Your job contains 1 sequence.
>007214
MKEVEKSLRKDMVEKVTETQGTRALWIAKRWWRYRPKLPYTYFLEKLDSSEVAAVVFTED
LKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAEVDLLQKRQIHYFLKVLIALLPGIL
ILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVW
DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF
TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK
ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG
KQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGM
GVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISV
FYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVI
SPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRVI
IKKKNCFILNEL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007214
(612 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206380 - symbol:FTSH12 "FTSH protease 12" spe... 2755 8.4e-287 1
TAIR|locus:2157637 - symbol:VAR1 "VARIEGATED 1" species:3... 662 5.2e-65 1
TAIR|locus:2011952 - symbol:FTSH1 "FTSH protease 1" speci... 661 6.7e-65 1
UNIPROTKB|Q3AFJ8 - symbol:ftsH "ATP-dependent zinc metall... 627 2.7e-61 1
TIGR_CMR|CHY_0214 - symbol:CHY_0214 "cell division protei... 627 2.7e-61 1
UNIPROTKB|Q55700 - symbol:ftsH2 "ATP-dependent zinc metal... 615 5.0e-60 1
TAIR|locus:2052806 - symbol:VAR2 "VARIEGATED 2" species:3... 570 2.0e-57 2
TAIR|locus:2009235 - symbol:FTSH8 "FTSH protease 8" speci... 565 5.4e-57 2
TIGR_CMR|GSU_1809 - symbol:GSU_1809 "cell division protei... 578 4.2e-56 1
TIGR_CMR|SO_1197 - symbol:SO_1197 "ATP-dependent metallop... 572 1.8e-55 1
UNIPROTKB|Q5LNU8 - symbol:ftsH "ATP-dependent zinc metall... 532 1.4e-54 2
TIGR_CMR|SPO_3105 - symbol:SPO_3105 "ATP-dependent metall... 532 1.4e-54 2
UNIPROTKB|P37476 - symbol:ftsH "ATP-dependent zinc metall... 558 5.5e-54 1
TIGR_CMR|CPS_3452 - symbol:CPS_3452 "ATP-dependent metall... 535 9.9e-54 2
TIGR_CMR|BA_0064 - symbol:BA_0064 "cell division protein ... 554 1.5e-53 1
UNIPROTKB|P0C5C0 - symbol:ftsH "ATP-dependent zinc metall... 553 1.9e-53 1
TIGR_CMR|CBU_1352 - symbol:CBU_1352 "ATP-dependent metall... 548 6.3e-53 1
UNIPROTKB|Q2GIT4 - symbol:ftsH "ATP-dependent zinc metall... 514 4.8e-52 2
TIGR_CMR|APH_1179 - symbol:APH_1179 "ATP-dependent metall... 514 4.8e-52 2
POMBASE|SPCC965.04c - symbol:SPCC965.04c "mitochondrial i... 538 7.2e-52 1
ASPGD|ASPL0000029469 - symbol:AN5588 species:162425 "Emer... 539 9.0e-52 1
TIGR_CMR|NSE_0423 - symbol:NSE_0423 "ATP-dependent metall... 536 1.2e-51 1
DICTYBASE|DDB_G0284249 - symbol:DDB_G0284249 "peptidase M... 536 1.3e-51 1
UNIPROTKB|Q9KU86 - symbol:ftsH "ATP-dependent zinc metall... 535 1.5e-51 1
TIGR_CMR|VC_0637 - symbol:VC_0637 "cell division protein ... 535 1.5e-51 1
ZFIN|ZDB-GENE-070912-46 - symbol:afg3l2 "AFG3 ATPase fami... 531 9.5e-51 1
UNIPROTKB|P0AAI3 - symbol:ftsH species:83333 "Escherichia... 525 1.7e-50 1
UNIPROTKB|F1N9N5 - symbol:AFG3L2 "Uncharacterized protein... 524 2.2e-50 1
UNIPROTKB|Q2KJI7 - symbol:AFG3L2 "AFG3-like protein 2" sp... 527 2.8e-50 1
UNIPROTKB|Q2GFA1 - symbol:ftsH "ATP-dependent zinc metall... 522 3.6e-50 1
TIGR_CMR|ECH_1098 - symbol:ECH_1098 "ATP-dependent metall... 522 3.6e-50 1
TAIR|locus:2057386 - symbol:ftsh4 "FTSH protease 4" speci... 522 3.6e-50 1
UNIPROTKB|E1BZ74 - symbol:AFG3L2 "Uncharacterized protein... 524 6.2e-50 1
UNIPROTKB|Q9Y4W6 - symbol:AFG3L2 "AFG3-like protein 2" sp... 523 7.4e-50 1
UNIPROTKB|E2QYF3 - symbol:AFG3L2 "Uncharacterized protein... 523 8.1e-50 1
TIGR_CMR|DET_0391 - symbol:DET_0391 "ATP-dependent metall... 518 9.5e-50 1
WB|WBGene00004978 - symbol:spg-7 species:6239 "Caenorhabd... 521 1.0e-49 1
TIGR_CMR|GSU_1180 - symbol:GSU_1180 "cell division protei... 516 1.5e-49 1
RGD|1309722 - symbol:Afg3l1 "AFG3(ATPase family gene 3)-l... 518 1.6e-49 1
MGI|MGI:1928277 - symbol:Afg3l1 "AFG3(ATPase family gene ... 519 1.9e-49 1
MGI|MGI:1916847 - symbol:Afg3l2 "AFG3(ATPase family gene ... 519 2.2e-49 1
UNIPROTKB|F1LN92 - symbol:Afg3l2 "Protein Afg3l2" species... 519 2.2e-49 1
GENEDB_PFALCIPARUM|PF14_0616 - symbol:PF14_0616 "i-AAA pr... 514 2.5e-49 1
UNIPROTKB|Q8IKI9 - symbol:PF14_0616 "ATP-dependent protea... 514 2.5e-49 1
MGI|MGI:1351651 - symbol:Yme1l1 "YME1-like 1 (S. cerevisi... 495 3.5e-49 2
UNIPROTKB|G3V886 - symbol:Yme1l1 "YME1-like 1 (S. cerevis... 495 3.5e-49 2
UNIPROTKB|E1BFQ0 - symbol:E1BFQ0 "Uncharacterized protein... 515 6.1e-49 1
TAIR|locus:2163736 - symbol:FTSH11 "FTSH protease 11" spe... 513 1.1e-48 1
DICTYBASE|DDB_G0267492 - symbol:DDB_G0267492 "peptidase M... 508 1.1e-48 1
CGD|CAL0002950 - symbol:YME1 species:5476 "Candida albica... 504 2.9e-48 1
SGD|S000004695 - symbol:YTA12 "Component of the mitochond... 509 3.4e-48 1
RGD|620764 - symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" ... 485 6.6e-48 2
POMBASE|SPBC543.09 - symbol:yta12 "mitochondrial m-AAA pr... 503 1.0e-47 1
UNIPROTKB|J9NRR9 - symbol:YME1L1 "Uncharacterized protein... 496 2.0e-47 1
UNIPROTKB|F1PRV6 - symbol:YME1L1 "Uncharacterized protein... 496 4.6e-47 1
WB|WBGene00010842 - symbol:ymel-1 species:6239 "Caenorhab... 464 4.7e-47 2
ASPGD|ASPL0000072959 - symbol:AN4557 species:162425 "Emer... 482 5.1e-47 2
UNIPROTKB|F1RVK1 - symbol:YME1L1 "Uncharacterized protein... 496 5.8e-47 1
UNIPROTKB|Q96TA2 - symbol:YME1L1 "ATP-dependent zinc meta... 495 7.9e-47 1
ZFIN|ZDB-GENE-070410-25 - symbol:yme1l1b "YME1-like 1b" s... 492 8.9e-47 1
GENEDB_PFALCIPARUM|PFL1925w - symbol:PFL1925w "cell divis... 497 9.8e-47 1
UNIPROTKB|Q8I526 - symbol:PFL1925w "Cell division protein... 497 9.8e-47 1
UNIPROTKB|A6QR12 - symbol:YME1L1 "Uncharacterized protein... 486 4.1e-46 1
ZFIN|ZDB-GENE-091113-41 - symbol:yme1l1a "YME1-like 1a" s... 486 4.9e-46 1
CGD|CAL0004443 - symbol:orf19.2057 species:5476 "Candida ... 489 6.2e-46 1
SGD|S000000819 - symbol:AFG3 "Component, with Yta12p, of ... 485 9.2e-46 1
UNIPROTKB|F1NXP0 - symbol:SPG7 "Uncharacterized protein" ... 485 9.8e-46 1
UNIPROTKB|I3LLQ8 - symbol:AFG3L2 "Uncharacterized protein... 479 1.3e-45 1
UNIPROTKB|F1NTK8 - symbol:YME1L1 "Uncharacterized protein... 478 3.2e-45 1
UNIPROTKB|F1P519 - symbol:YME1L1 "Uncharacterized protein... 478 3.4e-45 1
TAIR|locus:2075581 - symbol:ftsh7 "FTSH protease 7" speci... 461 3.8e-45 2
TAIR|locus:2138146 - symbol:FtsHi1 "FTSH inactive proteas... 470 4.4e-45 2
SGD|S000006228 - symbol:YME1 "Catalytic subunit of the mi... 477 6.3e-45 1
FB|FBgn0024992 - symbol:CG2658 species:7227 "Drosophila m... 476 1.4e-44 1
TAIR|locus:2154568 - symbol:ftsh9 "FTSH protease 9" speci... 458 1.4e-44 2
TIGR_CMR|CJE_1259 - symbol:CJE_1259 "cell division protei... 458 2.2e-43 1
MGI|MGI:2385906 - symbol:Spg7 "spastic paraplegia 7 homol... 464 2.3e-43 1
TAIR|locus:2066128 - symbol:ftsh3 "FTSH protease 3" speci... 464 2.7e-43 1
UNIPROTKB|A7E2Z6 - symbol:SPG7 "SPG7 protein" species:991... 460 6.2e-43 1
DICTYBASE|DDB_G0293388 - symbol:DDB_G0293388 "ATP-depende... 458 9.5e-43 1
UNIPROTKB|Q9UQ90 - symbol:SPG7 "Paraplegin" species:9606 ... 456 1.9e-42 1
TIGR_CMR|CJE_1085 - symbol:CJE_1085 "cell division protei... 448 2.5e-42 1
TAIR|locus:2025052 - symbol:ftsh10 "FTSH protease 10" spe... 455 2.6e-42 1
FB|FBgn0036702 - symbol:CG6512 species:7227 "Drosophila m... 453 4.6e-42 1
UNIPROTKB|E2R4F3 - symbol:SPG7 "Uncharacterized protein" ... 447 1.1e-40 1
ZFIN|ZDB-GENE-030131-5391 - symbol:spg7 "spastic parapleg... 446 1.6e-40 1
WB|WBGene00021425 - symbol:ppgn-1 species:6239 "Caenorhab... 441 8.6e-40 1
CGD|CAL0000075 - symbol:AFG3 species:5476 "Candida albica... 440 1.6e-39 1
UNIPROTKB|Q5AJC2 - symbol:AFG3 "Putative uncharacterized ... 440 1.6e-39 1
TAIR|locus:2076929 - symbol:AT3G02450 species:3702 "Arabi... 415 2.2e-39 2
DICTYBASE|DDB_G0272120 - symbol:rcaA "peptidase M41, FtsH... 438 3.8e-39 1
CGD|CAL0005827 - symbol:RPT4 species:5476 "Candida albica... 383 5.3e-35 1
GENEDB_PFALCIPARUM|PF10_0081 - symbol:PF10_0081 "26S prot... 378 1.9e-34 1
UNIPROTKB|Q8IJW0 - symbol:PF10_0081 "26S proteasome regul... 378 1.9e-34 1
SGD|S000005785 - symbol:RPT4 "ATPase of the 19S regulator... 378 1.9e-34 1
ZFIN|ZDB-GENE-030131-304 - symbol:psmc6 "proteasome (pros... 377 2.5e-34 1
TAIR|locus:2094892 - symbol:EMB2083 "embryo defective 208... 396 6.1e-34 1
TAIR|locus:2159996 - symbol:RPT4A "regulatory particle tr... 373 7.0e-34 1
FB|FBgn0015282 - symbol:Rpt2 "Regulatory particle triple-... 371 1.2e-33 1
TAIR|locus:2028200 - symbol:AT1G45000 species:3702 "Arabi... 371 1.2e-33 1
WARNING: Descriptions of 595 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2206380 [details] [associations]
symbol:FTSH12 "FTSH protease 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS;IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0009536 "plastid" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009658 "chloroplast
organization" evidence=RCA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 HSSP:Q01853
eggNOG:COG0465 GO:GO:0009535 EMBL:AC007202 GO:GO:0004176 KO:K03798
EMBL:AY035166 IPI:IPI00518515 PIR:A96827 RefSeq:NP_565212.1
UniGene:At.48395 UniGene:At.66914 ProteinModelPortal:Q9SAJ3
SMR:Q9SAJ3 STRING:Q9SAJ3 MEROPS:M41.A06 PaxDb:Q9SAJ3 PRIDE:Q9SAJ3
EnsemblPlants:AT1G79560.1 GeneID:844294 KEGG:ath:AT1G79560
GeneFarm:1828 TAIR:At1g79560 HOGENOM:HOG000090030 InParanoid:Q9SAJ3
OMA:QAVIFIC PhylomeDB:Q9SAJ3 ProtClustDB:CLSN2689328
Genevestigator:Q9SAJ3 Uniprot:Q9SAJ3
Length = 1008
Score = 2755 (974.9 bits), Expect = 8.4e-287, P = 8.4e-287
Identities = 527/600 (87%), Positives = 568/600 (94%)
Query: 1 MKEVEKSLRKDMVEKVTETQGTRALWIAKRWWRYRPKLPYTYFLEKLDSSEVAAVVFTED 60
MKEVEKSLR+D++ + +ET+GTRALWI+KRWWRYRPKLPYTYFL+KLDSSEVAAVVFTED
Sbjct: 323 MKEVEKSLREDVIGRTSETEGTRALWISKRWWRYRPKLPYTYFLQKLDSSEVAAVVFTED 382
Query: 61 LKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAEVDLLQKRQIHYFLKVLIALLPGIL 120
LKRLYVTMKEGFPLEY+VDIPLDPYLFETI ++G EVDLLQKRQIHYF+KV IALLPGIL
Sbjct: 383 LKRLYVTMKEGFPLEYIVDIPLDPYLFETICNAGVEVDLLQKRQIHYFMKVFIALLPGIL 442
Query: 121 ILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVW 180
IL IRE+ MLL ITS R LYKKYNQLFDMAYAENFILPVG VS+TKSMYKEVVLGGDVW
Sbjct: 443 ILWFIRESAMLLLITSKRFLYKKYNQLFDMAYAENFILPVGDVSETKSMYKEVVLGGDVW 502
Query: 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240
DLLDELMIYMGNPMQYYE+ V FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF
Sbjct: 503 DLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 562
Query: 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300
TDSEKSGAA+INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG+K
Sbjct: 563 TDSEKSGAAKINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEK 622
Query: 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360
E+TGIDRFSLRQAVIFICATNRPDELDLEFVR GRIDRRLYIGLPDAKQRVQIF VHSAG
Sbjct: 623 EKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAG 682
Query: 361 KQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGM 420
K LAED++F +LVFRTVGFSGADIRNLVNE+ IMSVRKG S I QQDIVDVLDKQLLEGM
Sbjct: 683 KNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQLLEGM 742
Query: 421 GVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISV 480
GVLLTEEEQQKCEQSVS+EKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETA+SV
Sbjct: 743 GVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSV 802
Query: 481 FYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVI 540
FYPRED +DQGYTTFGY+KMQMVVAHGGRCAER+VFGD+VTDGGKDDLEKITKIAREMVI
Sbjct: 803 FYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVFGDNVTDGGKDDLEKITKIAREMVI 862
Query: 541 SPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRVI 600
SPQ+ARLGL L +++G++D PD+ DG+LIKYRWD P V+P +M++E+SELFTRELTR I
Sbjct: 863 SPQSARLGLTQLVKKIGMVDLPDNPDGELIKYRWDHPHVMPAEMSVEVSELFTRELTRYI 922
>TAIR|locus:2157637 [details] [associations]
symbol:VAR1 "VARIEGATED 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA;IDA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=RCA;TAS] [GO:0009579 "thylakoid" evidence=IDA] [GO:0010205
"photoinhibition" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0007275 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006508 GO:GO:0009941
GO:GO:0004222 GO:GO:0016887 EMBL:AB023032 GO:GO:0010205
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0009535
HOGENOM:HOG000217276 KO:K03798 ProtClustDB:CLSN2688633
GO:GO:0010304 EMBL:AY126987 IPI:IPI00517420 RefSeq:NP_568604.1
UniGene:At.21670 UniGene:At.66720 ProteinModelPortal:Q9FH02
SMR:Q9FH02 STRING:Q9FH02 MEROPS:M41.024 PaxDb:Q9FH02 PRIDE:Q9FH02
EnsemblPlants:AT5G42270.1 GeneID:834232 KEGG:ath:AT5G42270
GeneFarm:4746 TAIR:At5g42270 InParanoid:Q9FH02 OMA:RARASMP
PhylomeDB:Q9FH02 Genevestigator:Q9FH02 GermOnline:AT5G42270
Uniprot:Q9FH02
Length = 704
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 149/374 (39%), Positives = 224/374 (59%)
Query: 174 VLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
V G D L L E++ ++ NP +Y G + +G LL GPPGTGKTL AR +A E+G+PF
Sbjct: 252 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF 311
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHARKDPRRR 286
+ +EF + GA+R+ ++F A+ AP VF+DEIDA+ AG D R +
Sbjct: 312 FSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQ 371
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
T L+ ++DG FS VI + ATNRPD LD +RPGR DR++ + PD
Sbjct: 372 -TINQLLTEMDG---------FSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPD 421
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406
RVQI VHS GK + +DV++E++ RT GF+GAD++NL+NE+ I++ R+ +I +
Sbjct: 422 VAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELKEISKD 481
Query: 407 DIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAF 466
+I D L++ ++ G +K VS EKKRL+A HEAGH ++ L P +D A
Sbjct: 482 EISDALER-IIAG---------PEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAK 531
Query: 467 SQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGK 525
++P G+ ++ F P E+ ++ G + YL+ QM VA GGR AE ++FGD+ VT G
Sbjct: 532 ISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGAS 591
Query: 526 DDLEKITKIAREMV 539
+D +++++AR+MV
Sbjct: 592 NDFMQVSRVARQMV 605
>TAIR|locus:2011952 [details] [associations]
symbol:FTSH1 "FTSH protease 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0031977
"thylakoid lumen" evidence=IDA] [GO:0010206 "photosystem II repair"
evidence=TAS] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=RCA;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0007275
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 eggNOG:COG0465
TIGRFAMs:TIGR01241 GO:GO:0009535 GO:GO:0031977 GO:GO:0004176
GO:GO:0010206 EMBL:AC007980 EMBL:X99808 EMBL:AY091095 EMBL:AY123034
EMBL:Y12780 IPI:IPI00518805 PIR:G96538 RefSeq:NP_564563.1
UniGene:At.21777 ProteinModelPortal:Q39102 SMR:Q39102 STRING:Q39102
MEROPS:M41.020 PaxDb:Q39102 PRIDE:Q39102 EnsemblPlants:AT1G50250.1
GeneID:841447 KEGG:ath:AT1G50250 GeneFarm:2667 TAIR:At1g50250
HOGENOM:HOG000217276 InParanoid:Q39102 KO:K03798 OMA:GGNPAMN
PhylomeDB:Q39102 ProtClustDB:CLSN2688633 Genevestigator:Q39102
GermOnline:AT1G50250 GO:GO:0010304 Uniprot:Q39102
Length = 716
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 150/385 (38%), Positives = 229/385 (59%)
Query: 163 VSDTKSMYKEVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFA 221
V +T + +V G D L L E++ ++ NP +Y G + +G LL GPPGTGKTL A
Sbjct: 254 VPETGVSFADVA-GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLA 312
Query: 222 RTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----A 275
R +A E+G+PF + +EF + GA+R+ ++F A+ AP VF+DEIDA+ A
Sbjct: 313 RAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGA 372
Query: 276 GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGR 335
G D R + T L+ ++DG FS VI + ATNRPD LD +RPGR
Sbjct: 373 GMGGGNDEREQ-TINQLLTEMDG---------FSGNSGVIVLAATNRPDVLDSALLRPGR 422
Query: 336 IDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395
DR++ + PD RV+I VHS GK L +DV+F+++ RT GF+GAD++NL+NE+ I++
Sbjct: 423 FDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILA 482
Query: 396 VRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLA 455
R+ +I + +I D L++ ++ G +K VS EKKRL+A HEAGH ++
Sbjct: 483 ARRELKEISKDEISDALER-IIAG---------PEKKNAVVSEEKKRLVAYHEAGHALVG 532
Query: 456 HLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLV 515
L P +D A ++P G+ ++ F P E+ ++ G + YL+ QM VA GGR AE ++
Sbjct: 533 ALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVI 592
Query: 516 FGDD-VTDGGKDDLEKITKIAREMV 539
FGD+ VT G +D +++++AR+M+
Sbjct: 593 FGDENVTTGASNDFMQVSRVARQMI 617
>UNIPROTKB|Q3AFJ8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 RefSeq:YP_359086.1
ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8 STRING:Q3AFJ8 MEROPS:M41.021
GeneID:3726212 KEGG:chy:CHY_0214 PATRIC:21273609 OMA:TGKADDE
BioCyc:CHYD246194:GJCN-215-MONOMER Uniprot:Q3AFJ8
Length = 619
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 165/514 (32%), Positives = 275/514 (53%)
Query: 38 LPYTYFLEKLDSSEVAAVVFTED--LKRLYVTMKEGFPLEYVVDIPL-DPYLFETIASSG 94
L Y F L+ +VA+V D + + +++G + PL D L++ +
Sbjct: 35 LKYDEFYSLLEKGQVASVAIQTDRTINEISGVLRDG--TRFKTRGPLEDAELYKDLKKMN 92
Query: 95 AEVDLLQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
V+++ ++ ++ +L +LLP +L++ L + +R++ F + A+
Sbjct: 93 VTVEIMPPKEPAFWANLLSSLLPVLLMVGLFFFFMQQAQGGGNRVMS------FGKSRAK 146
Query: 155 NFILPVGYVSDTKSMYKEVVLGGD-VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
+ + K + V G D V + L E++ ++ NP +Y E G + +GVLL G P
Sbjct: 147 L------HTDEKKRVTFADVAGIDEVKEELAEIVEFLKNPRKYNELGARIPKGVLLFGQP 200
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEID 272
GTGKTL AR +A E+G+PF SG++F + GA+R+ ++F A++NAP VF+DEID
Sbjct: 201 GTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEID 260
Query: 273 AI-----AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327
A+ AG D R + T L+ ++DG F+ + +I I ATNRPD LD
Sbjct: 261 AVGRQRGAGLGGGHDEREQ-TLNQLLVEMDG---------FNSNEGIIIIAATNRPDILD 310
Query: 328 LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNL 387
+RPGR DR + + PD R +I VH GK L +DV+ + L RT GF+GAD+ N+
Sbjct: 311 PALLRPGRFDRHIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARRTPGFTGADLANM 370
Query: 388 VNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVH 447
VNE+ +++ R+ I +++ + +++ V+ E++ K +S +KRL+A H
Sbjct: 371 VNEAALLAARRNKKVINMEEMEEAIER-------VIAGPEKKSKV---ISEREKRLVAYH 420
Query: 448 EAGHIVLAHLFPRFD-WHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAH 506
EAGH ++ +L P D H S ++P G+ ++ P ED + Y T L ++ +
Sbjct: 421 EAGHAMVGYLLPHTDPVHKIS-IIPRGRAGGYTLLLPEED---RSYMTKSQLLDEITMLL 476
Query: 507 GGRCAERLVFGDDVTDGGKDDLEKITKIAREMVI 540
GGR AE LV +D++ G ++DLE+ T+ AR MV+
Sbjct: 477 GGRVAEALVL-EDISTGARNDLERATETARRMVM 509
>TIGR_CMR|CHY_0214 [details] [associations]
symbol:CHY_0214 "cell division protein FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
RefSeq:YP_359086.1 ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8
STRING:Q3AFJ8 MEROPS:M41.021 GeneID:3726212 KEGG:chy:CHY_0214
PATRIC:21273609 OMA:TGKADDE BioCyc:CHYD246194:GJCN-215-MONOMER
Uniprot:Q3AFJ8
Length = 619
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 165/514 (32%), Positives = 275/514 (53%)
Query: 38 LPYTYFLEKLDSSEVAAVVFTED--LKRLYVTMKEGFPLEYVVDIPL-DPYLFETIASSG 94
L Y F L+ +VA+V D + + +++G + PL D L++ +
Sbjct: 35 LKYDEFYSLLEKGQVASVAIQTDRTINEISGVLRDG--TRFKTRGPLEDAELYKDLKKMN 92
Query: 95 AEVDLLQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
V+++ ++ ++ +L +LLP +L++ L + +R++ F + A+
Sbjct: 93 VTVEIMPPKEPAFWANLLSSLLPVLLMVGLFFFFMQQAQGGGNRVMS------FGKSRAK 146
Query: 155 NFILPVGYVSDTKSMYKEVVLGGD-VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
+ + K + V G D V + L E++ ++ NP +Y E G + +GVLL G P
Sbjct: 147 L------HTDEKKRVTFADVAGIDEVKEELAEIVEFLKNPRKYNELGARIPKGVLLFGQP 200
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEID 272
GTGKTL AR +A E+G+PF SG++F + GA+R+ ++F A++NAP VF+DEID
Sbjct: 201 GTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEID 260
Query: 273 AI-----AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327
A+ AG D R + T L+ ++DG F+ + +I I ATNRPD LD
Sbjct: 261 AVGRQRGAGLGGGHDEREQ-TLNQLLVEMDG---------FNSNEGIIIIAATNRPDILD 310
Query: 328 LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNL 387
+RPGR DR + + PD R +I VH GK L +DV+ + L RT GF+GAD+ N+
Sbjct: 311 PALLRPGRFDRHIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARRTPGFTGADLANM 370
Query: 388 VNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVH 447
VNE+ +++ R+ I +++ + +++ V+ E++ K +S +KRL+A H
Sbjct: 371 VNEAALLAARRNKKVINMEEMEEAIER-------VIAGPEKKSKV---ISEREKRLVAYH 420
Query: 448 EAGHIVLAHLFPRFD-WHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAH 506
EAGH ++ +L P D H S ++P G+ ++ P ED + Y T L ++ +
Sbjct: 421 EAGHAMVGYLLPHTDPVHKIS-IIPRGRAGGYTLLLPEED---RSYMTKSQLLDEITMLL 476
Query: 507 GGRCAERLVFGDDVTDGGKDDLEKITKIAREMVI 540
GGR AE LV +D++ G ++DLE+ T+ AR MV+
Sbjct: 477 GGRVAEALVL-EDISTGARNDLERATETARRMVM 509
>UNIPROTKB|Q55700 [details] [associations]
symbol:ftsH2 "ATP-dependent zinc metalloprotease FtsH 2"
species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
[GO:0010206 "photosystem II repair" evidence=IMP] [GO:0042651
"thylakoid membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009523 "photosystem II" evidence=IDA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0042651 GO:GO:0010206
HOGENOM:HOG000217276 KO:K03798 PIR:S76378 RefSeq:NP_442160.1
RefSeq:YP_005652219.1 ProteinModelPortal:Q55700 SMR:Q55700
IntAct:Q55700 STRING:Q55700 MEROPS:M41.017 GeneID:12253438
GeneID:952628 KEGG:syn:slr0228 KEGG:syy:SYNGTS_2266 PATRIC:23841938
OMA:NTASTRM Uniprot:Q55700
Length = 627
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 181/530 (34%), Positives = 273/530 (51%)
Query: 37 KLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKE---GFPLEYVVDIPLD-PYLFETIAS 92
++ Y FLE +D+ + +V E+ + V + + L VD+P + P L +
Sbjct: 42 RMTYGRFLEYVDAGRITSVDLYENGRTAIVQVSDPEVDRTLRSRVDLPTNAPELIARLRD 101
Query: 93 SGAEVDLLQKRQ---IHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFD 149
S +D R + F+ LI P +LI SL L SS N
Sbjct: 102 SNIRLDSHPVRNNGMVWGFVGNLI--FPVLLIASLF-----FLFRRSS-------NMPGG 147
Query: 150 MAYAENF-ILPVGYVSDTKS--MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRG 206
A NF + D K+ M+ +V + + L E++ ++ P ++ G + +G
Sbjct: 148 PGQAMNFGKSKARFQMDAKTGVMFDDVAGIDEAKEELQEVVTFLKQPERFTAVGAKIPKG 207
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAF 265
VLL GPPGTGKTL A+ +A E+G+PF SG+EF + GA+R+ ++F A+ NAP
Sbjct: 208 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 267
Query: 266 VFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320
+F+DEIDA+ AG D R + T L+ ++DG + TGI I I AT
Sbjct: 268 IFIDEIDAVGRQRGAGIGGGNDEREQ-TLNQLLTEMDGFEGNTGI---------IIIAAT 317
Query: 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFS 380
NRPD LD +RPGR DR++ + PD R +I +VH+ K+LA +V+ + + RT GFS
Sbjct: 318 NRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFS 377
Query: 381 GADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGM-GVLLTEEEQQKCEQSVSFE 439
GAD+ NL+NE+ I++ R+ S I +I D +D+ ++ GM G L + +
Sbjct: 378 GADLANLLNEAAILTARRRKSAITLLEIDDAVDR-VVAGMEGTPLVDSKS---------- 426
Query: 440 KKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLK 499
KRL+A HE GH ++ L D L+P G+ ++ F P E+ QG TT L
Sbjct: 427 -KRLIAYHEVGHAIVGTLLKDHDPVQKVTLIPRGQAQGLTWFTPNEE---QGLTTKAQLM 482
Query: 500 MQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREMVISPQNARLG 548
++ A GGR AE VFGDD VT G DL+++T++AR+MV + LG
Sbjct: 483 ARIAGAMGGRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMSNLG 532
>TAIR|locus:2052806 [details] [associations]
symbol:VAR2 "VARIEGATED 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008237 "metallopeptidase activity"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010027
"thylakoid membrane organization" evidence=RCA;IMP] [GO:0009507
"chloroplast" evidence=IDA] [GO:0010205 "photoinhibition"
evidence=IMP] [GO:0031977 "thylakoid lumen" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA;TAS]
[GO:0016020 "membrane" evidence=IDA] [GO:0030163 "protein catabolic
process" evidence=IDA] [GO:0072593 "reactive oxygen species
metabolic process" evidence=IDA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042744 "hydrogen peroxide
catabolic process" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0010206
"photosystem II repair" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0008237 GO:GO:0004222 EMBL:AC004669
GO:GO:0010027 GO:GO:0072593 GO:GO:0010205 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0031977
GO:GO:0004176 GO:GO:0010206 HOGENOM:HOG000217276 KO:K03798
GO:GO:0010304 EMBL:AF135189 EMBL:AY045599 EMBL:AY093791
EMBL:AK221155 IPI:IPI00546467 PIR:F84714 RefSeq:NP_850156.1
UniGene:At.22024 UniGene:At.71129 UniGene:At.75189
ProteinModelPortal:O80860 SMR:O80860 IntAct:O80860 STRING:O80860
MEROPS:M41.005 World-2DPAGE:0003:O80860 PaxDb:O80860 PRIDE:O80860
ProMEX:O80860 EnsemblPlants:AT2G30950.1 GeneID:817646
KEGG:ath:AT2G30950 GeneFarm:2504 TAIR:At2g30950 InParanoid:O80860
OMA:LEIIAMR PhylomeDB:O80860 ProtClustDB:CLSN2679937
Genevestigator:O80860 Uniprot:O80860
Length = 695
Score = 570 (205.7 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 136/363 (37%), Positives = 205/363 (56%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E++ ++ P ++ G + +GVLL GPPGTGKTL A+ +A E+G+PF SG+EF +
Sbjct: 241 EVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 300
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGD 299
GA+R+ ++F A+ NAP VFVDEIDA+ + + R T L+ ++DG
Sbjct: 301 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 360
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
+ TG VI + ATNR D LD +RPGR DR++ + +PD K R I VH+
Sbjct: 361 EGNTG---------VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAG 411
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
K+ DV+ E + RT GFSGAD+ NL+NE+ I++ R+ + I ++I D +D+ ++ G
Sbjct: 412 NKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDR-IVAG 470
Query: 420 M-GVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAI 478
M G ++T+ + K L+A HE GH V L P D L+P G+ +
Sbjct: 471 MEGTVMTDGKS-----------KSLVAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQARGL 519
Query: 479 SVFYPRED-TIDQGYTTFGYLKMQMVVAHGGRCAERLVFGD-DVTDGGKDDLEKITKIAR 536
+ F P +D T+ F ++V GGR AE ++FGD +VT G DL++IT +AR
Sbjct: 520 TWFIPSDDPTLISKQQLFA----RIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLAR 575
Query: 537 EMV 539
+MV
Sbjct: 576 QMV 578
Score = 38 (18.4 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 37 KLPYTYFLEKLDSSEVAAVVFTED 60
++ Y+ FLE LD V V E+
Sbjct: 91 RMSYSRFLEYLDKDRVNKVDLYEN 114
>TAIR|locus:2009235 [details] [associations]
symbol:FTSH8 "FTSH protease 8" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=TAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AC007592
eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798 GO:GO:0010304
ProtClustDB:CLSN2679937 EMBL:AF419565 EMBL:BT002649 EMBL:BT003813
EMBL:AY045951 IPI:IPI00539195 RefSeq:NP_563766.3 UniGene:At.17054
ProteinModelPortal:Q8W585 SMR:Q8W585 STRING:Q8W585 MEROPS:M41.025
PaxDb:Q8W585 PRIDE:Q8W585 ProMEX:Q8W585 EnsemblPlants:AT1G06430.1
GeneID:837154 KEGG:ath:AT1G06430 GeneFarm:2474 TAIR:At1g06430
InParanoid:Q8W585 OMA:NANADEQ PhylomeDB:Q8W585
Genevestigator:Q8W585 Uniprot:Q8W585
Length = 685
Score = 565 (203.9 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 135/372 (36%), Positives = 209/372 (56%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E++ ++ P ++ G + +GVLL GPPGTGKTL A+ +A E+G+PF SG+EF +
Sbjct: 234 EVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 293
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGD 299
GA+R+ ++F A+ NAP VFVDEIDA+ + + R T L+ ++DG
Sbjct: 294 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 353
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
+ TG VI + ATNR D LD +RPGR DR++ + +PD K R I VHS
Sbjct: 354 EGNTG---------VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSG 404
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
K+ V+ E + RT GFSGAD+ NL+NE+ I++ R+G + I ++I D +D+ ++ G
Sbjct: 405 NKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDR-IVAG 463
Query: 420 M-GVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAI 478
M G ++T+ + K L+A HE GH + L P D L+P G+ +
Sbjct: 464 MEGTVMTDGKS-----------KSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGL 512
Query: 479 SVFYPRED-TIDQGYTTFGYLKMQMVVAHGGRCAERLVFGD-DVTDGGKDDLEKITKIAR 536
+ F P +D T+ F ++V GGR AE ++FG+ +VT G DL++IT +A+
Sbjct: 513 TWFIPSDDPTLISKQQLFA----RIVGGLGGRAAEEVIFGESEVTTGAVSDLQQITGLAK 568
Query: 537 EMVISPQNARLG 548
+MV + + +G
Sbjct: 569 QMVTTFGMSEIG 580
Score = 39 (18.8 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 37 KLPYTYFLEKLDSSEVAAVVFTED 60
++ Y+ FLE LD V V E+
Sbjct: 84 RMSYSRFLEYLDKGRVEKVDLYEN 107
>TIGR_CMR|GSU_1809 [details] [associations]
symbol:GSU_1809 "cell division protein FtsH"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
RefSeq:NP_952859.2 GeneID:2688702 KEGG:gsu:GSU1809 PATRIC:22026473
ProtClustDB:CLSK828573 BioCyc:GSUL243231:GH27-1860-MONOMER
Uniprot:Q74C66
Length = 610
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 142/376 (37%), Positives = 214/376 (56%)
Query: 172 EVVLGGD-VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230
E V G D + L+E++ ++ +P ++ + G + +GVLL GPPGTGKTL AR +A E+G+
Sbjct: 153 EDVAGVDEAKEELEEIIQFLKDPKKFTKLGGRIPKGVLLVGPPGTGKTLLARAVAGEAGV 212
Query: 231 PFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD-----PR 284
PF SG++F + GA+R+ ++F ++NAP +F+DEIDA+ GRH
Sbjct: 213 PFFSISGSDFVEMFVGVGASRVRDLFVQGKKNAPCIIFIDEIDAV-GRHRGAGLGGGHDE 271
Query: 285 RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344
R T L+ ++DG F + VI I ATNRPD LD +RPGR DR++ +
Sbjct: 272 REQTLNQLLVEMDG---------FESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPQ 322
Query: 345 PDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQ 404
PD K R I VH+ LA DV+ + T GFSGAD+ N+VNE+ +++ RK S ++
Sbjct: 323 PDVKGREMILKVHTKKTPLASDVDLGVIARGTPGFSGADLSNVVNEAALLAARKDKSFVE 382
Query: 405 QQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFD-W 463
+D D DK L MGV ++ +S E+K+ A HEAGH ++A L P D
Sbjct: 383 MKDFDDAKDKVL---MGV-------ERRSMVISEEEKKNTAYHEAGHTLVAKLIPGTDPV 432
Query: 464 HAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDG 523
H S ++P G+ +++ P ED Y L ++ V GGR AE ++F +++T G
Sbjct: 433 HKVS-IIPRGRALGVTMQLPIEDK--HSYNKESLLN-RIAVLMGGRAAEEIIF-NELTTG 487
Query: 524 GKDDLEKITKIAREMV 539
+D+E+ T+IAR+MV
Sbjct: 488 AGNDIERATEIARKMV 503
>TIGR_CMR|SO_1197 [details] [associations]
symbol:SO_1197 "ATP-dependent metalloprotease FtsH"
species:211586 "Shewanella oneidensis MR-1" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0051301 "cell division" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006200
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
OMA:RSIIDQC RefSeq:NP_716822.2 ProteinModelPortal:Q8EHM2 SMR:Q8EHM2
GeneID:1169025 KEGG:son:SO_1197 PATRIC:23522048
ProtClustDB:CLSK906146 Uniprot:Q8EHM2
Length = 652
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 156/512 (30%), Positives = 260/512 (50%)
Query: 37 KLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPL-DPYLFETIASSGA 95
K+ Y+ FL+ + +VA V D + + + + G ++ +PL D L + G
Sbjct: 34 KMDYSTFLDNVRDGQVATVEVKSDQRTIEGSKRTGE--KFTTIMPLYDQDLINDLDRKGI 91
Query: 96 EVDLLQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAEN 155
+ + + + ++ I+ P +L++ V + + + K F + A+
Sbjct: 92 TMKGQEAEESGFLTQIFISWFPMLLLIG-----VWIFFMRQMQGGGGKGAMSFGKSKAK- 145
Query: 156 FILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGT 215
++ + K+ + +V + + + EL+ Y+ +P ++ + G + GVL+ GPPGT
Sbjct: 146 -LMSEDQI---KTTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGT 201
Query: 216 GKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI 274
GKTL A+ +A ES +PF SG++F + GA+R+ +MF A+++AP +F+DEIDA+
Sbjct: 202 GKTLLAKAIAGESKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261
Query: 275 -----AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLE 329
AG D R + T ++ ++DG F + +I I ATNRPD LD
Sbjct: 262 GRQRGAGLGGGHDEREQ-TLNQMLVEMDG---------FEGNEGIIVIAATNRPDVLDSA 311
Query: 330 FVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVN 389
+RPGR DR++ +GLPD + R QI VH L+EDV + T GFSGAD+ NLVN
Sbjct: 312 LLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVN 371
Query: 390 ESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEA 449
E+ + + R + ++ DK + MG ++ +S +K + A HEA
Sbjct: 372 EAALFAARGNRRVVGMEEFERAKDKIM---MGA-------ERRSMVMSEAEKEMTAYHEA 421
Query: 450 GHIVLAHLFPRFD-WHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGG 508
GH ++ L P D H + ++P G+ ++ F P D I Q L+ Q+ VA+GG
Sbjct: 422 GHAIVGCLVPEHDPVHKVT-IIPRGRALGVTFFLPEADAISQSRRK---LESQISVAYGG 477
Query: 509 RCAERLVFGDD-VTDGGKDDLEKITKIAREMV 539
R AE L++G + V+ G D++ T IAR MV
Sbjct: 478 RLAEELIYGTEKVSTGASQDIKYATSIARNMV 509
>UNIPROTKB|Q5LNU8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 532 (192.3 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 130/367 (35%), Positives = 203/367 (55%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L+E++ ++ NP ++ G + +G LL GPPGTGKTL AR +A E+G+PF SG++F +
Sbjct: 168 LEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVE 227
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQL 296
GA+R+ +MF A++NAP VF+DEIDA+ GRH + R T L+ ++
Sbjct: 228 MFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV-GRHRGAGYGGGNDEREQTLNQLLVEM 286
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG F + VI + ATNR D LD +RPGR DR + +G PD K R +I V
Sbjct: 287 DG---------FEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGV 337
Query: 357 HSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
H+ L DV+ + T GFSGAD+ NLVNE+ +M+ R G + +D + DK +
Sbjct: 338 HARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDFENAKDKVM 397
Query: 417 L--EGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGK 474
+ E ++LT+++++K A HEAGH V+ P D + ++P G
Sbjct: 398 MGAERRSMVLTQDQKEKT------------AYHEAGHAVVGLALPMCDPVYKATIIPRGG 445
Query: 475 ETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITK 533
+ V P D ++ + K+ M +A G+ AE L +G+D V++G D+++ ++
Sbjct: 446 ALGMVVSLPEMDRLNW-HRDECQQKLAMTMA--GKAAEILKYGEDHVSNGPAGDIQQASQ 502
Query: 534 IAREMVI 540
+AR MV+
Sbjct: 503 LARAMVM 509
Score = 49 (22.3 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 40 YTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAEVDL 99
Y+ F+ +D V V+ + R Y T +G ++V P D + + V
Sbjct: 40 YSEFVSAVDEGNVTKVILDGEQIR-YRT-SDG--RDFVTIKPGDAEVTTLLIDKNIPVRA 95
Query: 100 LQKRQIHYFLKVLIALLPGILILSL 124
+K+Q F +I LLP +L++ +
Sbjct: 96 -EKQQQSGFQSFIITLLPFLLLIGV 119
>TIGR_CMR|SPO_3105 [details] [associations]
symbol:SPO_3105 "ATP-dependent metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 532 (192.3 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 130/367 (35%), Positives = 203/367 (55%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L+E++ ++ NP ++ G + +G LL GPPGTGKTL AR +A E+G+PF SG++F +
Sbjct: 168 LEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVE 227
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQL 296
GA+R+ +MF A++NAP VF+DEIDA+ GRH + R T L+ ++
Sbjct: 228 MFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV-GRHRGAGYGGGNDEREQTLNQLLVEM 286
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG F + VI + ATNR D LD +RPGR DR + +G PD K R +I V
Sbjct: 287 DG---------FEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGV 337
Query: 357 HSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
H+ L DV+ + T GFSGAD+ NLVNE+ +M+ R G + +D + DK +
Sbjct: 338 HARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDFENAKDKVM 397
Query: 417 L--EGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGK 474
+ E ++LT+++++K A HEAGH V+ P D + ++P G
Sbjct: 398 MGAERRSMVLTQDQKEKT------------AYHEAGHAVVGLALPMCDPVYKATIIPRGG 445
Query: 475 ETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITK 533
+ V P D ++ + K+ M +A G+ AE L +G+D V++G D+++ ++
Sbjct: 446 ALGMVVSLPEMDRLNW-HRDECQQKLAMTMA--GKAAEILKYGEDHVSNGPAGDIQQASQ 502
Query: 534 IAREMVI 540
+AR MV+
Sbjct: 503 LARAMVM 509
Score = 49 (22.3 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 40 YTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAEVDL 99
Y+ F+ +D V V+ + R Y T +G ++V P D + + V
Sbjct: 40 YSEFVSAVDEGNVTKVILDGEQIR-YRT-SDG--RDFVTIKPGDAEVTTLLIDKNIPVRA 95
Query: 100 LQKRQIHYFLKVLIALLPGILILSL 124
+K+Q F +I LLP +L++ +
Sbjct: 96 -EKQQQSGFQSFIITLLPFLLLIGV 119
>UNIPROTKB|P37476 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0008233 "peptidase activity" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IDA] [GO:0030428 "cell septum"
evidence=IDA] [GO:0043934 "sporulation" evidence=IMP]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0006950 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0007049
GO:GO:0030163 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0043934
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0008233
GO:GO:0030428 EMBL:D26185 HOGENOM:HOG000217276 KO:K03798 PIR:E69627
RefSeq:NP_387950.1 ProteinModelPortal:P37476 SMR:P37476
IntAct:P37476 MEROPS:M41.009 EnsemblBacteria:EBBACT00000001428
GeneID:938094 KEGG:bsu:BSU00690 PATRIC:18971613 GenoList:BSU00690
OMA:ENMSYST ProtClustDB:CLSK886567 BioCyc:BSUB:BSU00690-MONOMER
Uniprot:P37476
Length = 637
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 135/385 (35%), Positives = 212/385 (55%)
Query: 162 YVSDTKSM-YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLF 220
Y + K + +K+V + L E++ ++ +P ++ E G + +GVLL GPPGTGKTL
Sbjct: 151 YTEEKKRVKFKDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLL 210
Query: 221 ARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI----- 274
A+ A E+G+PF SG++F + GA+R+ ++F A++NAP +F+DEIDA+
Sbjct: 211 AKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRG 270
Query: 275 AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334
AG D R + T L+ ++DG FS + +I I ATNR D LD +RPG
Sbjct: 271 AGLGGGHDEREQ-TLNQLLVEMDG---------FSANEGIIIIAATNRADILDPALLRPG 320
Query: 335 RIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIM 394
R DR++ + PD R + VH+ K L E VN + + RT GFSGAD+ NL+NE+ ++
Sbjct: 321 RFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALV 380
Query: 395 SVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 454
+ R+ KI +DI + D+ ++ G K + +S +++ ++A HE GH V+
Sbjct: 381 AARQNKKKIDARDIDEATDR-VIAGPA---------KKSRVISKKERNIVAYHEGGHTVI 430
Query: 455 AHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERL 514
+ D ++P G+ +V PRED Q T L ++V GGR AE +
Sbjct: 431 GLVLDEADMVHKVTIVPRGQAGGYAVMLPREDRYFQ---TKPELLDKIVGLLGGRVAEEI 487
Query: 515 VFGDDVTDGGKDDLEKITKIAREMV 539
+FG+ V+ G +D ++ T IAR MV
Sbjct: 488 IFGE-VSTGAHNDFQRATNIARRMV 511
>TIGR_CMR|CPS_3452 [details] [associations]
symbol:CPS_3452 "ATP-dependent metalloprotease FtsH"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 OMA:RSIIDQC
RefSeq:YP_270126.1 ProteinModelPortal:Q47YJ4 SMR:Q47YJ4
STRING:Q47YJ4 GeneID:3519317 KEGG:cps:CPS_3452 PATRIC:21469851
BioCyc:CPSY167879:GI48-3480-MONOMER Uniprot:Q47YJ4
Length = 660
Score = 535 (193.4 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 128/380 (33%), Positives = 205/380 (53%)
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
K+ + +V + + + EL+ Y+ P ++ + G + G+LL G PGTGKTL A+ +A
Sbjct: 150 KTTFADVAGCDEAKEDVAELVDYLREPSRFQKLGGRIPSGILLVGQPGTGKTLLAKAIAG 209
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHAR 280
E+ +PF SG++F + GA+R+ +MF A++ AP +F+DEIDA+ AG
Sbjct: 210 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGMGGG 269
Query: 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D R + T ++ ++DG F + VI I ATNRPD LD +RPGR DR++
Sbjct: 270 HDEREQ-TLNQMLVEMDG---------FEGNEGVIVIAATNRPDVLDPALLRPGRFDRQV 319
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
+GLPD + R QI VH L +DV E + T GFSGAD+ NLVNE+ + + R
Sbjct: 320 TVGLPDIRGREQILKVHMRKVPLGDDVKAEVIARGTPGFSGADLANLVNEAALCAARTAR 379
Query: 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPR 460
+ ++ DK + MG +E + +S ++ + A HEAGH ++ L P
Sbjct: 380 RVVSMKEFDAAKDKIM---MG---SERKSMVMSES----EREMTAYHEAGHAIIGRLVPD 429
Query: 461 FDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD- 519
D ++P G+ ++++ P +D +L+ + +GGR AE +++G D
Sbjct: 430 HDPVYKVSIIPRGRALGVTMYLPEQDRFSHSKQ---HLESNISSLYGGRVAEEVIYGSDK 486
Query: 520 VTDGGKDDLEKITKIAREMV 539
V+ G +D+E+ T IAR+MV
Sbjct: 487 VSTGASNDIERATNIARKMV 506
Score = 38 (18.4 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 170 YKEVVLGGDVWDLLDELM 187
YK V+ GG DL+++L+
Sbjct: 67 YKTVIPGGYDRDLINDLV 84
>TIGR_CMR|BA_0064 [details] [associations]
symbol:BA_0064 "cell division protein FtsH" species:198094
"Bacillus anthracis str. Ames" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0051301 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0030163 HOGENOM:HOG000217277 TIGRFAMs:TIGR01241 KO:K03798
ProtClustDB:CLSK886567 HSSP:Q9LCZ4 OMA:QINMEEV RefSeq:NP_842633.1
RefSeq:YP_016667.1 RefSeq:YP_026351.1 ProteinModelPortal:Q81VX5
SMR:Q81VX5 IntAct:Q81VX5 DNASU:1086600
EnsemblBacteria:EBBACT00000009752 EnsemblBacteria:EBBACT00000016661
EnsemblBacteria:EBBACT00000022411 GeneID:1086600 GeneID:2819677
GeneID:2851579 KEGG:ban:BA_0064 KEGG:bar:GBAA_0064 KEGG:bat:BAS0064
BioCyc:BANT260799:GJAJ-73-MONOMER BioCyc:BANT261594:GJ7F-75-MONOMER
Uniprot:Q81VX5
Length = 633
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 132/379 (34%), Positives = 209/379 (55%)
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
K +++V + L E++ ++ +P ++ E G + +GVLL GPPGTGKTL AR +A
Sbjct: 158 KVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAG 217
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHAR 280
E+G+PF SG++F + GA+R+ ++F A++NAP +F+DEIDA+ AG
Sbjct: 218 EAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGG 277
Query: 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D R + T L+ ++DG F + +I I ATNRPD LD +RPGR DR++
Sbjct: 278 HDEREQ-TLNQLLVEMDG---------FGANEGIIIIAATNRPDILDPALLRPGRFDRQI 327
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
+ PD R + VH+ K L E++N + RT GFSGAD+ NL+NE+ +++ R+
Sbjct: 328 TVDRPDVNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDK 387
Query: 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPR 460
KI DI + D+ ++ G K + +S +++ ++A HEAGH V+ +
Sbjct: 388 KKIDMSDIDEATDR-VIAGPA---------KKSRVISEKERNIVAFHEAGHTVIGVVLDE 437
Query: 461 FDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDV 520
D ++P G+ +V P+ED + T L ++ GGR AE +VFG+ V
Sbjct: 438 ADVVHKVTIVPRGQAGGYAVMLPKEDRY---FMTKPELLDKITGLLGGRVAEEIVFGE-V 493
Query: 521 TDGGKDDLEKITKIAREMV 539
+ G +D ++ T IAR MV
Sbjct: 494 STGAHNDFQRATGIARRMV 512
>UNIPROTKB|P0C5C0 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006508 "proteolysis" evidence=IMP;IDA] [GO:0006979 "response
to oxidative stress" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IMP] [GO:0040007
"growth" evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0040007 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
EMBL:BX842583 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0010468
HOGENOM:HOG000217276 KO:K03798 PIR:C70956 RefSeq:NP_218127.1
RefSeq:NP_338259.1 RefSeq:YP_006517099.1 ProteinModelPortal:P0C5C0
SMR:P0C5C0 PRIDE:P0C5C0 EnsemblBacteria:EBMYCT00000001212
EnsemblBacteria:EBMYCT00000069111 GeneID:13317218 GeneID:885732
GeneID:926520 KEGG:mtc:MT3714 KEGG:mtu:Rv3610c KEGG:mtv:RVBD_3610c
PATRIC:18129921 TubercuList:Rv3610c OMA:RSEMIAR
ProtClustDB:CLSK792593 Uniprot:P0C5C0
Length = 760
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 138/389 (35%), Positives = 215/389 (55%)
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
K+ + +V + + L E+ ++ NP +Y G + +GVLL GPPGTGKTL AR +A
Sbjct: 159 KTTFADVAGVDEAVEELYEIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAG 218
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHAR 280
E+G+PF SG++F + GA+R+ ++F A++N+P +FVDEIDA+ AG
Sbjct: 219 EAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGG 278
Query: 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D R + T L+ ++DG +R G VI I ATNRPD LD +RPGR DR++
Sbjct: 279 HDEREQ-TLNQLLVEMDGFGDRAG---------VILIAATNRPDILDPALLRPGRFDRQI 328
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
+ PD R + VHS GK +A D + + L RTVG +GAD+ N++NE+ +++ R+
Sbjct: 329 PVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENG 388
Query: 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPR 460
+ I + + +D+ ++ G ++ + +S ++K++ A HE GH + A P
Sbjct: 389 TVITGPALEEAVDR-VIGG---------PRRKGRIISEQEKKITAYHEGGHTLAAWAMPD 438
Query: 461 FDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDV 520
+ +L G+ +V P ED +G T + Q+V A GGR AE LVF +
Sbjct: 439 IEPIYKVTILARGRTGGHAVAVPEED---KGLRTRSEMIAQLVFAMGGRAAEELVFREPT 495
Query: 521 TDGGKDDLEKITKIAREMVIS-PQNARLG 548
T G D+E+ TKIAR MV +++LG
Sbjct: 496 T-GAVSDIEQATKIARSMVTEFGMSSKLG 523
>TIGR_CMR|CBU_1352 [details] [associations]
symbol:CBU_1352 "ATP-dependent metalloprotease FtsH"
species:227377 "Coxiella burnetii RSA 493" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HSSP:P28691 HOGENOM:HOG000217276 KO:K03798
MEROPS:M41.001 OMA:RSIIDQC RefSeq:NP_820341.1
ProteinModelPortal:Q83BY5 SMR:Q83BY5 PRIDE:Q83BY5 GeneID:1209258
KEGG:cbu:CBU_1352 PATRIC:17931447 ProtClustDB:CLSK914722
BioCyc:CBUR227377:GJ7S-1342-MONOMER Uniprot:Q83BY5
Length = 647
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 157/512 (30%), Positives = 261/512 (50%)
Query: 39 PYTY--FLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPL-DPYLFETIASSGA 95
PY+Y F++ +++ +V++VV + + VT K+ + +P+ D L + + G
Sbjct: 34 PYSYSQFVQAVNNDKVSSVVI-QGHEIKGVT-KDN--KHFTTYLPMEDQALLNQLMAKGV 89
Query: 96 EVDLLQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAEN 155
V +Q FL +LI+ LP ++++ V +L + R + M++ +
Sbjct: 90 SVKGEPPKQQSMFLHILISWLPFLILIF-----VWILFM---RQMQGGGRGGGPMSFGRS 141
Query: 156 FILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGT 215
+ K + +V + + + EL+ ++ +P ++ G + GVLL GPPGT
Sbjct: 142 KARLLSQ-DQVKVTFDDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKMPCGVLLVGPPGT 200
Query: 216 GKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI 274
GKTL A+ +A E+ +PF SG++F + GA+R+ +MF A++ AP +F+DEIDA+
Sbjct: 201 GKTLLAKAVAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQAPCIIFIDEIDAV 260
Query: 275 AGRHARKD-----PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLE 329
GRH R T L+ ++DG F ++ +I + ATNRPD LD
Sbjct: 261 -GRHRGAGLGGGHDEREQTLNQLLVEMDG---------FEGKEGIIVMAATNRPDVLDPA 310
Query: 330 FVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVN 389
+RPGR DR++ + LPD K R I VH LA+DV + T GFSGAD+ N+VN
Sbjct: 311 LLRPGRFDRQVVVPLPDIKGREYILKVHMNKLPLAKDVKASVIARGTPGFSGADLANIVN 370
Query: 390 ESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEA 449
E+ + + R+ + + DK + MG ++ +S ++K+L A HEA
Sbjct: 371 EAALFAARENKKDVSMSEFERAKDKIM---MGA-------ERRSMVMSDDEKKLTAYHEA 420
Query: 450 GHIVLA-HLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGG 508
GH ++ H+ + + ++P G+ +++F P D T L+ Q+ GG
Sbjct: 421 GHAIVGLHMLEHDPVYKVT-IIPRGRALGVTMFLPEHDRYSM---TKRRLECQLAGLFGG 476
Query: 509 RCAERLVFGDD-VTDGGKDDLEKITKIAREMV 539
R AE ++FG D VT G +D+EK T+IAR MV
Sbjct: 477 RIAEEIIFGPDLVTTGASNDIEKATEIARNMV 508
>UNIPROTKB|Q2GIT4 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
Uniprot:Q2GIT4
Length = 611
Score = 514 (186.0 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 158/519 (30%), Positives = 258/519 (49%)
Query: 40 YTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPL-EYVVDIPL-DPYLFETIASSGAEV 97
Y +F +++ S+ ++ F+E L RL E + E+ + + F T G
Sbjct: 24 YAHFGDRIIGSKEVSIPFSEFLVRLEDGSVESVSITEHEISGKFHNGVKFRT---HGVVY 80
Query: 98 DLLQKRQIHYFLKVLIALLPGILILSLIRETVM----LLHITSSRLLYKKYNQLFD---M 150
D L K + KV+ + + +LS+I + +L + L+ K QL M
Sbjct: 81 DGLIKTM--HAQKVMFEFVSEVTLLSVIGSLFVSCLPMLSLVVIWCLFLKQMQLGGNRTM 138
Query: 151 AYAENFILPVGYVSDT--KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVL 208
++++ ++D+ K + +V + + L E++ ++ + ++ + G + +G L
Sbjct: 139 GFSKS---RARLMTDSRGKVTFDDVAGIEEAKEELIEIVDFLKHRQKFTKLGGKIPKGCL 195
Query: 209 LSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVF 267
L G PGTGKTL AR +A E+ +PF SG++F + GA+R+ +MF +++AP +F
Sbjct: 196 LIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKHAPCIIF 255
Query: 268 VDEIDAIAGRH-----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
VDEIDA+ GRH + R T L+ ++DG F + V+ I ATNR
Sbjct: 256 VDEIDAV-GRHRGIGLGGGNDEREQTLNQLLVEMDG---------FESNEGVVIIAATNR 305
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
PD LD +RPGR DR++ I +PD R +I VH+ LA DV+ + T GFSGA
Sbjct: 306 PDVLDPALLRPGRFDRQVTISIPDINGREKIIAVHAKKVPLAPDVDLRVIARGTPGFSGA 365
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKR 442
D+ NLVNE+ +++ R + D DK + MG E + + E++R
Sbjct: 366 DLANLVNEAALIAARLDKKIVTMCDFEYARDKVM---MGA---ERKSMVMRE----EERR 415
Query: 443 LLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQM 502
L A HEAGH V+A P D + ++P G+ + + P D + T + +
Sbjct: 416 LTAYHEAGHAVVAFHNPASDPIHKATIIPRGRSLGLVMRLPETDRVSH---TREKMLADL 472
Query: 503 VVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMVI 540
VA GGR AE L+FG + VT G D+++ T +A+ MV+
Sbjct: 473 TVAMGGRAAEELIFGYNKVTSGASSDIKQATDLAKSMVM 511
Score = 43 (20.2 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 38 LPYTYFLEKLDSSEVAAVVFTE 59
+P++ FL +L+ V +V TE
Sbjct: 39 IPFSEFLVRLEDGSVESVSITE 60
>TIGR_CMR|APH_1179 [details] [associations]
symbol:APH_1179 "ATP-dependent metalloprotease FtsH"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 GO:GO:0000910 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
Uniprot:Q2GIT4
Length = 611
Score = 514 (186.0 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 158/519 (30%), Positives = 258/519 (49%)
Query: 40 YTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPL-EYVVDIPL-DPYLFETIASSGAEV 97
Y +F +++ S+ ++ F+E L RL E + E+ + + F T G
Sbjct: 24 YAHFGDRIIGSKEVSIPFSEFLVRLEDGSVESVSITEHEISGKFHNGVKFRT---HGVVY 80
Query: 98 DLLQKRQIHYFLKVLIALLPGILILSLIRETVM----LLHITSSRLLYKKYNQLFD---M 150
D L K + KV+ + + +LS+I + +L + L+ K QL M
Sbjct: 81 DGLIKTM--HAQKVMFEFVSEVTLLSVIGSLFVSCLPMLSLVVIWCLFLKQMQLGGNRTM 138
Query: 151 AYAENFILPVGYVSDT--KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVL 208
++++ ++D+ K + +V + + L E++ ++ + ++ + G + +G L
Sbjct: 139 GFSKS---RARLMTDSRGKVTFDDVAGIEEAKEELIEIVDFLKHRQKFTKLGGKIPKGCL 195
Query: 209 LSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVF 267
L G PGTGKTL AR +A E+ +PF SG++F + GA+R+ +MF +++AP +F
Sbjct: 196 LIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKHAPCIIF 255
Query: 268 VDEIDAIAGRH-----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
VDEIDA+ GRH + R T L+ ++DG F + V+ I ATNR
Sbjct: 256 VDEIDAV-GRHRGIGLGGGNDEREQTLNQLLVEMDG---------FESNEGVVIIAATNR 305
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
PD LD +RPGR DR++ I +PD R +I VH+ LA DV+ + T GFSGA
Sbjct: 306 PDVLDPALLRPGRFDRQVTISIPDINGREKIIAVHAKKVPLAPDVDLRVIARGTPGFSGA 365
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKR 442
D+ NLVNE+ +++ R + D DK + MG E + + E++R
Sbjct: 366 DLANLVNEAALIAARLDKKIVTMCDFEYARDKVM---MGA---ERKSMVMRE----EERR 415
Query: 443 LLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQM 502
L A HEAGH V+A P D + ++P G+ + + P D + T + +
Sbjct: 416 LTAYHEAGHAVVAFHNPASDPIHKATIIPRGRSLGLVMRLPETDRVSH---TREKMLADL 472
Query: 503 VVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMVI 540
VA GGR AE L+FG + VT G D+++ T +A+ MV+
Sbjct: 473 TVAMGGRAAEELIFGYNKVTSGASSDIKQATDLAKSMVM 511
Score = 43 (20.2 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 38 LPYTYFLEKLDSSEVAAVVFTE 59
+P++ FL +L+ V +V TE
Sbjct: 39 IPFSEFLVRLEDGSVESVSITE 60
>POMBASE|SPCC965.04c [details] [associations]
symbol:SPCC965.04c "mitochondrial inner membrane i-AAA
protease complex subunit Yme1 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0004176 "ATP-dependent peptidase
activity" evidence=ISO] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISO] [GO:0007005
"mitochondrion organization" evidence=ISS] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0031942 "i-AAA complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC965.04c GO:GO:0016021 GO:GO:0005524 EMBL:CU329672
GO:GO:0046872 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 GO:GO:0004176
HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942 PIR:T41657
RefSeq:NP_588514.1 ProteinModelPortal:O59824 SMR:O59824
STRING:O59824 EnsemblFungi:SPCC965.04c.1 GeneID:2538746
KEGG:spo:SPCC965.04c KO:K08955 OMA:LANANMS OrthoDB:EOG4FR40W
NextBio:20799930 Uniprot:O59824
Length = 709
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 129/375 (34%), Positives = 207/375 (55%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L+E++ ++ +P + G + RGVLL+GPPGTGKT+ AR +A E+ +PF F SG++F +
Sbjct: 279 LEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDE 338
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAG-RHARKDPRRRATFEALIAQLDGDK 300
GA R+ E+F+ AR+ AP+ +F+DE+DAI R+AR R T L+ LDG
Sbjct: 339 MYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFS 398
Query: 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360
+ L V+FI ATN P+ LD RPGR DR +++ LPD + R+ I H+
Sbjct: 399 KNE-----DLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRH 453
Query: 361 KQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGM 420
L +DV+ + T GF+GAD+ NL+N++ + + + + + +D+ D+ L M
Sbjct: 454 VPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLEWSKDRIL---M 510
Query: 421 GVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAF-SQLLPGGKETAIS 479
G ++ ++ E K + A HE GH ++A LF + + + ++P G ++
Sbjct: 511 GA-------ERKSAFITPENKLMTAYHEGGHALVA-LFTKNAMRPYKATIMPRGSSLGMT 562
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
+ P D +T YL M + V GGR AE L++G D +T G +D++K T++AR M
Sbjct: 563 ISLPDMDK--DSWTREEYLAM-LDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRM 619
Query: 539 VIS-PQNARLGLAGL 552
V + R+G L
Sbjct: 620 VTEFGMSDRIGPVSL 634
>ASPGD|ASPL0000029469 [details] [associations]
symbol:AN5588 species:162425 "Emericella nidulans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=IEA] [GO:0031942 "i-AAA
complex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
GO:GO:0004222 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01241 OMA:SEFDEVY EnsemblFungi:CADANIAT00003489
Uniprot:C8VG17
Length = 784
Score = 539 (194.8 bits), Expect = 9.0e-52, P = 9.0e-52
Identities = 131/363 (36%), Positives = 198/363 (54%)
Query: 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240
D L EL+ ++ NP ++ G + +GVLL GPPGTGKTL AR +A E+G+PF + SG+EF
Sbjct: 325 DELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEF 384
Query: 241 TDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR-RATFEALIAQLDG 298
+ GA R+ E+F+ AR +PA +F+DE+DAI + +D + T L+ +LDG
Sbjct: 385 DEVYVGVGAKRVRELFNQARSKSPAIIFIDELDAIGAKRNERDAAYVKQTLNQLLTELDG 444
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
+ TG VI + ATN P+ LD RPGR DR++ + LPD + R+ I H
Sbjct: 445 FSQSTG---------VIILAATNYPELLDKALTRPGRFDRKVVVDLPDVRGRMDILKHHM 495
Query: 359 AGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLE 418
Q++ DV+ + T GFSGAD+ NLVN++ I + R SK+ +D DK
Sbjct: 496 KNVQISTDVDVAVIARGTSGFSGADLENLVNQAAIFASRNKQSKVTPKDFDYAKDK---- 551
Query: 419 GMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPR-FDWHAFSQLLPGGKETA 477
+++ E + + Q + K L A HEAGH ++A+ P + + ++P G
Sbjct: 552 ---IIMGAEARSRIIQD---KDKLLTAYHEAGHALVAYFSPSSMPLYKIT-IMPRGMSLG 604
Query: 478 ISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAR 536
+ F P D + + Y YL + V+ GG+ AE L++G+D VT G DL T+ A
Sbjct: 605 STHFLPEMDMVSKNYVQ--YLS-DIDVSMGGKVAEELIYGEDKVTSGISADLASATRTAF 661
Query: 537 EMV 539
+V
Sbjct: 662 TLV 664
>TIGR_CMR|NSE_0423 [details] [associations]
symbol:NSE_0423 "ATP-dependent metalloprotease FtsH"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001 RefSeq:YP_506309.1
ProteinModelPortal:Q2GDY7 SMR:Q2GDY7 STRING:Q2GDY7 GeneID:3931660
KEGG:nse:NSE_0423 PATRIC:22680905 OMA:ENIESLH
ProtClustDB:CLSK749654 BioCyc:NSEN222891:GHFU-445-MONOMER
Uniprot:Q2GDY7
Length = 636
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 159/508 (31%), Positives = 255/508 (50%)
Query: 45 EKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAE-VDLLQKR 103
EK+ SE +V +++++ + EG+ + V+ F T A+ E + LL+K
Sbjct: 36 EKIQFSEFLDLVEKGEVQKIVI---EGYDISGVLKSGTH---FYTKATQYTELIPLLRKN 89
Query: 104 QIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFD---MAYAENFILPV 160
+ + + + L G+L LI MLL I + + K Q M + ++
Sbjct: 90 NVDFQVASGDSFL-GLLFNILISWFPMLLLI-GVWIFFMKQMQAGGNKTMTFGKS---KA 144
Query: 161 GYVSD--TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKT 218
+SD K + +V + + L E++ ++ P ++ + G + +G LL GPPGTGKT
Sbjct: 145 RLLSDRSNKVTFHDVAGIDEAKEELAEIVEFLREPKKFQKLGGKIPKGCLLIGPPGTGKT 204
Query: 219 LFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGR 277
L A+ +A E+ +PF SG++F + GA+R+ +MF ++NAP +F+DEIDA+ GR
Sbjct: 205 LLAKAIAGEAKVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDAV-GR 263
Query: 278 H-----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332
H + R T L+ ++DG F + VI I ATNRPD LD +R
Sbjct: 264 HRGVGFGGGNDEREQTLNQLLVEMDG---------FEANEGVIIIAATNRPDVLDPALLR 314
Query: 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESG 392
PGR DR++ I +PD R +I +VH A +V + T GFSGAD+ NLVNES
Sbjct: 315 PGRFDRQITISIPDIAGRQKILEVHLKKIPTAPNVEVSIIARGTPGFSGADLANLVNESA 374
Query: 393 IMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHI 452
+++ R+ + +D DK +L GM E + + E+K L A HEAGH
Sbjct: 375 LIAARRNKKVVTNEDFEYARDK-ILMGM-----ERKSLVMRE----EEKLLTAYHEAGHA 424
Query: 453 VLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAE 512
+ + D + ++P G+ + + P D + T + ++VA GGR AE
Sbjct: 425 ITSLKLEASDPIHKATIIPRGRALGLVMRLPEHDRVS---FTRAKMHADLIVAMGGRAAE 481
Query: 513 RLVFGDD-VTDGGKDDLEKITKIAREMV 539
+++FGDD T G D+++ T +AR MV
Sbjct: 482 QVIFGDDKTTSGAASDIKQATHLARSMV 509
>DICTYBASE|DDB_G0284249 [details] [associations]
symbol:DDB_G0284249 "peptidase M41, FtsH
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006461 "protein complex assembly" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0044351 "macropinocytosis" evidence=RCA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0284249 GO:GO:0016021 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0006461 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:AAFI02000064 RefSeq:XP_638674.1 ProteinModelPortal:Q54PX1
SMR:Q54PX1 MEROPS:M41.A17 EnsemblProtists:DDB0229917 GeneID:8624503
KEGG:ddi:DDB_G0284249 InParanoid:Q54PX1 OMA:VSIYGMN
ProtClustDB:CLSZ2846729 Uniprot:Q54PX1
Length = 764
Score = 536 (193.7 bits), Expect = 1.3e-51, P = 1.3e-51
Identities = 160/528 (30%), Positives = 266/528 (50%)
Query: 37 KLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPL-DPYLFETIASSGA 95
++ ++ FL++L ++ + +V T+ Y +G + D +FE
Sbjct: 172 EIKFSEFLDELSENKPSKIVVTDGYANTYKLNDDGVTYSITNSFKIGDKKVFEEQVEK-V 230
Query: 96 EVDL-LQKRQIHYFLKVLIALL--PGILILSLIRETVM-LLHITSSRLLYKKYNQLFDM- 150
+ DL + K Q F+ + P + ++ +I ++ L + R + K N++F
Sbjct: 231 QSDLGIPKSQ---FIPISYHEYFDPRVALIQVIPYAIIGYLIFRTFRSI--KSNKMFSQG 285
Query: 151 -AYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLL 209
+ A F V + +V G+ ++E + ++ NP ++++ G + RG +L
Sbjct: 286 KSTANKFEKSTSTVK-----FSDVAGLGEAKVEIEEFVNFLKNPKKFHDIGAKIPRGAIL 340
Query: 210 SGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFV 268
GPPGTGKTL A+ A E+ +PF SG++F + G +R+ ++F AR+NAP VF+
Sbjct: 341 VGPPGTGKTLIAKATAGEANVPFYSTSGSDFVEMFVGVGPSRVRDLFEQARKNAPCIVFI 400
Query: 269 DEIDAIA-----GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323
DEIDA+ G + + R T L+ ++DG K L+ V+ + ATNRP
Sbjct: 401 DEIDAVGRARGKGGFSGSNDERENTLNQLLVEMDGFKP--------LKNVVV-LAATNRP 451
Query: 324 DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFR-TVGFSGA 382
D LD +RPGR DR++ I PD K R +IF VH A L + +N+ E + + T GFSGA
Sbjct: 452 DILDKALLRPGRFDRQITIDNPDLKSREEIFRVHLAALLLDKSINYAERLSKLTPGFSGA 511
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKR 442
DI N+ NE+ +++ R+ H++I + D +++ G+ E++ K +S +KR
Sbjct: 512 DIANVCNEAALIAARR-HAEIITLEHFDAAVDRVIGGL------EKKNKV---LSPTEKR 561
Query: 443 LLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET-AISVFYPREDTIDQGYTTFGYLKMQ 501
+A HEAGH V++ ++P G + + P+E + F
Sbjct: 562 TVAYHEAGHAVVSWFLKHCHPLLKVSIVPRGVAALGYAQYLPKEQFLQNQEQIFD----M 617
Query: 502 MVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV-ISPQNARLG 548
M +A GGR AE+L FG +T G +DDLEKITK+A V I N ++G
Sbjct: 618 MCMALGGRVAEQLTFGT-ITTGAQDDLEKITKMAYSQVSIYGMNEKIG 664
>UNIPROTKB|Q9KU86 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241 HSSP:P28691
KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299 RefSeq:NP_230286.1
ProteinModelPortal:Q9KU86 SMR:Q9KU86 DNASU:2615425 GeneID:2615425
KEGG:vch:VC0637 PATRIC:20080383 ProtClustDB:CLSK874054
Uniprot:Q9KU86
Length = 651
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 131/381 (34%), Positives = 207/381 (54%)
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
K+ + +V + + + EL+ Y+ +P ++ + G + GVL+ GPPGTGKTL A+ +A
Sbjct: 152 KTTFSDVAGCDEAKEDVKELVDYLRDPSRFQKLGGKIPTGVLMVGPPGTGKTLLAKAIAG 211
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHAR 280
E+ +PF SG++F + GA+R+ +MF A++ +P +F+DEIDA+ AG
Sbjct: 212 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGG 271
Query: 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D R + T ++ ++DG F + +I I ATNRPD LD +RPGR DR++
Sbjct: 272 HDEREQ-TLNQMLVEMDG---------FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 321
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFR-TVGFSGADIRNLVNESGIMSVRKG 399
+GLPD + R QI VH LA DV L+ R T GFSGAD+ NLVNE+ + + R
Sbjct: 322 VVGLPDVRGREQILKVHMRKVPLANDVE-PSLIARGTPGFSGADLANLVNEAALFAARGN 380
Query: 400 HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFP 459
+ + DK + MG ++ +S E K A HEAGH V+ L P
Sbjct: 381 KRNVSMVEFELAKDKIM---MGA-------ERRSMVMSEEIKESTAYHEAGHAVVGRLVP 430
Query: 460 RFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD 519
D ++P G+ ++++ P +D + +L+ + +GGR AE L++G +
Sbjct: 431 EHDPVYKVSIIPRGRALGVTMYLPEQDRVSMSKQ---HLESMISSLYGGRLAEELIYGKE 487
Query: 520 -VTDGGKDDLEKITKIAREMV 539
V+ G +D+E+ T+IAR+MV
Sbjct: 488 KVSTGASNDIERATEIARKMV 508
>TIGR_CMR|VC_0637 [details] [associations]
symbol:VC_0637 "cell division protein FtsH" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000910 "cytokinesis"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299
RefSeq:NP_230286.1 ProteinModelPortal:Q9KU86 SMR:Q9KU86
DNASU:2615425 GeneID:2615425 KEGG:vch:VC0637 PATRIC:20080383
ProtClustDB:CLSK874054 Uniprot:Q9KU86
Length = 651
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 131/381 (34%), Positives = 207/381 (54%)
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
K+ + +V + + + EL+ Y+ +P ++ + G + GVL+ GPPGTGKTL A+ +A
Sbjct: 152 KTTFSDVAGCDEAKEDVKELVDYLRDPSRFQKLGGKIPTGVLMVGPPGTGKTLLAKAIAG 211
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHAR 280
E+ +PF SG++F + GA+R+ +MF A++ +P +F+DEIDA+ AG
Sbjct: 212 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGG 271
Query: 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D R + T ++ ++DG F + +I I ATNRPD LD +RPGR DR++
Sbjct: 272 HDEREQ-TLNQMLVEMDG---------FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 321
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFR-TVGFSGADIRNLVNESGIMSVRKG 399
+GLPD + R QI VH LA DV L+ R T GFSGAD+ NLVNE+ + + R
Sbjct: 322 VVGLPDVRGREQILKVHMRKVPLANDVE-PSLIARGTPGFSGADLANLVNEAALFAARGN 380
Query: 400 HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFP 459
+ + DK + MG ++ +S E K A HEAGH V+ L P
Sbjct: 381 KRNVSMVEFELAKDKIM---MGA-------ERRSMVMSEEIKESTAYHEAGHAVVGRLVP 430
Query: 460 RFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD 519
D ++P G+ ++++ P +D + +L+ + +GGR AE L++G +
Sbjct: 431 EHDPVYKVSIIPRGRALGVTMYLPEQDRVSMSKQ---HLESMISSLYGGRLAEELIYGKE 487
Query: 520 -VTDGGKDDLEKITKIAREMV 539
V+ G +D+E+ T+IAR+MV
Sbjct: 488 KVSTGASNDIERATEIARKMV 508
>ZFIN|ZDB-GENE-070912-46 [details] [associations]
symbol:afg3l2 "AFG3 ATPase family gene 3-like 2 (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-070912-46 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:10939 MEROPS:M41.007 EMBL:BX000484 EMBL:BC155655
IPI:IPI00513225 RefSeq:NP_001104667.1 UniGene:Dr.82691 SMR:A9JRG9
STRING:A9JRG9 Ensembl:ENSDART00000089834 GeneID:569168
KEGG:dre:569168 NextBio:20889547 Uniprot:A9JRG9
Length = 800
Score = 531 (192.0 bits), Expect = 9.5e-51, P = 9.5e-51
Identities = 140/439 (31%), Positives = 232/439 (52%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +PF+ +G+EF +
Sbjct: 317 EFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMF 376
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT 303
G AR+ ++F +AR+NAP +F+DEIDA+ + R + ++ E + QL
Sbjct: 377 VGVGPARVRDLFVLARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQL-----LV 431
Query: 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL 363
+D F+ V+ + TNRPD LD +RPGR DR++YIG PD K R IF VH +L
Sbjct: 432 EMDGFNTATNVVVLAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKL 491
Query: 364 AEDVNFEELVFR----TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+++ E L + T GFSGADI N+ NE+ +++ R I Q+ +++ ++ G
Sbjct: 492 EAELDKEALARKMAALTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQAIER-VIGG 550
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
+ +K Q + E+K+ +A HEAGH V D ++P GK +
Sbjct: 551 L---------EKKTQVLQPEEKKTVAYHEAGHAVAGWFLEHADPLLKVSIIPRGKGLGYA 601
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV 539
+ P+E + YT L +M + GGR +E + FG +T G +DDL+K+T+ A +
Sbjct: 602 QYLPKEQYL---YTKEQLLD-RMCMTLGGRVSEEIFFGR-ITTGAQDDLKKVTQSAYAQI 656
Query: 540 IS-PQNARLGLAG--LTRRVGL-LDRP---------DSSDGDLIKYRWDDPQVIPTDMTL 586
+ N ++G L R+ L L++P D+ +LI ++ Q + +D
Sbjct: 657 VQFGMNEKVGQVSFDLPRQGELVLEKPYSEATARLIDTEVRNLISTAYERTQQLLSDKKP 716
Query: 587 ELSELFTRELTRVIIKKKN 605
E+ ++ R L + ++ K +
Sbjct: 717 EVEKVALRLLEKEVLDKND 735
>UNIPROTKB|P0AAI3 [details] [associations]
symbol:ftsH species:83333 "Escherichia coli K-12"
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006508
"proteolysis" evidence=IEA;IDA] [GO:0043273 "CTPase activity"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA;IDA]
[GO:0030145 "manganese ion binding" evidence=IDA] [GO:0016021
"integral to membrane" evidence=IEA;IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0008270 GO:GO:0006508 EMBL:U18997
GO:GO:0004222 GO:GO:0016887 GO:GO:0030145 GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0043273 EMBL:U01376
HOGENOM:HOG000217276 KO:K03798 EMBL:M83138 PIR:S35109
RefSeq:NP_417645.1 RefSeq:YP_491363.1 PDB:1LV7 PDBsum:1LV7
ProteinModelPortal:P0AAI3 SMR:P0AAI3 DIP:DIP-35828N IntAct:P0AAI3
MINT:MINT-1226643 MEROPS:M41.001 PaxDb:P0AAI3 PRIDE:P0AAI3
EnsemblBacteria:EBESCT00000000369 EnsemblBacteria:EBESCT00000000370
EnsemblBacteria:EBESCT00000017485 GeneID:12933986 GeneID:947690
KEGG:ecj:Y75_p3098 KEGG:eco:b3178 PATRIC:32121774 EchoBASE:EB1469
EcoGene:EG11506 OMA:RSIIDQC ProtClustDB:PRK10733
BioCyc:EcoCyc:EG11506-MONOMER BioCyc:ECOL316407:JW3145-MONOMER
BioCyc:MetaCyc:EG11506-MONOMER SABIO-RK:P0AAI3
EvolutionaryTrace:P0AAI3 Genevestigator:P0AAI3 Uniprot:P0AAI3
Length = 644
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 127/383 (33%), Positives = 205/383 (53%)
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
K+ + +V + + + EL+ Y+ P ++ + G + +GVL+ GPPGTGKTL A+ +A
Sbjct: 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHAR 280
E+ +PF SG++F + GA+R+ +MF A++ AP +F+DEIDA+ AG
Sbjct: 208 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 267
Query: 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D R + T ++ ++DG F + +I I ATNRPD LD +RPGR DR++
Sbjct: 268 HDEREQ-TLNQMLVEMDG---------FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 317
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
+GLPD + R QI VH LA D++ + T GFSGAD+ NLVNE+ + + R
Sbjct: 318 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK 377
Query: 401 SKIQQQDIVDVLDKQLL--EGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLF 458
+ + DK ++ E +++TE +++ A HEAGH ++ L
Sbjct: 378 RVVSMVEFEKAKDKIMMGAERRSMVMTEAQKEST------------AYHEAGHAIIGRLV 425
Query: 459 PRFD-WHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG 517
P D H + ++P G+ ++ F P D I L+ Q+ +GGR AE +++G
Sbjct: 426 PEHDPVHKVT-IIPRGRALGVTFFLPEGDAISASRQK---LESQISTLYGGRLAEEIIYG 481
Query: 518 DD-VTDGGKDDLEKITKIAREMV 539
+ V+ G +D++ T +AR MV
Sbjct: 482 PEHVSTGASNDIKVATNLARNMV 504
>UNIPROTKB|F1N9N5 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
OMA:LYRFVTT EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00683486 Ensembl:ENSGALT00000016639 ArrayExpress:F1N9N5
Uniprot:F1N9N5
Length = 635
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 139/439 (31%), Positives = 227/439 (51%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +PF+ +G+EF +
Sbjct: 166 EFVNFLKNPKQYEDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMF 225
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT 303
G AR+ ++F++AR+NAP +F+DEIDA+ + R + ++ E + QL
Sbjct: 226 VGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQL-----LV 280
Query: 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH----SA 359
+D F+ V+ + TNRPD LD +RPGR DR++YIG PD K R IF VH
Sbjct: 281 EMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKL 340
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
L +D +L T GFSGADI N+ NE+ +++ R I Q+ +++ ++ G
Sbjct: 341 DTVLDKDNLARKLASLTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQAIER-VIGG 399
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
+ +K Q + E+K+ +A HEAGH V D ++P GK +
Sbjct: 400 L---------EKKTQVLQPEEKKTVAYHEAGHAVAGWFLEHADPLLKVSIIPRGKGLGYA 450
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV 539
+ P+E + YT L +M + GGR +E++ FG +T G +DDL+K+T+ A +
Sbjct: 451 QYLPKEQYL---YTKEQLLD-RMCMTLGGRVSEQIFFGR-ITTGAQDDLKKVTQSAYAQI 505
Query: 540 IS-PQNARLGLAGLTR-RVG--LLDRP---------DSSDGDLIKYRWDDPQVIPTDMTL 586
+ N ++G R G +L++P D LI +D + T+
Sbjct: 506 VQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARMIDEEVRSLINIAYDRTLSLLTEKKA 565
Query: 587 ELSELFTRELTRVIIKKKN 605
E+ ++ R L + ++ K +
Sbjct: 566 EVEKVALRLLEKEVLDKSD 584
>UNIPROTKB|Q2KJI7 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9913 "Bos
taurus" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0046872 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 MEROPS:M41.016
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:BC105322 IPI:IPI00686580 RefSeq:NP_001039676.1 UniGene:Bt.1657
HSSP:Q9WZ49 ProteinModelPortal:Q2KJI7 SMR:Q2KJI7 STRING:Q2KJI7
PRIDE:Q2KJI7 Ensembl:ENSBTAT00000031029 GeneID:515757
KEGG:bta:515757 CTD:10939 InParanoid:Q2KJI7 OMA:LYRFVTT
NextBio:20871990 GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
Uniprot:Q2KJI7
Length = 805
Score = 527 (190.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 142/444 (31%), Positives = 232/444 (52%)
Query: 112 LIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYK 171
L+++LP +LI++ + T+ R + LF + +L D K +K
Sbjct: 255 LLSMLPTVLIIAFLLYTIRRGPAGIGRT-GRGMGGLFSVGETTAKVLKDEI--DVK--FK 309
Query: 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230
+V G + L + E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +
Sbjct: 310 DVA-GCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANV 368
Query: 231 PFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF 289
PF+ SG+EF + G AR+ ++F++AR+NAP +F+DEIDA+ + R + ++
Sbjct: 369 PFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQ 428
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
E + QL +D F+ V+ + TNRPD LD +RPGR DR+++IG PD K
Sbjct: 429 ENTLNQL-----LVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKG 483
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFR----TVGFSGADIRNLVNESGIMSVRKGHSKIQQ 405
R IF VH +L + E+L + T GFSGAD+ N+ NE+ +++ R I Q
Sbjct: 484 RASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQ 543
Query: 406 QDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHA 465
+ +++ ++ G+ +K Q + E+K+ +A HEAGH V D
Sbjct: 544 KHFEQAIER-VIGGL---------EKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLL 593
Query: 466 FSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGK 525
++P GK + + PRE + YT L +M + GGR +E + FG +T G +
Sbjct: 594 KVSIIPRGKGLGYAQYLPREQYL---YTREQLLD-RMCMTLGGRVSEEIFFGR-ITTGAQ 648
Query: 526 DDLEKITKIAREMVIS-PQNARLG 548
DDL K+T+ A ++ N ++G
Sbjct: 649 DDLRKVTQSAYAQIVQFGMNEKVG 672
>UNIPROTKB|Q2GFA1 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST
MEROPS:M41.001 ProtClustDB:CLSK749654 RefSeq:YP_507882.1
ProteinModelPortal:Q2GFA1 SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708
KEGG:ech:ECH_1098 PATRIC:20577534
BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
Length = 610
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 128/367 (34%), Positives = 194/367 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ + ++ + G + +G LL G PGTGKTL AR +A E+ +PF SG++F +
Sbjct: 168 LIEIVDFLKHRQRFQKLGGKIPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVE 227
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH-----ARKDPRRRATFEALIAQL 296
GA+R+ +MF ++NAP +F+DEIDA+ GRH + R T L+ ++
Sbjct: 228 MFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV-GRHRGIGLGGGNDEREQTLNQLLVEM 286
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG F + VI I ATNRPD LD +RPGR DR++ I +PD R +I +V
Sbjct: 287 DG---------FESNEGVIIIAATNRPDVLDSALLRPGRFDRQVTISIPDINGREKIINV 337
Query: 357 HSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
H A DVN + T GFSGAD+ NLVNE+ +++ R + D DK +
Sbjct: 338 HIKKVPTAPDVNIRTIARGTPGFSGADLANLVNEAALIAARLNKKIVTMSDFEYARDKVM 397
Query: 417 L--EGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGK 474
+ E +++TEEE +RL A HEAGH ++A D + ++P G+
Sbjct: 398 MGAERKSLMMTEEE------------RRLTAYHEAGHAIIAFFTEASDPIHKATIIPRGR 445
Query: 475 ETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITK 533
+ + P D + T + + VA GGR AE L+FG VT G D+++ T
Sbjct: 446 SLGLVMRLPESDRVSH---TREKMIADLTVAMGGRAAEELIFGYHKVTSGASSDIKQATD 502
Query: 534 IAREMVI 540
+A+ MV+
Sbjct: 503 LAKAMVM 509
Score = 242 (90.2 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 73/276 (26%), Positives = 136/276 (49%)
Query: 37 KLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAE 96
KLP++ FL K+D++EV ++ E + +K+G + I D L +T+ +
Sbjct: 36 KLPFSEFLNKIDNNEVESINIGEH--NITGKLKDGSKFQTTA-IVYDS-LIKTLHNQQVT 91
Query: 97 VDLLQKRQIHYFLK-VLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAEN 155
L + L +L++ P +L++ + + + I +R + +++ EN
Sbjct: 92 FTFLPEDTFFGVLSNILVSWFPMLLLVIIWFIFLKRMQIGGNRTI--NFSKSRAKLMTEN 149
Query: 156 FILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGT 215
K + +V + + L E++ ++ + ++ + G + +G LL G PGT
Sbjct: 150 ---------RNKVTFNDVAGIDEAKEELIEIVDFLKHRQRFQKLGGKIPKGCLLIGSPGT 200
Query: 216 GKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI 274
GKTL AR +A E+ +PF SG++F + GA+R+ +MF ++NAP +F+DEIDA+
Sbjct: 201 GKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 260
Query: 275 AGRH-----ARKDPRRRATFEALIAQLDGDKERTGI 305
GRH + R T L+ ++DG + G+
Sbjct: 261 -GRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGV 295
Score = 38 (18.4 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 372 LVFRTVGFSGADIRNLVN 389
L F T+ +G DI+N++N
Sbjct: 572 LEFETL--TGEDIKNIIN 587
>TIGR_CMR|ECH_1098 [details] [associations]
symbol:ECH_1098 "ATP-dependent metalloprotease FtsH"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 GO:GO:0000910
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_507882.1 ProteinModelPortal:Q2GFA1
SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708 KEGG:ech:ECH_1098
PATRIC:20577534 BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
Length = 610
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 128/367 (34%), Positives = 194/367 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ + ++ + G + +G LL G PGTGKTL AR +A E+ +PF SG++F +
Sbjct: 168 LIEIVDFLKHRQRFQKLGGKIPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVE 227
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH-----ARKDPRRRATFEALIAQL 296
GA+R+ +MF ++NAP +F+DEIDA+ GRH + R T L+ ++
Sbjct: 228 MFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV-GRHRGIGLGGGNDEREQTLNQLLVEM 286
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG F + VI I ATNRPD LD +RPGR DR++ I +PD R +I +V
Sbjct: 287 DG---------FESNEGVIIIAATNRPDVLDSALLRPGRFDRQVTISIPDINGREKIINV 337
Query: 357 HSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
H A DVN + T GFSGAD+ NLVNE+ +++ R + D DK +
Sbjct: 338 HIKKVPTAPDVNIRTIARGTPGFSGADLANLVNEAALIAARLNKKIVTMSDFEYARDKVM 397
Query: 417 L--EGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGK 474
+ E +++TEEE +RL A HEAGH ++A D + ++P G+
Sbjct: 398 MGAERKSLMMTEEE------------RRLTAYHEAGHAIIAFFTEASDPIHKATIIPRGR 445
Query: 475 ETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITK 533
+ + P D + T + + VA GGR AE L+FG VT G D+++ T
Sbjct: 446 SLGLVMRLPESDRVSH---TREKMIADLTVAMGGRAAEELIFGYHKVTSGASSDIKQATD 502
Query: 534 IAREMVI 540
+A+ MV+
Sbjct: 503 LAKAMVM 509
Score = 242 (90.2 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 73/276 (26%), Positives = 136/276 (49%)
Query: 37 KLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAE 96
KLP++ FL K+D++EV ++ E + +K+G + I D L +T+ +
Sbjct: 36 KLPFSEFLNKIDNNEVESINIGEH--NITGKLKDGSKFQTTA-IVYDS-LIKTLHNQQVT 91
Query: 97 VDLLQKRQIHYFLK-VLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAEN 155
L + L +L++ P +L++ + + + I +R + +++ EN
Sbjct: 92 FTFLPEDTFFGVLSNILVSWFPMLLLVIIWFIFLKRMQIGGNRTI--NFSKSRAKLMTEN 149
Query: 156 FILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGT 215
K + +V + + L E++ ++ + ++ + G + +G LL G PGT
Sbjct: 150 ---------RNKVTFNDVAGIDEAKEELIEIVDFLKHRQRFQKLGGKIPKGCLLIGSPGT 200
Query: 216 GKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAI 274
GKTL AR +A E+ +PF SG++F + GA+R+ +MF ++NAP +F+DEIDA+
Sbjct: 201 GKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 260
Query: 275 AGRH-----ARKDPRRRATFEALIAQLDGDKERTGI 305
GRH + R T L+ ++DG + G+
Sbjct: 261 -GRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGV 295
Score = 38 (18.4 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 372 LVFRTVGFSGADIRNLVN 389
L F T+ +G DI+N++N
Sbjct: 572 LEFETL--TGEDIKNIIN 587
>TAIR|locus:2057386 [details] [associations]
symbol:ftsh4 "FTSH protease 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=ISS] [GO:0016020
"membrane" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0009536 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
GO:GO:0005743 GO:GO:0046872 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
EMBL:AC004747 GO:GO:0004176 HOGENOM:HOG000217276 EMBL:AK220842
IPI:IPI00534293 PIR:T02610 RefSeq:NP_565616.1 UniGene:At.23415
ProteinModelPortal:O80983 SMR:O80983 STRING:O80983 MEROPS:M41.004
PaxDb:O80983 PRIDE:O80983 EnsemblPlants:AT2G26140.1 GeneID:817154
KEGG:ath:AT2G26140 GeneFarm:2508 TAIR:At2g26140 InParanoid:O80983
OMA:HTEGALP PhylomeDB:O80983 ProtClustDB:CLSN2688437
Genevestigator:O80983 Uniprot:O80983
Length = 717
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 129/363 (35%), Positives = 197/363 (54%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L+E++ Y+ +P ++ G + +GVLL GPPGTGKT+ AR +A E+G+PF SG+EF +
Sbjct: 239 LEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 298
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDK 300
GA R+ ++FS A++ +P +F+DEIDAI G KD + + T ++ +LDG K
Sbjct: 299 MFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQMLVELDGFK 358
Query: 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360
+ GI I + ATN P+ LD VRPGR DR + + PD + R QI + H +
Sbjct: 359 QNEGI---------IVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSK 409
Query: 361 KQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGM 420
AEDV+ + T GFSGAD+ NLVN + + + G + D+ D+
Sbjct: 410 VLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFAKDR------ 463
Query: 421 GVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLA-HLFPRFDWHAFSQLLPGGKETAIS 479
+++ E + +S E ++L A HE GH ++A H H + ++P G +
Sbjct: 464 -IMMGSERKSAV---ISDESRKLTAFHEGGHALVAIHTEGALPVHK-ATIVPRGMALGMV 518
Query: 480 VFYPREDTIDQGYTTFGYLKM--QMVVAHGGRCAERLVFGD-DVTDGGKDDLEKITKIAR 536
P +D T+ +M ++ V GGR AE L+FG+ +VT G DLE+ TK+AR
Sbjct: 519 SQLPDKDE-----TSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQATKLAR 573
Query: 537 EMV 539
MV
Sbjct: 574 AMV 576
>UNIPROTKB|E1BZ74 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0016265 "death" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0042407 "cristae formation" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0060013 "righting
reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0008270 GO:GO:0006508
GO:GO:0040014 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 GO:GO:0016265
GO:GO:0060013 EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00603273 Ensembl:ENSGALT00000022474 ArrayExpress:E1BZ74
Uniprot:E1BZ74
Length = 805
Score = 524 (189.5 bits), Expect = 6.2e-50, P = 6.2e-50
Identities = 139/439 (31%), Positives = 227/439 (51%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +PF+ +G+EF +
Sbjct: 322 EFVNFLKNPKQYEDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMF 381
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT 303
G AR+ ++F++AR+NAP +F+DEIDA+ + R + ++ E + QL
Sbjct: 382 VGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQL-----LV 436
Query: 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH----SA 359
+D F+ V+ + TNRPD LD +RPGR DR++YIG PD K R IF VH
Sbjct: 437 EMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKL 496
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
L +D +L T GFSGADI N+ NE+ +++ R I Q+ +++ ++ G
Sbjct: 497 DTVLDKDNLARKLASLTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQAIER-VIGG 555
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
+ +K Q + E+K+ +A HEAGH V D ++P GK +
Sbjct: 556 L---------EKKTQVLQPEEKKTVAYHEAGHAVAGWFLEHADPLLKVSIIPRGKGLGYA 606
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV 539
+ P+E + YT L +M + GGR +E++ FG +T G +DDL+K+T+ A +
Sbjct: 607 QYLPKEQYL---YTKEQLLD-RMCMTLGGRVSEQIFFGR-ITTGAQDDLKKVTQSAYAQI 661
Query: 540 IS-PQNARLGLAGLTR-RVG--LLDRP---------DSSDGDLIKYRWDDPQVIPTDMTL 586
+ N ++G R G +L++P D LI +D + T+
Sbjct: 662 VQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARMIDEEVRSLINIAYDRTLSLLTEKKA 721
Query: 587 ELSELFTRELTRVIIKKKN 605
E+ ++ R L + ++ K +
Sbjct: 722 EVEKVALRLLEKEVLDKSD 740
>UNIPROTKB|Q9Y4W6 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9606 "Homo
sapiens" [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0007528
"neuromuscular junction development" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0021675 "nerve
development" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051082 "unfolded protein binding" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0008219 DrugBank:DB00171 GO:GO:0007528 GO:GO:0051082
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 eggNOG:COG0465
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 GO:GO:0021675 GO:GO:0060013 EMBL:Y18314 EMBL:BC065016
IPI:IPI00001091 RefSeq:NP_006787.2 UniGene:Hs.726355 PDB:2LNA
PDBsum:2LNA ProteinModelPortal:Q9Y4W6 SMR:Q9Y4W6 IntAct:Q9Y4W6
MINT:MINT-1161944 STRING:Q9Y4W6 MEROPS:M41.007 PhosphoSite:Q9Y4W6
DMDM:126302516 PaxDb:Q9Y4W6 PeptideAtlas:Q9Y4W6 PRIDE:Q9Y4W6
Ensembl:ENST00000269143 GeneID:10939 KEGG:hsa:10939 UCSC:uc002kqz.2
GeneCards:GC18M012328 H-InvDB:HIX0027367 HGNC:HGNC:315
HPA:HPA004479 HPA:HPA004480 MIM:604581 MIM:610246 MIM:614487
neXtProt:NX_Q9Y4W6 Orphanet:101109 PharmGKB:PA24612
InParanoid:Q9Y4W6 PhylomeDB:Q9Y4W6 GenomeRNAi:10939 NextBio:41551
ArrayExpress:Q9Y4W6 Bgee:Q9Y4W6 CleanEx:HS_AFG3L2
Genevestigator:Q9Y4W6 GermOnline:ENSG00000141385 Uniprot:Q9Y4W6
Length = 797
Score = 523 (189.2 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 141/444 (31%), Positives = 230/444 (51%)
Query: 112 LIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYK 171
L+++LP +LI++ + T+ R + LF + +L D K +K
Sbjct: 254 LLSMLPTVLIIAFLLYTIRRGPAGIGRT-GRGMGGLFSVGETTAKVLKDEI--DVK--FK 308
Query: 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230
+V G + L + E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +
Sbjct: 309 DVA-GCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANV 367
Query: 231 PFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF 289
PF+ SG+EF + G AR+ ++F++AR+NAP +F+DEIDA+ + R + ++
Sbjct: 368 PFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQ 427
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
E + QL +D F+ V+ + TNRPD LD +RPGR DR+++IG PD K
Sbjct: 428 ENTLNQL-----LVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKG 482
Query: 350 RVQIFDVH----SAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQ 405
R IF VH L +D +L T GFSGAD+ N+ NE+ +++ R I Q
Sbjct: 483 RASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQ 542
Query: 406 QDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHA 465
+ +++ ++ G+ +K Q + E+K+ +A HEAGH V D
Sbjct: 543 KHFEQAIER-VIGGL---------EKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLL 592
Query: 466 FSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGK 525
++P GK + + P+E + YT L +M + GGR +E + FG +T G +
Sbjct: 593 KVSIIPRGKGLGYAQYLPKEQYL---YTKEQLLD-RMCMTLGGRVSEEIFFGR-ITTGAQ 647
Query: 526 DDLEKITKIAREMVIS-PQNARLG 548
DDL K+T+ A ++ N ++G
Sbjct: 648 DDLRKVTQSAYAQIVQFGMNEKVG 671
>UNIPROTKB|E2QYF3 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060013 "righting reflex" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0042407 "cristae
formation" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
EMBL:AAEX03005521 RefSeq:XP_547682.2 ProteinModelPortal:E2QYF3
Ensembl:ENSCAFT00000029872 GeneID:490560 KEGG:cfa:490560
Uniprot:E2QYF3
Length = 806
Score = 523 (189.2 bits), Expect = 8.1e-50, P = 8.1e-50
Identities = 141/444 (31%), Positives = 232/444 (52%)
Query: 112 LIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYK 171
L+++LP +LI++ + T+ R + LF + +L D K +K
Sbjct: 255 LLSMLPTVLIIAFLLYTIRRGPAGIGRT-GRGMGGLFSVGETTAKVLKDEI--DVK--FK 309
Query: 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230
+V G + L + E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +
Sbjct: 310 DVA-GCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANV 368
Query: 231 PFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF 289
PF+ SG+EF + G AR+ ++F++AR+NAP +F+DEIDA+ + R + ++
Sbjct: 369 PFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQ 428
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
E + QL +D F+ V+ + TNRPD LD +RPGR DR+++IG PD K
Sbjct: 429 ENTLNQL-----LVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKG 483
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFR----TVGFSGADIRNLVNESGIMSVRKGHSKIQQ 405
R IF VH +L + E+L + T GFSGAD+ N+ NE+ +++ R I Q
Sbjct: 484 RASIFKVHLRPLKLDSALEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQ 543
Query: 406 QDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHA 465
+ +++ ++ G+ +K Q + E+K+ +A HEAGH V D
Sbjct: 544 KHFEQAIER-VIGGL---------EKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLL 593
Query: 466 FSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGK 525
++P GK + + P+E + YT L +M + GGR +E + FG +T G +
Sbjct: 594 KVSIIPRGKGLGYAQYLPKEQYL---YTKEQLLD-RMCMTLGGRVSEEIFFGR-ITTGAQ 648
Query: 526 DDLEKITKIAREMVIS-PQNARLG 548
DDL K+T+ A ++ N ++G
Sbjct: 649 DDLRKVTQSAYAQIVQFGMNEKVG 672
>TIGR_CMR|DET_0391 [details] [associations]
symbol:DET_0391 "ATP-dependent metalloprotease FtsH"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 OMA:LEIIAMR MEROPS:M41.021
RefSeq:YP_181136.1 ProteinModelPortal:Q3Z9G3 SMR:Q3Z9G3
STRING:Q3Z9G3 GeneID:3230280 KEGG:det:DET0391 PATRIC:21607849
ProtClustDB:CLSK837509 BioCyc:DETH243164:GJNF-391-MONOMER
Uniprot:Q3Z9G3
Length = 608
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 129/364 (35%), Positives = 198/364 (54%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E++ ++ + ++ G + +G+LL GPPGTGKTL A+ +A E+G+PF SG+EF +
Sbjct: 173 EVVEFLKSREKFQALGARIPKGILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 232
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDG 298
GA+R+ ++F A++NAP +F+DEIDA+ AG D R + T ++ ++DG
Sbjct: 233 VGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQ-TLNQILVEMDG 291
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
F +VI I ATNRPD LD +RPGR DRR+ + PD R I +H+
Sbjct: 292 ---------FDTDTSVIVIAATNRPDILDPALLRPGRFDRRVVLDKPDITGREAILKIHA 342
Query: 359 AGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLE 418
GK LA+ VN E L +TVGFSGAD+ NL+NE+ I++ RK ++ +D+ + +D+ ++
Sbjct: 343 KGKPLADTVNLENLAKQTVGFSGADLANLLNEAAILAARKNRKVVETEDLEESIDR-VIA 401
Query: 419 GMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFD-WHAFSQLLPGGKETA 477
G E + ++ +S ++K + A HE GH ++ L D H S ++ G
Sbjct: 402 G-----PERKSRR----ISTQEKEVTAYHETGHGLVLRLVQGADPVHKIS-IVARGMTLG 451
Query: 478 ISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIARE 537
+ P ED T K M G AE L F +++ G DDL + T IA +
Sbjct: 452 HTRQLPNEDRY---LMTRSQFKAMMAGLLAGYVAEELTF-KELSTGASDDLRRATDIAHK 507
Query: 538 MVIS 541
MV S
Sbjct: 508 MVTS 511
>WB|WBGene00004978 [details] [associations]
symbol:spg-7 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0030968 "endoplasmic reticulum unfolded protein response"
evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0008270 GO:GO:0006508
GO:GO:0000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0030968
EMBL:FO081580 HSSP:Q9LCZ4 RefSeq:NP_491165.2
ProteinModelPortal:Q9N3T5 SMR:Q9N3T5 STRING:Q9N3T5 MEROPS:M41.A10
PaxDb:Q9N3T5 EnsemblMetazoa:Y47G6A.10 GeneID:171915
KEGG:cel:CELE_Y47G6A.10 UCSC:Y47G6A.10 CTD:171915
WormBase:Y47G6A.10 InParanoid:Q9N3T5 NextBio:873225 Uniprot:Q9N3T5
Length = 782
Score = 521 (188.5 bits), Expect = 1.0e-49, P = 1.0e-49
Identities = 127/364 (34%), Positives = 198/364 (54%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +PF+ SG+EF +
Sbjct: 307 EFVNFLKNPQQYKDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 366
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD-----PRRRATFEALIAQLDG 298
G AR+ +MFS+AR+N+P +F+DEIDA+ + K + T L+ ++DG
Sbjct: 367 VGVGPARVRDMFSMARKNSPCILFIDEIDAVGRKRGGKGGMGGHSEQENTLNQLLVEMDG 426
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
D S VI I ATNR D LD +RPGR DR++Y+ +PD K R IF VH
Sbjct: 427 FTT----DESS----VIVIAATNRVDILDSALLRPGRFDRQIYVPVPDIKGRASIFRVHL 478
Query: 359 AGKQLAED--VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
+ + D V +L T GFSGADI N+ NE+ +++ R + +I + +++ +
Sbjct: 479 GPLRTSLDKTVLSRKLAAHTPGFSGADISNVCNEAALIAARDANHEISNKHFEQAIER-V 537
Query: 417 LEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET 476
+ GM +K Q + E+K+ +A HEAGH + D ++P GK
Sbjct: 538 VAGM---------EKKTQVLQKEEKKTVAYHEAGHAIAGWFLQHADPLLKVSIIPRGKGL 588
Query: 477 AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAR 536
+ + P+E + Y+ L +M + GGR AE + FG +T G +DDL+K+T++A
Sbjct: 589 GYAQYLPKEQYL---YSKDQLLD-RMCMTLGGRVAEEIFFGR-ITTGAQDDLQKVTQMAY 643
Query: 537 EMVI 540
V+
Sbjct: 644 SQVV 647
>TIGR_CMR|GSU_1180 [details] [associations]
symbol:GSU_1180 "cell division protein FtsH"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
RefSeq:NP_952233.1 ProteinModelPortal:Q74DY5 SMR:Q74DY5
GeneID:2686793 KEGG:gsu:GSU1180 PATRIC:22025134 OMA:VCQWGMS
ProtClustDB:CLSK828230 BioCyc:GSUL243231:GH27-1166-MONOMER
Uniprot:Q74DY5
Length = 617
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 130/365 (35%), Positives = 206/365 (56%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ Y+ +P ++ G + +GVLL GPPGTGKTL AR +A E+ + F+ S ++F +
Sbjct: 187 LKEIVDYLRDPKKFQRIGGKVPKGVLLVGPPGTGKTLLARAVAGEADVTFLSISASQFIE 246
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQL 296
GA R+ ++F+ A+++AP+ +F+DE+DA+ AG D R + T L++++
Sbjct: 247 MFVGVGAGRVRDLFATAKKSAPSIIFIDELDAVGRSRGAGLGGGHDEREQ-TLNQLLSEM 305
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG F VI + ATNRPD LD +RPGR DR + I PD + R +I V
Sbjct: 306 DG---------FDSHDEVIVMAATNRPDVLDPALLRPGRFDRHVVIDRPDWRDREKILHV 356
Query: 357 HSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
H+ L +DV+ + T G +GAD+ NLVNE+ I++ R+ + + + + DK L
Sbjct: 357 HTRKIPLDKDVDLAVIARGTPGMAGADLENLVNEAAILAARENAATVTMEHMERAKDKVL 416
Query: 417 LEG-MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFD-WHAFSQLLPGGK 474
+ G + +TE+E KR+ A HEAGH ++A L P D H + ++P G+
Sbjct: 417 MGGERKMFITEQE------------KRITAYHEAGHTIVAKLLPGTDPVHKVT-IIPRGQ 463
Query: 475 ETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKI 534
++ P ED D+ + YL ++ VA GGR AER VFGD ++ G ++DL+ + +
Sbjct: 464 ALGVTQQLP-ED--DRYHYPKSYLMNRLSVALGGRQAERAVFGD-LSTGAQNDLKMVNDL 519
Query: 535 AREMV 539
A +MV
Sbjct: 520 AEKMV 524
>RGD|1309722 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=ISO] [GO:0008053 "mitochondrial fusion"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=ISO] [GO:0042407
"cristae formation" evidence=ISO] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1309722
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
IPI:IPI00365343 Ensembl:ENSRNOT00000065957 UCSC:RGD:1309722
ArrayExpress:F1LS61 Uniprot:F1LS61
Length = 761
Score = 518 (187.4 bits), Expect = 1.6e-49, P = 1.6e-49
Identities = 129/374 (34%), Positives = 200/374 (53%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +PF+ +G+EF +
Sbjct: 286 EFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATAGEAKVPFITVNGSEFLEMF 345
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIA---GR-HARKDPRRRATFEALIAQLDGD 299
G AR+ +MF++AR++AP +F+DEIDAI GR H + T ++ ++DG
Sbjct: 346 VGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGF 405
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH-- 357
T V+ + TNRPD LD RPGR DR++YIG PD K R IF VH
Sbjct: 406 NSTTN---------VVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLR 456
Query: 358 --SAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415
+ L D +L T GF+GADI N+ NE+ +++ R +Q++ +++
Sbjct: 457 PLKLDESLTRDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIER- 515
Query: 416 LLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKE 475
++ G+ E++ Q + S +K +A HEAGH V+ D ++P GK
Sbjct: 516 VIGGL-----EKKTQVLQPS----EKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKG 566
Query: 476 TAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIA 535
+ + PRE + YT L +M + GGR AE+L FG +T G +DDL K+T+ A
Sbjct: 567 LGYAQYLPREQYL---YTR-EQLFDRMCMMLGGRVAEQLFFGQ-ITTGAQDDLRKVTQSA 621
Query: 536 REMVIS-PQNARLG 548
++ + +LG
Sbjct: 622 YAQIVQFGMSEKLG 635
>MGI|MGI:1928277 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=ISA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IGI] [GO:0008053 "mitochondrial fusion" evidence=IGI]
[GO:0008152 "metabolic process" evidence=ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IGI] [GO:0042407 "cristae formation" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1928277
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0031966
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 EMBL:AK012394 EMBL:AK159647 EMBL:AK167964
EMBL:AK168244 EMBL:BC056978 EMBL:AF329695 IPI:IPI00468514
IPI:IPI00652659 RefSeq:NP_473411.2 UniGene:Mm.287475
ProteinModelPortal:Q920A7 SMR:Q920A7 IntAct:Q920A7 STRING:Q920A7
MEROPS:M41.016 PhosphoSite:Q920A7 PaxDb:Q920A7 PRIDE:Q920A7
Ensembl:ENSMUST00000001520 Ensembl:ENSMUST00000098320 GeneID:114896
KEGG:mmu:114896 UCSC:uc009nwd.2 CTD:114896 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 InParanoid:Q920A7 KO:K08956 OMA:WDEKDFR
OrthoDB:EOG4SBDXC NextBio:368917 Bgee:Q920A7 CleanEx:MM_AFG3L1
Genevestigator:Q920A7 GermOnline:ENSMUSG00000031967 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
Uniprot:Q920A7
Length = 789
Score = 519 (187.8 bits), Expect = 1.9e-49, P = 1.9e-49
Identities = 129/374 (34%), Positives = 201/374 (53%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +PF+ +G+EF +
Sbjct: 314 EFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMF 373
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIA---GR-HARKDPRRRATFEALIAQLDGD 299
G AR+ +MF++AR++AP +F+DEIDAI GR H + T ++ ++DG
Sbjct: 374 VGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGF 433
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH-- 357
T V+ + TNRPD LD RPGR DR++YIG PD K R IF VH
Sbjct: 434 NSSTN---------VVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLR 484
Query: 358 --SAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415
L++D +L T GF+GADI N+ NE+ +++ R +Q++ +++
Sbjct: 485 PLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIER- 543
Query: 416 LLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKE 475
++ G+ E++ Q + S +K +A HEAGH V+ D ++P GK
Sbjct: 544 VIGGL-----EKKTQVLQPS----EKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKG 594
Query: 476 TAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIA 535
+ + PRE + YT L +M + GGR AE+L FG +T G +DDL K+T+ A
Sbjct: 595 LGYAQYLPREQFL---YTR-EQLFDRMCMMLGGRVAEQLFFGQ-ITTGAQDDLRKVTQSA 649
Query: 536 REMVIS-PQNARLG 548
++ + +LG
Sbjct: 650 YAQIVQFGMSEKLG 663
>MGI|MGI:1916847 [details] [associations]
symbol:Afg3l2 "AFG3(ATPase family gene 3)-like 2 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IGI] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0008053 "mitochondrial fusion"
evidence=IGI] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016265 "death" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0021675 "nerve development" evidence=IMP]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IGI] [GO:0040014
"regulation of multicellular organism growth" evidence=IMP]
[GO:0042407 "cristae formation" evidence=IGI] [GO:0042552
"myelination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048747 "muscle fiber development" evidence=IMP]
[GO:0060013 "righting reflex" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1916847
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
MEROPS:M41.007 EMBL:BC036999 EMBL:BC043056 IPI:IPI00170357
RefSeq:NP_081406.1 UniGene:Mm.426052 ProteinModelPortal:Q8JZQ2
SMR:Q8JZQ2 IntAct:Q8JZQ2 STRING:Q8JZQ2 PhosphoSite:Q8JZQ2
PaxDb:Q8JZQ2 PRIDE:Q8JZQ2 Ensembl:ENSMUST00000025408 GeneID:69597
KEGG:mmu:69597 UCSC:uc008fmf.1 InParanoid:Q8JZQ2 NextBio:329880
Bgee:Q8JZQ2 CleanEx:MM_AFG3L2 Genevestigator:Q8JZQ2
GermOnline:ENSMUSG00000024527 Uniprot:Q8JZQ2
Length = 802
Score = 519 (187.8 bits), Expect = 2.2e-49, P = 2.2e-49
Identities = 140/444 (31%), Positives = 230/444 (51%)
Query: 112 LIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYK 171
L+++LP +LI++ + T+ R + LF + +L D K +K
Sbjct: 253 LLSMLPTVLIIAFLLYTIRRGPAGIGRT-GRGMGGLFSVGETTAKVLKDEI--DVK--FK 307
Query: 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230
+V G + L + E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +
Sbjct: 308 DVA-GCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANV 366
Query: 231 PFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF 289
PF+ SG+EF + G AR+ ++F++AR+NAP +F+DEIDA+ + R + ++
Sbjct: 367 PFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQ 426
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
E + QL +D F+ V+ + TNRPD LD +RPGR DR+++IG PD K
Sbjct: 427 ENTLNQL-----LVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKG 481
Query: 350 RVQIFDVH----SAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQ 405
R IF VH L +D +L T GFSGAD+ N+ NE+ +++ R I +
Sbjct: 482 RASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINE 541
Query: 406 QDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHA 465
+ +++ ++ G+ +K Q + E+K+ +A HEAGH V D
Sbjct: 542 KHFEQAIER-VIGGL---------EKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLL 591
Query: 466 FSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGK 525
++P GK + + P+E + YT L +M + GGR +E + FG +T G +
Sbjct: 592 KVSIIPRGKGLGYAQYLPKEQYL---YTKEQLLD-RMCMTLGGRVSEEIFFGR-ITTGAQ 646
Query: 526 DDLEKITKIAREMVIS-PQNARLG 548
DDL K+T+ A ++ N ++G
Sbjct: 647 DDLRKVTQSAYAQIVQFGMNEKVG 670
>UNIPROTKB|F1LN92 [details] [associations]
symbol:Afg3l2 "Protein Afg3l2" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016265 "death" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0021675 "nerve development" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1305259
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
IPI:IPI00192903 RefSeq:NP_001128336.1 UniGene:Rn.8386
ProteinModelPortal:F1LN92 PRIDE:F1LN92 Ensembl:ENSRNOT00000024632
GeneID:307350 KEGG:rno:307350 NextBio:657254 ArrayExpress:F1LN92
Uniprot:F1LN92
Length = 802
Score = 519 (187.8 bits), Expect = 2.2e-49, P = 2.2e-49
Identities = 140/444 (31%), Positives = 230/444 (51%)
Query: 112 LIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYK 171
L+++LP +LI++ + T+ R + LF + +L D K +K
Sbjct: 253 LLSMLPTVLIIAFLLYTIRRGPAGIGRT-GRGMGGLFSVGETTAKVLKDEI--DVK--FK 307
Query: 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230
+V G + L + E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +
Sbjct: 308 DVA-GCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANV 366
Query: 231 PFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF 289
PF+ SG+EF + G AR+ ++F++AR+NAP +F+DEIDA+ + R + ++
Sbjct: 367 PFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQ 426
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
E + QL +D F+ V+ + TNRPD LD +RPGR DR+++IG PD K
Sbjct: 427 ENTLNQL-----LVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKG 481
Query: 350 RVQIFDVH----SAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQ 405
R IF VH L +D +L T GFSGAD+ N+ NE+ +++ R I +
Sbjct: 482 RASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINE 541
Query: 406 QDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHA 465
+ +++ ++ G+ +K Q + E+K+ +A HEAGH V D
Sbjct: 542 KHFEQAIER-VIGGL---------EKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLL 591
Query: 466 FSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGK 525
++P GK + + P+E + YT L +M + GGR +E + FG +T G +
Sbjct: 592 KVSIIPRGKGLGYAQYLPKEQYL---YTKEQLLD-RMCMTLGGRVSEEIFFGR-ITTGAQ 646
Query: 526 DDLEKITKIAREMVIS-PQNARLG 548
DDL K+T+ A ++ N ++G
Sbjct: 647 DDLRKVTQSAYAQIVQFGMNEKVG 670
>GENEDB_PFALCIPARUM|PF14_0616 [details] [associations]
symbol:PF14_0616 "i-AAA protease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
Uniprot:Q8IKI9
Length = 706
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 133/425 (31%), Positives = 227/425 (53%)
Query: 123 SLIRETVMLLHITSSRLLYKK---YNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDV 179
+L++ T+ L + ++ +Y + N + + I+PV + K + +V +V
Sbjct: 206 NLLKSTIGFLILVAAGSVYMEGVSQNVQKGIGVSNKKIIPV---ENVKVTFADVKGCDEV 262
Query: 180 WDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239
L+E++ Y+ N ++ + G + +G+LLSG PGTGKTL AR +A E+ +PF+ ASG+E
Sbjct: 263 KQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGEANVPFLQASGSE 322
Query: 240 FTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR-RATFEALIAQLD 297
F + GA RI E+F A+++AP VF+DEIDA+ + + +D R T L+ +LD
Sbjct: 323 FEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRDNSAVRMTLNQLLVELD 382
Query: 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357
G ++ GI + ICATN P LD VRPGR+D+ + + LPD K R +I ++
Sbjct: 383 GFEQNEGI---------VVICATNFPQSLDKALVRPGRLDKTIVVPLPDIKGRYEILKMY 433
Query: 358 SAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLL 417
S L++DV+ L RTVG +GAD+ N++N + I +G + I D+ ++
Sbjct: 434 SNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKSVDMNSIEQAFDRVVV 493
Query: 418 EGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETA 477
G+ Q+K ++ E+K + A HE GH ++ D + ++P G
Sbjct: 494 -GL--------QRK--SPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLG 542
Query: 478 ISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAR 536
++ P D Q ++ ++ + GG +E ++FG ++VT G DL+K T IA+
Sbjct: 543 VTWKIPISDKYSQKIKD---VQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQKATHIAQ 599
Query: 537 EMVIS 541
+V++
Sbjct: 600 SLVMN 604
>UNIPROTKB|Q8IKI9 [details] [associations]
symbol:PF14_0616 "ATP-dependent protease la, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
Uniprot:Q8IKI9
Length = 706
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 133/425 (31%), Positives = 227/425 (53%)
Query: 123 SLIRETVMLLHITSSRLLYKK---YNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDV 179
+L++ T+ L + ++ +Y + N + + I+PV + K + +V +V
Sbjct: 206 NLLKSTIGFLILVAAGSVYMEGVSQNVQKGIGVSNKKIIPV---ENVKVTFADVKGCDEV 262
Query: 180 WDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239
L+E++ Y+ N ++ + G + +G+LLSG PGTGKTL AR +A E+ +PF+ ASG+E
Sbjct: 263 KQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGEANVPFLQASGSE 322
Query: 240 FTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR-RATFEALIAQLD 297
F + GA RI E+F A+++AP VF+DEIDA+ + + +D R T L+ +LD
Sbjct: 323 FEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRDNSAVRMTLNQLLVELD 382
Query: 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357
G ++ GI + ICATN P LD VRPGR+D+ + + LPD K R +I ++
Sbjct: 383 GFEQNEGI---------VVICATNFPQSLDKALVRPGRLDKTIVVPLPDIKGRYEILKMY 433
Query: 358 SAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLL 417
S L++DV+ L RTVG +GAD+ N++N + I +G + I D+ ++
Sbjct: 434 SNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKSVDMNSIEQAFDRVVV 493
Query: 418 EGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETA 477
G+ Q+K ++ E+K + A HE GH ++ D + ++P G
Sbjct: 494 -GL--------QRK--SPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLG 542
Query: 478 ISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAR 536
++ P D Q ++ ++ + GG +E ++FG ++VT G DL+K T IA+
Sbjct: 543 VTWKIPISDKYSQKIKD---VQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQKATHIAQ 599
Query: 537 EMVIS 541
+V++
Sbjct: 600 SLVMN 604
>MGI|MGI:1351651 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0006515
"misfolded or incompletely synthesized protein catabolic process"
evidence=ISO] [GO:0007005 "mitochondrion organization"
evidence=ISO] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008283
"cell proliferation" evidence=ISO] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
MGI:MGI:1351651 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0004222 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
HOGENOM:HOG000217276 GeneTree:ENSGT00550000074836 KO:K08955
CTD:10730 HOVERGEN:HBG057127 OMA:HTSHVSA EMBL:AF090430
EMBL:AY136286 EMBL:AY136287 EMBL:AK079175 EMBL:BC007128
IPI:IPI00136555 RefSeq:NP_038799.1 UniGene:Mm.23335
ProteinModelPortal:O88967 SMR:O88967 STRING:O88967
PhosphoSite:O88967 PaxDb:O88967 PRIDE:O88967
Ensembl:ENSMUST00000028117 GeneID:27377 KEGG:mmu:27377
InParanoid:O88967 OrthoDB:EOG4KH2TK NextBio:305300 Bgee:O88967
CleanEx:MM_YME1L1 Genevestigator:O88967
GermOnline:ENSMUSG00000026775 Uniprot:O88967
Length = 715
Score = 495 (179.3 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
Identities = 127/372 (34%), Positives = 197/372 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 293 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 352
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 353 MFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 412
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 413 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLN 463
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 464 KIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL--- 520
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++P G
Sbjct: 521 MG-----PERRSVE--IDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 573
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D ++ T L QM V+ GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 574 SLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM 630
Query: 539 VIS-PQNARLGL 549
V + +LG+
Sbjct: 631 VTKFGMSEKLGV 642
Score = 37 (18.1 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 98 DL-LQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDM 150
DL L + +I K++ LLPG + HI++ KY L DM
Sbjct: 62 DLGLSELKIGQIDKMVENLLPGFYKDKRVSSCWHTSHISAQSFFENKYGHL-DM 114
>UNIPROTKB|G3V886 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382 RGD:620764
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 KO:K08955 MEROPS:M41.A20 OMA:HTSHVSA
UniGene:Rn.8153 EMBL:CH474100 RefSeq:XP_003751780.1
Ensembl:ENSRNOT00000023395 GeneID:100910779 KEGG:rno:100910779
Uniprot:G3V886
Length = 715
Score = 495 (179.3 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
Identities = 127/372 (34%), Positives = 197/372 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 293 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 352
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 353 MFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 412
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 413 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLN 463
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 464 KIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL--- 520
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++P G
Sbjct: 521 MG-----PERRSVE--IDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 573
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D ++ T L QM V+ GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 574 SLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM 630
Query: 539 VIS-PQNARLGL 549
V + +LG+
Sbjct: 631 VTKFGMSEKLGV 642
Score = 37 (18.1 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 98 DL-LQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDM 150
DL L + +I K++ LLPG + HI++ KY L DM
Sbjct: 62 DLGLSELKIGQIDKLVENLLPGFYKDKRVSSCWHTSHISAQSFFENKYGHL-DM 114
>UNIPROTKB|E1BFQ0 [details] [associations]
symbol:E1BFQ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042407 "cristae formation" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 OMA:WDEKDFR GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:DAAA02046282 IPI:IPI00707325 Ensembl:ENSBTAT00000056979
Uniprot:E1BFQ0
Length = 802
Score = 515 (186.3 bits), Expect = 6.1e-49, P = 6.1e-49
Identities = 139/395 (35%), Positives = 209/395 (52%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + ++ NP QY + G + +G LL+GPPGTGKTL A+ A E+G+PF+ +G+EF +
Sbjct: 317 EFVNFLKNPKQYQDLGAKIPKGALLTGPPGTGKTLLAKATAGEAGVPFITVNGSEFLEMF 376
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIA---GR-HARKDPRRRATFEALIAQLDGD 299
G AR+ +MF++AR+NAP +FVDEIDAI GR H + T L+ ++DG
Sbjct: 377 VGVGPARVRDMFALARKNAPCILFVDEIDAIGRKRGRGHFGGQSEQENTLNQLLVEMDGF 436
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH-- 357
T V+ + TNRPD LD +RPGR DR++YIG PD K R IF VH
Sbjct: 437 NSTTN---------VVVLAGTNRPDVLDPALMRPGRFDRQIYIGPPDIKGRSSIFRVHLR 487
Query: 358 --SAGKQLAEDVNFEELVFRTVGF--SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413
+ L++D +L T GF SGADI N+ NE+ +++ R + + ++ ++
Sbjct: 488 PLKLDESLSKDALARKLAALTPGFTGSGADISNVCNEAALIAARHLNPSVGEKHFEQAIE 547
Query: 414 KQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGG 473
+ ++ G+ E++ Q + +K +A HEAGH V+ D ++P G
Sbjct: 548 R-VIGGL-----EKKTQVLQPG----EKMTVAYHEAGHAVVGWFLEHADPLLKVSIVPRG 597
Query: 474 KETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITK 533
K + PRE + YT L +M GGR AE+L FG VT G +DDL K+T+
Sbjct: 598 KGLGYAQCLPREQYL---YTR-EQLFDRMCAMLGGRVAEQLFFGR-VTTGAQDDLRKVTQ 652
Query: 534 IAREMVIS-PQNARLGLAGLTR-RVG--LLDRPDS 564
A ++ + +LG R G L+++P S
Sbjct: 653 SAYAQIVQFGMSEKLGQVSFDLPRPGEALVEKPFS 687
>TAIR|locus:2163736 [details] [associations]
symbol:FTSH11 "FTSH protease 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=TAS] [GO:0009408 "response to heat" evidence=IMP]
[GO:0009644 "response to high light intensity" evidence=IMP]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005743 GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0009408 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176
EMBL:AB025622 HOGENOM:HOG000217276 GO:GO:0010304 EMBL:AY091086
EMBL:AY123027 IPI:IPI00537766 RefSeq:NP_568787.1 UniGene:At.7145
ProteinModelPortal:Q9FGM0 SMR:Q9FGM0 MEROPS:M41.018 PaxDb:Q9FGM0
PRIDE:Q9FGM0 EnsemblPlants:AT5G53170.1 GeneID:835398
KEGG:ath:AT5G53170 GeneFarm:4747 TAIR:At5g53170 InParanoid:Q9FGM0
OMA:DIMPEKN PhylomeDB:Q9FGM0 ProtClustDB:CLSN2690002
Genevestigator:Q9FGM0 Uniprot:Q9FGM0
Length = 806
Score = 513 (185.6 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 129/406 (31%), Positives = 213/406 (52%)
Query: 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG 229
+K+V D L+E++ Y+ NP ++ G + +G+LL+G PGTGKTL A+ +A E+G
Sbjct: 361 FKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG 420
Query: 230 LPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRAT 288
+PF + +G+EF + GA R+ +F A++ AP +F+DEIDA+ + + + T
Sbjct: 421 VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKT 480
Query: 289 FEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAK 348
L+ ++DG ++ GI I + ATN PD LD RPGR DR + + PD +
Sbjct: 481 LHQLLVEMDGFEQNEGI---------IVMAATNLPDILDPALTRPGRFDRHIVVPSPDVR 531
Query: 349 QRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408
R +I +++ GK ++EDV+ + + T GF+GAD+ NLVN + I + +G K+ + +
Sbjct: 532 GREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSSEQL 591
Query: 409 VDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLA-HLFPRFDWHAFS 467
D+ + MG TE + VS + K+L A HE+GH ++A + H +
Sbjct: 592 EFAKDRIV---MG---TERKTM----FVSEDSKKLTAYHESGHAIVALNTKGAHPIHK-A 640
Query: 468 QLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKD 526
++P G + P D + L ++ V GGR AE L+FG D +T G
Sbjct: 641 TIMPRGSALGMVTQLPSNDETS---VSKRQLLARLDVCMGGRVAEELIFGLDHITTGASS 697
Query: 527 DLEKITKIAREMVIS-PQNARLGLAGLTRRVGLLDRPDSSDGDLIK 571
DL + T++A+ MV S + +G + R D D +++K
Sbjct: 698 DLSQATELAQYMVSSCGMSEAIGPVHIKERPSS-DMQSRIDAEVVK 742
>DICTYBASE|DDB_G0267492 [details] [associations]
symbol:DDB_G0267492 "peptidase M41, FtsH
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0267492 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
EMBL:AAFI02000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 RefSeq:XP_647076.1
ProteinModelPortal:Q55GV8 SMR:Q55GV8 MEROPS:M41.A18
EnsemblProtists:DDB0189322 GeneID:8615880 KEGG:ddi:DDB_G0267492
OMA:RINENNQ Uniprot:Q55GV8
Length = 720
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 125/366 (34%), Positives = 198/366 (54%)
Query: 177 GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236
G++ DL+D ++ NP +YY R + +G+LL GPPGTGKTL A++LA E+ + F+ +
Sbjct: 174 GELQDLVD----FLRNPEKYYRRNIVMPKGILLVGPPGTGKTLLAKSLAGEARVSFITIN 229
Query: 237 GAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAG-RHARKDPRRRATFEALIA 294
G+EF ++ GA R+ E+F AR+N+P VF+DEID++ G R R + L+
Sbjct: 230 GSEFEEAFVGVGAKRVRELFEAARKNSPCIVFIDEIDSVGGSRTKRVNYHPSEALNQLLV 289
Query: 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIF 354
+LDG F R+ V+ + ATN D LD +R GR DR + + LPD K R I
Sbjct: 290 ELDG---------FDGREGVMVMAATNYQDSLDTALIRSGRFDRIIQVPLPDGKARKSII 340
Query: 355 DVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
D + K +A VN + T GFSGAD+ NLVN + + + + +I + + + +
Sbjct: 341 DHYLKDKPIASHVNTTTIAQSTPGFSGADLFNLVNWAALETTKHNLPEITMEQLENAKEN 400
Query: 415 QLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGK 474
+ MG +++ +S E +++ A HEAGH ++A + P + ++P G
Sbjct: 401 LM---MG-------KERHSLLMSDEARKICAFHEAGHALVAIMTPGARTVHKATIMPRGD 450
Query: 475 ETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITK 533
+ +E+T + T L QM VA GGR AE L+ G ++++ G D++K T
Sbjct: 451 ALGLVSMLEKEET----FVTKKQLIAQMDVAMGGRAAEELILGKENISQGASSDIQKATS 506
Query: 534 IAREMV 539
IA+ MV
Sbjct: 507 IAKAMV 512
>CGD|CAL0002950 [details] [associations]
symbol:YME1 species:5476 "Candida albicans" [GO:0031942
"i-AAA complex" evidence=IEA] [GO:0006515 "misfolded or
incompletely synthesized protein catabolic process" evidence=IEA]
[GO:0001300 "chronological cell aging" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 CGD:CAL0002950 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.004
EMBL:AACQ01000068 EMBL:AACQ01000067 KO:K08955 RefSeq:XP_716504.1
RefSeq:XP_716560.1 ProteinModelPortal:Q5A458 SMR:Q5A458
STRING:Q5A458 GeneID:3641816 GeneID:3641839 KEGG:cal:CaO19.1252
KEGG:cal:CaO19.8836 Uniprot:Q5A458
Length = 687
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 133/384 (34%), Positives = 201/384 (52%)
Query: 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFAR 222
VS + +K+V + L+E++ ++ +P ++ G + +GVLL+GPPGTGKTL AR
Sbjct: 217 VSQSTVRFKDVQGCDEARAELEEIVDFLKDPSKFTGLGGKLPKGVLLTGPPGTGKTLLAR 276
Query: 223 TLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK 281
A E+G+PF F SG+EF + GA RI E+FS AR APA +F+DE+DAI G+ K
Sbjct: 277 ATAGEAGVPFFFMSGSEFDELYVGVGAKRIRELFSQARDKAPAIIFIDELDAIGGKRNPK 336
Query: 282 DPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ +LDG FS + +I I ATN P+ LD RPGR D+ +
Sbjct: 337 DQAYAKQTLNQLLVELDG---------FSQTEGIIIIGATNFPESLDKALTRPGRFDKEV 387
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
+ LPD + R+ I H + A+DV+ + T G SGA++ NLVN++ + + +
Sbjct: 388 IVDLPDVRGRIDILKHHMQNVETADDVDPSIIARGTPGLSGAELMNLVNQAAVHASQLSA 447
Query: 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPR 460
+ DK L MG K + ++ E + A HEAGH ++A +F +
Sbjct: 448 PAVDMNHFEWAKDKIL---MGAA-------KKKMVITEESRINTAYHEAGHAIMA-MFSK 496
Query: 461 FDWHAF-SQLLPGGKETAISVFYPREDTIDQG-YTTFGYLKMQMVVAHGGRCAERLVFG- 517
+ + +LP G+ I+ P D +D F L + M GG+ AE ++ G
Sbjct: 497 GATPLYKATILPRGRALGITFQLPEMDKVDMSKQECFARLDVCM----GGKIAEEMINGK 552
Query: 518 DDVTDGGKDDLEKITKIAREMVIS 541
++VT G DL T +AR MV S
Sbjct: 553 ENVTSGCASDLSNATSVARAMVTS 576
>SGD|S000004695 [details] [associations]
symbol:YTA12 "Component of the mitochondrial inner membrane
m-AAA protease" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS;IDA;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0006508 "proteolysis" evidence=IEA;IMP]
[GO:0016020 "membrane" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;IDA]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=IEA;IMP] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0045041 "protein import into mitochondrial
intermembrane space" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006461 "protein complex assembly" evidence=IMP]
[GO:0006465 "signal peptide processing" evidence=IMP] [GO:0005745
"m-AAA complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0031966 "mitochondrial membrane" evidence=IEA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 SGD:S000004695 EMBL:U09358 GO:GO:0005524
GO:GO:0006461 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0008237 GO:GO:0004222 GO:GO:0016887 EMBL:BK006946
GO:GO:0030163 EMBL:Z49259 eggNOG:COG0465
GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0097002 GO:GO:0045041
GO:GO:0006465 EMBL:X81068 EMBL:AY693099 PIR:S54465
RefSeq:NP_013807.1 ProteinModelPortal:P40341 SMR:P40341
DIP:DIP-889N IntAct:P40341 MINT:MINT-596896 STRING:P40341
MEROPS:M41.003 PaxDb:P40341 PeptideAtlas:P40341
EnsemblFungi:YMR089C GeneID:855114 KEGG:sce:YMR089C CYGD:YMR089c
OMA:NFSGAND NextBio:978455 Genevestigator:P40341 GermOnline:YMR089C
Uniprot:P40341
Length = 825
Score = 509 (184.2 bits), Expect = 3.4e-48, P = 3.4e-48
Identities = 142/419 (33%), Positives = 218/419 (52%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
+D K +K+V + + + E + ++ P +Y + G + RG +LSGPPGTGKTL A+
Sbjct: 341 TDVKIKFKDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKA 400
Query: 224 LAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIA-----GR 277
A E+G+PF F SG+EF + GAAR+ ++F AR NAP+ VF+DEIDAI G
Sbjct: 401 TAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGN 460
Query: 278 HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337
+ + R T ++ ++DG F+ V+ + TNRPD LD +RPGR D
Sbjct: 461 FSGANDERENTLNQMLVEMDG---------FTPADHVVVLAGTNRPDILDKALLRPGRFD 511
Query: 338 RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFE---ELVFRTVGFSGADIRNLVNESGIM 394
R + I P+ + R IF VH +LA ++ F+ L T GFSGADI N+ NE+ ++
Sbjct: 512 RHINIDKPELEGRKAIFAVHLHHLKLAGEI-FDLKNRLAALTPGFSGADIANVCNEAALI 570
Query: 395 SVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 454
+ R ++ +++ + G GV E + K +S E+K+++A HEAGH V
Sbjct: 571 AARSDEDAVKLNHFEQAIERVI--G-GV----ERKSKL---LSPEEKKVVAYHEAGHAVC 620
Query: 455 AHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERL 514
D ++P G + A+ Y + D T LK +M ++ GGR +E L
Sbjct: 621 GWYLKYADPLLKVSIIPRG-QGALG--YAQYLPGDIFLLTEQQLKDRMTMSLGGRVSEEL 677
Query: 515 VFGDDVTDGGKDDLEKITKIAREMVIS-PQNARLGLAGLTRRVGL-LDRPDSSD-GDLI 570
F VT G DD +K+T +A MV + ++G +R L +P S + GD+I
Sbjct: 678 HF-PSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDDSDLTKPFSDETGDII 735
Score = 125 (49.1 bits), Expect = 0.00036, P = 0.00036
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 436 VSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTF 495
+S E+K+++A HEAGH V D ++P G + A+ Y + D T
Sbjct: 602 LSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRG-QGALG--YAQYLPGDIFLLTE 658
Query: 496 GYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRR 555
LK +M ++ GGR +E L F VT G DD +K+T +A MV G++ +
Sbjct: 659 QQLKDRMTMSLGGRVSEELHF-PSVTSGASDDFKKVTSMATAMVTE--------LGMSDK 709
Query: 556 VGLLDRPDSSDGDLIKYRWDDP-QVIPTDMTLELSELFTRELTRVIIKK 603
+G ++ D DL K D+ +I +++ + E R T+++ +K
Sbjct: 710 IGWVNYQKRDDSDLTKPFSDETGDIIDSEVYRIVQECHDR-CTKLLKEK 757
>RGD|620764 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO;ISS] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISO;ISS]
[GO:0007005 "mitochondrion organization" evidence=ISO;ISS]
[GO:0008283 "cell proliferation" evidence=ISO;ISS] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 RGD:620764 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0004222 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
HOGENOM:HOG000217276 MEROPS:M41.A20 HOVERGEN:HBG057127
OrthoDB:EOG4KH2TK EMBL:AF151784 IPI:IPI00206065 UniGene:Rn.8153
ProteinModelPortal:Q925S8 SMR:Q925S8 MINT:MINT-4611841
STRING:Q925S8 PRIDE:Q925S8 UCSC:RGD:620764 InParanoid:Q925S8
Genevestigator:Q925S8 GermOnline:ENSRNOG00000017100 Uniprot:Q925S8
Length = 715
Score = 485 (175.8 bits), Expect = 6.6e-48, Sum P(2) = 6.6e-48
Identities = 126/372 (33%), Positives = 196/372 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 293 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 352
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 353 MFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIEFPMHPYSRQTIIQLLAEMDGF 412
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 413 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLN 463
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 464 KIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL--- 520
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++P G
Sbjct: 521 MG-----PERRSVE--IDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 573
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D ++ L QM V+ GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 574 SLLPENDRWNE---IRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM 630
Query: 539 VIS-PQNARLGL 549
V + +LG+
Sbjct: 631 VTKFGMSEKLGV 642
Score = 37 (18.1 bits), Expect = 6.6e-48, Sum P(2) = 6.6e-48
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 98 DL-LQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDM 150
DL L + +I K++ LLPG + HI++ KY L DM
Sbjct: 62 DLGLSELKIGQIDKLVENLLPGFYKDKRVSSCWHTSHISAQSFFENKYGHL-DM 114
>POMBASE|SPBC543.09 [details] [associations]
symbol:yta12 "mitochondrial m-AAA protease Yta12
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005745 "m-AAA complex" evidence=ISO] [GO:0006091 "generation
of precursor metabolites and energy" evidence=NAS] [GO:0006465
"signal peptide processing" evidence=ISO] [GO:0006508 "proteolysis"
evidence=ISO] [GO:0008237 "metallopeptidase activity" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=ISO] [GO:0045041 "protein import into
mitochondrial intermembrane space" evidence=ISO] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC543.09
GO:GO:0005524 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
GO:GO:0006508 GO:GO:0008237 GO:GO:0004222 GO:GO:0006091
GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
KO:K08956 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 OMA:LYRFVTT
OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0045041 GO:GO:0006465
GO:GO:0033108 RefSeq:NP_596797.1 ProteinModelPortal:Q9HGM3
SMR:Q9HGM3 STRING:Q9HGM3 MEROPS:M41.A14 EnsemblFungi:SPBC543.09.1
GeneID:2541079 KEGG:spo:SPBC543.09 NextBio:20802192 Uniprot:Q9HGM3
Length = 773
Score = 503 (182.1 bits), Expect = 1.0e-47, P = 1.0e-47
Identities = 125/386 (32%), Positives = 207/386 (53%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYER-GVQFVRGVLLSGPPGTGKTLFAR 222
+D K + +V + + + E + ++ NP ++YER G + RG +LSGPPGTGKTL A+
Sbjct: 289 TDIKIKFADVAGVDEAKEEIMEFVKFLKNP-KFYERLGAKIPRGAILSGPPGTGKTLLAK 347
Query: 223 TLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIA---GRH 278
A E+ +PF+ SG+EF + G +R+ ++F+ AR+NAP +F+DEIDAI GR
Sbjct: 348 ATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRG 407
Query: 279 AR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336
+ + R +T L+ ++DG F+ + ++ TNRPD LD +RPGR
Sbjct: 408 GQFGSNDERESTLNQLLVEMDG---------FTSSEHIVVFAGTNRPDVLDPALLRPGRF 458
Query: 337 DRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIM 394
DR++ I PD R QIF VH + A++++ + L T GF+GADI N+ NE ++
Sbjct: 459 DRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALI 518
Query: 395 SVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 454
+ R +++Q +++ + G+ +K + +S E+K +A HEAGH V
Sbjct: 519 AARSNSNEVQMVHFEQAIER-VTAGL---------EKKSRVLSPEEKNTVAHHEAGHAVA 568
Query: 455 AHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERL 514
D ++P + + + P+ DQ + G + QM +A GR +E +
Sbjct: 569 GWFMEYVDPLLKVSIIPRAQALGYASYLPK----DQYLMSRGQILDQMGMALAGRVSEEI 624
Query: 515 VFGDD-VTDGGKDDLEKITKIAREMV 539
FG + +T G DD +K+T++A+ V
Sbjct: 625 FFGPEKITSGASDDFQKVTRMAQAYV 650
>UNIPROTKB|J9NRR9 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0016020
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01241 GeneTree:ENSGT00550000074836 EMBL:AAEX03001169
Ensembl:ENSCAFT00000045217 Uniprot:J9NRR9
Length = 694
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 127/372 (34%), Positives = 197/372 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 293 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 352
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 353 MFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 412
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 413 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLN 463
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 464 KIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL--- 520
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++P G
Sbjct: 521 MG-----PERRSVE--IDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 573
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D ++ T L QM V+ GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 574 SLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM 630
Query: 539 VIS-PQNARLGL 549
V + +LG+
Sbjct: 631 VTKFGMSEKLGV 642
>UNIPROTKB|F1PRV6 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 OMA:HTSHVSA EMBL:AAEX03001169
Ensembl:ENSCAFT00000007090 Uniprot:F1PRV6
Length = 748
Score = 496 (179.7 bits), Expect = 4.6e-47, P = 4.6e-47
Identities = 127/372 (34%), Positives = 197/372 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 327 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 386
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 387 MFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 446
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 447 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLN 497
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 498 KIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL--- 554
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++P G
Sbjct: 555 MG-----PERRSVE--IDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 607
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D ++ T L QM V+ GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 608 SLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM 664
Query: 539 VIS-PQNARLGL 549
V + +LG+
Sbjct: 665 VTKFGMSEKLGV 676
>WB|WBGene00010842 [details] [associations]
symbol:ymel-1 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:Z49128 PIR:T23690
RefSeq:NP_499298.2 ProteinModelPortal:P54813 SMR:P54813
MEROPS:M41.A11 PaxDb:P54813 EnsemblMetazoa:M03C11.5.1
EnsemblMetazoa:M03C11.5.2 GeneID:176460 KEGG:cel:CELE_M03C11.5
UCSC:M03C11.5.1 CTD:176460 WormBase:M03C11.5
GeneTree:ENSGT00550000074836 InParanoid:P54813 OMA:KWNQYES
NextBio:892672 Uniprot:P54813
Length = 723
Score = 464 (168.4 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 122/378 (32%), Positives = 196/378 (51%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
++E++ Y+ +P +Y G + +GVLL GPPGTGKTL AR +A E+ +PF +G+EF +
Sbjct: 260 VEEIVDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDE 319
Query: 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA R+ ++F A+ AP +F+DEID++ + P T L++++DG
Sbjct: 320 VLVGQGARRVRDLFDKAKARAPCIIFIDEIDSVGSKRVSNSIHPYANQTINQLLSEMDG- 378
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
F+ + +I I ATNR D+LD +RPGR D R+ + PD RV IF+ + +
Sbjct: 379 --------FTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRVDIFNFYLS 430
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ ++ + L + GF+GADI N+VN++ + + ++ + + D+ L
Sbjct: 431 KIVHSGGIDPKVLAKGSTGFTGADIENMVNQAALKAATDNAVEVTMAYLDEARDRVL--- 487
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPR--FDWHAFSQLLPGGKETA 477
MG T + E R A HEAGH L L+ + H + ++P G+
Sbjct: 488 MGPARTGG------RIPDEEANRNTAYHEAGH-TLVSLYTKDATPLHKVT-IIPRGQSLG 539
Query: 478 ISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAR 536
+ P +D+ T + + V GGR AE L+FGDD VT G DDL K T++A
Sbjct: 540 HTAMLPEKDSYQ---LTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAV 596
Query: 537 EMV-ISPQNARLGLAGLT 553
+MV + + ++GL T
Sbjct: 597 QMVKVFGMSDKVGLRDFT 614
Score = 54 (24.1 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 159 PVGYVSDTKSMYKEVVLGGDV--WDLLD-ELMIYMGNPMQYYERGVQFVRGVLLSGPPGT 215
P+ Y S+ + K+ G V W+ + +L N + Y G FV+G+L +G G
Sbjct: 131 PLTYFSELLAGKKQKTSEGGVEKWNQYESDLKKLPENQQRTYTDG--FVKGLLSNGVSGA 188
Query: 216 GK 217
GK
Sbjct: 189 GK 190
>ASPGD|ASPL0000072959 [details] [associations]
symbol:AN4557 species:162425 "Emericella nidulans"
[GO:0097002 "mitochondrial inner boundary membrane" evidence=IEA]
[GO:0005745 "m-AAA complex" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0006461 "protein
complex assembly" evidence=IEA] [GO:0006465 "signal peptide
processing" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 OMA:LYRFVTT MEROPS:M41.002 OrthoDB:EOG4J14HG
EMBL:BN001303 EMBL:AACD01000078 RefSeq:XP_662161.1
ProteinModelPortal:Q5B4H3 SMR:Q5B4H3 STRING:Q5B4H3
EnsemblFungi:CADANIAT00005881 GeneID:2872358 KEGG:ani:AN4557.2
Uniprot:Q5B4H3
Length = 883
Score = 482 (174.7 bits), Expect = 5.1e-47, Sum P(2) = 5.1e-47
Identities = 127/386 (32%), Positives = 199/386 (51%)
Query: 164 SDTKSMYKEVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFAR 222
+D K + +V G D + + E + ++ +P ++ + G + RG +LSGPPGTGKTL A+
Sbjct: 395 TDVKIKFSDVA-GMDEAKVEIMEFVSFLKSPERFQKLGAKIPRGAILSGPPGTGKTLLAK 453
Query: 223 TLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIA-GRHAR 280
A ESG+PF SG+EF + G +R+ ++F+ AR+N P +F+DEIDAI R A+
Sbjct: 454 ATAGESGVPFFSVSGSEFVEMFVGVGPSRVRDLFANARKNTPCIIFIDEIDAIGKSRSAK 513
Query: 281 K----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336
+ R +T ++ ++DG F+ V+ + TNRPD LD +RPGR
Sbjct: 514 NFSGGNDERESTLNQILTEMDG---------FNTSDQVVVLAGTNRPDVLDKALMRPGRF 564
Query: 337 DRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIM 394
DR + I P R QIF VH ED+++ L T GF+GADI N VNE+ ++
Sbjct: 565 DRHISIDRPTMDGRKQIFRVHLKKIVTKEDMDYLTGRLSALTPGFAGADIANCVNEAALV 624
Query: 395 SVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 454
+ R+ + + +++ ++ G+ +K +S E+KR +A HEAGH +
Sbjct: 625 AARENAESVTMKHFERAIER-VVGGL---------EKKSLVLSPEEKRTVAYHEAGHAIC 674
Query: 455 AHLFPRFDWHAFSQLLPGGKET-AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAER 513
F D ++P G+ + + P D T + +M + GGR +E
Sbjct: 675 GWYFRWADPLLKVSIIPRGQGALGYAQYLPANG--DTYLMTANQMMDRMAMTLGGRVSEE 732
Query: 514 LVFGDDVTDGGKDDLEKITKIAREMV 539
L F D VT G DD K+T++A MV
Sbjct: 733 LHF-DTVTSGASDDFNKVTRLATAMV 757
Score = 43 (20.2 bits), Expect = 5.1e-47, Sum P(2) = 5.1e-47
Identities = 20/82 (24%), Positives = 33/82 (40%)
Query: 6 KSLRKDMVEKVTETQGTRALW------IAKRWWRYRPKLPYTYFLEKLDSSEVAAVVFTE 59
K L K +VE++T T TR +A+ + P Y+ + S E +
Sbjct: 264 KFLDKGLVERLTVTNRTRVRVELNRDAVARTYPDSPAASPNFYYYFTVGSVESFERKLDQ 323
Query: 60 DLKRLYVTMKEGFPLEYVVDIP 81
L + E P+ YV ++P
Sbjct: 324 AQFELGIPTSERIPVSYVDEVP 345
>UNIPROTKB|F1RVK1 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008283 "cell proliferation" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0005743
GO:GO:0008283 GO:GO:0004222 GO:GO:0006515 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 GeneTree:ENSGT00550000074836
OMA:HTSHVSA EMBL:FP016148 Ensembl:ENSSSCT00000012110 Uniprot:F1RVK1
Length = 768
Score = 496 (179.7 bits), Expect = 5.8e-47, P = 5.8e-47
Identities = 127/372 (34%), Positives = 197/372 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 346 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 405
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 406 MFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 465
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 466 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLN 516
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 517 KIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL--- 573
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++P G
Sbjct: 574 MG-----PERRSVE--IDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 626
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D ++ T L QM V+ GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 627 SLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM 683
Query: 539 VIS-PQNARLGL 549
V + +LG+
Sbjct: 684 VTKFGMSEKLGV 695
>UNIPROTKB|Q96TA2 [details] [associations]
symbol:YME1L1 "ATP-dependent zinc metalloprotease YME1L1"
species:9606 "Homo sapiens" [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0006515 "misfolded or incompletely synthesized
protein catabolic process" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0005524 GO:GO:0016020 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0006508 GO:GO:0004222
EMBL:CH471072 EMBL:AL160291 GO:GO:0030163 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
EMBL:AL162272 HOGENOM:HOG000217276 UniGene:Hs.74647 KO:K08955
EMBL:AF151782 EMBL:AJ132637 EMBL:AY358484 EMBL:AK297973
EMBL:BC023507 EMBL:BC024032 IPI:IPI00045946 IPI:IPI00099529
RefSeq:NP_001240795.1 RefSeq:NP_055078.1 RefSeq:NP_647473.1
UniGene:Hs.499145 ProteinModelPortal:Q96TA2 SMR:Q96TA2
IntAct:Q96TA2 STRING:Q96TA2 MEROPS:M41.A20 PhosphoSite:Q96TA2
DMDM:46397258 PaxDb:Q96TA2 PRIDE:Q96TA2 Ensembl:ENST00000326799
Ensembl:ENST00000375972 Ensembl:ENST00000376016 GeneID:10730
KEGG:hsa:10730 UCSC:uc001iti.3 UCSC:uc001itj.3 CTD:10730
GeneCards:GC10M027439 H-InvDB:HIX0127242 HGNC:HGNC:12843 MIM:607472
neXtProt:NX_Q96TA2 PharmGKB:PA37434 HOVERGEN:HBG057127
InParanoid:Q96TA2 OMA:HTSHVSA PhylomeDB:Q96TA2 ChiTaRS:YME1L1
GenomeRNAi:10730 NextBio:40734 ArrayExpress:Q96TA2 Bgee:Q96TA2
CleanEx:HS_YME1L1 Genevestigator:Q96TA2 GermOnline:ENSG00000136758
Uniprot:Q96TA2
Length = 773
Score = 495 (179.3 bits), Expect = 7.9e-47, P = 7.9e-47
Identities = 127/372 (34%), Positives = 197/372 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 351 LQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 410
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 411 MFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 470
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 471 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLN 521
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 522 KIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL--- 578
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++P G
Sbjct: 579 MG-----PERRSVE--IDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 631
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D ++ T L QM V+ GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 632 SLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM 688
Query: 539 VIS-PQNARLGL 549
V + +LG+
Sbjct: 689 VTKFGMSEKLGV 700
>ZFIN|ZDB-GENE-070410-25 [details] [associations]
symbol:yme1l1b "YME1-like 1b" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-070410-25 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 KO:K08955
MEROPS:M41.A20 HOVERGEN:HBG057127 EMBL:BC139529 IPI:IPI00614293
RefSeq:NP_001082983.1 UniGene:Dr.148676 ProteinModelPortal:A4QNU8
SMR:A4QNU8 STRING:A4QNU8 GeneID:557907 KEGG:dre:557907 CTD:557907
InParanoid:A4QNU8 NextBio:20882221 Uniprot:A4QNU8
Length = 722
Score = 492 (178.3 bits), Expect = 8.9e-47, P = 8.9e-47
Identities = 124/361 (34%), Positives = 190/361 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 300 LQEVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 359
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 360 MFVGVGASRIRNLFREAKGNAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 419
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 420 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLK 470
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
++ V E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 471 KIKVDSAVEAEVIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFAKDKIL--- 527
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + K + A HE+GH ++A+ + ++P G
Sbjct: 528 MG-----PERRSAE--IDKRNKEITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 580
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D + T L QM V+ GGR AE L+FG++ +T G D + TKIA+ M
Sbjct: 581 SMLPENDRWSE---TRAQLLAQMDVSMGGRVAEELIFGNENITTGASSDFDSATKIAKMM 637
Query: 539 V 539
V
Sbjct: 638 V 638
>GENEDB_PFALCIPARUM|PFL1925w [details] [associations]
symbol:PFL1925w "cell division protein FtsH,
putative" species:5833 "Plasmodium falciparum" [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
ProtClustDB:CLSZ2433071 Uniprot:Q8I526
Length = 880
Score = 497 (180.0 bits), Expect = 9.8e-47, P = 9.8e-47
Identities = 135/401 (33%), Positives = 220/401 (54%)
Query: 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230
E + G D L L E++ ++ N +Y+E G + +GVLL GPPG+GKT+ AR +A E+ +
Sbjct: 149 EEIAGIDESKLELLEVVDFIKNREKYHEMGARMPKGVLLVGPPGSGKTMLARAVATEANV 208
Query: 231 PFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR---RR 286
P+++ SG EF + GA RI ++F+ AR AP+ VF+DEIDAI G+ + +R
Sbjct: 209 PYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGAGQR 268
Query: 287 A---TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
T L+ ++DG FS ++ I ATNR D LD +RPGR DR +Y+
Sbjct: 269 EHDQTLNQLLVEMDG---------FSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVP 319
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEEL--VFR-TVGFSGADIRNLVNESGIMSVRKGH 400
LPD R +I +++ K++ D+ E++ + R T GFSGAD+ N+VNE+ I++ R
Sbjct: 320 LPDINGRKKILEIYI--KKIKSDLKLEDIEKIARLTPGFSGADLENVVNEATILATRNNK 377
Query: 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAH-LFP 459
S + ++ + DK MG E++ QS ++R+ A HEAGH ++A+ L P
Sbjct: 378 SLVTINELYEARDKV---SMG-----PERKSLRQSD--HQRRITAYHEAGHAIVAYFLQP 427
Query: 460 RFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTF-GYLKMQMVVAHGGRCAERLVFG- 517
+ D + ++ G ++ Y + +D + F ++ ++ V GGR AE +VFG
Sbjct: 428 KTDPIHKATIISRGN----ALGYVEQIPVDDRHNYFKSQMEAKLAVCMGGRTAEEIVFGK 483
Query: 518 DDVTDGGKDDLEKITKIAREMVIS-PQNARLGLAGLTRRVG 557
+ + G D+ + T+IA +MV + +LG +R+G
Sbjct: 484 SETSSGASSDISRATEIAYKMVTEWGMSDKLGPLNYKKRMG 524
>UNIPROTKB|Q8I526 [details] [associations]
symbol:PFL1925w "Cell division protein FtsH, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
ProtClustDB:CLSZ2433071 Uniprot:Q8I526
Length = 880
Score = 497 (180.0 bits), Expect = 9.8e-47, P = 9.8e-47
Identities = 135/401 (33%), Positives = 220/401 (54%)
Query: 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230
E + G D L L E++ ++ N +Y+E G + +GVLL GPPG+GKT+ AR +A E+ +
Sbjct: 149 EEIAGIDESKLELLEVVDFIKNREKYHEMGARMPKGVLLVGPPGSGKTMLARAVATEANV 208
Query: 231 PFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR---RR 286
P+++ SG EF + GA RI ++F+ AR AP+ VF+DEIDAI G+ + +R
Sbjct: 209 PYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGAGQR 268
Query: 287 A---TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
T L+ ++DG FS ++ I ATNR D LD +RPGR DR +Y+
Sbjct: 269 EHDQTLNQLLVEMDG---------FSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVP 319
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEEL--VFR-TVGFSGADIRNLVNESGIMSVRKGH 400
LPD R +I +++ K++ D+ E++ + R T GFSGAD+ N+VNE+ I++ R
Sbjct: 320 LPDINGRKKILEIYI--KKIKSDLKLEDIEKIARLTPGFSGADLENVVNEATILATRNNK 377
Query: 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAH-LFP 459
S + ++ + DK MG E++ QS ++R+ A HEAGH ++A+ L P
Sbjct: 378 SLVTINELYEARDKV---SMG-----PERKSLRQSD--HQRRITAYHEAGHAIVAYFLQP 427
Query: 460 RFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTF-GYLKMQMVVAHGGRCAERLVFG- 517
+ D + ++ G ++ Y + +D + F ++ ++ V GGR AE +VFG
Sbjct: 428 KTDPIHKATIISRGN----ALGYVEQIPVDDRHNYFKSQMEAKLAVCMGGRTAEEIVFGK 483
Query: 518 DDVTDGGKDDLEKITKIAREMVIS-PQNARLGLAGLTRRVG 557
+ + G D+ + T+IA +MV + +LG +R+G
Sbjct: 484 SETSSGASSDISRATEIAYKMVTEWGMSDKLGPLNYKKRMG 524
>UNIPROTKB|A6QR12 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008283 "cell proliferation" evidence=ISS] [GO:0005743
"mitochondrial inner membrane" evidence=ISS] [GO:0007005
"mitochondrion organization" evidence=ISS] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0005743
GO:GO:0008283 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005 HOGENOM:HOG000217276
GeneTree:ENSGT00550000074836 KO:K08955 MEROPS:M41.A20 CTD:10730
HOVERGEN:HBG057127 OMA:HTSHVSA OrthoDB:EOG4KH2TK EMBL:DAAA02035354
EMBL:BC150071 IPI:IPI00866889 RefSeq:NP_001095320.1 UniGene:Bt.1786
SMR:A6QR12 STRING:A6QR12 Ensembl:ENSBTAT00000021868 GeneID:505118
KEGG:bta:505118 InParanoid:A6QR12 NextBio:20866987 Uniprot:A6QR12
Length = 717
Score = 486 (176.1 bits), Expect = 4.1e-46, P = 4.1e-46
Identities = 127/374 (33%), Positives = 197/374 (52%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 293 LQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 352
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 353 MFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 412
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN P+ LD +RPGR D ++ + PD K R +I +
Sbjct: 413 KPNEG---------VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLN 463
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 464 KIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL--- 520
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++P G
Sbjct: 521 MG-----PERRSVE--IDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHV 573
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDG--GKDDLEKITKIAR 536
P D ++ T L QM V+ GGR AE L+FG D +T G D + TKIA+
Sbjct: 574 SLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGSDHITTGYCASSDFDNATKIAK 630
Query: 537 EMVIS-PQNARLGL 549
MV + +LG+
Sbjct: 631 RMVTKFGMSEKLGV 644
>ZFIN|ZDB-GENE-091113-41 [details] [associations]
symbol:yme1l1a "YME1-like 1a" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-091113-41 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 GO:GO:0006508
GO:GO:0004222 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 EMBL:CU138525 IPI:IPI00962165
Ensembl:ENSDART00000110185 Uniprot:E7EZJ5
Length = 729
Score = 486 (176.1 bits), Expect = 4.9e-46, P = 4.9e-46
Identities = 123/361 (34%), Positives = 192/361 (53%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L +++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 307 LQDVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 366
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ +AP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 367 MFVGVGASRIRNLFKEAKASAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 426
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G VI I ATN + LD VRPGR D ++ + +PD K R +I + +
Sbjct: 427 KPNEG---------VIVIGATNFAEALDNALVRPGRFDMQVTVPIPDVKGRTEILEWYLK 477
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
++ ++ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 478 KIKVDSAIDAEIIARGTVGFSGAELENLVNQAALKAAADGKDLVTMKELKFAKDKIL--- 534
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + K + A HE+GH ++A+ + ++P G
Sbjct: 535 MG-----PERRSVE--IDKRNKTITAYHESGHAIVAYYTKDAMPINKATIMPRGPSLGHV 587
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D + T L QM V+ GGR AE LVFG+D +T G D + TKIA+ M
Sbjct: 588 SLLPENDRWSE---TRAQLLAQMDVSMGGRVAEELVFGNDQITSGASSDFDGATKIAQMM 644
Query: 539 V 539
V
Sbjct: 645 V 645
>CGD|CAL0004443 [details] [associations]
symbol:orf19.2057 species:5476 "Candida albicans" [GO:0005745
"m-AAA complex" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 CGD:CAL0004443 GO:GO:0016021
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 EMBL:AACQ01000031 EMBL:AACQ01000030
MEROPS:M41.003 RefSeq:XP_719505.1 RefSeq:XP_719629.1
ProteinModelPortal:Q5AD10 SMR:Q5AD10 GeneID:3638753 GeneID:3638884
KEGG:cal:CaO19.2057 KEGG:cal:CaO19.9604 Uniprot:Q5AD10
Length = 846
Score = 489 (177.2 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 143/448 (31%), Positives = 228/448 (50%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
+D K +K+V + + E + ++ NP +Y + G + RG +LSGPPGTGKTL A+
Sbjct: 366 TDVKIKFKDVAGMAEAKQEVMEFVKFLQNPEKYEKLGAKIPRGAILSGPPGTGKTLLAKA 425
Query: 224 LAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-- 280
A E+G+PF SG+EF + GA+R+ ++F AR NAP+ VFVDEIDAI + ++
Sbjct: 426 TAGEAGVPFYSVSGSEFVEMFVGVGASRVRDLFKTARENAPSIVFVDEIDAIGKQRSKGN 485
Query: 281 ---KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337
+ R T L+ ++DG F V+ + TNRPD LD +RPGR D
Sbjct: 486 ATGANDERETTLNQLLVEMDG---------FDTSDHVVVLAGTNRPDILDRALMRPGRFD 536
Query: 338 RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFE---ELVFRTVGFSGADIRNLVNESGIM 394
R ++I P+ R +IFDVH L +D++ + L T GFSGADI N+ NE+ ++
Sbjct: 537 RHVHIDNPELLGRKEIFDVHLQKITLQKDIDPDLSGRLAALTPGFSGADIANVCNEAALI 596
Query: 395 SVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 454
+ R + + +++ + G GV E++ K ++ E+++++A HEAGH +
Sbjct: 597 AARYNAEFVTLRHFELAIERVI--G-GV----EKKSKL---LNPEEQKIVAYHEAGHAIC 646
Query: 455 AHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERL 514
++P G + A+ Y + DQ + L +M++ GGR +E L
Sbjct: 647 GWYLKYAHPLLKVSIIPRG-QGALG--YAQYLPPDQYLMSTLQLYDRMIMTLGGRVSEEL 703
Query: 515 VFGDDVTDGGKDDLEKITKIAREMVIS-PQNARLGLAGL--TRRVGLLDRPDSSDGDLIK 571
F VT G DD +K+T IA+ MV+ + +G+ TR L +P S + I
Sbjct: 704 HFAS-VTSGAHDDFKKVTGIAQSMVLRFGMSKTVGMVNYYDTRSQDDLTKPFSDETSRII 762
Query: 572 YRWDDPQVIPTDMTLELSELFTRELTRV 599
+ Q I +D + +L T + V
Sbjct: 763 D--SEVQRIVSDCYQKCKQLLTEKSKEV 788
>SGD|S000000819 [details] [associations]
symbol:AFG3 "Component, with Yta12p, of the mitochondrial
inner membrane m-AAA pro" species:4932 "Saccharomyces cerevisiae"
[GO:0016887 "ATPase activity" evidence=ISS;IMP;IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0031966 "mitochondrial
membrane" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA;IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA;IMP]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IDA] [GO:0001302 "replicative cell
aging" evidence=IMP] [GO:0002181 "cytoplasmic translation"
evidence=IMP] [GO:0045041 "protein import into mitochondrial
intermembrane space" evidence=TAS] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006461 "protein complex assembly"
evidence=IMP] [GO:0006465 "signal peptide processing" evidence=IMP]
[GO:0005745 "m-AAA complex" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 SGD:S000000819
GO:GO:0005524 GO:GO:0006461 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0008237 GO:GO:0001302 GO:GO:0004222
GO:GO:0016887 EMBL:BK006939 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
TIGRFAMs:TIGR01241 OMA:LYRFVTT EMBL:X81066 EMBL:X76643 EMBL:U18778
PIR:S46611 RefSeq:NP_010933.1 ProteinModelPortal:P39925 SMR:P39925
DIP:DIP-802N IntAct:P39925 MINT:MINT-563722 STRING:P39925
MEROPS:M41.002 PaxDb:P39925 PeptideAtlas:P39925
EnsemblFungi:YER017C GeneID:856737 KEGG:sce:YER017C CYGD:YER017c
OrthoDB:EOG4J14HG NextBio:982861 Genevestigator:P39925
GermOnline:YER017C GO:GO:0005745 GO:GO:0097002 GO:GO:0002181
GO:GO:0045041 GO:GO:0006465 Uniprot:P39925
Length = 761
Score = 485 (175.8 bits), Expect = 9.2e-46, P = 9.2e-46
Identities = 145/459 (31%), Positives = 229/459 (49%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
+D K +K V + + E + ++ NP +Y + G + RG +LSGPPGTGKTL A+
Sbjct: 281 TDIKISFKNVAGCDEAKQEIMEFVHFLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKA 340
Query: 224 LAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-- 280
A E+ +PF+ SG+EF + GA+R+ ++F+ AR AP+ +F+DEIDAI +
Sbjct: 341 TAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGG 400
Query: 281 ----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336
+ R AT L+ ++DG F+ V+ + TNRPD LD +RPGR
Sbjct: 401 ALGGANDEREATLNQLLVEMDG---------FTTSDQVVVLAGTNRPDVLDNALMRPGRF 451
Query: 337 DRRLYIGLPDAKQRVQIFDVH----SAGKQLAEDVN--FEELVFRTVGFSGADIRNLVNE 390
DR + I PD R QI+ VH + L +D+N +L T GF+GADI N NE
Sbjct: 452 DRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNE 511
Query: 391 SGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAG 450
+ +++ R I +++ ++ G+ +K + +S E+KR +A HEAG
Sbjct: 512 AALIAARHNDPYITIHHFEQAIER-VIAGL---------EKKTRVLSKEEKRSVAYHEAG 561
Query: 451 HIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRC 510
H V D ++P G + A+ Y + DQ + + +M++A GGR
Sbjct: 562 HAVCGWFLKYADPLLKVSIIPRG-QGALG--YAQYLPPDQYLISEEQFRHRMIMALGGRV 618
Query: 511 AERLVFGDDVTDGGKDDLEKITKIAREMVIS-PQNARLGLAGLTRRVG--LLDRPDSSDG 567
+E L F VT G DD +K+T++A MV S + ++G + G +++P S+
Sbjct: 619 SEELHF-PSVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFDQNDGNFKVNKPFSNK- 676
Query: 568 DLIKYRWDDPQV--IPTDMTLELSELFTRELTRVIIKKK 604
R D +V I D +EL T+ L +V + K
Sbjct: 677 ---TARTIDLEVKSIVDDAHRACTELLTKNLDKVDLVAK 712
>UNIPROTKB|F1NXP0 [details] [associations]
symbol:SPG7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=IEA] [GO:0008089 "anterograde axon cargo
transport" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 OMA:MMDHEAK EMBL:AADN02054132
IPI:IPI00601320 Ensembl:ENSGALT00000010016 Uniprot:F1NXP0
Length = 768
Score = 485 (175.8 bits), Expect = 9.8e-46, P = 9.8e-46
Identities = 159/558 (28%), Positives = 277/558 (49%)
Query: 38 LPYTYFL-EKLDSSEVAAV-VFTE-DLKRLYVTMKEGFP-------LEYVVDIP-LDPYL 86
+ + YF+ E L EV + V E D+ +Y+ G P L Y + + +D +
Sbjct: 138 ISWNYFINEMLSKGEVQRIEVVPESDIVEIYLH-PGGTPHGQVNVTLLYTMRVANIDKFE 196
Query: 87 FETIASSGAEVDLLQKRQI-----H--YFLKVLIALLPGILILSLIRETVMLLHITSSRL 139
E + ++ E+++ ++ +I H ++ +I+LL ++ +S++ L+ +
Sbjct: 197 -EKLRAAEDELNIDERERIPVSYKHPGFYGNDVISLLVTLVAVSMLWSIFRLIRVAGRAG 255
Query: 140 LYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYER 199
+ +NQL MA F + G S +K+V + + E + Y+ NP +Y +
Sbjct: 256 GFNAFNQL-KMA---RFTIVDGK-SGKGIGFKDVAGMHEAKMEVKEFVDYLKNPDRYLQL 310
Query: 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIA 258
G + +G LL GPPG GKTL A+ +A E+ +PF+ +G+EF + GAAR+ +F A
Sbjct: 311 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVIGGLGAARVRSLFREA 370
Query: 259 RRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313
+ AP V++DEIDA+ + + + T L+ ++DG
Sbjct: 371 QARAPCIVYIDEIDAVGKKRSTNVSGFANAEEEQTLNQLLVEMDG---------MGTTDH 421
Query: 314 VIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EE 371
VI + +TNR D LD +RPGR+DR ++I LP ++R +IF+ H G +L +D +F +
Sbjct: 422 VIVLASTNRADVLDNALMRPGRLDRHIFIDLPTLQERREIFEQHLKGLKLIQDASFYSQH 481
Query: 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQK 431
L T GFSGADI N+ NE+ + + R+GH I + +++ ++ G K
Sbjct: 482 LAELTPGFSGADIANICNEAALHAAREGHKSIDTFNFEYAVER-VIAGTA---------K 531
Query: 432 CEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET-AISVFYPREDTIDQ 490
+ +S E+++++A HE+GH ++ L + + P + PRE +
Sbjct: 532 RNKILSPEERKVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFAQILPREQYL-- 589
Query: 491 GYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV----ISPQNAR 546
+T L+ +M +A GGR +E + F + VT G +DDL+++TKIA MV + P +
Sbjct: 590 -FTKEQLLE-RMCMALGGRVSEAITF-NKVTTGAQDDLKRVTKIAYSMVKQYGMVPSIGQ 646
Query: 547 LGLAGLTRRVGLLDRPDS 564
+ VG+ RP S
Sbjct: 647 ISFPDGESTVGIGRRPFS 664
>UNIPROTKB|I3LLQ8 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0006508 GO:GO:0040014 GO:GO:0004222 GO:GO:0042552
GO:GO:0007409 GO:GO:0030163 GeneTree:ENSGT00530000063070
GO:GO:0017111 GO:GO:0042407 GO:GO:0008053 GO:GO:0034982
TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675
GO:GO:0060013 EMBL:FP565334 Ensembl:ENSSSCT00000025900
Uniprot:I3LLQ8
Length = 597
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 121/371 (32%), Positives = 195/371 (52%)
Query: 185 ELMIYMGNPMQYYERGVQFVR-GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243
E + ++ NP QY + G + + G +L+GPPGTGKTL A+ A E+ +PF+ SG+EF +
Sbjct: 113 EFVNFLKNPKQYQDLGAKIPKKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM 172
Query: 244 EKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER 302
G AR+ ++F++AR+NAP +F+DEIDA+ + R + ++ E + QL
Sbjct: 173 FVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQL-----L 227
Query: 303 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ 362
+D F+ V+ + TNRPD LD +RPGR DR+++IG PD K R IF VH +
Sbjct: 228 VEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLK 287
Query: 363 LAEDVNFEELVFR----TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLE 418
L + E+L + T GFSGAD+ N+ NE+ +++ R I Q+ +++ ++
Sbjct: 288 LDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIER-VIG 346
Query: 419 GMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAI 478
G+ +K Q + E+K+ +A HEAGH V D ++P GK
Sbjct: 347 GL---------EKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGY 397
Query: 479 SVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREM 538
+ + P+E + YT L +M + G C R +T G +DD K+T+ A
Sbjct: 398 AQYLPKEQYL---YTKEQLLD-RMCMTPGWPCGPRKSSFGRITTGAQDD-RKVTQSAYAQ 452
Query: 539 VIS-PQNARLG 548
++ N ++G
Sbjct: 453 IVQFGMNEKVG 463
>UNIPROTKB|F1NTK8 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 EMBL:AADN02000548 IPI:IPI00601077
Ensembl:ENSGALT00000012112 Uniprot:F1NTK8
Length = 712
Score = 478 (173.3 bits), Expect = 3.2e-45, P = 3.2e-45
Identities = 125/376 (33%), Positives = 195/376 (51%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 290 LQEVVEFLKNPHKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 349
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 350 MFVGVGASRIRSLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 409
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G V+ I ATN P+ LD +RPGR D ++ + PD + R +I +
Sbjct: 410 KPNEG---------VVIIGATNFPEALDNALIRPGRFDMQVTVPKPDVRGRTEILKWYLN 460
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 461 KIKYDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFSKDKIL--- 517
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++ G
Sbjct: 518 MG-----PERRSVE--IDEKNKTITAYHESGHAIIAYYTKDAMPINKATIMTRGTTLGHV 570
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D + T L QM V GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 571 SLLPENDRWSE---TRSQLLAQMDVCMGGRAAEELIFGSDHITTGASSDFDNATKIAKLM 627
Query: 539 VIS-PQNARLGLAGLT 553
V + +LG+ T
Sbjct: 628 VTRFGMSEKLGVMTYT 643
>UNIPROTKB|F1P519 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005743 GO:GO:0008283 GO:GO:0004222
GO:GO:0006515 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
GeneTree:ENSGT00550000074836 OMA:HTSHVSA EMBL:AADN02000548
IPI:IPI00822340 Ensembl:ENSGALT00000038444 Uniprot:F1P519
Length = 717
Score = 478 (173.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 125/376 (33%), Positives = 195/376 (51%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ NP ++ G + +G+LL GPPGTGKTL AR +A E+ +PF +ASG+EF +
Sbjct: 295 LQEVVEFLKNPHKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDE 354
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD--PRRRATFEALIAQLDGD 299
GA+RI +F A+ NAP +F+DE+D++ G+ P R T L+A++DG
Sbjct: 355 MFVGVGASRIRSLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF 414
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
K G V+ I ATN P+ LD +RPGR D ++ + PD + R +I +
Sbjct: 415 KPNEG---------VVIIGATNFPEALDNALIRPGRFDMQVTVPKPDVRGRTEILKWYLN 465
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ + V+ E + TVGFSGA++ NLVN++ + + G + +++ DK L
Sbjct: 466 KIKYDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFSKDKIL--- 522
Query: 420 MGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAIS 479
MG E++ E + + K + A HE+GH ++A+ + ++ G
Sbjct: 523 MG-----PERRSVE--IDEKNKTITAYHESGHAIIAYYTKDAMPINKATIMTRGTTLGHV 575
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREM 538
P D + T L QM V GGR AE L+FG D +T G D + TKIA+ M
Sbjct: 576 SLLPENDRWSE---TRSQLLAQMDVCMGGRAAEELIFGSDHITTGASSDFDNATKIAKLM 632
Query: 539 VIS-PQNARLGLAGLT 553
V + +LG+ T
Sbjct: 633 VTRFGMSEKLGVMTYT 648
>TAIR|locus:2075581 [details] [associations]
symbol:ftsh7 "FTSH protease 7" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
GO:GO:0009535 EMBL:AL133292 GO:GO:0004176 HOGENOM:HOG000217276
KO:K03798 EMBL:AY099737 EMBL:BT000368 IPI:IPI00522102 PIR:T45642
RefSeq:NP_566889.1 UniGene:At.43767 ProteinModelPortal:Q9SD67
SMR:Q9SD67 MEROPS:M41.A04 PaxDb:Q9SD67 PRIDE:Q9SD67
EnsemblPlants:AT3G47060.1 GeneID:823859 KEGG:ath:AT3G47060
GeneFarm:2514 TAIR:At3g47060 InParanoid:Q9SD67 OMA:SNQVQKV
PhylomeDB:Q9SD67 ProtClustDB:CLSN2689036 Genevestigator:Q9SD67
Uniprot:Q9SD67
Length = 802
Score = 461 (167.3 bits), Expect = 3.8e-45, Sum P(2) = 3.8e-45
Identities = 145/480 (30%), Positives = 240/480 (50%)
Query: 87 FETIASSGAEVDLLQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQ 146
+E + + E +KR +F LIAL ++ LIR V ++ +L +K
Sbjct: 250 YEKMLGNNVEFGSPEKRSGGFFNSALIALFYIAVLAGLIRFPVSFSTSSTGQLRTRKAGG 309
Query: 147 LFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRG 206
+ + G + T + +V + + L+E++ ++ NP +Y G + RG
Sbjct: 310 ------PDGGKVSGGGETIT---FADVAGVDEAKEELEEIVEFLRNPEKYVRLGARPPRG 360
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAF 265
VLL G PGTGKTL A+ +A E+ +PF+ S +EF + GA+R+ ++F+ A++ AP+
Sbjct: 361 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 420
Query: 266 VFVDEIDAIA-GRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320
+F+DEIDA+A R + + R T L+ ++DG F AVI + AT
Sbjct: 421 IFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGAT 471
Query: 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVG 378
NR D LD RPGR DR + + PD R I VH + K+L +DVN + T G
Sbjct: 472 NRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTG 531
Query: 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSF 438
F+GAD+ NLVNE+ +++ RK + +++ D + +++ + G+ +K +
Sbjct: 532 FTGADLANLVNEAALLAGRKNKTNVEKIDFIQAVERSIA---GI-------EKKSARLKG 581
Query: 439 EKKRLLAVHEAGHIVL----AHLF---PRFDWHAFSQLLP--GGKETAISVFYPREDTID 489
+K ++A HEAGH V+ A+L PR + S +LP GG A+ Y + D
Sbjct: 582 NEKAVVARHEAGHAVVGTAVANLLTGQPRVE--KLS-ILPRTGG---ALGFTYIPPTSED 635
Query: 490 QGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVIS-PQNARLG 548
+ L ++V GGR AE +V+ ++ G DD+ + T +A + V N ++G
Sbjct: 636 RYLLFIDELLGRLVTLLGGRAAEEVVYSGRISTGAFDDIRRATDMAYKAVAEYGLNQKIG 695
Score = 44 (20.5 bits), Expect = 3.8e-45, Sum P(2) = 3.8e-45
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 38 LPYTYFLEKLDSSEVAAV 55
+PY+ FL K++S++V V
Sbjct: 177 VPYSEFLSKVNSNQVQKV 194
>TAIR|locus:2138146 [details] [associations]
symbol:FtsHi1 "FTSH inactive protease 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0008237 "metallopeptidase
activity" evidence=ISS] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0007020 "microtubule nucleation"
evidence=RCA] [GO:0010020 "chloroplast fission" evidence=IMP]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
SMART:SM00382 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0051301 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
eggNOG:COG0465 GO:GO:0017111 GO:GO:0010020 EMBL:AC002343
EMBL:AL078468 EMBL:AL161560 HSSP:Q9LCZ4 IPI:IPI00537043 PIR:T08913
RefSeq:NP_567691.1 UniGene:At.3392 ProteinModelPortal:O22993
SMR:O22993 PaxDb:O22993 PRIDE:O22993 EnsemblPlants:AT4G23940.1
GeneID:828494 KEGG:ath:AT4G23940 TAIR:At4g23940
HOGENOM:HOG000029491 InParanoid:O22993 OMA:QMAGSEF PhylomeDB:O22993
ProtClustDB:CLSN2689578 ArrayExpress:O22993 Genevestigator:O22993
Uniprot:O22993
Length = 946
Score = 470 (170.5 bits), Expect = 4.4e-45, Sum P(2) = 4.4e-45
Identities = 130/431 (30%), Positives = 227/431 (52%)
Query: 121 ILSLIRETVMLLHITSSRLL--YKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGD 178
IL ++ V+L+ T SR ++K++ +A++++ T + +V +
Sbjct: 379 ILLVVMTMVLLVRFTLSRRPKNFRKWDLWQGIAFSQSKA-EARVDGSTGVKFADVAGIDE 437
Query: 179 VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238
D L EL+ Y+ NP + + G++ GVLL GPPG GKTL A+ +A E+G+PF +G+
Sbjct: 438 AVDELQELVKYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 497
Query: 239 EFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297
EF + G+ARI ++F A+ N P+ +F+DEIDA+A R+ + + L
Sbjct: 498 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA---TRRQGIFKENSDQLYNAAT 554
Query: 298 GDKERT------GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
++E T +D F + VIF+ ATNR D LD +RPGR DR++ + P+AK R+
Sbjct: 555 QERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRL 614
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411
I +H++ ++++ V+ G+SGA + LV E+ +++VRK H+ I Q D+ D
Sbjct: 615 DILKIHASKVKMSDSVDLSSYASNLPGWSGAKLAQLVQEAALVAVRKTHNSILQSDMDDA 674
Query: 412 LDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLP 471
+D+ + + L Q +C ++ + E + V H++L + + + ++P
Sbjct: 675 VDRLTVGPTRIGLELGHQGQCRRATT-E----VGVAITSHLLLRYENAKIERCDRVSIIP 729
Query: 472 GGKETAISVFYPREDTIDQGYTTFGYLKM---QMVVAHGGRCAERLVFGDDVTDGGKDDL 528
G +T V + R D D+ Y FG L ++ V GGR AE +++G D + D L
Sbjct: 730 RG-QTLSQVVFHRLD--DESYM-FGRLPQLLHRLQVLLGGRAAEEVIYGSDTSKASVDYL 785
Query: 529 EKITKIAREMV 539
+ +AR+++
Sbjct: 786 SDASWLARKIL 796
Score = 39 (18.8 bits), Expect = 4.4e-45, Sum P(2) = 4.4e-45
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 47 LDSSEVAAVVFTEDLKRLYVTMKE 70
L S EV+ V +T + V +KE
Sbjct: 196 LTSKEVSGVSYTSGYRGFIVDLKE 219
>SGD|S000006228 [details] [associations]
symbol:YME1 "Catalytic subunit of the mitochondrial inner
membrane i-AAA protease" species:4932 "Saccharomyces cerevisiae"
[GO:0006457 "protein folding" evidence=IMP] [GO:0005743
"mitochondrial inner membrane" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=IGI;IMP]
[GO:0006515 "misfolded or incompletely synthesized protein
catabolic process" evidence=IMP] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0031942 "i-AAA complex"
evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
SGD:S000006228 GO:GO:0005524 GO:GO:0006457 GO:GO:0046872
GO:GO:0004222 EMBL:Z71255 EMBL:BK006949 GO:GO:0006515
eggNOG:COG0465 TIGRFAMs:TIGR01241 EMBL:Z49274 GO:GO:0004176
HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942
GeneTree:ENSGT00550000074836 KO:K08955 OrthoDB:EOG4FR40W
EMBL:L14616 EMBL:X81067 EMBL:D16332 PIR:S54498 RefSeq:NP_015349.1
ProteinModelPortal:P32795 SMR:P32795 IntAct:P32795 STRING:P32795
PaxDb:P32795 PeptideAtlas:P32795 EnsemblFungi:YPR024W GeneID:856135
KEGG:sce:YPR024W CYGD:YPR024w OMA:SEFDEVY NextBio:981236
Genevestigator:P32795 GermOnline:YPR024W Uniprot:P32795
Length = 747
Score = 477 (173.0 bits), Expect = 6.3e-45, P = 6.3e-45
Identities = 124/360 (34%), Positives = 187/360 (51%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L+E++ ++ +P +Y G + +GVLL+GPPGTGKTL AR A E+G+ F F SG+EF +
Sbjct: 293 LEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDE 352
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDK 300
GA RI ++F+ AR APA +F+DE+DAI G+ KD + T L+ +LDG
Sbjct: 353 VYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDG-- 410
Query: 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360
FS +I I ATN P+ LD RPGR D+ + + LPD + R I H
Sbjct: 411 -------FSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKK 463
Query: 361 KQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGM 420
LA++V+ + T G SGA++ NLVN++ + + +K + DK L M
Sbjct: 464 ITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKIL---M 520
Query: 421 GVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISV 480
G ++ ++ ++ A HEAGH ++A + +LP G+ I+
Sbjct: 521 GA-------ERKTMVLTDAARKATAFHEAGHAIMAKYTNGATPLYKATILPRGRALGITF 573
Query: 481 FYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMV 539
P D +D T + ++ V GG+ AE L++G D+ T G DL+ T AR MV
Sbjct: 574 QLPEMDKVD---ITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMV 630
>FB|FBgn0024992 [details] [associations]
symbol:CG2658 species:7227 "Drosophila melanogaster"
[GO:0006508 "proteolysis" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9LCZ4
HOGENOM:HOG000226301 MEROPS:M41.A12 EMBL:AL023874
ProteinModelPortal:O76867 SMR:O76867 PaxDb:O76867 PRIDE:O76867
FlyBase:FBgn0024992 InParanoid:O76867 OrthoDB:EOG4V6WXK
ArrayExpress:O76867 Bgee:O76867 Uniprot:O76867
Length = 819
Score = 476 (172.6 bits), Expect = 1.4e-44, P = 1.4e-44
Identities = 128/430 (29%), Positives = 228/430 (53%)
Query: 119 ILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGD 178
+L+ +L+ + S L +NQ M A+ F L + ++++V +
Sbjct: 293 LLVCALLMSIATRMKSIKSPLSMDSFNQ---MGRAK-FTLVDPFDGGRGVLFRDVAGLSE 348
Query: 179 VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238
+ E + Y+ +P +Y G + RG LL GPPG GKTL A+ +A E+ +PF+ +G+
Sbjct: 349 AKQEVKEFVDYLKSPEKYQRLGAKVPRGALLLGPPGCGKTLLAKAVATEAQVPFLSMNGS 408
Query: 239 EFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297
EF + GAAR+ ++F ++ AP +++DEIDAI R+R+ E++
Sbjct: 409 EFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAIG--------RQRSGTESMGQGSS 460
Query: 298 GDKERT------GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
G+ E+T +D + ++ V+ + +TNR D LD +RPGR DR + I LP +R
Sbjct: 461 GESEQTLNQLLVEMDGMATKEGVLMLASTNRADILDKALLRPGRFDRHILIDLPTLAERK 520
Query: 352 QIFDVHSAGKQL-AEDVNFEELVFR-TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
+IF+ H + +L + F + + R T GFSGADI N+ NE+ + + R ++ +++
Sbjct: 521 EIFEKHLSSVKLESPPTTFSQRLARLTPGFSGADIANVCNEAALHAARNTQMEVSSKNLE 580
Query: 410 DVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQL 469
+++ L+ G TE K ++S +++++A HE+GH ++ + P D +
Sbjct: 581 YAVER-LVGG-----TE----KRSHALSLAERKVIAYHESGHALVGWMLPNSDILLKVTI 630
Query: 470 LPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLE 529
+P T++++ + + +Q + L +M +A GGR AE LVF + +T G ++DLE
Sbjct: 631 VP---RTSLALGFAQYTPSEQHLYSKEELFDKMCMALGGRAAENLVF-NRITTGAQNDLE 686
Query: 530 KITKIAREMV 539
K+TKIA +
Sbjct: 687 KVTKIAYSQI 696
>TAIR|locus:2154568 [details] [associations]
symbol:ftsh9 "FTSH protease 9" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 EMBL:AB016885
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798
ProtClustDB:CLSN2689036 EMBL:AY059856 IPI:IPI00541670
RefSeq:NP_568892.1 UniGene:At.7754 ProteinModelPortal:Q9FIM2
SMR:Q9FIM2 STRING:Q9FIM2 MEROPS:M41.A03 PaxDb:Q9FIM2 PRIDE:Q9FIM2
EnsemblPlants:AT5G58870.1 GeneID:836004 KEGG:ath:AT5G58870
GeneFarm:2516 TAIR:At5g58870 InParanoid:Q9FIM2 OMA:SSKRGEN
PhylomeDB:Q9FIM2 Genevestigator:Q9FIM2 Uniprot:Q9FIM2
Length = 806
Score = 458 (166.3 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 128/393 (32%), Positives = 203/393 (51%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L+E++ ++ NP +Y G + RGVLL G PGTGKTL A+ +A ES +PF+ S +EF +
Sbjct: 341 LEEIVEFLKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVE 400
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIA-GRHAR----KDPRRRATFEALIAQL 296
GA+R+ ++F+ A++ AP+ +F+DEIDA+A R + + R T L+ ++
Sbjct: 401 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEM 460
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG F AVI + ATNR D LD RPGR DR + + PD R I V
Sbjct: 461 DG---------FDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKV 511
Query: 357 HSAGKQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
H + K+L +DVN + T GF+GAD+ NLVNE+ +++ RK + + D + +++
Sbjct: 512 HVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDFIHAVER 571
Query: 415 QLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL----AHLFPRFDWHAFSQLL 470
+ G+ E++ + + S +K ++A HEAGH V+ A L +L
Sbjct: 572 SIA---GI---EKKTARLKGS----EKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSIL 621
Query: 471 PGGKETAISVFYPREDTIDQGYTTF-GYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLE 529
P + P T + Y F L ++V GGR AE +V+ ++ G DD+
Sbjct: 622 PRSGGALGFTYIP--PTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSGRISTGALDDIR 679
Query: 530 KITKIAREMVIS-PQNARLGLAGL-TRRVGLLD 560
+ T +A + V N ++G + T G +D
Sbjct: 680 RATDMAYKAVAEYGLNEKIGPVSVATLSAGGID 712
Score = 42 (19.8 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 38 LPYTYFLEKLDSSEVAAV 55
+PY+ FL K+++ EV V
Sbjct: 176 VPYSDFLSKVNNDEVQKV 193
>TIGR_CMR|CJE_1259 [details] [associations]
symbol:CJE_1259 "cell division protein FtsH"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
OMA:RARASMP RefSeq:YP_179247.1 ProteinModelPortal:Q5HTY8 SMR:Q5HTY8
STRING:Q5HTY8 GeneID:3231766 KEGG:cjr:CJE1259 PATRIC:20044314
ProtClustDB:CLSK872348 BioCyc:CJEJ195099:GJC0-1285-MONOMER
Uniprot:Q5HTY8
Length = 645
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 112/363 (30%), Positives = 196/363 (53%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E++ ++ P +Y + G + +G+LL GPPGTGKTL A+ +A E+ +PF SG+ F +
Sbjct: 192 EIVDFLKYPERYIKLGAKIPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMF 251
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDG 298
GA+R+ ++F A++ APA VF+DEIDAI A + R T L+A++DG
Sbjct: 252 VGVGASRVRDLFENAKKEAPAIVFIDEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDG 311
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
G + VI + ATNRP+ LD +RPGR DR++ + PD K R I VH
Sbjct: 312 ----FGTES----SPVIVLAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHM 363
Query: 359 AGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLE 418
+++ V E++ T G +GAD+ N++NE+ +++ R ++Q D+V+ +++ +
Sbjct: 364 KDVKISPKVKVEDIARLTAGLAGADLANIINEAALLAGRDSKKYVEQNDLVEAVERAIA- 422
Query: 419 GMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET-A 477
G+ +K + ++ ++K+++ HE GH ++A + ++P G
Sbjct: 423 GL---------EKKSRRINEKEKKIVTYHECGHALIAETTKGAKRVSKVSVIPRGLAALG 473
Query: 478 ISVFYPREDT-IDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAR 536
++ P E+ + Q + L ++ V GGR AE + G+ ++ G +DLE+ T I +
Sbjct: 474 YTLNTPEENKFLMQKHE----LIAEVDVLLGGRAAEEVFIGE-ISTGASNDLERATDIIK 528
Query: 537 EMV 539
M+
Sbjct: 529 AMI 531
>MGI|MGI:2385906 [details] [associations]
symbol:Spg7 "spastic paraplegia 7 homolog (human)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=TAS] [GO:0008089
"anterograde axon cargo transport" evidence=IMP] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030155 "regulation of cell adhesion"
evidence=TAS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 MGI:MGI:2385906 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0030155 GO:GO:0031966 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0007155 GO:GO:0004222
GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOVERGEN:HBG050184 GO:GO:0017111
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 MEROPS:M41.006
CTD:6687 KO:K09552 ChiTaRS:SPG7 EMBL:AF512565 EMBL:AF547215
EMBL:AK145540 EMBL:BC024466 EMBL:BC024986 EMBL:BC051051
EMBL:BC096690 IPI:IPI00170128 RefSeq:NP_694816.3 UniGene:Mm.292075
ProteinModelPortal:Q3ULF4 SMR:Q3ULF4 STRING:Q3ULF4
PhosphoSite:Q3ULF4 PaxDb:Q3ULF4 PRIDE:Q3ULF4
Ensembl:ENSMUST00000108868 GeneID:234847 KEGG:mmu:234847
UCSC:uc009nud.1 InParanoid:Q3ULF4 NextBio:382391 Bgee:Q3ULF4
CleanEx:MM_SPG7 Genevestigator:Q3ULF4 Uniprot:Q3ULF4
Length = 781
Score = 464 (168.4 bits), Expect = 2.3e-43, P = 2.3e-43
Identities = 128/391 (32%), Positives = 201/391 (51%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + Y+ +P ++ + G + +G LL GPPG GKTL A+ +A E+ +PF+ +G EF +
Sbjct: 323 EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVI 382
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDG 298
GAAR+ +F AR AP V++DEIDA+ + + + T L+ ++DG
Sbjct: 383 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDG 442
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
VI + +TNR D LD +RPGR+DR ++I LP ++R +IF+ H
Sbjct: 443 ---------MGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHL 493
Query: 359 AGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
G +L + +F + L T GFSGADI N+ NE+ + + R+GH+ + + +++ +
Sbjct: 494 KGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVER-V 552
Query: 417 LEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET 476
+ G K + +S E++R++A HE+GH ++ L + + P
Sbjct: 553 IAGTA---------KKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAA 603
Query: 477 -AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIA 535
S PR DQ T L +M +A GGR AE + F VT G +DDL K+T+IA
Sbjct: 604 LGFSQMLPR----DQYLFTKEQLFERMCMALGGRAAEAISFSR-VTSGAQDDLRKVTRIA 658
Query: 536 REMV--------ISPQN---ARLGLAGLTRR 555
MV I P + A+ GL G+ RR
Sbjct: 659 YSMVKQFGMAPSIGPVSFPEAQEGLMGIGRR 689
>TAIR|locus:2066128 [details] [associations]
symbol:ftsh3 "FTSH protease 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 EMBL:AC005315 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 KO:K08956 OMA:WDEKDFR TIGRFAMs:TIGR01241
HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176 EMBL:BT002743 EMBL:AY063914
EMBL:AK226271 IPI:IPI00525466 PIR:T02738 RefSeq:NP_850129.1
UniGene:At.24335 ProteinModelPortal:Q84WU8 SMR:Q84WU8
MEROPS:M41.022 PaxDb:Q84WU8 PRIDE:Q84WU8 EnsemblPlants:AT2G29080.1
GeneID:817456 KEGG:ath:AT2G29080 GeneFarm:2506 TAIR:At2g29080
InParanoid:Q84WU8 PhylomeDB:Q84WU8 ProtClustDB:CLSN2692039
Genevestigator:Q84WU8 Uniprot:Q84WU8
Length = 809
Score = 464 (168.4 bits), Expect = 2.7e-43, P = 2.7e-43
Identities = 132/456 (28%), Positives = 229/456 (50%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
S K +K+V + + E + ++ NP +Y + G + +G LL GPPGTGKTL A+
Sbjct: 315 SKNKIYFKDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKA 374
Query: 224 LAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK- 281
A ESG+PF+ SG++F + G +R+ +F AR+ AP+ +F+DEIDAI R
Sbjct: 375 TAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIGRARGRGG 434
Query: 282 ---DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR 338
+ R +T L+ ++DG F V+ + TNRPD LD +RPGR DR
Sbjct: 435 LGGNDERESTLNQLLVEMDG---------FGTTAGVVVLAGTNRPDILDKALLRPGRFDR 485
Query: 339 RLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSV 396
++ I PD K R QIF ++ +L + ++ + L T GF+GADI N+ NE+ +++
Sbjct: 486 QITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 545
Query: 397 RKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAH 456
R + + +D+ ++ G+ +K + +S ++R +A HE+GH V+
Sbjct: 546 RHEGATVTMAHFESAIDR-VIGGL---------EKKNRVISKLERRTVAYHESGHAVVGW 595
Query: 457 LFPRFDWHAFSQLLPGGKET-AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLV 515
+ ++P G + + P E+ + F M + GGR AE+++
Sbjct: 596 FLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTL----GGRAAEQVL 651
Query: 516 FGDDVTDGGKDDLEKITKIA-REMVISPQNARLGLAGLTRRVGLLD--RPDSSD-GDLIK 571
G ++ G ++DLEK+TK+ ++ + + ++GL R D +P S+ G +I
Sbjct: 652 IGK-ISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPRDDGYDFSKPYSNKTGAIID 710
Query: 572 YRWDDPQVIPTDMTLELSE---LFTRELTRVIIKKK 604
D + T+EL E + E+ ++++K+
Sbjct: 711 EEVRDWVAKAYERTVELVEEHKVKVAEIAELLLEKE 746
>UNIPROTKB|A7E2Z6 [details] [associations]
symbol:SPG7 "SPG7 protein" species:9913 "Bos taurus"
[GO:0008089 "anterograde axon cargo transport" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
MEROPS:M41.006 CTD:6687 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
EMBL:DAAA02046269 EMBL:BC151632 IPI:IPI00866907
RefSeq:NP_001095492.1 UniGene:Bt.11239 SMR:A7E2Z6 STRING:A7E2Z6
Ensembl:ENSBTAT00000032500 GeneID:515269 KEGG:bta:515269
InParanoid:A7E2Z6 NextBio:20871741 Uniprot:A7E2Z6
Length = 779
Score = 460 (167.0 bits), Expect = 6.2e-43, P = 6.2e-43
Identities = 135/442 (30%), Positives = 221/442 (50%)
Query: 107 YFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDT 166
+F L AL + L+++ L +T + +NQL MA F + G +
Sbjct: 250 FFGNALYALGMTAVGLAILWYVFRLAGMTGREGGFSAFNQL-KMA---RFTIVDGKMGKG 305
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
S +K+V + + E + Y+ +P ++ + G + +G LL GPPG GKTL A+ +A
Sbjct: 306 VS-FKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 364
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----- 280
E+ +PF+ +G EF + GAAR+ +F AR AP V++DEIDA+ + +
Sbjct: 365 EAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTAVSGF 424
Query: 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
+ T L+ ++DG VI + ATNR D LD +RPGR+DR +
Sbjct: 425 SNTEEEQTLNQLLVEMDG---------MGTTDHVIVLAATNRADILDNALLRPGRLDRHV 475
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRK 398
+I LP ++R +IF+ H +L +F + L T GFSGADI N+ NE+ + + R+
Sbjct: 476 FIDLPTLQERKEIFEQHLKSLKLTRASSFYSQRLAELTPGFSGADIANICNEAALHAARE 535
Query: 399 GHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLF 458
GH+ + ++ D ++++ G K + +S E+++++A HE+GH ++ L
Sbjct: 536 GHTAVHTSNL-DYAVERVVAGTA---------KKSKVLSKEEQKVVAFHESGHALVGWLL 585
Query: 459 PRFDWHAFSQLLPGGKET-AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG 517
+ + P + PR DQ T L +M +A GGR +E + F
Sbjct: 586 EHTEAVMKVSITPRTNAALGFAQMLPR----DQHLFTREQLFERMCMALGGRASESISF- 640
Query: 518 DDVTDGGKDDLEKITKIAREMV 539
+ VT G +DDL K+T+IA MV
Sbjct: 641 NRVTSGAQDDLRKVTRIAYSMV 662
>DICTYBASE|DDB_G0293388 [details] [associations]
symbol:DDB_G0293388 "ATP-dependent metalloprotease"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0293388 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:AAFI02000204
RefSeq:XP_629167.2 ProteinModelPortal:Q54BW7 STRING:Q54BW7
MEROPS:M41.A16 EnsemblProtists:DDB0304811 GeneID:8629188
KEGG:ddi:DDB_G0293388 InParanoid:Q54BW7 OMA:ICLAGRA Uniprot:Q54BW7
Length = 767
Score = 458 (166.3 bits), Expect = 9.5e-43, P = 9.5e-43
Identities = 118/378 (31%), Positives = 195/378 (51%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
+ T + + +V +V + L+E++ Y+ +P +Y G + +GVLLSG PGTGKTL AR
Sbjct: 293 NQTPTSFDDVKGIQEVKEELEEIVDYLLHPTKYNSIGAKLPKGVLLSGEPGTGKTLLARA 352
Query: 224 LAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD 282
+A E+G+ F++ +G+ F + G+ R+ E+F+ AR P +F+DEIDA+ G+ +R
Sbjct: 353 IAGEAGVSFLYTTGSSFDEKYVGVGSRRVRELFNAAREKQPCIIFIDEIDAV-GK-SRNT 410
Query: 283 PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYI 342
T L+ ++DG F ++ I ATN P+ LD +RPGR DR + +
Sbjct: 411 AHHNETLLQLLTEMDG---------FEGNSQIMIIGATNAPNSLDPALLRPGRFDRHISV 461
Query: 343 GLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 402
+PD K R +I D + + +V + + T GF+GAD+ NL+N + I +V+ G
Sbjct: 462 PIPDMKGRSEIIDHYLKKVKHTVEVKADTIARATPGFTGADLSNLINTAAIKAVQNGKET 521
Query: 403 IQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFD 462
I + I D D L MG + + +S E +R A HEAGH ++A + D
Sbjct: 522 ISIKQIDDARDDIL---MG-------RARLNAVMSEEARRNTAYHEAGHALVAAMTEAAD 571
Query: 463 WHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVT 521
+ ++ G+ + P D + YT + ++ + GR AE + FG D VT
Sbjct: 572 PIHKATIVQRGQALGMVSQLPEMDHVQ--YTR-KQMMARLAICLAGRAAEEIFFGVDGVT 628
Query: 522 DGGKDDLEKITKIAREMV 539
G D ++ + +A M+
Sbjct: 629 SGASSDFQQASSLAFSMI 646
>UNIPROTKB|Q9UQ90 [details] [associations]
symbol:SPG7 "Paraplegin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0008089 "anterograde axon cargo transport"
evidence=IEA] [GO:0031966 "mitochondrial membrane" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004222
"metalloendopeptidase activity" evidence=IDA] [GO:0005739
"mitochondrion" evidence=TAS] [GO:0051082 "unfolded protein
binding" evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] [GO:0008233 "peptidase activity" evidence=TAS]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0007399 GO:GO:0031966 GO:GO:0046872
GO:GO:0008219 GO:GO:0051082 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 EMBL:Y16610 EMBL:AF080525
EMBL:AF080511 EMBL:AF080512 EMBL:AF080513 EMBL:AF080514
EMBL:AF080515 EMBL:AF080516 EMBL:AF080517 EMBL:AF080518
EMBL:AF080519 EMBL:AF080520 EMBL:AF080521 EMBL:AF080522
EMBL:AF080523 EMBL:AF080524 EMBL:BC007692 EMBL:BC035929
EMBL:BC036104 EMBL:BC110530 EMBL:BC110531 IPI:IPI00299010
IPI:IPI00398508 RefSeq:NP_003110.1 RefSeq:NP_955399.1
UniGene:Hs.185597 PDB:2QZ4 PDBsum:2QZ4 ProteinModelPortal:Q9UQ90
SMR:Q9UQ90 IntAct:Q9UQ90 STRING:Q9UQ90 MEROPS:M41.006
PhosphoSite:Q9UQ90 DMDM:116242796 PaxDb:Q9UQ90 PRIDE:Q9UQ90
DNASU:6687 Ensembl:ENST00000268704 Ensembl:ENST00000341316
GeneID:6687 KEGG:hsa:6687 UCSC:uc002fni.3 UCSC:uc002fnj.3 CTD:6687
GeneCards:GC16P089574 HGNC:HGNC:11237 MIM:602783 MIM:607259
neXtProt:NX_Q9UQ90 Orphanet:99013 PharmGKB:PA36067
InParanoid:Q9UQ90 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
PhylomeDB:Q9UQ90 ChiTaRS:SPG7 EvolutionaryTrace:Q9UQ90
GenomeRNAi:6687 NextBio:26057 ArrayExpress:Q9UQ90 Bgee:Q9UQ90
CleanEx:HS_SPG7 Genevestigator:Q9UQ90 GermOnline:ENSG00000197912
Uniprot:Q9UQ90
Length = 795
Score = 456 (165.6 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 125/391 (31%), Positives = 200/391 (51%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + Y+ +P ++ + G + +G LL GPPG GKTL A+ +A E+ +PF+ +G EF +
Sbjct: 323 EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVI 382
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDG 298
GAAR+ +F AR AP V++DEIDA+ + + + T L+ ++DG
Sbjct: 383 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 442
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
VI + +TNR D LD +RPGR+DR ++I LP ++R +IF+ H
Sbjct: 443 ---------MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 493
Query: 359 AGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
+L + F + L T GFSGADI N+ NE+ + + R+GH+ + + +++ +
Sbjct: 494 KSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER-V 552
Query: 417 LEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET 476
L G K + +S E+++++A HE+GH ++ + + + P
Sbjct: 553 LAGTA---------KKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAA 603
Query: 477 -AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIA 535
+ PR DQ T L +M +A GGR +E L F ++VT G +DDL K+T+IA
Sbjct: 604 LGFAQMLPR----DQHLFTKEQLFERMCMALGGRASEALSF-NEVTSGAQDDLRKVTRIA 658
Query: 536 REMV--------ISP---QNARLGLAGLTRR 555
MV I P A+ GL G+ RR
Sbjct: 659 YSMVKQFGMAPGIGPISFPEAQEGLMGIGRR 689
>TIGR_CMR|CJE_1085 [details] [associations]
symbol:CJE_1085 "cell division protein FtsH, putative"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0051301 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0465 GO:GO:0017111 HOGENOM:HOG000217276 KO:K01417
RefSeq:YP_179078.1 ProteinModelPortal:Q5HUF7 SMR:Q5HUF7
STRING:Q5HUF7 GeneID:3231594 KEGG:cjr:CJE1085 PATRIC:20043979
OMA:HRSDERE ProtClustDB:CLSK2395802
BioCyc:CJEJ195099:GJC0-1111-MONOMER Uniprot:Q5HUF7
Length = 538
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 109/330 (33%), Positives = 180/330 (54%)
Query: 119 ILILSLIRETVMLLHITSSRLLYK----KYNQLFDMAYAENFILPVGYVSDTKS--MYKE 172
+L++ +I + L + + L K NQ A N L ++ S + +
Sbjct: 94 VLLIFIIALFISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFND 153
Query: 173 VVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
V +V L EL+ ++ NP +Y E GV+ +GVL+ GPPG GKTL A+ +A E+G+PF
Sbjct: 154 VAGVDEVKMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPF 213
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIA-GRHARKDPRRRATFE 290
+ SG+ F + GA R+ E+FS A+ AP+ VF+DEIDA+ R + R +T
Sbjct: 214 FYQSGSSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLN 273
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
L+ Q+DG ++ +G VI I ATN+ + +D +R GR DRR+++ LPD K R
Sbjct: 274 QLLTQMDGFEDNSG---------VIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDR 324
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410
++I +++ K ++N ++ +VGFSGA + LVNE+ I ++R+ + +++ D
Sbjct: 325 LKILEIYMKDKN--NNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYA 382
Query: 411 VLDKQLLEGMGVLLTEEEQQKCEQSVSFEK 440
VL+K LL +L E++K + + K
Sbjct: 383 VLNKVLLGKKKILSFNNEEKKIQATYQAAK 412
>TAIR|locus:2025052 [details] [associations]
symbol:ftsh10 "FTSH protease 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
EMBL:AC022464 ProtClustDB:CLSN2692039 EMBL:AY064138 EMBL:AY124808
EMBL:AK230173 IPI:IPI00520253 PIR:H86209 RefSeq:NP_172231.2
UniGene:At.23339 ProteinModelPortal:Q8VZI8 SMR:Q8VZI8 STRING:Q8VZI8
MEROPS:M41.023 PaxDb:Q8VZI8 PRIDE:Q8VZI8 EnsemblPlants:AT1G07510.1
GeneID:837265 KEGG:ath:AT1G07510 GeneFarm:2535 GeneFarm:2675
TAIR:At1g07510 InParanoid:Q8VZI8 OMA:YSEDTAM PhylomeDB:Q8VZI8
Genevestigator:Q8VZI8 Uniprot:Q8VZI8
Length = 813
Score = 455 (165.2 bits), Expect = 2.6e-42, P = 2.6e-42
Identities = 121/412 (29%), Positives = 208/412 (50%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
S K +K+V + + E + ++ NP +Y + G + +G LL GPPGTGKTL A+
Sbjct: 320 SKNKIYFKDVAGCEEAKQEIMEFVHFLQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKA 379
Query: 224 LAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK- 281
A ES +PF+ SG++F + G +R+ +F AR+ AP+ +F+DEIDAI R
Sbjct: 380 TAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGG 439
Query: 282 ----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337
+ R +T L+ ++DG F V+ + TNRPD LD +RPGR D
Sbjct: 440 FSGGNDERESTLNQLLVEMDG---------FGTTAGVVVLAGTNRPDILDKALLRPGRFD 490
Query: 338 RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMS 395
R++ I PD K R QIF ++ +L + ++ + L T GF+GADI N+ NE+ +++
Sbjct: 491 RQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 550
Query: 396 VRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLA 455
R + + +D+ ++ G+ +K + +S ++R +A HE+GH V
Sbjct: 551 ARHEGATVTMAHFDSAIDR-VIGGL---------EKKNRVISKLERRTVAYHESGHAVAG 600
Query: 456 HLFPRFDWHAFSQLLPGGKET-AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERL 514
+ ++P G + + P E+ + F M + GGR AE++
Sbjct: 601 WFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTL----GGRAAEQV 656
Query: 515 VFGDDVTDGGKDDLEKITKIA-REMVISPQNARLGLAGLTRRVGLLDRPDSS 565
+ G ++ G ++DLEK+TK+ ++ + + ++GL +R +P S+
Sbjct: 657 LIGR-ISTGAQNDLEKVTKMTYAQVAVYGFSDKIGLLSFPQREDEFSKPYSN 707
>FB|FBgn0036702 [details] [associations]
symbol:CG6512 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046331
"lateral inhibition" evidence=IMP] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AE014296
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0030163 GO:GO:0046331
GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
OMA:YSEDTAM HSSP:Q9LCZ4 UniGene:Dm.986 GeneID:39922
KEGG:dme:Dmel_CG6512 FlyBase:FBgn0036702 GenomeRNAi:39922
NextBio:816090 EMBL:AY084199 RefSeq:NP_730248.2 SMR:Q8T4G5
IntAct:Q8T4G5 MINT:MINT-1004758 STRING:Q8T4G5
EnsemblMetazoa:FBtr0075251 UCSC:CG6512-RA InParanoid:Q8T4G5
Uniprot:Q8T4G5
Length = 826
Score = 453 (164.5 bits), Expect = 4.6e-42, P = 4.6e-42
Identities = 112/345 (32%), Positives = 177/345 (51%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + ++ NP QY + G + +G +L+GPPGTGKTL A+ A E+ +PF+ SG+EF +
Sbjct: 342 EFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 401
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT 303
G +R+ +MF++AR++AP +F+DEIDA+ + K + E + QL
Sbjct: 402 VGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGHSEQENTLNQL-----LV 456
Query: 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL 363
+D F+ V+ + ATNR D LD +RPGR DR++Y+ PD K R IF VH +
Sbjct: 457 EMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRASIFKVHLGNLKT 516
Query: 364 AEDVN--FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMG 421
+ D N ++ T GF+GADI N+ NE+ +++ R I + +++ ++ GM
Sbjct: 517 SLDKNELSRKMAALTPGFTGADIANVCNEAALIAARDSKDSIVLKHFEQAIER-VIAGM- 574
Query: 422 VLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVF 481
+K ++ E+KR +A HEAGH V D ++P GK + +
Sbjct: 575 --------EKKTNVLAPEEKRTVAHHEAGHAVAGWFLEHADPLLKVSIIPRGKGLGYAQY 626
Query: 482 YPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKD 526
P++ + F + M + GGR AE L F T D
Sbjct: 627 LPKDHYLLSKEQLFDRMCMTL----GGRVAEELFFNRITTGAQDD 667
Score = 292 (107.8 bits), Expect = 2.3e-22, P = 2.3e-22
Identities = 79/247 (31%), Positives = 124/247 (50%)
Query: 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA 364
+D F+ V+ + ATNR D LD +RPGR DR++Y+ PD K R IF VH + +
Sbjct: 458 MDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRASIFKVHLGNLKTS 517
Query: 365 EDVN--FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGV 422
D N ++ T GF+GADI N+ NE+ +++ R I + +++ ++ GM
Sbjct: 518 LDKNELSRKMAALTPGFTGADIANVCNEAALIAARDSKDSIVLKHFEQAIER-VIAGM-- 574
Query: 423 LLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFY 482
+K ++ E+KR +A HEAGH V D ++P GK + +
Sbjct: 575 -------EKKTNVLAPEEKRTVAHHEAGHAVAGWFLEHADPLLKVSIIPRGKGLGYAQYL 627
Query: 483 PREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVIS- 541
P++ + F + M + GGR AE L F + +T G +DDL+KIT IA V+
Sbjct: 628 PKDHYLLSKEQLFDRMCMTL----GGRVAEELFF-NRITTGAQDDLKKITDIAYSQVVRF 682
Query: 542 PQNARLG 548
N ++G
Sbjct: 683 GMNEKVG 689
>UNIPROTKB|E2R4F3 [details] [associations]
symbol:SPG7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008089 "anterograde axon cargo transport"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 CTD:6687 KO:K09552 OMA:MMDHEAK
EMBL:AAEX03003953 EMBL:AAEX03003954 RefSeq:XP_546777.3
Ensembl:ENSCAFT00000031561 GeneID:489657 KEGG:cfa:489657
NextBio:20862809 Uniprot:E2R4F3
Length = 793
Score = 447 (162.4 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 116/364 (31%), Positives = 190/364 (52%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + Y+ +P ++ + G + +G LL GPPG GKTL A+ +A E+ +PF+ +G EF +
Sbjct: 323 EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVI 382
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDG 298
GAAR+ +F AR AP V++DEIDA+ + + + T L+ ++DG
Sbjct: 383 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 442
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
VI + +TNR D LD +RPGR+DR ++I LP ++R +IF+ H
Sbjct: 443 ---------MGTTDHVIVLASTNRADILDNALLRPGRLDRHVFIDLPTLQERREIFEHHL 493
Query: 359 AGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
+L + +F + L T GFSGADI N+ NE+ + + R+GH+ + + +++ +
Sbjct: 494 KSLKLTQASSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVER-V 552
Query: 417 LEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET 476
+ G K + +S E+++++A HE+GH ++ L + + P
Sbjct: 553 IAGTA---------KKSKILSKEEQKVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAA 603
Query: 477 -AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIA 535
+ PR DQ T L +M +A GGR +E + F + VT G +DDL K+T+IA
Sbjct: 604 LGFAQMLPR----DQHLFTKEQLFERMCMALGGRVSETISF-NKVTSGAQDDLRKVTRIA 658
Query: 536 REMV 539
MV
Sbjct: 659 YSMV 662
>ZFIN|ZDB-GENE-030131-5391 [details] [associations]
symbol:spg7 "spastic paraplegia 7" species:7955
"Danio rerio" [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 SMART:SM00382
ZFIN:ZDB-GENE-030131-5391 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:6687 KO:K09552 OMA:MMDHEAK EMBL:AL954648 EMBL:BX470191
IPI:IPI00483001 RefSeq:XP_001923118.1 UniGene:Dr.105782
Ensembl:ENSDART00000098438 GeneID:794740 KEGG:dre:794740
NextBio:20931970 Uniprot:E7F2S4
Length = 788
Score = 446 (162.1 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 118/364 (32%), Positives = 187/364 (51%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + Y+ NP +Y + G + +G LL GPPG GKTL A+ +A E+ +PF+ +G+EF +
Sbjct: 314 EFVDYLKNPDRYLQLGAKVPKGSLLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVI 373
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDG 298
GAAR+ +F AR AP V++DEIDA+ + + + T L+ ++DG
Sbjct: 374 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTNMSGFSNTEEEQTLNQLLVEMDG 433
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
VI + +TNR D LD +RPGR+DR ++I LP ++R +IF+ H
Sbjct: 434 ---------MGTTDHVIVLASTNRADILDNALMRPGRLDRHIFIDLPTLQERKEIFEQHL 484
Query: 359 AGKQLAEDVNFEELVFR--TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
+L + +F L T GFSGADI N+ NE+ + + R+G I +++ +
Sbjct: 485 KILKLTQPADFYSLRLAELTPGFSGADIANICNEAALHAAREGFKSIDTFSFEYAVER-V 543
Query: 417 LEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET 476
+ G K + +S E++R++A HE+GH ++ L + + P
Sbjct: 544 IAG---------SVKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAA 594
Query: 477 -AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIA 535
+ PR DQ T L +M +A GGR +E + F + VT G +DDL K+T++A
Sbjct: 595 LGFAQILPR----DQFLFTKEQLFERMCMALGGRASEAITF-NKVTTGAQDDLRKVTRVA 649
Query: 536 REMV 539
MV
Sbjct: 650 YSMV 653
>WB|WBGene00021425 [details] [associations]
symbol:ppgn-1 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
KO:K09552 EMBL:FO080872 EMBL:AB257343 RefSeq:NP_500191.3
UniGene:Cel.12073 ProteinModelPortal:G5EDB6 SMR:G5EDB6
MEROPS:M41.A12 EnsemblMetazoa:Y38F2AR.7.1
EnsemblMetazoa:Y38F2AR.7.2 GeneID:177021 KEGG:cel:CELE_Y38F2AR.7
CTD:177021 WormBase:Y38F2AR.7 OMA:DKISWSE NextBio:895012
Uniprot:G5EDB6
Length = 747
Score = 441 (160.3 bits), Expect = 8.6e-40, P = 8.6e-40
Identities = 124/382 (32%), Positives = 195/382 (51%)
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
K +K+V + + E + Y+ NP ++ + G + RG LL+GPPG GKTL A+ LA
Sbjct: 281 KIKFKDVAGCSEAKVEIREFVDYLKNPGRFTKLGAKLPRGALLTGPPGCGKTLLAKALAA 340
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR 285
ES +PF+ +G+EF + GA+RI +F AR AP +++DEIDAI GR +
Sbjct: 341 ESTVPFISMNGSEFVEVIGGLGASRIRGLFKEARSRAPCIIYIDEIDAI-GRKRSEGAGA 399
Query: 286 RATFEALIAQLDGDKERT------GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRR 339
F G++E+T +D V+ + +TNR D LD +RPGR DR
Sbjct: 400 GGGFGGG----SGEEEQTLNQLLVEMDGMGSGNGVVVLASTNRADVLDKALLRPGRFDRH 455
Query: 340 LYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397
+ I LP +R +F+++ +L A + L T GF+GADI N+ NES I +
Sbjct: 456 ISIDLPTVLERKDMFELYMRKIKLDHAPQEYSQRLAALTPGFTGADIMNVCNESAIRAAS 515
Query: 398 KGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHL 457
+ +D+ LD+ +L G +K +S+ E++ ++A HEAGH ++ +
Sbjct: 516 NKCHVVTHKDMEYALDR-VLAG---------SEKRSRSLVEEEREVVAYHEAGHALVGWM 565
Query: 458 FPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG 517
D ++P T+ ++ + + D+ + L +M + GGRCAE L FG
Sbjct: 566 LEHTDALLKVTIIP---RTSAALGFAQYSPRDKHLFSKDELFDRMCMMLGGRCAENLKFG 622
Query: 518 DDVTDGGKDDLEKITKIAREMV 539
T G +DDL+K+TK A V
Sbjct: 623 R-ATSGAQDDLQKVTKSAYAQV 643
>CGD|CAL0000075 [details] [associations]
symbol:AFG3 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005745 "m-AAA complex"
evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
Uniprot:Q5AJC2
Length = 795
Score = 440 (159.9 bits), Expect = 1.6e-39, P = 1.6e-39
Identities = 136/440 (30%), Positives = 224/440 (50%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
++ K +K+V + + + E + ++ +P +Y + G + RG +LSGPPGTGKTL A+
Sbjct: 280 NEVKIKFKDVAGCDESKEEIMEFVKFLQDPHKYEKLGAKIPRGAILSGPPGTGKTLLAKA 339
Query: 224 LAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIA-----GR 277
A E+G+PF+ SG+EF + GA+R+ ++F AR APA +FVDEIDAI GR
Sbjct: 340 TAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFKTAREMAPAIIFVDEIDAIGKERGNGR 399
Query: 278 HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337
D R T L+ ++DG F V+ + TNRPD LD +RPGR D
Sbjct: 400 MGGNDEREN-TLNQLLVEMDG---------FDTTDHVVVLAGTNRPDILDKALLRPGRFD 449
Query: 338 RRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSG-ADIRNLVNE--SG 392
R + I +PD + R QIF VH +L +D++ ++ + V FS ++N E +G
Sbjct: 450 RHISIDVPDVEGRKQIFKVHLNKLKLKSVQDIDAKQ---KDVDFSKYQQLKNEEIEKLAG 506
Query: 393 -IMSVRKGHSKIQQQDIVDVLDKQLL----EGMGVLLTEEEQQKCEQSVS-FEKK-RLL- 444
+ ++ G + DI + ++ L E + T +Q E+ ++ EKK R+L
Sbjct: 507 RLAALTPGFAGA---DIANCCNEGALIAAREDAPAVDTYHFEQAIERVIAGLEKKSRILS 563
Query: 445 -------AVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET-AISVFYPREDTIDQGYTTFG 496
A HEAGH + D ++P G+ + + P+ DQ T+
Sbjct: 564 PEEKKTVAYHEAGHAICGWFLQYADPLVKVSIIPRGQGALGYAQYLPK----DQYLTSQE 619
Query: 497 YLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRV 556
K +M++ GGR +E L F D VT G DD +KIT++A++M++ +LG++ ++
Sbjct: 620 QFKHRMIMTLGGRVSEELHF-DTVTSGASDDFKKITQMAQQMIL-----KLGMSDKLGQI 673
Query: 557 GLLDRPDSSDGDLIKYRWDD 576
D+ +G + + + +
Sbjct: 674 CYDTSSDNGNGFKVHHNYSE 693
>UNIPROTKB|Q5AJC2 [details] [associations]
symbol:AFG3 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
Uniprot:Q5AJC2
Length = 795
Score = 440 (159.9 bits), Expect = 1.6e-39, P = 1.6e-39
Identities = 136/440 (30%), Positives = 224/440 (50%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
++ K +K+V + + + E + ++ +P +Y + G + RG +LSGPPGTGKTL A+
Sbjct: 280 NEVKIKFKDVAGCDESKEEIMEFVKFLQDPHKYEKLGAKIPRGAILSGPPGTGKTLLAKA 339
Query: 224 LAKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIA-----GR 277
A E+G+PF+ SG+EF + GA+R+ ++F AR APA +FVDEIDAI GR
Sbjct: 340 TAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFKTAREMAPAIIFVDEIDAIGKERGNGR 399
Query: 278 HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337
D R T L+ ++DG F V+ + TNRPD LD +RPGR D
Sbjct: 400 MGGNDEREN-TLNQLLVEMDG---------FDTTDHVVVLAGTNRPDILDKALLRPGRFD 449
Query: 338 RRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSG-ADIRNLVNE--SG 392
R + I +PD + R QIF VH +L +D++ ++ + V FS ++N E +G
Sbjct: 450 RHISIDVPDVEGRKQIFKVHLNKLKLKSVQDIDAKQ---KDVDFSKYQQLKNEEIEKLAG 506
Query: 393 -IMSVRKGHSKIQQQDIVDVLDKQLL----EGMGVLLTEEEQQKCEQSVS-FEKK-RLL- 444
+ ++ G + DI + ++ L E + T +Q E+ ++ EKK R+L
Sbjct: 507 RLAALTPGFAGA---DIANCCNEGALIAAREDAPAVDTYHFEQAIERVIAGLEKKSRILS 563
Query: 445 -------AVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET-AISVFYPREDTIDQGYTTFG 496
A HEAGH + D ++P G+ + + P+ DQ T+
Sbjct: 564 PEEKKTVAYHEAGHAICGWFLQYADPLVKVSIIPRGQGALGYAQYLPK----DQYLTSQE 619
Query: 497 YLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRV 556
K +M++ GGR +E L F D VT G DD +KIT++A++M++ +LG++ ++
Sbjct: 620 QFKHRMIMTLGGRVSEELHF-DTVTSGASDDFKKITQMAQQMIL-----KLGMSDKLGQI 673
Query: 557 GLLDRPDSSDGDLIKYRWDD 576
D+ +G + + + +
Sbjct: 674 CYDTSSDNGNGFKVHHNYSE 693
>TAIR|locus:2076929 [details] [associations]
symbol:AT3G02450 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0009941 "chloroplast envelope" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR011546 Pfam:PF00004 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AC021640
EMBL:CP002686 GO:GO:0051301 GO:GO:0008270 GO:GO:0009941
GO:GO:0004222 GO:GO:0017111 HSSP:Q9LCZ4 EMBL:AY062811 EMBL:BT008384
IPI:IPI00524458 RefSeq:NP_186894.1 UniGene:At.27477
ProteinModelPortal:Q9M895 SMR:Q9M895 STRING:Q9M895 PRIDE:Q9M895
EnsemblPlants:AT3G02450.1 GeneID:821139 KEGG:ath:AT3G02450
InParanoid:Q9M895 OMA:SRRIYYN ProtClustDB:CLSN2685201
Genevestigator:Q9M895 Uniprot:Q9M895
Length = 622
Score = 415 (151.1 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 91/238 (38%), Positives = 141/238 (59%)
Query: 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240
D L E++ + + Y + G + RGVLL GPPGTGKTL AR +A E+G+PF S +EF
Sbjct: 344 DELVEIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEF 403
Query: 241 TDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDG 298
+ GAARI ++F+ AR+N+P+ +F+DE+DA+ G+ R + R T L+ ++DG
Sbjct: 404 VELFVGRGAARIRDLFNAARKNSPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDG 463
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
+ T VI I ATNRP+ LD RPGR R++ + PD + R +I +H
Sbjct: 464 FESDT---------KVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRRKILAIHL 514
Query: 359 AGKQLAEDVNFE-ELVFR-TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
L ED +LV T GF GAD+ N+VNE+ +++ R+G + ++DI++ +++
Sbjct: 515 RDVPLEEDAFLICDLVASLTPGFVGADLANIVNEAALLAARRGGEAVAREDIMEAIER 572
Score = 58 (25.5 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 38 LPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAEV 97
+PY+ F+ L V+ V+ E +R+Y E +E VVD D + ET+ ++
Sbjct: 175 VPYSDFVTNLRGGSVSKVLLEEGSRRIYYNTDEN--VE-VVD---DVHKSETLEDPAIQI 228
Query: 98 D 98
D
Sbjct: 229 D 229
>DICTYBASE|DDB_G0272120 [details] [associations]
symbol:rcaA "peptidase M41, FtsH domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0272120 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GenomeReviews:CM000151_GR GO:GO:0004222
EMBL:AAFI02000008 GO:GO:0030163 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 ProtClustDB:CLSZ2846729 RefSeq:XP_645267.1
ProteinModelPortal:Q75JS8 SMR:Q75JS8 STRING:Q75JS8
EnsemblProtists:DDB0185211 GeneID:8618433 KEGG:ddi:DDB_G0272120
InParanoid:Q75JS8 OMA:ERTIVAH Uniprot:Q75JS8
Length = 844
Score = 438 (159.2 bits), Expect = 3.8e-39, P = 3.8e-39
Identities = 133/417 (31%), Positives = 209/417 (50%)
Query: 109 LKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS 168
L+ L+A+ P +L++ L+ I SS L K + LF ++ V S T
Sbjct: 303 LRELVAISPTLLMIGLL--IYFSRGINSS--LTKGASSLF-----KSKSKAVKATSTTT- 352
Query: 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
+K+V + + + E + ++ +P +Y + G + +G +LSGPPGTGKTL A+ A E+
Sbjct: 353 -FKDVAGMDEAKEEIMEFVSFLKDPSRYKKLGARIPKGAILSGPPGTGKTLLAKATAGEA 411
Query: 229 GLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPR 284
G+ F SG++F + G +R+ ++F AR N P VF+DEIDA+ +R +
Sbjct: 412 GVNFYTISGSDFIEMFVGVGPSRVRDLFKEARANTPCIVFIDEIDAVGRARSRGGFHNDE 471
Query: 285 RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344
R T L+ ++DG FS V+ TNR D LD +RPGR DR++Y+G
Sbjct: 472 RENTLNQLLVEMDG---------FSSTSGVVVFAGTNRSDVLDPALLRPGRFDRQIYVGK 522
Query: 345 PDAKQRVQIFDVHSAGKQLAEDVNFEELVFR----TVGFSGADIRNLVNESGIMSVRKGH 400
PD K R IF VH K + D EE+ + T GFSGADI N+ NE +++ RK
Sbjct: 523 PDIKGRKDIFMVHL--KNIKLDGEMEEIAKKLATLTPGFSGADIANVCNEGALVAARKDA 580
Query: 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPR 460
+ + +++ L+ G L E + +S E++ ++A HEAGH V+
Sbjct: 581 TSANFDHFEEAIERVLV---G--LKRENRV-----LSPEERTIVAHHEAGHAVVGWFLEH 630
Query: 461 FDWHAFSQLLPGGKET-AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVF 516
D ++P G T + + P+ DQ T L ++ V+ GGR AE ++F
Sbjct: 631 TDPLLKVSIVPRGSGTLGFAQYQPK----DQYLYTREQLFDRICVSLGGRIAESIIF 683
Score = 306 (112.8 bits), Expect = 7.0e-24, P = 7.0e-24
Identities = 94/311 (30%), Positives = 158/311 (50%)
Query: 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA 364
+D FS V+ TNR D LD +RPGR DR++Y+G PD K R IF VH K +
Sbjct: 483 MDGFSSTSGVVVFAGTNRSDVLDPALLRPGRFDRQIYVGKPDIKGRKDIFMVHL--KNIK 540
Query: 365 EDVNFEELVFR----TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGM 420
D EE+ + T GFSGADI N+ NE +++ RK + + +++ L+
Sbjct: 541 LDGEMEEIAKKLATLTPGFSGADIANVCNEGALVAARKDATSANFDHFEEAIERVLV--- 597
Query: 421 GVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET-AIS 479
G L E + +S E++ ++A HEAGH V+ D ++P G T +
Sbjct: 598 G--LKRENRV-----LSPEERTIVAHHEAGHAVVGWFLEHTDPLLKVSIVPRGSGTLGFA 650
Query: 480 VFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV 539
+ P+ DQ T L ++ V+ GGR AE ++F D ++ G DDL+K+TK+A V
Sbjct: 651 QYQPK----DQYLYTREQLFDRICVSLGGRIAESIIF-DRISTGAMDDLDKVTKMASASV 705
Query: 540 ISPQNARLGLAGLTRRVGLLD-RPDSSDGDLIK-YRWDDPQVIPTDMTLELSELFTRELT 597
++ G++ +VG+ R + D ++K Y ++I ++ +++ +++ T
Sbjct: 706 VN--------YGMSEKVGVASFRKEGDDITVVKPYSQATARMIDEEIRRMVNDAYSKT-T 756
Query: 598 RVIIKKKNCFI 608
+++ +KK I
Sbjct: 757 QLLHEKKELLI 767
>CGD|CAL0005827 [details] [associations]
symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
Length = 428
Score = 383 (139.9 bits), Expect = 5.3e-35, P = 5.3e-35
Identities = 96/257 (37%), Positives = 145/257 (56%)
Query: 175 LGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG + +L + + + + NP + G++ +GVLL GPPGTGKTL A+ +A G
Sbjct: 174 IGGLTEQIRELREVIELPLKNPELFTRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 233
Query: 232 FVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRR 286
F+F+ + D +AR I EMF+ A+ + P +F+DE+DAI GR + D +
Sbjct: 234 FIFSPASAIVDKYIGESARLIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQ 293
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
T L+ Q+DG D +L Q I I ATNRPD LD +R GR+DR++ IGLP+
Sbjct: 294 RTLMELLNQMDG------FD--TLGQTKI-IMATNRPDTLDPALLRAGRLDRKIEIGLPN 344
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406
R++IF +H++ + +FE V + GF+GADIRN+V E+G ++R I Q
Sbjct: 345 EAGRLEIFKIHTSKVAKQGEFDFEAAVKMSDGFNGADIRNVVTEAGFFAIRDDRDYILQN 404
Query: 407 DIVD----VLDKQLLEG 419
D++ V D + LEG
Sbjct: 405 DLMKAVRKVADVKKLEG 421
>GENEDB_PFALCIPARUM|PF10_0081 [details] [associations]
symbol:PF10_0081 "26S proteasome regulatory
subunit 4, putative" species:5833 "Plasmodium falciparum"
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006508
"proteolysis" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
Length = 448
Score = 378 (138.1 bits), Expect = 1.9e-34, P = 1.9e-34
Identities = 103/309 (33%), Positives = 161/309 (52%)
Query: 121 ILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE-NFILPVGYVSDTK-SMYKEVV-LGG 177
ILS + + LL S LL K N + + E + ++ V V Y ++ L
Sbjct: 143 ILSFVDKD--LLEPGCSVLLNNKTNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLES 200
Query: 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG 237
+ ++ + + + + +P Y + G++ +GV+L GPPGTGKTL A+ +A E+ F+ G
Sbjct: 201 QIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 260
Query: 238 AEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATFEAL 292
+E G + EMF +A +AP+ VF+DEIDA+ + A R + T L
Sbjct: 261 SELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLEL 320
Query: 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352
+ QLDG F R V I ATNR D LD +RPGRIDR++ + PD K + +
Sbjct: 321 LNQLDG---------FDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRR 371
Query: 353 IFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412
IF +H++ ++ DV+ EE V SGADI+ + E+G++++R+ KI Q D+
Sbjct: 372 IFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMKITQADLRKAR 431
Query: 413 DKQLLEGMG 421
DK L + G
Sbjct: 432 DKALFQKKG 440
>UNIPROTKB|Q8IJW0 [details] [associations]
symbol:PF10_0081 "26S proteasome regulatory subunit 4,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
Length = 448
Score = 378 (138.1 bits), Expect = 1.9e-34, P = 1.9e-34
Identities = 103/309 (33%), Positives = 161/309 (52%)
Query: 121 ILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE-NFILPVGYVSDTK-SMYKEVV-LGG 177
ILS + + LL S LL K N + + E + ++ V V Y ++ L
Sbjct: 143 ILSFVDKD--LLEPGCSVLLNNKTNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLES 200
Query: 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG 237
+ ++ + + + + +P Y + G++ +GV+L GPPGTGKTL A+ +A E+ F+ G
Sbjct: 201 QIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 260
Query: 238 AEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATFEAL 292
+E G + EMF +A +AP+ VF+DEIDA+ + A R + T L
Sbjct: 261 SELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLEL 320
Query: 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352
+ QLDG F R V I ATNR D LD +RPGRIDR++ + PD K + +
Sbjct: 321 LNQLDG---------FDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRR 371
Query: 353 IFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412
IF +H++ ++ DV+ EE V SGADI+ + E+G++++R+ KI Q D+
Sbjct: 372 IFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMKITQADLRKAR 431
Query: 413 DKQLLEGMG 421
DK L + G
Sbjct: 432 DKALFQKKG 440
>SGD|S000005785 [details] [associations]
symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IMP] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0019904 "protein domain specific binding"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
Uniprot:P53549
Length = 437
Score = 378 (138.1 bits), Expect = 1.9e-34, P = 1.9e-34
Identities = 91/248 (36%), Positives = 139/248 (56%)
Query: 175 LGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG + +L + + + + NP + G++ +GVLL GPPGTGKTL A+ +A G
Sbjct: 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242
Query: 232 FVFASGAEFTDSEKSGAARI-NEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRR 286
F+F+ + D +ARI EMF+ A+ + P +F+DE+DAI GR + D +
Sbjct: 243 FIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQ 302
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
T L+ Q+DG D +L Q I I ATNRPD LD +RPGR+DR++ I LP+
Sbjct: 303 RTLMELLTQMDG------FD--NLGQTKI-IMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406
R++IF +H+A + + +FE V + GF+GADIRN E+G ++R I
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPD 413
Query: 407 DIVDVLDK 414
D++ + K
Sbjct: 414 DLMKAVRK 421
>ZFIN|ZDB-GENE-030131-304 [details] [associations]
symbol:psmc6 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
Uniprot:Q6DRD2
Length = 389
Score = 377 (137.8 bits), Expect = 2.5e-34, P = 2.5e-34
Identities = 96/275 (34%), Positives = 148/275 (53%)
Query: 150 MAYAENFILPVGY-VS--DTKSM-YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFV 204
M Y + P+ Y +S D S+ Y E+ L + +L + + + + NP + G+
Sbjct: 108 MRYLPREVDPLVYNMSHEDPGSVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPP 167
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAP 263
+G LL GPPGTGKTL AR +A + F+ + D +AR I EMF+ AR + P
Sbjct: 168 KGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQP 227
Query: 264 AFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319
+F+DEIDAI GR + D + T L+ Q+DG F V I A
Sbjct: 228 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG---------FDTLHRVKMIMA 278
Query: 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379
TNRPD LD +RPGR+DR+++I LP+ + R+ I +HS D+++E +V + GF
Sbjct: 279 TNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDGF 338
Query: 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+GAD+RN+ E+G+ ++R H + Q+D + + K
Sbjct: 339 NGADLRNVCTEAGMFAIRADHEYVTQEDFMKAVRK 373
>TAIR|locus:2094892 [details] [associations]
symbol:EMB2083 "embryo defective 2083" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004176 "ATP-dependent peptidase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0004252 "serine-type endopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000023 "maltose metabolic process"
evidence=RCA] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
SMART:SM00382 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AB023046
eggNOG:COG0465 GO:GO:0017111 IPI:IPI00526963 RefSeq:NP_566541.1
UniGene:At.38918 ProteinModelPortal:A8MPR5 SMR:A8MPR5 STRING:A8MPR5
PaxDb:A8MPR5 PRIDE:A8MPR5 EnsemblPlants:AT3G16290.1 GeneID:820876
KEGG:ath:AT3G16290 TAIR:At3g16290 HOGENOM:HOG000015086
InParanoid:A8MPR5 OMA:FFTHGEM PhylomeDB:A8MPR5
ProtClustDB:CLSN2688442 Genevestigator:A8MPR5 Uniprot:A8MPR5
Length = 876
Score = 396 (144.5 bits), Expect = 6.1e-34, P = 6.1e-34
Identities = 115/349 (32%), Positives = 176/349 (50%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L+E++ + + Y RGV+ G+LL GPPG GKTL A+ +A E+G+ F S ++F +
Sbjct: 422 LEEIVKFFTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 481
Query: 243 SEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH-----ARKDPRRRATFEALIAQL 296
GA+R+ ++ AR NAP+ VF+DE+DA+ GR R AT L+ L
Sbjct: 482 IYVGVGASRVRALYQEARENAPSVVFIDELDAV-GRERGLIKGSGGQERDATLNQLLVSL 540
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG F R VI I +TNRPD LD VRPGR DR+++I P R++I V
Sbjct: 541 DG---------FEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQV 591
Query: 357 HSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
H+ K +AED+++ + T G GA++ N+V + I +R G +++ D++
Sbjct: 592 HARKKPMAEDLDYMAVASMTDGMVGAELANIVEIAAINMMRDGRTELTTDDLLQAAQ--- 648
Query: 417 LEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLP-GGKE 475
+E G+L ++ S E R +A++EA V+A FP F + P G+E
Sbjct: 649 IEERGMLDRKDR--------SLETWRQVAINEAAMAVVAVNFPDMKNIEFLTINPRAGRE 700
Query: 476 TAISVFYPREDTIDQGYTTFGYLKMQMVVAH-----GGRCAERLVFGDD 519
Y R +D G L Q ++ H R A+ L +G+D
Sbjct: 701 LG----YVRVK-MDHIKFKEGMLSRQSILDHITVQLAPRAADELWYGED 744
>TAIR|locus:2159996 [details] [associations]
symbol:RPT4A "regulatory particle triple-A ATPase 4A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
Length = 399
Score = 373 (136.4 bits), Expect = 7.0e-34, P = 7.0e-34
Identities = 88/245 (35%), Positives = 134/245 (54%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
LG + +L + + + + NP + G++ +GVLL GPPGTGKTL AR +A F+
Sbjct: 144 LGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 203
Query: 235 ASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATF 289
+ D +AR I EMF+ AR + P +F+DEIDAI GR + D + T
Sbjct: 204 VVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 263
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F V I ATNRPD LD +RPGR+DR++ I LP+ +
Sbjct: 264 MELLNQLDG---------FDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 314
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R+ I +H+AG ++++E +V GF+GAD+RN+ E+G+ ++R + +D +
Sbjct: 315 RMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFM 374
Query: 410 DVLDK 414
+ K
Sbjct: 375 KAVRK 379
>FB|FBgn0015282 [details] [associations]
symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
[GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
Length = 439
Score = 371 (135.7 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 85/238 (35%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 189 LDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 248
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDA+ + + R + T
Sbjct: 249 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTM 308
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 309 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 359
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LAEDVN EL+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 360 KRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 417
>TAIR|locus:2028200 [details] [associations]
symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
"cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
Uniprot:Q9MAK9
Length = 399
Score = 371 (135.7 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 87/245 (35%), Positives = 135/245 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
LG + +L + + + + NP + G++ +GVLL GPPGTGKTL AR +A F+
Sbjct: 144 LGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 203
Query: 235 ASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATF 289
+ D +AR I EMF+ AR + P +F+DEIDAI GR + D + T
Sbjct: 204 VVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 263
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F V I ATNRPD LD +RPGR+DR++ I LP+ +
Sbjct: 264 MELLNQLDG---------FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 314
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R++I +H++G ++++E +V GF+GAD+RN+ E+G+ ++R + +D +
Sbjct: 315 RMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFM 374
Query: 410 DVLDK 414
+ K
Sbjct: 375 KAVRK 379
>UNIPROTKB|F1NSP7 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
Uniprot:F1NSP7
Length = 439
Score = 369 (135.0 bits), Expect = 1.9e-33, P = 1.9e-33
Identities = 84/238 (35%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 189 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 248
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 249 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 308
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 309 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 359
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV +EL+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 360 KKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 417
>UNIPROTKB|F1NTZ4 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
Uniprot:F1NTZ4
Length = 438
Score = 369 (135.0 bits), Expect = 1.9e-33, P = 1.9e-33
Identities = 84/238 (35%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 188 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 247
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 248 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 307
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 308 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 358
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV +EL+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 359 KKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 416
>UNIPROTKB|F1NCS8 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
Uniprot:F1NCS8
Length = 403
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 146 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 205
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 206 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 265
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 266 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 316
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 317 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 376
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 377 VQEDFMKAVRK 387
>UNIPROTKB|Q5ZKX2 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
Uniprot:Q5ZKX2
Length = 389
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 132 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 191
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 192 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 251
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 252 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 302
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 303 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 362
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 363 VQEDFMKAVRK 373
>UNIPROTKB|F1MLV1 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
Length = 389
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 132 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 191
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 192 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 251
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 252 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 302
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 303 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 362
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 363 VQEDFMKAVRK 373
>UNIPROTKB|J9P1N0 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
Uniprot:J9P1N0
Length = 395
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 138 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 197
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 198 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 257
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 258 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 308
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 309 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 368
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 369 VQEDFMKAVRK 379
>UNIPROTKB|P62333 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IC]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
Uniprot:P62333
Length = 389
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 132 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 191
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 192 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 251
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 252 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 302
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 303 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 362
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 363 VQEDFMKAVRK 373
>UNIPROTKB|F1SFE6 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
ArrayExpress:F1SFE6 Uniprot:F1SFE6
Length = 403
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 146 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 205
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 206 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 265
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 266 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 316
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 317 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 376
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 377 VQEDFMKAVRK 387
>UNIPROTKB|P62335 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:43179 "Spermophilus tridecemlineatus" [GO:0022624
"proteasome accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
Length = 389
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 132 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 191
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 192 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 251
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 252 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 302
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 303 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 362
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 363 VQEDFMKAVRK 373
>MGI|MGI:1914339 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
GermOnline:ENSMUSG00000021832 Uniprot:P62334
Length = 389
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 132 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 191
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 192 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 251
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 252 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 302
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 303 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 362
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 363 VQEDFMKAVRK 373
>RGD|1308825 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
Uniprot:Q32PW9
Length = 381
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 124 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 183
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 184 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 243
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 244 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 294
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 295 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 354
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 355 VQEDFMKAVRK 365
>RGD|2318218 [details] [associations]
symbol:LOC100365869 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
Length = 403
Score = 368 (134.6 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/251 (34%), Positives = 137/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 146 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 205
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 206 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 265
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 266 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 316
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+RN+ E+G+ ++R H +
Sbjct: 317 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFV 376
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 377 VQEDFMKAVRK 387
>RGD|727940 [details] [associations]
symbol:Spg7 "spastic paraplegia 7 homolog (human)" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA;ISO] [GO:0008089
"anterograde axon cargo transport" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0031966
"mitochondrial membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 SMART:SM00382 RGD:727940
GO:GO:0016021 GO:GO:0005524 GO:GO:0031966 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 GO:GO:0017111 HSSP:Q9WZ49 MEROPS:M41.006
CTD:6687 KO:K09552 EMBL:AY278739 IPI:IPI00327108 RefSeq:NP_852053.1
UniGene:Rn.16437 ProteinModelPortal:Q7TT47 SMR:Q7TT47 STRING:Q7TT47
PRIDE:Q7TT47 Ensembl:ENSRNOT00000047754 GeneID:353231
KEGG:rno:353231 UCSC:RGD:727940 NextBio:672619 ArrayExpress:Q7TT47
Genevestigator:Q7TT47 Uniprot:Q7TT47
Length = 744
Score = 315 (115.9 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 75/231 (32%), Positives = 124/231 (53%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + Y+ +P ++ + G + +G LL GPPG GKTL A+ +A E+ +PF+ +G EF +
Sbjct: 323 EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVI 382
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDG 298
GAAR+ +F AR AP V++DEIDA+ + + + T L+ ++DG
Sbjct: 383 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDG 442
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
VI + +TNR D LD +RPGR+DR ++I LP ++R +IF+ H
Sbjct: 443 ---------MGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHL 493
Query: 359 AGKQLAEDVNF--EELVFRTVGFSGADIRNLV---NESGIMSVRK-GHSKI 403
G +L + +F + L T GFSG ++ + E +++ + GH+ +
Sbjct: 494 KGLKLTQPSSFYSQRLAELTPGFSGTAKKSKILSKEEQRVVAFHESGHALV 544
Score = 124 (48.7 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 46/137 (33%), Positives = 66/137 (48%)
Query: 431 KCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET-AISVFYPREDTID 489
K + +S E++R++A HE+GH ++ L + + P S PR D
Sbjct: 521 KKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPR----D 576
Query: 490 QGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV--------IS 541
Q T L +M +A GGR AE + F VT G +DDL K+T+IA MV I
Sbjct: 577 QYLFTKEQLFERMCMALGGRAAEAISFSR-VTSGAQDDLRKVTRIAYSMVKQFGMAPSIG 635
Query: 542 PQN---ARLGLAGLTRR 555
P + A+ GL G+ RR
Sbjct: 636 PVSFPEAQEGLVGIGRR 652
>UNIPROTKB|Q7TT47 [details] [associations]
symbol:Spg7 "Paraplegin" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 RGD:727940 GO:GO:0016021 GO:GO:0005524
GO:GO:0031966 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 eggNOG:COG0465 GeneTree:ENSGT00530000063070
HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111 HSSP:Q9WZ49
MEROPS:M41.006 CTD:6687 KO:K09552 EMBL:AY278739 IPI:IPI00327108
RefSeq:NP_852053.1 UniGene:Rn.16437 ProteinModelPortal:Q7TT47
SMR:Q7TT47 STRING:Q7TT47 PRIDE:Q7TT47 Ensembl:ENSRNOT00000047754
GeneID:353231 KEGG:rno:353231 UCSC:RGD:727940 NextBio:672619
ArrayExpress:Q7TT47 Genevestigator:Q7TT47 Uniprot:Q7TT47
Length = 744
Score = 315 (115.9 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 75/231 (32%), Positives = 124/231 (53%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + Y+ +P ++ + G + +G LL GPPG GKTL A+ +A E+ +PF+ +G EF +
Sbjct: 323 EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVI 382
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDG 298
GAAR+ +F AR AP V++DEIDA+ + + + T L+ ++DG
Sbjct: 383 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDG 442
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
VI + +TNR D LD +RPGR+DR ++I LP ++R +IF+ H
Sbjct: 443 ---------MGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHL 493
Query: 359 AGKQLAEDVNF--EELVFRTVGFSGADIRNLV---NESGIMSVRK-GHSKI 403
G +L + +F + L T GFSG ++ + E +++ + GH+ +
Sbjct: 494 KGLKLTQPSSFYSQRLAELTPGFSGTAKKSKILSKEEQRVVAFHESGHALV 544
Score = 124 (48.7 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 46/137 (33%), Positives = 66/137 (48%)
Query: 431 KCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKET-AISVFYPREDTID 489
K + +S E++R++A HE+GH ++ L + + P S PR D
Sbjct: 521 KKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPR----D 576
Query: 490 QGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV--------IS 541
Q T L +M +A GGR AE + F VT G +DDL K+T+IA MV I
Sbjct: 577 QYLFTKEQLFERMCMALGGRAAEAISFSR-VTSGAQDDLRKVTRIAYSMVKQFGMAPSIG 635
Query: 542 PQN---ARLGLAGLTRR 555
P + A+ GL G+ RR
Sbjct: 636 PVSFPEAQEGLVGIGRR 652
>GENEDB_PFALCIPARUM|PF11_0314 [details] [associations]
symbol:PF11_0314 "26S protease subunit
regulatory subunit 6a, putative" species:5833 "Plasmodium
falciparum" [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
EMBL:AE014186 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
Length = 439
Score = 367 (134.2 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 92/301 (30%), Positives = 161/301 (53%)
Query: 116 LPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVV- 174
+PG++ S ++ ++ S L+ K Q +D N + + + Y ++
Sbjct: 136 VPGLIDASELKPGDLVGVNKDSYLIIDKLPQEYD-----NRVKAMEVIEKPSEDYSDIGG 190
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + DL++ +++ M + ++ + G++ +GVL+ GPPGTGKTL AR A ++ F+
Sbjct: 191 LDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQTNATFLK 250
Query: 235 ASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATF 289
+G + GA + + F++A+ APA +F+DE+DAI + D + T
Sbjct: 251 LAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTM 310
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG FS V I ATNRPD LD +R GR+DR++ + P+ +
Sbjct: 311 LELLNQLDG---------FSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEES 361
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R +I +HS + +DVNFEEL T F+GA ++ + E+G++++R+G ++I +D V
Sbjct: 362 RARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEIDHEDFV 421
Query: 410 D 410
+
Sbjct: 422 E 422
>UNIPROTKB|Q8II60 [details] [associations]
symbol:PF11_0314 "26S protease subunit regulatory subunit
6a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000502
"proteasome complex" evidence=ISS] [GO:0004175 "endopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 EMBL:AE014186
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
Length = 439
Score = 367 (134.2 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 92/301 (30%), Positives = 161/301 (53%)
Query: 116 LPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVV- 174
+PG++ S ++ ++ S L+ K Q +D N + + + Y ++
Sbjct: 136 VPGLIDASELKPGDLVGVNKDSYLIIDKLPQEYD-----NRVKAMEVIEKPSEDYSDIGG 190
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + DL++ +++ M + ++ + G++ +GVL+ GPPGTGKTL AR A ++ F+
Sbjct: 191 LDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQTNATFLK 250
Query: 235 ASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATF 289
+G + GA + + F++A+ APA +F+DE+DAI + D + T
Sbjct: 251 LAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTM 310
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG FS V I ATNRPD LD +R GR+DR++ + P+ +
Sbjct: 311 LELLNQLDG---------FSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEES 361
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R +I +HS + +DVNFEEL T F+GA ++ + E+G++++R+G ++I +D V
Sbjct: 362 RARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEIDHEDFV 421
Query: 410 D 410
+
Sbjct: 422 E 422
>UNIPROTKB|A4FUZ3 [details] [associations]
symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
InParanoid:A4FUZ3 Uniprot:A4FUZ3
Length = 440
Score = 366 (133.9 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 83/238 (34%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 190 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>UNIPROTKB|F1PQ40 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
Uniprot:F1PQ40
Length = 440
Score = 366 (133.9 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 83/238 (34%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 190 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>UNIPROTKB|B4DR63 [details] [associations]
symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
Uniprot:B4DR63
Length = 367
Score = 366 (133.9 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 83/238 (34%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 117 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 176
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 177 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 236
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 237 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 287
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 288 KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 345
>UNIPROTKB|P62191 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000209 "protein polyubiquitination"
evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0002474 "antigen processing and presentation of peptide antigen
via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
presentation of exogenous peptide antigen via MHC class I,
TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
Length = 440
Score = 366 (133.9 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 83/238 (34%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 190 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>UNIPROTKB|F2Z5J1 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
KEGG:ssc:100155274 Uniprot:F2Z5J1
Length = 440
Score = 366 (133.9 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 83/238 (34%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 190 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>MGI|MGI:106054 [details] [associations]
symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
"TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
GermOnline:ENSMUSG00000021178 Uniprot:P62192
Length = 440
Score = 366 (133.9 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 83/238 (34%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 190 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>RGD|621097 [details] [associations]
symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
Length = 440
Score = 366 (133.9 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 83/238 (34%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 190 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>UNIPROTKB|Q90732 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
NextBio:20815872 Uniprot:Q90732
Length = 440
Score = 365 (133.5 bits), Expect = 5.4e-33, P = 5.4e-33
Identities = 83/238 (34%), Positives = 132/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L GPPGTGKTL A+ +A ++ F+
Sbjct: 190 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A + P+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ LA+DV +EL+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>DICTYBASE|DDB_G0270784 [details] [associations]
symbol:psmC1 "TAT binding protein alpha"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030587 "sorocarp development"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0270784 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
GO:GO:0030587 GO:GO:0000910 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 HSSP:Q9WZ49 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03062 OMA:FIRNQER RefSeq:XP_646726.1 ProteinModelPortal:Q55BV5
STRING:Q55BV5 PRIDE:Q55BV5 EnsemblProtists:DDB0232964
GeneID:8617698 KEGG:ddi:DDB_G0270784 ProtClustDB:PTZ00361
Uniprot:Q55BV5
Length = 439
Score = 364 (133.2 bits), Expect = 7.0e-33, P = 7.0e-33
Identities = 90/257 (35%), Positives = 141/257 (54%)
Query: 166 TKSMYKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTL 224
T+S Y ++ L V ++ + + + + +P Y E G++ +GV+L G PGTGKTL A+ +
Sbjct: 180 TES-YSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAV 238
Query: 225 AKESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARK 281
A ++ F+ G+E G + E+F +A AP+ VF+DEIDA+ + ++
Sbjct: 239 ANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQS 298
Query: 282 DPRR--RATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRR 339
R + T L+ QLDG F R V I ATNR + LD +RPGRIDR+
Sbjct: 299 GGEREIQRTMLELLNQLDG---------FDARTDVKVIMATNRIETLDPALIRPGRIDRK 349
Query: 340 LYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399
+ LPD K + +IF++H+A L+EDVN EE V SGADI+ + ESG++++R+
Sbjct: 350 IEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRER 409
Query: 400 HSKIQQQDIVDVLDKQL 416
++ D +K L
Sbjct: 410 RMRVTHTDFKKAKEKVL 426
>ASPGD|ASPL0000032311 [details] [associations]
symbol:AN5747 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
Length = 393
Score = 363 (132.8 bits), Expect = 9.0e-33, P = 9.0e-33
Identities = 90/254 (35%), Positives = 136/254 (53%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + +L + + + + NP + G++ +GVLL GPPGTGKTL AR +A F+
Sbjct: 142 LNDQIRELREVIELPLKNPELFQRVGIKPPKGVLLYGPPGTGKTLLARAVASSMETNFLK 201
Query: 235 ASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATF 289
+ D +AR I EMF A+ + P +F+DEIDAI GR + D + T
Sbjct: 202 VVSSAIVDKYIGESARLIREMFGYAKEHEPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 261
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F I ATNRPD LD +R GR+DR++ I LP+
Sbjct: 262 MELLNQLDG---------FDYLGKTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVG 312
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD-- 407
R++I +HS+ Q+ D++FE +V + G +GAD+RN+V E+G+ +++ I Q D
Sbjct: 313 RLEILKIHSSTVQMEGDIDFESVVKMSDGLNGADLRNVVTEAGLFAIKDYRDAINQDDFN 372
Query: 408 --IVDVLDKQLLEG 419
+ V + + LEG
Sbjct: 373 RAVRKVAEAKKLEG 386
>UNIPROTKB|Q2KIW6 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
Length = 389
Score = 361 (132.1 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 86/251 (34%), Positives = 136/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 132 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQL 191
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 192 DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 251
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+++I
Sbjct: 252 EIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID 302
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R+ I +H+ ++++E +V + GF+GAD+ N+ E+G+ ++R H +
Sbjct: 303 LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFV 362
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 363 VQEDFMKAVRK 373
>UNIPROTKB|Q58576 [details] [associations]
symbol:pan "Proteasome-activating nucleotidase"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
"GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
"proteasome-activating nucleotidase complex" evidence=IDA]
[GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
TIGRFAMs:TIGR01242 Uniprot:Q58576
Length = 430
Score = 361 (132.1 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 84/240 (35%), Positives = 133/240 (55%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAAR 250
+P + + G++ +G+LL GPPGTGKTL A+ +A E+ F+ G+E GA+
Sbjct: 192 HPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASL 251
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGID 306
+ ++F +A+ AP+ +F+DEIDAIA + D + T L+A++DG
Sbjct: 252 VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG-------- 303
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R V I ATNRPD LD +RPGR DR + + PD K R++I +H+ LAED
Sbjct: 304 -FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED 362
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
VN EE+ T G GA+++ + E+G+ ++R+ + D ++K ++E V + E
Sbjct: 363 VNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK-IMEKKKVKVKE 421
>UNIPROTKB|Q9FXT8 [details] [associations]
symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
KEGG:osa:4328642 Uniprot:Q9FXT8
Length = 400
Score = 361 (132.1 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 87/245 (35%), Positives = 134/245 (54%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + +L + + + + NP + G++ +GVLL GPPGTGKTL AR +A F+
Sbjct: 145 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 204
Query: 235 ASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATF 289
+ D +AR I EMF AR + P +F+DEIDAI GR + D + T
Sbjct: 205 IVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 264
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG E G V I ATNRPD LD +RPGR+DR++ I LP+ +
Sbjct: 265 MELLNQLDGFDE-LG--------KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQA 315
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R+++ +H+AG ++++E +V GF+GAD+RN+ E+G+ ++R + +D +
Sbjct: 316 RMEVLKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVVHEDFM 375
Query: 410 DVLDK 414
+ K
Sbjct: 376 KAVRK 380
>POMBASE|SPCC1682.16 [details] [associations]
symbol:rpt4 "19S proteasome regulatory subunit Rpt4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISM] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=NAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
NextBio:20800360 Uniprot:O74445
Length = 388
Score = 361 (132.1 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 92/254 (36%), Positives = 140/254 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + +L + + + + NP + G++ +GVLL GPPGTGKTL AR +A G+ F+
Sbjct: 137 LNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLK 196
Query: 235 ASGAEFTDSEKSGAARI-NEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATF 289
+ D +ARI EMF A+ + P +F+DEIDAI GR + D + T
Sbjct: 197 VVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTL 256
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ Q+DG D L Q I I ATNRPD LD +RPGR+DR++ I LP+
Sbjct: 257 MELLNQMDG------FDY--LGQTKI-IMATNRPDTLDPALLRPGRLDRKIEIPLPNEVG 307
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R++I +H ++++E LV T G +GAD+RN+V E+G +++++ + Q D++
Sbjct: 308 RMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLM 367
Query: 410 D----VLDKQLLEG 419
V D + LEG
Sbjct: 368 SAARKVADLKKLEG 381
>DICTYBASE|DDB_G0276917 [details] [associations]
symbol:psmC2 "26S proteasome ATPase 2 subunit"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0000502
"proteasome complex" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0276917 GO:GO:0005524 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0000502 GO:GO:0006511
HSSP:Q9WZ49 EMBL:AAFI02000019 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03061 RefSeq:XP_642830.1 ProteinModelPortal:Q86JA1
STRING:Q86JA1 PRIDE:Q86JA1 EnsemblProtists:DDB0232966
GeneID:8620693 KEGG:ddi:DDB_G0276917 OMA:HIFTIHA
ProtClustDB:CLSZ2429177 Uniprot:Q86JA1
Length = 428
Score = 360 (131.8 bits), Expect = 1.9e-32, P = 1.9e-32
Identities = 88/253 (34%), Positives = 133/253 (52%)
Query: 170 YKEVVLGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
YK+V GG + L + + + + +P ++ G+ +GVL+ GPPGTGKTL AR +A
Sbjct: 169 YKDV--GGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKTLCARAVAN 226
Query: 227 ESGLPFVFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARK 281
+ FV G+E GA + ++F +AR +F DE+DAI G A
Sbjct: 227 RTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGG 286
Query: 282 DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLY 341
D + T LI QLDG F R + + ATNRPD LD +RPGR+DR++
Sbjct: 287 DNEVQRTMLELINQLDG---------FDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVE 337
Query: 342 IGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401
GLPD + R IF +H+ A D+ FE L +GADIR++ E+G+ ++R
Sbjct: 338 FGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRK 397
Query: 402 KIQQQDIVDVLDK 414
+ ++D ++ +DK
Sbjct: 398 VVSEKDFLEAIDK 410
>ZFIN|ZDB-GENE-040625-69 [details] [associations]
symbol:psmc1b "proteasome (prosome, macropain) 26S
subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
Length = 440
Score = 358 (131.1 bits), Expect = 3.2e-32, P = 3.2e-32
Identities = 82/238 (34%), Positives = 133/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L G PGTGKTL A+ +A ++ F+
Sbjct: 190 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ +AEDV+ ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KRRIFQIHTSRMTVAEDVSLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>TAIR|locus:2024822 [details] [associations]
symbol:RPT1A "regulatory particle triple-A 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 EMBL:AC009324 EMBL:AC024260
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123390 EMBL:AY062860 EMBL:BT000069 IPI:IPI00548766
PIR:G96577 RefSeq:NP_175778.1 UniGene:At.66918
ProteinModelPortal:Q9SSB5 SMR:Q9SSB5 IntAct:Q9SSB5 STRING:Q9SSB5
PaxDb:Q9SSB5 PRIDE:Q9SSB5 EnsemblPlants:AT1G53750.1 GeneID:841812
KEGG:ath:AT1G53750 GeneFarm:2748 TAIR:At1g53750 InParanoid:Q9SSB5
KO:K03061 OMA:DIRWELI PhylomeDB:Q9SSB5 ProtClustDB:CLSN2682130
Genevestigator:Q9SSB5 GermOnline:AT1G53750 Uniprot:Q9SSB5
Length = 426
Score = 357 (130.7 bits), Expect = 4.2e-32, P = 4.2e-32
Identities = 82/231 (35%), Positives = 125/231 (54%)
Query: 190 MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GA 248
M +P ++ + G+ +GVL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 188 MLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGA 247
Query: 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308
+ E+F +AR VF DE+DAI G AR D E L+ + +D F
Sbjct: 248 RMVRELFQMARSKKACIVFFDEVDAIGG--ARFDDGVGGDNEVQRTMLEIVNQ---LDGF 302
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
R + + ATNRPD LD +RPGR+DR++ GLPD + R QIF +H+ D+
Sbjct: 303 DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR 362
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
FE L +GADIR++ E+G+ ++R + ++D +D ++K +++G
Sbjct: 363 FELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNK-VIKG 412
>TAIR|locus:2174819 [details] [associations]
symbol:EMB3144 "EMBRYO DEFECTIVE 3144" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005886 "plasma membrane" evidence=ISM] [GO:0006508
"proteolysis" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009790
"embryo development" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0016556
"mRNA modification" evidence=RCA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 EMBL:CP002688
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 GO:GO:0009790
GO:GO:0017111 IPI:IPI00527762 RefSeq:NP_201263.2 UniGene:At.28951
ProteinModelPortal:F4KF14 SMR:F4KF14 PRIDE:F4KF14
EnsemblPlants:AT5G64580.1 GeneID:836579 KEGG:ath:AT5G64580
OMA:LCWISAK Uniprot:F4KF14
Length = 855
Score = 379 (138.5 bits), Expect = 5.1e-32, P = 5.1e-32
Identities = 101/287 (35%), Positives = 155/287 (54%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ + N ++ +G+ +GVLL GPPGTGKTL A+ +A E+GLPF A+G +F +
Sbjct: 328 LQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVE 387
Query: 243 SEKSGAA-RINEMFSIARRNAPAFVFVDEIDAIAGRHARKD-----PRRRATFEALIAQL 296
AA R+ ++F+ +R AP+ +F+DEIDAI + D R ++ ++
Sbjct: 388 MFVGVAASRVKDLFASSRSYAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEM 447
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG K T V+ I ATNR D LD +R GR D+ + +GLP R+ I V
Sbjct: 448 DGFKVTTS--------QVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKV 499
Query: 357 HSAGKQL-AEDVNFE---ELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412
H+ K +ED E E+ T F+GA+++N++NE+GI++ RK I ++++++ L
Sbjct: 500 HARNKFFRSEDEKEELLQEVAENTEDFTGAELQNVLNEAGILTARKDLDYIGREELLEAL 559
Query: 413 DKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFP 459
+Q +G T E Q+ V E K LA EA VLA P
Sbjct: 560 KRQ--KG-----TFETGQEDSTEVPEELKLRLAYREAAVAVLACYLP 599
>DICTYBASE|DDB_G0289003 [details] [associations]
symbol:psmC4 "HIV TAT binding-protein-related"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0006972 "hyperosmotic response"
evidence=IEP] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=ISS] [GO:0005838 "proteasome regulatory
particle" evidence=ISS] [GO:0004175 "endopeptidase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0289003 GO:GO:0005524 GO:GO:0005634
GO:GO:0045335 GO:GO:0006508 GenomeReviews:CM000154_GR GO:GO:0006972
GO:GO:0004175 EMBL:AAFI02000129 GO:GO:0030163 GO:GO:0017111
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03063 OMA:DQTTNVK EMBL:L16578
PIR:JN0611 RefSeq:XP_636422.1 ProteinModelPortal:P34123 SMR:P34123
STRING:P34123 PRIDE:P34123 EnsemblProtists:DDB0191435
GeneID:8626913 KEGG:ddi:DDB_G0289003 ProtClustDB:PTZ00454
GO:GO:0005838 Uniprot:P34123
Length = 403
Score = 354 (129.7 bits), Expect = 9.0e-32, P = 9.0e-32
Identities = 100/295 (33%), Positives = 159/295 (53%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAEN--FILPVGYVSDTKSMYKEVVL 175
+ ILS I RE LL ++S L + N L D E+ I +G Y ++
Sbjct: 98 VRILSTIDRE---LLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIG- 153
Query: 176 GGDVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233
GGD+ ++ + + + + + Y + G+ RGVLL GPPGTGKT+ A+ +A + F+
Sbjct: 154 GGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFI 213
Query: 234 FASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292
G+EF R + ++F +AR N+PA +F+DEIDAIA + R D + A E
Sbjct: 214 RVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATK--RFDAQTGADREVQ 271
Query: 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352
++ + G D S+ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 272 RILMELLNQMDGFD-VSVNVKVIM--ATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRL 328
Query: 353 IFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
IF V ++ L+++V+ E+ V R SGA+I+++ E+G+ ++RK I +D
Sbjct: 329 IFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKD 383
>TAIR|locus:2119926 [details] [associations]
symbol:RPT2a "regulatory particle AAA-ATPase 2A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0009933 "meristem structural organization" evidence=IMP]
[GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0010015 "root
morphogenesis" evidence=IMP] [GO:0010078 "maintenance of root
meristem identity" evidence=IMP] [GO:0010311 "lateral root
formation" evidence=IMP] [GO:0035266 "meristem growth"
evidence=IMP] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048827 "phyllome development" evidence=IMP] [GO:0048829 "root
cap development" evidence=IMP] [GO:0046686 "response to cadmium
ion" evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA]
[GO:0009408 "response to heat" evidence=IMP] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA;IMP] [GO:0043248 "proteasome assembly"
evidence=RCA;IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0051788 "response to misfolded protein" evidence=RCA;IMP]
[GO:0080129 "proteasome core complex assembly" evidence=RCA;IMP]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0007292 "female gamete generation"
evidence=IGI] [GO:0048232 "male gamete generation" evidence=IGI]
[GO:0090351 "seedling development" evidence=IMP] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0009853
"photorespiration" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0051510 "regulation of
unidimensional cell growth" evidence=RCA] [GO:0060968 "regulation
of gene silencing" evidence=IMP] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046686 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0043161 GO:GO:0016020 EMBL:AL078470
EMBL:AL161574 GO:GO:0009408 GO:GO:0010311 GO:GO:0048829
GO:GO:0000502 GO:GO:0043248 GO:GO:0017111 GO:GO:0009965
GO:GO:0009933 EMBL:AL078469 GO:GO:0007292 GO:GO:0060968
GO:GO:0010078 HSSP:P43773 GO:GO:0051788 GO:GO:0090351 GO:GO:0048232
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123391 EMBL:AB161192 EMBL:AY034975 IPI:IPI00538666
PIR:T08959 RefSeq:NP_194633.1 UniGene:At.24596
ProteinModelPortal:Q9SZD4 SMR:Q9SZD4 IntAct:Q9SZD4 STRING:Q9SZD4
PaxDb:Q9SZD4 PRIDE:Q9SZD4 EnsemblPlants:AT4G29040.1 GeneID:829025
KEGG:ath:AT4G29040 GeneFarm:1494 TAIR:At4g29040 InParanoid:Q9SZD4
KO:K03062 OMA:SAIVMEA PhylomeDB:Q9SZD4 ProtClustDB:CLSN2683303
GO:GO:0035266 Uniprot:Q9SZD4
Length = 443
Score = 354 (129.7 bits), Expect = 9.0e-32, P = 9.0e-32
Identities = 84/249 (33%), Positives = 135/249 (54%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y + G++ +GV+L G PGTGKTL A+ +A + F+
Sbjct: 193 LEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 252
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGR----HARKDPRRRATF 289
G+E G + E+F +A +P+ VF+DEIDA+ + H+ + + T
Sbjct: 253 VVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 312
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 313 LELLNQLDG---------FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKT 363
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R +IF +H++ L+EDVN EE V FSGADI+ + E+G++++R+ K+ D
Sbjct: 364 RRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFK 423
Query: 410 DVLDKQLLE 418
+K + +
Sbjct: 424 KAKEKVMFK 432
>WB|WBGene00004504 [details] [associations]
symbol:rpt-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 354 (129.7 bits), Expect = 9.0e-32, P = 9.0e-32
Identities = 91/251 (36%), Positives = 138/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y +V L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 149 YSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQL 208
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P VF+DEIDAI GR + D
Sbjct: 209 DCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADR 268
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ QLDG D SL + + I ATNRPD LD +RPGR+DR++ IG
Sbjct: 269 EIQRTLMELLNQLDG------FD--SLGKVKV-IMATNRPDTLDPALLRPGRLDRKIEIG 319
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R++I +HS +++FE +V + GFS AD+RN+ E+G+ ++R +
Sbjct: 320 LPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFV 379
Query: 404 QQQDIVDVLDK 414
+D + + K
Sbjct: 380 IDEDFMKAVRK 390
>WB|WBGene00015688 [details] [associations]
symbol:C10G11.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
GeneTree:ENSGT00550000074818 HSSP:Q9LCZ4 EMBL:FO080499 PIR:D87802
RefSeq:NP_491811.1 ProteinModelPortal:P91025 SMR:P91025
STRING:P91025 PaxDb:P91025 EnsemblMetazoa:C10G11.8 GeneID:172324
KEGG:cel:CELE_C10G11.8 UCSC:C10G11.8 CTD:172324 WormBase:C10G11.8
InParanoid:P91025 OMA:RGIENAN NextBio:875027 Uniprot:P91025
Length = 438
Score = 354 (129.7 bits), Expect = 9.0e-32, P = 9.0e-32
Identities = 81/255 (31%), Positives = 138/255 (54%)
Query: 175 LGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG + +L + + + + +P Y E G+ +GV+L G PGTGKTL A+ +A +
Sbjct: 185 IGGCESQIQELKESVELPLTHPEYYEEMGITAPKGVILYGEPGTGKTLLAKAVANSTSAT 244
Query: 232 FVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRR 286
F+ A+G++ + AR + ++F +A+ AP+ VF+DEIDA+ + +R + +
Sbjct: 245 FIRATGSDLVQKQSGEGARLVRQIFQMAKEQAPSIVFIDEIDAVGTKRFDTSSRGEQEVQ 304
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
T L+ QLDG F R V I ATNR D LD +RPGRIDR++ + PD
Sbjct: 305 RTLLELLNQLDG---------FESRGDVKIIMATNRIDSLDPALIRPGRIDRKIELPKPD 355
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406
K R +IF +H++G + + V +E ++ + SGA+I+ + E+G++++R +
Sbjct: 356 EKTRQKIFTIHTSGMTIQKAVTYENVLGKEKSISGAEIKAVCTEAGMLALRAQRKCVGTD 415
Query: 407 DIVDVLDKQLLEGMG 421
D + +L G
Sbjct: 416 DFEKAVKSVMLSKKG 430
>UNIPROTKB|O17071 [details] [associations]
symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 354 (129.7 bits), Expect = 9.0e-32, P = 9.0e-32
Identities = 91/251 (36%), Positives = 138/251 (54%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y +V L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 149 YSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQL 208
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P VF+DEIDAI GR + D
Sbjct: 209 DCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADR 268
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ QLDG D SL + + I ATNRPD LD +RPGR+DR++ IG
Sbjct: 269 EIQRTLMELLNQLDG------FD--SLGKVKV-IMATNRPDTLDPALLRPGRLDRKIEIG 319
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ + R++I +HS +++FE +V + GFS AD+RN+ E+G+ ++R +
Sbjct: 320 LPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFV 379
Query: 404 QQQDIVDVLDK 414
+D + + K
Sbjct: 380 IDEDFMKAVRK 390
>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
symbol:psmc1a "proteasome (prosome, macropain) 26S
subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
Length = 440
Score = 354 (129.7 bits), Expect = 9.0e-32, P = 9.0e-32
Identities = 81/238 (34%), Positives = 132/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L G PGTGKTL A+ +A ++ F+
Sbjct: 190 LDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 249
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +AP+ VF+DEIDAI + + R + T
Sbjct: 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 310 LELLNQLDG---------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ +A+DV ++L+ SGADI+ + E+G+M++R+ K+ +D
Sbjct: 361 KRRIFQIHTSRMTVADDVTLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
>TAIR|locus:2061639 [details] [associations]
symbol:RPT2b "regulatory particle AAA-ATPase 2b"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007292
"female gamete generation" evidence=IGI] [GO:0010078 "maintenance
of root meristem identity" evidence=IMP] [GO:0048232 "male gamete
generation" evidence=IGI] [GO:0042023 "DNA endoreduplication"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 EMBL:AC006081 GO:GO:0007292
GO:GO:0010078 HSSP:P43773 GO:GO:0048232 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 UniGene:At.24596 KO:K03062
ProtClustDB:CLSN2683303 EMBL:AF372977 EMBL:AY035072 EMBL:AY056335
EMBL:AY087584 IPI:IPI00521093 PIR:E84585 RefSeq:NP_179604.1
UniGene:At.13496 ProteinModelPortal:Q9SL67 SMR:Q9SL67 IntAct:Q9SL67
STRING:Q9SL67 PaxDb:Q9SL67 PRIDE:Q9SL67 EnsemblPlants:AT2G20140.1
GeneID:816533 KEGG:ath:AT2G20140 GeneFarm:1495 TAIR:At2g20140
InParanoid:Q9SL67 OMA:FIRNQER PhylomeDB:Q9SL67 Uniprot:Q9SL67
Length = 443
Score = 353 (129.3 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 86/249 (34%), Positives = 134/249 (53%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y + G++ +GV+L G PGTGKTL A+ +A + F+
Sbjct: 193 LEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 252
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A +P+ VF+DEIDA+ + A R + T
Sbjct: 253 VVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTM 312
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATNR + LD +RPGRIDR++ LPD K
Sbjct: 313 LELLNQLDG---------FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKT 363
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R +IF +H++ LAEDVN EE V FSGADI+ + E+G++++R+ K+ D
Sbjct: 364 RRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFK 423
Query: 410 DVLDKQLLE 418
+K + +
Sbjct: 424 KAKEKVMFK 432
>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory
subunit 7, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
Uniprot:Q8IEK3
Length = 420
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 79/223 (35%), Positives = 119/223 (53%)
Query: 193 PMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARI 251
P ++ G+ +GVLL GPPGTGKTL AR +A + F+ G+E GA +
Sbjct: 185 PERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMV 244
Query: 252 NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311
E+F +A+ +F+DE+DAI G +R D E L+ + G D R
Sbjct: 245 RELFQMAKSKKACILFIDEVDAIGG--SRGDESAHGDHEVQRTMLEIVNQLDGFDN---R 299
Query: 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEE 371
+ + ATNRPD LD VRPGRIDRR+ LPD + R IF +H+ ++ DV FE
Sbjct: 300 GNIKVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFEL 359
Query: 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
L +G+DIR++ E+G+ ++R I ++D++ ++K
Sbjct: 360 LARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINK 402
>UNIPROTKB|F1MG70 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
Length = 417
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 102/296 (34%), Positives = 160/296 (54%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS--MYKEVVL 175
+ ILS I RE LL +S L+K N L D+ E + SD K MY ++
Sbjct: 112 VRILSTIDRE---LLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADI-- 166
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 167 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 226
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 227 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 284
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ ++ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 285 QRILLELLNQMDGFDQ-NVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 341
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
IF ++ L+E+V+ E+ V R SGADI ++ ESG+++VR+ + +D
Sbjct: 342 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKD 397
>UNIPROTKB|Q3T030 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
ArrayExpress:Q3T030 Uniprot:Q3T030
Length = 418
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 102/296 (34%), Positives = 160/296 (54%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS--MYKEVVL 175
+ ILS I RE LL +S L+K N L D+ E + SD K MY ++
Sbjct: 113 VRILSTIDRE---LLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADI-- 167
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 285
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ ++ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 286 QRILLELLNQMDGFDQ-NVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 342
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
IF ++ L+E+V+ E+ V R SGADI ++ ESG+++VR+ + +D
Sbjct: 343 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKD 398
>UNIPROTKB|E2RH48 [details] [associations]
symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
Length = 418
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 102/296 (34%), Positives = 160/296 (54%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS--MYKEVVL 175
+ ILS I RE LL +S L+K N L D+ E + SD K MY ++
Sbjct: 113 VRILSTIDRE---LLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADI-- 167
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 285
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ ++ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 286 QRILLELLNQMDGFDQ-NVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 342
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
IF ++ L+E+V+ E+ V R SGADI ++ ESG+++VR+ + +D
Sbjct: 343 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKD 398
>UNIPROTKB|P43686 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
"ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006521 "regulation of cellular amino acid metabolic process"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=TAS]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
Uniprot:P43686
Length = 418
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 102/296 (34%), Positives = 160/296 (54%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS--MYKEVVL 175
+ ILS I RE LL +S L+K N L D+ E + SD K MY ++
Sbjct: 113 VRILSTIDRE---LLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADI-- 167
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 285
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ ++ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 286 QRILLELLNQMDGFDQ-NVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 342
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
IF ++ L+E+V+ E+ V R SGADI ++ ESG+++VR+ + +D
Sbjct: 343 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKD 398
>UNIPROTKB|Q4R7L3 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
Length = 418
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 102/296 (34%), Positives = 160/296 (54%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS--MYKEVVL 175
+ ILS I RE LL +S L+K N L D+ E + SD K MY ++
Sbjct: 113 VRILSTIDRE---LLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADI-- 167
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 285
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ ++ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 286 QRILLELLNQMDGFDQ-NVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 342
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
IF ++ L+E+V+ E+ V R SGADI ++ ESG+++VR+ + +D
Sbjct: 343 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKD 398
>UNIPROTKB|Q8IEK3 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory subunit 7,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
Length = 420
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 79/223 (35%), Positives = 119/223 (53%)
Query: 193 PMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARI 251
P ++ G+ +GVLL GPPGTGKTL AR +A + F+ G+E GA +
Sbjct: 185 PERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMV 244
Query: 252 NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311
E+F +A+ +F+DE+DAI G +R D E L+ + G D R
Sbjct: 245 RELFQMAKSKKACILFIDEVDAIGG--SRGDESAHGDHEVQRTMLEIVNQLDGFDN---R 299
Query: 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEE 371
+ + ATNRPD LD VRPGRIDRR+ LPD + R IF +H+ ++ DV FE
Sbjct: 300 GNIKVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFEL 359
Query: 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
L +G+DIR++ E+G+ ++R I ++D++ ++K
Sbjct: 360 LARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINK 402
>MGI|MGI:1346093 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
Uniprot:P54775
Length = 418
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 102/296 (34%), Positives = 160/296 (54%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS--MYKEVVL 175
+ ILS I RE LL +S L+K N L D+ E + SD K MY ++
Sbjct: 113 VRILSTIDRE---LLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADI-- 167
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 285
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ ++ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 286 QRILLELLNQMDGFDQ-NVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 342
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
IF ++ L+E+V+ E+ V R SGADI ++ ESG+++VR+ + +D
Sbjct: 343 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKD 398
>RGD|621102 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
"blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
GermOnline:ENSRNOG00000018994 Uniprot:Q63570
Length = 418
Score = 352 (129.0 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 102/296 (34%), Positives = 160/296 (54%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS--MYKEVVL 175
+ ILS I RE LL +S L+K N L D+ E + SD K MY ++
Sbjct: 113 VRILSTIDRE---LLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADI-- 167
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 285
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ ++ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 286 QRILLELLNQMDGFDQ-NVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 342
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
IF ++ L+E+V+ E+ V R SGADI ++ ESG+++VR+ + +D
Sbjct: 343 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKD 398
>DICTYBASE|DDB_G0284517 [details] [associations]
symbol:psmC6 "26S protease regulatory subunit S10B"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
Length = 393
Score = 351 (128.6 bits), Expect = 1.9e-31, P = 1.9e-31
Identities = 100/302 (33%), Positives = 157/302 (51%)
Query: 120 LILSLIRETVMLLHITSSRLLYKKYNQL-FDMAYAENFILPVGYVSDTKSMYKEVV-LGG 177
L++ R T+ L +T ++L ++ + + F+M AE+ P G VS Y E+ L
Sbjct: 95 LLVPGARVTLDLTTLTILKILPREVDPIIFNMT-AES---P-GSVS-----YGEIGGLSN 144
Query: 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG 237
+ +L + + + + P + G++ +GVLL GPPGTGKTL AR +A F+
Sbjct: 145 QIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVS 204
Query: 238 AEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEAL 292
+ D +AR I EMF AR + P +F+DEIDAI GR + D + T L
Sbjct: 205 SAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 264
Query: 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352
+ Q+DG F V I ATNRPD LD +RPGR+DR++ I LP+ RV
Sbjct: 265 LNQMDG---------FDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVD 315
Query: 353 IFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412
+ +H+A DV++E + GF+ AD+RN+ E+G+ ++R + ++D + +
Sbjct: 316 VLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAV 375
Query: 413 DK 414
K
Sbjct: 376 RK 377
>SGD|S000002284 [details] [associations]
symbol:CDC48 "AAA ATPase involved in multiple processes"
species:4932 "Saccharomyces cerevisiae" [GO:0005829 "cytosol"
evidence=IDA] [GO:0043332 "mating projection tip" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0030433 "ER-associated protein catabolic process"
evidence=IMP] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:1900182 "positive regulation of
protein localization to nucleus" evidence=IMP] [GO:0051228 "mitotic
spindle disassembly" evidence=IMP] [GO:0016320 "endoplasmic
reticulum membrane fusion" evidence=IMP] [GO:0034517 "ribophagy"
evidence=IMP] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0043130 "ubiquitin binding" evidence=IDA]
[GO:0036266 "Cdc48p-Npl4p-Vms1p AAA ATPase complex" evidence=IDA]
[GO:0071630 "nucleus-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IMP] [GO:0016236
"macroautophagy" evidence=IMP] [GO:0031134 "sister chromatid
biorientation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0072671 "mitochondria-associated protein
catabolic process" evidence=IMP] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 SGD:S000002284 Pfam:PF02359
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0043332
EMBL:BK006938 GO:GO:0016887 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0016236 GO:GO:0031134
GO:GO:0043130 GO:GO:0034727 GO:GO:0016320 GO:GO:0034517
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OrthoDB:EOG47H8Z3 GO:GO:0034098 GO:GO:0030970
EMBL:X56956 EMBL:Z74174 PIR:S67669 RefSeq:NP_010157.1
ProteinModelPortal:P25694 SMR:P25694 DIP:DIP-2704N IntAct:P25694
MINT:MINT-547129 STRING:P25694 TCDB:3.A.16.1.2 PaxDb:P25694
PeptideAtlas:P25694 PRIDE:P25694 EnsemblFungi:YDL126C GeneID:851431
KEGG:sce:YDL126C CYGD:YDL126c GeneTree:ENSGT00700000104534
OMA:TIPRITW NextBio:968654 Genevestigator:P25694 GermOnline:YDL126C
GO:GO:0036266 GO:GO:0000837 GO:GO:0071629 GO:GO:0071712
GO:GO:0072671 GO:GO:0051228 GO:GO:0071630 GO:GO:1900182
Uniprot:P25694
Length = 835
Score = 372 (136.0 bits), Expect = 3.0e-31, P = 3.0e-31
Identities = 93/274 (33%), Positives = 152/274 (55%)
Query: 154 ENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
EN + VGY D K++ + ++++ + + +P + G++ RGVL+ GPP
Sbjct: 205 ENNMNEVGY-DDIGGCRKQMA---QIREMVE---LPLRHPQLFKAIGIKPPRGVLMYGPP 257
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARIN--EMFSIARRNAPAFVFVDEI 271
GTGKTL AR +A E+G F +G E S+ +G + N + F A +NAPA +F+DEI
Sbjct: 258 GTGKTLMARAVANETGAFFFLINGPEVM-SKMAGESESNLRKAFEEAEKNAPAIIFIDEI 316
Query: 272 DAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330
D+IA + + + R L+ +DG K R+ V+ I ATNRP+ +D
Sbjct: 317 DSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSN---------VVVIAATNRPNSIDPAL 367
Query: 331 VRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390
R GR DR + IG+PDA R+++ +H+ +LA+DV+ E L T G+ GADI +L +E
Sbjct: 368 RRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEALAAETHGYVGADIASLCSE 427
Query: 391 SGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424
+ + +R+ I + D +D ++L+ +GV +
Sbjct: 428 AAMQQIREKMDLIDLDE--DEIDAEVLDSLGVTM 459
Score = 300 (110.7 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 103/354 (29%), Positives = 169/354 (47%)
Query: 96 EVDL-LQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
+VDL + H ++ IA L + IRE + L+ + + + + L +
Sbjct: 403 DVDLEALAAETHGYVGADIASLCSEAAMQQIREKMDLIDLDEDEIDAEVLDSLG--VTMD 460
Query: 155 NFILPVGYVSDTKSMYKEVVLGGDV-WDL---LDEL-------MIY-MGNPMQYYERGVQ 202
NF +G S+ ++ + VV +V WD LDE+ + Y + +P QY + G+
Sbjct: 461 NFRFALGN-SNPSALRETVVESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLS 519
Query: 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRN 261
+GVL GPPGTGKTL A+ +A E F+ G E + I ++F AR
Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579
Query: 262 APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321
AP VF+DE+D+IA + ++ QL T +D + ++ V I ATN
Sbjct: 580 APTVVFLDELDSIAKARGGSLGDAGGASDRVVNQL-----LTEMDGMNAKKNVFVIGATN 634
Query: 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG 381
RPD++D +RPGR+D+ +Y+ LPD R+ I + L + + T GFSG
Sbjct: 635 RPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSG 694
Query: 382 ADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL-LEGMGVLLTEEEQQKCEQ 434
AD+ +V + +++ +Q + +K++ +EG V +T+E K EQ
Sbjct: 695 ADLLYIVQRAAKYAIKDSIEAHRQHEA----EKEVKVEGEDVEMTDEGA-KAEQ 743
>CGD|CAL0001552 [details] [associations]
symbol:PR26 species:5476 "Candida albicans" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0001552 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
Length = 411
Score = 349 (127.9 bits), Expect = 3.2e-31, P = 3.2e-31
Identities = 103/309 (33%), Positives = 161/309 (52%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMA--YAENFILPVGYVSDTKSMYKEVVL 175
+ ILS + RE LL +SS L++ N L D+ A++ I VG Y +V
Sbjct: 103 VRILSTLDRE---LLKASSSVALHRHSNALVDILPPEADSSISIVGEDQKPDVTYADV-- 157
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + Y + G+ RGVLL GPPGTGKT+ + +A + F
Sbjct: 158 GGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASF 217
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ +G+EF G + ++F +AR N+PA +F+DEIDAIA + R D + A E
Sbjct: 218 IRINGSEFVQKYLGEGPRMVRDVFRLARENSPAIIFIDEIDAIATK--RFDAQTGADREV 275
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL-YIGLPDAKQR 350
L+ + G D+ S V I ATNR D LD +RPGR+DR++ + L D ++R
Sbjct: 276 QRILLELLNQMDGFDQTS---TVKVIMATNRADTLDPALLRPGRLDRKIEFPSLKDRRER 332
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410
IF ++ LA + + + L+ R SGA I ++ E+G+ +VRK I Q D+ +
Sbjct: 333 RLIFSTIASKMSLAPEADLDSLIIRNDPLSGAVIAAIMQEAGLRAVRKNRYMILQSDLEE 392
Query: 411 VLDKQLLEG 419
Q+ G
Sbjct: 393 AYTSQVKTG 401
>UNIPROTKB|Q5A0L8 [details] [associations]
symbol:PR26 "Likely 26S proteasome regulatory particle
ATPase Rpt3p" species:237561 "Candida albicans SC5314" [GO:0005838
"proteasome regulatory particle" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0001552
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
Length = 411
Score = 349 (127.9 bits), Expect = 3.2e-31, P = 3.2e-31
Identities = 103/309 (33%), Positives = 161/309 (52%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMA--YAENFILPVGYVSDTKSMYKEVVL 175
+ ILS + RE LL +SS L++ N L D+ A++ I VG Y +V
Sbjct: 103 VRILSTLDRE---LLKASSSVALHRHSNALVDILPPEADSSISIVGEDQKPDVTYADV-- 157
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + Y + G+ RGVLL GPPGTGKT+ + +A + F
Sbjct: 158 GGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASF 217
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ +G+EF G + ++F +AR N+PA +F+DEIDAIA + R D + A E
Sbjct: 218 IRINGSEFVQKYLGEGPRMVRDVFRLARENSPAIIFIDEIDAIATK--RFDAQTGADREV 275
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL-YIGLPDAKQR 350
L+ + G D+ S V I ATNR D LD +RPGR+DR++ + L D ++R
Sbjct: 276 QRILLELLNQMDGFDQTS---TVKVIMATNRADTLDPALLRPGRLDRKIEFPSLKDRRER 332
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410
IF ++ LA + + + L+ R SGA I ++ E+G+ +VRK I Q D+ +
Sbjct: 333 RLIFSTIASKMSLAPEADLDSLIIRNDPLSGAVIAAIMQEAGLRAVRKNRYMILQSDLEE 392
Query: 411 VLDKQLLEG 419
Q+ G
Sbjct: 393 AYTSQVKTG 401
>GENEDB_PFALCIPARUM|PF13_0033 [details] [associations]
symbol:PF13_0033 "26S proteasome regulatory
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853
GO:GO:0017111 EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 OMA:EHKEVES ProtClustDB:CLSZ2429012
GO:GO:0005838 RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1
PRIDE:Q8IEQ1 EnsemblProtists:PF13_0033:mRNA GeneID:814012
KEGG:pfa:PF13_0033 EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
Length = 393
Score = 348 (127.6 bits), Expect = 4.1e-31, P = 4.1e-31
Identities = 92/282 (32%), Positives = 144/282 (51%)
Query: 144 YNQLFDMAYAENFILPVGYVSDTKSMYKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQ 202
+N + D+ +EN S K Y ++ L + + + + + + NP Y G++
Sbjct: 118 FNMISDIDKSEN--------STNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIK 169
Query: 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI-NEMFSIARRN 261
+GVLL GPPGTGKTL AR +A F+ + D +ARI EMF+ A+ +
Sbjct: 170 TPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEH 229
Query: 262 APAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317
P +F+DEIDAI GR + D + T L+ LDG +E + I
Sbjct: 230 QPCIIFMDEIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVK---------II 280
Query: 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTV 377
ATNRPD LD VRPGR+DR++ I LP+ R++I +H+ D+++E +
Sbjct: 281 MATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCD 340
Query: 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
GF+GAD+RN+ E+G+ ++R + ++D K + EG
Sbjct: 341 GFNGADLRNVCTEAGMFAIRAMRDYVIEEDFYKAARK-ISEG 381
>UNIPROTKB|Q8IEQ1 [details] [associations]
symbol:PF13_0033 "26S proteasome regulatory subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
OMA:EHKEVES ProtClustDB:CLSZ2429012 GO:GO:0005838
RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1 PRIDE:Q8IEQ1
EnsemblProtists:PF13_0033:mRNA GeneID:814012 KEGG:pfa:PF13_0033
EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
Length = 393
Score = 348 (127.6 bits), Expect = 4.1e-31, P = 4.1e-31
Identities = 92/282 (32%), Positives = 144/282 (51%)
Query: 144 YNQLFDMAYAENFILPVGYVSDTKSMYKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQ 202
+N + D+ +EN S K Y ++ L + + + + + + NP Y G++
Sbjct: 118 FNMISDIDKSEN--------STNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIK 169
Query: 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI-NEMFSIARRN 261
+GVLL GPPGTGKTL AR +A F+ + D +ARI EMF+ A+ +
Sbjct: 170 TPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEH 229
Query: 262 APAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317
P +F+DEIDAI GR + D + T L+ LDG +E + I
Sbjct: 230 QPCIIFMDEIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVK---------II 280
Query: 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTV 377
ATNRPD LD VRPGR+DR++ I LP+ R++I +H+ D+++E +
Sbjct: 281 MATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCD 340
Query: 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
GF+GAD+RN+ E+G+ ++R + ++D K + EG
Sbjct: 341 GFNGADLRNVCTEAGMFAIRAMRDYVIEEDFYKAARK-ISEG 381
>WB|WBGene00004506 [details] [associations]
symbol:rpt-6 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
Uniprot:Q9XTT9
Length = 416
Score = 330 (121.2 bits), Expect = 7.9e-31, Sum P(2) = 7.9e-31
Identities = 83/247 (33%), Positives = 131/247 (53%)
Query: 168 SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225
S Y E+V G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL AR +A
Sbjct: 156 STY-EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLFGPPGTGKTLLARAVA 214
Query: 226 KESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--- 281
+ F+ SG+E GA + E+F +AR +AP+ +F+DEID+I
Sbjct: 215 HHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSG 274
Query: 282 -DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ QLDG F + + I ATNR D LD +RPGRIDR++
Sbjct: 275 GDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILDPALLRPGRIDRKI 325
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
PD K R I +HS L +N ++ + G SGA+++++ E+G+ ++R+
Sbjct: 326 EFPAPDEKARADILKIHSRKMNLMRGINMAKIAEQIPGASGAEVKSVCTEAGMFALRERR 385
Query: 401 SKIQQQD 407
+ Q+D
Sbjct: 386 IHVTQED 392
Score = 38 (18.4 bits), Expect = 7.9e-31, Sum P(2) = 7.9e-31
Identities = 33/136 (24%), Positives = 60/136 (44%)
Query: 5 EKSLRK-------DMVEKVTE-TQGTRALWIAKRWWRYRPKLPYTYFLEKL--DSSEVAA 54
EK+LRK D +KV + +Q R L + + ++ L++L S V
Sbjct: 27 EKTLRKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRM-LKEELQQLHEQGSYVGE 85
Query: 55 VVFTEDLKRLYVTMK-EGFPLEYVVDIPLDPYLFETIASSGAEVDL-LQKRQIHYFLKVL 112
V D K++ V + EG +YVVD+ D + ++GA V L +H L
Sbjct: 86 VSKAMDKKKVLVKVHPEG---KYVVDV--DKSIDINSLNTGARVALRADSYALHKLLPNK 140
Query: 113 IALLPGILILSLIRET 128
+ L ++++ + ++
Sbjct: 141 VDPLVSLMMVEKVPDS 156
>FB|FBgn0036224 [details] [associations]
symbol:Rpt4R "Regulatory particle triple-A ATPase 4-related"
species:7227 "Drosophila melanogaster" [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014296
GO:GO:0006200 GO:GO:0006974 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 EMBL:AY089267 RefSeq:NP_648525.1
UniGene:Dm.5141 SMR:Q9VTQ9 IntAct:Q9VTQ9 MINT:MINT-869141
STRING:Q9VTQ9 EnsemblMetazoa:FBtr0076040 GeneID:39351
KEGG:dme:Dmel_CG7257 UCSC:CG7257-RA CTD:39351 FlyBase:FBgn0036224
InParanoid:Q9VTQ9 OMA:CAIWTEA OrthoDB:EOG4VT4CM GenomeRNAi:39351
NextBio:813228 Uniprot:Q9VTQ9
Length = 398
Score = 345 (126.5 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 87/251 (34%), Positives = 134/251 (53%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y E+ LG + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A +
Sbjct: 141 YAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQM 200
Query: 229 GLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DP 283
F+ + D +AR I EMF+ AR + P +F+DEIDAI GR + D
Sbjct: 201 DANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 260
Query: 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
+ T L+ Q+DG F V I ATNRPD LD +RPGR+DR+L I
Sbjct: 261 EIQRTLMELLNQMDG---------FDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIP 311
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP+ R+ I +H+ ++++E +V + F+GAD+RN+ E+G+ ++R +
Sbjct: 312 LPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREFV 371
Query: 404 QQQDIVDVLDK 414
Q+D + + K
Sbjct: 372 IQEDFMKAVRK 382
>POMBASE|SPBC23G7.12c [details] [associations]
symbol:rpt6 "19S proteasome regulatory subunit Rpt6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
Length = 403
Score = 345 (126.5 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 107/392 (27%), Positives = 193/392 (49%)
Query: 42 YFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFP-----LEYVVDIPLDP--YLFETIASSG 94
Y+ +K+ +E+A + T++L+RL + G L + + +P Y+ E I + G
Sbjct: 19 YYTQKIQDAELAILQKTQNLRRLEA-QRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMG 77
Query: 95 AEVDLLQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
L++ +H K ++ + P I I + + L S +L+ N++ +
Sbjct: 78 KNKVLVK---VHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVS-- 132
Query: 155 NFILPVGYVSDTKSMYKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
++ V + D S Y+ V L + ++ + + + + +P + G+ +G+LL GPP
Sbjct: 133 --LMMVEKIPD--STYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPP 188
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEID 272
GTGKTL AR +A + F+ SG+E G+ + E+F +AR +AP+ +F+DEID
Sbjct: 189 GTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 248
Query: 273 AIAGRHARK-----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327
+I + D + T L+ QLDG F + + I ATNR D LD
Sbjct: 249 SIGSSRSDSSGGSGDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILD 299
Query: 328 LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNL 387
+RPGRIDR++ P A+ R +I +HS L ++ + + + G SGA+++ +
Sbjct: 300 PALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGV 359
Query: 388 VNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
E+G+ ++R+ + Q+D + K L +G
Sbjct: 360 CTEAGMFALRERRVHVTQEDFELAVAKVLNKG 391
>WB|WBGene00004502 [details] [associations]
symbol:rpt-2 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
NextBio:903424 Uniprot:O16368
Length = 443
Score = 345 (126.5 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 79/238 (33%), Positives = 131/238 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L G PGTGKTL A+ +A ++ F+
Sbjct: 193 LDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLR 252
Query: 235 ASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR--RATF 289
G+E G + E+F +A NAP+ VF+DEIDA+ + + R + T
Sbjct: 253 IVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTM 312
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V + ATNR + LD +RPGRIDR++ LPD K
Sbjct: 313 LELLNQLDG---------FDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKT 363
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +IF +H++ L ++VN EE + SGADI+ + E+G++++R+ ++ +D
Sbjct: 364 KRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMED 421
>CGD|CAL0000732 [details] [associations]
symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 366 (133.9 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 89/272 (32%), Positives = 152/272 (55%)
Query: 154 ENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
EN + VGY D K++ + +L++ + + +P + G++ +G+L+ GPP
Sbjct: 206 ENSLNEVGY-DDIGGCKKQMA---QIRELVE---LPLRHPQLFKSIGIKPPKGILMYGPP 258
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARIN--EMFSIARRNAPAFVFVDEI 271
GTGKT+ AR +A E+G F +G E S+ +G + N + F A +N+P+ +F+DEI
Sbjct: 259 GTGKTIMARAVANETGAFFFLINGPEIM-SKMAGESESNLRKAFEEAEKNSPSIIFIDEI 317
Query: 272 DAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330
D+IA + + + R L+ +DG K R+ V+ I ATNRP+ +D
Sbjct: 318 DSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSN---------VVVIAATNRPNSIDPAL 368
Query: 331 VRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390
R GR DR + IG+PDA+ R++I +H+ +LA+DV+ E + T GF GADI +L +E
Sbjct: 369 RRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIASETHGFVGADIASLCSE 428
Query: 391 SGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGV 422
+ + +R+ I ++ + +D ++L +GV
Sbjct: 429 AAMQQIREKMDLIDLEE--ETIDTEVLNSLGV 458
Score = 316 (116.3 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 102/350 (29%), Positives = 167/350 (47%)
Query: 96 EVDLLQ-KRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
+VDL + H F+ IA L + IRE + L+ + + + N L +
Sbjct: 404 DVDLEAIASETHGFVGADIASLCSEAAMQQIREKMDLIDLEEETIDTEVLNSLG--VTQD 461
Query: 155 NFILPVGYVSDTKSMYKEVVLGGDV-WD----L------LDELMIY-MGNPMQYYERGVQ 202
NF +G S+ ++ + VV +V WD L L E + Y + +P QY + G+
Sbjct: 462 NFRFALGN-SNPSALRETVVENVNVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLA 520
Query: 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRN 261
+GVL GPPGTGKTL A+ +A E F+ G E + I ++F AR
Sbjct: 521 PTKGVLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 580
Query: 262 APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321
AP VF+DE+D+IA + ++ QL T +D + ++ V I ATN
Sbjct: 581 APTVVFLDELDSIAKARGGSHGDAGGASDRVVNQL-----LTEMDGMNAKKNVFVIGATN 635
Query: 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG 381
RPD++D +RPGR+D+ +Y+ LPD R+ I L ++ E+ T GFSG
Sbjct: 636 RPDQIDPALLRPGRLDQLIYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKITHGFSG 695
Query: 382 ADIRNLVNESGIMSVRKG-HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQ 430
AD+ +V S +++ ++++ I + +K E + + + E E++
Sbjct: 696 ADLSYIVQRSAKFAIKDSIEAQVKINKIKEEKEKVKTEDVDMKVDEVEEE 745
>UNIPROTKB|Q59WG3 [details] [associations]
symbol:CDC48 "Putative uncharacterized protein CDC48"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 366 (133.9 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 89/272 (32%), Positives = 152/272 (55%)
Query: 154 ENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
EN + VGY D K++ + +L++ + + +P + G++ +G+L+ GPP
Sbjct: 206 ENSLNEVGY-DDIGGCKKQMA---QIRELVE---LPLRHPQLFKSIGIKPPKGILMYGPP 258
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARIN--EMFSIARRNAPAFVFVDEI 271
GTGKT+ AR +A E+G F +G E S+ +G + N + F A +N+P+ +F+DEI
Sbjct: 259 GTGKTIMARAVANETGAFFFLINGPEIM-SKMAGESESNLRKAFEEAEKNSPSIIFIDEI 317
Query: 272 DAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330
D+IA + + + R L+ +DG K R+ V+ I ATNRP+ +D
Sbjct: 318 DSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSN---------VVVIAATNRPNSIDPAL 368
Query: 331 VRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390
R GR DR + IG+PDA+ R++I +H+ +LA+DV+ E + T GF GADI +L +E
Sbjct: 369 RRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIASETHGFVGADIASLCSE 428
Query: 391 SGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGV 422
+ + +R+ I ++ + +D ++L +GV
Sbjct: 429 AAMQQIREKMDLIDLEE--ETIDTEVLNSLGV 458
Score = 316 (116.3 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 102/350 (29%), Positives = 167/350 (47%)
Query: 96 EVDLLQ-KRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
+VDL + H F+ IA L + IRE + L+ + + + N L +
Sbjct: 404 DVDLEAIASETHGFVGADIASLCSEAAMQQIREKMDLIDLEEETIDTEVLNSLG--VTQD 461
Query: 155 NFILPVGYVSDTKSMYKEVVLGGDV-WD----L------LDELMIY-MGNPMQYYERGVQ 202
NF +G S+ ++ + VV +V WD L L E + Y + +P QY + G+
Sbjct: 462 NFRFALGN-SNPSALRETVVENVNVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLA 520
Query: 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRN 261
+GVL GPPGTGKTL A+ +A E F+ G E + I ++F AR
Sbjct: 521 PTKGVLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 580
Query: 262 APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321
AP VF+DE+D+IA + ++ QL T +D + ++ V I ATN
Sbjct: 581 APTVVFLDELDSIAKARGGSHGDAGGASDRVVNQL-----LTEMDGMNAKKNVFVIGATN 635
Query: 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG 381
RPD++D +RPGR+D+ +Y+ LPD R+ I L ++ E+ T GFSG
Sbjct: 636 RPDQIDPALLRPGRLDQLIYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKITHGFSG 695
Query: 382 ADIRNLVNESGIMSVRKG-HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQ 430
AD+ +V S +++ ++++ I + +K E + + + E E++
Sbjct: 696 ADLSYIVQRSAKFAIKDSIEAQVKINKIKEEKEKVKTEDVDMKVDEVEEE 745
>FB|FBgn0028685 [details] [associations]
symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
activity" evidence=IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:1901838 "positive regulation of transcription of nuclear large
rRNA transcript from RNA polymerase I promoter" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
regulatory region sequence-specific DNA binding" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
Uniprot:Q8SZ19
Length = 397
Score = 343 (125.8 bits), Expect = 1.5e-30, P = 1.5e-30
Identities = 86/245 (35%), Positives = 134/245 (54%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + +L + + + + NP + G+ +G LL GPPGTGKTL AR +A + F+
Sbjct: 146 LTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 205
Query: 235 ASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATF 289
+ D +AR I EMF+ AR + P +F+DEIDAI GR + D + T
Sbjct: 206 VVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 265
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ Q+DG D SL Q V I ATNRPD LD +RPGR+DR++ I LP+ +
Sbjct: 266 MELLNQMDG------FD--SLGQ-VKMIMATNRPDSLDPALLRPGRLDRKIEIPLPNEQA 316
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R++I +H+ ++++E +V + F+GAD+RN+ E+G+ ++R + Q D +
Sbjct: 317 RLEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQGDFM 376
Query: 410 DVLDK 414
+ K
Sbjct: 377 KAVRK 381
>UNIPROTKB|O42586 [details] [associations]
symbol:psmc3-b "26S protease regulatory subunit 6A-B"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 EMBL:Y10460 UniGene:Xl.113 ProteinModelPortal:O42586
Xenbase:XB-GENE-1009853 Uniprot:O42586
Length = 404
Score = 343 (125.8 bits), Expect = 1.5e-30, P = 1.5e-30
Identities = 87/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 129 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 188
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + FS+A+ AP+ +
Sbjct: 189 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSII 248
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 249 FIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVK---------VIAATNR 299
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 300 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 359
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+GI+++R+G +++ +D ++ +L+ Q
Sbjct: 360 QCKAVCVEAGIIALRRGATELTHEDYMEGILEVQ 393
>POMBASE|SPBC4.07c [details] [associations]
symbol:rpt2 "19S proteasome regulatory subunit Rpt2"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IC] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IGI] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC4.07c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0007346
GO:GO:0043161 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0016887
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03062 OMA:FIRNQER EMBL:Z29366 PIR:S39348
RefSeq:NP_595480.1 ProteinModelPortal:P36612 IntAct:P36612
STRING:P36612 PRIDE:P36612 EnsemblFungi:SPBC4.07c.1 GeneID:2540939
KEGG:spo:SPBC4.07c OrthoDB:EOG4FN7S6 NextBio:20802054
Uniprot:P36612
Length = 448
Score = 343 (125.8 bits), Expect = 1.5e-30, P = 1.5e-30
Identities = 80/243 (32%), Positives = 134/243 (55%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L G PGTGKTL A+ +A ++ F+
Sbjct: 196 LESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 255
Query: 235 ASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALI 293
G+E R + ++F+ A ++P+ VF+DEIDAI + R D + A E
Sbjct: 256 VVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTK--RYDAQSGAEREIQR 313
Query: 294 AQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353
L+ + G D S R + I ATNR +LD +RPGRIDR++ PD + +I
Sbjct: 314 TMLELLNQLDGFDT-SQRDIKV-IMATNRISDLDPALIRPGRIDRKILFENPDEATKRKI 371
Query: 354 FDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413
F +H++ L EDVN EEL+ SGA+I+ +V+E+G++++R+ ++ D +
Sbjct: 372 FTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQARE 431
Query: 414 KQL 416
K L
Sbjct: 432 KVL 434
>ZFIN|ZDB-GENE-060312-22 [details] [associations]
symbol:zgc:136908 "zgc:136908" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 ZFIN:ZDB-GENE-060312-22
GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 HOGENOM:HOG000223224
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
GeneTree:ENSGT00700000104534 HOVERGEN:HBG001226 EMBL:CU571167
EMBL:BC114306 IPI:IPI00835697 RefSeq:NP_001035017.1
UniGene:Dr.47664 SMR:Q29RA2 STRING:Q29RA2
Ensembl:ENSDART00000100551 GeneID:563679 KEGG:dre:563679
InParanoid:Q29RA2 OrthoDB:EOG4WWRMB NextBio:20885016 Uniprot:Q29RA2
Length = 805
Score = 365 (133.5 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 86/238 (36%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 228 HPALFKAIGVKPPRGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIM-SKLAGESES 286
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 287 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 342
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
V+ + ATNRP+ +D R GR DR + IG+PD+ R++I +H+ +L+EDV+
Sbjct: 343 -----VVVMAATNRPNSVDAALRRFGRFDREIDIGIPDSTGRLEILQIHTKNMKLSEDVD 397
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK + I +D D +D LL + V + +
Sbjct: 398 LEQISAETHGHVGADLAALCSEAALQAIRKKMTLIDLED--DSIDADLLNSLAVTMDD 453
Score = 283 (104.7 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 79/231 (34%), Positives = 120/231 (51%)
Query: 175 LGG--DVWDLLDELMIYMGNPMQYYERGVQF----VRGVLLSGPPGTGKTLFARTLAKES 228
+GG +V L EL+ Y P++Y ++ ++F RGVL GPPG GKTL A+ +A E
Sbjct: 481 IGGLDEVKRELQELVQY---PVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANEC 537
Query: 229 GLPFVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRA 287
FV G E T A + ++F AR+ AP +F DE+D+IA
Sbjct: 538 QANFVSIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKARGGGAGDAGG 597
Query: 288 TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDA 347
+ +I Q+ T +D + ++ V I ATNRPD +D +RPGR+D+ +YI LPD
Sbjct: 598 AADRVINQI-----LTEMDGMTNKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDM 652
Query: 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398
R I + +A+DV+ L T GFSGAD+ + + +++R+
Sbjct: 653 PSRTAILRANLRKSPVAKDVDLMYLSKITEGFSGADLTEICQRACKLAIRE 703
>UNIPROTKB|P46472 [details] [associations]
symbol:psmc2 "26S protease regulatory subunit 7"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03061 CTD:5701 EMBL:X80157 EMBL:BC054143 PIR:S53709
RefSeq:NP_001084136.1 UniGene:Xl.57157 ProteinModelPortal:P46472
GeneID:399327 KEGG:xla:399327 Xenbase:XB-GENE-1000023
Uniprot:P46472
Length = 433
Score = 342 (125.4 bits), Expect = 1.9e-30, P = 1.9e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVNK 415
>WB|WBGene00008053 [details] [associations]
symbol:cdc-48.2 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
Length = 810
Score = 364 (133.2 bits), Expect = 2.2e-30, P = 2.2e-30
Identities = 86/235 (36%), Positives = 134/235 (57%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ SG +
Sbjct: 231 HPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKMSGESES 289
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309
N + F+ +N+PA +F+DEIDAIA +++ + +++QL T +D
Sbjct: 290 NLRKAFAECEKNSPAILFIDEIDAIA---PKREKAHGEVEKRIVSQL-----LTLMDGLK 341
Query: 310 LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF 369
R V+ I ATNRP+ +D R GR DR + IG+PDA R++I +H+ +L EDV+
Sbjct: 342 TRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDL 401
Query: 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424
E++ GF GAD+ +L +E+ I +R+ I +D D +D ++L + V +
Sbjct: 402 EQVANECHGFVGADLASLCSEAAIQQIREKMELIDLED--DTIDAEVLNSLAVTM 454
Score = 336 (123.3 bits), Expect = 3.0e-27, P = 3.0e-27
Identities = 105/328 (32%), Positives = 162/328 (49%)
Query: 94 GAEVDLLQ-KRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAY 152
G +VDL Q + H F+ +A L + IRE + L+ + + + N L
Sbjct: 396 GEDVDLEQVANECHGFVGADLASLCSEAAIQQIREKMELIDLEDDTIDAEVLNSL--AVT 453
Query: 153 AENFILPVGYVSDTKSMYKEVV---------LGG--DVWDLLDELMIY-MGNPMQYYERG 200
ENF +G S ++ + VV +GG +V L EL+ Y + +P +Y + G
Sbjct: 454 MENFRFAMGK-SSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFG 512
Query: 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF-TDSEKSGAARINEMFSIAR 259
+Q RGVL GPPG GKTL A+ +A E F+ G E T A + ++F AR
Sbjct: 513 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKAR 572
Query: 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319
AP +F DE+D+IA + +I Q+ T +D + ++ V I A
Sbjct: 573 AAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQV-----LTEMDGMNAKKNVFIIGA 627
Query: 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379
TNRPD +D +RPGR+D+ +YI LPD R+QIF L+ D++ L TVGF
Sbjct: 628 TNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGF 687
Query: 380 SGADIRNLVNESGIMSVRKG-HSKIQQQ 406
SGAD+ + + +++R+ +I+Q+
Sbjct: 688 SGADLTEICQRACKLAIRESIEREIRQE 715
>UNIPROTKB|P54812 [details] [associations]
symbol:cdc-48.2 "Transitional endoplasmic reticulum ATPase
homolog 2" species:6239 "Caenorhabditis elegans" [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
Length = 810
Score = 364 (133.2 bits), Expect = 2.2e-30, P = 2.2e-30
Identities = 86/235 (36%), Positives = 134/235 (57%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ SG +
Sbjct: 231 HPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKMSGESES 289
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309
N + F+ +N+PA +F+DEIDAIA +++ + +++QL T +D
Sbjct: 290 NLRKAFAECEKNSPAILFIDEIDAIA---PKREKAHGEVEKRIVSQL-----LTLMDGLK 341
Query: 310 LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF 369
R V+ I ATNRP+ +D R GR DR + IG+PDA R++I +H+ +L EDV+
Sbjct: 342 TRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDL 401
Query: 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424
E++ GF GAD+ +L +E+ I +R+ I +D D +D ++L + V +
Sbjct: 402 EQVANECHGFVGADLASLCSEAAIQQIREKMELIDLED--DTIDAEVLNSLAVTM 454
Score = 336 (123.3 bits), Expect = 3.0e-27, P = 3.0e-27
Identities = 105/328 (32%), Positives = 162/328 (49%)
Query: 94 GAEVDLLQ-KRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAY 152
G +VDL Q + H F+ +A L + IRE + L+ + + + N L
Sbjct: 396 GEDVDLEQVANECHGFVGADLASLCSEAAIQQIREKMELIDLEDDTIDAEVLNSL--AVT 453
Query: 153 AENFILPVGYVSDTKSMYKEVV---------LGG--DVWDLLDELMIY-MGNPMQYYERG 200
ENF +G S ++ + VV +GG +V L EL+ Y + +P +Y + G
Sbjct: 454 MENFRFAMGK-SSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFG 512
Query: 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF-TDSEKSGAARINEMFSIAR 259
+Q RGVL GPPG GKTL A+ +A E F+ G E T A + ++F AR
Sbjct: 513 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKAR 572
Query: 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319
AP +F DE+D+IA + +I Q+ T +D + ++ V I A
Sbjct: 573 AAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQV-----LTEMDGMNAKKNVFIIGA 627
Query: 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379
TNRPD +D +RPGR+D+ +YI LPD R+QIF L+ D++ L TVGF
Sbjct: 628 TNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGF 687
Query: 380 SGADIRNLVNESGIMSVRKG-HSKIQQQ 406
SGAD+ + + +++R+ +I+Q+
Sbjct: 688 SGADLTEICQRACKLAIRESIEREIRQE 715
>UNIPROTKB|E1C4V5 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
Length = 424
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 188 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 247
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 248 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 299
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 300 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 358
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 359 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 406
>UNIPROTKB|F1NFL8 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
Uniprot:F1NFL8
Length = 432
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 196 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 255
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 256 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 307
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 308 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 366
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 367 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 414
>UNIPROTKB|Q5E9F9 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
Uniprot:Q5E9F9
Length = 433
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>UNIPROTKB|F1PPH7 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
Uniprot:F1PPH7
Length = 433
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>UNIPROTKB|B7Z5E2 [details] [associations]
symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
Uniprot:B7Z5E2
Length = 296
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 60 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 119
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 120 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 171
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 172 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 230
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 231 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 278
>UNIPROTKB|P35998 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
Length = 433
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>UNIPROTKB|I3LJ30 [details] [associations]
symbol:I3LJ30 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
Ensembl:ENSSSCT00000030050 OMA:WDLAYEN Uniprot:I3LJ30
Length = 434
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 198 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 257
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 258 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 309
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 310 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 368
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 369 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 416
>UNIPROTKB|Q4R4R0 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9541 "Macaca fascicularis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q9WZ49
GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
EMBL:AB169834 ProteinModelPortal:Q4R4R0 SMR:Q4R4R0 PRIDE:Q4R4R0
Uniprot:Q4R4R0
Length = 433
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>MGI|MGI:109555 [details] [associations]
symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit,
ATPase 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IDA] [GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
MGI:MGI:109555 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
OrthoDB:EOG4RXZ05 ChiTaRS:PSMC2 EMBL:AK005083 EMBL:AK168548
EMBL:BC005462 EMBL:U61283 IPI:IPI00270326 PIR:S39349
UniGene:Mm.2462 ProteinModelPortal:P46471 SMR:P46471 IntAct:P46471
STRING:P46471 PhosphoSite:P46471 REPRODUCTION-2DPAGE:P46471
SWISS-2DPAGE:P46471 PaxDb:P46471 PRIDE:P46471 InParanoid:P46471
Bgee:P46471 Genevestigator:P46471 GermOnline:ENSMUSG00000028932
Uniprot:P46471
Length = 433
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>ZFIN|ZDB-GENE-040426-1327 [details] [associations]
symbol:psmc2 "proteasome (prosome, macropain) 26S
subunit, ATPase 2" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040426-1327 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03061 OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978
OrthoDB:EOG4RXZ05 HSSP:Q9LCZ4 EMBL:BX571796 EMBL:BC053187
IPI:IPI00491385 RefSeq:NP_957260.1 UniGene:Dr.75589 STRING:Q7T3B1
Ensembl:ENSDART00000019647 GeneID:393941 KEGG:dre:393941
InParanoid:Q7T3B1 NextBio:20814913 Uniprot:Q7T3B1
Length = 433
Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>ASPGD|ASPL0000069340 [details] [associations]
symbol:AN7254 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEP]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0051228
"mitotic spindle disassembly" evidence=IEA] [GO:0016320
"endoplasmic reticulum membrane fusion" evidence=IEA] [GO:0034727
"piecemeal microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0043332 "mating projection tip" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0034098 "Cdc48p-Npl4p-Ufd1p
AAA ATPase complex" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0006950 GO:GO:0015031 GO:GO:0007049 EMBL:BN001304 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AACD01000124 RefSeq:XP_680523.1
STRING:Q5AWS6 PRIDE:Q5AWS6 GeneID:2869922 KEGG:ani:AN7254.2
OrthoDB:EOG47H8Z3 Uniprot:Q5AWS6
Length = 823
Score = 363 (132.8 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 88/274 (32%), Positives = 150/274 (54%)
Query: 154 ENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
EN + VGY D K++ + +L++ + + +P + G++ RG+L+ GPP
Sbjct: 216 ENNLNEVGY-DDIGGCRKQMA---QIRELVE---LPLRHPQLFKSIGIKPPRGILMYGPP 268
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARIN--EMFSIARRNAPAFVFVDEI 271
GTGKTL AR +A E+G F +G E S+ +G + N + F A +N+PA +F+DEI
Sbjct: 269 GTGKTLMARAVANETGAFFFLINGPEIM-SKMAGESESNLRKAFEEAEKNSPAIIFIDEI 327
Query: 272 DAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330
D+IA + + + R L+ +DG K R+ V+ + ATNRP+ +D
Sbjct: 328 DSIAPKREKTNGEVERRVVSQLLTLMDGMKARSN---------VVVMAATNRPNSIDPAL 378
Query: 331 VRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390
R GR DR + IG+PD R++I +H+ +L EDV+ E + T G+ G+D+ +L +E
Sbjct: 379 RRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGYVGSDLASLCSE 438
Query: 391 SGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424
+ + +R+ I + D +D ++L+ +GV +
Sbjct: 439 AAMQQIREKMDLIDLDE--DTIDAEVLDSLGVTM 470
Score = 303 (111.7 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 96/321 (29%), Positives = 155/321 (48%)
Query: 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240
+L++ + + +P ++ + G+ RGVL GPPGTGKT+ A+ +A E F+ G E
Sbjct: 510 ELIESVQYPVDHPEKFQKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPEL 569
Query: 241 TDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299
+ I ++F AR AP VF+DE+D+IA + ++ QL
Sbjct: 570 LSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQL--- 626
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
T +D + ++ V I ATNRP++LD VRPGR+D +Y+ LPD R I
Sbjct: 627 --LTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRLDTLVYVPLPDQASREGILKAQLR 684
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS-KIQQQDIVDVLDKQLLE 418
+A DV+ E + +T GFSGAD+ + + +++++ S +I++Q KQ E
Sbjct: 685 KTPVASDVDIEFIASKTHGFSGADLGFVTQRAVKLAIKESISAEIERQ-------KQR-E 736
Query: 419 GMGVLLTEEEQQKCEQSVSFEKKRLL---AVHEAGHIVLAHLFPRFDWHAFSQLLPGGKE 475
G + E++++ E V E R A+ A V R++ AF+Q L
Sbjct: 737 AAGEDVKMEDEEEGEDPVP-ELTRAHFEEAMKTARRSVSDVEIRRYE--AFAQSLKNSGG 793
Query: 476 TAISVFYPREDTIDQGYTTFG 496
++ F + D G TFG
Sbjct: 794 SSFFRFPSANEAADSG-NTFG 813
>RGD|3428 [details] [associations]
symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase
2" species:10116 "Rattus norvegicus" [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA;ISO] [GO:0016887 "ATPase
activity" evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA;ISO;ISS] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03061
CTD:5701 OrthoDB:EOG4RXZ05 EMBL:D50694 EMBL:BC061542 EMBL:U13895
IPI:IPI00421600 RefSeq:NP_150239.1 UniGene:Rn.1202
ProteinModelPortal:Q63347 IntAct:Q63347 MINT:MINT-1794034
STRING:Q63347 PhosphoSite:Q63347 PRIDE:Q63347 GeneID:25581
KEGG:rno:25581 InParanoid:Q63347 NextBio:607227 Genevestigator:Q63347
GermOnline:ENSRNOG00000012026 Uniprot:Q63347
Length = 433
Score = 340 (124.7 bits), Expect = 3.1e-30, P = 3.1e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>UNIPROTKB|Q63347 [details] [associations]
symbol:Psmc2 "26S protease regulatory subunit 7"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03061 CTD:5701 OrthoDB:EOG4RXZ05
EMBL:D50694 EMBL:BC061542 EMBL:U13895 IPI:IPI00421600
RefSeq:NP_150239.1 UniGene:Rn.1202 ProteinModelPortal:Q63347
IntAct:Q63347 MINT:MINT-1794034 STRING:Q63347 PhosphoSite:Q63347
PRIDE:Q63347 GeneID:25581 KEGG:rno:25581 InParanoid:Q63347
NextBio:607227 Genevestigator:Q63347 GermOnline:ENSRNOG00000012026
Uniprot:Q63347
Length = 433
Score = 340 (124.7 bits), Expect = 3.1e-30, P = 3.1e-30
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>ZFIN|ZDB-GENE-030131-666 [details] [associations]
symbol:psmc3 "proteasome (prosome, macropain) 26S
subunit, ATPase, 3" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-666 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 EMBL:BX957297 IPI:IPI00817732 PRIDE:F1QJQ2
Ensembl:ENSDART00000133705 ArrayExpress:F1QJQ2 Bgee:F1QJQ2
Uniprot:F1QJQ2
Length = 427
Score = 340 (124.7 bits), Expect = 3.1e-30, P = 3.1e-30
Identities = 87/274 (31%), Positives = 148/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 152 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 211
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 212 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 271
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG F V I ATNR
Sbjct: 272 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG---------FQPNMQVKVIAATNR 322
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS + DVNFEEL T F+GA
Sbjct: 323 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVCPDVNFEELARCTDDFNGA 382
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 383 QCKAVCVEAGMIALRRGATELNHEDYMEGILEVQ 416
>UNIPROTKB|G4N517 [details] [associations]
symbol:MGG_05193 "Cell division control protein 48"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
Uniprot:G4N517
Length = 820
Score = 362 (132.5 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 88/274 (32%), Positives = 150/274 (54%)
Query: 154 ENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
EN + VGY D K++ + ++++ + + +P + G++ RGVLL GPP
Sbjct: 213 ENNLNEVGY-DDIGGCRKQMA---QIREMVE---LPLRHPQLFKSIGIKPPRGVLLYGPP 265
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARIN--EMFSIARRNAPAFVFVDEI 271
GTGKTL AR +A E+G F +G E S+ +G + N + F A +N+PA +F+DEI
Sbjct: 266 GTGKTLMARAVANETGAFFFLINGPEIM-SKMAGESESNLRKAFEEAEKNSPAIIFIDEI 324
Query: 272 DAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330
D+IA + + + R L+ +DG K R+ V+ + ATNRP+ +D
Sbjct: 325 DSIAPKREKTNGEVERRVVSQLLTLMDGMKARSN---------VVVMAATNRPNSIDPAL 375
Query: 331 VRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390
R GR DR + IG+PD R++I +H+ +L +DV+ E++ T G+ G+D+ L +E
Sbjct: 376 RRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSDVAALCSE 435
Query: 391 SGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424
+ + +R+ I + D +D ++L+ +GV +
Sbjct: 436 AAMQQIREKMDLIDLDE--DTIDAEVLDSLGVTM 467
Score = 299 (110.3 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 98/343 (28%), Positives = 163/343 (47%)
Query: 94 GAEVDLLQ-KRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAY 152
G +VDL Q + H ++ +A L + IRE + L+ + + + + L
Sbjct: 409 GDDVDLEQIAAETHGYVGSDVAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLG--VT 466
Query: 153 AENFILPVGYVSDTKSMYKEVV----------LGG--DV-WDLLDELMIYMGNPMQYYER 199
ENF +G VS+ ++ + V +GG +V DL +++ + +P ++ +
Sbjct: 467 MENFRFALG-VSNPSALREVAVVEVPNVRWEDIGGLDEVKQDLREQVQYPVDHPEKFLKF 525
Query: 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIA 258
G+ RGVL GPPGTGKT+ A+ +A E F+ G E + I ++F A
Sbjct: 526 GLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKA 585
Query: 259 RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318
R AP VF+DE+D+IA + ++ QL T +D + ++ V I
Sbjct: 586 RAAAPCIVFLDELDSIAKARGGSVGDAGGASDRVVNQL-----LTEMDGMTSKKNVFVIG 640
Query: 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378
ATNRP++LD RPGR+D +Y+ LPD R+ I +++DV+ + + +T G
Sbjct: 641 ATNRPEQLDPALCRPGRLDSLIYVPLPDELGRLSILKAQLRKTPVSDDVDLQYIANKTHG 700
Query: 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMG 421
FSGAD+ G ++ R I++ D+ + LE G
Sbjct: 701 FSGADL-------GFITQRAVKIAIKESITADINRTKALEAAG 736
>UNIPROTKB|F1P4V8 [details] [associations]
symbol:LOC426240 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
EMBL:AADN02060646 EMBL:AADN02060647 EMBL:AADN02060648
EMBL:AADN02060649 EMBL:AADN02060650 EMBL:AADN02060651
EMBL:AADN02060652 EMBL:AADN02060653 IPI:IPI00585183
Ensembl:ENSGALT00000003093 ArrayExpress:F1P4V8 Uniprot:F1P4V8
Length = 810
Score = 365 (133.5 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA-LIAQLDGDKERTGIDRF 308
N + F +NAPA +F+DE+DAIA P+ E +++QL T +D
Sbjct: 285 NLRKAFEETEKNAPAIIFIDELDAIASDDCFPSPQTHGEVERRIVSQL-----LTLMDGL 339
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
R VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 340 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 399
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 400 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 455
Score = 314 (115.6 bits), Expect = 8.4e-25, P = 8.4e-25
Identities = 83/237 (35%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 483 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 542
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 543 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 602
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 603 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 657
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+DV+ + L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 658 VAILKANLRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 714
Score = 40 (19.1 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 591 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 634
>ASPGD|ASPL0000036562 [details] [associations]
symbol:AN2904 species:162425 "Emericella nidulans"
[GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
OMA:EDAYSAQ Uniprot:C8VJ79
Length = 422
Score = 338 (124.0 bits), Expect = 5.2e-30, P = 5.2e-30
Identities = 101/309 (32%), Positives = 162/309 (52%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMA--YAENFILPVGYVSDTKSMYKEVVL 175
+ ILS + RE L +SS L++ N L D+ A++ I +G Y +V
Sbjct: 114 VRILSTLDREK---LKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADV-- 168
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVLL GPPGTGKT+ + +A + F
Sbjct: 169 GGLDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASF 228
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ +G+EF G + ++F +AR N+PA +F+DEIDAIA + R D + A E
Sbjct: 229 IRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATK--RFDAQTGADREV 286
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL-YIGLPDAKQR 350
L+ + G ++ S V I ATNR D LD +RPGR+DR++ + L D ++R
Sbjct: 287 QRILLELLNQMDGFEQTS---NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRER 343
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410
IF ++ L+ +V+ + L+ R SGA I ++ E+G+ +VRK I Q D+ D
Sbjct: 344 RLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNIIQSDLED 403
Query: 411 VLDKQLLEG 419
Q+ G
Sbjct: 404 AYSAQVKTG 412
>FB|FBgn0028687 [details] [associations]
symbol:Rpt1 "Regulatory particle triple-A ATPase 1"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
activity" evidence=IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE013599 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
KO:K03061 OMA:DIRWELI GeneTree:ENSGT00550000074978 HSSP:Q9LCZ4
EMBL:AF145307 EMBL:AY061606 RefSeq:NP_477473.1 UniGene:Dm.3425
SMR:Q7KMQ0 IntAct:Q7KMQ0 STRING:Q7KMQ0 EnsemblMetazoa:FBtr0088947
GeneID:35701 KEGG:dme:Dmel_CG1341 UCSC:CG1341-RA CTD:35701
FlyBase:FBgn0028687 HOGENOM:HOG000237377 InParanoid:Q7KMQ0
OrthoDB:EOG4X3FGQ GenomeRNAi:35701 NextBio:794815 Uniprot:Q7KMQ0
Length = 433
Score = 338 (124.0 bits), Expect = 5.2e-30, P = 5.2e-30
Identities = 80/228 (35%), Positives = 119/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ GLPD R IF +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ F+ L +GA+IR++ E+G+ ++R ++D ++ + K
Sbjct: 368 IRFDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKK 415
>FB|FBgn0028686 [details] [associations]
symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
Uniprot:Q9V405
Length = 413
Score = 338 (124.0 bits), Expect = 5.2e-30, P = 5.2e-30
Identities = 101/296 (34%), Positives = 152/296 (51%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGG 177
+ ILS I RE LL ++S L+K N L D+ E D K +GG
Sbjct: 108 VRILSTIDRE---LLKPSASVALHKHSNALVDVLPPEADSSISMLQPDEKPDVSYADIGG 164
Query: 178 DVWDLL-DELMIYMGNPMQYYER----GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
D+ E+ + P+ ++E G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 165 --MDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASF 222
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 223 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 280
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ + V I ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 281 QRILLELLNQMDGFDQTT---NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 337
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+F ++ L+EDV+ EE V R SGADI + E+G+ +VR+ + +D
Sbjct: 338 LVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMHAVRENRYIVLAKD 393
>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
symbol:PFD0665c "26s proteasome aaa-ATPase
subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
Uniprot:Q8I1V1
Length = 392
Score = 338 (124.0 bits), Expect = 5.2e-30, P = 5.2e-30
Identities = 79/215 (36%), Positives = 119/215 (55%)
Query: 195 QYYER-GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARIN 252
+ YE+ G++ G+L+ GPPGTGKT+ + +A E+ + F+ G+EF G +
Sbjct: 162 ELYEKIGIEPPMGILIYGPPGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVR 221
Query: 253 EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312
++F +AR N+P+ +F+DE+DAIA + R D + A E L+ + G D+ S
Sbjct: 222 DVFRLARENSPSIIFIDEVDAIATK--RFDAQTGADREVQRILLELLNQMDGFDK-STNV 278
Query: 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEEL 372
VI ATNR D LD +RPGR+DR++ LPD KQ+ IF + ++ DVN E
Sbjct: 279 KVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESF 336
Query: 373 VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
V RT S ADI + E+G+ ++RK I D
Sbjct: 337 VVRTDKISAADIAAIAQEAGMQAIRKNRYIITAND 371
>UNIPROTKB|Q8I1V1 [details] [associations]
symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
Length = 392
Score = 338 (124.0 bits), Expect = 5.2e-30, P = 5.2e-30
Identities = 79/215 (36%), Positives = 119/215 (55%)
Query: 195 QYYER-GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARIN 252
+ YE+ G++ G+L+ GPPGTGKT+ + +A E+ + F+ G+EF G +
Sbjct: 162 ELYEKIGIEPPMGILIYGPPGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVR 221
Query: 253 EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312
++F +AR N+P+ +F+DE+DAIA + R D + A E L+ + G D+ S
Sbjct: 222 DVFRLARENSPSIIFIDEVDAIATK--RFDAQTGADREVQRILLELLNQMDGFDK-STNV 278
Query: 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEEL 372
VI ATNR D LD +RPGR+DR++ LPD KQ+ IF + ++ DVN E
Sbjct: 279 KVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESF 336
Query: 373 VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
V RT S ADI + E+G+ ++RK I D
Sbjct: 337 VVRTDKISAADIAAIAQEAGMQAIRKNRYIITAND 371
>ZFIN|ZDB-GENE-030131-5083 [details] [associations]
symbol:psmc4 "proteasome (prosome, macropain) 26S
subunit, ATPase, 4" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005937
Pfam:PF00004 SMART:SM00382 ZFIN:ZDB-GENE-030131-5083 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 EMBL:BC055215 IPI:IPI00509630
UniGene:Dr.76514 ProteinModelPortal:Q7SXX0 SMR:Q7SXX0 STRING:Q7SXX0
PRIDE:Q7SXX0 InParanoid:Q7SXX0 ArrayExpress:Q7SXX0 Bgee:Q7SXX0
Uniprot:Q7SXX0
Length = 418
Score = 338 (124.0 bits), Expect = 5.2e-30, P = 5.2e-30
Identities = 98/296 (33%), Positives = 159/296 (53%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKS--MYKEVVL 175
+ ILS I RE LL +S L+K N L D+ E + SD K +Y ++
Sbjct: 113 VRILSTIDRE---LLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVLYSDI-- 167
Query: 176 GG-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
GG D+ ++ + + + + + Y + G+ RGVL+ GPPG GKT+ A+ +A + F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 233 VFASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G+EF G + ++F +A+ NAPA +F+DEIDAIA + R D + A E
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATK--RFDAQTGADREV 285
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
L+ + G D+ ++ VI ATNR D LD + PGR+DR++ LPD +Q+
Sbjct: 286 QRILLELLNQMDGFDQ-NVNVKVIM--ATNRADTLDPALLCPGRLDRKIEFPLPDRRQKR 342
Query: 352 QIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+F ++ L+E+V+ E+ V R SGADI ++ E+G+++VR+ + +D
Sbjct: 343 LVFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQEAGMLAVRENRYIVLAKD 398
>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
symbol:vcp "valosin containing protein"
species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
break" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:2000058 "regulation of protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
Length = 806
Score = 362 (132.5 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 307 (113.1 bits), Expect = 4.9e-24, P = 4.9e-24
Identities = 80/237 (33%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
+ I + +++DV+ + L T GFSGAD+ + + +++R+ ++I+++
Sbjct: 654 IAILKANLRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRE 710
Score = 42 (19.8 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G +V DGG I +I EM + + G T R ++D
Sbjct: 587 GGNVGDGGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIID 630
>TAIR|locus:2161258 [details] [associations]
symbol:RPT3 "regulatory particle triple-A ATPase 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
"ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
stimulus" evidence=RCA] [GO:0009853 "photorespiration"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
GermOnline:AT5G58290 Uniprot:Q9SEI4
Length = 408
Score = 337 (123.7 bits), Expect = 6.7e-30, P = 6.7e-30
Identities = 95/295 (32%), Positives = 157/295 (53%)
Query: 119 ILILSLIRETVMLLHITSSRLLYKKYNQLFDMA--YAENFILPVGYVSDTKSMYKEVVLG 176
+ ILS I LL ++S L++ N L D+ A++ I + Y ++ G
Sbjct: 103 VRILSTINRE--LLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDI--G 158
Query: 177 G-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233
G D+ ++ + + + + + Y + G+ RGVLL GPPGTGKT+ A+ +A + F+
Sbjct: 159 GCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218
Query: 234 FASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292
G+EF G + ++F +A+ NAPA +F+DE+DAIA AR D + A E
Sbjct: 219 RVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIAT--ARFDAQTGADREVQ 276
Query: 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352
++ + G D+ ++ VI ATNR D LD +RPGR+DR++ LPD +Q+
Sbjct: 277 RILMELLNQMDGFDQ-TVNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 333
Query: 353 IFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+F V ++ L+++V+ E+ V R S A+I + E+G+ +VRK I +D
Sbjct: 334 VFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKD 388
>WB|WBGene00007352 [details] [associations]
symbol:cdc-48.1 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040002
"collagen and cuticulin-based cuticle development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0002119
GO:GO:0040011 GO:GO:0040018 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 GO:GO:0040002
HOGENOM:HOG000223224 KO:K13525 OMA:QIANECH InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0034098 GeneTree:ENSGT00700000104534
GO:GO:0071712 EMBL:Z49886 PIR:T18970 RefSeq:NP_496273.1
ProteinModelPortal:P54811 SMR:P54811 DIP:DIP-26650N IntAct:P54811
MINT:MINT-1061999 STRING:P54811 PaxDb:P54811 PRIDE:P54811
EnsemblMetazoa:C06A1.1.1 EnsemblMetazoa:C06A1.1.2 GeneID:174624
KEGG:cel:CELE_C06A1.1 UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1
InParanoid:P54811 NextBio:884814 Uniprot:P54811
Length = 809
Score = 359 (131.4 bits), Expect = 8.1e-30, P = 8.1e-30
Identities = 106/328 (32%), Positives = 164/328 (50%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + G++ RG+LL GPPGTGKTL AR +A E+G F +G E S+ SG +
Sbjct: 232 HPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVM-SKMSGESES 290
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F +N PA +F+DEIDAIA + + + R L+ +DG K R+ +
Sbjct: 291 NLRKAFEECEKNQPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNL--- 347
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
+ I ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 348 ------VVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVD 401
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEE 428
E++ GF GAD+ +L +E+ + +R+ I +D D +D ++L + V + E
Sbjct: 402 LEQIANECHGFVGADLASLCSEAALQQIREKMELIDLED--DQIDAEVLNSLAVTM---E 456
Query: 429 QQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTI 488
+ Q S A+ EA +V P W L +E V YP E
Sbjct: 457 NFRFAQGKSSPS----ALREA--VVET---PNTTWSDIGGLQNVKRELQELVQYPVEHP- 506
Query: 489 DQGYTTFGYLKMQMVVAHGGR-CAERLV 515
+ Y FG + V+ +G C + L+
Sbjct: 507 -EKYLKFGMQPSRGVLFYGPPGCGKTLL 533
Score = 319 (117.4 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 104/322 (32%), Positives = 157/322 (48%)
Query: 96 EVDLLQ-KRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
+VDL Q + H F+ +A L L IRE + L+ + ++ + N L E
Sbjct: 399 DVDLEQIANECHGFVGADLASLCSEAALQQIREKMELIDLEDDQIDAEVLNSL--AVTME 456
Query: 155 NFILPVGYVSDTKSMYKEVV---------LGG--DVWDLLDELMIY-MGNPMQYYERGVQ 202
NF G S ++ + VV +GG +V L EL+ Y + +P +Y + G+Q
Sbjct: 457 NFRFAQGK-SSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQ 515
Query: 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF-TDSEKSGAARINEMFSIARRN 261
RGVL GPPG GKTL A+ +A E F+ G E T A + ++F AR
Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAA 575
Query: 262 APAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320
AP +F DE+D+IA R + +I Q+ T +D + ++ V I AT
Sbjct: 576 APCVLFFDELDSIAKARGGGAGGDGGGASDRVINQV-----LTEMDGMNAKKNVFIIGAT 630
Query: 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFS 380
NRPD +D +RPGR+D+ +YI LPD R QI L++D++ L TVGFS
Sbjct: 631 NRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFS 690
Query: 381 GADIRNLVNESGIMSVRKGHSK 402
GAD+ + + +++R+ K
Sbjct: 691 GADLTEICQRACKLAIRESIEK 712
>UNIPROTKB|P54811 [details] [associations]
symbol:cdc-48.1 "Transitional endoplasmic reticulum ATPase
homolog 1" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0007126 GO:GO:0002119 GO:GO:0040011 GO:GO:0040018
GO:GO:0016887 GO:GO:0000910 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0030968 GO:GO:0040002 HOGENOM:HOG000223224 KO:K13525
OMA:QIANECH InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z49886 PIR:T18970
RefSeq:NP_496273.1 ProteinModelPortal:P54811 SMR:P54811
DIP:DIP-26650N IntAct:P54811 MINT:MINT-1061999 STRING:P54811
PaxDb:P54811 PRIDE:P54811 EnsemblMetazoa:C06A1.1.1
EnsemblMetazoa:C06A1.1.2 GeneID:174624 KEGG:cel:CELE_C06A1.1
UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1 InParanoid:P54811
NextBio:884814 Uniprot:P54811
Length = 809
Score = 359 (131.4 bits), Expect = 8.1e-30, P = 8.1e-30
Identities = 106/328 (32%), Positives = 164/328 (50%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + G++ RG+LL GPPGTGKTL AR +A E+G F +G E S+ SG +
Sbjct: 232 HPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVM-SKMSGESES 290
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F +N PA +F+DEIDAIA + + + R L+ +DG K R+ +
Sbjct: 291 NLRKAFEECEKNQPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNL--- 347
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
+ I ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 348 ------VVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVD 401
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEE 428
E++ GF GAD+ +L +E+ + +R+ I +D D +D ++L + V + E
Sbjct: 402 LEQIANECHGFVGADLASLCSEAALQQIREKMELIDLED--DQIDAEVLNSLAVTM---E 456
Query: 429 QQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTI 488
+ Q S A+ EA +V P W L +E V YP E
Sbjct: 457 NFRFAQGKSSPS----ALREA--VVET---PNTTWSDIGGLQNVKRELQELVQYPVEHP- 506
Query: 489 DQGYTTFGYLKMQMVVAHGGR-CAERLV 515
+ Y FG + V+ +G C + L+
Sbjct: 507 -EKYLKFGMQPSRGVLFYGPPGCGKTLL 533
Score = 319 (117.4 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 104/322 (32%), Positives = 157/322 (48%)
Query: 96 EVDLLQ-KRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
+VDL Q + H F+ +A L L IRE + L+ + ++ + N L E
Sbjct: 399 DVDLEQIANECHGFVGADLASLCSEAALQQIREKMELIDLEDDQIDAEVLNSL--AVTME 456
Query: 155 NFILPVGYVSDTKSMYKEVV---------LGG--DVWDLLDELMIY-MGNPMQYYERGVQ 202
NF G S ++ + VV +GG +V L EL+ Y + +P +Y + G+Q
Sbjct: 457 NFRFAQGK-SSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQ 515
Query: 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF-TDSEKSGAARINEMFSIARRN 261
RGVL GPPG GKTL A+ +A E F+ G E T A + ++F AR
Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAA 575
Query: 262 APAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320
AP +F DE+D+IA R + +I Q+ T +D + ++ V I AT
Sbjct: 576 APCVLFFDELDSIAKARGGGAGGDGGGASDRVINQV-----LTEMDGMNAKKNVFIIGAT 630
Query: 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFS 380
NRPD +D +RPGR+D+ +YI LPD R QI L++D++ L TVGFS
Sbjct: 631 NRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFS 690
Query: 381 GADIRNLVNESGIMSVRKGHSK 402
GAD+ + + +++R+ K
Sbjct: 691 GADLTEICQRACKLAIRESIEK 712
>POMBASE|SPAC1565.08 [details] [associations]
symbol:cdc48 "AAA family ATPase Cdc48" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005789
"endoplasmic reticulum membrane" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IGI] [GO:0006906 "vesicle fusion"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISM]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISS] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IGI] [GO:0033554 "cellular response to
stress" evidence=IGI] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase
complex" evidence=ISO] [GO:0051230 "spindle disassembly"
evidence=TAS] [GO:0061166 "establishment of endoplasmic reticulum
localization involved in endoplasmic reticulum polarization at cell
division site" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 PomBase:SPAC1565.08 Pfam:PF02359
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0033554 GO:GO:0016887 GO:GO:0000790 GO:GO:0030433
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0006906 GO:GO:0033047 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0061166
OrthoDB:EOG47H8Z3 RefSeq:NP_593287.2 ProteinModelPortal:Q9P3A7
SMR:Q9P3A7 IntAct:Q9P3A7 STRING:Q9P3A7 PRIDE:Q9P3A7
EnsemblFungi:SPAC1565.08.1 GeneID:2542744 KEGG:spo:SPAC1565.08
OMA:IVTIHPC NextBio:20803789 GO:GO:0034098 GO:GO:0030970
GO:GO:0051230 Uniprot:Q9P3A7
Length = 815
Score = 359 (131.4 bits), Expect = 8.2e-30, P = 8.2e-30
Identities = 79/236 (33%), Positives = 135/236 (57%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + G++ RG+L+ GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 246 HPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIM-SKMAGESES 304
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +N+PA +F+DEID+IA + + + R L+ +DG K R+
Sbjct: 305 NLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSN---- 360
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
V+ + ATNRP+ +D R GR DR + +G+PD R++I +H+ +LA+DV+
Sbjct: 361 -----VVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVD 415
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424
E++ T G+ G+D+ +L +E+ + +R+ I + D +D ++L+ +GV +
Sbjct: 416 LEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDE--DEIDAEVLDSLGVTM 469
Score = 292 (107.8 bits), Expect = 2.3e-22, P = 2.3e-22
Identities = 93/318 (29%), Positives = 154/318 (48%)
Query: 96 EVDLLQ-KRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAE 154
+VDL Q + H ++ +A L + IRE + ++ + + + + L +
Sbjct: 413 DVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLG--VTMD 470
Query: 155 NFILPVGYVSDTKSMYKEVVLG---------GDVWDLLDELMIYMGNPMQYYERGVQF-- 203
NF +G S S +E V+ G + ++ EL + P+ Y E+ ++F
Sbjct: 471 NFRFALG--SSNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGV 528
Query: 204 --VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARR 260
+GVL GPPGTGKTL A+ +A E F+ G E + + ++F AR
Sbjct: 529 TPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARA 588
Query: 261 NAPAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319
AP VF+DE+D+IA R A + ++ QL T +D + ++ V I A
Sbjct: 589 AAPCVVFLDELDSIAKARGASAGDSGGG--DRVVNQL-----LTEMDGVNSKKNVFVIGA 641
Query: 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379
TNRPD++D +RPGR+D+ +Y+ LPD + R I +AEDV+ + T GF
Sbjct: 642 TNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGF 701
Query: 380 SGADIRNLVNESGIMSVR 397
SGAD+ +V + ++++
Sbjct: 702 SGADLEFVVQRAVKLAIK 719
>UNIPROTKB|F1NDQ1 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
Length = 385
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 110 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 169
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 170 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 229
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 230 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 280
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 281 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 340
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 341 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 374
>UNIPROTKB|F1P3L9 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
Length = 389
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 114 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 173
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 174 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 233
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 234 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 284
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 285 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 344
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 345 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 378
>UNIPROTKB|F1PBK7 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
Length = 439
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 164 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 223
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 224 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 283
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 284 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 334
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 335 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 394
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 395 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 428
>UNIPROTKB|E9PM69 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
Bgee:E9PM69 Uniprot:E9PM69
Length = 397
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 122 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 181
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 182 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 241
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 242 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 292
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 293 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 352
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 353 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 386
>UNIPROTKB|P17980 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
"blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=TAS] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
Length = 439
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 164 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 223
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 224 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 283
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 284 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 334
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 335 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 394
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 395 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 428
>UNIPROTKB|F1SID4 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
Length = 446
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 171 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 230
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 231 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 290
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 291 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 341
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 342 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 401
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 402 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 435
>MGI|MGI:1098754 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
NextBio:295874 Bgee:O88685 Genevestigator:O88685
GermOnline:ENSMUSG00000002102 Uniprot:O88685
Length = 442
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 167 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 226
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 227 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 286
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 287 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 337
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 338 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 397
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 398 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 431
>POMBASE|SPAC3A11.12c [details] [associations]
symbol:rpt5 "19S proteasome regulatory subunit Rpt5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPAC3A11.12c GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 GO:GO:0008540
OMA:GALMYGP EMBL:AB012136 PIR:T11634 RefSeq:XP_001713083.1
ProteinModelPortal:O14126 STRING:O14126 PRIDE:O14126
EnsemblFungi:SPAC3A11.12c.1 GeneID:3361462 KEGG:spo:SPAC3A11.12c
OrthoDB:EOG40VZZ2 NextBio:20811506 Uniprot:O14126
Length = 438
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 82/248 (33%), Positives = 139/248 (56%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + +L + +++ M ++ + GV+ +G L+ GPPGTGKTL AR A +S F+
Sbjct: 190 LSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLK 249
Query: 235 ASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARK--DPRRRATF 289
+ + GA + + F++A+ +PA +F+DE+DAI + + K D + T
Sbjct: 250 LAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTM 309
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG FS V I ATNR D LD +R GR+DR+L LP+ +
Sbjct: 310 LELLNQLDG---------FSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEA 360
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
RV I +HS + +D+N+EEL T ++GA ++++ E+G++++R+G +KI + +
Sbjct: 361 RVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFM 420
Query: 410 D-VLDKQL 416
D +L+ Q+
Sbjct: 421 DGILEVQM 428
>RGD|61905 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0001824 "blastocyst development"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
Length = 439
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 164 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 223
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 224 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 283
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 284 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 334
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 335 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 394
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 395 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 428
>UNIPROTKB|Q6P6U2 [details] [associations]
symbol:Psmc3 "26S protease regulatory subunit 6A"
species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
Genevestigator:Q6P6U2 Uniprot:Q6P6U2
Length = 442
Score = 336 (123.3 bits), Expect = 8.6e-30, P = 8.6e-30
Identities = 85/274 (31%), Positives = 150/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 167 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 226
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 227 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 286
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DAI + + K D + T L+ QLDG + T + I ATNR
Sbjct: 287 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 337
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+DR++ +P+ + R +I +HS ++ DVN+EEL T F+GA
Sbjct: 338 VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGA 397
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 398 QCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 431
>UNIPROTKB|G3X757 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
Length = 806
Score = 362 (132.5 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 317 (116.6 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 84/237 (35%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+DV+ E L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Score = 40 (19.1 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
>UNIPROTKB|Q3ZBT1 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
Length = 806
Score = 362 (132.5 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 317 (116.6 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 84/237 (35%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+DV+ E L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Score = 40 (19.1 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
>UNIPROTKB|P55072 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISS] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISS]
[GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
protein catabolic process" evidence=IMP;TAS] [GO:0030968
"endoplasmic reticulum unfolded protein response" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
apoptotic process" evidence=TAS] [GO:0045184 "establishment of
protein localization" evidence=TAS] [GO:0019985 "translesion
synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IMP] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
"positive regulation of protein catabolic process" evidence=IDA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
Length = 806
Score = 362 (132.5 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 317 (116.6 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 84/237 (35%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+DV+ E L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Score = 40 (19.1 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
>MGI|MGI:99919 [details] [associations]
symbol:Vcp "valosin containing protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
"receptor binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
"cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IGI]
[GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISO] [GO:0031334 "positive regulation of protein complex
assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
evidence=ISO;IDA] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032436 "positive regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
"identical protein binding" evidence=ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
binding" evidence=ISO] [GO:0045732 "positive regulation of protein
catabolic process" evidence=ISO] [GO:0051260 "protein
homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
Length = 806
Score = 362 (132.5 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 317 (116.6 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 84/237 (35%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+DV+ E L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Score = 40 (19.1 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
>RGD|621595 [details] [associations]
symbol:Vcp "valosin-containing protein" species:10116 "Rattus
norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
[GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
[GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0018279 "protein N-linked glycosylation via asparagine"
evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
regulation of protein complex assembly" evidence=IEA;ISO]
[GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
"protein complex binding" evidence=IPI] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
"positive regulation of protein catabolic process" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
"aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
Uniprot:P46462
Length = 806
Score = 362 (132.5 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 317 (116.6 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 84/237 (35%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+DV+ E L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Score = 40 (19.1 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
>UNIPROTKB|P03974 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9823 "Sus scrofa" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 eggNOG:COG0464
GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:M30143 PIR:A26360
RefSeq:NP_999445.1 UniGene:Ssc.856 ProteinModelPortal:P03974
SMR:P03974 STRING:P03974 GeneID:397524 KEGG:ssc:397524
Uniprot:P03974
Length = 806
Score = 362 (132.5 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 314 (115.6 bits), Expect = 8.3e-25, P = 8.3e-25
Identities = 83/237 (35%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L +L+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+DV+ E L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Score = 40 (19.1 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
>UNIPROTKB|F1SIH8 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
EMBL:FP102396 Ensembl:ENSSSCT00000005837 ArrayExpress:F1SIH8
Uniprot:F1SIH8
Length = 808
Score = 362 (132.5 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 306 (112.8 bits), Expect = 6.4e-24, P = 6.4e-24
Identities = 84/239 (35%), Positives = 128/239 (53%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAE--DVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+ DV+ E L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 654 VAILKANLRKSPVAKAGDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 712
Score = 40 (19.1 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
>FB|FBgn0034792 [details] [associations]
symbol:CG3499 species:7227 "Drosophila melanogaster"
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
EMBL:AE013599 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111
TIGRFAMs:TIGR01241 HSSP:Q9LCZ4 GeneTree:ENSGT00550000074836
KO:K08955 EMBL:AY051480 RefSeq:NP_726263.1 UniGene:Dm.4589
SMR:Q9W1Y0 IntAct:Q9W1Y0 MINT:MINT-924656
EnsemblMetazoa:FBtr0071906 GeneID:37636 KEGG:dme:Dmel_CG3499
UCSC:CG3499-RB FlyBase:FBgn0034792 InParanoid:Q9W1Y0
OrthoDB:EOG4Z613M GenomeRNAi:37636 NextBio:804672 Uniprot:Q9W1Y0
Length = 736
Score = 357 (130.7 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 78/238 (32%), Positives = 131/238 (55%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ +P ++ G + +GVLL GPPGTGKTL AR +A E+ +PF A+G EF +
Sbjct: 312 LKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDE 371
Query: 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGD 299
GA R+ ++F A+ AP +F+DEID++ + P T L++++DG
Sbjct: 372 VLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYANQTINQLLSEMDGF 431
Query: 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359
+ G VI + ATNR D+LD +RPGR D + + PD R +I ++
Sbjct: 432 HQNAG---------VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLYLT 482
Query: 360 GKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLL 417
K L ++++ + L T GF+GAD+ N++N++ + + G + + + DK L+
Sbjct: 483 -KILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLM 539
Score = 264 (98.0 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 75/258 (29%), Positives = 122/258 (47%)
Query: 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA 364
+D F VI + ATNR D+LD +RPGR D + + PD R +I ++ K L
Sbjct: 428 MDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLYLT-KILH 486
Query: 365 EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424
++++ + L T GF+GAD+ N++N++ + + G + + + DK VL+
Sbjct: 487 DEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDK-------VLM 539
Query: 425 TEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQ--LLPGGKETAISVFY 482
E + + E + A HE GH ++A F + H + ++P G + +
Sbjct: 540 GPERKARLPDE---EANTITAYHEGGHAIVA--FYTKESHPLHKVTIMPRGPSLGHTAYI 594
Query: 483 PREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREMVIS 541
P ++ + T L M GGR AE LVFG D +T G DL++ T IA MV
Sbjct: 595 PEKERY---HVTKAQLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVRD 651
Query: 542 -PQNARLGLAGLTRRVGL 558
+ ++GL + GL
Sbjct: 652 WGMSDKVGLRTIEASKGL 669
>CGD|CAL0005689 [details] [associations]
symbol:RPT1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0045899 "positive regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 CGD:CAL0005689 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000078 EMBL:AACQ01000077
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
RefSeq:XP_715876.1 RefSeq:XP_715926.1 ProteinModelPortal:Q5A2A0
STRING:Q5A2A0 GeneID:3642412 GeneID:3642461 KEGG:cal:CaO19.441
KEGG:cal:CaO19.8071 Uniprot:Q5A2A0
Length = 444
Score = 335 (123.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 82/234 (35%), Positives = 127/234 (54%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ + G+ +G+LL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 208 SPERFVKLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARM 267
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DE+DAI G A D + T LI QLDG R I
Sbjct: 268 VRELFEMARTKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 327
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
V+F ATNRP+ LD +RPGRIDR++ LPD + R IF +HS + +D
Sbjct: 328 -------VMF--ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKTMSVEKD 378
Query: 367 VNFEELVFRTV-GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419
+ +E L+ R +GA++R++ E+G+ ++R ++D + +DK +++G
Sbjct: 379 IRWE-LISRLCPNATGAELRSVCTEAGMFAIRARRKVANEKDFLKAVDK-VIKG 430
>UNIPROTKB|Q5R8D7 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9601 "Pongo abelii" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03061 CTD:5701 EMBL:CR859816 RefSeq:NP_001126144.1
UniGene:Pab.13078 ProteinModelPortal:Q5R8D7 PRIDE:Q5R8D7
GeneID:100173102 KEGG:pon:100173102 InParanoid:Q5R8D7
Uniprot:Q5R8D7
Length = 433
Score = 335 (123.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 79/228 (34%), Positives = 119/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 197 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 256
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 257 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 308
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R I +H+ + D
Sbjct: 309 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERD 367
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 368 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 415
>UNIPROTKB|E2RLQ9 [details] [associations]
symbol:VCP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0045732 "positive regulation of protein catabolic process"
evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
NextBio:20856352 Uniprot:E2RLQ9
Length = 822
Score = 362 (132.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 85/238 (35%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 242 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 300
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 301 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 356
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 357 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 411
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 412 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 467
Score = 317 (116.6 bits), Expect = 4.0e-25, P = 4.0e-25
Identities = 84/237 (35%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 495 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 554
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 555 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 614
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 615 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 669
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
V I + +A+DV+ E L T GFSGAD+ + + +++R+ S+I+++
Sbjct: 670 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 726
Score = 40 (19.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 603 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 646
>ASPGD|ASPL0000010049 [details] [associations]
symbol:AN4236 species:162425 "Emericella nidulans"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001302 GO:GO:0030163
GO:GO:0017111 EMBL:AACD01000068 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP OrthoDB:EOG40VZZ2
RefSeq:XP_661840.1 ProteinModelPortal:Q5B5E4 STRING:Q5B5E4
EnsemblFungi:CADANIAT00004422 GeneID:2873654 KEGG:ani:AN4236.2
Uniprot:Q5B5E4
Length = 465
Score = 340 (124.7 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 81/256 (31%), Positives = 137/256 (53%)
Query: 165 DTKSMYKEVVLGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFA 221
D K K +GG + ++++ ++ M ++ + G++ +G L+ GPPGTGKTL A
Sbjct: 203 DEKPTEKYTDIGGLDKQIEEIVEAIVWPMKEAERFKKLGIKAPKGALMYGPPGTGKTLLA 262
Query: 222 RTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH-- 278
R A E+ F+ +G + GA + + F++A+ AP+ +F+DE+DA+ +
Sbjct: 263 RACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFIDELDAVGTKRFD 322
Query: 279 ARKDPRRRA--TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336
+ K R T L+ QLDG F+ + + ATNR D LD +R GR+
Sbjct: 323 SEKSGDREVQRTMLELLNQLDG---------FASDDRIKVLAATNRVDVLDPALLRSGRL 373
Query: 337 DRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396
DR++ LP+ + R I +HS + + VN+ EL T F GA ++ + E+G++++
Sbjct: 374 DRKIEFPLPNEEARANILQIHSRKMTVEDSVNWAELARSTDEFGGAQLKAVCVEAGMIAL 433
Query: 397 RKGHSKIQQQDIVDVL 412
RKGHSKI ++ VD +
Sbjct: 434 RKGHSKIGHENYVDAI 449
>SGD|S000002165 [details] [associations]
symbol:RPT2 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
evidence=IDA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IMP] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IDA] [GO:0045732 "positive regulation of
protein catabolic process" evidence=IDA] [GO:0043171 "peptide
catabolic process" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000002165 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006938 GO:GO:0016887 GO:GO:0043171 GO:GO:0006511
GO:GO:0045732 EMBL:Z48432 GO:GO:0070682 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T
PDBsum:4B4T KO:K03062 OMA:FIRNQER GeneTree:ENSGT00550000074818
OrthoDB:EOG4FN7S6 EMBL:X81070 EMBL:L17040 EMBL:Z74055 PIR:S46613
RefSeq:NP_010277.1 ProteinModelPortal:P40327 SMR:P40327
DIP:DIP-6282N IntAct:P40327 MINT:MINT-632695 STRING:P40327
PaxDb:P40327 PeptideAtlas:P40327 PRIDE:P40327 EnsemblFungi:YDL007W
GeneID:851557 KEGG:sce:YDL007W NextBio:968983 Genevestigator:P40327
GermOnline:YDL007W Uniprot:P40327
Length = 437
Score = 333 (122.3 bits), Expect = 1.8e-29, P = 1.8e-29
Identities = 83/250 (33%), Positives = 136/250 (54%)
Query: 164 SDTKSMYKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFAR 222
S T+S Y ++ L + ++ + + + + +P Y E G++ +GV+L G PGTGKTL A+
Sbjct: 176 SPTES-YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAK 234
Query: 223 TLAKESGLPFVFASGAEFTDSEKSGAARI-NEMFSIARRNAPAFVFVDEIDAIAGRH--A 279
+A ++ F+ G+E R+ ++F +A NAP+ VF+DEIDAI + +
Sbjct: 235 AVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDS 294
Query: 280 RKDPRR--RATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337
R + T L+ QLDG F R V I ATN+ + LD +RPGRID
Sbjct: 295 NSGGEREIQRTMLELLNQLDG---------FDDRGDVKVIMATNKIETLDPALIRPGRID 345
Query: 338 RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397
R++ PD + +I +H++ L+EDVN E LV SGADI+ + E+G++++R
Sbjct: 346 RKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR 405
Query: 398 KGHSKIQQQD 407
+ ++ +D
Sbjct: 406 ERRMQVTAED 415
>SGD|S000005643 [details] [associations]
symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
Uniprot:P33297
Length = 434
Score = 333 (122.3 bits), Expect = 1.8e-29, P = 1.8e-29
Identities = 78/247 (31%), Positives = 132/247 (53%)
Query: 170 YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228
Y +V L + +L++ +++ M ++ + G++ +G L+ GPPGTGKTL AR A ++
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 229 GLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR 285
F+ + + GA + + F++A+ AP +F+DE+DAI + + K R
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 286 RA--TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343
T L+ QLDG FS V + ATNR D LD +R GR+DR++
Sbjct: 300 EVQRTMLELLNQLDG---------FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFP 350
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LP R QI +HS +D+N++EL T F+GA ++ + E+G++++R G S +
Sbjct: 351 LPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSV 410
Query: 404 QQQDIVD 410
+ +D V+
Sbjct: 411 KHEDFVE 417
>WB|WBGene00018991 [details] [associations]
symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
Length = 432
Score = 333 (122.3 bits), Expect = 1.8e-29, P = 1.8e-29
Identities = 83/247 (33%), Positives = 132/247 (53%)
Query: 168 SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225
S Y E+V G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL AR +A
Sbjct: 172 STY-EMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 230
Query: 226 KESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--- 281
+ F+ SG+E GA + E+F +AR +AP+ +F+DEID+I
Sbjct: 231 HHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRG 290
Query: 282 -DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ QLDG F + + I ATNR D LD +RPGRIDR++
Sbjct: 291 GDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILDSALLRPGRIDRKI 341
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
PD K R QI +HS L + +++ + G SGA+++++ E+G+ ++R+
Sbjct: 342 EFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPGASGAEVKSVCTEAGMFALRERR 401
Query: 401 SKIQQQD 407
+ Q+D
Sbjct: 402 IHVTQED 408
>UNIPROTKB|F1SB53 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
OMA:HIFTIHA EMBL:CU570825 Ensembl:ENSSSCT00000016802 Uniprot:F1SB53
Length = 475
Score = 341 (125.1 bits), Expect = 2.9e-29, P = 2.9e-29
Identities = 80/228 (35%), Positives = 120/228 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 239 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 298
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG
Sbjct: 299 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-------- 350
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRPD LD +RPGR+DR++ LPD + R IF +H+ + D
Sbjct: 351 -FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERD 409
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ FE L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 410 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNK 457
>POMBASE|SPBC16C6.07c [details] [associations]
symbol:rpt1 "19S proteasome regulatory subunit Rpt1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
IntAct:O42931 STRING:O42931 PRIDE:O42931
EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
Length = 438
Score = 331 (121.6 bits), Expect = 3.0e-29, P = 3.0e-29
Identities = 78/228 (34%), Positives = 121/228 (53%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P ++ + G+ +G++L GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 201 SPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARM 260
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDAI G A D + T LI QLDG R I
Sbjct: 261 VRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 320
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
V+F ATNRP+ LD +RPGRIDR++ GLPD + R I +H+ + +D
Sbjct: 321 -------VLF--ATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKD 371
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ +E + +GA++R++ E+G+ ++R ++D +D + K
Sbjct: 372 IRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQK 419
>GENEDB_PFALCIPARUM|PFF0940c [details] [associations]
symbol:PFF0940c "cell division cycle protein 48
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0051726 "regulation of cell cycle" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
ProteinModelPortal:C6KT34 PRIDE:C6KT34
EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
Uniprot:C6KT34
Length = 828
Score = 354 (129.7 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 88/234 (37%), Positives = 128/234 (54%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RGVLL GPPG+GKT AR +A E+G F +G E S+ +G A
Sbjct: 229 HPGLFKTLGVKPPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVM-SKMAGEAEA 287
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N F A +N+PA +F+DEID+IA + + + R L+ +DG K R G
Sbjct: 288 NLRRAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSR-G---- 342
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
V+ I ATNR + +D R GR DR + IG+PD R +I +H+ +L+ DV
Sbjct: 343 ----QVVVIAATNRQNSIDPALRRFGRFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVK 398
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGV 422
EEL T GF GAD+ L E+ + +R+ I +D +++DK++LE M V
Sbjct: 399 LEELASNTHGFVGADLAQLCTEAALTCIREKMDVIDLED--EIIDKEVLESMCV 450
Score = 297 (109.6 bits), Expect = 6.6e-23, P = 6.6e-23
Identities = 79/227 (34%), Positives = 118/227 (51%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG +V L E+++Y + +P ++ + G+ RGVL GPPG GKTL A+ +A E
Sbjct: 482 IGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVLFYGPPGCGKTLLAKAVASECSAN 541
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
FV G E T A + E+F AR AP +F DE+D+I + +
Sbjct: 542 FVSIKGPELLTMWFGESEANVREVFDKARAAAPCVLFFDELDSIGTQRGSSLGDGSGAGD 601
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
++ QL T ID ++ + FI ATNRP+ LD +RPGR+D+ +YI LPD R
Sbjct: 602 RVMNQL-----LTEIDGVGPKKNLFFIGATNRPELLDEALLRPGRLDQLIYIPLPDLGAR 656
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397
+ I +AE+V + L +T GFSGAD+ L + ++R
Sbjct: 657 ISILTAILRKCPVAENVPIDFLAQKTAGFSGADLAELCQRAARAAIR 703
>UNIPROTKB|C6KT34 [details] [associations]
symbol:PFF0940c "Cell division cycle protein 48 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0051726
"regulation of cell cycle" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
ProteinModelPortal:C6KT34 PRIDE:C6KT34
EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
Uniprot:C6KT34
Length = 828
Score = 354 (129.7 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 88/234 (37%), Positives = 128/234 (54%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RGVLL GPPG+GKT AR +A E+G F +G E S+ +G A
Sbjct: 229 HPGLFKTLGVKPPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVM-SKMAGEAEA 287
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N F A +N+PA +F+DEID+IA + + + R L+ +DG K R G
Sbjct: 288 NLRRAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSR-G---- 342
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
V+ I ATNR + +D R GR DR + IG+PD R +I +H+ +L+ DV
Sbjct: 343 ----QVVVIAATNRQNSIDPALRRFGRFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVK 398
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGV 422
EEL T GF GAD+ L E+ + +R+ I +D +++DK++LE M V
Sbjct: 399 LEELASNTHGFVGADLAQLCTEAALTCIREKMDVIDLED--EIIDKEVLESMCV 450
Score = 297 (109.6 bits), Expect = 6.6e-23, P = 6.6e-23
Identities = 79/227 (34%), Positives = 118/227 (51%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG +V L E+++Y + +P ++ + G+ RGVL GPPG GKTL A+ +A E
Sbjct: 482 IGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVLFYGPPGCGKTLLAKAVASECSAN 541
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
FV G E T A + E+F AR AP +F DE+D+I + +
Sbjct: 542 FVSIKGPELLTMWFGESEANVREVFDKARAAAPCVLFFDELDSIGTQRGSSLGDGSGAGD 601
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
++ QL T ID ++ + FI ATNRP+ LD +RPGR+D+ +YI LPD R
Sbjct: 602 RVMNQL-----LTEIDGVGPKKNLFFIGATNRPELLDEALLRPGRLDQLIYIPLPDLGAR 656
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397
+ I +AE+V + L +T GFSGAD+ L + ++R
Sbjct: 657 ISILTAILRKCPVAENVPIDFLAQKTAGFSGADLAELCQRAARAAIR 703
>TIGR_CMR|CPS_1798 [details] [associations]
symbol:CPS_1798 "ATP-dependent peptidase, M41 family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
InterPro:IPR000642 InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR013093
Pfam:PF00004 Pfam:PF01434 Pfam:PF07724 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0006508
GO:GO:0004222 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
eggNOG:COG0542 RefSeq:YP_268529.1 ProteinModelPortal:Q484I6
STRING:Q484I6 GeneID:3520574 KEGG:cps:CPS_1798 PATRIC:21466749
HOGENOM:HOG000133952 ProtClustDB:CLSK741075
BioCyc:CPSY167879:GI48-1868-MONOMER Uniprot:Q484I6
Length = 1284
Score = 364 (133.2 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 117/388 (30%), Positives = 193/388 (49%)
Query: 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
L E++ ++ P + G++ G L SGPPGTGKTL A+ +A E LPF + +E +
Sbjct: 863 LIEVVSWLKAPEKLLNFGIKIPTGFLFSGPPGTGKTLLAKAVAGECELPFFSVAASELST 922
Query: 243 SEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHA-RKDPRRR---ATFEALIAQLD 297
G I ++F+ AR+ AP+ +F+DEIDAIA + D R T AL+ ++D
Sbjct: 923 PHSGGTTENIKQLFATARKYAPSIIFIDEIDAIAAQRTDNSDGSSRDKNLTVNALLTEMD 982
Query: 298 GDKERTGIDRFSLRQAVIFI-CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
G FS+ + +F+ ATN P LD RPGR D +Y LP+ R+ F
Sbjct: 983 G---------FSIAEVPVFVMAATNHPQLLDSAITRPGRFDETIYCDLPNKNARLIFFKR 1033
Query: 357 HSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415
++ +L ++ ++LV G S A+I ++ ES +V + + ++ + I KQ
Sbjct: 1034 FASKHKLNWQETELQQLVSSAQGMSSAEIDQVLRESIYQAVGE-NQQLTTEHI-----KQ 1087
Query: 416 LLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAH--LFPRFDWHAFSQLLPGG 473
+ + ++ + E+KR A HEA H+ LA+ LFP+ F + P
Sbjct: 1088 TM--IRIVYGAPSDHIF---LGAEEKRRTAYHEAAHL-LAYKLLFPKQPID-FITIEP-- 1138
Query: 474 KETAISVFYPREDTIDQGYTTFGYL-KMQMVVAHGGRCAERLVFGD--DVTDGGKDDLEK 530
+ A+ R + Y+ + K+Q+++A GR AE+L GD +V+ G +D+EK
Sbjct: 1139 RNQALGFVATRASEEYESYSKRRVMHKLQVLLA--GRVAEKLCTGDCEEVSTGASNDIEK 1196
Query: 531 ITKIAREMV----ISPQNARLGLAGLTR 554
T++A + I P + +A LT+
Sbjct: 1197 ATQLAMHAIYEGGIEPTVGPVNIAMLTK 1224
Score = 40 (19.1 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 141 YKKYNQLFDMAYAENFILPVGYVSDTKSMYKE-VVLGGDV 179
Y+ Y Q+F + E+FI V+++ YK+ + + GD+
Sbjct: 136 YQHYLQVFKLELDEDFIETQIEVAESY-WYKDNLSVNGDI 174
>FB|FBgn0037742 [details] [associations]
symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
Uniprot:Q9VH79
Length = 405
Score = 330 (121.2 bits), Expect = 3.9e-29, P = 3.9e-29
Identities = 97/300 (32%), Positives = 158/300 (52%)
Query: 119 ILILSLI-RETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVS-DTKSMYKEVVLG 176
+ +LS I RE L +SS L+K+ N L D+ E + +S D K +G
Sbjct: 100 VRVLSTIDREQ---LKPSSSVGLHKQSNCLVDLVPPEADST-ISMLSPDEKPDISYSDIG 155
Query: 177 G-DVW--DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233
G D+ ++ + + + + + Y + G+ RGVLL GPPG GKT+ A+ +A + F+
Sbjct: 156 GLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKTMLAKAVAHHTTASFI 215
Query: 234 FASGAEFTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARKDPRR---RA 287
G+EF G + ++F +A++N+P+ +F+DEIDAIA + A+ R R
Sbjct: 216 RVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIFIDEIDAIATKRFDAQTGADREVQRI 275
Query: 288 TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDA 347
E L+ Q+DG E T I I ATNR D LD +RPGR+DR++ + LPD
Sbjct: 276 LLE-LLNQMDGFDETTNIK---------VIMATNRADTLDPALLRPGRLDRKIELPLPDR 325
Query: 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+Q+ +F ++ + EDV+ E+++ R S ADI + E+G+ +VR+ + +D
Sbjct: 326 RQKRLVFTTITSKMNVGEDVDLEDIIARPDKISNADINAICQEAGMHAVRENRYVVNAKD 385
>FB|FBgn0039788 [details] [associations]
symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
NextBio:834976 Uniprot:Q9VA54
Length = 399
Score = 329 (120.9 bits), Expect = 5.0e-29, P = 5.0e-29
Identities = 96/322 (29%), Positives = 166/322 (51%)
Query: 110 KVLIALLP-GILILSLIRETVMLLHIT-SSRLLYKKYNQLFDM-AYAENFILP-VGYVSD 165
KVL+ + P G ++ + +T+ + +T SSR+ + N+ + + N + P V +
Sbjct: 78 KVLVKVHPEGKYVVD-VDKTINIKDVTPSSRVALR--NESYTLHKILPNKVDPLVSLMLV 134
Query: 166 TK---SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLF 220
K S Y E+V G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL
Sbjct: 135 EKVPDSTY-EMVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLL 193
Query: 221 ARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA 279
AR +A + F+ SG+E G+ + E+F +AR +AP+ +F+DEID+I
Sbjct: 194 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARL 253
Query: 280 RK---DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336
D + T L+ QLDG F + + I ATNR D LD +RPGRI
Sbjct: 254 ETGTGDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDVLDQALLRPGRI 304
Query: 337 DRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396
DR++ P+ + R+ I +HS L +N ++ G SGA+++ + E+G+ ++
Sbjct: 305 DRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYAL 364
Query: 397 RKGHSKIQQQDIVDVLDKQLLE 418
R+ + Q+D + K +++
Sbjct: 365 RERRVHVTQEDFEMAVSKVMMK 386
>WB|WBGene00004503 [details] [associations]
symbol:rpt-3 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
MINT:MINT-212949 STRING:P46502 PaxDb:P46502
EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
Uniprot:P46502
Length = 414
Score = 329 (120.9 bits), Expect = 5.0e-29, P = 5.0e-29
Identities = 76/214 (35%), Positives = 120/214 (56%)
Query: 196 YYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAARINEM 254
Y + G+ RGVL+ GPPG GKT+ A+ +A + F+ G+EF G + ++
Sbjct: 187 YQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDV 246
Query: 255 FSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314
F +A+ N+P+ +F+DEIDAIA + R D + A E L+ + G D+ S V
Sbjct: 247 FRLAKENSPSIIFIDEIDAIATK--RFDAQTGADREVQRILLELLNQMDGFDQ-STNVKV 303
Query: 315 IFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVF 374
I ATNR D LD +RPGR+DR++ LPD +Q+ +F + L++DV+ E+ V
Sbjct: 304 IM--ATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVA 361
Query: 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408
R SGADI ++ E+G+ +VR+ + +D+
Sbjct: 362 RPDKISGADINSICQEAGMQAVRENRYVVLTKDL 395
>UNIPROTKB|Q6GL04 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
"chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
"translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
protein catabolic process" evidence=ISS] [GO:0032403 "protein
complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
InParanoid:Q6GL04 Uniprot:Q6GL04
Length = 805
Score = 356 (130.4 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 83/238 (34%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PD+ R++I +H+ +L++DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 310 (114.2 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 81/237 (34%), Positives = 128/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
+ I + +A+DV+ + L T GFSGAD+ + + +++R+ ++I+++
Sbjct: 654 IAILKANLRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRE 710
Score = 40 (19.1 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
>CGD|CAL0006022 [details] [associations]
symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051091 "positive regulation
of sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
Length = 401
Score = 328 (120.5 bits), Expect = 6.5e-29, P = 6.5e-29
Identities = 108/379 (28%), Positives = 182/379 (48%)
Query: 42 YFLEKLDSSEVAAVVFTEDLKRLYVTM-KEGFPLEYVVD-IPL--DP--YLFETIASSGA 95
YF +++ +E+ T++L+RL K + + D + L +P Y+ E + G
Sbjct: 18 YFEQQIQDTEIRIQQTTQNLRRLEAQRNKLNNKVRQLKDELKLLQEPGSYVGEVVKVMGL 77
Query: 96 EVDLLQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAEN 155
+ L++ IH K ++ + I + L + L S LYK D +
Sbjct: 78 KKVLVK---IHPEGKFIVNVTKDIDVKKLTPSIRVCLK-PDSHDLYKILPTKVDPLVS-- 131
Query: 156 FILPVGYVSDTKSMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
++ V V D S Y ++V G D + ++ + + + + +P + G+ +GV+L GPP
Sbjct: 132 -LMMVEKVPD--STY-DMVGGLDKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPP 187
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEID 272
GTGKTL AR +A + F+ SG+E G+ + E+F +AR +AP+ +F+DEID
Sbjct: 188 GTGKTLLARAVAHHTECKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 247
Query: 273 AIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDL 328
+I D + T L+ QLDG F + + I ATNR D LD
Sbjct: 248 SIGSSRVEGSSGGDSEVQRTMLELLNQLDG---------FESSKDIKIIMATNRLDILDP 298
Query: 329 EFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLV 388
+RPGRIDR++ P R I +HS L +N ++ + G SGAD++ +
Sbjct: 299 ALLRPGRIDRKIEFPAPTVAARTDILKIHSRSMNLTRGINLRKIAEKMNGCSGADVKGVC 358
Query: 389 NESGIMSVRKGHSKIQQQD 407
E+G+ ++R+ + Q+D
Sbjct: 359 TEAGMYALRERRIHVTQED 377
>TAIR|locus:2079742 [details] [associations]
symbol:RPT5A "regulatory particle triple-A ATPase 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
sac development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
Length = 424
Score = 328 (120.5 bits), Expect = 6.5e-29, P = 6.5e-29
Identities = 79/241 (32%), Positives = 131/241 (54%)
Query: 175 LGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG + +L++ +++ M + ++ + GV+ +GVLL GPPGTGKTL AR A ++
Sbjct: 173 IGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT 232
Query: 232 FVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRR 286
F+ +G + GA + + F +A+ AP +F+DEIDAI + D +
Sbjct: 233 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQ 292
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
T L+ QLDG FS + + I ATNR D LD +R GR+DR++ P
Sbjct: 293 RTMLELLNQLDG---------FSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 343
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406
+ R +I +HS + DVNFEEL T F+GA ++ + E+G++++R+ +++ +
Sbjct: 344 EEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 403
Query: 407 D 407
D
Sbjct: 404 D 404
>WB|WBGene00004501 [details] [associations]
symbol:rpt-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
GO:GO:0016887 GO:GO:0000502 GO:GO:0006511 EMBL:Z78012
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
OMA:DIRWELI GeneTree:ENSGT00550000074978 PIR:T20152
RefSeq:NP_506005.1 ProteinModelPortal:Q18787 SMR:Q18787
IntAct:Q18787 MINT:MINT-212537 STRING:Q18787 PaxDb:Q18787
PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1 EnsemblMetazoa:C52E4.4.2
GeneID:179641 KEGG:cel:CELE_C52E4.4 UCSC:C52E4.4.1 CTD:179641
WormBase:C52E4.4 InParanoid:Q18787 NextBio:906264 Uniprot:Q18787
Length = 435
Score = 328 (120.5 bits), Expect = 6.5e-29, P = 6.5e-29
Identities = 74/224 (33%), Positives = 118/224 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P +Y G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 199 HPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 258
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310
+ E+F +AR +F DEIDA+ G AR D + E L+ + +D F
Sbjct: 259 VRELFEMARTKKACLIFFDEIDAVGG--ARFDDGQGGDNEVQRTMLELINQ---LDGFDP 313
Query: 311 RQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFE 370
R + + ATNRPD LD +RPGR+DR++ LPD R I +H+ + D+ ++
Sbjct: 314 RGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYD 373
Query: 371 ELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 374 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINK 417
>UNIPROTKB|Q18787 [details] [associations]
symbol:rpt-1 "26S protease regulatory subunit 7"
species:6239 "Caenorhabditis elegans" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
GO:GO:0002119 GO:GO:0000003 GO:GO:0016887 GO:GO:0000502
GO:GO:0006511 EMBL:Z78012 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
GeneTree:ENSGT00550000074978 PIR:T20152 RefSeq:NP_506005.1
ProteinModelPortal:Q18787 SMR:Q18787 IntAct:Q18787 MINT:MINT-212537
STRING:Q18787 PaxDb:Q18787 PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1
EnsemblMetazoa:C52E4.4.2 GeneID:179641 KEGG:cel:CELE_C52E4.4
UCSC:C52E4.4.1 CTD:179641 WormBase:C52E4.4 InParanoid:Q18787
NextBio:906264 Uniprot:Q18787
Length = 435
Score = 328 (120.5 bits), Expect = 6.5e-29, P = 6.5e-29
Identities = 74/224 (33%), Positives = 118/224 (52%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAR 250
+P +Y G++ +GVLL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 199 HPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 258
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310
+ E+F +AR +F DEIDA+ G AR D + E L+ + +D F
Sbjct: 259 VRELFEMARTKKACLIFFDEIDAVGG--ARFDDGQGGDNEVQRTMLELINQ---LDGFDP 313
Query: 311 RQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFE 370
R + + ATNRPD LD +RPGR+DR++ LPD R I +H+ + D+ ++
Sbjct: 314 RGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYD 373
Query: 371 ELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
L +GA+IR++ E+G+ ++R ++D ++ ++K
Sbjct: 374 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINK 417
>CGD|CAL0005257 [details] [associations]
symbol:RPT2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045732 "positive regulation
of protein catabolic process" evidence=IEA] [GO:0043171 "peptide
catabolic process" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 CGD:CAL0005257 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000051 EMBL:AACQ01000050
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03062 RefSeq:XP_717718.1
RefSeq:XP_717812.1 ProteinModelPortal:Q5A7M6 STRING:Q5A7M6
GeneID:3640525 GeneID:3640683 KEGG:cal:CaO19.12895
KEGG:cal:CaO19.5440 Uniprot:Q5A7M6
Length = 465
Score = 336 (123.3 bits), Expect = 7.7e-29, P = 7.7e-29
Identities = 78/255 (30%), Positives = 138/255 (54%)
Query: 164 SDTKSMYKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFAR 222
S T+S Y ++ L + ++ + + + + +P Y E G++ +GV+L G PGTGKTL A+
Sbjct: 180 SPTES-YADIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAK 238
Query: 223 TLAKESGLPFVFASGAEFTDSEKSGAARI-NEMFSIARRNAPAFVFVDEIDAIAGRHARK 281
+A ++ F+ G+E R+ ++F IA +AP+ VF+DEIDAI +
Sbjct: 239 AVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFQIAADHAPSIVFIDEIDAIGTKRYES 298
Query: 282 DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLY 341
+ + +L +D F R + I ATN+ + LD +RPGRIDR++
Sbjct: 299 TSGGEREIQRTMLELLNQ-----LDGFDDRGDIKVIMATNKIESLDPALIRPGRIDRKIL 353
Query: 342 IGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401
PDA + +I +H++ LA+DVN +E+V SGADI+ + E+G++++R+
Sbjct: 354 FENPDANTKKKILTIHTSKMSLADDVNLDEIVTGKDDLSGADIKAICTEAGLLALRERRM 413
Query: 402 KIQQQDIVDVLDKQL 416
+++ +D ++ L
Sbjct: 414 QVKAEDFKSAKERVL 428
>UNIPROTKB|P23787 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
"response to DNA damage stimulus" evidence=ISS] [GO:0016567
"protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
[GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0035101 "FACT
complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
Length = 805
Score = 356 (130.4 bits), Expect = 8.4e-29, Sum P(2) = 8.4e-29
Identities = 83/238 (34%), Positives = 134/238 (56%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH---- 340
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PD+ R++I +H+ +L++DV+
Sbjct: 341 -----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 310 (114.2 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 81/237 (34%), Positives = 129/237 (54%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAEF-TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290
F+ G E T A + E+F AR+ AP +F DE+D+IA +
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350
+I Q+ T +D S+++ V I ATNRPD +D +RPGR+D+ +YI LPD K R
Sbjct: 599 RVINQI-----LTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 351 VQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-HSKIQQQ 406
+ I + +A+DV+ + L T GFSGAD+ + + +++R+ ++I+++
Sbjct: 654 MAILKANLRKSPVAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRE 710
Score = 38 (18.4 bits), Expect = 8.4e-29, Sum P(2) = 8.4e-29
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 517 GDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560
G ++ DGG I +I EM + + G T R ++D
Sbjct: 587 GGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIGATNRPDIID 630
>WB|WBGene00004505 [details] [associations]
symbol:rpt-5 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0005737 GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853
GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:FO080337
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371
SMR:O76371 IntAct:O76371 MINT:MINT-211164 STRING:O76371
PaxDb:O76371 EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2
GeneID:172238 KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238
WormBase:F56H1.4 InParanoid:O76371 NextBio:874627 Uniprot:O76371
Length = 430
Score = 325 (119.5 bits), Expect = 1.4e-28, P = 1.4e-28
Identities = 80/250 (32%), Positives = 139/250 (55%)
Query: 175 LGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG + +L++ +++ M + ++ G+ +GVL+ GPPGTGKT+ AR +A ++
Sbjct: 179 IGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQTKST 238
Query: 232 FVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARK--DPRRR 286
F+ +G + GA + + F++A+ APA +F+DE+DAI + + K D +
Sbjct: 239 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 298
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
T L+ QLDG F + I ATNR D LD +R GR+DR++ + P+
Sbjct: 299 RTMLELLNQLDG---------FQPNDDIKVIAATNRIDVLDPALLRSGRLDRKIELPHPN 349
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406
R +I +HS + +DVNFEEL T F+GA + + E+G++++R+ ++I +
Sbjct: 350 EDARARIMQIHSRKMNVNKDVNFEELARCTDDFNGAQCKAVCVEAGMIALRRDATEILHE 409
Query: 407 DIVD-VLDKQ 415
D +D +L+ Q
Sbjct: 410 DFMDAILEVQ 419
>UNIPROTKB|O76371 [details] [associations]
symbol:rpt-5 "Protein RPT-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
GeneTree:ENSGT00560000077230 EMBL:FO080337 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371 SMR:O76371
IntAct:O76371 MINT:MINT-211164 STRING:O76371 PaxDb:O76371
EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2 GeneID:172238
KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238 WormBase:F56H1.4
InParanoid:O76371 NextBio:874627 Uniprot:O76371
Length = 430
Score = 325 (119.5 bits), Expect = 1.4e-28, P = 1.4e-28
Identities = 80/250 (32%), Positives = 139/250 (55%)
Query: 175 LGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG + +L++ +++ M + ++ G+ +GVL+ GPPGTGKT+ AR +A ++
Sbjct: 179 IGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQTKST 238
Query: 232 FVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARK--DPRRR 286
F+ +G + GA + + F++A+ APA +F+DE+DAI + + K D +
Sbjct: 239 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 298
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
T L+ QLDG F + I ATNR D LD +R GR+DR++ + P+
Sbjct: 299 RTMLELLNQLDG---------FQPNDDIKVIAATNRIDVLDPALLRSGRLDRKIELPHPN 349
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406
R +I +HS + +DVNFEEL T F+GA + + E+G++++R+ ++I +
Sbjct: 350 EDARARIMQIHSRKMNVNKDVNFEELARCTDDFNGAQCKAVCVEAGMIALRRDATEILHE 409
Query: 407 DIVD-VLDKQ 415
D +D +L+ Q
Sbjct: 410 DFMDAILEVQ 419
>UNIPROTKB|F1MWE0 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:DAAA02041602 IPI:IPI00701790
UniGene:Bt.49089 Ensembl:ENSBTAT00000028983 NextBio:20868523
Uniprot:F1MWE0
Length = 456
Score = 331 (121.6 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 77/240 (32%), Positives = 137/240 (57%)
Query: 182 LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241
L++ +++ M + ++ G+Q +GVL+ GPPGTGKTL AR A ++ F+ +G +
Sbjct: 215 LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLV 274
Query: 242 DSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARK--DPRRRATFEALIAQL 296
GA + + F++A+ AP+ +F+DE+DAI + + K D + T L+ QL
Sbjct: 275 QMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 334
Query: 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356
DG + T + I ATNR D LD +R GR+DR++ +P+ + R +I +
Sbjct: 335 DGFQPNTQVK---------VIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQI 385
Query: 357 HSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
HS ++ DVN+EEL T F+GA + + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 386 HSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQ 445
>SGD|S000003016 [details] [associations]
symbol:RPT6 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0034515
"proteasome storage granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IGI;IMP] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019904 "protein domain specific binding"
evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IPI] [GO:0006289 "nucleotide-excision
repair" evidence=IGI] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IMP] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003016
GO:GO:0005524 GO:GO:0005634 GO:GO:0019904 GO:GO:0051091
GO:GO:0043161 EMBL:BK006941 GO:GO:0016887 GO:GO:0006338
GO:GO:0043433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0034515
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03066
OMA:TEILRIH GeneTree:ENSGT00550000074947 OrthoDB:EOG44N21J
EMBL:X66400 EMBL:L01626 EMBL:Z72570 EMBL:AY693135 PIR:S64052
RefSeq:NP_011467.1 ProteinModelPortal:Q01939 SMR:Q01939
DIP:DIP-979N IntAct:Q01939 MINT:MINT-568023 STRING:Q01939
PaxDb:Q01939 PeptideAtlas:Q01939 EnsemblFungi:YGL048C GeneID:852834
KEGG:sce:YGL048C NextBio:972403 Genevestigator:Q01939
GermOnline:YGL048C Uniprot:Q01939
Length = 405
Score = 323 (118.8 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 106/378 (28%), Positives = 180/378 (47%)
Query: 42 YFLEKLDSSEVAAVVFTEDLKRLYVTMKE-GFPLEYVVD---IPLDP--YLFETIASSGA 95
YF +K+ +E+ TE+++RL + ++ D + +P Y+ E I +
Sbjct: 22 YFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIV-S 80
Query: 96 EVDLLQKRQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAEN 155
+ +L K Q K ++ + I + L + L + S +L+K D +
Sbjct: 81 DKKVLVKVQPEG--KYIVDVAKDINVKDLKASQRVCLR-SDSYMLHKVLENKADPLVS-- 135
Query: 156 FILPVGYVSDTKSMYKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPG 214
++ V V D S Y V L + ++ + + + + +P + G+ +GV+L GPPG
Sbjct: 136 -LMMVEKVPD--STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPG 192
Query: 215 TGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDA 273
TGKTL AR +A + F+ SGAE G+ + E+F +AR +AP+ +F+DEID+
Sbjct: 193 TGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252
Query: 274 IAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLE 329
I D + T L+ QLDG F + + I ATNR D LD
Sbjct: 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDG---------FETSKNIKIIMATNRLDILDPA 303
Query: 330 FVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVN 389
+RPGRIDR++ P R +I +HS L +N ++ + G SGAD++ +
Sbjct: 304 LLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363
Query: 390 ESGIMSVRKGHSKIQQQD 407
E+G+ ++R+ + Q+D
Sbjct: 364 EAGMYALRERRIHVTQED 381
>DICTYBASE|DDB_G0292382 [details] [associations]
symbol:psmC5 "HIV TAT binding-protein-related"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0005838 "proteasome regulatory particle"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
ProtClustDB:CLSZ2429412 Uniprot:P34124
Length = 403
Score = 322 (118.4 bits), Expect = 2.9e-28, P = 2.9e-28
Identities = 110/387 (28%), Positives = 182/387 (47%)
Query: 41 TYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPLDPYLFETIASSGAEVDLL 100
+Y+ K++ E+ +DL+RL E ++ L L S AEV L
Sbjct: 18 SYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQ--LLTNPGSHVAEVVKL 75
Query: 101 QKRQIHYFLKVLIALLP-GILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILP 159
+ KVL+ + P G ++ I TV + +T S K+ N I P
Sbjct: 76 MGKN-----KVLVKVNPEGKFVVD-IDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDP 129
Query: 160 -VGYVSDTK---SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPP 213
V + K S Y ++V G D + ++ + + + + +P + G+ +GVLL GPP
Sbjct: 130 LVSLMKVEKIPDSTY-DMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPP 188
Query: 214 GTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEID 272
GTGKTL AR +A + F+ SG+E G+ + E+F +AR +AP+ +F+DEID
Sbjct: 189 GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEID 248
Query: 273 AIAGRHARK-----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327
+I D + T L+ QLDG + S + + +C TNR D LD
Sbjct: 249 SIGSSRGESGSGGGDSEVQRTMLELLNQLDGFE--------STKNIKVLMC-TNRIDILD 299
Query: 328 LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNL 387
+RPGRIDR++ P R+ I +HS L +N +++ + G SGA+++ +
Sbjct: 300 PALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAV 359
Query: 388 VNESGIMSVRKGHSKIQQQDIVDVLDK 414
E+G+ ++R+ + Q+D + K
Sbjct: 360 CTEAGMYALRERRVHVSQEDFEMAVSK 386
>POMBASE|SPCC576.10c [details] [associations]
symbol:rpt3 "19S proteasome regulatory subunit Rpt3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
Length = 389
Score = 322 (118.4 bits), Expect = 2.9e-28, P = 2.9e-28
Identities = 82/228 (35%), Positives = 124/228 (54%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
EL + G+ Y + G+ RGVLL GPPGTGKT+ + +A + F+ G+EF
Sbjct: 151 ELPLTQGD--LYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKY 208
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA--LIAQLDGDKE 301
G + ++F +AR NAPA +F+DEIDAIA + R D + A E ++ +L
Sbjct: 209 LGEGPRMVRDVFRMARENAPAIIFIDEIDAIATK--RFDAQTGADREVQRILIEL----- 261
Query: 302 RTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL-YIGLPDAKQRVQIFDVHSAG 360
T +D F V I ATNR D LD +RPGR+DR++ + D +QR +F +A
Sbjct: 262 LTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAK 321
Query: 361 KQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408
L+ +V+ + + R SGA I ++ ++G+++VRK I Q DI
Sbjct: 322 MLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDI 369
>UNIPROTKB|J9NWA6 [details] [associations]
symbol:LOC100687152 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AAEX03026457 Ensembl:ENSCAFT00000026372 OMA:REAVEQP
Uniprot:J9NWA6
Length = 434
Score = 321 (118.1 bits), Expect = 3.8e-28, P = 3.8e-28
Identities = 82/274 (29%), Positives = 148/274 (54%)
Query: 158 LPVGYVSDTKSM---------YKEVV-LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGV 207
LP Y S K+M Y ++ L + +L++ +++ M + ++ G+Q +GV
Sbjct: 159 LPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 218
Query: 208 LLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFV 266
L+ GPPGTGKTL AR A ++ F+ +G + GA + + F++A+ AP+ +
Sbjct: 219 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 278
Query: 267 FVDEIDAIAGRH--ARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
F+DE+DA + + K D + T L+ QLDG + T + I ATNR
Sbjct: 279 FIDELDATGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVK---------VIAATNR 329
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGA 382
D LD +R GR+D+++ +P+ + R +I +HS ++ DVN+EEL F+GA
Sbjct: 330 VDILDPALLRSGRLDQKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCMDDFNGA 389
Query: 383 DIRNLVNESGIMSVRKGHSKIQQQDIVD-VLDKQ 415
+ + E+G++++R+G +++ +D ++ +L+ Q
Sbjct: 390 QCKAVCVEAGMIALRRGTTELTHEDYMEGILEVQ 423
>TAIR|locus:2036099 [details] [associations]
symbol:RPT5B "26S proteasome AAA-ATPase subunit RPT5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005516 "calmodulin
binding" evidence=ISS] [GO:0010255 "glucose mediated signaling
pathway" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0009553 "embryo sac
development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0006094 "gluconeogenesis" evidence=RCA] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0007010 "cytoskeleton
organization" evidence=RCA] [GO:0009407 "toxin catabolic process"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0009555
GO:GO:0000502 GO:GO:0017111 GO:GO:0009553 EMBL:AC000106
GO:GO:0010498 GO:GO:0010255 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03065 HOGENOM:HOG000225143 ProtClustDB:CLSN2679225
EMBL:EU980096 EMBL:AY050423 EMBL:AF412095 EMBL:AY124813
IPI:IPI00549144 PIR:C86223 RefSeq:NP_172384.1 UniGene:At.10379
UniGene:At.42241 ProteinModelPortal:O04019 SMR:O04019 IntAct:O04019
STRING:O04019 PaxDb:O04019 PRIDE:O04019 EnsemblPlants:AT1G09100.1
GeneID:837431 KEGG:ath:AT1G09100 GeneFarm:1498 TAIR:At1g09100
InParanoid:O04019 OMA:VEILEMS PhylomeDB:O04019
Genevestigator:O04019 Uniprot:O04019
Length = 423
Score = 321 (118.1 bits), Expect = 3.8e-28, P = 3.8e-28
Identities = 78/241 (32%), Positives = 130/241 (53%)
Query: 175 LGG---DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG + +L++ +++ M + Q+ + G++ +GVLL GPPGTGKTL AR A ++
Sbjct: 172 IGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNAT 231
Query: 232 FVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRR 286
F+ +G + GA + + F +A+ +P +F+DEIDAI + D +
Sbjct: 232 FLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 291
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
T L+ QLDG FS + I ATNR D LD +R GR+DR++ P
Sbjct: 292 RTMLELLNQLDG---------FSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 342
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406
+ R +I +HS + DVNFEEL T F+GA ++ + E+G++++R+ +++ +
Sbjct: 343 EEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 402
Query: 407 D 407
D
Sbjct: 403 D 403
>UNIPROTKB|F1NU79 [details] [associations]
symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
Ensembl:ENSGALT00000000469 Uniprot:F1NU79
Length = 412
Score = 320 (117.7 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 83/266 (31%), Positives = 137/266 (51%)
Query: 168 SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225
S Y E++ G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL AR +A
Sbjct: 152 STY-EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 210
Query: 226 KESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--- 281
+ F+ SG+E GA + E+F +AR +AP+ +F+DEID+I
Sbjct: 211 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 270
Query: 282 -DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ QLDG F + + I ATNR D LD +RPGRIDR++
Sbjct: 271 GDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILDSALLRPGRIDRKI 321
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
P+ + R+ I +HS L +N ++ G SGA+++ + E+G+ ++R+
Sbjct: 322 EFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR 381
Query: 401 SKIQQQD----IVDVLDKQLLEGMGV 422
+ Q+D + V+ K + M +
Sbjct: 382 VHVTQEDFEMAVAKVMQKDSEKNMSI 407
>UNIPROTKB|P62194 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
Length = 406
Score = 320 (117.7 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 83/266 (31%), Positives = 137/266 (51%)
Query: 168 SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225
S Y E++ G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL AR +A
Sbjct: 146 STY-EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 204
Query: 226 KESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--- 281
+ F+ SG+E GA + E+F +AR +AP+ +F+DEID+I
Sbjct: 205 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 264
Query: 282 -DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ QLDG F + + I ATNR D LD +RPGRIDR++
Sbjct: 265 GDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILDSALLRPGRIDRKI 315
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
P+ + R+ I +HS L +N ++ G SGA+++ + E+G+ ++R+
Sbjct: 316 EFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR 375
Query: 401 SKIQQQD----IVDVLDKQLLEGMGV 422
+ Q+D + V+ K + M +
Sbjct: 376 VHVTQEDFEMAVAKVMQKDSEKNMSI 401
>UNIPROTKB|P62195 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
"nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043069 "negative regulation of programmed cell
death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
[GO:0003712 "transcription cofactor activity" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
Ensembl:ENST00000375812 Ensembl:ENST00000580864
Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
Length = 406
Score = 320 (117.7 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 83/266 (31%), Positives = 137/266 (51%)
Query: 168 SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225
S Y E++ G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL AR +A
Sbjct: 146 STY-EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 204
Query: 226 KESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--- 281
+ F+ SG+E GA + E+F +AR +AP+ +F+DEID+I
Sbjct: 205 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 264
Query: 282 -DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ QLDG F + + I ATNR D LD +RPGRIDR++
Sbjct: 265 GDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILDSALLRPGRIDRKI 315
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
P+ + R+ I +HS L +N ++ G SGA+++ + E+G+ ++R+
Sbjct: 316 EFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR 375
Query: 401 SKIQQQD----IVDVLDKQLLEGMGV 422
+ Q+D + V+ K + M +
Sbjct: 376 VHVTQEDFEMAVAKVMQKDSEKNMSI 401
>UNIPROTKB|P62197 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
Uniprot:P62197
Length = 406
Score = 320 (117.7 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 83/266 (31%), Positives = 137/266 (51%)
Query: 168 SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225
S Y E++ G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL AR +A
Sbjct: 146 STY-EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 204
Query: 226 KESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--- 281
+ F+ SG+E GA + E+F +AR +AP+ +F+DEID+I
Sbjct: 205 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 264
Query: 282 -DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ QLDG F + + I ATNR D LD +RPGRIDR++
Sbjct: 265 GDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILDSALLRPGRIDRKI 315
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
P+ + R+ I +HS L +N ++ G SGA+++ + E+G+ ++R+
Sbjct: 316 EFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR 375
Query: 401 SKIQQQD----IVDVLDKQLLEGMGV 422
+ Q+D + V+ K + M +
Sbjct: 376 VHVTQEDFEMAVAKVMQKDSEKNMSI 401
>UNIPROTKB|Q4RG45 [details] [associations]
symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008134 "transcription factor binding" evidence=ISS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
Length = 406
Score = 320 (117.7 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 83/266 (31%), Positives = 137/266 (51%)
Query: 168 SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225
S Y E++ G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL AR +A
Sbjct: 146 STY-EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 204
Query: 226 KESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--- 281
+ F+ SG+E GA + E+F +AR +AP+ +F+DEID+I
Sbjct: 205 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 264
Query: 282 -DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ QLDG F + + I ATNR D LD +RPGRIDR++
Sbjct: 265 GDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILDSALLRPGRIDRKI 315
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
P+ + R+ I +HS L +N ++ G SGA+++ + E+G+ ++R+
Sbjct: 316 EFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR 375
Query: 401 SKIQQQD----IVDVLDKQLLEGMGV 422
+ Q+D + V+ K + M +
Sbjct: 376 VHVTQEDFEMAVAKVMQKDSEKNMSI 401
>UNIPROTKB|Q6AZU7 [details] [associations]
symbol:Q6AZU7 "Putative uncharacterized protein"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
Length = 414
Score = 320 (117.7 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 83/266 (31%), Positives = 137/266 (51%)
Query: 168 SMYKEVVLGGD--VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225
S Y E++ G D + ++ + + + + +P + G+ +GVLL GPPGTGKTL AR +A
Sbjct: 154 STY-EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 212
Query: 226 KESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--- 281
+ F+ SG+E GA + E+F +AR +AP+ +F+DEID+I
Sbjct: 213 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 272
Query: 282 -DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D + T L+ QLDG F + + I ATNR D LD +RPGRIDR++
Sbjct: 273 GDSEVQRTMLELLNQLDG---------FEATKNIKVIMATNRIDILDSALLRPGRIDRKI 323
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
P+ + R+ I +HS L +N ++ G SGA+++ + E+G+ ++R+
Sbjct: 324 EFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR 383
Query: 401 SKIQQQD----IVDVLDKQLLEGMGV 422
+ Q+D + V+ K + M +
Sbjct: 384 VHVTQEDFEMAVAKVMQKDSEKNMSI 409
WARNING: HSPs involving 445 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 612 612 0.00088 120 3 11 22 0.36 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 695
No. of states in DFA: 614 (65 KB)
Total size of DFA: 304 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 50.73u 0.11s 50.84t Elapsed: 00:00:04
Total cpu time: 50.79u 0.11s 50.90t Elapsed: 00:00:04
Start: Tue May 21 10:40:25 2013 End: Tue May 21 10:40:29 2013
WARNINGS ISSUED: 2