BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007213
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/508 (47%), Positives = 334/508 (65%), Gaps = 34/508 (6%)
Query: 105 ADFAGDVEPGVARVVPA--MDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGGRRVL 162
+DF+ D + A++ A ++AVVKV+C HT P++SLPWQ++RQ++S+ S F IG ++L
Sbjct: 28 SDFSRDQQTDPAKIHDASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIGDGKLL 87
Query: 163 TNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELPA 222
TNAH VEH TQVK+K+RG D KY+A VL G +CDIA+L+VE ++FW+G P+ G LP
Sbjct: 88 TNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESEDFWKGAEPLRLGHLPR 147
Query: 223 LQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFND 282
LQD+VTVVGYP+GGDTISVT GVVSRIE+ SY HGS++LLG+QIDAAIN GNSGGPAFND
Sbjct: 148 LQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAFND 207
Query: 283 KGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMENPDL 342
+G+C+G+AFQ + E+ ENIGYVIPT V+ HF+ DYE+NG YTG+P LGV QK+ENP L
Sbjct: 208 QGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNGKYTGYPCLGVLLQKLENPAL 267
Query: 343 RVAMSMKADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSY 402
R + + ++ GV +RRV+PT+ S+VLK D+I+SFD + + +GTVPFR ERI F Y
Sbjct: 268 RECLKVPTNE-GVLVRRVEPTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRY 326
Query: 403 LVSQKYTGDSAAVKVLRDSKILNFNITLATHRRLIPSHNKGRPPSYYIIAGFVFSRCLYL 462
L+SQK+ GD A + ++R + + L L+P H G PSY I+AG VF+
Sbjct: 327 LISQKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEP 386
Query: 463 ISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLWCLRSPLCLNCFNKVXXXXXXXXXX 522
+ E + +KL + S + Q+ L
Sbjct: 387 LIEEECEDTIGLKLLTK-ARYSVARFRGEQIVIL-------------------------- 419
Query: 523 XPWFCKVLVADINIGYEEIVNTQVLAFNGNPVKNLKSLANMVENCDDEFLKFDLEYDQVV 582
+VL ++NIGYE++ N QVL FNG P++N+ LA++++ C D++L F+ E + V
Sbjct: 420 ----SQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCKDKYLVFEFEDNYVA 475
Query: 583 VLRTKTSKAATLDILATHCIPSAMSDDL 610
VL + S +A+L IL + IPS S DL
Sbjct: 476 VLEREASNSASLCILKDYGIPSERSADL 503
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 154/348 (44%), Gaps = 47/348 (13%)
Query: 132 HTEPNFSLPWQR----KRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKLKKRGSDTKY 185
+PN P R R++ S SG I ++TN H + + + + + + D +
Sbjct: 56 ENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ--DGRR 113
Query: 186 LATVLAIG-TECDIAMLTVEDDEFWEGVLPVEFGELPALQ--DAVTVVGYPIG----GDT 238
L L G +E D+A+L ++ V+ G+ L+ D V +G P G G++
Sbjct: 114 LKARLIGGDSETDLAVLKIDAKNLKSLVI----GDSDKLEVGDFVVAIGNPFGLNSFGNS 169
Query: 239 ISVTSGVVSRIEILSY-VHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGI--AFQSLK 295
S T G+VS ++ + G + Q DAAIN GNSGG N KG+ +GI A S
Sbjct: 170 QSATFGIVSALKRSDLNIEGVENFI--QTDAAINPGNSGGALVNAKGELIGINTAILSPY 227
Query: 296 HEDVENIGYVIPTPVIMHFIQDYEKNGA-YTGFPLLGVEWQKMENPDLRVAMSMKADQKG 354
+V IG+ IP ++ Q K G+ + G L+G+ Q + P+L AM D +G
Sbjct: 228 GGNV-GIGFAIPINMVKDVAQQIIKFGSIHRG--LMGIFVQHL-TPELAQAMGYPEDFQG 283
Query: 355 VRIRRVDPTAP-ESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSA 413
+ +V+P +P E LK DII + I V +S G +
Sbjct: 284 ALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQV----------KTTISLLRVGSTV 333
Query: 414 AVKVLRDSKILNFNIT---LATHRRLIPSHNKGRPPSYYIIAGFVFSR 458
+ V RD+K L + + +H + + S+N P Y +A F +
Sbjct: 334 KIIVERDNKPLTLSAVVTDIKSHEQKLQSNN----PFLYGLALRAFEQ 377
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 38/299 (12%)
Query: 106 DFAGDVEPGVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTN 164
+F DV V ++ PA VH E LP+ ++ +S SGF + ++TN
Sbjct: 14 NFIADV---VEKIAPA--------VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTN 62
Query: 165 AHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEF-GELPAL 223
AH V + +VK++ + T Y A + + + DIA++ ++ +G LPV G L
Sbjct: 63 AHVVTNKHRVKVELKNGAT-YEAKIKDVDEKADIALIKID----HQGKLPVLLLGRSSEL 117
Query: 224 Q--DAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPA 279
+ + V +G P +VT+G+VS + G ++++ +Q DA IN GNSGGP
Sbjct: 118 RPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPL 176
Query: 280 FNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE----KNGAYTGFPLLGVEWQ 335
N G+ +GI +LK I + IP+ I F+ + K A T +G+
Sbjct: 177 VNLDGEVIGI--NTLKV--TAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMM 232
Query: 336 KMENPDLRVAMSMKAD----QKGVRIRRVDPTAP-ESEVLKPSDIILSFDGIDI--AND 387
+ + + D G I V P P E+ LK +D+I+S +G + AND
Sbjct: 233 SLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND 291
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 154/348 (44%), Gaps = 47/348 (13%)
Query: 132 HTEPNFSLPWQR----KRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKLKKRGSDTKY 185
+PN P R R++ S SG I ++TN H + + + + + + D +
Sbjct: 56 ENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ--DGRR 113
Query: 186 LATVLAIG-TECDIAMLTVEDDEFWEGVLPVEFGELPALQ--DAVTVVGYPIG----GDT 238
L L G +E D+A+L ++ V+ G+ L+ D V +G P G G++
Sbjct: 114 LKARLIGGDSETDLAVLKIDAKNLKSLVI----GDSDKLEVGDFVVAIGNPFGLNSFGNS 169
Query: 239 ISVTSGVVSRIEILSY-VHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGI--AFQSLK 295
S T G+VS ++ + G + Q DAAIN GN+GG N KG+ +GI A S
Sbjct: 170 QSATFGIVSALKRSDLNIEGVENFI--QTDAAINPGNAGGALVNAKGELIGINTAILSPY 227
Query: 296 HEDVENIGYVIPTPVIMHFIQDYEKNGA-YTGFPLLGVEWQKMENPDLRVAMSMKADQKG 354
+V IG+ IP ++ Q K G+ + G L+G+ Q + P+L AM D +G
Sbjct: 228 GGNV-GIGFAIPINMVKDVAQQIIKFGSIHRG--LMGIFVQHL-TPELAQAMGYPEDFQG 283
Query: 355 VRIRRVDPTAP-ESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSA 413
+ +V+P +P E LK DII + I V +S G +
Sbjct: 284 ALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQV----------KTTISLLRVGSTV 333
Query: 414 AVKVLRDSKILNFNIT---LATHRRLIPSHNKGRPPSYYIIAGFVFSR 458
+ V RD+K L + + +H + + S+N P Y +A F +
Sbjct: 334 KIIVERDNKPLTLSAVVTDIKSHEQKLQSNN----PFLYGLALRAFEQ 377
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 126/267 (47%), Gaps = 30/267 (11%)
Query: 132 HTEPNFSLPWQR----KRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKLKKRGSDTKY 185
+PN P R R++ S SG I ++TN H + + + + + + D +
Sbjct: 56 ENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ--DGRR 113
Query: 186 LATVLAIG-TECDIAMLTVEDDEFWEGVLPVEFGELPALQ--DAVTVVGYPIG----GDT 238
L L G +E D+A+L ++ V+ G+ L+ D V +G P G G++
Sbjct: 114 LKARLIGGDSETDLAVLKIDAKNLKSLVI----GDSDKLEVGDFVVAIGNPFGLNSFGNS 169
Query: 239 ISVTSGVVSRIEILSY-VHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGI--AFQSLK 295
S T G+VS ++ + G + Q DAAIN GNSGG N KG+ +GI A S
Sbjct: 170 QSATFGIVSALKRSDLNIEGVENFI--QTDAAINPGNSGGALVNAKGELIGINTAILSPY 227
Query: 296 HEDVENIGYVIPTPVIMHFIQDYEKNGA-YTGFPLLGVEWQKMENPDLRVAMSMKADQKG 354
+V IG+ IP ++ Q K G+ + G L+G+ Q + P+L AM D +G
Sbjct: 228 GGNV-GIGFAIPINMVKDVAQQIIKFGSIHRG--LMGIFVQHL-TPELAQAMGYPEDFQG 283
Query: 355 VRIRRVDPTAP-ESEVLKPSDIILSFD 380
+ +V+P +P E LK DII +
Sbjct: 284 ALVSQVNPNSPAELAGLKAGDIITQIN 310
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 138/299 (46%), Gaps = 38/299 (12%)
Query: 106 DFAGDVEPGVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTN 164
+F DV V ++ PA VH E LP+ ++ +S SGF + ++TN
Sbjct: 14 NFIADV---VEKIAPA--------VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTN 62
Query: 165 AHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEF-GELPAL 223
AH V + +VK++ + T Y A + + + DIA++ ++ +G LPV G L
Sbjct: 63 AHVVTNKHRVKVELKNGAT-YEAKIKDVDEKADIALIKID----HQGKLPVLLLGRSSEL 117
Query: 224 Q--DAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPA 279
+ + V +G P +VT+G+VS + G ++++ +Q DA IN GN+GGP
Sbjct: 118 RPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPL 176
Query: 280 FNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE----KNGAYTGFPLLGVEWQ 335
N G+ +GI +LK I + IP+ I F+ + K A T +G+
Sbjct: 177 VNLDGEVIGI--NTLKV--TAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMM 232
Query: 336 KMENPDLRVAMSMKAD----QKGVRIRRVDPTAP-ESEVLKPSDIILSFDGIDI--AND 387
+ + + D G I V P P E+ LK +D+I+S +G + AND
Sbjct: 233 SLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND 291
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 153/348 (43%), Gaps = 47/348 (13%)
Query: 132 HTEPNFSLPWQR----KRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKLKKRGSDTKY 185
+PN P R R++ S SG I ++TN H + + + + + + D +
Sbjct: 56 ENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ--DGRR 113
Query: 186 LATVLAIG-TECDIAMLTVEDDEFWEGVLPVEFGELPALQ--DAVTVVGYPIG----GDT 238
L L G +E D+A+L ++ V+ G+ L+ D V +G P G G++
Sbjct: 114 LKARLIGGDSETDLAVLKIDAKNLKSLVI----GDSDKLEVGDFVVAIGNPFGLNSFGNS 169
Query: 239 ISVTSGVVSRIEILSY-VHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGI--AFQSLK 295
S T G+VS ++ + G + Q DAAI GNSGG N KG+ +GI A S
Sbjct: 170 QSATFGIVSALKRSDLNIEGVENFI--QTDAAIGGGNSGGALVNAKGELIGINTAILSPY 227
Query: 296 HEDVENIGYVIPTPVIMHFIQDYEKNGA-YTGFPLLGVEWQKMENPDLRVAMSMKADQKG 354
+V IG+ IP ++ Q K G+ + G L+G+ Q + P+L AM D +G
Sbjct: 228 GGNV-GIGFAIPINMVKDVAQQIIKFGSIHRG--LMGIFVQHL-TPELAQAMGYPEDFQG 283
Query: 355 VRIRRVDPTAP-ESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSA 413
+ +V+P +P E LK DII + I V +S G +
Sbjct: 284 ALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQV----------KTTISLLRVGSTV 333
Query: 414 AVKVLRDSKILNFNIT---LATHRRLIPSHNKGRPPSYYIIAGFVFSR 458
+ V RD+K L + + +H + + S+N P Y +A F +
Sbjct: 334 KIIVERDNKPLTLSAVVTDIKSHEQKLQSNN----PFLYGLALRAFEQ 377
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 134/280 (47%), Gaps = 35/280 (12%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL 220
V+TN H V++ T +K++ K+ A ++ DIA++ +++ + + ++ +
Sbjct: 100 VVTNNHVVDNATVIKVQ-LSDGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADS 155
Query: 221 PALQ--DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
AL+ D +G P G G+T VTSG+VS + S ++ +Q DAAIN GNSGG
Sbjct: 156 DALRVGDYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNSGG 212
Query: 278 PAFNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYT--GFPLLGVEW 334
N G+ +GI L + IG+ IP+ ++ + + G ++G E
Sbjct: 213 ALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL 272
Query: 335 QKMENPDLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFR 393
N +L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 273 ----NSELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------- 320
Query: 394 HGERIGFSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 430
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 ------FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 134/280 (47%), Gaps = 35/280 (12%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL 220
V+TN H V++ T +K++ K+ A ++ DIA++ +++ + + ++ +
Sbjct: 100 VVTNNHVVDNATVIKVQLS-DGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADS 155
Query: 221 PALQ--DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
AL+ D +G P G G+T VTSG+VS + S ++ +Q DAAIN GNSGG
Sbjct: 156 DALRVGDYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNSGG 212
Query: 278 PAFNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYT--GFPLLGVEW 334
N G+ +GI L + IG+ IP+ ++ + + G ++G E
Sbjct: 213 ALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL 272
Query: 335 QKMENPDLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFR 393
N +L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 273 ----NSELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------- 320
Query: 394 HGERIGFSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 430
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 ------FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 35/280 (12%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL 220
V+TN H V++ T +K++ K+ A ++ DIA++ +++ + + ++ +
Sbjct: 100 VVTNNHVVDNATVIKVQLS-DGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADS 155
Query: 221 PALQ--DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
AL+ D +G P G G+T VTSG+VS + S ++ +Q DAAIN GN+GG
Sbjct: 156 DALRVGDYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNAGG 212
Query: 278 PAFNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYT--GFPLLGVEW 334
N G+ +GI L + IG+ IP+ ++ + + G ++G E
Sbjct: 213 ALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL 272
Query: 335 QKMENPDLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFR 393
N +L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 273 ----NSELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------- 320
Query: 394 HGERIGFSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 430
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 ------FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 35/280 (12%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL 220
V+TN H V++ T +K++ K+ A ++ DIA++ +++ + + ++ +
Sbjct: 100 VVTNNHVVDNATVIKVQLS-DGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADS 155
Query: 221 PALQ--DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
AL+ D +G P G G+T VTSG+VS + S ++ +Q DAAIN GN+GG
Sbjct: 156 DALRVGDYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNAGG 212
Query: 278 PAFNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYT--GFPLLGVEW 334
N G+ +GI L + IG+ IP+ ++ + + G ++G E
Sbjct: 213 ALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL 272
Query: 335 QKMENPDLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFR 393
N +L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 273 ----NSELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------- 320
Query: 394 HGERIGFSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 430
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 ------FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 35/280 (12%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL 220
V+TN H V++ T +K++ K+ A ++ DIA++ +++ + + ++ +
Sbjct: 100 VVTNNHVVDNATVIKVQLS-DGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADS 155
Query: 221 PALQ--DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
AL+ D +G P G G+T VTSG+VS + S ++ +Q DAAIN GN+GG
Sbjct: 156 DALRVGDYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNAGG 212
Query: 278 PAFNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYT--GFPLLGVEW 334
N G+ +GI L + IG+ IP+ ++ + + G ++G E
Sbjct: 213 ALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL 272
Query: 335 QKMENPDLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFR 393
N +L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 273 ----NSELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------- 320
Query: 394 HGERIGFSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 430
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 ------FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 146/321 (45%), Gaps = 41/321 (12%)
Query: 129 FCVHTEPNFSLPW----------QRKRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKL 176
FC P S P+ +++++ + SG I + V+TN H V++ T +K+
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 177 KKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIG- 235
+ K+ A + DIA++ +++ + + + L + D +G P G
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQNPKNLTAIKXADSDAL-RVGDYTVAIGNPFGL 173
Query: 236 GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLK 295
G+T VTSG+VS + S ++ +Q DAAIN GNSGG N G+ +GI L
Sbjct: 174 GET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILA 230
Query: 296 HEDVE-NIGYVIPTPVIMHFI-QDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQK 353
+ IG+ IP+ + + Q E G LG+ ++ N +L A + A Q+
Sbjct: 231 PDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG--ELGIXGTEL-NSELAKAXKVDA-QR 286
Query: 354 GVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYT--- 409
G + +V P + ++ +K D+I S +G I++ F+ L +Q T
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS-------------FAALRAQVGTXPV 333
Query: 410 GDSAAVKVLRDSKILNFNITL 430
G + +LRD K +N N+ L
Sbjct: 334 GSKLTLGLLRDGKQVNVNLEL 354
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 29/229 (12%)
Query: 110 DVEPGVARVVPA-MDAVVKVFCVHT------EPNFS---------LPWQRKRQYSSSSSG 153
D E + VV A AVVK+ V T +P F LP +RQ +S SG
Sbjct: 1 DYESPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSG 60
Query: 154 FAIGGR-RVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVE--DDEFWE 210
F +LTN H V + + +KY A + E DIA++ ++ D +F
Sbjct: 61 FIFDPEGYILTNYHVVGGADNITVTML-DGSKYDAEYIGGDEELDIAVIKIKASDKKFPY 119
Query: 211 GVLPVEFGELPALQ--DAVTVVGYPIGGDTISVTSGVVSRI-EILSYVHGSTELLGL-QI 266
+EFG+ ++ + +G P+G +VT GVVS + GS +GL Q
Sbjct: 120 ----LEFGDSDKVKIGEWAIAIGNPLGFQH-TVTVGVVSATNRRIPKPDGSGYYVGLIQT 174
Query: 267 DAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFI 315
DAAIN GNSGGP N G+ +GI + ++ N+G+ IP + F+
Sbjct: 175 DAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL 223
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 27/218 (12%)
Query: 106 DFAGDVEPGVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTN 164
+F DV V ++ PA+ VH E LP+ ++ +S SGF + ++TN
Sbjct: 14 NFIADV---VEKIAPAV--------VHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTN 62
Query: 165 AHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEF-GELPAL 223
AH V + +VK++ + T Y A + + + DIA++ ++ +G LPV G L
Sbjct: 63 AHVVTNKHRVKVELKNGAT-YEAKIKDVDEKADIALIKID----HQGKLPVLLLGRSSEL 117
Query: 224 Q--DAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPA 279
+ + V +G P +VT+G+VS + G ++++ +Q DA IN GNSGGP
Sbjct: 118 RPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPL 176
Query: 280 FNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQD 317
N G+ +GI +LK I + IP+ I F+ +
Sbjct: 177 VNLDGEVIGI--NTLKV--TAGISFAIPSDKIKKFLTE 210
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 146/321 (45%), Gaps = 41/321 (12%)
Query: 129 FCVHTEPNFSLPW----------QRKRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKL 176
FC P S P+ +++++ + SG I + V+TN H V++ T +K+
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 177 KKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIG- 235
+ K+ A + DIA++ +++ + + + L + D +G P G
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQNPKNLTAIKXADSDAL-RVGDYTVAIGNPFGL 173
Query: 236 GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLK 295
G+T VTSG+VS + S ++ +Q DAAIN GN+GG N G+ +GI L
Sbjct: 174 GET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILA 230
Query: 296 HEDVE-NIGYVIPTPVIMHFI-QDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQK 353
+ IG+ IP+ + + Q E G LG+ ++ N +L A + A Q+
Sbjct: 231 PDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG--ELGIXGTEL-NSELAKAXKVDA-QR 286
Query: 354 GVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYT--- 409
G + +V P + ++ +K D+I S +G I++ F+ L +Q T
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS-------------FAALRAQVGTXPV 333
Query: 410 GDSAAVKVLRDSKILNFNITL 430
G + +LRD K +N N+ L
Sbjct: 334 GSKLTLGLLRDGKQVNVNLEL 354
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 146/321 (45%), Gaps = 41/321 (12%)
Query: 129 FCVHTEPNFSLPW----------QRKRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKL 176
FC P S P+ +++++ + SG I + V+TN H V++ T +K+
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 177 KKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIG- 235
+ K+ A + DIA++ +++ + + + L + D +G P G
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQNPKNLTAIKXADSDAL-RVGDYTVAIGNPFGL 173
Query: 236 GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLK 295
G+T VTSG+VS + S ++ +Q DAAIN GN+GG N G+ +GI L
Sbjct: 174 GET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILA 230
Query: 296 HEDVE-NIGYVIPTPVIMHFI-QDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQK 353
+ IG+ IP+ + + Q E G LG+ ++ N +L A + A Q+
Sbjct: 231 PDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG--ELGIXGTEL-NSELAKAXKVDA-QR 286
Query: 354 GVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYT--- 409
G + +V P + ++ +K D+I S +G I++ F+ L +Q T
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS-------------FAALRAQVGTXPV 333
Query: 410 GDSAAVKVLRDSKILNFNITL 430
G + +LRD K +N N+ L
Sbjct: 334 GSKLTLGLLRDGKQVNVNLEL 354
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 27/218 (12%)
Query: 106 DFAGDVEPGVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTN 164
+F DV V ++ PA VH E LP+ ++ +S SGF + ++TN
Sbjct: 31 NFIADV---VEKIAPA--------VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTN 79
Query: 165 AHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEF-GELPAL 223
AH V + +VK++ + T Y A + + + DIA++ ++ +G LPV G L
Sbjct: 80 AHVVTNKHRVKVELKNGAT-YEAKIKDVDEKADIALIKID----HQGKLPVLLLGRSSEL 134
Query: 224 Q--DAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPA 279
+ + V +G P +VT+G+VS + G ++++ +Q DA IN GNSGGP
Sbjct: 135 RPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPL 193
Query: 280 FNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQD 317
N G+ +GI +LK I + IP+ I F+ +
Sbjct: 194 VNLDGEVIGI--NTLKV--TAGISFAIPSDKIKKFLTE 227
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 27/218 (12%)
Query: 106 DFAGDVEPGVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTN 164
+F DV V ++ PA VH E LP+ ++ +S SGF + ++TN
Sbjct: 31 NFIADV---VEKIAPA--------VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTN 79
Query: 165 AHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEF-GELPAL 223
AH V + +VK++ + T Y A + + + DIA++ ++ +G LPV G L
Sbjct: 80 AHVVTNKHRVKVELKNGAT-YEAKIKDVDEKADIALIKID----HQGKLPVLLLGRSSEL 134
Query: 224 Q--DAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPA 279
+ + V +G P +VT+G+VS + G ++++ +Q DA IN GN+GGP
Sbjct: 135 RPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPL 193
Query: 280 FNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQD 317
N G+ +GI +LK I + IP+ I F+ +
Sbjct: 194 VNLDGEVIGI--NTLK--VTAGISFAIPSDKIKKFLTE 227
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 127/297 (42%), Gaps = 36/297 (12%)
Query: 150 SSSGFAIGGR-RVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEF 208
S SGF + ++TN H + + +++ T + A V+ + D+A+L ++ +
Sbjct: 54 SGSGFVWDKQGHIVTNYHVIRGASDLRVT-LADQTTFDAKVVGFDQDKDVAVLRIDAPKN 112
Query: 209 WEGVLPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVS--RIEILSYVHGSTELLGLQI 266
+PV + V +G P G D ++T+GV+S R EI S G +Q
Sbjct: 113 KLRPIPVGVSADLLVGQKVFAIGNPFGLDH-TLTTGVISGLRREISSAATGRPIQDVIQT 171
Query: 267 DAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVEN-IGYVIPTPVIMHFIQDYEKNGAYT 325
DAAIN GNSGGP + G +GI + +G+ IP + + + G T
Sbjct: 172 DAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVT 231
Query: 326 GFPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESEV------------LKPS 373
P+LG+++ PD V + GV + P+ P + L
Sbjct: 232 -RPILGIKFA----PDQSVE---QLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLG 283
Query: 374 DIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITL 430
DII S +G ++N G+ +R ++ Q GD V+VLR ++TL
Sbjct: 284 DIITSVNGTKVSN-GSDLYR---------ILDQCKVGDEVTVEVLRGDHKEKISVTL 330
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 131/307 (42%), Gaps = 37/307 (12%)
Query: 139 LPWQRKRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTEC 196
LP Q + + SG I + VLTN H + ++ ++ ++ A ++ +
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLN-DGREFDAKLIGSDDQS 111
Query: 197 DIAMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYV 255
DIA+L +++ + + +L + D VG P G G T TSG+VS +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKL-RVGDFAVAVGNPFGLGQT--ATSGIVSALG----- 163
Query: 256 HGSTELLGL----QIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPV 310
L GL Q DA+IN GNSGG N G+ +GI L IG+ IP+ +
Sbjct: 164 RSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNM 223
Query: 311 IMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESEV- 369
Q G LLG++ +M + D+ A ++ Q+G + V P + ++
Sbjct: 224 ARTLAQQLIDFGEIK-RGLLGIKGTEM-SADIAKAFNLDV-QRGAFVSEVLPGSGSAKAG 280
Query: 370 LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYT---GDSAAVKVLRDSKILNF 426
+K DII S +G P F+ L S+ T G + +LR+ K L
Sbjct: 281 VKAGDIITSLNG--------KPLNS-----FAELRSRIATTEPGTKVKLGLLRNGKPLEV 327
Query: 427 NITLATH 433
+TL T
Sbjct: 328 EVTLDTS 334
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 115/254 (45%), Gaps = 22/254 (8%)
Query: 140 PWQRKRQYSSSSSGFAIGGR-RVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDI 198
P+ + S+ SGF + ++TNAH V +V+++ DT Y A V A+ DI
Sbjct: 38 PFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDT-YEAVVTAVDPVADI 96
Query: 199 AMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG- 257
A L ++ E LP+ + V +G P ++TSG+VS + + G
Sbjct: 97 ATLRIQTKEPLP-TLPLGRSADVRQGEFVVAMGSPFALQN-TITSGIVSSAQRPARDLGL 154
Query: 258 -STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQ 316
T + +Q DAAI+ GN+GGP N G+ +G+ + I + IP+ + F+
Sbjct: 155 PQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT----AGISFAIPSDRLREFLH 210
Query: 317 DYEKNGAYTGFP-----LLGVEWQKMENPDLRVAMSMKAD-----QKGVRIRRVDPTAPE 366
EK + +G +GV + +P + + ++ Q GV I +V +P
Sbjct: 211 RGEKKNSSSGISGSQRRYIGVMMLTL-SPSILAELQLREPSFPDVQHGVLIHKVILGSPA 269
Query: 367 SEV-LKPSDIILSF 379
L+P D+IL+
Sbjct: 270 HRAGLRPGDVILAI 283
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 130/304 (42%), Gaps = 37/304 (12%)
Query: 139 LPWQRKRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTEC 196
LP Q + + SG I + VLTN H + ++ ++ ++ A ++ +
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLN-DGREFDAKLIGSDDQS 111
Query: 197 DIAMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYV 255
DIA+L +++ + + +L + D VG P G G T TSG+VS +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKL-RVGDFAVAVGNPFGLGQT--ATSGIVSALG----- 163
Query: 256 HGSTELLGL----QIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPV 310
L GL Q DA+IN GN+GG N G+ +GI L IG+ IP+ +
Sbjct: 164 RSGLNLEGLENFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNM 223
Query: 311 IMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESEV- 369
Q G LLG++ +M + D+ A ++ Q+G + V P + ++
Sbjct: 224 ARTLAQQLIDFGEIK-RGLLGIKGTEM-SADIAKAFNLDV-QRGAFVSEVLPGSGSAKAG 280
Query: 370 LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYT---GDSAAVKVLRDSKILNF 426
+K DII S +G P F+ L S+ T G + +LR+ K L
Sbjct: 281 VKAGDIITSLNG--------KPLNS-----FAELRSRIATTEPGTKVKLGLLRNGKPLEV 327
Query: 427 NITL 430
+TL
Sbjct: 328 EVTL 331
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 120/291 (41%), Gaps = 48/291 (16%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 50 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 105
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 106 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGG 162
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQDYEKNGAYTGFPL 329
N G+ +GI S E E IG+ IP T ++ I+D Y G
Sbjct: 163 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG- 221
Query: 330 LGVEWQKMENPDLRVAMSMKADQ-KGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIAND 387
G E + A DQ +G+ + V P P + ++ +D+I+S D
Sbjct: 222 -GREIAPLH------AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVD------- 267
Query: 388 GTVPFRHGERIGFSYL-----VSQKYTGDSAAVKVLRDSKILNFNITLATH 433
+ S L V++ G V V+RD K L +T+ +
Sbjct: 268 --------NKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEY 310
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 121/291 (41%), Gaps = 48/291 (16%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L ++ +P+
Sbjct: 55 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLIIKATGGLP-TIPINAR 110
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 111 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGG 167
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQDYEKNGAYTGFPL 329
N G+ +GI S E E IG+ IP T ++ I+D Y G
Sbjct: 168 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG- 226
Query: 330 LGVEWQKMENPDLRVAMSMKADQ-KGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIAND 387
G E + A DQ +G+ + V P P + ++ +D+I+S D
Sbjct: 227 -GREIAPLH------AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVD------- 272
Query: 388 GTVPFRHGERIGFSYL-----VSQKYTGDSAAVKVLRDSKILNFNITLATH 433
+ S L V++ G V V+RD K L +T+ +
Sbjct: 273 --------NKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEY 315
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 33/189 (17%)
Query: 151 SSGFAIGGRRVLTNAHSVEHY------TQVKLKKRGSDTKY-LATVLAIGTECDIAMLTV 203
++GF IG ++TN H + Y T +G+ Y + ++ + DI+++ +
Sbjct: 25 ATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNI 84
Query: 204 EDD---------EFWEGVLPVEFGELPALQDAVTVVGYPIGGDTISV---TSGVVSRIE- 250
E+ F E V F + + D + V+GYP+ ++G + RI+
Sbjct: 85 EEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKD 144
Query: 251 -ILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTP 309
IL++ DA I GNSG P N + +G+ + + E G V TP
Sbjct: 145 NILNF------------DAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTP 192
Query: 310 VIMHFIQDY 318
I FIQ +
Sbjct: 193 QIKDFIQKH 201
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 119/291 (40%), Gaps = 48/291 (16%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 76 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 131
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GN GG
Sbjct: 132 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINPGNXGG 188
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQDYEKNGAYTGFPL 329
N G+ +GI S E E IG+ IP T ++ I+D Y G
Sbjct: 189 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG- 247
Query: 330 LGVEWQKMENPDLRVAMSMKADQ-KGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIAND 387
G E + A DQ +G+ + V P P + ++ +D+I+S D
Sbjct: 248 -GREIAPLH------AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVD------- 293
Query: 388 GTVPFRHGERIGFSYL-----VSQKYTGDSAAVKVLRDSKILNFNITLATH 433
+ S L V++ G V V+RD K L +T+ +
Sbjct: 294 --------NKPAISALETMAQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEY 336
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 28/233 (12%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 50 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 105
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 106 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGG 162
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQDYEKNGAYTGFPL 329
N G+ GI S E E IG+ IP T + I+D Y G
Sbjct: 163 ALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGRVIRGYIGIG- 221
Query: 330 LGVEWQKMENPDLRVAMSMKADQ-KGVRIRRVDPTAPESEV-LKPSDIILSFD 380
G E + A DQ +G+ + V P P + ++ +D+I+S D
Sbjct: 222 -GREIAPLH------AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVD 267
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 30/188 (15%)
Query: 150 SSSGFAIGGRRVLTNAHSVEHY------TQVKLKKRGSDTKY-LATVLAIGTECDIAMLT 202
S++GF +G +LTN H ++Y T +G+ Y + ++ + D++++
Sbjct: 23 SATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQ 82
Query: 203 VEDD---------EFWEGVLPVEFGELPALQDAVTVVGYPIGGDTISV---TSGVVSRIE 250
VE+ F + V P ++ + + V+GYP V ++G V +E
Sbjct: 83 VEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVE 142
Query: 251 ILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQS-LKHEDVENIGYVIPTP 309
S V+ A SGNSG P N + VGI F S +K++D N V TP
Sbjct: 143 GSSIVY----------SAHTESGNSGSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTP 192
Query: 310 VIMHFIQD 317
I FI +
Sbjct: 193 EIKKFIAE 200
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 139 LPWQRKRQYSSSSSGFAIGGRR--VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTEC 196
LP Q + + SG I + VLTN H + ++ ++ ++ A ++ +
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLN-DGREFDAKLIGSDDQS 111
Query: 197 DIAMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYV 255
DIA+L +++ + + +L + D VG P G G T TSG+VS +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKL-RVGDFAVAVGNPFGLGQT--ATSGIVSALG----- 163
Query: 256 HGSTELLGL----QIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVE-NIGYVIPT 308
L GL Q DA+IN GNSGG N G+ +GI L IG+ IP+
Sbjct: 164 RSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPS 221
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 152 SGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEG 211
+GF I RV+TNAH V V + D + ATV++ D+A+L V
Sbjct: 61 TGFVISPDRVMTNAHVVAGSNNVTVYA--GDKPFEATVVSYDPSVDVAILAVPHLPPPP- 117
Query: 212 VLPVEFGELPALQDA-VTVVGYPIGGDTISVTSGVVSRIEILSY-VHGSTELLG---LQI 266
+ F PA A V V+GYP GG+ + + + I + ++G E + I
Sbjct: 118 ---LVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTI 174
Query: 267 DAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVI 306
A + G+SGGP + G+ +G+ F + +D E G+V+
Sbjct: 175 RADVEQGDSGGPLIDLNGQVLGVVFGA-AIDDAET-GFVL 212
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 197 DIAMLTVEDD-----EFWEGVLPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEI 251
D+A++ V + F + V +F + ++D ++V+GYP G T +
Sbjct: 78 DLAIVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQT---KYKMFESTGT 134
Query: 252 LSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQ-SLKHEDVENIGYVIPTPV 310
++++ G+ ++ DA GNSG P N K + +GI + S K E +N G V TP
Sbjct: 135 INHISGTF----MEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFG-VYFTPQ 189
Query: 311 IMHFIQD 317
+ FIQ+
Sbjct: 190 LKEFIQN 196
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 76 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 131
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 132 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGAIGLNPTGRQNF-LQTDASINHGNSGG 188
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 189 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 151 SSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWE 210
+GF I RV+TNAH V V + D + ATV++ D+A+L V
Sbjct: 42 GTGFVISPDRVMTNAHVVAGSNNVTVYA--GDKPFEATVVSYDPSVDVAILAVPHLPPPP 99
Query: 211 GVLPVEFGELPALQDA-VTVVGYPIGGDTISVTSGVVSRIEILSY-VHGSTELLG---LQ 265
+ F PA A V V+GYP GG+ + + + I + ++G E +
Sbjct: 100 ----LVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYT 155
Query: 266 IDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVI 306
I A + G+SGGP + G+ +G+ F + +D E G+V+
Sbjct: 156 IRADVEQGDSGGPLIDLNGQVLGVVFGA-AIDDAET-GFVL 194
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 76 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 131
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 132 RVPHIGDVVLAIGNPANLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINPGNSGG 188
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 189 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 76 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 131
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 132 RVPHIGDVVLAIGNPANLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGG 188
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 189 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 78 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 133
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 134 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGAIGLNPTGRQNF-LQTDASINHGNSGG 190
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 191 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 76 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 131
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 132 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINPGNSGG 188
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 189 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 66 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 121
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 122 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGG 178
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 179 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 226
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 78 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 133
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 134 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGG 190
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 191 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 50 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 105
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 106 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGG 162
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 163 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 210
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 151 SSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWE 210
+GF I RV+TNAH V V + D + ATV++ D+A+L V
Sbjct: 40 GTGFVISPDRVMTNAHVVAGSNNVTVYA--GDKPFEATVVSYDPSVDVAILAVPHLPPPP 97
Query: 211 GVLPVEFGELPALQDA-VTVVGYPIGGDTISVTSGVVSRIEILSY-VHGSTELLG---LQ 265
+ F PA A V V+GYP GG+ + + + I + ++G E +
Sbjct: 98 ----LVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYT 153
Query: 266 IDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVI 306
I A + G++GGP + G+ +G+ F + +D E G+V+
Sbjct: 154 IRADVEQGDAGGPLIDLNGQVLGVVFGA-AIDDAET-GFVL 192
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 76 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 131
Query: 219 ELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGP 278
+P + D V +G P + +T G++S + + LQ DA+IN GNSGG
Sbjct: 132 RVPHIGDVVLAIGNPYNLGQV-ITQGIISATGRIGLNPTGRQNF-LQTDASINPGNSGGA 189
Query: 279 AFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 190 LVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 78 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 133
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GNSGG
Sbjct: 134 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGG 190
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP 307
N G+ GI S E E IG+ IP
Sbjct: 191 ALVNSLGELXGINTLSFDKSNDGETPEGIGFAIP 224
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 76 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 131
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GN GG
Sbjct: 132 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNXGG 188
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 189 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 78 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 133
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + LQ DA+IN GN GG
Sbjct: 134 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASINHGNXGG 190
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 191 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 76 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 131
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + L DA+IN GNSGG
Sbjct: 132 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LATDASINHGNSGG 188
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 189 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 161 VLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE--CDIAMLTVEDDEFWEGVLPVEFG 218
++TN H + Q+ + + D + +L +G++ D+A+L + +P+
Sbjct: 78 IITNKHVINDADQIIVALQ--DGRVFEALL-VGSDSLTDLAVLKINATGGLP-TIPINAR 133
Query: 219 ELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGG 277
+P + D V +G P G TI T G++S + + L DA+IN GNSGG
Sbjct: 134 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LATDASINHGNSGG 190
Query: 278 PAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 317
N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 191 ALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 188 TVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELPALQ--DAVTVVGYPIGGDTISVTSGV 245
TV+ DIA++ V+ G+ P+ G L+ V +G P+G + +VT+G+
Sbjct: 79 TVVGADPTSDIAVVRVQG---VSGLTPISLGSSSDLRVGQPVLAIGSPLGLEG-TVTTGI 134
Query: 246 VSRIEILSYVHG-----STELLGLQIDAAINSGNSGGPAFNDKGKCVGI--AFQSLKHED 298
VS + G +T L +Q DAAIN GNSGG N + VG+ A +L +
Sbjct: 135 VSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADS 194
Query: 299 VE------NIGYVIP 307
+ +G+ IP
Sbjct: 195 ADAQSGSIGLGFAIP 209
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 299 VENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMEN---PDLRVAMSMKADQKGV 355
+E +G+ IP ++ I+ EKNG T P LG++ + N D+R GV
Sbjct: 1 MEGLGFAIPANDAINIIEQLEKNGKVT-RPALGIQMVNLSNVSTSDIRRLNIPSNVTSGV 59
Query: 356 RIRRVDPTAPESEVLKPSDIILSFDGIDIA 385
+R V P + L+ D+I D +IA
Sbjct: 60 IVRSVQSNMPANGHLEKYDVITKVDDKEIA 89
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 25/164 (15%)
Query: 151 SSGFAIGGRRVLTNAHSVE--HYTQVKLKKRGS--------DTKYLA-TVLAIGTECDIA 199
+SG +G +LTN H V+ H LK S + + A + E D+A
Sbjct: 36 ASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLA 95
Query: 200 MLTVEDDE----FWEGVLPVEFGELPALQ--DAVTVVGYPIGGDTISVTSGVVSRIEILS 253
++ +E E V P Q +TV GYP GD V + S+ +I +
Sbjct: 96 IVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYP--GDK-PVATMWESKGKI-T 151
Query: 254 YVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE 297
Y+ G +Q D + GNSG P FN+K + +GI + + +E
Sbjct: 152 YLKGEA----MQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE 191
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 25/164 (15%)
Query: 151 SSGFAIGGRRVLTNAHSVE--HYTQVKLKKRGS--------DTKYLA-TVLAIGTECDIA 199
+SG +G +LTN H V+ H LK S + + A + E D+A
Sbjct: 36 ASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLA 95
Query: 200 MLTVEDDE----FWEGVLPVEFGELPALQ--DAVTVVGYPIGGDTISVTSGVVSRIEILS 253
++ +E E V P Q +TV GYP GD V + S+ +I +
Sbjct: 96 IVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP--GDK-PVATMWESKGKI-T 151
Query: 254 YVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE 297
Y+ G +Q D + GNSG P FN+K + +GI + + +E
Sbjct: 152 YLKGEA----MQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE 191
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 32/176 (18%)
Query: 149 SSSSGFAIGGRRVLTNAH----------SVEHYTQVKLKKRG-SDTKY----LATVLA-- 191
+S++G IG VLTN H V + G ++T Y + +L
Sbjct: 55 TSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP 114
Query: 192 IGTECDIAMLTVEDDE----FWEGVLPVEFGELPALQDA--VTVVGYPIGGDTISVTSGV 245
G D+A++ ++ D+ + + P + G L+D + ++GYP V
Sbjct: 115 FGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF---DHKVNQMH 171
Query: 246 VSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVEN 301
S IE+ +T GL+ GNSG FN G+ VGI + H D E+
Sbjct: 172 RSEIEL------TTLSRGLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREH 221
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 348 MKADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERI 398
+ D G+ + RV P P S++L+P D I+ +G N HG+ +
Sbjct: 19 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAV 64
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 348 MKADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERI 398
+ D G+ + RV P P S++L+P D I+ +G N HG+ +
Sbjct: 20 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAV 65
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 349 KADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGF 400
+ D G+ + RV P P S++L+P D I+ +G N HG+ +
Sbjct: 39 RPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAVSL 85
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 349 KADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGF 400
+ D G+ + RV P P S++L+P D I+ +G N HG+ +
Sbjct: 31 RPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAVSL 77
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 32/176 (18%)
Query: 149 SSSSGFAIGGRRVLTNAH----------SVEHYTQVKLKKRG-SDTKY----LATVLA-- 191
+S++G IG VLTN H V + G ++T Y + +L
Sbjct: 55 TSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP 114
Query: 192 IGTECDIAMLTVEDDE----FWEGVLPVEFGELPALQDA--VTVVGYPIGGDTISVTSGV 245
G D+A++ ++ D+ + + P + G L+D + ++GYP V
Sbjct: 115 FGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF---DHKVNQMH 171
Query: 246 VSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVEN 301
S IE+ +T GL+ GN+G FN G+ VGI + H D E+
Sbjct: 172 RSEIEL------TTLSRGLRYYGFTVPGNAGSGIFNSNGELVGIHSSKVSHLDREH 221
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 351 DQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTG 410
+ KGV + V P P + L+ D I + DG P E+I SY V +K G
Sbjct: 3 EAKGVYVMSVLPNMPAAGRLEAGDRIAAIDG--------QPINTSEQI-VSY-VREKQAG 52
Query: 411 DSAAVKVLRDSK 422
D V +RD K
Sbjct: 53 DRVRVTFIRDRK 64
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 281 NDKGKCV-GIAFQSLKHEDVENIGYVIPT---PVIMHFIQDYEKNGAYTGFPLLGVE 333
++KG G+ F++ E +G V+P P I I++ KNG G+PL+G++
Sbjct: 531 DEKGNITEGLVFEN------EVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLK 581
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,573,103
Number of Sequences: 62578
Number of extensions: 658711
Number of successful extensions: 1518
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 65
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)