEEEEEEEeCCCeEEEE-----ecCe
Confidence 11111111111111111 112244556678999999999999987654 99999987655555555 4699
Q ss_pred EEecCCCcC-ChHHHHHc
Q 007210 307 VILSCGAIG-TPQMLKLS 323 (612)
Q Consensus 307 VILaaG~~~-sp~lLl~S 323 (612)
||||+|+|. ++.++.+-
T Consensus 243 VVlAtGG~~~n~~m~~~~ 260 (506)
T PRK06481 243 VVVTTGGFGANKDMIAKY 260 (506)
T ss_pred EEEeCCCcccCHHHHHHh
Confidence 999999999 56666543
No 10
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.70 E-value=1.4e-16 Score=174.32 Aligned_cols=63 Identities=17% Similarity=0.319 Sum_probs=49.2
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
|...+++.|++|+++++|++|+.++ + +|+||++.+ +|+.+.++ ++|.||||||+|+ +++++..
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~~-g---~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~~~ 286 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDDG-G---RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMRWK 286 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEecC-C---EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHHHH
Confidence 4444667899999999999999764 3 999999875 56555555 6799999999999 5555554
No 11
>PRK07121 hypothetical protein; Validated
Probab=99.68 E-value=2.4e-16 Score=171.41 Aligned_cols=193 Identities=20% Similarity=0.285 Sum_probs=111.2
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeeccccee
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVL 156 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (612)
+.++||||||+|.+|++||++|++ |.||+||||.+ .+
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~------------------------------------------~~ 55 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAA------------------------------------------GA 55 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC------------------------------------------CC
Confidence 678999999999999999999999 99999999987 34
Q ss_pred cccccccceeeecC-ChhhhcCCCCChhhhcccchhhhhccccCCCCchh------HHHHHHHHHHcCCCCCCCC-----
Q 007210 157 GGGSSINAGFYTRA-SSQFIERMGWDAKLVNESFPWVERQIVHQPKQEGW------QKALRDSLLDVGVSPFNGF----- 224 (612)
Q Consensus 157 GG~s~~~~~~~~r~-~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~----- 224 (612)
||+|.+.++.+..+ ....+...+.. ++.+.+++++.+......+.... .....+++++.|++.....
T Consensus 56 gG~s~~sgG~~~~~~g~~~q~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~ 134 (492)
T PRK07121 56 GGATALSGGVIYLGGGTAVQKAAGFE-DSPENMYAYLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKT 134 (492)
T ss_pred CCcccccCeEEEeCCCcHHHHhcCCC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcc
Confidence 66666666654432 22222222221 22223333332222211111111 1223467777775311000
Q ss_pred --ccc----CCCce-------------ecceeEECCCC----ceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCe
Q 007210 225 --TYD----HIYGT-------------KIGGTIFDRFG----RRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPK 281 (612)
Q Consensus 225 --~~~----~~~g~-------------~~~~~~~~~~g----~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~ 281 (612)
+.. ...+. ..++.. ...+ .+.....+...+++.|++|+++++|++|+.++++ +
T Consensus 135 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g---~ 210 (492)
T PRK07121 135 SYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRV-QGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG---R 210 (492)
T ss_pred cCCCCCcccccchhhcchhhhhccCCcccceec-CCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC---C
Confidence 000 00000 000000 0001 0111122445567789999999999999987654 8
Q ss_pred EEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 282 AVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 282 v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
|+||++.+ +++...++ ++|.||||||+|. ++.++..
T Consensus 211 v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~~ 247 (492)
T PRK07121 211 VVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVAR 247 (492)
T ss_pred EEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHHH
Confidence 99999974 55555554 4599999999999 5555544
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.67 E-value=6.6e-16 Score=170.04 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=50.5
Q ss_pred hhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 253 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 253 ~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
..+++.|++|+++++|++|+.|++| +|+||++.. +|+.++++ ++|.||||||+|+ ++.++.+
T Consensus 221 ~~~~~~gv~i~~~~~~~~Li~d~~g---~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 221 LALKDAGVPLWLDSPMTELITDPDG---AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHHhCCceEEeCCEEEEEEECCCC---cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHHHH
Confidence 4456789999999999999998655 999999974 67666665 5679999999999 6776654
No 13
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.63 E-value=3.9e-15 Score=163.34 Aligned_cols=63 Identities=19% Similarity=0.411 Sum_probs=50.1
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
+...+++.|++|+++++|++|+.+++ +|+||++.. +|+.+.++ ++|.||||||+|+ ++.++..
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~~g----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~~~ 277 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVEDG----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMRKR 277 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHHHH
Confidence 34556778999999999999998754 999999974 67666665 5689999999999 5666554
No 14
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.63 E-value=3.9e-15 Score=163.65 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=105.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeeccccee
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVL 156 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (612)
+.++||||||+|.+|++||+++++ |.+|+||||++.. .+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~----------------------------------------~~ 41 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEA----------------------------------------NL 41 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC----------------------------------------CC
Confidence 468999999999999999999999 9999999999721 24
Q ss_pred cccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCch----h--------HHHHHHHHHHcCCCCCCCC
Q 007210 157 GGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEG----W--------QKALRDSLLDVGVSPFNGF 224 (612)
Q Consensus 157 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~g~~~~~~~ 224 (612)
||++.+..+.+.......++..+.. ++.+.++++..+......+... + .....++++++|++-....
T Consensus 42 GG~s~~s~Gg~~~~~~~~q~~~gi~-ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~ 120 (549)
T PRK12834 42 GGQAFWSLGGLFLVDSPEQRRLGIK-DSLELALQDWLGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVV 120 (549)
T ss_pred CCceeccCCceeccCCHHHHhcCcc-cCHHHHHHHHHhccCCCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecC
Confidence 5555554443332322222222221 2233333333322221111110 1 1344577777886421100
Q ss_pred c--c-c--CCC--ceecceeEE-CCCCceecHHHhhhhc----CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe--C
Q 007210 225 T--Y-D--HIY--GTKIGGTIF-DRFGRRHTAAELLASA----NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD--E 290 (612)
Q Consensus 225 ~--~-~--~~~--g~~~~~~~~-~~~g~r~~~~~~l~~a----~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~--~ 290 (612)
. . . ... +........ ...|. .....|...+ +..|++|++++++++|+.+++ +|+||++.+ .
T Consensus 121 ~~~~~~~~~~~~~~~~~~r~~~~~~~G~-~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g----~V~Gv~~~~~~~ 195 (549)
T PRK12834 121 GWAERGGGDAGGHGNSVPRFHITWGTGP-GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDG----AVTGVRGTVLEP 195 (549)
T ss_pred CccccCCcccCCcccccCceecCCCCcH-HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCC----EEEEEEEEeccc
Confidence 0 0 0 000 000100000 01111 1111232222 244699999999999998753 999999742 1
Q ss_pred C------------CCeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 291 N------------GNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 291 ~------------g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
+ +....+ .+|.||||||+|+ ++.++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~i-----~AkaVILATGGf~~n~em~~~ 235 (549)
T PRK12834 196 SDAERGEASSREVVGEFEL-----RAQAVIVTSGGIGGNHELVRR 235 (549)
T ss_pred ccccccccccccccceEEE-----ecCEEEEeCCCcccCHHHHHH
Confidence 1 122333 3589999999999 6666654
No 15
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.62 E-value=3.5e-15 Score=162.58 Aligned_cols=63 Identities=16% Similarity=0.347 Sum_probs=48.6
Q ss_pred hhhhc-CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 251 LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 251 ~l~~a-~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
++..+ ++.|++|+++++|++|+.+++ +|+||++.. +|+...++ ++|.||||||+|+ ++.|+.+
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~~g----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~~~ 243 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVEDG----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMRAR 243 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecCC----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHHHH
Confidence 44444 346999999999999998754 999999874 67666665 5679999999998 5665554
No 16
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.59 E-value=5.2e-15 Score=158.12 Aligned_cols=188 Identities=21% Similarity=0.276 Sum_probs=102.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeecccceecccc
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVLGGGS 160 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s 160 (612)
||||||+|.||++||++|+| |.||+||||++ .+||++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~------------------------------------------~~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP------------------------------------------RLGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSS------------------------------------------GGGSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeec------------------------------------------cccccc
Confidence 89999999999999999999 99999999997 446666
Q ss_pred cccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCc------hhHHHHHHHHHHcCCCCCC----CCcccCCC
Q 007210 161 SINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQE------GWQKALRDSLLDVGVSPFN----GFTYDHIY 230 (612)
Q Consensus 161 ~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~----~~~~~~~~ 230 (612)
.+..+.+...........+- .+..+.++.+..+......+.. .......+++.+.|++... .+......
T Consensus 39 ~~s~g~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g 117 (417)
T PF00890_consen 39 AFSSGGFDAAGTPPQREAGI-EDSPEEFFQDIMAAGGGLNDPDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFG 117 (417)
T ss_dssp GGTCSEEEESSSHSSHHTTT-TCHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEET
T ss_pred ccccCceeeecccccccccc-cccccccceeeecccccccccchhhhhhhcccceehhhhhhcccccccccccccccccC
Confidence 66555554443222111111 0122333333333222111111 1123345777777764221 00011111
Q ss_pred ceecc-eeEE-CCCC------c-eecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEee
Q 007210 231 GTKIG-GTIF-DRFG------R-RHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLA 300 (612)
Q Consensus 231 g~~~~-~~~~-~~~g------~-r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~ 300 (612)
..... .... ..+. . ......+...+++.|++|+++++|++|+.+++ +|+||++.+ .+|+.++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g----~V~Gv~~~~~~~g~~~~i~-- 191 (417)
T PF00890_consen 118 GHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG----RVTGVVAENPADGEFVRIK-- 191 (417)
T ss_dssp TESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT----EEEEEEEEETTTCEEEEEE--
T ss_pred CccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC----ceeEEEEEECCCCeEEEEe--
Confidence 11111 1111 1111 0 11111244556778899999999999999865 999999994 467767665
Q ss_pred cCCCceEEecCCCcCChHHHHH
Q 007210 301 GNPKSEVILSCGAIGTPQMLKL 322 (612)
Q Consensus 301 ~~a~k~VILaaG~~~sp~lLl~ 322 (612)
+|.||||||+|+. .++.+
T Consensus 192 ---A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 192 ---AKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp ---ESEEEE----BGG-HHHHH
T ss_pred ---eeEEEeccCcccc-ccccc
Confidence 4699999999999 55443
No 17
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.59 E-value=1.2e-14 Score=157.44 Aligned_cols=195 Identities=19% Similarity=0.170 Sum_probs=109.9
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeeccccee
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVL 156 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (612)
..++||||||+|++|+++|++|++ |.+|+||||++.. ..
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~----------------------------------------~~ 41 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPRE----------------------------------------WR 41 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc----------------------------------------CC
Confidence 357999999999999999999999 9999999998621 13
Q ss_pred cccccccceeeecCCh-hhhcCCCCChhhhcccchhhhhccccCCCCch------hHHHHHHHHHHcCCCCCCCCcccCC
Q 007210 157 GGGSSINAGFYTRASS-QFIERMGWDAKLVNESFPWVERQIVHQPKQEG------WQKALRDSLLDVGVSPFNGFTYDHI 229 (612)
Q Consensus 157 GG~s~~~~~~~~r~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~ 229 (612)
||+|.+..++...... .......+ ..+.+++++.+.......... ......+++.+.|++..... ...
T Consensus 42 GG~s~~s~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~--~~~ 116 (466)
T PRK08274 42 GGNSRHTRNLRCMHDAPQDVLVGAY---PEEEFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPL--SGA 116 (466)
T ss_pred CcccccCCceeeeCCCchhhccccc---cHHHHHHHHHHhhCCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecC--CCc
Confidence 5555555442221111 00000011 112233333322221111110 01233466777776311100 000
Q ss_pred CceecceeEECCCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEe
Q 007210 230 YGTKIGGTIFDRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVIL 309 (612)
Q Consensus 230 ~g~~~~~~~~~~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VIL 309 (612)
.......... ..+.......+...+++.|++|+++++|++|+.+++ +|+||++.+.+++...+. +|.|||
T Consensus 117 ~~~~~~~~~~-~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g----~v~gv~~~~~~g~~~~i~-----a~~VIl 186 (466)
T PRK08274 117 LHVARTNAFF-WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG----RFVGARAGSAAGGAERIR-----AKAVVL 186 (466)
T ss_pred cccCCCCeee-cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC----eEEEEEEEccCCceEEEE-----CCEEEE
Confidence 0000000010 111111122245556778999999999999998754 899999865566555553 589999
Q ss_pred cCCCcCChHHHHHcCCCC
Q 007210 310 SCGAIGTPQMLKLSGVGP 327 (612)
Q Consensus 310 aaG~~~sp~lLl~SGIG~ 327 (612)
|+|+|++++.|+++-.++
T Consensus 187 AtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 187 AAGGFESNREWLREAWGQ 204 (466)
T ss_pred CCCCCCCCHHHHHhhcCC
Confidence 999999877777664543
No 18
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.58 E-value=1.8e-14 Score=170.19 Aligned_cols=196 Identities=19% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCCCCCCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceee
Q 007210 72 NGDHHHHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLN 150 (612)
Q Consensus 72 ~~~~~~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (612)
..+|.++.++||||||+|.||++||+++++ |.+|+||||++.
T Consensus 401 ~~~i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~------------------------------------- 443 (1167)
T PTZ00306 401 KKRIAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK------------------------------------- 443 (1167)
T ss_pred ccccccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC-------------------------------------
Confidence 357888999999999999999999999999 999999999873
Q ss_pred cccceecccccccceeeecCChhhhcCCCCChhhhcccchhhhhcc-ccCCCCch------hHHHHHHHHHHcCCCCCCC
Q 007210 151 ARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQI-VHQPKQEG------WQKALRDSLLDVGVSPFNG 223 (612)
Q Consensus 151 ~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~g~~~~~~ 223 (612)
+||+|.+.++.+.......++..+. .+..+.++....... ....+... -.....+|+.+.|++ +..
T Consensus 444 -----~GG~s~~s~ggi~~~~t~~q~~~gi-~D~~~~~~~d~~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~-f~~ 516 (1167)
T PTZ00306 444 -----LGGNSAKATSGINGWGTRAQAKQDV-LDGGKFFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVP-LTV 516 (1167)
T ss_pred -----CCCchhhcccccccCCchhhhhhcc-cccHHHHHHHHHHhccCCCCCHHHHHHHHHhhHHHHHHHHHcCCC-cee
Confidence 3555544433332222222221111 011111111111100 01111110 122344677777764 211
Q ss_pred CcccCCCceecceeEECC---CCce----ecH-HHhhhhc---CCCCcEEEeccEEEEEEecCCC-----CCCeEEEEEE
Q 007210 224 FTYDHIYGTKIGGTIFDR---FGRR----HTA-AELLASA---NPQKITVLIRATVQKIVFDTSG-----KRPKAVGVIF 287 (612)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~---~g~r----~~~-~~~l~~a---~~~g~~v~~~~~V~~l~~~~~g-----~~~~v~GV~~ 287 (612)
. ....+.......... ++.. ... ..+...+ .+.|++|+++++|++|+.++++ ...+|+||++
T Consensus 517 ~--~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~ 594 (1167)
T PTZ00306 517 L--SQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRY 594 (1167)
T ss_pred e--eccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEE
Confidence 0 001111111111111 1110 011 1122222 2369999999999999997521 1138999999
Q ss_pred EeC---CCCeEEEEeecCCCceEEecCCCcCChH
Q 007210 288 KDE---NGNQHQAFLAGNPKSEVILSCGAIGTPQ 318 (612)
Q Consensus 288 ~~~---~g~~~~v~~~~~a~k~VILaaG~~~sp~ 318 (612)
++. +|+.+.+ .+|.||||||+|+...
T Consensus 595 ~~~~~~~g~~~~i-----~AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 595 KQASDASGQVMDL-----LADAVILATGGFSNDH 623 (1167)
T ss_pred EecccCCCcEEEE-----EeceEEEecCCcccCc
Confidence 875 6766665 3599999999999543
No 19
>PRK12839 hypothetical protein; Provisional
Probab=99.58 E-value=3e-14 Score=156.36 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=49.1
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCC-hHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT-PQMLK 321 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~s-p~lLl 321 (612)
++..+.+.|++|+++++|++|+.++++ +|+||++.+.+|+ .++. ++|.||||||+|+. +.++.
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g---~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNG---RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCC---cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHHH
Confidence 445566789999999999999987544 9999999866664 3343 67999999999994 55544
No 20
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.57 E-value=1e-14 Score=162.01 Aligned_cols=199 Identities=19% Similarity=0.277 Sum_probs=111.4
Q ss_pred CCCCCCCCCCCCCCCCCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccc
Q 007210 62 PPSSSSFSPRNGDHHHHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQ 140 (612)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (612)
| .+..|.+...++.++.++||||||||.||++||++|++ |.+|+||||...........
T Consensus 18 ~-~~~~~~~~~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~------------------- 77 (640)
T PRK07573 18 W-DRYKFHLKLVNPANKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIA------------------- 77 (640)
T ss_pred h-hhccccccccCCccccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHH-------------------
Confidence 5 46667776677888889999999999999999999999 99999999976332110000
Q ss_pred cccCCCceeecccceecccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCC------chhHHHHHHHHH
Q 007210 141 YFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQ------EGWQKALRDSLL 214 (612)
Q Consensus 141 ~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 214 (612)
.-||...... +... .++.+.++++..+......+. ........+++.
T Consensus 78 --------------a~GGi~a~~~--~~~~-----------~Ds~~~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~wL~ 130 (640)
T PRK07573 78 --------------AQGGINAAKN--YQND-----------GDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCV 130 (640)
T ss_pred --------------hhhchHhHhh--cccc-----------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0011110000 0000 011122222222211111110 111234557788
Q ss_pred HcCCCCCCCCc----ccCCCceecceeEECC--CCceecH---HHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEE
Q 007210 215 DVGVSPFNGFT----YDHIYGTKIGGTIFDR--FGRRHTA---AELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGV 285 (612)
Q Consensus 215 ~~g~~~~~~~~----~~~~~g~~~~~~~~~~--~g~r~~~---~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV 285 (612)
+.|++...... .....+.......... .|..... ..+...+++.|++|++++.|++|+.+++ +|+||
T Consensus 131 ~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v~~Li~d~g----~V~GV 206 (640)
T PRK07573 131 AQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLVVVDG----RARGI 206 (640)
T ss_pred hcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEEEEEEEeCC----EEEEE
Confidence 88875211100 0011122211112111 1211110 1133345678999999999999998754 99999
Q ss_pred EEEeC-CCCeEEEEeecCCCceEEecCCCcCC
Q 007210 286 IFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 286 ~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
.+.+. +|+...+ .+|.||||||+|+.
T Consensus 207 ~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 233 (640)
T PRK07573 207 VARNLVTGEIERH-----TADAVVLATGGYGN 233 (640)
T ss_pred EEEECCCCcEEEE-----ECCEEEECCCCccc
Confidence 99864 5655555 46899999999986
No 21
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.55 E-value=2.6e-14 Score=153.59 Aligned_cols=63 Identities=24% Similarity=0.435 Sum_probs=49.0
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLK 321 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl 321 (612)
+...+++.|++|+++++|++|+.++++ +|+||++.+.+++...+ ++|.||||+|++. ++.++.
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g---~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG---TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC---cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHHH
Confidence 445567789999999999999997654 89999998655543333 5799999999999 555554
No 22
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.55 E-value=7.6e-14 Score=153.40 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=48.2
Q ss_pred hhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHH
Q 007210 252 LASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 322 (612)
Q Consensus 252 l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~ 322 (612)
...+++.|++|+++++|++|+.+++ +|+||++.. +|+...+. +++.||||||+|.+.+-|+.
T Consensus 215 ~~~~~~~gv~v~~~t~v~~l~~~~g----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 215 RIGLQRAGVPVLLNTPLTDLYVEDG----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHcCCCEEEeCCEEEEEEEeCC----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHH
Confidence 3445678999999999999998754 999999874 56666665 45789999999995544443
No 23
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.54 E-value=9.6e-14 Score=153.27 Aligned_cols=63 Identities=21% Similarity=0.405 Sum_probs=49.6
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
|+..+++.|++|++++.|++|+.+++ +|+||++.. +|+.+.+. ++|.||||||+|+ ++.++..
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHHH
Confidence 45556778999999999999998754 999999874 56555554 5689999999999 5666554
No 24
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.54 E-value=4.4e-14 Score=150.53 Aligned_cols=177 Identities=17% Similarity=0.235 Sum_probs=96.7
Q ss_pred CcccEEEECCCCchHHHHHhhhccCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeecccceecc
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVLGG 158 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Laeg~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG 158 (612)
.+|||||||+|.||++||.+|++|.||+||||++...+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg------------------------------------------ 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC------------------------------------------ 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC------------------------------------------
Confidence 57999999999999999999866999999999974322
Q ss_pred cccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCc------hhHHHHHHHHHHcCCCCCCC---CcccCC
Q 007210 159 GSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQE------GWQKALRDSLLDVGVSPFNG---FTYDHI 229 (612)
Q Consensus 159 ~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~---~~~~~~ 229 (612)
+|.+..+.+..... .++.+.|+++..+......+.. .-.....+++.+.|++.... ..+...
T Consensus 41 ~s~~a~ggi~~~~~---------~d~~~~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~ 111 (433)
T PRK06175 41 NTYLAQGGISVARN---------KDDITSFVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE 111 (433)
T ss_pred chHHHhHhheeCCC---------CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCceeeecc
Confidence 22111111110000 0122233333322211111111 11223446777777642110 001011
Q ss_pred CceecceeEECCCCc-eecHHHhhhhcC-CCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceE
Q 007210 230 YGTKIGGTIFDRFGR-RHTAAELLASAN-PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEV 307 (612)
Q Consensus 230 ~g~~~~~~~~~~~g~-r~~~~~~l~~a~-~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~V 307 (612)
.++.........+.. +.....++..+. +.|++|+++++|++|+.+++ +|+||.+.+ +++.+.+. +|.|
T Consensus 112 g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~----~v~Gv~~~~-~g~~~~i~-----Ak~V 181 (433)
T PRK06175 112 GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN----TCIGAICLK-DNKQINIY-----SKVT 181 (433)
T ss_pred CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC----EEEEEEEEE-CCcEEEEE-----cCeE
Confidence 111111111111111 111122444554 46999999999999998754 899998764 55544553 5899
Q ss_pred EecCCCcCC
Q 007210 308 ILSCGAIGT 316 (612)
Q Consensus 308 ILaaG~~~s 316 (612)
|||||+|+.
T Consensus 182 ILAtGG~~~ 190 (433)
T PRK06175 182 ILATGGIGG 190 (433)
T ss_pred EEccCcccc
Confidence 999999875
No 25
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.53 E-value=1.3e-13 Score=152.61 Aligned_cols=59 Identities=22% Similarity=0.388 Sum_probs=46.8
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCCh
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTP 317 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp 317 (612)
+...+.+.|++|+.++.+++|+.++++ +|+||.+.+. +|+...+ .+|.||||||||+..
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g~~ 252 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDG---ACQGVIALNMEDGTLHRF-----RAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCC---EEEEEEEEEcCCCeEEEE-----EcCeEEECCCCCccc
Confidence 445566679999999999999987444 9999998753 5665555 469999999999853
No 26
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.53 E-value=9.5e-14 Score=152.77 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=44.7
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG 315 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~ 315 (612)
+...+.+.|++|++++.+++|+.+++ +|+||.+.+. +|+...+ .+|.||||||+|+
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNK----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECC----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence 44455567999999999999999754 9999999865 3444444 4699999999998
No 27
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.51 E-value=2.4e-13 Score=150.31 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=47.0
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 321 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl 321 (612)
+...+++.|++|++++.|++|+.+++ +|+||++.+.++ ...+. ++|.||||||+|....-|+
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~~g----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTEGG----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHH
Confidence 33445678999999999999998754 999999985444 33444 5679999999999444444
No 28
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.51 E-value=8.2e-14 Score=153.06 Aligned_cols=181 Identities=18% Similarity=0.233 Sum_probs=101.1
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeeccccee
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVL 156 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (612)
..++||||||+|.||+.||+++ + |.+|+||||++.. .
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~-----------------------------------------~ 42 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFG-----------------------------------------K 42 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCC-----------------------------------------C
Confidence 5679999999999999999999 8 9999999998621 2
Q ss_pred cccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCc------hhHHHHHHHHHHcCCCCCC---C-Ccc
Q 007210 157 GGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQE------GWQKALRDSLLDVGVSPFN---G-FTY 226 (612)
Q Consensus 157 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~---~-~~~ 226 (612)
||++....+.+..... +.++.+.+|++..+......+.. .......+++.+.|++... + +..
T Consensus 43 gG~s~~a~gg~~~~~~--------~~d~~~~~~~d~~~~~~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~ 114 (543)
T PRK06263 43 SGCTVMAEGGYNAVLN--------PEDSFEKHFEDTMKGGAYLNDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQ 114 (543)
T ss_pred CccccccCceEEEeCC--------CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCceee
Confidence 3333333222211100 01122233333222211111111 1122234667777874211 0 000
Q ss_pred cCCCceecceeEECCCCc-eecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCC
Q 007210 227 DHIYGTKIGGTIFDRFGR-RHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPK 304 (612)
Q Consensus 227 ~~~~g~~~~~~~~~~~g~-r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~ 304 (612)
....+..........+.. ......+...+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+.+.+. +
T Consensus 115 ~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~---~v~Gv~~~~~~~g~~~~i~-----A 186 (543)
T PRK06263 115 RPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENR---EVIGAIFLDLRNGEIFPIY-----A 186 (543)
T ss_pred cccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCc---EEEEEEEEECCCCcEEEEE-----c
Confidence 011122111111111110 111122444566689999999999999988653 699999876 567655553 5
Q ss_pred ceEEecCCCcCC
Q 007210 305 SEVILSCGAIGT 316 (612)
Q Consensus 305 k~VILaaG~~~s 316 (612)
|.||||||+|+.
T Consensus 187 kaVIlATGG~~~ 198 (543)
T PRK06263 187 KATILATGGAGQ 198 (543)
T ss_pred CcEEECCCCCCC
Confidence 999999999984
No 29
>PLN02815 L-aspartate oxidase
Probab=99.51 E-value=5e-14 Score=154.61 Aligned_cols=182 Identities=17% Similarity=0.191 Sum_probs=98.9
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeeccccee
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVL 156 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (612)
+.++||||||+|.||+.||++|++ | +|+||||++..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~------------------------------------------ 63 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH------------------------------------------ 63 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC------------------------------------------
Confidence 567999999999999999999999 8 99999999743
Q ss_pred cccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCc------hhHHHHHHHHHHcCCCCCC---C-Ccc
Q 007210 157 GGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQE------GWQKALRDSLLDVGVSPFN---G-FTY 226 (612)
Q Consensus 157 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~---~-~~~ 226 (612)
||+|.+..+.+..... +.++.+.++++..+......+.. .-.....+++.+.|++... + +..
T Consensus 64 gg~s~~a~Ggi~a~~~--------~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~ 135 (594)
T PLN02815 64 ESNTNYAQGGVSAVLD--------PSDSVESHMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHL 135 (594)
T ss_pred CCcHHHhhcccccCCC--------CCCCHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccc
Confidence 2222222221110000 01222333333332221111110 1122334677778874211 0 000
Q ss_pred cCCCceecceeEECC--CCceecHHHhhhhcC-CCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecC
Q 007210 227 DHIYGTKIGGTIFDR--FGRRHTAAELLASAN-PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGN 302 (612)
Q Consensus 227 ~~~~g~~~~~~~~~~--~g~r~~~~~~l~~a~-~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~ 302 (612)
....++......... .|.. ....+...+. ..|++|++++.+++|+.+++++..+|+||.+.+. +|+...+
T Consensus 136 ~~~gg~s~~R~~~~~d~tG~~-i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i----- 209 (594)
T PLN02815 136 AREGGHSHHRIVHAADMTGRE-IERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRF----- 209 (594)
T ss_pred cCCCCCccCceeecCCCCHHH-HHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEE-----
Confidence 111112111111111 1111 1112444443 4599999999999999864331124999998753 5655555
Q ss_pred CCceEEecCCCcCC
Q 007210 303 PKSEVILSCGAIGT 316 (612)
Q Consensus 303 a~k~VILaaG~~~s 316 (612)
.+|.||||||||+.
T Consensus 210 ~AkaVILATGG~g~ 223 (594)
T PLN02815 210 ISKVTLLASGGAGH 223 (594)
T ss_pred EeceEEEcCCccee
Confidence 36999999999974
No 30
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.50 E-value=1.6e-13 Score=151.84 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=46.7
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
++..+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+.+.+ .+|.||||||+|+.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g---~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG---VCRGVVAWNLDDGTLHRF-----RAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC---EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcc
Confidence 445566789999999999999987644 999999864 46665555 36899999999986
No 31
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.50 E-value=1.8e-13 Score=151.72 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=45.9
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+.+.+ .+|.||||||||+.
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG---ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC---EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence 445566789999999999999985444 999999865 35665555 46899999999985
No 32
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.49 E-value=1.2e-13 Score=152.38 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=46.4
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
++..+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+...++ +|.||||||+|+.
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDG---AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCC---EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 445566789999999999999987444 999999864 356655553 5999999999985
No 33
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.49 E-value=8e-14 Score=152.46 Aligned_cols=178 Identities=19% Similarity=0.213 Sum_probs=98.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhccCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeecccceec
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVLG 157 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Laeg~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 157 (612)
+.++||||||+|.||++||+++++|.+|+||||++.. |
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~------------------------------------------g 44 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLK------------------------------------------T 44 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCC------------------------------------------C
Confidence 6789999999999999999999779999999999743 2
Q ss_pred ccccccce-eeecCChhhhcCCCCChhhhcccchhhhhccccCCCCch------hHHHHHHHHHHcCCCCCCCC----cc
Q 007210 158 GGSSINAG-FYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEG------WQKALRDSLLDVGVSPFNGF----TY 226 (612)
Q Consensus 158 G~s~~~~~-~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~----~~ 226 (612)
|+|.+..+ +.....+ .++.+.++++..+......+... -.....+++.+.|++ +... ..
T Consensus 45 g~s~~a~Ggi~a~~~~---------~ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~wL~~~Gv~-f~~~~~~~~~ 114 (553)
T PRK07395 45 SASDWAQGGIAAAIAP---------DDSPKLHYEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEMGVA-FDRHGQHLAL 114 (553)
T ss_pred CchhhhcccceecccC---------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCCe-eecCCCceee
Confidence 22222221 1111111 01222233333222211111110 122234677777774 2110 00
Q ss_pred cCCCceecceeEECCCCc-eecHHHhhhhcC-CCCcEEEeccEEEEEEecC-CCCCCeEEEEEEEeCCCCeEEEEeecCC
Q 007210 227 DHIYGTKIGGTIFDRFGR-RHTAAELLASAN-PQKITVLIRATVQKIVFDT-SGKRPKAVGVIFKDENGNQHQAFLAGNP 303 (612)
Q Consensus 227 ~~~~g~~~~~~~~~~~g~-r~~~~~~l~~a~-~~g~~v~~~~~V~~l~~~~-~g~~~~v~GV~~~~~~g~~~~v~~~~~a 303 (612)
....+..........+.. +.....+...+. +.|++|++++.|++|+.++ ++ +|+||.+.+ +|....+ .
T Consensus 115 ~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g---~v~Gv~~~~-~g~~~~i-----~ 185 (553)
T PRK07395 115 TLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETG---RCQGISLLY-QGQITWL-----R 185 (553)
T ss_pred ecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCC---EEEEEEEEE-CCeEEEE-----E
Confidence 001111111111111110 111122444443 4699999999999999874 24 999999874 6655444 4
Q ss_pred CceEEecCCCcCC
Q 007210 304 KSEVILSCGAIGT 316 (612)
Q Consensus 304 ~k~VILaaG~~~s 316 (612)
+|.||||||+|+.
T Consensus 186 AkaVILATGG~~~ 198 (553)
T PRK07395 186 AGAVILATGGGGQ 198 (553)
T ss_pred cCEEEEcCCCCcc
Confidence 6999999999864
No 34
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.47 E-value=7.4e-13 Score=146.34 Aligned_cols=62 Identities=16% Similarity=0.320 Sum_probs=47.4
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 321 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl 321 (612)
+...+++.|++|+++++|++|+.+++ +|+||++.+. +....+. ++|.||||||+|....-|+
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~~g----~v~GV~~~~~-~~~~~i~----a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLREDG----RVAGAVVETP-GGLQEIR----ARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCC----EEEEEEEEEC-CcEEEEE----eCCEEEEcCCCcccCHHHH
Confidence 44556778999999999999998753 9999999753 4444454 4599999999999544443
No 35
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.46 E-value=5.8e-13 Score=145.85 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=99.3
Q ss_pred CCcccEEEECCCCchHHHHHhhhccCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeecccceec
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVLG 157 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Laeg~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 157 (612)
+.++||||||+|.||+.||++|+++.+|+||||+... |
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~------------------------------------------~ 43 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLS------------------------------------------E 43 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCC------------------------------------------C
Confidence 5679999999999999999999998899999998732 3
Q ss_pred ccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCc------hhHHHHHHHHHHcCCCCCCCC-------
Q 007210 158 GGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQE------GWQKALRDSLLDVGVSPFNGF------- 224 (612)
Q Consensus 158 G~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~------- 224 (612)
|+|.+..+.+..... +.++.+.++++..+......+.. .-.....+++++.|++ +...
T Consensus 44 g~t~~a~Ggi~~~~~--------~~ds~e~~~~d~~~~g~~~~d~~~v~~~~~~~~~~i~~L~~~Gv~-f~~~~~~~g~~ 114 (536)
T PRK09077 44 GSTFYAQGGIAAVLD--------ETDSIESHVEDTLIAGAGLCDEDAVRFIAENAREAVQWLIDQGVP-FTTDEQANGEE 114 (536)
T ss_pred CChhhccCCeeeccC--------CCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHcCCc-cccCCCCCccc
Confidence 333332221111100 01222233333322211111100 0122234677777864 2110
Q ss_pred --cccCCCceecceeEECCCCceecH-HHhhhhc-CCCCcEEEeccEEEEEEecC-----CCCCCeEEEEEEEeC-CCCe
Q 007210 225 --TYDHIYGTKIGGTIFDRFGRRHTA-AELLASA-NPQKITVLIRATVQKIVFDT-----SGKRPKAVGVIFKDE-NGNQ 294 (612)
Q Consensus 225 --~~~~~~g~~~~~~~~~~~g~r~~~-~~~l~~a-~~~g~~v~~~~~V~~l~~~~-----~g~~~~v~GV~~~~~-~g~~ 294 (612)
......+......+...+...... ..+...+ +.+|++|++++.|++|+.++ ++ +|+||.+.+. +|+.
T Consensus 115 ~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g---~v~Gv~~~~~~~g~~ 191 (536)
T PRK09077 115 GYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR---RVVGAYVLNRNKERV 191 (536)
T ss_pred cccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC---EEEEEEEEECCCCcE
Confidence 000111111111111111110111 1244444 34699999999999999864 23 9999999764 4655
Q ss_pred EEEEeecCCCceEEecCCCcCC
Q 007210 295 HQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 295 ~~v~~~~~a~k~VILaaG~~~s 316 (612)
..+ .+|.||||+|+++.
T Consensus 192 ~~i-----~Ak~VVlATGG~~~ 208 (536)
T PRK09077 192 ETI-----RAKFVVLATGGASK 208 (536)
T ss_pred EEE-----ecCeEEECCCCCCC
Confidence 555 46999999999974
No 36
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.45 E-value=7.6e-13 Score=145.99 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=43.7
Q ss_pred hhhhcCC-CCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANP-QKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~-~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
++..+.+ .|+++++++.|++|+.+++ +|+||.+.+ .+|+...+ .+|.||||+|+++.
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~ 197 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILVDDG----HVRGLVAMNMMEGTLVQI-----RANAVVMATGGAGR 197 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEEeCC----EEEEEEEEEcCCCcEEEE-----ECCEEEECCCCCcC
Confidence 3344433 5899999999999998754 999999864 35654555 46999999999884
No 37
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.44 E-value=7.8e-13 Score=146.10 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=40.4
Q ss_pred CcEEEeccEEEEEEecCCCCCCeEEEEEEEeCC-CCeEEEEeecCCCceEEecCCCcCC
Q 007210 259 KITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 259 g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~-g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+++|+.++.+++|+.++++ +|+||.+.+.. ++...+ .+|.||||||||+.
T Consensus 151 ~i~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG---VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC---EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence 4899999999999987544 99999998753 443444 47999999999985
No 38
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.44 E-value=7e-13 Score=145.26 Aligned_cols=180 Identities=16% Similarity=0.132 Sum_probs=98.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeeccccee
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVL 156 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (612)
+.++||||||+|.||+.||++|++ |.+|+||||+....
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~----------------------------------------- 52 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD----------------------------------------- 52 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC-----------------------------------------
Confidence 678999999999999999999999 99999999997432
Q ss_pred cccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCc------hhHHHHHHHHHHcCCCCCCCC----cc
Q 007210 157 GGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQE------GWQKALRDSLLDVGVSPFNGF----TY 226 (612)
Q Consensus 157 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~----~~ 226 (612)
|+|.+..+.+..... +.++.+.++++..+......+.. .......+++.+.|++..... ..
T Consensus 53 -g~s~~a~Ggi~a~~~--------~~ds~e~~~~d~~~~g~g~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~ 123 (541)
T PRK07804 53 -GSTRWAQGGIAAVLD--------PGDSPEAHVADTLVAGAGLCDPDAVRSLVAEGPRAVRELVALGARFDESPDGRWAL 123 (541)
T ss_pred -CchhhhccceeeccC--------CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCcEee
Confidence 222222111110000 00122223333322221111110 011223467777787421100 00
Q ss_pred cCCCceecceeEECCCCceec--H-HHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC----CCCeEEEEe
Q 007210 227 DHIYGTKIGGTIFDRFGRRHT--A-AELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE----NGNQHQAFL 299 (612)
Q Consensus 227 ~~~~g~~~~~~~~~~~g~r~~--~-~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~----~g~~~~v~~ 299 (612)
....++....... ..+.... . ..|...+++.+++|++++.|++|+.++++ +|+||.+.+. ++....+
T Consensus 124 ~~~~g~~~~r~~~-~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g---~v~Gv~~~~~~~~~~~g~~~i-- 197 (541)
T PRK07804 124 TREGGHSRRRIVH-AGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG---AVAGVTLHVLGEGSPDGVGAV-- 197 (541)
T ss_pred eccCCeecCeeEe-cCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC---eEEEEEEEeccCCCCCcEEEE--
Confidence 0111221111111 1111111 1 12445566678999999999999987654 9999998731 2223344
Q ss_pred ecCCCceEEecCCCcCC
Q 007210 300 AGNPKSEVILSCGAIGT 316 (612)
Q Consensus 300 ~~~a~k~VILaaG~~~s 316 (612)
.+|.||||+|+++.
T Consensus 198 ---~Ak~VIlATGG~~~ 211 (541)
T PRK07804 198 ---HAPAVVLATGGLGQ 211 (541)
T ss_pred ---EcCeEEECCCCCCC
Confidence 46999999999874
No 39
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.44 E-value=6.6e-13 Score=146.72 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=45.6
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
++..+.+.|++|+.++.|++|+.++++ +|+||.+.+. +|+...+ .+|.||||||+++.
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDADG---DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCCC---eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence 445556689999999999999987544 9999998753 4544444 47999999999985
No 40
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.43 E-value=7.2e-13 Score=147.58 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=46.2
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+.+.|++|+.++.|++|+.+++ +|+||.+.+ .+|+.+.+ .+|.||||||+|+.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g----~v~Gv~~~~~~~G~~~~i-----~AkaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGK----RCYGAVVRCLITGELRAY-----VAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECC----EEEEEEEEEcCCCcEEEE-----EcCeEEECCCcccC
Confidence 33446678999999999999998754 999999986 46765555 36999999999984
No 41
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.42 E-value=1.2e-12 Score=142.41 Aligned_cols=56 Identities=25% Similarity=0.451 Sum_probs=44.3
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+. .|++|++++.|++|+.+++ +|+||.+.+.+|+...+ .+|.||||||+++.
T Consensus 136 L~~~~~-~gV~i~~~~~v~~Li~~~g----~v~Gv~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 191 (510)
T PRK08071 136 LLQELV-PHVTVVEQEMVIDLIIENG----RCIGVLTKDSEGKLKRY-----YADYVVLASGGCGG 191 (510)
T ss_pred HHHHHh-cCCEEEECeEhhheeecCC----EEEEEEEEECCCcEEEE-----EcCeEEEecCCCcc
Confidence 334444 6999999999999998754 99999998766665555 36999999999985
No 42
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.41 E-value=1.6e-12 Score=143.04 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=44.3
Q ss_pred hhhhc-CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a-~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+ +..|++++.++.|++|+.+++ +|+||.+.+ .+|+...+ .+|.||||+|+++.
T Consensus 138 L~~~~~~~~~i~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 196 (580)
T TIGR01176 138 LFQTSLTYPQIMRYDEWFVTDLLVDDG----RVCGLVAIEMAEGRLVTI-----LADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHhcCCCEEEeCeEEEEEEeeCC----EEEEEEEEEcCCCcEEEE-----ecCEEEEcCCCCcc
Confidence 34444 336899999999999998754 999999865 35665555 46999999999884
No 43
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=1.6e-12 Score=143.55 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=44.9
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
|...+.+.|++|++++.|++|+.+++ +|+||.+.+ .+|+...+ .+|.||||||+++.
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN----QAKGVVMYHIADGRLEVV-----RAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC----EEEEEEEEEcCCCeEEEE-----ECCEEEECCCCCcC
Confidence 55556678999999999999998754 999998754 35554445 46999999999875
No 44
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=1.9e-12 Score=143.25 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=43.8
Q ss_pred hhhhcCC-CCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANP-QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~-~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
++..+.+ .|++|+.++.|++|+.+++ +|+||.+.+. +|+...+ .+|.||||||+++.
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~ 201 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENG----VFKGVTAIDLKRGEFKVF-----QAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECC----EEEEEEEEEcCCCeEEEE-----ECCcEEEcCchhcc
Confidence 4444433 6999999999999998764 9999998753 5554444 46999999999974
No 45
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=1.1e-12 Score=145.92 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=39.6
Q ss_pred cEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCCh
Q 007210 260 ITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTP 317 (612)
Q Consensus 260 ~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~sp 317 (612)
++|++++.|++|+.+++ +|+||.+.+ .+|+...+ .+|.||||||+++..
T Consensus 166 v~i~~~~~v~~L~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 166 IKVFAECTITELLKDGG----RIAGAFGYWRESGRFVLF-----EAPAVVLATGGIGKS 215 (626)
T ss_pred eEEEeCCEEEEEEEECC----EEEEEEEEECCCCeEEEE-----EcCeEEECCCcccCC
Confidence 99999999999998754 999998865 35655555 468999999998853
No 46
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.38 E-value=4.4e-12 Score=137.64 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=43.7
Q ss_pred hhhhcCC-CCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANP-QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~-~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
|...+++ .|++|++++.|++|+.+++ +|+||.+.+. +....+ .+|.||||+|+++.
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence 4445554 7999999999999998754 8999998864 443444 46999999999975
No 47
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=4.1e-12 Score=140.51 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=45.1
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCC---CCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTS---GKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~---g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+.+.|++|++++.|++|+.+++ + +|+||.+.+ .+|+.+.+ .+|.||||||+++.
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g---~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP---VAAGVVAYELATGEIHVF-----HAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCC---cEEEEEEEEcCCCeEEEE-----EeCeEEECCCCCcc
Confidence 44556678999999999999998752 3 999999864 35554455 35999999999984
No 48
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.36 E-value=5.5e-12 Score=139.66 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=44.8
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+.+.|++|++++.|++|+.+++ +|+||.+.+. +|+...+ .+|.||||+|+++.
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDG----RVRGVVAYDLKTGEIVFF-----RAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCC----EEEEEEEEECCCCcEEEE-----ECCeEEECCCcccC
Confidence 44555566999999999999998754 9999998753 5654455 36999999999874
No 49
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.34 E-value=6.5e-12 Score=138.93 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=42.5
Q ss_pred CCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCC
Q 007210 257 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 257 ~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+.|++|+++++|++|+.++++ +|+||.+.+. +|+...+ .+|.||||||||+.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g---rV~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN---RARGIIARNLVTGEIETH-----SADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC---EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcC
Confidence 458999999999999987654 9999999864 4654555 46899999999975
No 50
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=124.26 Aligned_cols=168 Identities=20% Similarity=0.307 Sum_probs=97.6
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeecccceec
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVLG 157 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 157 (612)
+.+||||||+|+||+.||..+++ |.+|+|||+++.....-.+ .+-|
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~---------------------------------sGgG 48 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILM---------------------------------SGGG 48 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEe---------------------------------cCCC
Confidence 46899999999999999999999 9999999999855321100 0112
Q ss_pred ccccccceeeecCChhhhcCCCCChhhhcccchhhhhccccCCCCchhHHHHHHHHHHcCCCCCCCCcccCCCceeccee
Q 007210 158 GGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGT 237 (612)
Q Consensus 158 G~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 237 (612)
++..-|... ..++..+.+=.-..+.+.+.+. -...++++++.+|+..+.. .. | .
T Consensus 49 rCN~Tn~~~----~~~~ls~~p~~~~fl~sal~~f------------t~~d~i~~~e~~Gi~~~e~-----~~----G-r 102 (408)
T COG2081 49 RCNFTNSEA----PDEFLSRNPGNGHFLKSALARF------------TPEDFIDWVEGLGIALKEE-----DL----G-R 102 (408)
T ss_pred Ccccccccc----HHHHHHhCCCcchHHHHHHHhC------------CHHHHHHHHHhcCCeeEEc-----cC----c-e
Confidence 222222211 1111111000001111111111 1345778888888753211 11 1 2
Q ss_pred EECCCCceecHH-HhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 238 IFDRFGRRHTAA-ELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 238 ~~~~~g~r~~~~-~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
.+|...+.+... .++..+++.|++|+++++|..|..++. +..+..++|+ ++ .++.+|||+||..-
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-------~f~l~t~~g~--~i-----~~d~lilAtGG~S~ 168 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-------GFRLDTSSGE--TV-----KCDSLILATGGKSW 168 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-------eEEEEcCCCC--EE-----EccEEEEecCCcCC
Confidence 222322222232 366778889999999999999998763 2333435675 33 35899999999888
Q ss_pred hHH
Q 007210 317 PQM 319 (612)
Q Consensus 317 p~l 319 (612)
|++
T Consensus 169 P~l 171 (408)
T COG2081 169 PKL 171 (408)
T ss_pred CCC
Confidence 865
No 51
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.32 E-value=8.7e-12 Score=135.80 Aligned_cols=56 Identities=30% Similarity=0.500 Sum_probs=42.7
Q ss_pred hhhhcCC-CCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANP-QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~-~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+.+ .|++|+.++.|++|+.+++ +|+||.+.+ ++....+ .+|.||||||+|+.
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~g----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDDG----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecCC----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCcC
Confidence 4444544 5999999999999987754 999999875 3433344 36899999999974
No 52
>PRK08275 putative oxidoreductase; Provisional
Probab=99.32 E-value=8.2e-12 Score=137.52 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=44.9
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+++.|++|++++.|++|+.++++ +++||.+.+ .+|+...+ .+|.||||||+++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g---~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~ 201 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG---RVAGALGFDCRTGEFLVI-----RAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC---eEEEEEEEecCCCcEEEE-----ECCEEEECCCCccc
Confidence 445566789999999999999987444 899999864 35654444 46899999999863
No 53
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.30 E-value=2.2e-11 Score=133.87 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=42.0
Q ss_pred cCCCCcEEEeccEEEEEEecCC--CCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 255 ANPQKITVLIRATVQKIVFDTS--GKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 255 a~~~g~~v~~~~~V~~l~~~~~--g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+.+.+++|+.++.|++|+.+++ | +|+||.+.+ .+|+.+.+ .+|.||||||+++.
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~~G---rV~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 192 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNTPN---RIAGAVGFNVRANEVHVF-----KAKTVIVAAGGAVN 192 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCCCC---eEEEEEEEEeCCCcEEEE-----ECCEEEECCCcccc
Confidence 3445689999999999998752 3 999999865 35655555 36999999999863
No 54
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.29 E-value=5.5e-12 Score=131.98 Aligned_cols=186 Identities=23% Similarity=0.295 Sum_probs=84.6
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeecccceeccc
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVLGGG 159 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~ 159 (612)
|||||||+|+||++||+.|++ |.+|+||||+..... +.+ .-|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk-----------Kil------------------------~tG~- 44 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK-----------KIL------------------------ITGN- 44 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H-----------HHH------------------------HCGG-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc-----------cee------------------------ecCC-
Confidence 899999999999999999999 999999999975421 000 1121
Q ss_pred ccccceeeecCChhhh-cCCCCChhhhcccchhhhhccccCCCCchhHHHHHHHHHHcCCCCCCCCcccCCCceecceeE
Q 007210 160 SSINAGFYTRASSQFI-ERMGWDAKLVNESFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTI 238 (612)
Q Consensus 160 s~~~~~~~~r~~~~~~-~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 238 (612)
.-.|..-. ......+ ...+-..+.+.+.++.. ....+.+.+.+.|++... ...+ .+
T Consensus 45 GrCN~tn~-~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~-----~~~g-----r~ 101 (409)
T PF03486_consen 45 GRCNLTNL-NIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKI-----EEDG-----RV 101 (409)
T ss_dssp GT-EEEET-TSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE------STT-----EE
T ss_pred CCcccccc-ccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEE-----cCCC-----EE
Confidence 11221100 1111111 11000000011111110 123456778888875210 0011 12
Q ss_pred ECCCCceecHH-HhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCCh
Q 007210 239 FDRFGRRHTAA-ELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTP 317 (612)
Q Consensus 239 ~~~~g~r~~~~-~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp 317 (612)
++...+..+.. .|+..+++.|++|+++++|+.|..+++ .+..|+.. ++.. +. ++.||||+|+..-|
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~----~~f~v~~~--~~~~--~~-----a~~vILAtGG~S~p 168 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED----GVFGVKTK--NGGE--YE-----ADAVILATGGKSYP 168 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT----EEEEEEET--TTEE--EE-----ESEEEE----SSSG
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC----ceeEeecc--Cccc--cc-----CCEEEEecCCCCcc
Confidence 22222222222 255667788999999999999998876 77778772 3332 22 59999999998888
Q ss_pred HHHHHcCCCChhhhhhCCceeee
Q 007210 318 QMLKLSGVGPKAELEKLNISVVL 340 (612)
Q Consensus 318 ~lLl~SGIG~~~~L~~~GI~~~~ 340 (612)
++ =-+|-| -..++++|+.++.
T Consensus 169 ~~-GS~G~g-y~~a~~lGh~i~~ 189 (409)
T PF03486_consen 169 KT-GSDGSG-YRIAKKLGHTITP 189 (409)
T ss_dssp GG-T-SSHH-HHHHHHTT--EEE
T ss_pred cc-CCCcHH-HHHHHHCCCcEec
Confidence 74 112222 1334556655443
No 55
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.28 E-value=3e-11 Score=133.96 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=42.5
Q ss_pred hhhhcCCC-CcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQ-KITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~-g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+++. |++|+.++.|++|+.+++ +|+||.+.+ .+|+...+ .+|.||||||+++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 196 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDN----RIAGAVGFSVRENKFYVF-----KAKAVIVATGGAAG 196 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCC----EEEEEEEEEccCCcEEEE-----ECCEEEECCCchhh
Confidence 33445444 599999999999998764 999998754 34554444 46999999999873
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.24 E-value=4.1e-11 Score=138.87 Aligned_cols=40 Identities=40% Similarity=0.528 Sum_probs=36.1
Q ss_pred CCCCCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 74 DHHHHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 74 ~~~~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
++.++.+|||||||||.||+.||+++++ |.+|+||||+..
T Consensus 7 ~~~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 7 TDALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred CCcceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4455778999999999999999999999 999999999973
No 57
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.19 E-value=5.5e-11 Score=128.94 Aligned_cols=212 Identities=22% Similarity=0.210 Sum_probs=113.5
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCceeeccccee
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVLNARARVL 156 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (612)
..+|||||||+|.|||.||.++++ |.+|+||||.....+.+ .. ..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t-~~---------------------------------a~ 49 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT-VA---------------------------------AQ 49 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch-hh---------------------------------hc
Confidence 568999999999999999999999 99999999997543211 00 11
Q ss_pred cccccccceeeecC-----Chhhh-----cCCCCCh-hhhcccchhhhhccccCCCCchhHHHHHHHHHHcCCCCCC---
Q 007210 157 GGGSSINAGFYTRA-----SSQFI-----ERMGWDA-KLVNESFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFN--- 222 (612)
Q Consensus 157 GG~s~~~~~~~~r~-----~~~~~-----~~~gw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 222 (612)
|| +|....... +++++ ...+|.. +++..+|.+ ........+++.|.+...
T Consensus 50 gG---~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd~i~~~~~-------------~ap~~v~~Le~~G~~f~r~~~ 113 (562)
T COG1053 50 GG---INAALGNTVDVEGDSPELHFYDTVKGGDGLGDQDAVEAFAD-------------EAPEAVDELEKWGVPFSRTED 113 (562)
T ss_pred cc---ccccccCcccccCCCHHHHHHHHHhccCCcCCHHHHHHHHH-------------hhHHHHHHHHHhCCCcccCCC
Confidence 22 222221110 11111 0112221 111111110 112234666777764211
Q ss_pred C-CcccCCCceecceeEECCCCceecH---HHhhhhcCC-CCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCC-CCeEE
Q 007210 223 G-FTYDHIYGTKIGGTIFDRFGRRHTA---AELLASANP-QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQ 296 (612)
Q Consensus 223 ~-~~~~~~~g~~~~~~~~~~~g~r~~~---~~~l~~a~~-~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~-g~~~~ 296 (612)
+ .......+.+...+. ..+.+... ..+...+.+ .+++++.+..+.+|+.++++ ++.||...+.+ |+.+.
T Consensus 114 G~~~~r~fgg~~~~rt~--~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~---~v~Gvv~~~~~~g~~~~ 188 (562)
T COG1053 114 GRIYQRRFGGHSKPRTC--FAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG---GVAGVVARDLRTGELYV 188 (562)
T ss_pred ccccccccCCcCCCcce--ecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC---cEEEEEEEEecCCcEEE
Confidence 1 111223333322222 12222111 123444444 67899999999999998764 59999988654 55444
Q ss_pred EEeecCCCceEEecCCCcC-----ChHHHHHcCCCChhhhhhCCceeeecCcccccccccCCCc
Q 007210 297 AFLAGNPKSEVILSCGAIG-----TPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMN 355 (612)
Q Consensus 297 v~~~~~a~k~VILaaG~~~-----sp~lLl~SGIG~~~~L~~~GI~~~~~~p~VG~nl~dh~~~ 355 (612)
+ .+|.||||||+++ ++......|-|- ....+.|.++. ..++.|-||..
T Consensus 189 ~-----~akavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~aGa~l~-----dme~~Q~hpt~ 241 (562)
T COG1053 189 F-----RAKAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYRAGAPLI-----DMEFVQFHPTG 241 (562)
T ss_pred E-----ecCcEEEccCCceEEEeccCCccccCCcHH-HHHHhcCCccc-----CCCccccccce
Confidence 4 3599999999998 444444333221 22334555421 34466777753
No 58
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.17 E-value=9.4e-11 Score=125.62 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=45.6
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecC-CCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDT-SGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~-~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
+...+++.|++|+++++|++|+.++ ++ +++||...+ ++ ..+ .+|.||||+|+|+ ++.++.+
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g---~v~gv~~~~-~~--~~i-----~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDG---AHDGPLTTV-GT--HRI-----TTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCC---eEEEEEEcC-Cc--EEE-----EcCEEEEcCCCcccCHHHHHh
Confidence 5556677899999999999999873 33 899998742 22 334 3589999999999 5555544
No 59
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.16 E-value=2.5e-10 Score=112.60 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+|||||||+|++|+++|++|++ |.+|+||||..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 457999999999999999999999 99999999986
No 60
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.14 E-value=2e-10 Score=106.11 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=30.0
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+|||+|||+|++|+++|+.|++ |+||+|+|+..
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~ 50 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL 50 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence 457999999999999999999999 99999999985
No 61
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.12 E-value=4.5e-10 Score=123.37 Aligned_cols=65 Identities=14% Similarity=0.260 Sum_probs=48.9
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
+...+.+.|++|+++++|+.|..+++ +++||++.+. .++...+. ++.||+|||.+ +.+|+...|+
T Consensus 155 l~~~A~~~Ga~i~~~t~V~~i~~~~~----~v~gv~v~d~~~g~~~~i~-----A~~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 155 NMLDAKEHGAQILTYHEVTGLIREGD----TVCGVRVRDHLTGETQEIH-----APVVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HHHHHHhCCCEEEeccEEEEEEEcCC----eEEEEEEEEcCCCcEEEEE-----CCEEEECCChh-HHHHHHhcCC
Confidence 33456778999999999999988764 8999998753 34445553 68999999975 6777665543
No 62
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.12 E-value=3.4e-10 Score=103.69 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+.||||||+|++|++||++||+ |.||+|+||--
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 346799999999999999999999 99999999974
No 63
>PLN02661 Putative thiazole synthesis
Probab=99.10 E-value=6.2e-10 Score=112.30 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=33.3
Q ss_pred CCCCcccEEEECCCCchHHHHHhhhc--cCeeeEeecCC
Q 007210 76 HHHSAFDYIVVGGGTAGCPLAATLSQ--NFTVLLLERGG 112 (612)
Q Consensus 76 ~~~~~~DvIVVGsG~aG~~aA~~Lae--g~~VlvLEkG~ 112 (612)
.+..++||||||+|++|+++|+.|++ |.+|+||||+.
T Consensus 88 ~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 88 ITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 44567999999999999999999996 79999999975
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.10 E-value=3.6e-10 Score=111.14 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=46.4
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC----CC---CeEEEEeecCCCceEEecCCCcC-ChHHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE----NG---NQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 322 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~----~g---~~~~v~~~~~a~k~VILaaG~~~-sp~lLl~ 322 (612)
++..+.+.|++|+.++.|++|+.+++. .+|+||.+... +| +...+ .+|.||.|+|... ..++|.+
T Consensus 106 L~~~a~e~GV~I~~~t~V~dli~~~~~--~~V~GVv~~~~~v~~~g~~~d~~~i-----~Ak~VVdATG~~a~v~~~l~~ 178 (254)
T TIGR00292 106 LASKALQAGAKIFNGTSVEDLITRDDT--VGVAGVVINWSAIELAGLHVDPLTQ-----RSRVVVDATGHDAEIVAVCAK 178 (254)
T ss_pred HHHHHHHcCCEEECCcEEEEEEEeCCC--CceEEEEeCCccccccCCCCCCEEE-----EcCEEEEeecCCchHHHHHHH
Confidence 445566679999999999999987542 37999987421 12 23445 4699999999765 5556554
Q ss_pred c
Q 007210 323 S 323 (612)
Q Consensus 323 S 323 (612)
-
T Consensus 179 ~ 179 (254)
T TIGR00292 179 K 179 (254)
T ss_pred H
Confidence 4
No 65
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.08 E-value=5.4e-10 Score=120.58 Aligned_cols=32 Identities=34% Similarity=0.554 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+||||||+|.||+.||++|++ |.+|+||||++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999 99999999985
No 66
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.04 E-value=1.8e-09 Score=110.89 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=44.4
Q ss_pred hhhhc-CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC
Q 007210 251 LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 315 (612)
Q Consensus 251 ~l~~a-~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~ 315 (612)
++..+ +++|++|+.++.+.+|+.+++. .+.||.+.+.+++...+ .++.|||||||++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~---~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI---GVAGVLVLNRNGELGTF-----RAKAVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc---eEeEEEEecCCCeEEEE-----ecCeEEEecCCCc
Confidence 55555 4589999999999999999862 55699998654434445 4699999999985
No 67
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.02 E-value=7e-10 Score=115.74 Aligned_cols=59 Identities=31% Similarity=0.430 Sum_probs=43.2
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 324 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SG 324 (612)
+...+++.|++|+++++|++|..+++ +++||... +|+ +. ++.||+|+|. .+++|+..+|
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~----~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGG----RVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETT----EEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTT
T ss_pred hHHHHHHhhhhccccccccchhhccc----cccccccc--ccc---cc-----cceeEecccc-cceeeeeccc
Confidence 34455667999999999999999876 89999874 553 33 5999999996 6787777664
No 68
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.01 E-value=8.5e-10 Score=106.27 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=44.7
Q ss_pred CCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC-ChHHHH
Q 007210 258 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLK 321 (612)
Q Consensus 258 ~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl 321 (612)
.-++|.+|++|++|+.+++ +|.||++.|.+|+...+ ....||||+|+|+ |-+-||
T Consensus 158 e~~ki~~nskvv~il~n~g----kVsgVeymd~sgek~~~-----~~~~VVlatGGf~ysd~~lL 213 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRNNG----KVSGVEYMDASGEKSKI-----IGDAVVLATGGFGYSDKELL 213 (477)
T ss_pred HHHhhhhcceeeeeecCCC----eEEEEEEEcCCCCccce-----ecCceEEecCCcCcChHHHH
Confidence 4589999999999996654 99999999988877655 3589999999999 534443
No 69
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.01 E-value=8e-09 Score=100.12 Aligned_cols=36 Identities=42% Similarity=0.519 Sum_probs=33.1
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
..++||||||+|.+|+++|.+||+ |.+|++||.-+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 457999999999999999999999 999999998763
No 70
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.98 E-value=6.5e-09 Score=107.93 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=49.4
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCCCh
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPK 328 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~~ 328 (612)
|...+.+.|++|.+|++|++|..+++| ++-+.. .+|++. + .+|.||.|||. .+-+|+.++|+.+.
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~dg----~~~~~~--~~g~~~-~-----~ak~Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSDG----VFVLNT--SNGEET-L-----EAKFVINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCCc----eEEEEe--cCCcEE-E-----EeeEEEECCch-hHHHHHHHhCCCcc
Confidence 556667779999999999999987762 333333 356554 4 36999999996 68899999998764
No 71
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.97 E-value=1.9e-09 Score=119.82 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=49.4
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecC-CCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCChHHHHHcC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDT-SGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 324 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~-~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SG 324 (612)
++..+.+.|++|+.+++|++|..++ ++ +++||.+.+. +++.+.+. ++.||+|||++ +.+|+...|
T Consensus 238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g---~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 238 LACTAALAGAAVLNYAEVVSLIKDESTG---RIVGARVRDNLTGKEFDVY-----AKVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHHHHHhCCcEEEeccEEEEEEEecCCC---cEEEEEEEECCCCcEEEEE-----eCEEEECCCHh-HHHHHHhcc
Confidence 4456777899999999999998874 33 8999998764 35544553 69999999985 677776554
No 72
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.96 E-value=2.3e-10 Score=122.05 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=0.0
Q ss_pred hcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 254 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 254 ~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
.+.+.|++|++++.|..++.+++ +|+||++.++.| ..++ .+|.||-|+|- -.|+-++|+
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG~---g~l~~~aG~ 157 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG----RITGVIVETKSG-RKEI-----RAKVFIDATGD---GDLAALAGA 157 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc----cccccccccccc-cccc-----ccccccccccc---ccccccccc
Confidence 34668999999999999999865 999999987666 5555 47999999993 477777765
No 73
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.92 E-value=6.9e-09 Score=113.14 Aligned_cols=38 Identities=29% Similarity=0.583 Sum_probs=34.4
Q ss_pred CCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 77 HHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 77 ~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
|+.+|||||||+|..|+.+|+.|+. |+||+||||+...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~ 41 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA 41 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3567999999999999999999999 9999999998643
No 74
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.90 E-value=3.3e-08 Score=106.66 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=45.7
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 326 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG 326 (612)
|...+.+.|++|+++++|++|..++++ .++ |.+.+ ..|+..++ .++.||+|||+ .+.+|+...|+.
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~---~v~-v~~~~~~~g~~~~i-----~A~~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQSDG---SWT-VTVKNTRTGGKRTL-----NTRFVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC---eEE-EEEeeccCCceEEE-----ECCEEEECCCc-chHHHHHHcCCC
Confidence 455666789999999999999876442 332 33332 23433344 36999999998 578888888775
No 75
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.86 E-value=3.5e-08 Score=105.11 Aligned_cols=35 Identities=37% Similarity=0.603 Sum_probs=31.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc--c-CeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ--N-FTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae--g-~~VlvLEkG~ 112 (612)
...|||||||+|..|+++|+.|++ | .+|+||||..
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 357999999999999999999997 7 4999999975
No 76
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.85 E-value=2.2e-08 Score=107.81 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=45.1
Q ss_pred hhhhcCC----CC--cEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcC
Q 007210 251 LLASANP----QK--ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 324 (612)
Q Consensus 251 ~l~~a~~----~g--~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SG 324 (612)
|...+++ .| ++|+++++|+.|..+++ .+..|.. .+| .+. ++.||+|||+ .+.+|+..+|
T Consensus 217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~----~~~~V~T--~~G---~i~-----A~~VVvaAG~-~S~~La~~~G 281 (497)
T PTZ00383 217 FVKHARRDALVPGKKISINLNTEVLNIERSND----SLYKIHT--NRG---EIR-----ARFVVVSACG-YSLLFAQKMG 281 (497)
T ss_pred HHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC----CeEEEEE--CCC---EEE-----eCEEEECcCh-hHHHHHHHhC
Confidence 5555666 56 89999999999987644 4455554 345 233 5899999998 4888999998
Q ss_pred CC
Q 007210 325 VG 326 (612)
Q Consensus 325 IG 326 (612)
++
T Consensus 282 i~ 283 (497)
T PTZ00383 282 YG 283 (497)
T ss_pred CC
Confidence 75
No 77
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.82 E-value=3e-08 Score=108.19 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=44.3
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 321 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl 321 (612)
++..+.+.|++++.+++|+.|..+++ ..+|.+.+..|++.++. ++.||.|||.+ +.+++.
T Consensus 161 l~~~a~~~Ga~i~~~~~V~~i~~~~~-----~~~v~~~~~~g~~~~i~-----a~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 161 NALDAAERGATILTRTRCVSARREGG-----LWRVETRDADGETRTVR-----ARALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHHHHHCCCEEecCcEEEEEEEcCC-----EEEEEEEeCCCCEEEEE-----ecEEEECCCcc-HHHHHh
Confidence 33456778999999999999987643 35677776556666664 69999999975 566654
No 78
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.82 E-value=8.5e-08 Score=102.88 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=47.9
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+++.|++|+++++|++|+++.+++..+|+||++.. +|+...+.+. +++.||+++|+|..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-~~~~~~I~l~--~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-NGKEETIDLT--EDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-CCceeEEEec--CCCEEEEeCCcCcc
Confidence 556678899999999999999986322234999999974 4544444433 89999999999863
No 79
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.80 E-value=2.4e-08 Score=105.76 Aligned_cols=37 Identities=38% Similarity=0.690 Sum_probs=34.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
.+|||||||+|+||++||++|++ |.+|+||||+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 46999999999999999999999 99999999998553
No 80
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.79 E-value=7.2e-08 Score=104.18 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=44.9
Q ss_pred hhhhcCCCC-cEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCC
Q 007210 251 LLASANPQK-ITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 326 (612)
Q Consensus 251 ~l~~a~~~g-~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG 326 (612)
|...+++.| ++|+++++|+.|..++++ +++ |.+.+ ..|+..++ .++.||+|||+ .+.+|+..+|+.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~dg---~~~-v~~~~~~~G~~~~i-----~A~~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDDG---SWT-VTVKDLKTGEKRTV-----RAKFVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCCC---CEE-EEEEEcCCCceEEE-----EcCEEEECCCc-chHHHHHHcCCC
Confidence 445555555 899999999999876543 332 44432 23543344 36899999998 578888888874
No 81
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.79 E-value=1.3e-08 Score=108.70 Aligned_cols=36 Identities=42% Similarity=0.655 Sum_probs=33.4
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
..|||||||+|++|+++|+.|++ |.+|+||||+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 46999999999999999999999 9999999999754
No 82
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.78 E-value=8.6e-08 Score=101.68 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=39.2
Q ss_pred CCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCcc
Q 007210 77 HHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVNV 120 (612)
Q Consensus 77 ~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~~ 120 (612)
|+++|||||||+|.+|+++|..|+. |+|||+||+....++....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 3568999999999999999999999 9999999999888765543
No 83
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.76 E-value=3.4e-08 Score=106.71 Aligned_cols=35 Identities=34% Similarity=0.435 Sum_probs=32.3
Q ss_pred CCcccEEEECCCCchHHHHHhhhc---cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ---NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~ 112 (612)
+.++||||||+|..|+++|++|++ |.+|+|||++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 567999999999999999999998 68999999985
No 84
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.75 E-value=2.3e-08 Score=99.68 Aligned_cols=69 Identities=17% Similarity=0.322 Sum_probs=50.0
Q ss_pred hhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe----CCCCeEEEEee---cCCCceEEecCCCcC--ChHHHHHc
Q 007210 253 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD----ENGNQHQAFLA---GNPKSEVILSCGAIG--TPQMLKLS 323 (612)
Q Consensus 253 ~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~----~~g~~~~v~~~---~~a~k~VILaaG~~~--sp~lLl~S 323 (612)
..|+..|++|+.+..+.+++++.+| .|.||...| ++|....-+.+ + -+|.-|+|-|.-+ |-+++.+=
T Consensus 191 ~kAEe~GvEiyPg~aaSevly~edg---sVkGiaT~D~GI~k~G~pKd~FerGme~-hak~TifAEGc~G~Lskqi~kkf 266 (621)
T KOG2415|consen 191 EKAEELGVEIYPGFAASEVLYDEDG---SVKGIATNDVGISKDGAPKDTFERGMEF-HAKVTIFAEGCHGSLSKQIIKKF 266 (621)
T ss_pred HHHHhhCceeccccchhheeEcCCC---cEeeEeeccccccCCCCcccccccccee-cceeEEEeccccchhHHHHHHHh
Confidence 4578899999999999999999887 899998875 34432111100 1 2588899999777 77888766
Q ss_pred CC
Q 007210 324 GV 325 (612)
Q Consensus 324 GI 325 (612)
++
T Consensus 267 ~L 268 (621)
T KOG2415|consen 267 DL 268 (621)
T ss_pred Cc
Confidence 44
No 85
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.75 E-value=3.5e-08 Score=106.87 Aligned_cols=34 Identities=41% Similarity=0.666 Sum_probs=32.1
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+|||||||+|.||+.||..||+ |.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 46999999999999999999999 99999999874
No 86
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.74 E-value=1e-07 Score=100.50 Aligned_cols=33 Identities=45% Similarity=0.651 Sum_probs=31.1
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
|||||||+|..|+++|+.|++ |.+|+||||+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999753
No 87
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.73 E-value=9e-08 Score=100.84 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=32.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+|||||||+|..|+++|+.|++ |.+|+||||+.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 35999999999999999999999 99999999986
No 88
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=9.6e-08 Score=105.48 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=46.9
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+.+.|++|+.++.+++|+.+++| +|+||.+.+ .+|+.+.+ .+|.||||||||+.
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG---AVVGVIAICIETGETVYI-----KSKATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC---eEEEEEEEEcCCCcEEEE-----ecCeEEECCCCccc
Confidence 445566789999999999999987544 999999865 46766555 46899999999985
No 89
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.72 E-value=8e-08 Score=102.50 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=31.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+||||||+|..|+++|++|++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 599999999999999999999 999999999863
No 90
>PRK10015 oxidoreductase; Provisional
Probab=98.71 E-value=5.2e-08 Score=104.00 Aligned_cols=36 Identities=42% Similarity=0.699 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
.+|||||||+|++|+++|+.|++ |.+|+||||++.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 46999999999999999999999 9999999999754
No 91
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.70 E-value=3.8e-07 Score=97.95 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=44.3
Q ss_pred hhhhcC-CCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCC
Q 007210 251 LLASAN-PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 326 (612)
Q Consensus 251 ~l~~a~-~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG 326 (612)
|...+. ..|++|+++++|+.|..++++ ..+ |.+.+ ..++..++ .++.||+|||+ .+.+|+..+|+.
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~---~w~-v~v~~t~~g~~~~i-----~Ad~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLSDG---GWE-VTVKDRNTGEKREQ-----VADYVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECCCC---CEE-EEEEecCCCceEEE-----EcCEEEECCCc-chHHHHHHcCCC
Confidence 445553 469999999999999876332 332 33321 23432234 36899999998 678889889875
No 92
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.66 E-value=1.8e-07 Score=102.18 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=48.3
Q ss_pred CCCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHH
Q 007210 240 DRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 319 (612)
Q Consensus 240 ~~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~l 319 (612)
+.+|.......+...+++.|++|+++++|++|..+++ ++.||.+. +|++ + .++.||+|+|...+-..
T Consensus 224 ~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~----~~~gv~~~--~g~~--~-----~ad~vV~a~~~~~~~~~ 290 (493)
T TIGR02730 224 PKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG----KAVGVKLA--DGEK--I-----YAKRIVSNATRWDTFGK 290 (493)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC----cEEEEEeC--CCCE--E-----EcCEEEECCChHHHHHH
Confidence 3444433223355566788999999999999998764 88999875 5653 2 25889999998666544
Q ss_pred HH
Q 007210 320 LK 321 (612)
Q Consensus 320 Ll 321 (612)
|+
T Consensus 291 Ll 292 (493)
T TIGR02730 291 LL 292 (493)
T ss_pred hC
Confidence 44
No 93
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.62 E-value=4.4e-07 Score=96.43 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=51.0
Q ss_pred hhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCC-CCeEEEEeecCCCceEEecCCCcCChHHHHHcCCCC
Q 007210 253 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGP 327 (612)
Q Consensus 253 ~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~-g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG~ 327 (612)
..|...|.++++.++|+.++.++ .++||++.|.. |+.+.++ ++.||-|||. .+-+++...+..+
T Consensus 172 ~~A~~~Ga~il~~~~v~~~~re~-----~v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~~~~ 236 (532)
T COG0578 172 RDAAEHGAEILTYTRVESLRREG-----GVWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAGLEQ 236 (532)
T ss_pred HHHHhcccchhhcceeeeeeecC-----CEEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhcccC
Confidence 44667899999999999999875 38999999865 6777775 6999999997 5677777775543
No 94
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.62 E-value=4.7e-07 Score=96.81 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
||||||+|..|+++|.+|++ |.+|+||||+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 79999999999999999999 99999999985
No 95
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.60 E-value=2.6e-07 Score=97.74 Aligned_cols=31 Identities=42% Similarity=0.652 Sum_probs=28.8
Q ss_pred EEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 84 IVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 84 IVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
||||+|++|+++|++|++ |.+|+||||++..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 699999999999999999 9999999998743
No 96
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.59 E-value=2.3e-07 Score=98.27 Aligned_cols=34 Identities=26% Similarity=0.616 Sum_probs=31.2
Q ss_pred cccEEEECCCCchHHHHHhhhc---cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~ 113 (612)
.|||||||+|.+|+++|++|++ |.+|+||||+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3899999999999999999997 789999999863
No 97
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.56 E-value=1.7e-07 Score=98.30 Aligned_cols=32 Identities=31% Similarity=0.601 Sum_probs=30.8
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|||||||+|.+|+++|++|++ |.+|+||||+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999 99999999985
No 98
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.55 E-value=2.4e-07 Score=91.88 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=42.0
Q ss_pred cCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 255 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 255 a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+..+|+++..++ |.+|+.|++ .|.||.++++.|++.+.+ +.--|+|-|-|.+
T Consensus 158 ~slpNV~~eeGt-V~sLlee~g----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 158 ASLPNVRLEEGT-VKSLLEEEG----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSN 209 (509)
T ss_pred hcCCCeEEeeee-HHHHHhccC----eEEeEEEecCCCceEEEe-----cceEEEecchhHH
Confidence 356899987665 888887765 999999998888876654 5899999999865
No 99
>PRK06185 hypothetical protein; Provisional
Probab=98.55 E-value=2.1e-07 Score=99.10 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+|||||||+|++|+++|+.|++ |.+|+|||+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 467999999999999999999999 99999999986
No 100
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.54 E-value=1.6e-07 Score=101.74 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=34.8
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
..|||||||||.+|+++|..||+ |++|+||||....++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 45899999999999999999999 999999999876655
No 101
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.51 E-value=1e-07 Score=98.40 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=48.5
Q ss_pred cCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcC-ChHHHH
Q 007210 255 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG-TPQMLK 321 (612)
Q Consensus 255 a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~-sp~lLl 321 (612)
|.+.|..+.-..+|.+|+.|+++ ++.|++++|. .|+++.|+ +|.||=|||-|. +-+.|-
T Consensus 234 A~r~GA~v~Nh~ev~~Llkd~~~---kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfsDsIr~Md 294 (680)
T KOG0042|consen 234 AARNGATVLNHVEVVSLLKDKDG---KVIGARARDHITGKEYEIR-----AKVVVNATGPFSDSIRKMD 294 (680)
T ss_pred HHhcchhhhhHHHHHHHhhCCCC---ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCccHHHHhhc
Confidence 45679999999999999999876 9999999874 58888886 599999999987 444443
No 102
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.50 E-value=2.1e-07 Score=95.64 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=38.0
Q ss_pred CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 256 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 256 ~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
..+|++|+ +.+|+.|+.+++ +|.||... +|.. ++ ++.||||||.|.+..+.
T Consensus 107 ~~~nl~i~-~~~V~~l~~e~~----~v~GV~~~--~g~~--~~-----a~~vVlaTGtfl~G~~~ 157 (392)
T PF01134_consen 107 SHPNLTII-QGEVTDLIVENG----KVKGVVTK--DGEE--IE-----ADAVVLATGTFLNGCIH 157 (392)
T ss_dssp TSTTEEEE-ES-EEEEEECTT----EEEEEEET--TSEE--EE-----ECEEEE-TTTGBTSEEE
T ss_pred cCCCeEEE-EcccceEEecCC----eEEEEEeC--CCCE--Ee-----cCEEEEecccccCceee
Confidence 45899996 689999999876 99999885 6754 32 58999999996655544
No 103
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.50 E-value=2.2e-06 Score=88.29 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=49.3
Q ss_pred hhhhc-CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCC
Q 007210 251 LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 326 (612)
Q Consensus 251 ~l~~a-~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG 326 (612)
++..+ ++.|++|.++++|+.|...+++ -.-|.+.+ ..|+...++ +|-|++.||| ++=.||++|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg----~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG----RWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC----CEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcCCh
Confidence 55555 4459999999999999988664 23344543 245556664 6999999998 688999999884
No 104
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.48 E-value=1.1e-06 Score=93.87 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=34.6
Q ss_pred CCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 77 HHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 77 ~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
+..+|||||||+|++|+++|..|++ |.+|+||||.+..
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 3567999999999999999999999 9999999999743
No 105
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.48 E-value=6.9e-07 Score=95.85 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=33.0
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...+|+|||+|++|+++|.+|.+ |.+|+|+||+...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v 45 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV 45 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 45799999999999999999999 9999999999744
No 106
>PRK07208 hypothetical protein; Provisional
Probab=98.48 E-value=1.4e-06 Score=94.85 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=35.6
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
++..||||||||.+|+++|++|++ |.+|+|||+.+..++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 567899999999999999999999 999999999877655
No 107
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.45 E-value=1.1e-06 Score=96.97 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=46.1
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-CCCCeEEEEeecCCCceEEecCCCcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 316 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-~~g~~~~v~~~~~a~k~VILaaG~~~s 316 (612)
+...+.+.|++|++++.|++|+.+++ +|+||.+.+ .+|+...+ .+|.||||||||+.
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~~g----~v~Ga~~~~~~~g~~~~i-----~AkaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLMEDG----ECRGVIAYCLETGEIHRF-----RAKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEeeCC----EEEEEEEEEcCCCcEEEE-----EeCeEEECCCCccc
Confidence 44556678999999999999998753 999999865 35665555 36999999999985
No 108
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.45 E-value=3.9e-07 Score=86.98 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=33.5
Q ss_pred hcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHc
Q 007210 254 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 323 (612)
Q Consensus 254 ~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~S 323 (612)
.+++.+++++++++|+++..+++ + .-|.+ .+++ ++. ++.||||+|.+..|+++..-
T Consensus 91 ~~~~~~l~i~~~~~V~~v~~~~~----~-w~v~~--~~~~--~~~-----a~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 91 YAERFGLEIRFNTRVESVRRDGD----G-WTVTT--RDGR--TIR-----ADRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHTTGGEETS--EEEEEEETT----T-EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-T
T ss_pred HHhhcCcccccCCEEEEEEEecc----E-EEEEE--Eecc--eee-----eeeEEEeeeccCCCCccccc
Confidence 35667888999999999999865 3 33444 3552 332 49999999999999987644
No 109
>PLN02985 squalene monooxygenase
Probab=98.43 E-value=2.7e-06 Score=92.70 Aligned_cols=35 Identities=37% Similarity=0.523 Sum_probs=32.8
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+..|||||||+|++|+++|..|++ |.+|+||||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 567999999999999999999999 99999999975
No 110
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.40 E-value=1.2e-06 Score=99.02 Aligned_cols=33 Identities=39% Similarity=0.616 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
++||||||+|.+|+++|+.|++ |.+|+||||+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5899999999999999999999 99999999985
No 111
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.36 E-value=2.8e-06 Score=90.00 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
...+||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 457999999999999999999999 999999999863
No 112
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.35 E-value=3e-06 Score=80.59 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+++|||+|++|+++|..|.+ |.+|.|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 69999999999999999999 99999999996
No 113
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.33 E-value=3.1e-06 Score=89.55 Aligned_cols=31 Identities=42% Similarity=0.793 Sum_probs=30.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
|||||||+|++|+++|+.|++ |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 799999999999999999999 9999999997
No 114
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.32 E-value=2.3e-06 Score=92.72 Aligned_cols=32 Identities=44% Similarity=0.693 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|||||||+|.+|+.+|..+++ |.+|+|||+.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999 99999999975
No 115
>PRK08244 hypothetical protein; Provisional
Probab=98.28 E-value=4.8e-06 Score=90.98 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=32.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+|||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4899999999999999999999 999999999874
No 116
>PRK06126 hypothetical protein; Provisional
Probab=98.28 E-value=1e-05 Score=89.71 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+.++||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457999999999999999999999 999999999763
No 117
>PLN02697 lycopene epsilon cyclase
Probab=98.27 E-value=5.4e-06 Score=89.94 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=32.1
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+..|||||||+|++|+++|.+|++ |++|+|||+..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 456999999999999999999999 99999999863
No 118
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.27 E-value=1.4e-06 Score=95.60 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=47.2
Q ss_pred CCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 241 RFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 241 ~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
..|.......+...+++.|++|+++++|++|..+++ ++++|+.. +|+. + .++.||+|++...+-..|
T Consensus 215 ~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~~~~l 281 (502)
T TIGR02734 215 RGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG----RATAVHLA--DGER--L-----DADAVVSNADLHHTYRRL 281 (502)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHHHHHh
Confidence 344332233355556678999999999999998764 88898875 5643 2 258899998876666555
Q ss_pred H
Q 007210 321 K 321 (612)
Q Consensus 321 l 321 (612)
+
T Consensus 282 ~ 282 (502)
T TIGR02734 282 L 282 (502)
T ss_pred c
Confidence 4
No 119
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.27 E-value=9.4e-06 Score=86.78 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=33.9
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCe-eeEeecCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFT-VLLLERGGVPF 115 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~-VlvLEkG~~~~ 115 (612)
...+||+|||+|.+|+++|.+|.+ |.. ++||||.....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G 45 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC
Confidence 467999999999999999999999 876 99999997443
No 120
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.27 E-value=9.6e-06 Score=85.76 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=33.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...+||||||+|..|+++|+.|++ |.+|+|+|+....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 457899999999999999999999 9999999998743
No 121
>PRK06847 hypothetical protein; Provisional
Probab=98.27 E-value=7.2e-06 Score=86.33 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=32.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+..||||||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 45799999999999999999999 999999999763
No 122
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.25 E-value=5.5e-06 Score=88.18 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=31.1
Q ss_pred ccEEEECCCCchHHHHHhhhc-c--CeeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-N--FTVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~~ 113 (612)
|||||||+|++|+++|+.|++ | .+|+||||.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 899999999999999999999 6 89999999863
No 123
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=2.3e-06 Score=89.19 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=31.6
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+|||||||+|-||+-||..+|+ |.+++||--..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 45999999999999999999999 99999998765
No 124
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.24 E-value=1e-05 Score=85.54 Aligned_cols=37 Identities=46% Similarity=0.732 Sum_probs=33.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...+||||||+|++|+++|+.|++ |.+|+||||.+..
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 346899999999999999999999 9999999998743
No 125
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.23 E-value=1.6e-05 Score=81.31 Aligned_cols=234 Identities=16% Similarity=0.146 Sum_probs=116.9
Q ss_pred CCCCcccEEEECCCCchHHHHHhhhc------cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCCcee
Q 007210 76 HHHSAFDYIVVGGGTAGCPLAATLSQ------NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTDGVL 149 (612)
Q Consensus 76 ~~~~~~DvIVVGsG~aG~~aA~~Lae------g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (612)
.+...||+||||+|++|+.+|++++. ..+|++||+|....... .+... -.+.....-. .
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~----~~~~~----------~~~~~c~~~~-~ 78 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRL----CPKDE----------KKLEKCPKCD-P 78 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhh----ccccc----------cchhhcCCCC-C
Confidence 34568999999999999999999995 36999999997542211 00000 0000000000 1
Q ss_pred ecccceecccccccceeee-cCCh-hhhc--CCCCC--hhhhcccchhhhhccccC--CCCchhHHHHH-HHHHHcCCCC
Q 007210 150 NARARVLGGGSSINAGFYT-RASS-QFIE--RMGWD--AKLVNESFPWVERQIVHQ--PKQEGWQKALR-DSLLDVGVSP 220 (612)
Q Consensus 150 ~~~g~~lGG~s~~~~~~~~-r~~~-~~~~--~~gw~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~g~~~ 220 (612)
.+--.++||+..+..+.+. +|.. .++. ..+|. |+ +..+-+...-.++-. ....+....+. ..+.++|...
T Consensus 79 ~~I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~~~~~-~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~ 157 (486)
T COG2509 79 CPIVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTDEFWE-LVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGE 157 (486)
T ss_pred ceeEecccccccccccceecccccccchhhhhCChHHHHH-HHhccchhheecCCCcCcccCCchhhhhHHHHHHhCCCc
Confidence 1122478999999888776 2221 1111 11221 11 111111111001100 00111112222 1222333211
Q ss_pred CCCCcccCCCceecceeEECCCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEee
Q 007210 221 FNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLA 300 (612)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~ 300 (612)
. .-...-...| .+..+.....+...++..|++++++|+|+.|++.++ .+.+|... +|.+.
T Consensus 158 e----il~~~~rHiG-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~----~~~~v~~~--~g~~i----- 217 (486)
T COG2509 158 E----ILPIYQRHIG-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN----EVLGVKLT--KGEEI----- 217 (486)
T ss_pred e----eeeccccccC-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC----ceEEEEcc--CCcEE-----
Confidence 0 0000000001 011111122344556778999999999999999876 67888775 56543
Q ss_pred cCCCceEEecCCCcCChHHHHHc---CCCChhhhhhCCceeeecCcccccccccC
Q 007210 301 GNPKSEVILSCGAIGTPQMLKLS---GVGPKAELEKLNISVVLDNAHIGKGMADN 352 (612)
Q Consensus 301 ~~a~k~VILaaG~~~sp~lLl~S---GIG~~~~L~~~GI~~~~~~p~VG~nl~dh 352 (612)
.++.||||-|--+.-.+-++. |+. -.-.+..|.|.++.| +.++|+
T Consensus 218 --~~~~vvlA~Grsg~dw~~~l~~K~Gv~--~~~~p~dIGVRvE~p---~~vmd~ 265 (486)
T COG2509 218 --EADYVVLAPGRSGRDWFEMLHKKLGVK--MRAKPFDIGVRVEHP---QSVMDP 265 (486)
T ss_pred --ecCEEEEccCcchHHHHHHHHHhcCcc--cccCCeeEEEEEecc---hHhhCc
Confidence 359999999965543333322 433 222356666676666 345655
No 126
>PRK07045 putative monooxygenase; Reviewed
Probab=98.20 E-value=1.3e-05 Score=84.89 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=33.9
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
+..+||+|||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 356999999999999999999999 9999999999743
No 127
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.19 E-value=8.2e-06 Score=80.04 Aligned_cols=39 Identities=33% Similarity=0.427 Sum_probs=35.1
Q ss_pred CCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 77 HHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 77 ~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
+.+..|+||||+|.=|+.+|++|++ |.++|+||+-+.+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 3567999999999999999999999 99999999987543
No 128
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.19 E-value=1.1e-05 Score=85.10 Aligned_cols=33 Identities=33% Similarity=0.625 Sum_probs=31.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999754
No 129
>PRK06184 hypothetical protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=87.80 Aligned_cols=35 Identities=31% Similarity=0.578 Sum_probs=32.6
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
++||+|||+|++|+++|+.|++ |.+|+||||.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5899999999999999999999 9999999998643
No 130
>PRK07190 hypothetical protein; Provisional
Probab=98.18 E-value=4.8e-06 Score=90.33 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=33.0
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
..+||||||+|++|+++|+.|++ |.+|+||||.+..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 45899999999999999999999 9999999998743
No 131
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.17 E-value=1.4e-05 Score=88.22 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=33.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...+||||||+|++|+++|+.|++ |.+|+||||.+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 356999999999999999999999 9999999998743
No 132
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.16 E-value=1.8e-05 Score=82.60 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=45.5
Q ss_pred hhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHc
Q 007210 253 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 323 (612)
Q Consensus 253 ~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~S 323 (612)
..+++.|++++.+++|+++..+++ ++++|... +++...+ .++.||||||++-|..|+...
T Consensus 271 ~~~~~~Gg~il~g~~V~~i~~~~~----~v~~V~t~--~g~~~~l-----~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 271 HRFEQLGGVMLPGDRVLRAEFEGN----RVTRIHTR--NHRDIPL-----RADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHCCCEEEECcEEEEEEeeCC----eEEEEEec--CCccceE-----ECCEEEEccCCCcCHHHHhhc
Confidence 344668999999999999998875 88888764 3322334 358899999999888886654
No 133
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.14 E-value=6.8e-06 Score=83.46 Aligned_cols=72 Identities=25% Similarity=0.298 Sum_probs=53.1
Q ss_pred CCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 241 RFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 241 ~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
.+|....+..+.+-+++.|.+|++++.|++|+.|++ +|+||... +|++.+ +|.||--|+-+.|=.-|
T Consensus 260 ~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~g----ka~GV~L~--dG~ev~-------sk~VvSNAt~~~Tf~kL 326 (561)
T KOG4254|consen 260 RGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSG----KAVGVRLA--DGTEVR-------SKIVVSNATPWDTFEKL 326 (561)
T ss_pred CCChhHHHHHHHHHHHhccceeeehhhhhheeccCC----eEEEEEec--CCcEEE-------eeeeecCCchHHHHHHh
Confidence 344333333455667889999999999999999984 99999997 686532 48888888888887666
Q ss_pred HHcCC
Q 007210 321 KLSGV 325 (612)
Q Consensus 321 l~SGI 325 (612)
+--+.
T Consensus 327 lp~e~ 331 (561)
T KOG4254|consen 327 LPGEA 331 (561)
T ss_pred CCCcc
Confidence 54433
No 134
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.13 E-value=1.1e-05 Score=85.37 Aligned_cols=32 Identities=38% Similarity=0.597 Sum_probs=30.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
||||||+|++|+.+|.+|++ |.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999 999999999863
No 135
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.12 E-value=2.3e-05 Score=82.97 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=32.0
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
.+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 4799999999999999999999 999999999873
No 136
>PRK08013 oxidoreductase; Provisional
Probab=98.12 E-value=2.9e-05 Score=82.46 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=32.3
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+|||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5899999999999999999999 999999999874
No 137
>PRK06834 hypothetical protein; Provisional
Probab=98.11 E-value=2.2e-05 Score=85.34 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=32.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
++||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5899999999999999999999 999999999863
No 138
>PRK11445 putative oxidoreductase; Provisional
Probab=98.06 E-value=1.5e-05 Score=83.05 Aligned_cols=33 Identities=27% Similarity=0.533 Sum_probs=30.9
Q ss_pred ccEEEECCCCchHHHHHhhhccCeeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQNFTVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Laeg~~VlvLEkG~~ 113 (612)
|||+|||+|++|+++|..|++..+|+||||.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 799999999999999999998889999999864
No 139
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.01 E-value=6.9e-06 Score=89.46 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=28.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
-|+|||||++|+++|..|.| |.+|+++||.+..+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG 37 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG 37 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC
Confidence 48999999999999999999 99999999998554
No 140
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.00 E-value=2.6e-05 Score=82.48 Aligned_cols=32 Identities=44% Similarity=0.687 Sum_probs=30.9
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.+||||||+|++|+++|..|++ |.+|+||||-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 4799999999999999999999 9999999998
No 141
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.99 E-value=6.9e-05 Score=83.02 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=33.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
..++||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 467999999999999999999999 999999999863
No 142
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.99 E-value=0.00014 Score=85.82 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=49.2
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 326 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG 326 (612)
+...+++.|++|++++.|+++.-+ + ++.+|++...+|...++ .++.|+++.|-.-+..|+...|..
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~-~----~v~~V~l~~~~g~~~~i-----~~D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGG-K----RVSGVAVARNGGAGQRL-----EADALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecC-C----cEEEEEEEecCCceEEE-----ECCEEEEcCCcCchhHHHHhcCCC
Confidence 444556789999999999998643 2 78888887434544555 469999999988888888877643
No 143
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.97 E-value=4.9e-06 Score=63.81 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=28.4
Q ss_pred EECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 85 VVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 85 VVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
|||+|++|+++|.+|++ |.+|+|+||.....+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 89999999999999999 999999999986543
No 144
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.97 E-value=4.6e-05 Score=80.90 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
...||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 45799999999999999999999 999999999863
No 145
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.96 E-value=5.6e-05 Score=82.98 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=30.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeec
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLER 110 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEk 110 (612)
...|||+|||+|+||+.+|.+|++ |++|+|+|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999975
No 146
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=7.7e-06 Score=79.80 Aligned_cols=37 Identities=32% Similarity=0.566 Sum_probs=34.5
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSD 117 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~ 117 (612)
||+||||||.+|+++|..|++ |.+||||||-+..+++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 899999999999999999999 9999999998877665
No 147
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=2.4e-05 Score=82.66 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=32.0
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
.-+|+|||||+|||++|..|.+ |..|+|+||....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence 4589999999999999999999 9999999999743
No 148
>PRK07588 hypothetical protein; Provisional
Probab=97.94 E-value=6.9e-05 Score=79.38 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=30.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 89999999999999999999 999999999863
No 149
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.91 E-value=6.4e-06 Score=88.69 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=31.8
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
++|||||||+|+||+.||.+|++ |+||+|+||+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 36999999999999999999999 99999999964
No 150
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.91 E-value=6.3e-05 Score=82.46 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=30.5
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeec
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLER 110 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEk 110 (612)
...|||||||+|+||+.||.+|++ |++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 456999999999999999999999 999999974
No 151
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.91 E-value=9.2e-06 Score=74.21 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=30.1
Q ss_pred cccEEEECCCCchHHHHHhhhc---cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ---NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~ 112 (612)
+.||||||+|.+|+.+|+..+. +.+|.+||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 5699999999999999999996 68999999864
No 152
>PRK07236 hypothetical protein; Provisional
Probab=97.90 E-value=0.00011 Score=77.55 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
....||||||+|++|+++|..|++ |.+|+|+||.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 345899999999999999999999 99999999986
No 153
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.87 E-value=7.7e-05 Score=78.35 Aligned_cols=32 Identities=41% Similarity=0.662 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHHhh--hc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATL--SQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~L--ae-g~~VlvLEkG~~ 113 (612)
||||||+|+||+.+|.+| +. |.+|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 899999999999999999 66 899999999864
No 154
>PRK06370 mercuric reductase; Validated
Probab=97.86 E-value=1e-05 Score=87.59 Aligned_cols=35 Identities=46% Similarity=0.697 Sum_probs=32.8
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+|||||||+|+||+.+|.+|++ |++|+|+||+.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 567999999999999999999999 99999999974
No 155
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.86 E-value=1e-05 Score=85.80 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=33.1
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+||+||||+|+||.++|.+|++ |.||+|+|+.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 468999999999999999999999 98899999996
No 156
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.86 E-value=9.4e-06 Score=87.01 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=32.8
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+|||||||+|+||+++|..|++ |.+|+||||..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 567999999999999999999999 99999999974
No 157
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.86 E-value=0.00011 Score=71.58 Aligned_cols=36 Identities=36% Similarity=0.586 Sum_probs=32.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc---cCeeeEeecCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGV 113 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~ 113 (612)
...||.||||+|..|++.|.+|.- +.+|+||||-..
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 578999999999999999999986 789999999863
No 158
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.85 E-value=9.9e-06 Score=87.25 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=30.9
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
+||+||||+|+||+.||.+|++ |++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 5999999999999999999999 9999999995
No 159
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=7.1e-05 Score=76.62 Aligned_cols=35 Identities=40% Similarity=0.689 Sum_probs=31.8
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+..|||||||+|-|||-||..+|+ |.+.+||-..-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 678999999999999999999999 99999987653
No 160
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=1.2e-05 Score=87.34 Aligned_cols=35 Identities=29% Similarity=0.611 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
...||+||||+|+||+.+|.+|++ |++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 467999999999999999999999 99999999963
No 161
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.84 E-value=1.2e-05 Score=87.01 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=30.5
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
+||+||||+|+||+.||.+|++ |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5999999999999999999999 9999999974
No 162
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.83 E-value=1.3e-05 Score=86.83 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
+..||+||||+|+||+.+|.+|++ |++|+|+|+.+..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~ 39 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 456999999999999999999999 9999999987533
No 163
>PRK06116 glutathione reductase; Validated
Probab=97.81 E-value=1.3e-05 Score=86.47 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=31.9
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
+.+|||||||+|+||+.+|.+|++ |++|+|+|++
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 346999999999999999999999 9999999996
No 164
>PTZ00058 glutathione reductase; Provisional
Probab=97.81 E-value=1.8e-05 Score=86.92 Aligned_cols=35 Identities=31% Similarity=0.555 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+||+||||+|+||..+|.+|++ |++|+|+||+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 357999999999999999999999 99999999963
No 165
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.81 E-value=1.5e-05 Score=86.43 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
+..|||||||+|++|+.+|.+|++ |++|+|+||++..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 356999999999999999999999 9999999997544
No 166
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.80 E-value=1.4e-05 Score=83.15 Aligned_cols=35 Identities=34% Similarity=0.598 Sum_probs=30.9
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
+|||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 5899999999999999999999 9999999998754
No 167
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.79 E-value=1.5e-05 Score=80.74 Aligned_cols=34 Identities=44% Similarity=0.765 Sum_probs=31.9
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
|||||||+|++|+++|++|++ |.+|+||||....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 799999999999999999999 9999999998743
No 168
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=1.7e-05 Score=85.92 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=31.9
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+||+||||+|+||+.||.+|++ |++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 46999999999999999999999 99999999974
No 169
>PLN02546 glutathione reductase
Probab=97.73 E-value=2e-05 Score=86.58 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=31.1
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeec
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLER 110 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEk 110 (612)
..+|||||||+|+||..+|.+|++ |+||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 357999999999999999999999 999999996
No 170
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.72 E-value=2.3e-05 Score=84.43 Aligned_cols=34 Identities=32% Similarity=0.603 Sum_probs=32.0
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+|||||||+|+||+.+|.+|++ |++|+|+|+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 5999999999999999999999 999999999753
No 171
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.72 E-value=2.2e-05 Score=85.12 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=32.3
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+||+||||+|+||+.+|.+|++ |++|+|+||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 56999999999999999999999 99999999975
No 172
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.71 E-value=2.3e-05 Score=83.07 Aligned_cols=35 Identities=40% Similarity=0.666 Sum_probs=32.8
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+|||||||+|++|+++|..|++ |.+|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 456999999999999999999999 99999999975
No 173
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.69 E-value=2.7e-05 Score=83.80 Aligned_cols=33 Identities=42% Similarity=0.586 Sum_probs=31.7
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+|||||||||+||+.+|.+|++ |++|+|+||++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6999999999999999999999 99999999975
No 174
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.69 E-value=3.5e-05 Score=83.67 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=31.2
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeec
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLER 110 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEk 110 (612)
..+||+||||+|+||+.+|.+|++ |.+|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 347999999999999999999999 999999998
No 175
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.68 E-value=0.00075 Score=70.84 Aligned_cols=60 Identities=20% Similarity=0.395 Sum_probs=48.0
Q ss_pred hhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCc
Q 007210 252 LASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 314 (612)
Q Consensus 252 l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~ 314 (612)
...++..||++..+|+|+.|.++..++..+|+++++. .+|+..+|.+. ..+.|++.-|.+
T Consensus 214 ~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~-~~g~~~~i~l~--~~DlV~vT~GS~ 273 (500)
T PF06100_consen 214 IRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE-QDGKEETIDLG--PDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE-cCCCeeEEEeC--CCCEEEEECCcc
Confidence 3456789999999999999999866555688888888 57877766654 778999998875
No 176
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00027 Score=75.47 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=41.9
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 324 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SG 324 (612)
|...|.+.|+.|+.+|+|++|....+ +..||+.. .|.. .+..||=|||-.. -.+=.++|
T Consensus 193 la~~A~~~GA~viE~cpV~~i~~~~~----~~~gVeT~--~G~i--------et~~~VNaaGvWA-r~Vg~m~g 251 (856)
T KOG2844|consen 193 LARAASALGALVIENCPVTGLHVETD----KFGGVETP--HGSI--------ETECVVNAAGVWA-REVGAMAG 251 (856)
T ss_pred HHHHHHhcCcEEEecCCcceEEeecC----Cccceecc--Ccce--------ecceEEechhHHH-HHhhhhcC
Confidence 44557889999999999999988766 45588875 6743 3578888888654 33333344
No 177
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=3.5e-05 Score=83.48 Aligned_cols=33 Identities=36% Similarity=0.611 Sum_probs=31.1
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.+||+||||+|++|+.+|.+|++ |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45999999999999999999999 9999999994
No 178
>PRK09126 hypothetical protein; Provisional
Probab=97.65 E-value=3e-05 Score=82.15 Aligned_cols=34 Identities=38% Similarity=0.592 Sum_probs=32.5
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+|||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 5999999999999999999999 999999999975
No 179
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.65 E-value=3.4e-05 Score=81.66 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=33.2
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
...|||||||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 456999999999999999999999 999999999864
No 180
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.64 E-value=2.7e-05 Score=82.52 Aligned_cols=32 Identities=44% Similarity=0.650 Sum_probs=30.4
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+||||||+|++|+++|..|++ |.+|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999 99999999964
No 181
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.64 E-value=3.3e-05 Score=86.01 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
+.+|||||||+|+||..+|.+|++ |+||+|+|++
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 347999999999999999999999 9999999975
No 182
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.64 E-value=9.5e-05 Score=80.11 Aligned_cols=31 Identities=32% Similarity=0.610 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|+||||+|++|+.+|.+|++ |.+|+|+||+.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999 99999999864
No 183
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.64 E-value=3.7e-05 Score=79.87 Aligned_cols=36 Identities=44% Similarity=0.631 Sum_probs=32.8
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
+||||||||.+|+++|.+|++ |.+|+|||+....++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 799999999999999999999 999999999765544
No 184
>PLN02463 lycopene beta cyclase
Probab=97.61 E-value=4e-05 Score=81.87 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
...|||||||+|++|+++|..|++ |.+|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 456999999999999999999999 99999999975
No 185
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.7e-05 Score=77.53 Aligned_cols=34 Identities=38% Similarity=0.693 Sum_probs=30.4
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCe-eeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFT-VLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~-VlvLEkG~ 112 (612)
+.|||||||||+||++||..+++ +++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 46999999999999999999999 988 77777764
No 186
>PRK05868 hypothetical protein; Validated
Probab=97.61 E-value=0.00043 Score=72.70 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
||+|||+|++|+++|+.|++ |.+|.|+||.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 89999999999999999999 999999999864
No 187
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.60 E-value=3.8e-05 Score=81.77 Aligned_cols=33 Identities=39% Similarity=0.654 Sum_probs=31.5
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+|||+|||+|++|+++|+.|++ |.+|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4899999999999999999999 99999999986
No 188
>PRK09897 hypothetical protein; Provisional
Probab=97.60 E-value=0.00042 Score=75.38 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=29.7
Q ss_pred ccEEEECCCCchHHHHHhhhc-c--CeeeEeecCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-N--FTVLLLERGGVP 114 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~~~ 114 (612)
.+|+|||+|++|+.+|.+|.+ + .+|.|+|+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 379999999999999999988 3 599999997643
No 189
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.59 E-value=4.9e-05 Score=82.36 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=30.8
Q ss_pred CcccEEEECCCCchHHHHHhhhc--cCeeeEeecC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ--NFTVLLLERG 111 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae--g~~VlvLEkG 111 (612)
.+||+||||+|++|..+|.+|++ |+||+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999 6999999984
No 190
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.59 E-value=4.7e-05 Score=82.58 Aligned_cols=31 Identities=39% Similarity=0.699 Sum_probs=30.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeec
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLER 110 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEk 110 (612)
+|||||||||++|+.+|.+|++ |++|+|+|+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4899999999999999999999 999999999
No 191
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.58 E-value=0.00052 Score=67.59 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=31.7
Q ss_pred CcccEEEECCCCchHHHHHhhhc-----cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-----NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-----g~~VlvLEkG~~~ 114 (612)
..+||+|||+|..|+..|.-|.| |.+|+|+|+....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 46899999999999999998876 5899999998643
No 192
>PRK13748 putative mercuric reductase; Provisional
Probab=97.58 E-value=4.9e-05 Score=84.56 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=31.6
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.+|||||||+|+||+.+|.+|++ |.+|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 46999999999999999999999 9999999997
No 193
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.57 E-value=4.6e-05 Score=80.46 Aligned_cols=33 Identities=33% Similarity=0.593 Sum_probs=31.4
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+|||+|||+|++|+++|+.|++ |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4899999999999999999999 99999999875
No 194
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.56 E-value=5e-05 Score=83.99 Aligned_cols=34 Identities=26% Similarity=0.622 Sum_probs=31.9
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..|||||||||+||+.||.+|++ |++|+|+|++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 45999999999999999999999 99999999975
No 195
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.55 E-value=5.9e-05 Score=81.19 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=35.3
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
.+..+|||||||.+|++||..|.+ |.+|+|||+-.+.++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 467899999999999999999999 999999999876654
No 196
>PLN02507 glutathione reductase
Probab=97.55 E-value=5.3e-05 Score=82.56 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=31.1
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeec
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLER 110 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEk 110 (612)
..+||+||||+|++|..+|.+|++ |+||+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 347999999999999999999999 999999997
No 197
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.55 E-value=4.9e-05 Score=80.94 Aligned_cols=33 Identities=30% Similarity=0.631 Sum_probs=31.3
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
..|||+|||+|++|+++|+.|++ |.+|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46899999999999999999999 9999999996
No 198
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.54 E-value=5.2e-05 Score=82.18 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=30.8
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|||||||||+||+.+|.+|++ |++|+|+||+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999 99999999965
No 199
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.51 E-value=6.6e-05 Score=82.11 Aligned_cols=36 Identities=36% Similarity=0.531 Sum_probs=33.1
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
-||||||||.+|+++|..|++ |++|+||||....++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 489999999999999999999 999999999876654
No 200
>PRK14694 putative mercuric reductase; Provisional
Probab=97.51 E-value=6.9e-05 Score=81.28 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=32.9
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
...|||||||+|+||+.+|.+|++ |.+|+|+|++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 568999999999999999999999 99999999974
No 201
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.50 E-value=6.9e-05 Score=81.75 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=30.9
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
..||+||||+|+||+.||.+|++ |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 46999999999999999999999 9999999973
No 202
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.48 E-value=0.00018 Score=77.32 Aligned_cols=33 Identities=45% Similarity=0.781 Sum_probs=26.8
Q ss_pred cEEEECCCCchHHHHHhhhc-c---CeeeEeecCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N---FTVLLLERGGVP 114 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g---~~VlvLEkG~~~ 114 (612)
||||||+|+||..+|..|++ + .+|.|||+....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 79999999999999999999 6 799999998643
No 203
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.45 E-value=0.00054 Score=75.32 Aligned_cols=65 Identities=15% Similarity=0.282 Sum_probs=50.1
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
+...+.+.|++|+++++|++|..+++ +++||++.+. .|+...+. ++.||.|||.+ +.+|+...|+
T Consensus 134 l~~~A~~~Ga~i~~~t~V~~i~~~~~----~v~gv~v~~~~~g~~~~i~-----a~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 134 NVLDAQEHGARIFTYTKVTGLIREGG----RVTGVKVEDHKTGEEERIE-----AQVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEECC----EEEEEEEEEcCCCcEEEEE-----cCEEEECCCcc-hHHHHHhcCC
Confidence 44556778999999999999998765 8999998753 45555553 69999999974 6777766654
No 204
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.45 E-value=8e-05 Score=75.60 Aligned_cols=32 Identities=31% Similarity=0.563 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|||||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999 99999999985
No 205
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.42 E-value=9e-05 Score=78.40 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=31.9
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
.+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999 999999999873
No 206
>PLN02676 polyamine oxidase
Probab=97.42 E-value=0.0002 Score=77.76 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=33.9
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cC-eeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~~~~~ 116 (612)
..+||||||+|.+|+++|.+|++ |. +|+|||+....++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 45799999999999999999999 87 6999999876654
No 207
>PRK14727 putative mercuric reductase; Provisional
Probab=97.41 E-value=0.00011 Score=79.78 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...||+||||+|++|..+|.+|++ |.+|+|+|++...
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 356999999999999999999999 9999999997533
No 208
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.38 E-value=0.00011 Score=77.46 Aligned_cols=33 Identities=39% Similarity=0.650 Sum_probs=31.1
Q ss_pred cEEEECCCCchHHHHHhhhc-c-CeeeEeecCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGVP 114 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~~ 114 (612)
||||||+|++|+++|..|++ | .+|+|+||.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999 9 999999998743
No 209
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.38 E-value=0.0001 Score=77.47 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+||||||+|++|+++|+.|++ |.+|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999 99999999975
No 210
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.38 E-value=0.0015 Score=64.76 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=35.4
Q ss_pred CcccEEEECCCCchHHHHHhhhccCeeeEeecCCCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQNFTVLLLERGGVPFSDV 118 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Laeg~~VlvLEkG~~~~~~~ 118 (612)
..-++.|||||.+|++||+.|+.-++|.|.|++...++..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCcc
Confidence 4468999999999999999999999999999998776644
No 211
>PTZ00367 squalene epoxidase; Provisional
Probab=97.36 E-value=0.00014 Score=80.02 Aligned_cols=34 Identities=47% Similarity=0.627 Sum_probs=32.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+|||||||+|++|+++|..|++ |.+|+||||.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 56999999999999999999999 99999999975
No 212
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.33 E-value=0.00015 Score=78.69 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=30.6
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
+||+||||+|++|..+|.+|++ |++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999999999999999999 9999999985
No 213
>PLN02268 probable polyamine oxidase
Probab=97.33 E-value=0.00015 Score=77.95 Aligned_cols=36 Identities=39% Similarity=0.502 Sum_probs=33.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSD 117 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~ 117 (612)
+|||||+|.+|++||++|.+ |.+|+|||+..+.++.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 79999999999999999999 9999999998877654
No 214
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.32 E-value=0.00014 Score=76.82 Aligned_cols=33 Identities=36% Similarity=0.617 Sum_probs=31.4
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+|||||||+|.+|+++|++|++ |.+|+||||+.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999 99999999985
No 215
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.31 E-value=0.0013 Score=67.72 Aligned_cols=33 Identities=36% Similarity=0.502 Sum_probs=26.2
Q ss_pred cccEEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
.||+|+||.|++++++|+.|.+ + .+++.|||-+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 4899999999999999999999 4 8999999876
No 216
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.30 E-value=0.00016 Score=76.71 Aligned_cols=33 Identities=48% Similarity=0.696 Sum_probs=30.5
Q ss_pred CcccEEEECCCCchHHHHHhhhc----cCeeeEeecC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ----NFTVLLLERG 111 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae----g~~VlvLEkG 111 (612)
..+||||||+|++|+++|+.|++ |.+|+||||-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 45899999999999999999976 8999999995
No 217
>PLN02576 protoporphyrinogen oxidase
Probab=97.28 E-value=0.00024 Score=77.75 Aligned_cols=39 Identities=31% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCcccEEEECCCCchHHHHHhhhc--cCeeeEeecCCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ--NFTVLLLERGGVPFS 116 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae--g~~VlvLEkG~~~~~ 116 (612)
...+||||||||.+|+++|++|++ |.+|+|||+....++
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 456799999999999999999998 799999999876654
No 218
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.28 E-value=0.00016 Score=77.81 Aligned_cols=32 Identities=47% Similarity=0.820 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHHHhhhc-----cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-----NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-----g~~VlvLEkG~ 112 (612)
|||||||+|++|+++|+.|++ |.+|+||||.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999996 89999999954
No 219
>PRK06996 hypothetical protein; Provisional
Probab=97.27 E-value=0.0002 Score=75.98 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=31.6
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-c----CeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-N----FTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g----~~VlvLEkG~ 112 (612)
..+|||+|||+|++|+++|+.|++ | .+|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 356999999999999999999999 7 4799999975
No 220
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.27 E-value=0.00026 Score=70.82 Aligned_cols=34 Identities=29% Similarity=0.591 Sum_probs=32.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+||+||||+|++|-+||+++++ |++...+||-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence 57999999999999999999999 99999999955
No 221
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.26 E-value=0.00019 Score=77.60 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=31.7
Q ss_pred cEEEECCCCchHHHHHhhhc-c--CeeeEeecCCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N--FTVLLLERGGVPFS 116 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~~~~~ 116 (612)
+|||||||.+|++||++|++ | .+|+|||+.+..++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 59999999999999999999 7 89999999876654
No 222
>PRK07233 hypothetical protein; Provisional
Probab=97.25 E-value=0.0002 Score=76.93 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=32.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSD 117 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~ 117 (612)
+|||||+|.+|+++|..|++ |++|+|||+....++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 58999999999999999999 9999999999876653
No 223
>PRK10262 thioredoxin reductase; Provisional
Probab=97.25 E-value=0.00018 Score=73.90 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
++.+||||||+|+||+.||..|++ |++|+|+|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 578999999999999999999999 9999999964
No 224
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00026 Score=73.03 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=35.2
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
.+..||||||+|.+||++|++|.+ |++|+|||.-+...+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 456899999999999999999999 999999999876654
No 225
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.23 E-value=0.00024 Score=76.64 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=27.5
Q ss_pred cccEEEECCCCchHHHHHhhhccCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQNFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Laeg~~VlvLEkG~ 112 (612)
+||+||||+|++|..+|.+++ |+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~~-g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFA-DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHHC-CCeEEEEeCCC
Confidence 599999999999998876543 99999999864
No 226
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.21 E-value=0.00026 Score=74.18 Aligned_cols=33 Identities=39% Similarity=0.686 Sum_probs=30.5
Q ss_pred cEEEECCCCchHHHHHhhhc---cCeeeEeecCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGVP 114 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~~ 114 (612)
||||||+|+||+.+|.+|++ |.+|+|||+++..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 89999999999999999997 8999999998743
No 227
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.19 E-value=0.00038 Score=78.04 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=33.6
Q ss_pred CCCcccEEEECCCCchHHHHHhhhc--cCeeeEeecCCC
Q 007210 77 HHSAFDYIVVGGGTAGCPLAATLSQ--NFTVLLLERGGV 113 (612)
Q Consensus 77 ~~~~~DvIVVGsG~aG~~aA~~Lae--g~~VlvLEkG~~ 113 (612)
+..++||+|||+|++|+++|+.|++ |.+|+||||-+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4568999999999999999999998 799999999864
No 228
>PRK06753 hypothetical protein; Provisional
Probab=97.18 E-value=0.00023 Score=74.81 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=31.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
||||||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 79999999999999999999 9999999999743
No 229
>PRK07846 mycothione reductase; Reviewed
Probab=97.17 E-value=0.00029 Score=75.93 Aligned_cols=32 Identities=22% Similarity=0.558 Sum_probs=28.2
Q ss_pred cccEEEECCCCchHHHHHhhhccCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQNFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Laeg~~VlvLEkG~ 112 (612)
+||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 48999999999999998774 399999999964
No 230
>PLN02568 polyamine oxidase
Probab=97.15 E-value=0.00034 Score=76.70 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=34.0
Q ss_pred CcccEEEECCCCchHHHHHhhhc-c-----CeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-N-----FTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g-----~~VlvLEkG~~~~~ 116 (612)
+..||||||+|.+|+++|.+|++ | .+|+|||+....++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 45799999999999999999998 7 89999999887655
No 231
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.15 E-value=0.00027 Score=67.10 Aligned_cols=31 Identities=35% Similarity=0.683 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
||||||+|+||+.+|.+|++ +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999 99999998875
No 232
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.14 E-value=0.00055 Score=67.67 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=32.7
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+|||.|||+|.+|..+|.|+++ |.||.|+|...
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 458999999999999999999999 99999999874
No 233
>PRK07538 hypothetical protein; Provisional
Probab=97.06 E-value=0.00036 Score=74.51 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=30.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
||||||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 89999999999999999999 999999999863
No 234
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.05 E-value=0.00052 Score=76.17 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=33.3
Q ss_pred CCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 77 HHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 77 ~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+.+.++|+|||+|++|+++|..|++ |.+|.|+||.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3567999999999999999999999 99999999975
No 235
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.02 E-value=0.00041 Score=72.40 Aligned_cols=34 Identities=32% Similarity=0.306 Sum_probs=31.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
-||+|||+|.+|+.+|+.|++ |.+|.|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 389999999999999999999 9999999987643
No 236
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00055 Score=72.03 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=32.2
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
|+|+|+|.||+++|++|++ |++|.|+|+++..++
T Consensus 3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred EEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 8999999999999999999 999999999987765
No 237
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.97 E-value=0.00054 Score=74.33 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=32.2
Q ss_pred ccEEEECCCCchHHHHHhhhc-----cCeeeEeecCCCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-----NFTVLLLERGGVPFS 116 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-----g~~VlvLEkG~~~~~ 116 (612)
.||||||+|.+|+++|++|++ |.+|+|||+.+..++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 589999999999999999997 589999999876554
No 238
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.87 E-value=0.00078 Score=69.50 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=34.3
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
..=+++|||+|.+|+.||..||+ |.+|.|+||.+..++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 34589999999999999999999 999999999987654
No 239
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.86 E-value=0.001 Score=77.12 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.4
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
..+||+|||||+||++||..|++ |++|+|+|+.+..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 45799999999999999999999 99999999986543
No 240
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00084 Score=66.05 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.-+||.||||+|.+|+++|.+++. |+||.+|+-=.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 457999999999999999999999 99999999753
No 241
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.84 E-value=0.0008 Score=72.77 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=31.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
+|||||+|.+|+++|++|++ |.+|+|||+.+..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999 999999999876544
No 242
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.83 E-value=0.00079 Score=73.04 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.1
Q ss_pred cEEEECCCCchHHHHHhhhc-c------CeeeEeecCCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N------FTVLLLERGGVPFS 116 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g------~~VlvLEkG~~~~~ 116 (612)
+|||||+|.+|++||++|++ | .+|+|||+.+..++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 59999999999999999997 4 68999999876655
No 243
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.00098 Score=65.55 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=32.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+|||+|||+|.||+++|++|.+ |+++.++-+|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 6999999999999999999999 999999999963
No 244
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.77 E-value=0.0012 Score=67.37 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=30.1
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-+|||||+|.+|++.|+.|++ |.+|+|+|+-.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 479999999999999999999 99999999954
No 245
>PRK12831 putative oxidoreductase; Provisional
Probab=96.76 E-value=0.0013 Score=71.10 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=32.6
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...||+|||+|++|+.+|.+|++ |++|+|+|+....
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 45799999999999999999999 9999999997643
No 246
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.75 E-value=0.0041 Score=60.13 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=41.0
Q ss_pred hhhc-CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 252 LASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 252 l~~a-~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
+..+ ++.|++++.+. |..+. |... |+.+|......+..+.. ....+|||+|- .|++||..-+|
T Consensus 154 ~sea~k~~~V~lv~Gk-v~ev~-dEk~---r~n~v~~ae~~~ti~~~-----d~~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 154 LSEAEKRGGVKLVFGK-VKEVS-DEKH---RINSVPKAEAEDTIIKA-----DVHKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHhhcCeEEEEee-eEEee-cccc---cccccchhhhcCceEEe-----eeeEEEEecCC-Cchhhcccccc
Confidence 3445 45679999885 66665 3333 88888776333333322 35789999996 68888887644
No 247
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.72 E-value=0.001 Score=72.06 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=30.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
++||||+|+||+.+|.+|++ |++|+|+||+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 69999999999999999999 999999999754
No 248
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.69 E-value=0.012 Score=53.49 Aligned_cols=29 Identities=17% Similarity=0.500 Sum_probs=25.3
Q ss_pred EEECCCCchHHHHHhhhc-c-----CeeeEeecCC
Q 007210 84 IVVGGGTAGCPLAATLSQ-N-----FTVLLLERGG 112 (612)
Q Consensus 84 IVVGsG~aG~~aA~~Lae-g-----~~VlvLEkG~ 112 (612)
+|||+|++|+.++.+|.+ . .+|.|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 499999999999999987 3 4899999955
No 249
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.69 E-value=0.0015 Score=68.84 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=32.7
Q ss_pred CCCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCCc
Q 007210 77 HHSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDVN 119 (612)
Q Consensus 77 ~~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~~ 119 (612)
|+.+|||||+|.|..-+.+|..|+. |+|||.|++.+.+++...
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a 44 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA 44 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence 3678999999999999999999999 999999999998877553
No 250
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.68 E-value=0.0012 Score=70.24 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=30.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
+|+|||+|++|+++|+.|++ |.+|.|+||.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 69999999999999999999 999999999763
No 251
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.65 E-value=0.0012 Score=69.33 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=30.7
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
.||+|||+|.+|+.+|..|++ |.+|.|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 389999999999999999999 999999998764
No 252
>PLN02529 lysine-specific histone demethylase 1
Probab=96.62 E-value=0.0019 Score=72.64 Aligned_cols=38 Identities=34% Similarity=0.443 Sum_probs=34.1
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
...||||||+|++|+.+|..|++ |++|+|||+....++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 46799999999999999999999 999999999775544
No 253
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.59 E-value=0.0019 Score=70.02 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
...||+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 45799999999999999999999 99999999987553
No 254
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.58 E-value=0.016 Score=60.25 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCCCCCCcccCCCceecceeEECCCCceecHHH-hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEE
Q 007210 207 KALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGV 285 (612)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~g~r~~~~~-~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV 285 (612)
..+.+.+.+.|++... + .. +.+++...+..+... ++..+++.|++|+++++|+.| +++ . ..|
T Consensus 57 ~d~~~fF~~~Gi~~~~----e-~~-----grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~----~-~~v 119 (376)
T TIGR03862 57 VALQDWARGLGIETFV----G-SS-----GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG----T-LRF 119 (376)
T ss_pred HHHHHHHHHCCCceEE----C-CC-----CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC----c-EEE
Confidence 4456778888874211 0 01 122222222223333 556678899999999999998 332 2 445
Q ss_pred EEEeCCCCeEEEEeecCCCceEEecCCCcCChHH
Q 007210 286 IFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 319 (612)
Q Consensus 286 ~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~l 319 (612)
... .+. ..+ .++.||||+|+...|++
T Consensus 120 ~~~--~~~-~~~-----~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 120 ETP--DGQ-STI-----EADAVVLALGGASWSQL 145 (376)
T ss_pred EEC--CCc-eEE-----ecCEEEEcCCCcccccc
Confidence 543 222 123 36999999999887755
No 255
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.56 E-value=0.0019 Score=73.09 Aligned_cols=38 Identities=34% Similarity=0.452 Sum_probs=34.1
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
...+|||||+|.+|+.+|+.|++ |.+|+|||+....++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 45799999999999999999999 999999999876544
No 256
>PLN02487 zeta-carotene desaturase
Probab=96.52 E-value=0.0031 Score=69.37 Aligned_cols=64 Identities=13% Similarity=0.234 Sum_probs=44.1
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCC-CCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTS-GKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~-g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
+...+++.|.+|++++.|++|..+.+ ++..+|+||.+. +++....+ .++.||+|++.....+||
T Consensus 301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~-~~~~~~~~-----~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVS-KATEKEIV-----KADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEe-cCCCceEE-----ECCEEEECCCHHHHHHhC
Confidence 34456788999999999999999743 211258999985 23332333 358999999976555444
No 257
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.48 E-value=0.0021 Score=67.80 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=31.1
Q ss_pred EEEECCCCchHHHHHhhhc-c--CeeeEeecCCCCCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-N--FTVLLLERGGVPFS 116 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~~~~~ 116 (612)
++|||+|.+|+++|++|.+ + ..|.|+|++++.++
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 7999999999999999999 7 89999999976654
No 258
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.46 E-value=0.0025 Score=68.71 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=32.8
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
..+||+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 46899999999999999999999 9999999997644
No 259
>PLN02612 phytoene desaturase
Probab=96.44 E-value=0.0028 Score=70.25 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
...||+|||+|.+|+++|++|++ |.+|+|+|+....++
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 45799999999999999999999 999999999765433
No 260
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.43 E-value=0.0033 Score=65.17 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-c-CeeeEeecCCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGVPFS 116 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~~~~ 116 (612)
....-|||||||.||+.||.+|-+ | ..|+|+|+..+.++
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 345689999999999999999998 5 69999999887665
No 261
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.41 E-value=0.0023 Score=69.34 Aligned_cols=64 Identities=17% Similarity=0.380 Sum_probs=43.8
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCC-eEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRP-KAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~-~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
+...+++.|.+|+++++|++|..++++++. +|++|.+.+.++. ..+ .++.||+|+......+||
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-~~~-----~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-KVI-----KADAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-eEE-----ECCEEEECCChHHHHhhC
Confidence 444556689999999999999986421112 4889888532221 223 358999999987676665
No 262
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.39 E-value=0.003 Score=64.21 Aligned_cols=35 Identities=43% Similarity=0.774 Sum_probs=31.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-----cCeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-----NFTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-----g~~VlvLEkG~ 112 (612)
...|||||||+|+.|.++|+.|.. .+||+|||.+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 457999999999999999999987 37999999994
No 263
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.34 E-value=0.0026 Score=74.22 Aligned_cols=37 Identities=27% Similarity=0.155 Sum_probs=33.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
..+|+|||||+||++||..|++ |++|+|+|+.+..++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG 343 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG 343 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc
Confidence 5689999999999999999999 999999999865443
No 264
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.33 E-value=0.0028 Score=67.63 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=29.3
Q ss_pred cEEEECCCCchHHHHHhhhc-c-CeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~ 113 (612)
.|+|||+|++|+++|..|++ | .+|.|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 58999999999999999999 7 59999999764
No 265
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.31 E-value=0.004 Score=71.65 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
....||+|||||+||+++|..|++ |++|+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 346799999999999999999999 999999999654
No 266
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.30 E-value=0.0041 Score=49.35 Aligned_cols=32 Identities=38% Similarity=0.568 Sum_probs=30.2
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
++|||+|..|+-+|..|++ |.+|.|||+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 7999999999999999999 9999999999854
No 267
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.28 E-value=0.0033 Score=71.12 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=33.1
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
...+|+|||||+||+++|..|++ |++|+|+|+.+..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 35699999999999999999999 99999999986543
No 268
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.26 E-value=0.0032 Score=72.81 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
..-+|+|||||+||+.+|..|++ |++|+|+|+.+..++
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCc
Confidence 34589999999999999999999 999999999875433
No 269
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.24 E-value=0.0037 Score=67.65 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.8
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 45799999999999999999999 9999999998754
No 270
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.23 E-value=0.012 Score=60.65 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=40.1
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 319 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~l 319 (612)
++..+.+.|++++.+++|+.|..+++ ++++|... +| .+ .++.||+|+|++ +++|
T Consensus 143 l~~~~~~~g~~~~~~~~v~~i~~~~~----~~~~v~~~--~g---~~-----~a~~vV~a~G~~-~~~l 196 (337)
T TIGR02352 143 LEKALEKLGVEIIEHTEVQHIEIRGE----KVTAIVTP--SG---DV-----QADQVVLAAGAW-AGEL 196 (337)
T ss_pred HHHHHHHcCCEEEccceEEEEEeeCC----EEEEEEcC--CC---EE-----ECCEEEEcCChh-hhhc
Confidence 44566778999999999999997654 78888753 44 23 358999999974 4443
No 271
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.22 E-value=0.0033 Score=74.02 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=32.8
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
..+|+|||||+||+++|..|++ |++|+|+|+.+..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 5699999999999999999999 99999999986543
No 272
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.22 E-value=0.0049 Score=66.39 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=33.0
Q ss_pred CcccEEEECCCCchHHHHHhhhc---cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~~~~ 116 (612)
....|+|||||+||+.+|..|++ |++|.|+|+.+...+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 34679999999999999999985 899999999986543
No 273
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.21 E-value=0.024 Score=61.51 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.0
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-+++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 479999999999999999999 99999999986
No 274
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=96.09 E-value=0.0057 Score=64.30 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.3
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..||.+|||+|.+|+-+|..|+| |.+|.++-|-.
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~ 88 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLF 88 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEeccc
Confidence 45999999999999999999999 99999998864
No 275
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.05 E-value=0.035 Score=60.29 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 79999999999999999999 99999999875
No 276
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.02 E-value=0.047 Score=57.46 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=40.9
Q ss_pred CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCCC
Q 007210 256 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 326 (612)
Q Consensus 256 ~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGIG 326 (612)
++.|++++++++|+++..+++ . ..|.. .+|+. + .++.||+|+|.-.++.++..+|+.
T Consensus 194 ~~~gV~i~~~~~v~~i~~~~~----~-~~v~~--~~g~~--i-----~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEKTDS----G-IRATL--DSGRS--I-----EVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HhCCCEEEECCeEEEEEccCC----E-EEEEE--cCCcE--E-----ECCEEEECcCCCcchHHHHHCCCC
Confidence 456899999999999976543 2 23444 35643 3 358999999987777888888764
No 277
>PLN03000 amine oxidase
Probab=95.97 E-value=0.0059 Score=69.40 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=34.8
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSD 117 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~ 117 (612)
...||||||+|.+|+.+|..|.+ |++|+|||+....++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 35799999999999999999999 9999999998766553
No 278
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.96 E-value=0.031 Score=60.80 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=30.0
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 379999999999999999999 99999999986
No 279
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.88 E-value=0.009 Score=67.47 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.8
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34699999999999999999999 9999999998754
No 280
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.071 Score=55.98 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.4
Q ss_pred ccEEEECCCCchHHHHHhhhc----cCeeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ----NFTVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae----g~~VlvLEkG~~ 113 (612)
++|.|||+|++|..+|..|.+ ..+|-|+|+-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 689999999999999999988 234999998763
No 281
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.86 E-value=0.039 Score=59.97 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 79999999999999999999 99999999986
No 282
>PLN02976 amine oxidase
Probab=95.78 E-value=0.0078 Score=71.05 Aligned_cols=38 Identities=34% Similarity=0.391 Sum_probs=33.9
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
..+||+|||+|++|+.+|.+|++ |.+|+|||+.+..++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 45899999999999999999999 999999999765544
No 283
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.78 E-value=0.047 Score=57.87 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=29.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 69999999999999999999 99999999986
No 284
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.77 E-value=0.0079 Score=62.66 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=32.0
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
..+|+|||+|++|+.+|..|++ |++|.|+|+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3589999999999999999999 9999999998754
No 285
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.75 E-value=0.0066 Score=69.84 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=29.6
Q ss_pred cEEEECCCCchHHHHHhhhc---cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~ 113 (612)
+|+|||+|+||+++|+.|++ |++|+||||.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 69999999999999999998 689999999874
No 286
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.74 E-value=0.095 Score=57.67 Aligned_cols=57 Identities=23% Similarity=0.423 Sum_probs=44.2
Q ss_pred CCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCChHHHHHc
Q 007210 258 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 323 (612)
Q Consensus 258 ~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~S 323 (612)
.|+++++++.++++.-+++ ++++|.+.+. +|+..++ ..+.|++|.|...++.+|..+
T Consensus 400 ~gI~i~~~~~v~~i~~~~g----~v~~v~~~~~~~g~~~~i-----~~D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD----KVTGLTYKDRTTGEEHHL-----ELEGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCcEEEECcEEEEEEcCCC----cEEEEEEEECCCCcEEEE-----EcCEEEEeECCccCchHHhhh
Confidence 6999999999999986543 8899998753 4555555 468999999988888877544
No 287
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.73 E-value=0.056 Score=62.66 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=43.2
Q ss_pred cCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 255 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 255 a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
+++.|++|++++.+++|..++.+ .+..|.+. +|+. + ..+.||+|+|--.+..|+..+|+
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~~~---~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEGVE---ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecCCC---ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcCc
Confidence 35579999999999999754322 45566664 5654 3 35999999998778887777775
No 288
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.73 E-value=0.0086 Score=64.85 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=32.7
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45699999999999999999999 9999999998754
No 289
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.71 E-value=0.092 Score=57.72 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=41.9
Q ss_pred CCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCChHHHH
Q 007210 258 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 321 (612)
Q Consensus 258 ~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl 321 (612)
.|++|++++.++++.-+++ ++++|.+.+. +|+..++ ..+.||+|.|..-++.+|.
T Consensus 401 ~gV~i~~~~~v~~i~~~~~----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCEEEECCeeEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence 5899999999999975543 8888988753 3444445 3689999999877777764
No 290
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.57 E-value=0.095 Score=56.50 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|||||+|..|+-+|..|.+ |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999999 99999999874
No 291
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.54 E-value=0.012 Score=64.06 Aligned_cols=35 Identities=34% Similarity=0.407 Sum_probs=32.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
..+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4699999999999999999999 9999999998743
No 292
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.52 E-value=0.065 Score=61.96 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=42.2
Q ss_pred cCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 255 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 255 a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
+++.|++|++++.+++|.-+ + ++.+|.+. +|+. + ..+.||+|+|.-.+..|+..+|+
T Consensus 192 l~~~GV~v~~~~~v~~i~~~-~----~~~~v~~~--dG~~--i-----~~D~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGA-T----KADRIRFK--DGSS--L-----EADLIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHcCCEEEeCCceEEEEcC-C----ceEEEEEC--CCCE--E-----EcCEEEECCCCCcCcHHHHhcCC
Confidence 34579999999999998643 2 67778775 5653 3 35899999997767777766765
No 293
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.47 E-value=0.074 Score=57.31 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=29.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..|.+ |.+|.++|+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 369999999999999999999 99999999875
No 294
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.46 E-value=0.062 Score=58.27 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 479999999999999999999 99999999986
No 295
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.46 E-value=0.011 Score=66.70 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=32.9
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
..+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 5689999999999999999999 99999999998643
No 296
>PRK12831 putative oxidoreductase; Provisional
Probab=95.46 E-value=0.076 Score=57.47 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|+|||+|..|+-+|..|.+ |.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 79999999999999999999 99999998764
No 297
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.46 E-value=0.14 Score=51.60 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=40.1
Q ss_pred CCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCChHHHHHc
Q 007210 258 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 323 (612)
Q Consensus 258 ~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~S 323 (612)
.|++++++++++++..+ + ++.+|++.+. +|+..++ .++.||+|+|.-.++.+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~-~----~~~~v~~~~~~~g~~~~i-----~~D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD-N----KVEGVKIKNTVTGEEEEL-----KVDGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc-C----cEEEEEEEecCCCceEEE-----EccEEEEeeCCCCChHHHHHh
Confidence 38999999999998743 2 6777877642 3554555 468999999966566666554
No 298
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.44 E-value=0.019 Score=61.15 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=31.9
Q ss_pred cccEEEECCCCchHHHHHhhh-c-cCeeeEeecCCCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLS-Q-NFTVLLLERGGVPFS 116 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~La-e-g~~VlvLEkG~~~~~ 116 (612)
..-|+|||||+||+.+|.+|+ + |++|.|+||.+.+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 346999999999999999875 4 999999999987654
No 299
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.41 E-value=0.012 Score=67.50 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=31.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
....|+|||+|+||+.+|..|+. |++|.|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 45689999999999999999999 99999999864
No 300
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.35 E-value=0.057 Score=62.42 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=27.5
Q ss_pred EEEECCCCchHHHHHhhhc----cCeeeEeecCCCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ----NFTVLLLERGGVP 114 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae----g~~VlvLEkG~~~ 114 (612)
|||||+|+||+.+|.+|.+ +.+|.|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 6899999999999998866 4699999998743
No 301
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.31 E-value=0.022 Score=58.42 Aligned_cols=39 Identities=31% Similarity=0.319 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-c--CeeeEeecCCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-N--FTVLLLERGGVPFS 116 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~~~~~ 116 (612)
....+|+|||+|.+|+++|+.|+. + ..|.|.|++++.++
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 455799999999999999999999 4 56788999986654
No 302
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.011 Score=58.82 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=48.3
Q ss_pred CCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCC-CCeEEEEeecCCCceEEecCCCcCChHHHHHc
Q 007210 257 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 323 (612)
Q Consensus 257 ~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~-g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~S 323 (612)
-+|++|++|++-++|.=|++ +|+|..|++.. |+.+.+.. .+|.+--|-+-+..+|.-+
T Consensus 402 l~Nv~ii~na~Ttei~Gdg~----kV~Gl~Y~dr~sge~~~l~L-----eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 402 LPNVTIITNAQTTEVKGDGD----KVTGLEYRDRVSGEEHHLEL-----EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred CCCcEEEecceeeEEecCCc----eecceEEEeccCCceeEEEe-----eeeEEEEecccChhHhhch
Confidence 47999999999999986654 99999999754 66677643 7899999999999999866
No 303
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.28 E-value=0.014 Score=64.93 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=32.2
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
.-+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4589999999999999999999 99999999976543
No 304
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.26 E-value=0.1 Score=55.00 Aligned_cols=53 Identities=26% Similarity=0.321 Sum_probs=36.3
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 319 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~l 319 (612)
|...+.+ |++|+++++|+.|..+++ + ++|.. .+|.. + .++.||+|+|.. ++.+
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~~----~-~~v~t--~~g~~--~-----~a~~vV~a~G~~-~~~l 193 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDGE----G-WQLLD--ANGEV--I-----AASVVVLANGAQ-AGQL 193 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcCC----e-EEEEe--CCCCE--E-----EcCEEEEcCCcc-cccc
Confidence 4455667 999999999999987643 4 33443 35542 2 359999999975 3433
No 305
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.22 E-value=0.1 Score=56.50 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 69999999999999999999 99999999986
No 306
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.15 E-value=0.092 Score=57.03 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=29.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|||+++
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 207 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 79999999999999999999 99999999986
No 307
>PRK10262 thioredoxin reductase; Provisional
Probab=95.13 E-value=0.2 Score=51.32 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=42.4
Q ss_pred cCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCC--CCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 255 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN--GNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 255 a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~--g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
+++.|+++++++.++++.-++. ++.+|++.+.. +...++ ..+.||++.|--.+..++ .+++
T Consensus 195 l~~~gV~i~~~~~v~~v~~~~~----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGDQM----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcCCc----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHh-hccc
Confidence 3567999999999999975443 67888887432 233344 469999999976666654 4444
No 308
>PRK06370 mercuric reductase; Validated
Probab=95.13 E-value=0.093 Score=56.90 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=29.7
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 378999999999999999999 99999999986
No 309
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.07 E-value=0.096 Score=56.75 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.7
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 369999999999999999999 99999999986
No 310
>PRK06116 glutathione reductase; Validated
Probab=94.94 E-value=0.11 Score=56.16 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=29.2
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 369999999999999999999 99999999876
No 311
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.85 E-value=0.11 Score=56.04 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=29.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|||+++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 79999999999999999999 99999999986
No 312
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.78 E-value=0.19 Score=53.83 Aligned_cols=31 Identities=29% Similarity=0.592 Sum_probs=29.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|+|||+|..|+-+|..|++ |.+|.++++++
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999 99999999875
No 313
>PRK13984 putative oxidoreductase; Provisional
Probab=94.74 E-value=0.03 Score=62.93 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=33.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPF 115 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~ 115 (612)
...+|+|||+|++|+.+|..|++ |++|.|+|+.+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45689999999999999999999 99999999987543
No 314
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=94.68 E-value=0.2 Score=53.56 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=30.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
-++|||+|..|+-.|.-++. |.+|.|||+++.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~ 207 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDR 207 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 49999999999999999999 999999999973
No 315
>PRK07846 mycothione reductase; Reviewed
Probab=94.58 E-value=0.19 Score=54.30 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=30.0
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 479999999999999999999 99999999986
No 316
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.51 E-value=0.21 Score=54.18 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 68999999999999999999 99999999876
No 317
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.023 Score=57.72 Aligned_cols=41 Identities=29% Similarity=0.448 Sum_probs=37.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDV 118 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~ 118 (612)
+++|||||+|.|.-=|+++..|+. |.+||.++|.+..++..
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccc
Confidence 567999999999999999999999 99999999999877654
No 318
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.46 E-value=0.21 Score=54.24 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.2
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
=.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 368999999999999999999 99999999876
No 319
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.41 E-value=0.031 Score=60.25 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=41.6
Q ss_pred hhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 253 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 253 ~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
..+++.|++|+++++|++|..+ + ++..|.. ++.. + .++.||+|+|...+..+|..+|+
T Consensus 199 ~~l~~~gI~v~~~~~v~~i~~~-~----~~~~v~~---~~~~--i-----~~d~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 199 EELRENGVELHLNEFVKSLIGE-D----KVEGVVT---DKGE--Y-----EADVVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHCCCEEEcCCEEEEEecC-C----cEEEEEe---CCCE--E-----EcCEEEECcCCCcCHHHHHhcCc
Confidence 4456789999999999999532 2 5555543 2322 3 35899999998777788888876
No 320
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.38 E-value=0.034 Score=58.97 Aligned_cols=59 Identities=15% Similarity=0.301 Sum_probs=41.1
Q ss_pred hhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHHcCC
Q 007210 252 LASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 325 (612)
Q Consensus 252 l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~SGI 325 (612)
...+++.|+++++++.|+++.. ++ .+ .|+. .+|+. + .++.||+|+|.-.+..|+..+|+
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~-~~----~~-~v~l--~~g~~--i-----~aD~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD-GE----KV-ELTL--QSGET--L-----QADVVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc-CC----EE-EEEE--CCCCE--E-----ECCEEEECCCCChhhHHHHhcCC
Confidence 3345678999999999999864 22 32 3444 35653 3 35899999998777777777766
No 321
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.33 E-value=0.034 Score=59.78 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=29.7
Q ss_pred cEEEECCCCchHHHHHhhhc---cCeeeEeecCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGVP 114 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~~ 114 (612)
.|||||+|+||+.+|.+|.+ +.+|+|+|+.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 59999999999999999987 4799999999753
No 322
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=0.047 Score=55.52 Aligned_cols=41 Identities=29% Similarity=0.327 Sum_probs=37.6
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDV 118 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~ 118 (612)
..+|||||||.|..-.++|...++ |.+||-|+..+++++++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~w 47 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNW 47 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcc
Confidence 357999999999999999999999 99999999999888765
No 323
>PLN02507 glutathione reductase
Probab=94.23 E-value=0.25 Score=54.07 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 69999999999999999999 99999999875
No 324
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=94.09 E-value=0.12 Score=52.14 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=39.8
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 315 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~ 315 (612)
++.+++.+++++-.+++|+.|.++...+...+..+.+. .+++..... ..+-|++.-|.+-
T Consensus 233 li~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~-~d~~~ieLt----~dDlVfvTNgsiT 292 (587)
T COG4716 233 LITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVL-GDAETIELT----PDDLVFVTNGSIT 292 (587)
T ss_pred HHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHh-cCcceeecC----CCceEEEecceec
Confidence 33456789999999999999999865332233333322 345544433 5688999888764
No 325
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.83 E-value=0.27 Score=53.03 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 58999999999999999999 99999999876
No 326
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.067 Score=54.11 Aligned_cols=36 Identities=36% Similarity=0.437 Sum_probs=31.6
Q ss_pred ccEEEECCCCchHHHHHhhhc---cCeeeEeecCCCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGVPFS 116 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~~~~ 116 (612)
.-|+|||||+||+-+|..|-+ +.+|-|.||-|.+.+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 379999999999999999877 589999999986654
No 327
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.44 E-value=0.066 Score=57.30 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=31.8
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
...+|||||+|.||+.+|.+|.. +.+|+|||+.+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 45689999999999999999987 7899999987754
No 328
>PRK14727 putative mercuric reductase; Provisional
Probab=93.25 E-value=0.38 Score=52.42 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=27.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 69999999999999999999 9999999874
No 329
>PTZ00058 glutathione reductase; Provisional
Probab=93.22 E-value=0.43 Score=52.77 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 69999999999999999999 99999999886
No 330
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.16 E-value=0.5 Score=51.11 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
.|+|||+|..|+-+|..|++ |. +|.|+++..
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 79999999999999999998 87 899998753
No 331
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.17 Score=51.11 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=35.8
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFSDV 118 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~~~ 118 (612)
.|||||+|.|.-=|+++.+|+- |.+||+|+|.+..+...
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence 7999999999999999999998 99999999999876543
No 332
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.77 E-value=0.099 Score=55.91 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=32.5
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
-.|-|||||++|+.+|..|+. |++|+|.|+-+...+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 579999999999999999999 999999999875543
No 333
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=92.73 E-value=0.49 Score=51.48 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=36.0
Q ss_pred cCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 255 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 255 a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
+++.|+++++++.|++|..+++ ....|... +|+. + ..+.||+|+|--.+..+|
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~----~~~~v~~~--~g~~--i-----~~D~vl~a~G~~Pn~~~l 293 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNAD----GSKHVTFE--SGKT--L-----DVDVVMMAIGRVPRTQTL 293 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCC----ceEEEEEc--CCCE--E-----EcCEEEEeeCCCcCcccC
Confidence 3457999999999999976543 23345443 4542 3 358999999976666554
No 334
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.55 E-value=0.1 Score=51.79 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=29.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
-|.|||+|.||+-||+.+|+ |.+|.|.|--+.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 48999999999999999999 999999997663
No 335
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.40 E-value=0.64 Score=52.75 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=26.6
Q ss_pred cEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
.|||||+|..|+-+|..+.+ |. +|.++++..
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 69999999999999988877 75 799888764
No 336
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.21 E-value=0.13 Score=53.73 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHHhhhc----cCeeeEeecCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ----NFTVLLLERGGVPF 115 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae----g~~VlvLEkG~~~~ 115 (612)
.|||||+|+||+.+|.+|.+ +.+|+|+|+.....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~ 38 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP 38 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc
Confidence 38999999999999999963 58999999987543
No 337
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.21 E-value=0.74 Score=53.20 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCe-eeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFT-VLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~-VlvLEkG~ 112 (612)
.|||||+|..|+-+|..|.+ |.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999999999999999999 876 99998764
No 338
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.11 E-value=0.77 Score=49.78 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=28.1
Q ss_pred ccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..+.+ |. +|.|+++..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 379999999999999999888 85 799999875
No 339
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=91.99 E-value=0.12 Score=54.32 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=29.0
Q ss_pred ccEEEECCCCchHHHHHhhhc---cCeeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~ 113 (612)
.||||||+|+||+.+|.+|.+ +.+|.||++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 489999999999999999987 468999998763
No 340
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=91.91 E-value=0.15 Score=50.45 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=34.9
Q ss_pred CCcccEEEECCCCchHHHHHhhhc--c-CeeeEeecCCCCCCCCc
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ--N-FTVLLLERGGVPFSDVN 119 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae--g-~~VlvLEkG~~~~~~~~ 119 (612)
.++|.|+|||+|.+|+.+|.++.+ + -+|.+||--.++.-.+.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPg 81 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPG 81 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcc
Confidence 468999999999999999999998 5 59999998765544443
No 341
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=1.6 Score=43.98 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=28.8
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-||.|||+|.+|.-||+-||- -.-|.|||=.+
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 499999999999999999998 66799999775
No 342
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=91.76 E-value=0.6 Score=48.97 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=45.7
Q ss_pred hcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHHHH
Q 007210 254 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 322 (612)
Q Consensus 254 ~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lLl~ 322 (612)
..++.|++++.++.+..|..+..| +++-|... +|+. + .++-||+..|+--+..++..
T Consensus 264 y~e~kgVk~~~~t~~s~l~~~~~G---ev~~V~l~--dg~~--l-----~adlvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 264 YYENKGVKFYLGTVVSSLEGNSDG---EVSEVKLK--DGKT--L-----EADLVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHHhcCeEEEEecceeecccCCCC---cEEEEEec--cCCE--e-----ccCeEEEeeccccccccccc
Confidence 346789999999999999988765 89999886 5653 2 56999999998777777765
No 343
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=91.29 E-value=0.14 Score=49.21 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=28.9
Q ss_pred EEEECCCCchHHHHHhhhc---cCeeeEeecCCCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ---NFTVLLLERGGVP 114 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~~ 114 (612)
+||||+|.||..+|..|+. ..+||+|-+.+..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 7999999999999999998 5799999987654
No 344
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=90.87 E-value=0.52 Score=50.09 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=43.9
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
+....++.|++|+++++|+++..+++ ++++|.. .+|+...+. ++.||||+|.|.+..|.
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~~~----~V~~v~~--~~g~~~~i~-----AD~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFEGG----RVTAVWT--RNHGDIPLR-----ARHFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC----EEEEEEe--eCCceEEEE-----CCEEEEeCCCcccCcee
Confidence 44445678999999999999987754 7777663 356555553 58999999998776653
No 345
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.2 Score=46.91 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=30.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..-.|+|||||+|+-.||+.+++ ..|-+|.|-+-
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~ 41 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM 41 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence 34479999999999999999999 89999999763
No 346
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=90.65 E-value=0.36 Score=55.35 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=33.7
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
.-.-|-|||||++|++||..|-+ |+.|.|-||..+.++
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 34679999999999999999999 999999999876543
No 347
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=90.61 E-value=0.2 Score=53.10 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=32.0
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
-+++|||+|..|+.+|..|.+ |++|.|+|+.+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence 599999999999999999999 9999999999854
No 348
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.09 E-value=2.1 Score=50.42 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|||||+|..|+=+|..+.+ |.+|.++.+..
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 69999999999999999999 99999998763
No 349
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=89.09 E-value=0.38 Score=50.36 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=31.8
Q ss_pred cEEEECCCCchHHHHHhhhc-c--CeeeEeecCCCCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N--FTVLLLERGGVPFSDV 118 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~~~~~~~ 118 (612)
-+||||||.+|+.+|.+|.. - .+|.|+|+-.+..-.+
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p 44 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP 44 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch
Confidence 48999999999999999999 4 8999999998654433
No 350
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=88.83 E-value=0.75 Score=49.69 Aligned_cols=55 Identities=11% Similarity=0.264 Sum_probs=39.6
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeE-EEEeecCCCceEEecCCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQH-QAFLAGNPKSEVILSCGA 313 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~-~v~~~~~a~k~VILaaG~ 313 (612)
+...+++.|.+|+++++|++|..++++ +++||++.+.+|+.. .+ .++.||+|+..
T Consensus 219 l~~~l~~~g~~i~l~~~V~~I~~~~~~---~v~~v~~~~~~~~~~~~~-----~a~~VI~a~p~ 274 (453)
T TIGR02731 219 IVDYITSRGGEVRLNSRLKEIVLNEDG---SVKHFVLADGEGQRRFEV-----TADAYVSAMPV 274 (453)
T ss_pred HHHHHHhcCCEEeCCCeeEEEEECCCC---CEEEEEEecCCCCceeEE-----ECCEEEEcCCH
Confidence 444455679999999999999876554 799999874333222 33 46899999864
No 351
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=88.79 E-value=0.71 Score=50.47 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=47.0
Q ss_pred CCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-CCCeEEEEeecCCCceEEecCCCcCChHH
Q 007210 241 RFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQM 319 (612)
Q Consensus 241 ~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-~g~~~~v~~~~~a~k~VILaaG~~~sp~l 319 (612)
.+|....+..+...+++.|.+|+++++|++|+.+++ +++||...+. .|+...+ .++.||+++-...+.+|
T Consensus 228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~----~~~gv~~~~~~~~~~~~~-----~ad~VI~~~~~~~~~~l 298 (492)
T TIGR02733 228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG----RAGWVVVVDSRKQEDLNV-----KADDVVANLPPQSLLEL 298 (492)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC----eEEEEEEecCCCCceEEE-----ECCEEEECCCHHHHHHh
Confidence 444444334455556678999999999999998875 8889988642 1222233 35889999886545443
No 352
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=88.72 E-value=1.3 Score=51.53 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=43.2
Q ss_pred hhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeC-------CC-------------------CeEEEEeecCCCce
Q 007210 253 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-------NG-------------------NQHQAFLAGNPKSE 306 (612)
Q Consensus 253 ~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~-------~g-------------------~~~~v~~~~~a~k~ 306 (612)
..|.+.|+++..++.-.+|+.|+.| +|+||++... .| ...++ .++.
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g---~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~ 719 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYG---HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDI-----KTKT 719 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCC---eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccc-----cCCE
Confidence 3466789999999999999987655 9999998631 11 22333 6799
Q ss_pred EEecCCCcCChHH
Q 007210 307 VILSCGAIGTPQM 319 (612)
Q Consensus 307 VILaaG~~~sp~l 319 (612)
||+|+|.--+..+
T Consensus 720 vi~A~G~~~~~~~ 732 (1028)
T PRK06567 720 VIMAIGIENNTQF 732 (1028)
T ss_pred EEEecccCCcccc
Confidence 9999997554444
No 353
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.30 E-value=0.42 Score=46.20 Aligned_cols=31 Identities=32% Similarity=0.638 Sum_probs=29.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+||||+|--|..+|..|++ |..|+++|+-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999 99999999976
No 354
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=88.22 E-value=3.3 Score=49.31 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=39.5
Q ss_pred CCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe-------CCC--------CeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 256 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-------ENG--------NQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 256 ~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~-------~~g--------~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
++.|+++++++.+.+|..+++| +|++|++.. .+| +...+ ..+.||+|.|-..++.++
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~~G---~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i-----~~D~Vi~AiG~~p~~~~~ 691 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDAEG---SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDL-----ECDTVIYALGTKANPIIT 691 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCCCC---eEEEEEEEEEEecccCCCCCccccCCCceEEE-----EcCEEEECCCcCCChhhh
Confidence 3468889999988888765544 888887742 122 33344 468999999966665544
Q ss_pred H
Q 007210 321 K 321 (612)
Q Consensus 321 l 321 (612)
.
T Consensus 692 ~ 692 (1006)
T PRK12775 692 Q 692 (1006)
T ss_pred h
Confidence 3
No 355
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=88.03 E-value=0.37 Score=50.44 Aligned_cols=34 Identities=35% Similarity=0.682 Sum_probs=29.7
Q ss_pred ccEEEECCCCchHHHHHhhhc--c------------CeeeEeecCCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ--N------------FTVLLLERGGVP 114 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae--g------------~~VlvLEkG~~~ 114 (612)
-+++|||+|+.|.-+|.+|++ . .+|.|+|+++..
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 579999999999999999988 2 289999999854
No 356
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.36 E-value=0.5 Score=42.33 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=28.1
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
++|+|+|..|+..|.+|++ |.+|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999 99999999875
No 357
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=87.04 E-value=3.8 Score=42.36 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=27.4
Q ss_pred CCcccEEEECCCCchHHHHHhhhc-c--CeeeEeecCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ-N--FTVLLLERGG 112 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~ 112 (612)
.....|+|||||-+++-++..|.+ + .+|.++=|++
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 345789999999999999999999 5 4899998886
No 358
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.59 E-value=0.69 Score=43.17 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=24.7
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|.|||.|.-|+++|..||+ |++|+.++..+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899999999999999999 99999999875
No 359
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=86.07 E-value=0.63 Score=50.04 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 69999999999999999999 999999999874
No 360
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=85.97 E-value=0.51 Score=42.76 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=27.6
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|.|+|+|..|.++|..|++ |.+|.|..+-+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 6899999999999999999 89999998754
No 361
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=84.73 E-value=0.81 Score=49.51 Aligned_cols=32 Identities=31% Similarity=0.618 Sum_probs=30.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 79999999999999999999 999999999864
No 362
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.32 E-value=1.2 Score=45.98 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchHHHHHhhhc--cCeeeEeecCCCC
Q 007210 78 HSAFDYIVVGGGTAGCPLAATLSQ--NFTVLLLERGGVP 114 (612)
Q Consensus 78 ~~~~DvIVVGsG~aG~~aA~~Lae--g~~VlvLEkG~~~ 114 (612)
...+|+|.||-|+.-+.+|+.|.+ +.+++.|||-+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 567999999999999999999999 5899999998843
No 363
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=83.97 E-value=0.99 Score=52.54 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHHhhhc-----cCeeeEeecCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-----NFTVLLLERGGVPF 115 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-----g~~VlvLEkG~~~~ 115 (612)
.|||||+|+||+.+|.+|.+ +.+|.|+++.+...
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 69999999999999999964 47999999998653
No 364
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=83.62 E-value=0.96 Score=42.63 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=27.2
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.|+|||+|.+++-+|..|++ |.+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 579999999999999999999 99999998876
No 365
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=83.46 E-value=1.9 Score=46.87 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=31.6
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
+|+|||+|.+|+++|.+|++ |.+|.|+|+.+..++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 48999999999999999999 999999999876543
No 366
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.95 E-value=1.4 Score=48.10 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|+|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 69999999999999999999 99999999764
No 367
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.54 E-value=1 Score=48.78 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=28.7
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
|.|||.|.+|+.+|..|.+ |++|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 7999999999999999999 999999998763
No 368
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=82.23 E-value=1.1 Score=45.42 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=29.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|.|||+|+-|+..|.+|++ |.+|.++.++.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 58999999999999999999 99999999975
No 369
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=82.22 E-value=1.1 Score=48.23 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 69999999999999999999 99999999986
No 370
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=81.89 E-value=1.1 Score=41.57 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=25.9
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|.|||+|.-|...|..++. |++|.|++..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 6899999999999999999 99999999865
No 371
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=81.37 E-value=1 Score=47.63 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=24.8
Q ss_pred CchHHHHHhhhc-cCeeeEeecCCCCCCC
Q 007210 90 TAGCPLAATLSQ-NFTVLLLERGGVPFSD 117 (612)
Q Consensus 90 ~aG~~aA~~Lae-g~~VlvLEkG~~~~~~ 117 (612)
.||++||.+|++ |.+|+|||+....++.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence 379999999999 9999999999876653
No 372
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=81.19 E-value=1.2 Score=48.09 Aligned_cols=32 Identities=38% Similarity=0.645 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 69999999999999999999 999999999863
No 373
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=81.01 E-value=1.3 Score=47.89 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=29.9
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 379999999999999999999 99999999986
No 374
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.66 E-value=1.5 Score=37.18 Aligned_cols=30 Identities=23% Similarity=0.538 Sum_probs=26.9
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|||||.|.-|..+|..|.+ +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999 67999999975
No 375
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=80.32 E-value=2.7 Score=43.66 Aligned_cols=35 Identities=23% Similarity=0.518 Sum_probs=30.4
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cC---eeeEeecCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NF---TVLLLERGGV 113 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~---~VlvLEkG~~ 113 (612)
++.-+||.|+|+||+.+|..|.+ |. +|.++++-+.
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 45679999999999999999999 74 7999998763
No 376
>PLN02487 zeta-carotene desaturase
Probab=80.29 E-value=2.8 Score=46.50 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=34.0
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCCCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVPFS 116 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~~~ 116 (612)
+..+|+|||+|.+|+++|.+|++ |++|.|+|+.+..++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG 112 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCC
Confidence 44699999999999999999999 999999999876543
No 377
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=80.05 E-value=1.6 Score=44.58 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|.|||+|.-|+..|.+|++ |.+|.++-++.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 59999999999999999999 99999998864
No 378
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=79.83 E-value=2.5 Score=40.82 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cC---eeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NF---TVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~---~VlvLEkG~ 112 (612)
-++|+|+|.+|..+|..|.+ |. +|.|+++-+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 58999999999999999999 85 599999875
No 379
>PRK04148 hypothetical protein; Provisional
Probab=79.72 E-value=1.8 Score=37.84 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=27.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-+++||.| .|..+|..|++ |.+|+.++..+
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 58999999 88878889999 99999999876
No 380
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.65 E-value=1.5 Score=47.26 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=29.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.|+|||+|..|+.+|..|++ |++|.+.++..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 358999999999999999999 99999999864
No 381
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=79.47 E-value=1.6 Score=48.52 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=29.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred EEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 69999999999999999999 99999999986
No 382
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=79.38 E-value=1.2 Score=37.10 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=28.3
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.--|+|||+|..|..-+..|.+ |.+|.|+-.-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4579999999999999999999 9999999865
No 383
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.90 E-value=1.7 Score=38.17 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCe-eeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFT-VLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~-VlvLEkG 111 (612)
.--++|||+|.+|-.++..|++ |.+ |.|+-|-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4569999999999999999999 865 9998875
No 384
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=78.86 E-value=1.7 Score=48.96 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=29.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 69999999999999999999 999999999873
No 385
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=78.71 E-value=1.7 Score=44.08 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=27.0
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeec
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLER 110 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEk 110 (612)
+.|||+|..|+..|..|++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 7899999999999999999 999999998
No 386
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=78.17 E-value=7.3 Score=39.99 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=27.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.+|||+|..|+-.+.--.+ |.+|.++|-.+
T Consensus 213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~ 244 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD 244 (506)
T ss_pred eEEEEcCceeeeehhhHHHhcCCeEEEEEehh
Confidence 57899999999999998888 99999999875
No 387
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.03 E-value=1.9 Score=43.67 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
+.|||+|.-|...|..|++ |.+|.++.+-
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 7999999999999999999 9999999984
No 388
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.58 E-value=2.1 Score=44.09 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.+.|||+|.-|++.|.-||+ |+.|+.++.-+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 37899999999999999999 99999999875
No 389
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.34 E-value=1.8 Score=44.02 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=28.9
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|.|||+|.-|...|..|++ |.+|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 58999999999999999999 99999999875
No 390
>PLN02546 glutathione reductase
Probab=77.26 E-value=2 Score=47.62 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=29.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 79999999999999999999 999999999863
No 391
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=77.01 E-value=3.6 Score=44.27 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=30.6
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 79999999999999999999 9999999998754
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=76.85 E-value=2.2 Score=38.54 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEee
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLE 109 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLE 109 (612)
--++|||+|..|.--|..|.+ |++|.|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 359999999999999999988 99999993
No 393
>PRK13748 putative mercuric reductase; Provisional
Probab=76.57 E-value=2.1 Score=47.67 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.++|||+|..|+-+|..|++ |.+|.|||+.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 69999999999999999999 9999999985
No 394
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=76.38 E-value=2.3 Score=40.34 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=27.4
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeec
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLER 110 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEk 110 (612)
--++|||+|-.|...|..|.+ |.+|.|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 469999999999999999999 999999975
No 395
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=75.65 E-value=2.4 Score=38.83 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=28.2
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..-|+|+|+|..|.-||.-|.. |.+|.++|..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3579999999999999999999 99999999864
No 396
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=75.53 E-value=4.5 Score=40.08 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=27.0
Q ss_pred cccEEEECCCCchHHHHHhhhc-----cC-------eeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-----NF-------TVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-----g~-------~VlvLEkG~~ 113 (612)
+--+||+|+|.+|+.+|..|.+ |. ++.++++-+.
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 3458999999999999988855 43 7888888763
No 397
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.36 E-value=2.4 Score=44.38 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=29.5
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..+++|||+|..|..+|..|.. |.+|.++++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3569999999999999999999 99999999854
No 398
>PRK14694 putative mercuric reductase; Provisional
Probab=75.04 E-value=2.5 Score=45.93 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.++|||+|..|+-+|..|++ |.+|.|++++
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 69999999999999999999 9999999975
No 399
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=74.71 E-value=2.6 Score=39.98 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.6
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
-|+|||+|..|..-+..|.+ |.+|.|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 68999999999999999999 9999999753
No 400
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=74.60 E-value=2.6 Score=43.79 Aligned_cols=31 Identities=26% Similarity=0.242 Sum_probs=27.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cCe-eeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFT-VLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~-VlvLEkG~ 112 (612)
.++|||+|..|+-+|..|++ |.+ |.|+|+..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 59999999999999999988 876 99999864
No 401
>PLN02612 phytoene desaturase
Probab=73.47 E-value=4.4 Score=45.10 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=37.2
Q ss_pred hhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCC
Q 007210 251 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 313 (612)
Q Consensus 251 ~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~ 313 (612)
+...+++.|.+|+++++|++|..++++ ++++|++. +|+. + .++.||+|+..
T Consensus 314 l~~~l~~~G~~I~l~~~V~~I~~~~~g---~v~~v~~~--~G~~--~-----~ad~VI~a~p~ 364 (567)
T PLN02612 314 IVDHFQSLGGEVRLNSRIKKIELNDDG---TVKHFLLT--NGSV--V-----EGDVYVSATPV 364 (567)
T ss_pred HHHHHHhcCCEEEeCCeeeEEEECCCC---cEEEEEEC--CCcE--E-----ECCEEEECCCH
Confidence 333444579999999999999987554 77888774 5653 3 35899998753
No 402
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.40 E-value=2.9 Score=42.03 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-|.|||+|.-|...|..|++ |.+|.+++..+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999 99999999764
No 403
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=73.37 E-value=3.7 Score=44.15 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=31.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGGVP 114 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~~ 114 (612)
.|+|||+|.+|.-+|.+|++ |.+|-++=|.+..
T Consensus 177 rV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 177 RVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred eEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 89999999999999999999 9999999998854
No 404
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=73.04 E-value=3.1 Score=39.39 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
-++|+|.|.-|..+|.+|.+ |.+|++.++.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 49999999999999999999 9999998764
No 405
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=72.61 E-value=2.8 Score=45.70 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=28.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 69999999999999999999 9999999973
No 406
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.60 E-value=2.9 Score=42.03 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=28.2
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|.|||+|.-|...|..|++ |.+|.++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 8999999999999999999 99999999875
No 407
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=72.52 E-value=2 Score=44.58 Aligned_cols=33 Identities=36% Similarity=0.712 Sum_probs=28.6
Q ss_pred ccEEEECCCCchHHHHHhhhc----c-----------CeeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ----N-----------FTVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae----g-----------~~VlvLEkG~~ 113 (612)
--+||||+|+.|.-.|.+|++ + .+|.++|+.+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 578999999999999999976 1 48999999973
No 408
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=72.17 E-value=3.2 Score=41.07 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=29.7
Q ss_pred cccEEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
..-|+|||.|..|+.+|..|+. | .++.|+|.-.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4579999999999999999999 8 6999999764
No 409
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=72.17 E-value=4.8 Score=39.24 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=26.3
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-----------eeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-----------TVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-----------~VlvLEkG~ 112 (612)
+--|||+|+|.+|..+|..|.+ +. ++.++++-+
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G 69 (254)
T cd00762 25 EHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG 69 (254)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence 3458999999999999998877 42 677777765
No 410
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=72.11 E-value=3.9 Score=44.21 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=29.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|+|||+|.+|+=+|..|++ +.+|.++.+++
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 69999999999999999999 89999999875
No 411
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=71.98 E-value=3.2 Score=41.78 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=27.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCe-eeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFT-VLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~-VlvLEkG~ 112 (612)
-++|+|+|.+|.++|..|++ |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 58999999999999999999 875 99988753
No 412
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.90 E-value=3.3 Score=43.71 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=29.0
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-.|+|+|.|..|..+|..|.. |.+|+++|.-+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 369999999999999999988 99999999865
No 413
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=71.69 E-value=3.4 Score=44.22 Aligned_cols=32 Identities=41% Similarity=0.739 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHHHhhhc---------------cCeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ---------------NFTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae---------------g~~VlvLEkG~~ 113 (612)
.++|||+|..|+-+|..|++ +.+|.|+|+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 69999999999999999875 578999999863
No 414
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=71.54 E-value=3.9 Score=40.71 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.7
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
..-+|+|+|+|..|.-+|.-+.- |.+|.+||...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 35689999999999999998888 99999999875
No 415
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=71.40 E-value=3.7 Score=35.94 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=28.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
.-|+|||+|.-|+.+|..|+. |. ++.|++..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 358999999999999999999 85 899999875
No 416
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=71.31 E-value=3.5 Score=42.61 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=28.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.|.|||+|.-|...|..|++ |++|.++.+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 48999999999999999999 9999999975
No 417
>PTZ00052 thioredoxin reductase; Provisional
Probab=71.08 E-value=3.3 Score=45.30 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=28.1
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 79999999999999999999 9999999863
No 418
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=70.98 E-value=3.6 Score=41.33 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=28.2
Q ss_pred ccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
-.|+|||+|.+|.++|..|++ |. +|.|+.|-.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999998 85 799998753
No 419
>PRK07233 hypothetical protein; Provisional
Probab=70.53 E-value=5.3 Score=42.60 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=43.3
Q ss_pred CCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCceEEecCCCcCChHHH
Q 007210 241 RFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 320 (612)
Q Consensus 241 ~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k~VILaaG~~~sp~lL 320 (612)
.+|.......+...+.+.|++|+++++|++|..+++ +++++.. +++. + .++.||+|+..-..++||
T Consensus 194 ~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~----~~~~~~~---~~~~--~-----~ad~vI~a~p~~~~~~ll 259 (434)
T PRK07233 194 EGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGG----GVTGVEV---DGEE--E-----DFDAVISTAPPPILARLV 259 (434)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC----ceEEEEe---CCce--E-----ECCEEEECCCHHHHHhhc
Confidence 344333333455556677999999999999998764 6666652 3432 3 358999999865455443
No 420
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=70.47 E-value=5 Score=36.72 Aligned_cols=33 Identities=36% Similarity=0.417 Sum_probs=28.7
Q ss_pred CcccEEEECCCC-chHHHHHhhhc-cCeeeEeecC
Q 007210 79 SAFDYIVVGGGT-AGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 79 ~~~DvIVVGsG~-aG~~aA~~Lae-g~~VlvLEkG 111 (612)
....++|||+|- .|..+|..|.+ |.+|.|+.+-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457899999996 69999999998 8899999975
No 421
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.37 E-value=4 Score=41.63 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|.|||+|.-|...|..++. |++|.+.+.-+
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999999 99999999865
No 422
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=69.60 E-value=4.2 Score=38.44 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=28.9
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG 111 (612)
..-|+|||+|.-|+.+|..|+. |. +|.|++..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4679999999999999999999 86 79998876
No 423
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.55 E-value=3.9 Score=41.14 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-|.|||+|.-|...|..++. |++|.+++..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48899999999999999999 99999999876
No 424
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.43 E-value=4.2 Score=41.72 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=27.2
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
+.|||+|.-|...|..|++ |.+|.++.+.
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 7899999999999999999 8999999874
No 425
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=68.20 E-value=3.5 Score=40.78 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=25.9
Q ss_pred cccEEEECCCCchHHHHHhhhc-c-------CeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-N-------FTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g-------~~VlvLEkG~ 112 (612)
..+++|||+|..|++.|..+.+ . .+|-|++--.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 3589999999999999977776 3 4777776443
No 426
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=68.01 E-value=4.3 Score=41.84 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=29.5
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
..-|+|||+|.-|+.+|..|+. |. ++.|++...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4569999999999999999999 85 899999865
No 427
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=68.01 E-value=4.4 Score=40.80 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|.|||+|.-|...|..|+. |.+|.++++-+
T Consensus 6 I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8899999999999999999 99999999865
No 428
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=67.83 E-value=4.5 Score=41.72 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=29.9
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
..-|+|||+|.-|+.+|..|+. |. ++.+++...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4679999999999999999999 86 999999864
No 429
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=67.70 E-value=6 Score=34.80 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=26.1
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGGV 113 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~~ 113 (612)
++|+|+|.-+..+|.-+.. |++|.|++--+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999988888 999999997754
No 430
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=67.65 E-value=31 Score=35.91 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcccEEEECCCCchHHHHHhhhc---cCeeeEeecCCCCCCCCcchhHHHHHHHhcCCCCCCccccccCCC
Q 007210 70 PRNGDHHHHSAFDYIVVGGGTAGCPLAATLSQ---NFTVLLLERGGVPFSDVNVSFLQNFHMTLADTSPQSASQYFISTD 146 (612)
Q Consensus 70 ~~~~~~~~~~~~DvIVVGsG~aG~~aA~~Lae---g~~VlvLEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (612)
..+...+......++|||+|++..+++..... +.+|++|-.-+...
T Consensus 168 ~~P~~~~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP------------------------------- 216 (659)
T KOG1346|consen 168 SPPSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP------------------------------- 216 (659)
T ss_pred CCCccccCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc-------------------------------
Q ss_pred ceeecccceecccccccceeeecCCh-hhhcCCCCChhhhcccchhhhhccccCCCCchhHHHHHHHHHHcCCCCCCCCc
Q 007210 147 GVLNARARVLGGGSSINAGFYTRASS-QFIERMGWDAKLVNESFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFT 225 (612)
Q Consensus 147 ~~~~~~g~~lGG~s~~~~~~~~r~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (612)
|.||.- ..+ |-+.+- ....++.+.+.++..
T Consensus 217 --------------------YmRPPLSKEL----W~~~dp-------------------------n~~k~lrfkqwsGke 247 (659)
T KOG1346|consen 217 --------------------YMRPPLSKEL----WWYGDP-------------------------NSAKKLRFKQWSGKE 247 (659)
T ss_pred --------------------ccCCCcchhc----eecCCC-------------------------ChhhheeecccCCcc
Q ss_pred ccCCCceecceeEECCCCceecHHHhhhhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEeCCCCeEEEEeecCCCc
Q 007210 226 YDHIYGTKIGGTIFDRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKS 305 (612)
Q Consensus 226 ~~~~~g~~~~~~~~~~~g~r~~~~~~l~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~~~g~~~~v~~~~~a~k 305 (612)
..-++.+++...+... |+.+...|+-|+.+-.|.+|..++.- |... ||.+... .
T Consensus 248 ---------Rsiffepd~FfvspeD-Lp~~~nGGvAvl~G~kvvkid~~d~~-------V~Ln--DG~~I~Y-------d 301 (659)
T KOG1346|consen 248 ---------RSIFFEPDGFFVSPED-LPKAVNGGVAVLRGRKVVKIDEEDKK-------VILN--DGTTIGY-------D 301 (659)
T ss_pred ---------ceeEecCCcceeChhH-CcccccCceEEEeccceEEeecccCe-------EEec--CCcEeeh-------h
Q ss_pred eEEecCCCcCChHHHH
Q 007210 306 EVILSCGAIGTPQMLK 321 (612)
Q Consensus 306 ~VILaaG~~~sp~lLl 321 (612)
...+||| .+|+-|.
T Consensus 302 kcLIATG--~~Pk~l~ 315 (659)
T KOG1346|consen 302 KCLIATG--VRPKKLQ 315 (659)
T ss_pred heeeecC--cCcccch
No 431
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.60 E-value=4.6 Score=40.71 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-|.|||+|.-|...|..|+. |.+|.+.++.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999999764
No 432
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=67.51 E-value=4.8 Score=40.91 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=27.6
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+.|+|+|+-|+..|.+|++ |..|+++=|.+
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 7899999999999999999 88899988875
No 433
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=67.35 E-value=12 Score=40.69 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=43.4
Q ss_pred hhcCCCCcEEEeccEEEEEEecCCCCCCeEEEEEEEe---C-------CCCeEEEEeecCCCceEEecCCCcCC-hHHHH
Q 007210 253 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD---E-------NGNQHQAFLAGNPKSEVILSCGAIGT-PQMLK 321 (612)
Q Consensus 253 ~~a~~~g~~v~~~~~V~~l~~~~~g~~~~v~GV~~~~---~-------~g~~~~v~~~~~a~k~VILaaG~~~s-p~lLl 321 (612)
..+.+.|+++++++.+++|.-+++ ++++|++.. . .|...++ ..+.||+|.|-..+ ..++.
T Consensus 337 ~~~~~~GV~i~~~~~~~~i~~~~g----~v~~V~~~~~~~~~g~~~~~~g~~~~i-----~~D~VI~A~G~~p~~~~l~~ 407 (471)
T PRK12810 337 SNAHEEGVEREFNVQTKEFEGENG----KVTGVKVVRTELGEGDFEPVEGSEFVL-----PADLVLLAMGFTGPEAGLLA 407 (471)
T ss_pred HHHHHcCCeEEeccCceEEEccCC----EEEEEEEEEEEecCCCccccCCceEEE-----ECCEEEECcCcCCCchhhcc
Confidence 344567999999999999975443 899988652 1 2334445 46999999995544 34555
Q ss_pred HcCC
Q 007210 322 LSGV 325 (612)
Q Consensus 322 ~SGI 325 (612)
..|+
T Consensus 408 ~~gl 411 (471)
T PRK12810 408 QFGV 411 (471)
T ss_pred ccCc
Confidence 4443
No 434
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.33 E-value=4.2 Score=43.77 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=27.9
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
++|+|+|..|+.+|..|++ |.+|++.++..
T Consensus 8 v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 7999999999999999999 99999998764
No 435
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=67.33 E-value=4.9 Score=42.32 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=29.4
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
--|+|||.|..|..+|.+|.. |.+|+|+|.-+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 369999999999999999999 99999999765
No 436
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=67.26 E-value=5.5 Score=42.36 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=28.0
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|.|||.|..|+.+|..|++ |++|+++++.+
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 7899999999999999999 99999999865
No 437
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=66.71 E-value=5.7 Score=39.37 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=26.7
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG 111 (612)
.| |||||+|..|.-++.-|.+ |. |+.+++=-
T Consensus 75 sy-VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd 107 (430)
T KOG2018|consen 75 SY-VVVVGAGGVGSWVANMLLRSGVQKIRIVDFD 107 (430)
T ss_pred cE-EEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence 45 8999999999999999999 84 88888743
No 438
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=66.56 E-value=4.8 Score=40.43 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=29.2
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
--++|||.|..|..+|..|.. |.+|.+.++-+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 469999999999999999999 99999999864
No 439
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=66.48 E-value=5.7 Score=41.45 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
+++|||+|.-|.++|..|++ + .+|.+..|-.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 68999999999999999999 6 8999999874
No 440
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=66.24 E-value=6.5 Score=38.40 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.8
Q ss_pred cccEEEECCCCchHHHHHhhhc-----c-------CeeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-----N-------FTVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-----g-------~~VlvLEkG~~ 113 (612)
+--+||+|+|.+|+..|..|.+ | .++.++++-+.
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gl 70 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGL 70 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEE
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccce
Confidence 4569999999999999988765 4 46888888763
No 441
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=65.84 E-value=5.5 Score=35.22 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=27.3
Q ss_pred EEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
|+|||.|.-|+.+|..|+. |. ++.+++...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 7899999999999999999 85 899998765
No 442
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.64 E-value=5.4 Score=40.97 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-|.|||+|.-|...|..|++ |++|.++.+.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999998854
No 443
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=64.93 E-value=6 Score=42.09 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-|.|||.|..|+.+|..|++ |++|.++++.+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 38999999999999999999 99999999764
No 444
>PRK08328 hypothetical protein; Provisional
Probab=64.89 E-value=5.6 Score=38.58 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=27.7
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERG 111 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG 111 (612)
..-|+|||+|..|+.+|..|+. |. ++.|++..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4569999999999999999999 84 78888654
No 445
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=64.84 E-value=6 Score=40.16 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=26.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cC-eeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NF-TVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG 111 (612)
-|.|||+|.-|+..|..|+. |. +|++++.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 37899999999999999999 75 89999983
No 446
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=64.79 E-value=6.3 Score=36.33 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.1
Q ss_pred EEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
|+|||+|.-|+.+|..|+. |. ++.+++...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7899999999999999999 86 699999764
No 447
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=64.48 E-value=7.6 Score=37.89 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-c-CeeeEeecCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGV 113 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~ 113 (612)
...-|+|||.|.-|+.+|..|+. | .++.+++....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 35689999999999999999999 8 48999887653
No 448
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.48 E-value=5.4 Score=39.97 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=28.3
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|.|||+|.-|...|..++. |.+|++++.-+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999 99999998754
No 449
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=64.42 E-value=5.5 Score=43.86 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=27.3
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
-++|+|+|.+|.++|..|++ |.+|.++.|-
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 58999999999999999999 9999999764
No 450
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=63.87 E-value=6.3 Score=43.65 Aligned_cols=39 Identities=26% Similarity=0.570 Sum_probs=32.5
Q ss_pred cccEEEECCCCchHHHHHhhhc-c-CeeeEeecCCCCCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGVPFSDV 118 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~~~~~~ 118 (612)
..-|+|||+|+-|+.+|..|+. | .++.+++.+.....|.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL 378 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP 378 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc
Confidence 4679999999999999999999 8 4899999886544333
No 451
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=63.75 E-value=6.6 Score=39.95 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.8
Q ss_pred cEEEECCCCchHHHHHhhhc-c--CeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N--FTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~ 112 (612)
.+.|||+|..|+++|..|+. | ..|+++++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 48999999999999999999 7 5899999864
No 452
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=63.41 E-value=6.5 Score=39.41 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
-++|+|+|.++-++|..|++ |. +|.|+.|-.
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 58999999999999999999 74 788987753
No 453
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=63.21 E-value=6 Score=43.00 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=29.0
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.-.|+|+|+|.+|+.++..+.. |.+|.++|.-+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999888888 99999999865
No 454
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.87 E-value=6.4 Score=40.05 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=28.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|.|||+|.-|...|..|+. |.+|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999 99999998754
No 455
>PLN02494 adenosylhomocysteinase
Probab=62.80 E-value=7 Score=41.79 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=29.4
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
=.++|+|.|..|..+|.+|.. |.+|+++|..+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999988 99999999865
No 456
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=62.69 E-value=6.9 Score=42.32 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=27.7
Q ss_pred cEEEECCCCchHHHHHhhhc-c--CeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N--FTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~ 112 (612)
.|.|||.|..|+++|..||+ | .+|+.+|..+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 38999999999999999998 5 7899999765
No 457
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=62.54 E-value=7 Score=39.71 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=27.2
Q ss_pred EEEECCCCchHHHHHhhhc-c--CeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-N--FTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g--~~VlvLEkG~ 112 (612)
|.|||+|..|.++|..|++ | ..|.|+++..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7899999999999999999 7 4899999865
No 458
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=62.39 E-value=7.4 Score=37.93 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=27.1
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cC-----------eeeEeecC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NF-----------TVLLLERG 111 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~-----------~VlvLEkG 111 (612)
....|+|||+|.-|+.++..|++ |. ++.|++..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 45789999999999999999998 62 66776654
No 459
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=62.09 E-value=6.8 Score=41.55 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=28.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-|+|+|.|..|..+|.+|.. |.+|++.|.-+
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 59999999999999999999 99999999865
No 460
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=61.75 E-value=6.9 Score=38.95 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.6
Q ss_pred cEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
.++|+|+|.++-+++..|++ |. +|.|+-|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 69999999999999999998 85 699998764
No 461
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=61.67 E-value=13 Score=40.40 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=27.0
Q ss_pred cccEEEECCCCchHHHHHhhh-----ccC-------eeeEeecCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLS-----QNF-------TVLLLERGGV 113 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~La-----eg~-------~VlvLEkG~~ 113 (612)
+--+|+.|+|.||+.+|..|. +|. ++.++++-+.
T Consensus 297 d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GL 342 (559)
T PTZ00317 297 EQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGL 342 (559)
T ss_pred hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCe
Confidence 345899999999999998886 254 7888887763
No 462
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=61.49 E-value=7 Score=37.01 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=29.9
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
.+.-|+|||.|.-|+.+|..|+. |. ++.|++...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35679999999999999999999 85 899998764
No 463
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=61.01 E-value=7.3 Score=39.82 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=28.5
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|.|||+|.-|...|..|++ |..|.++.+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999 89999999864
No 464
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=60.98 E-value=7.1 Score=37.74 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=28.8
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
..-|+|||.|.-|+.+|..|+. |. ++.|++...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4679999999999999999999 84 888888654
No 465
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=60.90 E-value=8.9 Score=42.64 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.5
Q ss_pred cccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+-.+||||.|.-|-.+|.+|.+ |.+|+++|+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 4679999999999999999998 99999999875
No 466
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=60.81 E-value=8.4 Score=38.65 Aligned_cols=32 Identities=28% Similarity=0.598 Sum_probs=28.5
Q ss_pred EEEECCCCchHHHHHhhhc-c-CeeeEeecCCCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGVP 114 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~~ 114 (612)
|+|||+|.-|+.+|..|+. | .++.+++.+...
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve 35 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVS 35 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 7999999999999999999 8 489999987644
No 467
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=60.73 E-value=5.9 Score=35.81 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=25.2
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-++|+|-|-.|-.+|.+|.. |.+|.|.|.-|
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 58999999999999999999 99999999875
No 468
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=60.27 E-value=8.1 Score=38.44 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.8
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.++|+|+|..|..+|..|++ |.+|.|+.|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58999999999999999999 89999997753
No 469
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=60.24 E-value=7.8 Score=37.00 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=29.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
..-|+|||+|.-|+.+|..|+. |. ++.+++...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4679999999999999999999 85 799998764
No 470
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=60.00 E-value=7.9 Score=39.11 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=29.2
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
--++|||.|..|..+|..|.. |.+|.+.++-+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 469999999999999999999 99999998864
No 471
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=59.86 E-value=8.1 Score=38.96 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=28.1
Q ss_pred EEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|.|||+|.-|...|..|+. |.+|.+.++.+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8999999999999999999 99999999764
No 472
>PRK08223 hypothetical protein; Validated
Probab=59.78 E-value=8.2 Score=38.53 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=29.5
Q ss_pred CcccEEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
...-|+|||.|.-|+.+|..|+. | .++.|++-..
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35679999999999999999999 8 4888988764
No 473
>PRK06153 hypothetical protein; Provisional
Probab=59.52 E-value=9.5 Score=39.63 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=29.4
Q ss_pred cccEEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
..-|.|||.|..|+.+|..|++ | .++.|++...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999 8 4899999764
No 474
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=59.52 E-value=8.2 Score=37.80 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=29.7
Q ss_pred CcccEEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
...-|+|||.|.-|+.+|..|+. | .++.|++..-
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35789999999999999999999 8 4899988764
No 475
>PRK13529 malate dehydrogenase; Provisional
Probab=59.50 E-value=14 Score=40.21 Aligned_cols=33 Identities=24% Similarity=0.664 Sum_probs=27.0
Q ss_pred ccEEEECCCCchHHHHHhhhc-----cC-------eeeEeecCCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-----NF-------TVLLLERGGV 113 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-----g~-------~VlvLEkG~~ 113 (612)
--+||+|+|.||+.+|..|.+ |. ++.++++-+.
T Consensus 296 ~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GL 340 (563)
T PRK13529 296 QRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGL 340 (563)
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCe
Confidence 458999999999999988874 54 7888888764
No 476
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=59.40 E-value=9.7 Score=30.29 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=26.0
Q ss_pred cEEEECCCCchHHHHHhhhc-c-CeeeEeec
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N-FTVLLLER 110 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEk 110 (612)
.++|+|+|..|..+|..|.+ + .+|.+.++
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 59999999999999999999 4 68888887
No 477
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=59.38 E-value=12 Score=42.55 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.1
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC---eeeEeecCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF---TVLLLERGGVP 114 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~---~VlvLEkG~~~ 114 (612)
+--+||.|+|.||..+|..|.. |. ++.++++-+..
T Consensus 185 ~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i 223 (752)
T PRK07232 185 DVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVI 223 (752)
T ss_pred hcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCee
Confidence 4568999999999999999988 86 79999987744
No 478
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=59.36 E-value=8.6 Score=40.50 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHHHhhhccCeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQNFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Laeg~~VlvLEkG~ 112 (612)
|.|||.|.-|+..|..++.|++|+++++..
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~ 32 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCH
Confidence 789999999999998887799999999875
No 479
>PRK08017 oxidoreductase; Provisional
Probab=59.01 E-value=9.5 Score=37.20 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=27.1
Q ss_pred EEEECC-CCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVGG-GTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVGs-G~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
|+|+|+ |.-|..+|.+|++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999999 99999987754
No 480
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=58.96 E-value=8.8 Score=38.47 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=27.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-cC-eeeEeecC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERG 111 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG 111 (612)
-.++|||+|.++-++|..|++ |. +|.|+-|-
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999 85 79998765
No 481
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=58.77 E-value=9.1 Score=36.71 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.8
Q ss_pred EEEEC-CCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 83 YIVVG-GGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 83 vIVVG-sG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
+.||| +|.-|..+|..|++ |.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999 99999987754
No 482
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.41 E-value=8.3 Score=41.55 Aligned_cols=31 Identities=35% Similarity=0.556 Sum_probs=28.7
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|+|||+|.-|..+|..|.+ |..|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 48999999999999999999 99999999865
No 483
>PRK12862 malic enzyme; Reviewed
Probab=58.27 E-value=12 Score=42.98 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=30.0
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC---eeeEeecCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF---TVLLLERGGVP 114 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~---~VlvLEkG~~~ 114 (612)
+.-+||+|+|.||..+|..|.. |. ++.++++-+..
T Consensus 193 ~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i 231 (763)
T PRK12862 193 DVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVV 231 (763)
T ss_pred hcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCee
Confidence 4568999999999999999988 86 79999987643
No 484
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=58.12 E-value=9.1 Score=41.01 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=29.0
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-++|||.|..|..+|.+|.. |.+|++.|+.+
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp 287 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDP 287 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999998 99999999875
No 485
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=57.90 E-value=9 Score=37.15 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=26.6
Q ss_pred EEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 83 YIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 83 vIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
|+|||+|.-|+.++..|+. | .++.|++...
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7899999999999999999 8 4888888753
No 486
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=57.60 E-value=10 Score=35.76 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=29.0
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
+.-|+|||.|.-|+.+|..|+. |. ++.+++...
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4679999999999999999999 84 799998764
No 487
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.54 E-value=9.5 Score=41.03 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-++|+|.|.+|+.+|..|++ |.+|.+.|..+
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999999 99999998765
No 488
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=57.40 E-value=8.9 Score=38.33 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=28.3
Q ss_pred ccEEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
-.++|+|+|.+|..+|..|++ | .+|.|+-|-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 368999999999999999999 8 7999998754
No 489
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=56.86 E-value=13 Score=35.72 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=32.2
Q ss_pred cccEEEECCCCchHHHHHhhhc-c-CeeeEeecCCCCCCCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGVPFSDV 118 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~~~~~~ 118 (612)
+.-|+|||-|.-|..++-.|++ | .++.|++.-...-.+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~ 70 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT 70 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 4569999999999999999999 8 4899999876544333
No 490
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.58 E-value=10 Score=38.58 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=28.4
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.|.|||+|.-|..+|..|++ |++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999999 99999998754
No 491
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=55.49 E-value=11 Score=37.64 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=28.6
Q ss_pred ccEEEECCCCchHHHHHhhhc-c-CeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~ 112 (612)
.-++|+|+|.++-+++..|++ | .+|.|+-|-.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 459999999999999999999 8 5899998864
No 492
>PRK12861 malic enzyme; Reviewed
Probab=55.39 E-value=13 Score=42.38 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=30.2
Q ss_pred CcccEEEECCCCchHHHHHhhhc-cC---eeeEeecCCCC
Q 007210 79 SAFDYIVVGGGTAGCPLAATLSQ-NF---TVLLLERGGVP 114 (612)
Q Consensus 79 ~~~DvIVVGsG~aG~~aA~~Lae-g~---~VlvLEkG~~~ 114 (612)
.+.-|||.|+|.||..+|..|.+ |. ++.++++-+..
T Consensus 188 ~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli 227 (764)
T PRK12861 188 KEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVV 227 (764)
T ss_pred hHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCee
Confidence 34579999999999999999988 86 79999987643
No 493
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=55.38 E-value=11 Score=35.24 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.0
Q ss_pred ccEEEECC-CCchHHHHHhhhc-cCeeeEeecC
Q 007210 81 FDYIVVGG-GTAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 81 ~DvIVVGs-G~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
-.++|+|+ |..|..+|..|++ |.+|.++-|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35899996 9999999999999 8999999764
No 494
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=55.14 E-value=11 Score=41.11 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=27.5
Q ss_pred cEEEECCCCchHHHHHhhhc-c-CeeeEeecCCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-N-FTVLLLERGGV 113 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g-~~VlvLEkG~~ 113 (612)
-|+|||+|..|+-+|..+.+ | .+|.++|.++.
T Consensus 285 ~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 285 KVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 69999999999999877777 6 57999998864
No 495
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=55.12 E-value=12 Score=35.30 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=28.7
Q ss_pred cccEEEECCCCchHHHHHhhhc-cC-eeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ-NF-TVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae-g~-~VlvLEkG~ 112 (612)
..-|+|||.|.-|+.+|..|+. |. ++.+++-..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4569999999999999999999 85 788888654
No 496
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.83 E-value=13 Score=36.98 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=25.4
Q ss_pred EEEECCC---CchHHHHHhhhc-cCeeeEeecC
Q 007210 83 YIVVGGG---TAGCPLAATLSQ-NFTVLLLERG 111 (612)
Q Consensus 83 vIVVGsG---~aG~~aA~~Lae-g~~VlvLEkG 111 (612)
+||.|++ ..|..+|.+|++ |++|++..+.
T Consensus 10 ~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 10 GLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred EEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 8899987 689999999999 9999998653
No 497
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=54.81 E-value=18 Score=39.73 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=25.6
Q ss_pred cccEEEECCCCchHHHHHhhhc------cC-------eeeEeecCC
Q 007210 80 AFDYIVVGGGTAGCPLAATLSQ------NF-------TVLLLERGG 112 (612)
Q Consensus 80 ~~DvIVVGsG~aG~~aA~~Lae------g~-------~VlvLEkG~ 112 (612)
+--|||+|+|.||+.+|..|.+ |. ++.++++-+
T Consensus 321 d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G 366 (581)
T PLN03129 321 DQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG 366 (581)
T ss_pred hceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC
Confidence 3468999999999999987765 32 677777765
No 498
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=54.48 E-value=11 Score=36.08 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.5
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEee
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLE 109 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLE 109 (612)
--|+|||+|..++-=+..|.+ |.+|.|+=
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 469999999999888888888 99999985
No 499
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=54.47 E-value=11 Score=41.08 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=28.8
Q ss_pred ccEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 81 FDYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 81 ~DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
.-|+|+|+|..|+.++..|.. |.+|.+++..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 568999999999999998888 99999999865
No 500
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.43 E-value=11 Score=40.79 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHHhhhc-cCeeeEeecCC
Q 007210 82 DYIVVGGGTAGCPLAATLSQ-NFTVLLLERGG 112 (612)
Q Consensus 82 DvIVVGsG~aG~~aA~~Lae-g~~VlvLEkG~ 112 (612)
-|.|+|.|.+|+++|..|.+ |.+|.+.|+.+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999 99999999865
Done!