BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007214
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 228 bits (581), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 215/383 (56%), Gaps = 31/383 (8%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
+ + +K+V + + L E++ ++ +P ++ G + +G+LL GPPGTGKTL AR
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARA 68
Query: 224 LAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH---- 278
+A E+ +PF SG++F + GAAR+ ++F+ A+ +AP VF+DEIDA+ GRH
Sbjct: 69 VAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV-GRHRGAG 127
Query: 279 -ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337
R T L+ ++DG F ++ +I + ATNRPD LD +RPGR D
Sbjct: 128 LGGGHDEREQTLNQLLVEMDG---------FDSKEGIIVMAATNRPDILDPALLRPGRFD 178
Query: 338 RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397
+++ + PD R +I ++H+ K LAEDVN E + RT GF GAD+ NLVNE+ +++ R
Sbjct: 179 KKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR 238
Query: 398 KGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHL 457
+G KI +D + +D+ ++ G + +S +KR++A HEAGH V++ +
Sbjct: 239 EGRDKITMKDFEEAIDR-VIAG---------PARKSLLISPAEKRIIAYHEAGHAVVSTV 288
Query: 458 FPRFD-WHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVF 516
P + H S + G K ++ P ED + L ++ GGR AE +VF
Sbjct: 289 VPNGEPVHRISIIPRGYKALGYTLHLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVF 345
Query: 517 GDDVTDGGKDDLEKITKIAREMV 539
G DVT G +D+E+ T+IAR MV
Sbjct: 346 G-DVTSGAANDIERATEIARNMV 367
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 214/383 (55%), Gaps = 31/383 (8%)
Query: 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFART 223
+ + +K+V + + L E++ ++ +P ++ G + +G+LL GPPGTG TL AR
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARA 68
Query: 224 LAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH---- 278
+A E+ +PF SG++F + GAAR+ ++F+ A+ +AP VF+DEIDA+ GRH
Sbjct: 69 VAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV-GRHRGAG 127
Query: 279 -ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337
R T L+ ++DG F ++ +I + ATNRPD LD +RPGR D
Sbjct: 128 LGGGHDEREQTLNQLLVEMDG---------FDSKEGIIVMAATNRPDILDPALLRPGRFD 178
Query: 338 RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397
+++ + PD R +I ++H+ K LAEDVN E + RT GF GAD+ NLVNE+ +++ R
Sbjct: 179 KKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR 238
Query: 398 KGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHL 457
+G KI +D + +D+ ++ G + +S +KR++A HEAGH V++ +
Sbjct: 239 EGRDKITMKDFEEAIDR-VIAG---------PARKSLLISPAEKRIIAYHEAGHAVVSTV 288
Query: 458 FPRFD-WHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVF 516
P + H S + G K ++ P ED + L ++ GGR AE +VF
Sbjct: 289 VPNGEPVHRISIIPRGYKALGYTLHLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVF 345
Query: 517 GDDVTDGGKDDLEKITKIAREMV 539
G DVT G +D+E+ T+IAR MV
Sbjct: 346 G-DVTSGAANDIERATEIARNMV 367
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 200/356 (56%), Gaps = 29/356 (8%)
Query: 189 YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSG 247
++ NP +++E G + +GVLL GPPG GKT AR +A E+ +PF+ ASG++F + G
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERT 303
AAR+ ++F A+R+AP VF+DEIDA+ + + R T L+ ++DG
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG----- 163
Query: 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL 363
F A++ + ATNRPD LD +RPGR DR++ I PD K R QI +H+ GK L
Sbjct: 164 ----FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL 219
Query: 364 AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVL 423
AEDV+ L RT GF GAD+ NL+NE+ +++ R+G KI +D+ + D+ ++
Sbjct: 220 AEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMM------ 273
Query: 424 LTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYP 483
K +S +R+ A HEAGH + AH D ++P G+ A+ P
Sbjct: 274 ----LPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR--ALGFMMP 327
Query: 484 REDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV 539
R + D + + L Q+ VA GR AE +VF DDVT G ++D + T++AR M+
Sbjct: 328 RRE--DMLHWSRKRLLDQIAVALAGRAAEEIVF-DDVTTGAENDFRQATELARRMI 380
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 200/356 (56%), Gaps = 29/356 (8%)
Query: 189 YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSG 247
++ NP +++E G + +GVLL GPPG GKT AR +A E+ +PF+ ASG++F + G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERT 303
AAR+ ++F A+R+AP VF+DEIDA+ + + R T L+ ++DG
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG----- 172
Query: 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL 363
F A++ + ATNRPD LD +RPGR DR++ I PD K R QI +H+ GK L
Sbjct: 173 ----FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL 228
Query: 364 AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVL 423
AEDV+ L RT GF GAD+ NL+NE+ +++ R+G KI +D+ + D+ ++
Sbjct: 229 AEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMM------ 282
Query: 424 LTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYP 483
K +S +R+ A HEAGH + AH D ++P G+ A+ P
Sbjct: 283 ----LPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR--ALGFMMP 336
Query: 484 REDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMV 539
R + D + + L Q+ VA GR AE +VF DDVT G ++D + T++AR M+
Sbjct: 337 RRE--DMLHWSRKRLLDQIAVALAGRAAEEIVF-DDVTTGAENDFRQATELARRMI 389
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 141/239 (58%), Gaps = 16/239 (6%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E++ ++ P +Y G + +GVLL GPPGTGKTL A+ +A E+ +PF G+ F +
Sbjct: 25 EIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHARKDPRRRATFEALIAQLDG 298
GA+R+ ++F A++ AP+ +F+DEIDAI AG + R T L+A++DG
Sbjct: 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144
Query: 299 DKERTGIDRFSLRQA-VIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357
F A VI + ATNRP+ LD +RPGR DR++ + PD RV+I VH
Sbjct: 145 ---------FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVH 195
Query: 358 SAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
G +LA DVN +E+ T G +GAD+ N++NE+ +++ R +++QQ + + +++ +
Sbjct: 196 IKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGI 254
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 153/257 (59%), Gaps = 16/257 (6%)
Query: 159 PVGYV--SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTG 216
P+G V K +K+V + + L E++ ++ NP +++E G + +GVLL GPPG G
Sbjct: 2 PLGSVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVG 61
Query: 217 KTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275
KT AR +A E+ +PF+ ASG++F + GAAR+ ++F A+R+AP VF+DEIDA+
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 276 GRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFV 331
+ + R T L+ ++DG F A++ + ATNRPD LD +
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDG---------FEKDTAIVVMAATNRPDILDPALL 172
Query: 332 RPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNES 391
RPGR DR++ I PD K R QI +H+ GK LAEDV+ L RT GF GAD+ NL+NE+
Sbjct: 173 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 232
Query: 392 GIMSVRKGHSKIQQQDI 408
+++ R+G KI +D+
Sbjct: 233 ALLAAREGRRKITMKDL 249
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 138/225 (61%), Gaps = 14/225 (6%)
Query: 189 YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSG 247
++ NP +++E G + +GVLL GPPG GKT AR +A E+ +PF+ ASG++F + G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERT 303
AAR+ ++F A+R+AP VF+DEIDA+ + + R T L+ ++DG
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG----- 172
Query: 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL 363
F A++ + ATNRPD LD +RPGR DR++ I PD K R QI +H+ GK L
Sbjct: 173 ----FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL 228
Query: 364 AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408
AEDV+ L RT GF GAD+ NL+NE+ +++ R+G KI +D+
Sbjct: 229 AEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 273
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 144/257 (56%), Gaps = 16/257 (6%)
Query: 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226
K+ + +V + + + EL+ Y+ P ++ + G + +GVL+ GPPGTGKTL A+ +A
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 227 ESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAI-----AGRHAR 280
E+ +PF SG++F + GA+R+ +MF A++ AP +F+DEIDA+ AG
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127
Query: 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340
D R + T ++ ++DG F + +I I ATNRPD LD +RPGR DR++
Sbjct: 128 HDEREQ-TLNQMLVEMDG---------FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
Query: 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400
+GLPD + R QI VH LA D++ + T GFSGAD+ NLVNE+ + + R
Sbjct: 178 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK 237
Query: 401 SKIQQQDIVDVLDKQLL 417
+ + DK ++
Sbjct: 238 RVVSMVEFEKAKDKIMM 254
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 14/241 (5%)
Query: 179 VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238
+ +L + + + + NP + G++ +GVLL GPPGTGKTL A+ +A G F+F+ +
Sbjct: 190 IRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249
Query: 239 EFTDSEKSGAARI-NEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALI 293
D +ARI EMF+ A+ + P +F+DE+DAI GR D + T L+
Sbjct: 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELL 309
Query: 294 AQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353
Q+DG F I ATNRPD LD +RPGR+DR++ I LP+ R++I
Sbjct: 310 TQMDG---------FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEI 360
Query: 354 FDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413
F +H+A + + +FE V + GF+GADIRN E+G ++R I D++ +
Sbjct: 361 FKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVR 420
Query: 414 K 414
K
Sbjct: 421 K 421
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 17/228 (7%)
Query: 185 ELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244
E + Y+ +P ++ + G + +G LL GPPG GKTL A+ +A E+ +PF+ +GAEF +
Sbjct: 20 EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79
Query: 245 KS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDG 298
GAAR+ +F AR AP V++DEIDA+ + + + T L+ ++DG
Sbjct: 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139
Query: 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358
VI + +TNR D LD +RPGR+DR ++I LP ++R +IF+ H
Sbjct: 140 ---------MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190
Query: 359 AGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQ 404
+L + F + L T GFSGADI N+ NE+ + + R+GH+ +
Sbjct: 191 KSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVH 238
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 14/230 (6%)
Query: 190 MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGA 248
+ +P + + G++ +G+LL GPPGTGKTL A+ +A E+ F+ G+E GA
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTG 304
+ + ++F +A+ AP+ +F+DEIDAIA + D + T L+A++DG
Sbjct: 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG------ 150
Query: 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA 364
F R V I ATNRPD LD +RPGR DR + + PD K R++I +H+ LA
Sbjct: 151 ---FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA 207
Query: 365 EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
EDVN EE+ T G GA+++ + E+G+ ++R+ + D ++K
Sbjct: 208 EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 136/241 (56%), Gaps = 21/241 (8%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF----EALIAQLDGDKERTGI 305
N + F A +NAPA +F+DE+DAIA P+R T +++QL T +
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA-------PKREKTHGEVERRIVSQL-----LTLM 332
Query: 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE 365
D R VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+
Sbjct: 333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD 392
Query: 366 DVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLT 425
DV+ E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V +
Sbjct: 393 DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMD 450
Query: 426 E 426
+
Sbjct: 451 D 451
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 136/241 (56%), Gaps = 21/241 (8%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF----EALIAQLDGDKERTGI 305
N + F A +NAPA +F+DE+DAIA P+R T +++QL T +
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA-------PKREKTHGEVERRIVSQL-----LTLM 332
Query: 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE 365
D R VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+
Sbjct: 333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD 392
Query: 366 DVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLT 425
DV+ E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V +
Sbjct: 393 DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMD 450
Query: 426 E 426
+
Sbjct: 451 D 451
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 136/241 (56%), Gaps = 21/241 (8%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF----EALIAQLDGDKERTGI 305
N + F A +NAPA +F+DE+DAIA P+R T +++QL T +
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA-------PKREKTHGEVERRIVSQL-----LTLM 332
Query: 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE 365
D R VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+
Sbjct: 333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD 392
Query: 366 DVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLT 425
DV+ E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V +
Sbjct: 393 DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMD 450
Query: 426 E 426
+
Sbjct: 451 D 451
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 136/241 (56%), Gaps = 21/241 (8%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATF----EALIAQLDGDKERTGI 305
N + F A +NAPA +F+DE+DAIA P+R T +++QL T +
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA-------PKREKTHGEVERRIVSQL-----LTLM 332
Query: 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE 365
D R VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+
Sbjct: 333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD 392
Query: 366 DVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLT 425
DV+ E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V +
Sbjct: 393 DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMD 450
Query: 426 E 426
+
Sbjct: 451 D 451
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 134/238 (56%), Gaps = 15/238 (6%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA----- 339
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 340 ----HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 17/225 (7%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAE-----FTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRR 286
F+ G E F +SE A + E+F AR+ AP +F DE+D+IA
Sbjct: 539 FISIKGPELLTMWFGESE----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
+ +I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD
Sbjct: 595 GAADRVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNES 391
K RV I + +A+DV+ E L T GFSGAD+ + +
Sbjct: 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 134/238 (56%), Gaps = 15/238 (6%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
+P + GV+ RG+LL GPPGTGKTL AR +A E+G F +G E S+ +G +
Sbjct: 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES 284
Query: 252 N--EMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRF 308
N + F A +NAPA +F+DE+DAIA + + R L+ +DG K+R
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA----- 339
Query: 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368
VI + ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+
Sbjct: 340 ----HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD 395
Query: 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 426
E++ T G GAD+ L +E+ + ++RK I +D + +D +++ + V + +
Sbjct: 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 17/225 (7%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
Query: 232 FVFASGAE-----FTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRR 286
F+ G E F +SE A + E+F AR+ AP +F DE+D+IA
Sbjct: 539 FISIKGPELLTMWFGESE----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
+ +I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD
Sbjct: 595 GAADRVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNES 391
K RV I + +A+DV+ E L T GFSGAD+ + +
Sbjct: 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 14/238 (5%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + ++ + + + + +P Y E G++ +GV+L G PGTGKTL A+ +A ++ F+
Sbjct: 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246
Query: 235 ASGAEFTDSEKSGAARI-NEMFSIARRNAPAFVFVDEIDAIAGR----HARKDPRRRATF 289
G+E R+ ++F +A NAP+ VF+DEIDAI + ++ + + T
Sbjct: 247 IVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 306
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG F R V I ATN+ + LD +RPGRIDR++ PD
Sbjct: 307 LELLNQLDG---------FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLST 357
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+ +I +H++ L+EDVN E LV SGADI+ + E+G++++R+ ++ +D
Sbjct: 358 KKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAED 415
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 27/269 (10%)
Query: 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234
L + +L++ +++ M ++ + G++ +G L+ GPPGTGKTL AR A ++ F+
Sbjct: 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245
Query: 235 ASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGR----HARKDPRRRATF 289
+ + GA + + F++A+ AP +F+DE+DAI + D + T
Sbjct: 246 LAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTM 305
Query: 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349
L+ QLDG FS V + ATNR D LD +R GR+DR++ LP
Sbjct: 306 LELLNQLDG---------FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDS 356
Query: 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409
R QI +HS +D+N++EL T F+GA ++ + E+G++++R G S ++ +D V
Sbjct: 357 RAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFV 416
Query: 410 DVLDKQLLEGMGVLLTEEEQQKCEQSVSF 438
EG+ E Q + +SVSF
Sbjct: 417 --------EGIS-----EVQARKSKSVSF 432
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 14/221 (6%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAAR 250
+P + G+ +GV+L GPPGTGKTL AR +A + F+ SGAE G+
Sbjct: 170 HPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRM 229
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +AP+ +F+DEID+I D + T L+ QLDG
Sbjct: 230 VRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG-------- 281
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F + + I ATNR D LD +RPGRIDR++ P R +I +HS L
Sbjct: 282 -FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG 340
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407
+N ++ + G SGAD++ + E+G+ ++R+ + Q+D
Sbjct: 341 INLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQED 381
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 14/228 (6%)
Query: 192 NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAAR 250
+P ++ G+ +G+LL GPPGTGKTL AR +A + F+ G+E GA
Sbjct: 231 SPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARM 290
Query: 251 INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGID 306
+ E+F +AR +F DEIDA+ G A D + T LI QLDG
Sbjct: 291 VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG-------- 342
Query: 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366
F R + + ATNRP+ LD +RPGRIDR++ LPD + R IF +HS +
Sbjct: 343 -FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG 401
Query: 367 VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414
+ +E + +GA++R++ E+G+ ++R ++D + +DK
Sbjct: 402 IRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 123/232 (53%), Gaps = 18/232 (7%)
Query: 177 GDVWDLLDELMIYM----GNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232
G + D+ +EL + + NP Q+ G+ GVLL+GPPG GKTL A+ +A ESGL F
Sbjct: 13 GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNF 72
Query: 233 VFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291
+ G E + + R + ++F A+ +AP +F DE+DA+ R R D R
Sbjct: 73 ISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR--RSD-RETGASVR 129
Query: 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351
++ QL T +D RQ V + ATNRPD +D +RPGR+D+ L++GLP R+
Sbjct: 130 VVNQL-----LTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184
Query: 352 QIFDV---HSAGKQLAEDVNFEELV--FRTVGFSGADIRNLVNESGIMSVRK 398
I + L DVN E + R ++GAD+ LV E+ I ++R+
Sbjct: 185 AILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ 236
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 17/225 (7%)
Query: 175 LGG--DVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP 231
+GG DV L EL+ Y + +P ++ + G+ +GVL GPPG GKTL A+ +A E
Sbjct: 17 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 76
Query: 232 FVFASGAE-----FTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRR 286
F+ G E F +SE A + E+F AR+ AP +F DE+D+IA
Sbjct: 77 FISIKGPELLTMWFGESE----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 132
Query: 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPD 346
+ +I Q+ T +D S ++ V I ATNRPD +D +RPGR+D+ +YI LPD
Sbjct: 133 GAADRVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187
Query: 347 AKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNES 391
K RV I + +A+DV+ E L T GFSGAD+ + +
Sbjct: 188 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 15/219 (6%)
Query: 196 YYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEM 254
Y + G+ RGVLL GPPGTGKT+ + +A + F+ +G+EF G + ++
Sbjct: 198 YEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDV 257
Query: 255 FSIARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310
F +AR NAP+ +F+DE+D+IA + D + L+ Q+DG F
Sbjct: 258 FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG---------FDQ 308
Query: 311 RQAVIFICATNRPDELDLEFVRPGRIDRRL-YIGLPDAKQRVQIFDVHSAGKQLAEDVNF 369
V I ATNR D LD +RPGR+DR++ + L D ++R IF ++ LA + +
Sbjct: 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL 368
Query: 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408
+ L+ R SGA I ++ E+G+ +VRK I Q D+
Sbjct: 369 DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 407
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 132/278 (47%), Gaps = 36/278 (12%)
Query: 145 NQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLL--DELMIYMGNPMQYYERGVQ 202
N++ D N+ + V K+ KE+V VW +L D G P
Sbjct: 72 NEIMDHGPPVNW-EDIAGVEFAKATIKEIV----VWPMLRPDIFTGLRGPP--------- 117
Query: 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRN 261
+G+LL GPPGTGKTL + +A +SG F S + T G + +F++AR
Sbjct: 118 --KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 175
Query: 262 APAFVFVDEIDAIAGRH--ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319
PA +F+DEID++ + + RR E L+ QLDG S ++ + A
Sbjct: 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLV-QLDGATT-------SSEDRILVVGA 227
Query: 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI-FDVHSAGKQLAEDVNFEELVFRTVG 378
TNRP E+D R R+ +RLYI LP+A R QI ++ S + + E++V ++
Sbjct: 228 TNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 285
Query: 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416
FSGAD+ L E+ + +R +Q DI + Q+
Sbjct: 286 FSGADMTQLCREASLGPIR----SLQTADIATITPDQV 319
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 16/202 (7%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR--INEMFSIARRNA 262
RG+LL GPPGTGK+ A+ +A E+ F+ + S+ G + + +F +AR N
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 263 PAFVFVDEIDAIAGRHARKDPR--RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320
P+ +F+DEID++ G + + RR E L+ Q+ G G+D ++ + AT
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLV-QMQG----VGVD----NDGILVLGAT 278
Query: 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379
N P LD R R ++R+YI LP+A R +F +H Q + + +F+EL +T G+
Sbjct: 279 NIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGY 336
Query: 380 SGADIRNLVNESGIMSVRKGHS 401
SGADI +V ++ + VRK S
Sbjct: 337 SGADISIIVRDALMQPVRKVQS 358
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 108/202 (53%), Gaps = 16/202 (7%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR--INEMFSIARRNA 262
RG+LL GPPGTGK+ A+ +A E+ F+ + S+ G + + +F +AR N
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 263 PAFVFVDEIDAIAGRHARKDPR--RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320
P+ +F+DEID++ G + + RR E L+ Q+ G G+D ++ + AT
Sbjct: 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLV-QMQG----VGVD----NDGILVLGAT 156
Query: 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379
N P LD R R ++R+YI LP+ R +F +H Q + + +F EL +T G+
Sbjct: 157 NIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGY 214
Query: 380 SGADIRNLVNESGIMSVRKGHS 401
SGADI +V ++ + VRK S
Sbjct: 215 SGADISIIVRDALMQPVRKVQS 236
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 129/257 (50%), Gaps = 16/257 (6%)
Query: 157 ILPVGYVSDTKSMYKEVVLGGD-VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGT 215
++P G +S+ ++ E V G + + L E +I ++ + G+LL GPPGT
Sbjct: 12 LVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT 71
Query: 216 GKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPAFVFVDEIDAI 274
GK+ A+ +A E+ F S ++ + + + ++F++AR N P+ +F+DE+DA+
Sbjct: 72 GKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL 131
Query: 275 AGR--HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332
G + RR E L+ Q++G G D Q V+ + ATN P +LD R
Sbjct: 132 TGTRGEGESEASRRIKTE-LLVQMNG----VGND----SQGVLVLGATNIPWQLDSAIRR 182
Query: 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391
R +RR+YI LPD R +F+++ ++ L T G+SG+DI +V ++
Sbjct: 183 --RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 240
Query: 392 GIMSVRKGHSKIQQQDI 408
+ +RK S +D+
Sbjct: 241 LMQPIRKIQSATHFKDV 257
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 15/207 (7%)
Query: 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPA 264
G+LL GPPGTGK+ A+ +A E+ F S ++ + + + ++F++AR N P+
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 265 FVFVDEIDAIAGR--HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
+F+D++DA+ G + RR E L+ Q++G G D Q V+ + ATN
Sbjct: 113 IIFIDQVDALTGTRGEGESEASRRIKTE-LLVQMNG----VGND----SQGVLVLGATNI 163
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSG 381
P +LD R R +RR+YI LPD R +F+++ ++ L T G+SG
Sbjct: 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSG 221
Query: 382 ADIRNLVNESGIMSVRKGHSKIQQQDI 408
+DI +V ++ + +RK S +D+
Sbjct: 222 SDIAVVVKDALMQPIRKIQSATHFKDV 248
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 15/207 (7%)
Query: 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR-INEMFSIARRNAPA 264
G+LL GPPGTGK+ A+ +A E+ F S ++ + + + ++F++AR N P+
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 265 FVFVDEIDAIAGR--HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322
+F+D++DA+ G + RR E L+ Q++G G D Q V+ + ATN
Sbjct: 131 IIFIDQVDALTGTRGEGESEASRRIKTE-LLVQMNG----VGND----SQGVLVLGATNI 181
Query: 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSG 381
P +LD R R +RR+YI LPD R +F+++ ++ L T G+SG
Sbjct: 182 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSG 239
Query: 382 ADIRNLVNESGIMSVRKGHSKIQQQDI 408
+DI +V ++ + +RK S +D+
Sbjct: 240 SDIAVVVKDALMQPIRKIQSATHFKDV 266
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 23/211 (10%)
Query: 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT-----DSEKSGAARINEMFSIARR 260
G+LL GPPGTGK+ A+ +A E+ F S ++ +SEK + ++F++AR
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK----LVKQLFAMARE 141
Query: 261 NAPAFVFVDEIDAIAGR--HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318
N P+ +F+D++DA+ G + RR E L+ Q++G G D Q V+ +
Sbjct: 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTE-LLVQMNG----VGND----SQGVLVLG 192
Query: 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-QLAEDVNFEELVFRTV 377
ATN P +LD R R +RR+YI LPD R +F+++ + ++ L T
Sbjct: 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTE 250
Query: 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408
G+SG+DI +V ++ + +RK S +D+
Sbjct: 251 GYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 16/200 (8%)
Query: 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNA 262
RG+LL GPPG GKT+ A+ +A ES F S A T G + +F++AR
Sbjct: 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQ 207
Query: 263 PAFVFVDEIDAIAG--RHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320
P+ +F+D++D++ R D RR E LI + DG + G DR V+ + AT
Sbjct: 208 PSIIFIDQVDSLLCERREGEHDASRRLKTEFLI-EFDG-VQSAGDDR------VLVMGAT 259
Query: 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLAEDVNFEELVFRTVG 378
NRP ELD +R R +R+Y+ LP+ + R+ + G L + +L T G
Sbjct: 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDG 316
Query: 379 FSGADIRNLVNESGIMSVRK 398
+SG+D+ L ++ + +R+
Sbjct: 317 YSGSDLTALAKDAALGPIRE 336
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Query: 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARINEMFSIARRNA 262
+G+LL GPPG GKTL AR +A E F+ S A T G + +F++AR
Sbjct: 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ 113
Query: 263 PAFVFVDEID---AIAGRHARKDPRRRAT-----FEALIAQLDGDKERTGIDRFSLRQAV 314
P+ +F+DE+D + + RR T F+ L DGD+ +
Sbjct: 114 PSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR-------------I 160
Query: 315 IFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFD--VHSAGKQLAEDVNFEEL 372
+ + ATNRP ELD +R R +R+Y+ LPD + R + + + G L + L
Sbjct: 161 VVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEA-LRRL 217
Query: 373 VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411
T G+SG+D+ L ++ + +R+ + ++Q +D+
Sbjct: 218 AKITDGYSGSDLTALAKDAALEPIRELN--VEQVKCLDI 254
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 435 SVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTT 494
++S ++K +A+HEAGH ++ + D ++P G ++ P E D+
Sbjct: 10 TISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIE---DKHIYD 66
Query: 495 FGYLKMQMVVAHGGRCAERLVFGDD-VTDGGKDDLEKITKIAREMVISPQNARLGLAGLT 553
L +++V GGR AE + FG D +T G ++DL++ T +A MV + G++
Sbjct: 67 KKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMV--------SMWGMS 118
Query: 554 RRVG 557
+VG
Sbjct: 119 DKVG 122
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSI-------A 258
+LL GP G+GKTL A+TLAK +P + T++ G N + +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 259 RRNAPAFVFVDEIDAIA----GRHARKDPRRRATFEALIAQLDG 298
++ VF+DEID I+ R +D +AL+ ++G
Sbjct: 134 QKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG 177
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAARINEMF 255
R VLL+GPPGTGKT A +A+E G +PF G+E +E + E F
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENF 130
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSE 244
R VLL+GPPGTGKT A +A+E G +PF G+E +E
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 346 DAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399
D +Q+ IF ++ L+E+V+ E+ V R SGADI ++ ESG+++VR+
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARR---- 260
+ +L+ GP G GKT AR LAK + PF+ +FT+ G E+ SI R
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG----KEVDSIIRDLTDS 106
Query: 261 --------NAPAFVFVDEIDAIA--GRHARKDPRRRATFEALIAQLDG 298
VF+DEID I G ++ D R L+ ++G
Sbjct: 107 AGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAE----FTDSEKSGAARINEMFSIARRNA 262
VLL GPP +GKT A +A+ES PF+ + F+++ K A + ++F A ++
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMK--KIFDDAYKSQ 123
Query: 263 PAFVFVDEID 272
+ V VD+I+
Sbjct: 124 LSCVVVDDIE 133
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAE----FTDSEKSGAARINEMFSIARRNA 262
VLL GPP +GKT A +A+ES PF+ + F+++ K A + ++F A ++
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMK--KIFDDAYKSQ 124
Query: 263 PAFVFVDEID 272
+ V VD+I+
Sbjct: 125 LSCVVVDDIE 134
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 344 LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403
LPD + R IF +HS + + +E + +GA++R++ E+G+ ++R
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 404 QQQDIVDVLDK 414
++D + +DK
Sbjct: 67 TEKDFLKAVDK 77
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSI-------AR 259
+LL GP G+GKTL A TLA+ +PF A T++ G N + + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 260 RNAPAFVFVDEIDAIA 275
+ V++D+ID I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSI-------AR 259
+LL GP G+GKTL A TLA+ +PF A T++ G N + + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 260 RNAPAFVFVDEIDAIA 275
+ V++D+ID I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAARINEMF--SIARR 260
R VL++G PGTGKT A +A+ G PF +G+E E S + + F SI R
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 261 ---NAPAFVFVDEIDAIAGR 277
A V + EID I R
Sbjct: 131 IKAGAVHTVSLHEIDVINSR 150
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 23/130 (17%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFAS-GAEFTDSEKSG---------AARINEMFS 256
+ L+GPPG GKT A+++AK G FV S G +SE G RI +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 257 IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR-----FSLR 311
A + P F +DEID ++ R DP A++ LD ++ + D F L
Sbjct: 171 KAGKLNPVF-LLDEIDKMSSDF-RGDPS-----SAMLEVLDPEQNSSFSDHYIEETFDLS 223
Query: 312 QAVIFICATN 321
+ V+FI N
Sbjct: 224 K-VLFIATAN 232
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
+ +L+ GP G GKT AR LAK + PF+ +FT+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
+ +L+ GP G GKT AR LAK + PF+ +FT+
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 87
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
+ +L+ GP G GKT AR LAK + PF+ +FT+
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 94
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 345 PDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQ 404
P+ + R+ I +HS L +N ++ G SGA+++ + E+G+ ++R+ +
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 405 QQD 407
Q+D
Sbjct: 71 QED 73
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
+ +L+ GP G GKT AR LAK + PF+ +FT+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 345 PDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQ 404
P+ + R+ I +HS L +N ++ G SGA+++ + E+G ++R+ +
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVT 62
Query: 405 QQD 407
Q+D
Sbjct: 63 QED 65
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242
+ +L GP G GKT AR LAK + PF+ +FT+
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAARINEMF--SIARR 260
R VL++G PGTGKT A A+ G PF +G+E E S + + F SI R
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 261 ---NAPAFVF---VDEIDAIAGR 277
P V + EID I R
Sbjct: 146 IKEGPPGVVHTVSLHEIDVINSR 168
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAP 263
+ ++L GPPGTGKT A +A+ + + E + SG I E AR+N
Sbjct: 50 LHSMILWGPPGTGKTTLAEVIARYAN------ADVERISAVTSGVKEIREAIERARQNRN 103
Query: 264 A----FVFVDEI 271
A +FVDE+
Sbjct: 104 AGRRTILFVDEV 115
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 349 QRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408
+R IF ++ LA + + + L+ R SGA I ++ E+G+ +VRK I Q D+
Sbjct: 2 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 61
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 30/199 (15%)
Query: 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIAR 259
G R +L GPPG GKT A +A+E G + + ++ A N + +++
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSV 132
Query: 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319
F +E + G+H F ++ ++DG +G DR + Q F
Sbjct: 133 --VGYFKHNEEAQNLNGKH----------FVIIMDEVDG---MSGGDRGGVGQLAQFCRK 177
Query: 320 TNRP-----DELDLEFVRP-GRIDRRLYIGLPDA---KQRVQIFDVHSAGKQLAEDVNFE 370
T+ P +E +L +RP R+ + PDA K R+ + ++ D N
Sbjct: 178 TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR---EKFKLDPN-- 232
Query: 371 ELVFRTVGFSGADIRNLVN 389
++ R + + DIR ++N
Sbjct: 233 -VIDRLIQTTRGDIRQVIN 250
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 206 GVLLSGPPGTGKTLFARTLAKESGLPFV 233
+LL+G PG GKT + LA +SGL ++
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYI 33
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 346 DAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQ 405
D + R IF +HS + + +E + +GA++R++ E+G ++R +
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 406 QDIVDVLDK 414
+D + +DK
Sbjct: 62 KDFLKAVDK 70
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 206 GVLLSGPPGTGKTLFARTLAKESGLPFV 233
+LL+G PG GKT + LA +SGL ++
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYI 40
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGL 230
RG++L GPPG+GKT+ + S L
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNSSL 1074
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 205 RGVLLSGPPGTGKTLFARTLAKESGL 230
RG++L GPPG+GKT+ + S L
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSL 1293
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 196 YYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMF 255
Y ER + + +L SGPPGTGKT A LA++ + E S++ G +
Sbjct: 32 YVER--KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89
Query: 256 SIARRNAP------AFVFVDEIDAIAG 276
R AP +F+DE DA+
Sbjct: 90 KEFARTAPIGGAPFKIIFLDEADALTA 116
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAP--- 263
+L +GPPG GKT A LA+E + E S++ G I E R P
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGG 108
Query: 264 ---AFVFVDEIDAI 274
+F+DE DA+
Sbjct: 109 ASFKIIFLDEADAL 122
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFV 266
+LL GPPG GKT A +A E G+ SG A N + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSL------EEGDIL 94
Query: 267 FVDEIDAIA 275
F+DEI ++
Sbjct: 95 FIDEIHRLS 103
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 196 YYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMF 255
Y ER + + +L SGPPGTGKT A LA++ + E S++ G +
Sbjct: 32 YVER--KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89
Query: 256 SIARRNAP------AFVFVDEIDAIAG 276
R AP +F+DE DA+
Sbjct: 90 KEFARTAPIGGAPFKIIFLDEADALTA 116
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFV 266
+LL GPPG GKT A +A E G+ SG A N + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSL------EEGDIL 94
Query: 267 FVDEIDAIA 275
F+DEI ++
Sbjct: 95 FIDEIHRLS 103
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFV 266
+LL GPPG GKT A +A E G+ SG A N + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSL------EEGDIL 94
Query: 267 FVDEIDAIA 275
F+DEI ++
Sbjct: 95 FIDEIHRLS 103
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 205 RGVLLSGPPGTGKTLF---ARTLAKESGLPFVFASGAEFTDSEKSGAARI 251
R V L+GPPG GKT A + K SG+P +T+ + G RI
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV----DGFYTEEVRQGGRRI 47
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 207 VLLSGPPGTGKTLFARTLAKE 227
VLL+GPPG GKT A +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 207 VLLSGPPGTGKTLFARTLAKE 227
VLL+GPPG GKT A +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 207 VLLSGPPGTGKTLFARTLAKE 227
VLL+GPPG GKT A +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 207 VLLSGPPGTGKTLFARTLAKE 227
VLL+GPPG GKT A +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 207 VLLSGPPGTGKTLFARTLAKE 227
VLL+GPPG GKT A +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1HGU|A Chain A, Human Growth Hormone
Length = 191
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 19/76 (25%)
Query: 155 NFILPVGYVSDTKSMYKEVVLGG----DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLS 210
+++ PVG++ +S++ ++ G DV+DLL +L E G+Q + G L
Sbjct: 85 SWLEPVGFL---RSVFANSLVYGASDSDVYDLLKDL-----------EEGIQTLMGRLED 130
Query: 211 GPPGTGKTLFARTLAK 226
G P TG+ F +T AK
Sbjct: 131 GSPRTGQA-FKQTYAK 145
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFV 233
+LLSG PG+GK+ A LA G+P V
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKV 38
>pdb|1QOZ|A Chain A, Catalytic Core Domain Of Acetyl Xylan Esterase From
Trichoderma Reesei
pdb|1QOZ|B Chain B, Catalytic Core Domain Of Acetyl Xylan Esterase From
Trichoderma Reesei
Length = 207
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 477 AISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVF---GDDVTDGG 524
AI VF RE T+ QGY + + ++ AH G +E +V+ G + GG
Sbjct: 4 AIHVFGARETTVSQGYGSSATVVNLVIQAHPGTTSEAIVYPACGGQASCGG 54
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 207 VLLSGPPGTGKTLFARTLAKE 227
VLL+GPPG G+T A +A E
Sbjct: 54 VLLAGPPGLGRTTLAHIIASE 74
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 207 VLLSGPPGTGKTLFA-RTLAK--ESGLPFVFASGAEFTDSEKSGAARINEMF 255
+ L+G PGTGKT+F+ +AK G P ++ + E DS A + N F
Sbjct: 26 IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDF 77
>pdb|1MU7|A Chain A, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase
(tdp1)- Tungstate Complex
pdb|1MU7|B Chain B, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase
(tdp1)- Tungstate Complex
pdb|1MU9|A Chain A, Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)- Vanadate Complex
pdb|1MU9|B Chain B, Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)- Vanadate Complex
pdb|1NOP|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1) In Complex With Vanadate, Dna And A Human
Topoisomerase I-Derived Peptide
pdb|1NOP|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1) In Complex With Vanadate, Dna And A Human
Topoisomerase I-Derived Peptide
pdb|1RFF|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octapeptide Klnyydpr, And
Tetranucleotide Agtt.
pdb|1RFF|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octapeptide Klnyydpr, And
Tetranucleotide Agtt.
pdb|1RFI|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Pentapeptide Klnyk, And
Tetranucleotide Agtc
pdb|1RFI|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Pentapeptide Klnyk, And
Tetranucleotide Agtc
pdb|1RG1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtt
pdb|1RG1|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtt
pdb|1RG2|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agta
pdb|1RG2|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agta
pdb|1RGT|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtc
pdb|1RGT|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtc
pdb|1RGU|A Chain A, The Crystal Structure Of Human Tyrosyl-dna
Phosphodiesterase Complexed With Vanadate, Octopamine,
And Tetranucleotide Agtg
pdb|1RGU|B Chain B, The Crystal Structure Of Human Tyrosyl-dna
Phosphodiesterase Complexed With Vanadate, Octopamine,
And Tetranucleotide Agtg
pdb|1RH0|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine And Trinucleotide
Gtt
pdb|1RH0|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine And Trinucleotide
Gtt
Length = 485
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 161 GYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSG 211
G V M ++ G D+WD+LD+ GNP Q+Y V V+ SG
Sbjct: 13 GLVPRGSHMLEDPGEGQDIWDMLDK-----GNPFQFYLTRVSGVKPKYNSG 58
>pdb|3PNZ|A Chain A, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|B Chain B, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|C Chain C, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|D Chain D, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|E Chain E, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|F Chain F, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
Length = 330
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 58 TEDLKRLYVTMKEGFPLEYV----VDIPLDPYLFETIASSGAEVDLLQKRQIHYFLKV-- 111
T L+++ + +E PLEY+ +D LDPY + +A +GA + +I Y +
Sbjct: 192 TMALEQIEILKQENIPLEYLSIGHMDRNLDPYYHKQVAKTGAFMSFDGIAKIKYAPESAR 251
Query: 112 LIALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILP 159
+ A+L L+ + +++ T+ + YK Y + Y +P
Sbjct: 252 IAAIL--YLVSEGFEDQILVSGDTARKTYYKHYGHGPGLEYIAKKWVP 297
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFV 233
VLL GPPG GK A LA++ G+P +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQI 29
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPFV 233
VLL GPPG GK A LA++ G+P +
Sbjct: 23 VLLLGPPGAGKGTQAVKLAEKLGIPQI 49
>pdb|2CT6|A Chain A, Solution Structure Of The Sh3 Domain-Binding Glutamic
Acid- Rich-Like Protein 2
Length = 111
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 378 GFSGADIRNLV-NESGIMSVRKGHSKIQQQDIVDVLD--KQLLEGMGVLLTEEEQQKCEQ 434
G SG IR + + SG ++++K +QQD+V L+ K E + + ++EE++Q +
Sbjct: 4 GSSGMVIRVFIASSSGFVAIKK-----KQQDVVRFLEANKIEFEEVDITMSEEQRQWMYK 58
Query: 435 SVSFEKK 441
+V EKK
Sbjct: 59 NVPPEKK 65
>pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
Length = 247
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 207 VLLSGPPGTGKTLFAR 222
VLLSG PGTGKT+F++
Sbjct: 26 VLLSGGPGTGKTIFSQ 41
>pdb|1QZQ|A Chain A, Human Tyrosyl Dna Phosphodiesterase
pdb|1QZQ|B Chain B, Human Tyrosyl Dna Phosphodiesterase
Length = 483
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 176 GGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSG 211
G D+WD+LD+ GNP Q+Y V V+ SG
Sbjct: 26 GQDIWDMLDK-----GNPFQFYLTRVSGVKPKYNSG 56
>pdb|2R44|A Chain A, Crystal Structure Of A Putative Atpase (Chu_0153) From
Cytophaga Hutchinsonii Atcc 33406 At 2.00 A Resolution
Length = 331
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 207 VLLSGPPGTGKTLFARTLAKESGLPF 232
+LL G PG KTL TLAK L F
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTXDLDF 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,868,382
Number of Sequences: 62578
Number of extensions: 776623
Number of successful extensions: 2266
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2076
Number of HSP's gapped (non-prelim): 104
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)