Query 007214
Match_columns 612
No_of_seqs 570 out of 4332
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 20:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 2.7E-98 6E-103 823.7 45.2 531 36-611 23-561 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 2.5E-94 5.5E-99 760.2 34.3 403 164-610 297-704 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 9.7E-89 2.1E-93 758.6 40.2 530 37-611 165-719 (774)
4 CHL00176 ftsH cell division pr 100.0 7.1E-85 1.5E-89 736.3 51.7 532 36-611 50-596 (638)
5 PRK10733 hflB ATP-dependent me 100.0 1.1E-79 2.3E-84 700.4 53.5 527 36-611 30-566 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 4E-72 8.7E-77 623.3 44.0 426 147-611 34-467 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1E-56 2.2E-61 459.8 23.1 246 163-417 143-394 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.6E-53 3.5E-58 502.5 29.8 296 194-518 1620-1968(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 4.4E-49 9.5E-54 428.9 22.6 244 163-415 426-674 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 3.1E-47 6.7E-52 408.8 22.8 245 162-415 502-769 (802)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 3.4E-47 7.4E-52 408.4 19.7 228 166-398 185-414 (802)
12 KOG0727 26S proteasome regulat 100.0 1.5E-43 3.2E-48 346.8 19.8 245 163-416 147-397 (408)
13 KOG0728 26S proteasome regulat 100.0 2.7E-43 5.8E-48 344.6 18.4 245 164-417 140-390 (404)
14 KOG0729 26S proteasome regulat 100.0 2.2E-43 4.7E-48 347.8 15.8 246 163-417 169-420 (435)
15 KOG0652 26S proteasome regulat 100.0 5E-43 1.1E-47 344.4 17.8 245 163-416 163-413 (424)
16 COG1223 Predicted ATPase (AAA+ 100.0 8.6E-43 1.9E-47 342.9 18.6 238 164-415 114-355 (368)
17 KOG0726 26S proteasome regulat 100.0 1.8E-43 3.9E-48 352.1 13.4 247 163-418 177-429 (440)
18 KOG0738 AAA+-type ATPase [Post 100.0 7.8E-42 1.7E-46 352.0 19.8 244 164-415 205-469 (491)
19 KOG0736 Peroxisome assembly fa 100.0 1.6E-41 3.4E-46 372.6 21.4 250 158-415 659-932 (953)
20 PTZ00454 26S protease regulato 100.0 7.3E-41 1.6E-45 360.9 26.3 244 164-416 138-387 (398)
21 PRK03992 proteasome-activating 100.0 3.4E-39 7.4E-44 348.7 25.8 244 164-416 124-373 (389)
22 PTZ00361 26 proteosome regulat 100.0 2.9E-39 6.4E-44 350.8 24.7 245 164-417 176-426 (438)
23 COG0464 SpoVK ATPases of the A 100.0 4E-38 8.7E-43 351.0 24.5 244 163-415 234-483 (494)
24 KOG0735 AAA+-type ATPase [Post 100.0 1.5E-38 3.2E-43 346.4 19.8 226 164-398 660-888 (952)
25 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-37 2.5E-42 362.0 25.3 243 164-415 446-710 (733)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 2.9E-37 6.4E-42 339.7 24.9 238 165-416 222-464 (489)
27 TIGR01242 26Sp45 26S proteasom 100.0 1.2E-36 2.6E-41 326.6 25.1 243 164-415 115-363 (364)
28 KOG0737 AAA+-type ATPase [Post 100.0 4.5E-37 9.7E-42 317.1 20.7 227 163-398 84-314 (386)
29 KOG0739 AAA+-type ATPase [Post 100.0 3.3E-38 7.1E-43 315.4 11.6 225 163-398 125-353 (439)
30 KOG0651 26S proteasome regulat 100.0 7.8E-38 1.7E-42 314.8 12.0 243 165-416 126-374 (388)
31 KOG0730 AAA+-type ATPase [Post 100.0 3.7E-36 8E-41 328.1 15.3 275 166-487 180-457 (693)
32 TIGR03689 pup_AAA proteasome A 100.0 4.2E-34 9E-39 314.6 25.5 246 163-417 174-480 (512)
33 TIGR01243 CDC48 AAA family ATP 100.0 2E-32 4.3E-37 318.2 20.9 225 165-398 172-399 (733)
34 PF01434 Peptidase_M41: Peptid 100.0 7.6E-33 1.6E-37 275.7 15.0 183 404-611 1-187 (213)
35 PLN00020 ribulose bisphosphate 100.0 9.6E-31 2.1E-35 272.9 20.7 222 166-392 110-348 (413)
36 KOG0741 AAA+-type ATPase [Post 100.0 3.1E-31 6.8E-36 281.6 14.5 243 164-416 212-491 (744)
37 KOG0732 AAA+-type ATPase conta 100.0 2.5E-30 5.4E-35 296.7 17.7 227 165-400 259-494 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 6.8E-30 1.5E-34 272.4 15.3 225 164-398 146-374 (428)
39 KOG0736 Peroxisome assembly fa 100.0 8E-28 1.7E-32 265.1 16.3 265 183-488 410-696 (953)
40 KOG0743 AAA+-type ATPase [Post 99.9 2.7E-24 5.9E-29 228.1 17.1 207 166-388 196-413 (457)
41 KOG0742 AAA+-type ATPase [Post 99.9 9.7E-24 2.1E-28 219.1 20.2 232 165-413 349-610 (630)
42 PF00004 AAA: ATPase family as 99.9 3.4E-21 7.4E-26 175.2 13.5 129 207-344 1-132 (132)
43 TIGR02881 spore_V_K stage V sp 99.9 1.7E-20 3.8E-25 192.6 19.8 211 169-397 4-240 (261)
44 CHL00181 cbbX CbbX; Provisiona 99.9 1.1E-20 2.4E-25 196.4 17.8 222 169-408 21-271 (287)
45 TIGR02880 cbbX_cfxQ probable R 99.8 3.7E-20 8E-25 192.4 17.0 210 171-397 22-255 (284)
46 KOG0735 AAA+-type ATPase [Post 99.8 1.5E-19 3.2E-24 198.6 14.8 207 202-416 429-649 (952)
47 PF05496 RuvB_N: Holliday junc 99.8 4.3E-19 9.3E-24 175.2 16.7 201 164-391 17-225 (233)
48 PRK00080 ruvB Holliday junctio 99.8 3E-18 6.6E-23 181.7 19.7 223 164-414 18-249 (328)
49 COG0464 SpoVK ATPases of the A 99.8 1.6E-18 3.4E-23 193.7 16.3 216 190-416 4-227 (494)
50 TIGR00635 ruvB Holliday juncti 99.8 7.3E-18 1.6E-22 176.6 19.2 219 168-414 1-228 (305)
51 COG2255 RuvB Holliday junction 99.8 1.7E-17 3.6E-22 167.0 17.9 225 165-416 20-252 (332)
52 TIGR02902 spore_lonB ATP-depen 99.8 1E-17 2.2E-22 188.0 17.7 222 163-414 57-331 (531)
53 KOG0744 AAA+-type ATPase [Post 99.8 4.2E-18 9E-23 173.4 13.0 232 168-415 139-414 (423)
54 TIGR02639 ClpA ATP-dependent C 99.7 5E-17 1.1E-21 189.3 20.0 222 166-416 177-430 (731)
55 TIGR00763 lon ATP-dependent pr 99.7 1.3E-16 2.8E-21 186.8 21.0 171 172-358 321-505 (775)
56 COG2256 MGS1 ATPase related to 99.7 7.2E-17 1.6E-21 169.3 16.3 205 164-416 17-239 (436)
57 PRK11034 clpA ATP-dependent Cl 99.7 2.3E-16 4.9E-21 182.6 19.4 221 167-416 182-434 (758)
58 PRK04195 replication factor C 99.7 5.7E-16 1.2E-20 172.6 18.9 209 163-412 6-222 (482)
59 PRK14962 DNA polymerase III su 99.7 1.3E-15 2.9E-20 168.2 19.6 205 164-413 7-240 (472)
60 PRK13342 recombination factor 99.7 1.6E-15 3.4E-20 165.9 18.5 201 164-415 5-219 (413)
61 TIGR02928 orc1/cdc6 family rep 99.7 4.5E-15 9.8E-20 159.2 21.3 219 170-415 14-274 (365)
62 PRK14956 DNA polymerase III su 99.7 2.3E-15 4.9E-20 164.6 17.8 210 163-412 10-243 (484)
63 TIGR00362 DnaA chromosomal rep 99.7 4.1E-15 9E-20 162.2 19.8 221 165-415 104-337 (405)
64 PRK00149 dnaA chromosomal repl 99.7 3.3E-15 7.1E-20 165.2 18.7 220 165-415 116-349 (450)
65 PRK12323 DNA polymerase III su 99.6 2.1E-15 4.6E-20 168.7 16.7 208 163-410 8-244 (700)
66 PRK14961 DNA polymerase III su 99.6 5.3E-15 1.1E-19 159.1 19.2 211 163-413 8-242 (363)
67 PLN03025 replication factor C 99.6 2.4E-15 5.2E-20 159.0 16.1 202 163-411 5-219 (319)
68 PRK07003 DNA polymerase III su 99.6 5E-15 1.1E-19 167.5 19.4 208 163-410 8-239 (830)
69 TIGR03345 VI_ClpV1 type VI sec 99.6 5.5E-15 1.2E-19 173.9 20.5 217 166-412 182-428 (852)
70 PRK14960 DNA polymerase III su 99.6 5.6E-15 1.2E-19 165.7 18.9 204 163-411 7-239 (702)
71 PRK06893 DNA replication initi 99.6 1.3E-14 2.8E-19 146.4 19.2 212 164-412 9-227 (229)
72 PRK12402 replication factor C 99.6 9.1E-15 2E-19 154.8 18.0 208 164-413 8-247 (337)
73 PRK06645 DNA polymerase III su 99.6 1.3E-14 2.7E-19 161.3 19.2 213 163-412 13-253 (507)
74 PRK14958 DNA polymerase III su 99.6 6.6E-15 1.4E-19 164.3 17.0 204 163-411 8-240 (509)
75 PRK00411 cdc6 cell division co 99.6 3E-14 6.6E-19 154.4 21.2 220 169-415 28-282 (394)
76 TIGR03420 DnaA_homol_Hda DnaA 99.6 3.6E-14 7.7E-19 141.9 19.5 208 165-412 9-225 (226)
77 PHA02544 44 clamp loader, smal 99.6 2.7E-14 5.8E-19 150.4 19.3 205 163-411 13-227 (316)
78 PRK14088 dnaA chromosomal repl 99.6 2.3E-14 4.9E-19 157.7 18.4 220 165-415 99-332 (440)
79 PRK14086 dnaA chromosomal repl 99.6 3.7E-14 8E-19 159.0 20.1 222 165-416 282-516 (617)
80 PRK07994 DNA polymerase III su 99.6 2.9E-14 6.4E-19 161.6 19.6 204 164-412 9-241 (647)
81 PRK14964 DNA polymerase III su 99.6 2.6E-14 5.6E-19 157.7 18.5 203 164-411 6-237 (491)
82 PRK08691 DNA polymerase III su 99.6 1.7E-14 3.7E-19 163.1 17.2 210 163-412 8-241 (709)
83 PRK14949 DNA polymerase III su 99.6 2.3E-14 4.9E-19 165.0 18.4 194 163-392 8-225 (944)
84 PRK14963 DNA polymerase III su 99.6 3.6E-14 7.9E-19 158.0 19.2 203 164-412 7-237 (504)
85 PRK13341 recombination factor 99.6 2.7E-14 5.8E-19 164.7 18.3 210 163-414 20-246 (725)
86 PRK05563 DNA polymerase III su 99.6 5E-14 1.1E-18 159.1 19.4 203 164-411 9-240 (559)
87 PRK10865 protein disaggregatio 99.6 1.7E-14 3.7E-19 170.1 16.3 165 166-360 173-356 (857)
88 PRK12422 chromosomal replicati 99.6 1.1E-13 2.4E-18 152.2 21.5 228 165-416 105-344 (445)
89 CHL00095 clpC Clp protease ATP 99.6 5.1E-14 1.1E-18 166.1 20.1 161 167-357 175-353 (821)
90 PRK08084 DNA replication initi 99.6 1.1E-13 2.3E-18 140.3 19.2 209 165-412 16-233 (235)
91 COG0466 Lon ATP-dependent Lon 99.6 5.1E-14 1.1E-18 156.6 18.2 172 172-359 324-509 (782)
92 PRK14951 DNA polymerase III su 99.6 4.6E-14 9.9E-19 159.7 18.2 210 163-412 8-246 (618)
93 PRK07940 DNA polymerase III su 99.6 3.9E-14 8.5E-19 153.3 16.6 189 169-387 3-214 (394)
94 PRK14969 DNA polymerase III su 99.6 4.2E-14 9E-19 158.7 17.0 209 164-412 9-241 (527)
95 KOG2028 ATPase related to the 99.6 7.1E-14 1.5E-18 144.5 16.6 209 163-415 130-368 (554)
96 TIGR02640 gas_vesic_GvpN gas v 99.6 9.7E-14 2.1E-18 142.8 17.4 210 178-416 6-258 (262)
97 TIGR02397 dnaX_nterm DNA polym 99.6 9.8E-14 2.1E-18 148.2 18.1 205 164-413 7-240 (355)
98 PRK07764 DNA polymerase III su 99.6 1.1E-13 2.4E-18 161.4 19.6 209 164-411 8-242 (824)
99 KOG2004 Mitochondrial ATP-depe 99.6 2.3E-14 5E-19 158.5 13.0 172 172-359 412-597 (906)
100 TIGR03346 chaperone_ClpB ATP-d 99.6 7.6E-14 1.7E-18 165.1 18.4 202 166-397 168-398 (852)
101 PRK05342 clpX ATP-dependent pr 99.5 1.5E-13 3.2E-18 149.5 18.5 189 165-355 64-322 (412)
102 PRK08903 DnaA regulatory inact 99.5 3.1E-13 6.8E-18 135.7 19.3 205 164-413 11-224 (227)
103 PRK08727 hypothetical protein; 99.5 5.3E-13 1.1E-17 135.1 20.9 209 164-414 12-230 (233)
104 PRK14952 DNA polymerase III su 99.5 1.6E-13 3.4E-18 154.8 18.8 209 164-411 6-240 (584)
105 PRK14959 DNA polymerase III su 99.5 1.5E-13 3.3E-18 154.7 18.3 204 164-412 9-241 (624)
106 PRK10787 DNA-binding ATP-depen 99.5 1.8E-13 3.8E-18 159.7 19.5 171 172-359 323-507 (784)
107 PRK14957 DNA polymerase III su 99.5 2.1E-13 4.6E-18 152.5 19.2 202 164-410 9-239 (546)
108 KOG0989 Replication factor C, 99.5 8E-14 1.7E-18 141.9 13.9 191 163-392 28-235 (346)
109 PRK13407 bchI magnesium chelat 99.5 8.1E-14 1.8E-18 147.5 13.4 228 166-419 3-310 (334)
110 PTZ00112 origin recognition co 99.5 4.1E-13 8.8E-18 152.7 19.7 187 205-415 782-1006(1164)
111 PRK07133 DNA polymerase III su 99.5 2E-13 4.3E-18 155.8 17.4 209 164-412 11-240 (725)
112 PRK14970 DNA polymerase III su 99.5 2.9E-13 6.2E-18 145.8 17.8 210 163-412 9-230 (367)
113 PRK09111 DNA polymerase III su 99.5 3E-13 6.5E-18 153.2 18.5 211 163-413 16-255 (598)
114 PRK14087 dnaA chromosomal repl 99.5 4.1E-13 8.9E-18 148.1 18.7 219 167-415 111-348 (450)
115 PF05673 DUF815: Protein of un 99.5 4.5E-13 9.9E-18 134.3 17.2 193 164-389 20-243 (249)
116 PRK06620 hypothetical protein; 99.5 6.5E-13 1.4E-17 132.7 18.2 199 164-412 9-213 (214)
117 PRK08451 DNA polymerase III su 99.5 3.7E-13 8.1E-18 149.9 17.8 202 163-409 6-236 (535)
118 CHL00081 chlI Mg-protoporyphyr 99.5 3.4E-13 7.5E-18 143.2 16.6 230 166-421 12-328 (350)
119 PRK14965 DNA polymerase III su 99.5 3E-13 6.4E-18 153.5 16.9 203 164-411 9-240 (576)
120 PRK14953 DNA polymerase III su 99.5 5.4E-13 1.2E-17 148.2 18.5 209 164-412 9-241 (486)
121 PRK05896 DNA polymerase III su 99.5 2.8E-13 6E-18 151.9 16.3 203 164-411 9-240 (605)
122 PRK00440 rfc replication facto 99.5 5.8E-13 1.3E-17 139.8 17.5 204 163-413 9-224 (319)
123 PRK06647 DNA polymerase III su 99.5 8.5E-13 1.8E-17 148.9 18.9 209 164-412 9-241 (563)
124 PRK05642 DNA replication initi 99.5 3.6E-12 7.8E-17 129.1 21.3 212 164-412 12-232 (234)
125 TIGR00382 clpX endopeptidase C 99.5 7.8E-13 1.7E-17 143.4 17.4 187 168-356 73-329 (413)
126 PF00308 Bac_DnaA: Bacterial d 99.5 5.9E-13 1.3E-17 133.5 15.4 201 166-395 3-216 (219)
127 TIGR01650 PD_CobS cobaltochela 99.5 4.3E-13 9.4E-18 140.5 14.8 143 204-359 64-234 (327)
128 PRK11034 clpA ATP-dependent Cl 99.5 2.3E-13 5E-18 157.8 13.7 173 172-359 459-667 (758)
129 PRK14955 DNA polymerase III su 99.5 6.8E-13 1.5E-17 144.4 16.4 214 163-412 8-254 (397)
130 PRK06305 DNA polymerase III su 99.5 9.9E-13 2.1E-17 145.1 17.4 204 164-412 10-243 (451)
131 TIGR02639 ClpA ATP-dependent C 99.5 1.2E-12 2.6E-17 152.8 18.7 170 171-359 454-663 (731)
132 PRK14948 DNA polymerase III su 99.5 1.9E-12 4E-17 147.6 19.0 206 164-410 9-240 (620)
133 COG0593 DnaA ATPase involved i 99.5 3.3E-12 7.2E-17 137.2 19.6 224 164-417 80-315 (408)
134 COG1224 TIP49 DNA helicase TIP 99.5 4.5E-12 9.7E-17 131.3 19.5 96 315-413 322-430 (450)
135 TIGR02030 BchI-ChlI magnesium 99.4 1.6E-12 3.5E-17 137.9 16.4 224 169-420 2-314 (337)
136 COG2812 DnaX DNA polymerase II 99.4 8.1E-13 1.7E-17 145.7 14.2 208 164-411 9-240 (515)
137 COG1474 CDC6 Cdc6-related prot 99.4 6.5E-12 1.4E-16 134.8 20.4 190 203-414 41-264 (366)
138 PRK14954 DNA polymerase III su 99.4 4.2E-12 9E-17 144.3 19.6 213 164-412 9-254 (620)
139 PRK14950 DNA polymerase III su 99.4 3.1E-12 6.8E-17 145.7 17.9 209 164-412 9-242 (585)
140 PRK05201 hslU ATP-dependent pr 99.4 8.3E-13 1.8E-17 141.8 11.9 181 172-355 16-345 (443)
141 TIGR02903 spore_lon_C ATP-depe 99.4 1E-11 2.3E-16 141.9 21.4 223 165-414 148-429 (615)
142 TIGR00390 hslU ATP-dependent p 99.4 1.5E-12 3.2E-17 139.9 12.1 181 172-355 13-343 (441)
143 TIGR02442 Cob-chelat-sub cobal 99.4 5.4E-12 1.2E-16 144.9 16.6 226 169-420 2-309 (633)
144 COG0714 MoxR-like ATPases [Gen 99.4 1.3E-11 2.7E-16 131.2 16.7 140 205-356 44-201 (329)
145 PHA02244 ATPase-like protein 99.4 1.7E-11 3.7E-16 130.0 17.1 133 205-354 120-269 (383)
146 cd00009 AAA The AAA+ (ATPases 99.3 1.6E-11 3.5E-16 111.7 13.6 137 181-343 5-150 (151)
147 PRK14971 DNA polymerase III su 99.3 1.8E-11 3.9E-16 139.6 16.8 205 163-412 9-243 (614)
148 TIGR03346 chaperone_ClpB ATP-d 99.3 2.8E-11 6E-16 143.5 18.1 175 170-359 564-777 (852)
149 PRK13531 regulatory ATPase Rav 99.3 6.2E-11 1.4E-15 129.7 18.5 200 204-417 39-285 (498)
150 TIGR03345 VI_ClpV1 type VI sec 99.3 3E-11 6.4E-16 142.6 16.9 172 171-359 566-781 (852)
151 PRK09087 hypothetical protein; 99.3 9.3E-11 2E-15 118.2 17.5 202 164-414 14-221 (226)
152 PF05621 TniB: Bacterial TniB 99.3 1.2E-10 2.6E-15 120.4 18.0 214 173-410 36-284 (302)
153 PRK10865 protein disaggregatio 99.3 6.4E-11 1.4E-15 140.1 18.1 175 169-359 566-780 (857)
154 COG2607 Predicted ATPase (AAA+ 99.3 1.6E-10 3.5E-15 114.4 17.4 170 163-364 52-245 (287)
155 smart00350 MCM minichromosome 99.3 5.4E-11 1.2E-15 133.5 15.1 225 172-414 204-503 (509)
156 CHL00095 clpC Clp protease ATP 99.2 4.7E-11 1E-15 141.1 13.6 139 171-323 509-662 (821)
157 PRK09112 DNA polymerase III su 99.2 3.1E-10 6.6E-15 121.5 17.8 188 165-389 17-242 (351)
158 KOG1969 DNA replication checkp 99.2 4E-10 8.6E-15 125.8 18.9 217 163-399 263-519 (877)
159 PF07728 AAA_5: AAA domain (dy 99.2 1E-11 2.2E-16 115.0 5.3 118 206-336 1-139 (139)
160 KOG1942 DNA helicase, TBP-inte 99.2 5.5E-10 1.2E-14 113.1 17.5 96 315-413 327-436 (456)
161 TIGR02031 BchD-ChlD magnesium 99.2 2.2E-10 4.7E-15 130.5 16.1 201 205-420 17-263 (589)
162 TIGR00368 Mg chelatase-related 99.2 2.3E-10 4.9E-15 127.5 15.9 216 168-413 189-497 (499)
163 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.3E-14 112.5 19.7 189 205-415 44-266 (269)
164 smart00382 AAA ATPases associa 99.2 9.9E-11 2.1E-15 105.3 10.5 122 204-345 2-147 (148)
165 TIGR00678 holB DNA polymerase 99.2 3.2E-10 7E-15 110.6 14.4 144 202-378 12-183 (188)
166 COG0542 clpA ATP-binding subun 99.2 9.5E-11 2.1E-15 134.1 12.0 170 171-359 491-706 (786)
167 COG3829 RocR Transcriptional r 99.2 6.3E-11 1.4E-15 129.3 10.1 216 165-409 239-491 (560)
168 TIGR00764 lon_rel lon-related 99.2 2.7E-10 5.8E-15 130.0 15.5 103 311-415 266-391 (608)
169 TIGR00602 rad24 checkpoint pro 99.2 6.1E-10 1.3E-14 126.7 18.1 220 163-412 76-352 (637)
170 KOG0991 Replication factor C, 99.2 1E-10 2.2E-15 115.1 9.8 208 162-413 18-235 (333)
171 PRK07471 DNA polymerase III su 99.2 8.5E-10 1.8E-14 118.7 17.5 183 166-388 14-239 (365)
172 PF06068 TIP49: TIP49 C-termin 99.2 4.6E-10 1E-14 118.2 14.8 68 167-241 20-89 (398)
173 PRK15424 propionate catabolism 99.2 2.5E-10 5.3E-15 128.1 13.5 216 167-408 215-478 (538)
174 PRK11331 5-methylcytosine-spec 99.1 3.5E-10 7.6E-15 123.0 13.0 149 170-344 174-357 (459)
175 COG0542 clpA ATP-binding subun 99.1 9.7E-10 2.1E-14 125.9 16.6 163 167-358 166-346 (786)
176 PRK05564 DNA polymerase III su 99.1 6.9E-10 1.5E-14 117.1 14.3 169 169-378 2-182 (313)
177 COG3604 FhlA Transcriptional r 99.1 4.9E-10 1.1E-14 121.0 12.4 208 165-395 217-456 (550)
178 COG0470 HolB ATPase involved i 99.1 2.9E-09 6.2E-14 112.0 18.0 155 203-396 23-205 (325)
179 PF07724 AAA_2: AAA domain (Cd 99.1 1.9E-10 4.1E-15 111.0 8.0 118 204-324 3-131 (171)
180 TIGR01817 nifA Nif-specific re 99.1 8.1E-10 1.7E-14 125.0 13.7 216 164-408 189-438 (534)
181 KOG0741 AAA+-type ATPase [Post 99.1 1.5E-09 3.2E-14 117.4 14.8 155 186-356 526-684 (744)
182 TIGR02329 propionate_PrpR prop 99.1 1.2E-09 2.7E-14 122.5 14.2 217 167-409 208-464 (526)
183 COG1219 ClpX ATP-dependent pro 99.1 5E-10 1.1E-14 114.8 9.5 124 173-301 63-205 (408)
184 COG1221 PspF Transcriptional r 99.0 5.3E-10 1.1E-14 120.1 9.5 206 165-396 72-310 (403)
185 PF07726 AAA_3: ATPase family 99.0 2.4E-11 5.2E-16 110.5 -0.7 117 206-336 1-129 (131)
186 PF01078 Mg_chelatase: Magnesi 99.0 1.5E-10 3.2E-15 114.0 4.8 151 169-348 1-205 (206)
187 PRK05022 anaerobic nitric oxid 99.0 2.4E-09 5.3E-14 120.3 14.8 202 169-396 185-421 (509)
188 PRK04132 replication factor C 99.0 3.9E-09 8.5E-14 123.1 16.6 170 207-411 567-750 (846)
189 PRK09862 putative ATP-dependen 99.0 3.2E-09 7E-14 118.0 15.0 216 168-413 188-490 (506)
190 TIGR02974 phageshock_pspF psp 99.0 2.8E-09 6E-14 113.4 13.9 177 203-395 21-233 (329)
191 PRK10820 DNA-binding transcrip 99.0 4.6E-09 1E-13 118.3 16.3 213 166-408 199-447 (520)
192 PRK11608 pspF phage shock prot 99.0 3.5E-09 7.6E-14 112.5 14.4 200 170-395 5-240 (326)
193 PRK07399 DNA polymerase III su 99.0 7.6E-09 1.7E-13 109.2 16.6 182 169-389 2-223 (314)
194 COG2204 AtoC Response regulato 99.0 1.9E-09 4.1E-14 117.8 11.8 213 167-408 137-384 (464)
195 smart00763 AAA_PrkA PrkA AAA d 99.0 5.3E-09 1.1E-13 111.1 14.2 81 168-255 47-141 (361)
196 PRK05707 DNA polymerase III su 99.0 7.9E-09 1.7E-13 109.7 15.5 150 201-379 19-196 (328)
197 COG1220 HslU ATP-dependent pro 99.0 3.6E-09 7.7E-14 109.3 12.3 89 264-355 252-346 (444)
198 PRK11388 DNA-binding transcrip 99.0 9.6E-09 2.1E-13 118.7 17.0 215 167-411 321-567 (638)
199 COG1239 ChlI Mg-chelatase subu 99.0 7.3E-09 1.6E-13 110.6 14.3 168 167-359 13-233 (423)
200 PRK15429 formate hydrogenlyase 99.0 1E-08 2.3E-13 119.3 16.8 205 167-395 372-609 (686)
201 PRK08058 DNA polymerase III su 99.0 5.1E-09 1.1E-13 111.4 12.6 149 169-356 3-180 (329)
202 PRK08116 hypothetical protein; 98.9 3.9E-09 8.4E-14 109.1 11.0 155 167-347 81-251 (268)
203 PTZ00111 DNA replication licen 98.9 1.6E-08 3.5E-13 117.6 16.0 138 202-354 490-653 (915)
204 PF00158 Sigma54_activat: Sigm 98.9 5.8E-09 1.3E-13 100.4 10.0 118 203-336 21-154 (168)
205 TIGR02915 PEP_resp_reg putativ 98.8 2.1E-08 4.6E-13 110.6 13.2 211 169-408 137-382 (445)
206 KOG2680 DNA helicase TIP49, TB 98.8 1.1E-07 2.3E-12 97.1 16.4 89 323-414 339-428 (454)
207 KOG0745 Putative ATP-dependent 98.8 1.4E-08 3E-13 108.0 10.2 96 205-300 227-333 (564)
208 COG0606 Predicted ATPase with 98.8 2.2E-08 4.7E-13 108.4 11.5 218 167-413 175-483 (490)
209 PRK07952 DNA replication prote 98.8 3.3E-08 7.1E-13 100.7 12.1 132 165-323 66-205 (244)
210 PRK13765 ATP-dependent proteas 98.8 4.1E-08 8.8E-13 112.2 14.1 102 311-414 275-399 (637)
211 KOG0990 Replication factor C, 98.8 5.3E-08 1.2E-12 100.4 13.5 192 162-396 32-238 (360)
212 PRK12377 putative replication 98.8 4.1E-08 8.9E-13 100.2 11.8 132 165-323 68-206 (248)
213 KOG1514 Origin recognition com 98.8 1.5E-07 3.3E-12 105.3 16.5 192 206-416 424-656 (767)
214 PRK06964 DNA polymerase III su 98.8 7.4E-08 1.6E-12 102.6 13.5 132 202-357 19-203 (342)
215 PRK10923 glnG nitrogen regulat 98.7 9E-08 2E-12 106.4 13.4 212 169-409 136-382 (469)
216 PRK13406 bchD magnesium chelat 98.7 2E-07 4.4E-12 105.8 16.2 200 205-420 26-255 (584)
217 PRK11361 acetoacetate metaboli 98.7 1.1E-07 2.3E-12 105.3 13.6 187 204-409 166-387 (457)
218 PRK08181 transposase; Validate 98.7 5.6E-08 1.2E-12 100.4 10.3 86 204-296 106-196 (269)
219 PRK08939 primosomal protein Dn 98.7 5.6E-08 1.2E-12 102.3 10.5 101 167-274 123-229 (306)
220 PF13177 DNA_pol3_delta2: DNA 98.7 6.2E-08 1.3E-12 92.7 9.8 134 175-345 1-161 (162)
221 PRK08769 DNA polymerase III su 98.7 4.1E-07 9E-12 96.1 16.9 151 202-381 24-203 (319)
222 PRK06526 transposase; Provisio 98.7 3.8E-08 8.3E-13 100.9 7.5 85 204-295 98-187 (254)
223 PF03215 Rad17: Rad17 cell cyc 98.7 3.2E-07 7E-12 102.8 15.3 204 163-396 11-269 (519)
224 PRK06871 DNA polymerase III su 98.7 6.8E-07 1.5E-11 94.7 16.6 129 202-357 22-178 (325)
225 PRK07993 DNA polymerase III su 98.6 6.9E-07 1.5E-11 95.2 15.9 148 202-379 22-197 (334)
226 KOG1051 Chaperone HSP104 and r 98.6 1.6E-07 3.4E-12 109.4 11.7 138 172-323 563-711 (898)
227 PRK06835 DNA replication prote 98.6 1.6E-07 3.5E-12 99.7 10.0 69 204-274 183-258 (329)
228 TIGR01818 ntrC nitrogen regula 98.6 3.5E-07 7.7E-12 101.4 13.0 190 204-412 157-381 (463)
229 PRK15115 response regulator Gl 98.6 8.1E-07 1.8E-11 98.1 15.4 189 204-411 157-380 (444)
230 PF13173 AAA_14: AAA domain 98.6 5.7E-07 1.2E-11 82.4 11.8 69 205-274 3-73 (128)
231 COG1484 DnaC DNA replication p 98.6 2.8E-07 6E-12 94.6 10.5 98 167-274 75-179 (254)
232 PRK06921 hypothetical protein; 98.6 4.9E-07 1.1E-11 93.4 12.3 69 203-273 116-188 (266)
233 PRK06090 DNA polymerase III su 98.6 1.3E-06 2.7E-11 92.4 15.4 129 202-356 23-178 (319)
234 PF01637 Arch_ATPase: Archaeal 98.6 4.5E-07 9.8E-12 89.9 11.4 161 203-379 19-227 (234)
235 PRK08699 DNA polymerase III su 98.5 4.7E-07 1E-11 96.1 11.7 131 202-356 19-183 (325)
236 KOG2227 Pre-initiation complex 98.5 2.6E-06 5.6E-11 92.0 17.1 200 172-398 151-382 (529)
237 PRK09183 transposase/IS protei 98.5 3.6E-07 7.7E-12 94.1 9.3 71 203-274 101-176 (259)
238 PF01695 IstB_IS21: IstB-like 98.5 1.3E-07 2.9E-12 91.9 5.3 70 203-274 46-120 (178)
239 PRK10365 transcriptional regul 98.5 1.5E-06 3.2E-11 95.8 13.6 186 204-410 162-384 (441)
240 KOG2035 Replication factor C, 98.5 3.4E-06 7.3E-11 85.7 14.2 179 164-378 6-220 (351)
241 PF14532 Sigma54_activ_2: Sigm 98.4 6E-07 1.3E-11 83.3 7.2 59 204-275 21-82 (138)
242 PF13401 AAA_22: AAA domain; P 98.4 1.9E-06 4.2E-11 78.2 9.7 85 204-297 4-113 (131)
243 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.6E-06 3.5E-11 93.3 10.1 139 201-372 59-207 (362)
244 KOG1970 Checkpoint RAD17-RFC c 98.3 1.1E-05 2.5E-10 88.5 16.2 206 164-395 75-320 (634)
245 PF12775 AAA_7: P-loop contain 98.3 1.9E-06 4E-11 89.4 9.8 142 204-359 33-194 (272)
246 PF12774 AAA_6: Hydrolytic ATP 98.3 5E-06 1.1E-10 84.1 12.1 136 204-355 32-177 (231)
247 COG3283 TyrR Transcriptional r 98.3 5.8E-06 1.3E-10 86.5 12.0 207 165-395 198-432 (511)
248 cd01120 RecA-like_NTPases RecA 98.3 1E-05 2.2E-10 75.3 11.8 70 207-276 2-99 (165)
249 PF05729 NACHT: NACHT domain 98.2 1.6E-05 3.4E-10 74.7 12.5 138 206-360 2-165 (166)
250 PF00931 NB-ARC: NB-ARC domain 98.2 1.9E-05 4.1E-10 81.6 13.9 171 181-387 3-202 (287)
251 KOG0480 DNA replication licens 98.2 4.2E-06 9.2E-11 92.9 8.4 231 168-414 342-642 (764)
252 COG1241 MCM2 Predicted ATPase 98.2 5.1E-06 1.1E-10 95.0 9.3 197 203-415 318-592 (682)
253 TIGR02237 recomb_radB DNA repa 98.1 1.5E-05 3.2E-10 78.9 10.9 77 200-276 8-111 (209)
254 PF00493 MCM: MCM2/3/5 family 98.1 1.5E-06 3.3E-11 92.5 4.1 196 203-414 56-325 (331)
255 KOG0478 DNA replication licens 98.1 6.6E-05 1.4E-09 84.3 16.4 140 201-355 459-623 (804)
256 COG3267 ExeA Type II secretory 98.1 0.00017 3.8E-09 72.9 17.5 182 206-408 53-266 (269)
257 PLN03210 Resistant to P. syrin 98.1 3E-05 6.6E-10 95.6 14.2 179 165-382 178-391 (1153)
258 COG3284 AcoR Transcriptional a 98.1 4.5E-06 9.8E-11 93.3 6.0 187 204-411 336-553 (606)
259 COG1485 Predicted ATPase [Gene 98.1 1.7E-05 3.6E-10 83.5 9.4 162 176-370 30-208 (367)
260 cd01124 KaiC KaiC is a circadi 98.0 5.1E-05 1.1E-09 73.3 11.5 89 207-298 2-128 (187)
261 PF00910 RNA_helicase: RNA hel 98.0 9.6E-06 2.1E-10 72.1 5.2 103 207-322 1-107 (107)
262 PRK05917 DNA polymerase III su 98.0 6.9E-05 1.5E-09 78.1 12.0 120 202-345 17-154 (290)
263 KOG1968 Replication factor C, 98.0 2.8E-05 6E-10 91.6 9.9 205 164-394 313-535 (871)
264 cd01121 Sms Sms (bacterial rad 97.9 4.5E-05 9.7E-10 82.5 10.2 78 200-277 78-173 (372)
265 PRK11823 DNA repair protein Ra 97.9 4.2E-05 9.2E-10 84.8 10.2 77 200-276 76-170 (446)
266 KOG2383 Predicted ATPase [Gene 97.9 3.7E-05 8.1E-10 81.8 9.0 159 202-393 112-298 (467)
267 PRK07276 DNA polymerase III su 97.9 0.00047 1E-08 72.0 16.7 127 202-355 22-172 (290)
268 PRK05818 DNA polymerase III su 97.9 0.00039 8.4E-09 71.3 15.4 120 202-345 5-147 (261)
269 PF13191 AAA_16: AAA ATPase do 97.9 2.3E-05 5E-10 75.2 6.1 39 202-240 22-63 (185)
270 PRK09361 radB DNA repair and r 97.8 0.00011 2.4E-09 73.6 10.6 76 200-276 19-121 (225)
271 PRK07132 DNA polymerase III su 97.8 0.00031 6.7E-09 73.8 13.0 127 202-356 16-160 (299)
272 TIGR02688 conserved hypothetic 97.8 0.00028 6.1E-09 76.7 12.8 114 181-322 197-314 (449)
273 PF13207 AAA_17: AAA domain; P 97.7 2.2E-05 4.7E-10 70.5 3.5 31 207-237 2-32 (121)
274 cd01394 radB RadB. The archaea 97.7 0.0003 6.5E-09 70.1 12.1 39 200-238 15-56 (218)
275 PHA00729 NTP-binding motif con 97.7 6.1E-05 1.3E-09 75.7 6.9 26 205-230 18-43 (226)
276 TIGR02012 tigrfam_recA protein 97.7 0.00017 3.6E-09 76.4 10.4 78 200-277 51-148 (321)
277 KOG0482 DNA replication licens 97.7 7.4E-05 1.6E-09 81.3 7.6 228 172-416 343-639 (721)
278 PRK08533 flagellar accessory p 97.7 0.00049 1.1E-08 69.7 12.7 76 200-275 20-130 (230)
279 PF05707 Zot: Zonular occluden 97.7 5.2E-05 1.1E-09 74.6 5.5 122 207-345 3-146 (193)
280 COG5245 DYN1 Dynein, heavy cha 97.7 0.00028 6.2E-09 84.5 12.0 186 201-395 1491-1716(3164)
281 PRK06067 flagellar accessory p 97.6 0.00028 6.1E-09 71.3 10.4 40 200-239 21-63 (234)
282 TIGR01618 phage_P_loop phage n 97.6 0.00019 4.1E-09 72.0 8.9 72 203-276 11-95 (220)
283 PRK00131 aroK shikimate kinase 97.6 5.3E-05 1.2E-09 72.1 4.4 33 203-235 3-35 (175)
284 PF07693 KAP_NTPase: KAP famil 97.6 0.0023 5E-08 67.4 17.0 28 202-229 18-45 (325)
285 TIGR00416 sms DNA repair prote 97.6 0.00027 6E-09 78.5 10.3 77 200-276 90-184 (454)
286 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00046 9.9E-09 69.4 10.7 100 200-299 15-155 (235)
287 cd01393 recA_like RecA is a b 97.6 0.00048 1E-08 68.8 10.7 101 200-300 15-155 (226)
288 PRK08118 topology modulation p 97.6 0.00016 3.4E-09 69.6 6.7 33 206-238 3-35 (167)
289 PF06745 KaiC: KaiC; InterPro 97.6 0.00063 1.4E-08 68.2 11.4 98 199-298 14-149 (226)
290 COG1373 Predicted ATPase (AAA+ 97.6 0.005 1.1E-07 67.4 19.1 123 206-352 39-161 (398)
291 COG5271 MDN1 AAA ATPase contai 97.5 0.00027 5.8E-09 85.3 9.3 146 203-359 1542-1704(4600)
292 cd00983 recA RecA is a bacter 97.5 0.00051 1.1E-08 72.8 10.6 78 200-277 51-148 (325)
293 PF05272 VirE: Virulence-assoc 97.5 0.00079 1.7E-08 66.6 11.4 120 200-344 48-169 (198)
294 KOG2170 ATPase of the AAA+ sup 97.5 0.00065 1.4E-08 70.2 10.6 98 172-275 83-191 (344)
295 KOG0477 DNA replication licens 97.5 0.00043 9.2E-09 77.2 9.3 34 201-234 479-512 (854)
296 cd03283 ABC_MutS-like MutS-lik 97.4 0.001 2.2E-08 65.8 10.8 68 205-272 26-115 (199)
297 PRK05800 cobU adenosylcobinami 97.4 0.0015 3.1E-08 63.2 11.2 90 206-298 3-114 (170)
298 PRK07261 topology modulation p 97.4 0.00034 7.3E-09 67.5 6.7 34 207-240 3-36 (171)
299 KOG1051 Chaperone HSP104 and r 97.4 0.0021 4.6E-08 75.7 14.0 197 170-395 185-410 (898)
300 TIGR02858 spore_III_AA stage I 97.4 0.00077 1.7E-08 69.9 9.2 67 205-271 112-203 (270)
301 PF13671 AAA_33: AAA domain; P 97.3 0.00039 8.4E-09 64.1 6.2 31 207-239 2-32 (143)
302 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0019 4.1E-08 65.6 11.8 40 200-239 17-59 (237)
303 COG1618 Predicted nucleotide k 97.3 0.0012 2.6E-08 62.6 9.2 26 203-228 4-29 (179)
304 PRK13947 shikimate kinase; Pro 97.3 0.0002 4.4E-09 68.4 4.2 31 206-236 3-33 (171)
305 PF14516 AAA_35: AAA-like doma 97.3 0.028 6E-07 60.1 20.8 172 204-389 31-241 (331)
306 COG4650 RtcR Sigma54-dependent 97.3 0.00045 9.6E-09 70.9 6.6 75 201-275 205-295 (531)
307 KOG2543 Origin recognition com 97.3 0.0051 1.1E-07 65.6 14.5 137 202-357 28-192 (438)
308 PRK03839 putative kinase; Prov 97.3 0.00019 4.2E-09 69.3 3.8 31 206-236 2-32 (180)
309 PRK09354 recA recombinase A; P 97.3 0.0013 2.9E-08 70.2 10.3 78 200-277 56-153 (349)
310 cd00464 SK Shikimate kinase (S 97.3 0.00023 5E-09 66.4 3.9 31 206-236 1-31 (154)
311 PTZ00202 tuzin; Provisional 97.3 0.025 5.4E-07 62.1 19.6 64 167-239 258-321 (550)
312 PF06309 Torsin: Torsin; Inte 97.3 0.00041 8.9E-09 63.3 5.2 52 171-228 25-77 (127)
313 PRK00625 shikimate kinase; Pro 97.3 0.00025 5.5E-09 68.6 4.1 31 206-236 2-32 (173)
314 cd00984 DnaB_C DnaB helicase C 97.3 0.0017 3.6E-08 65.7 10.3 40 200-239 9-52 (242)
315 KOG2228 Origin recognition com 97.2 0.0019 4.1E-08 67.8 10.5 136 204-358 49-219 (408)
316 KOG3347 Predicted nucleotide k 97.2 0.00023 5E-09 66.4 3.2 32 205-236 8-39 (176)
317 PRK06762 hypothetical protein; 97.2 0.00077 1.7E-08 64.1 6.9 38 204-241 2-39 (166)
318 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00029 6.3E-09 68.1 3.9 33 207-241 2-34 (183)
319 PRK04296 thymidine kinase; Pro 97.2 0.0017 3.8E-08 63.6 9.4 69 206-274 4-90 (190)
320 PRK15455 PrkA family serine pr 97.2 0.00035 7.5E-09 78.5 4.9 64 168-237 73-137 (644)
321 PRK05973 replicative DNA helic 97.2 0.0036 7.8E-08 63.6 11.7 40 200-239 60-102 (237)
322 cd01122 GP4d_helicase GP4d_hel 97.2 0.0021 4.5E-08 66.2 10.2 39 200-238 26-68 (271)
323 cd01128 rho_factor Transcripti 97.2 0.0015 3.2E-08 67.0 8.9 27 204-230 16-42 (249)
324 PLN02200 adenylate kinase fami 97.2 0.00047 1E-08 70.0 5.2 40 201-242 40-79 (234)
325 PRK13949 shikimate kinase; Pro 97.2 0.00034 7.4E-09 67.4 4.0 32 205-236 2-33 (169)
326 PHA02624 large T antigen; Prov 97.2 0.00083 1.8E-08 75.8 7.5 130 200-344 427-561 (647)
327 PHA02774 E1; Provisional 97.2 0.0025 5.4E-08 71.8 11.2 35 202-236 432-467 (613)
328 PRK14532 adenylate kinase; Pro 97.2 0.00035 7.5E-09 68.0 4.0 36 206-243 2-37 (188)
329 cd01131 PilT Pilus retraction 97.2 0.00061 1.3E-08 67.3 5.8 66 206-271 3-83 (198)
330 COG4619 ABC-type uncharacteriz 97.2 0.0022 4.8E-08 61.3 9.1 25 202-226 27-51 (223)
331 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.004 8.6E-08 64.2 11.9 39 200-238 32-73 (259)
332 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0043 9.4E-08 62.1 11.9 98 200-298 12-142 (224)
333 PF00437 T2SE: Type II/IV secr 97.2 0.00057 1.2E-08 70.5 5.7 98 165-272 98-207 (270)
334 PRK14531 adenylate kinase; Pro 97.1 0.00042 9.2E-09 67.4 4.4 35 205-241 3-37 (183)
335 cd03216 ABC_Carb_Monos_I This 97.1 0.0018 3.9E-08 61.8 8.6 89 202-296 24-128 (163)
336 PRK14722 flhF flagellar biosyn 97.1 0.0018 4E-08 69.9 9.6 108 203-329 136-265 (374)
337 cd02020 CMPK Cytidine monophos 97.1 0.00041 8.8E-09 64.1 3.8 30 207-236 2-31 (147)
338 COG0703 AroK Shikimate kinase 97.1 0.0008 1.7E-08 64.7 5.8 32 205-236 3-34 (172)
339 cd00544 CobU Adenosylcobinamid 97.1 0.0044 9.6E-08 59.8 10.9 90 207-298 2-114 (169)
340 cd00227 CPT Chloramphenicol (C 97.1 0.00043 9.4E-09 66.7 3.8 36 205-240 3-38 (175)
341 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0021 4.6E-08 60.1 8.4 88 202-296 24-116 (144)
342 PRK06217 hypothetical protein; 97.1 0.00047 1E-08 67.0 4.0 31 206-236 3-33 (183)
343 PF13604 AAA_30: AAA domain; P 97.1 0.00066 1.4E-08 67.0 5.0 84 205-298 19-119 (196)
344 cd01428 ADK Adenylate kinase ( 97.1 0.00047 1E-08 67.0 3.8 29 207-235 2-30 (194)
345 cd03238 ABC_UvrA The excision 97.1 0.0024 5.2E-08 62.0 8.7 117 202-344 19-163 (176)
346 PRK04841 transcriptional regul 97.1 0.0089 1.9E-07 71.8 15.5 151 204-380 32-219 (903)
347 cd01130 VirB11-like_ATPase Typ 97.1 0.0012 2.7E-08 64.4 6.7 70 203-272 24-110 (186)
348 PRK09376 rho transcription ter 97.1 0.0013 2.8E-08 71.1 7.3 23 207-229 172-194 (416)
349 PRK13833 conjugal transfer pro 97.0 0.0011 2.4E-08 70.4 6.7 69 204-272 144-225 (323)
350 PRK04301 radA DNA repair and r 97.0 0.0033 7.1E-08 66.7 10.3 40 200-239 98-146 (317)
351 TIGR02782 TrbB_P P-type conjug 97.0 0.0011 2.4E-08 69.7 6.6 69 204-272 132-214 (299)
352 PTZ00088 adenylate kinase 1; P 97.0 0.00067 1.4E-08 68.7 4.6 33 203-235 5-37 (229)
353 cd02021 GntK Gluconate kinase 97.0 0.00053 1.1E-08 64.1 3.7 33 207-241 2-34 (150)
354 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0048 1E-07 61.7 10.7 23 204-226 29-51 (213)
355 TIGR02238 recomb_DMC1 meiotic 97.0 0.0034 7.4E-08 66.5 10.1 100 200-299 92-231 (313)
356 PRK06547 hypothetical protein; 97.0 0.001 2.2E-08 64.3 5.7 34 203-236 14-47 (172)
357 PRK13948 shikimate kinase; Pro 97.0 0.00074 1.6E-08 65.9 4.6 35 202-236 8-42 (182)
358 PRK06696 uridine kinase; Valid 97.0 0.0012 2.5E-08 66.4 6.2 40 203-242 21-63 (223)
359 cd03247 ABCC_cytochrome_bd The 97.0 0.0055 1.2E-07 59.2 10.6 89 202-296 26-144 (178)
360 PRK14530 adenylate kinase; Pro 97.0 0.00066 1.4E-08 67.7 4.1 30 206-235 5-34 (215)
361 TIGR02236 recomb_radA DNA repa 97.0 0.0042 9.1E-08 65.6 10.4 40 200-239 91-139 (310)
362 cd03228 ABCC_MRP_Like The MRP 97.0 0.0069 1.5E-07 58.1 11.0 27 202-228 26-52 (171)
363 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0035 7.7E-08 59.1 8.8 88 203-296 24-126 (157)
364 PRK04328 hypothetical protein; 97.0 0.0071 1.5E-07 61.9 11.6 39 200-238 19-60 (249)
365 TIGR01313 therm_gnt_kin carboh 97.0 0.00058 1.3E-08 64.8 3.3 32 207-240 1-32 (163)
366 KOG0481 DNA replication licens 96.9 0.0091 2E-07 65.6 12.5 28 203-230 363-390 (729)
367 PRK09519 recA DNA recombinatio 96.9 0.0045 9.7E-08 72.5 11.0 77 200-276 56-152 (790)
368 PRK13764 ATPase; Provisional 96.9 0.0013 2.8E-08 75.1 6.5 70 203-272 256-334 (602)
369 COG1102 Cmk Cytidylate kinase 96.9 0.00069 1.5E-08 64.2 3.4 28 207-234 3-30 (179)
370 PRK12339 2-phosphoglycerate ki 96.9 0.022 4.8E-07 56.4 14.3 29 204-232 3-31 (197)
371 PF10236 DAP3: Mitochondrial r 96.9 0.04 8.6E-07 58.4 17.2 127 251-386 142-308 (309)
372 PRK13894 conjugal transfer ATP 96.9 0.0014 3E-08 69.7 6.1 69 204-272 148-229 (319)
373 PRK03731 aroL shikimate kinase 96.9 0.00087 1.9E-08 64.1 4.3 31 205-235 3-33 (171)
374 PRK13946 shikimate kinase; Pro 96.9 0.00079 1.7E-08 65.6 4.0 34 203-236 9-42 (184)
375 PRK08233 hypothetical protein; 96.9 0.004 8.7E-08 59.7 8.6 35 205-239 4-39 (182)
376 PRK14528 adenylate kinase; Pro 96.9 0.0009 2E-08 65.4 4.1 31 205-235 2-32 (186)
377 PRK05057 aroK shikimate kinase 96.9 0.00098 2.1E-08 64.3 4.3 34 204-237 4-37 (172)
378 PRK13695 putative NTPase; Prov 96.9 0.01 2.2E-07 57.0 11.4 23 206-228 2-24 (174)
379 cd03223 ABCD_peroxisomal_ALDP 96.9 0.013 2.7E-07 56.1 11.9 89 202-296 25-137 (166)
380 PRK08154 anaerobic benzoate ca 96.9 0.0012 2.6E-08 69.8 5.2 35 201-235 130-164 (309)
381 PTZ00035 Rad51 protein; Provis 96.9 0.0065 1.4E-07 65.1 10.6 100 200-299 114-253 (337)
382 PLN03187 meiotic recombination 96.9 0.0053 1.1E-07 65.8 9.9 100 200-299 122-261 (344)
383 PF06480 FtsH_ext: FtsH Extrac 96.9 0.0011 2.3E-08 58.1 3.9 67 35-101 27-109 (110)
384 cd02027 APSK Adenosine 5'-phos 96.9 0.0036 7.8E-08 58.9 7.7 34 207-240 2-38 (149)
385 TIGR01420 pilT_fam pilus retra 96.8 0.0024 5.1E-08 68.6 7.3 68 205-272 123-205 (343)
386 cd00046 DEXDc DEAD-like helica 96.8 0.0022 4.8E-08 57.1 6.0 24 205-228 1-24 (144)
387 PF06414 Zeta_toxin: Zeta toxi 96.8 0.0035 7.7E-08 61.8 7.9 42 202-243 13-55 (199)
388 PRK14527 adenylate kinase; Pro 96.8 0.001 2.2E-08 65.0 4.0 33 203-235 5-37 (191)
389 TIGR01351 adk adenylate kinase 96.8 0.001 2.2E-08 66.2 3.8 29 207-235 2-30 (210)
390 COG1116 TauB ABC-type nitrate/ 96.8 0.0099 2.1E-07 60.3 10.8 22 206-227 31-52 (248)
391 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.4E-08 63.9 4.0 29 206-234 5-33 (188)
392 COG0563 Adk Adenylate kinase a 96.8 0.0011 2.5E-08 64.4 4.0 34 206-241 2-35 (178)
393 PRK00771 signal recognition pa 96.8 0.0094 2E-07 65.9 11.6 39 202-240 93-134 (437)
394 TIGR02655 circ_KaiC circadian 96.8 0.0072 1.6E-07 67.9 10.9 77 200-276 259-367 (484)
395 PRK02496 adk adenylate kinase; 96.8 0.001 2.2E-08 64.5 3.7 30 206-235 3-32 (184)
396 COG3854 SpoIIIAA ncharacterize 96.8 0.0019 4.1E-08 64.6 5.4 71 203-273 136-229 (308)
397 PF00448 SRP54: SRP54-type pro 96.8 0.013 2.8E-07 57.9 11.3 35 204-238 1-38 (196)
398 TIGR00767 rho transcription te 96.8 0.0046 9.9E-08 67.2 8.6 25 205-229 169-193 (415)
399 TIGR02655 circ_KaiC circadian 96.8 0.0057 1.2E-07 68.7 9.8 40 200-239 17-60 (484)
400 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0064 1.4E-07 59.1 8.7 71 203-273 24-100 (177)
401 PRK14974 cell division protein 96.7 0.014 3E-07 62.4 12.1 36 203-238 139-177 (336)
402 PRK00279 adk adenylate kinase; 96.7 0.0012 2.7E-08 65.7 3.9 33 207-241 3-35 (215)
403 PRK04040 adenylate kinase; Pro 96.7 0.0014 3E-08 64.3 4.1 30 204-233 2-33 (188)
404 cd03246 ABCC_Protease_Secretio 96.7 0.011 2.3E-07 56.9 10.2 88 203-296 27-142 (173)
405 PRK13900 type IV secretion sys 96.7 0.0023 5E-08 68.4 6.0 70 203-272 159-245 (332)
406 PF13245 AAA_19: Part of AAA d 96.7 0.0022 4.8E-08 53.5 4.6 23 206-228 12-35 (76)
407 cd03243 ABC_MutS_homologs The 96.7 0.0074 1.6E-07 59.6 9.2 21 205-225 30-50 (202)
408 cd02019 NK Nucleoside/nucleoti 96.7 0.0047 1E-07 50.3 6.5 31 207-237 2-33 (69)
409 TIGR01613 primase_Cterm phage/ 96.7 0.0049 1.1E-07 64.9 8.3 149 172-343 49-202 (304)
410 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.003 6.4E-08 63.4 6.3 71 200-271 16-89 (229)
411 COG1936 Predicted nucleotide k 96.7 0.0011 2.4E-08 63.5 3.0 30 206-236 2-31 (180)
412 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0085 1.8E-07 57.6 9.2 88 203-296 25-141 (173)
413 PRK12723 flagellar biosynthesi 96.7 0.013 2.9E-07 63.8 11.7 26 203-228 173-198 (388)
414 PLN03186 DNA repair protein RA 96.7 0.008 1.7E-07 64.5 9.4 101 200-300 119-259 (342)
415 cd01129 PulE-GspE PulE/GspE Th 96.6 0.0044 9.5E-08 64.1 7.2 67 206-272 82-159 (264)
416 PRK01184 hypothetical protein; 96.6 0.0016 3.4E-08 63.1 3.7 29 206-235 3-31 (184)
417 PLN02674 adenylate kinase 96.6 0.0032 6.9E-08 64.3 6.0 39 202-242 29-67 (244)
418 cd03227 ABC_Class2 ABC-type Cl 96.6 0.0077 1.7E-07 57.4 8.3 22 204-225 21-42 (162)
419 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0033 7.1E-08 58.3 5.3 29 203-231 21-49 (133)
420 TIGR02239 recomb_RAD51 DNA rep 96.6 0.0092 2E-07 63.4 9.5 100 200-299 92-231 (316)
421 PF01745 IPT: Isopentenyl tran 96.6 0.0031 6.6E-08 62.6 5.4 87 206-301 3-89 (233)
422 PRK09302 circadian clock prote 96.6 0.016 3.4E-07 65.5 12.0 40 200-239 27-70 (509)
423 COG2804 PulE Type II secretory 96.6 0.0047 1E-07 68.3 7.3 70 203-272 256-337 (500)
424 PF13238 AAA_18: AAA domain; P 96.6 0.0016 3.4E-08 58.4 3.1 22 207-228 1-22 (129)
425 COG1066 Sms Predicted ATP-depe 96.6 0.01 2.2E-07 64.0 9.6 77 202-278 91-184 (456)
426 PF00406 ADK: Adenylate kinase 96.6 0.0013 2.9E-08 61.7 2.6 33 209-243 1-33 (151)
427 smart00534 MUTSac ATPase domai 96.6 0.015 3.3E-07 56.6 10.1 19 207-225 2-20 (185)
428 TIGR01526 nadR_NMN_Atrans nico 96.6 0.0043 9.3E-08 66.1 6.7 37 204-240 162-198 (325)
429 PF12780 AAA_8: P-loop contain 96.6 0.011 2.4E-07 61.3 9.4 176 172-361 9-213 (268)
430 COG2274 SunT ABC-type bacterio 96.6 0.013 2.7E-07 68.6 10.9 28 200-227 493-522 (709)
431 TIGR02525 plasmid_TraJ plasmid 96.5 0.0047 1E-07 66.9 6.9 67 206-272 151-235 (372)
432 COG0467 RAD55 RecA-superfamily 96.5 0.0041 9E-08 63.9 6.2 45 200-244 19-66 (260)
433 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0056 1.2E-07 62.5 7.1 34 207-240 2-38 (249)
434 PRK04182 cytidylate kinase; Pr 96.5 0.0022 4.8E-08 61.3 3.9 29 206-234 2-30 (180)
435 TIGR02788 VirB11 P-type DNA tr 96.5 0.0034 7.3E-08 66.4 5.6 72 201-272 141-228 (308)
436 PRK13851 type IV secretion sys 96.5 0.0029 6.3E-08 67.8 5.0 71 202-272 160-246 (344)
437 cd01125 repA Hexameric Replica 96.5 0.045 9.7E-07 55.5 13.5 20 207-226 4-23 (239)
438 PF04665 Pox_A32: Poxvirus A32 96.5 0.061 1.3E-06 54.8 14.2 132 202-357 11-169 (241)
439 PRK06581 DNA polymerase III su 96.5 0.068 1.5E-06 54.3 14.3 136 202-361 13-164 (263)
440 PF13521 AAA_28: AAA domain; P 96.5 0.002 4.4E-08 61.2 3.3 26 207-233 2-27 (163)
441 COG5271 MDN1 AAA ATPase contai 96.5 0.0048 1E-07 75.2 6.9 142 206-358 890-1047(4600)
442 PHA02530 pseT polynucleotide k 96.5 0.0024 5.3E-08 66.7 4.2 36 204-240 2-37 (300)
443 PF13086 AAA_11: AAA domain; P 96.5 0.0038 8.3E-08 61.6 5.3 22 207-228 20-41 (236)
444 PRK12724 flagellar biosynthesi 96.5 0.027 5.9E-07 61.7 12.2 37 203-239 222-262 (432)
445 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.02 4.3E-07 56.5 10.2 21 205-225 29-49 (200)
446 cd03214 ABC_Iron-Siderophores_ 96.5 0.019 4E-07 55.6 9.8 27 202-228 23-49 (180)
447 PLN02199 shikimate kinase 96.5 0.0046 1E-07 64.6 5.8 46 179-236 89-134 (303)
448 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0028 6E-08 60.2 3.9 29 207-235 3-31 (171)
449 cd03115 SRP The signal recogni 96.4 0.01 2.2E-07 56.8 7.8 35 206-240 2-39 (173)
450 PF13481 AAA_25: AAA domain; P 96.4 0.014 3E-07 56.7 8.8 72 206-277 34-156 (193)
451 PRK11889 flhF flagellar biosyn 96.4 0.028 6E-07 61.1 11.7 37 203-239 240-279 (436)
452 PRK14526 adenylate kinase; Pro 96.4 0.0028 6.1E-08 63.4 3.9 33 207-241 3-35 (211)
453 COG4178 ABC-type uncharacteriz 96.4 0.016 3.4E-07 65.9 10.1 27 200-226 415-441 (604)
454 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0065 1.4E-07 64.7 6.6 82 169-257 58-143 (358)
455 COG2874 FlaH Predicted ATPases 96.4 0.02 4.2E-07 56.9 9.4 116 200-332 24-176 (235)
456 PF09848 DUF2075: Uncharacteri 96.4 0.01 2.2E-07 63.9 8.2 23 206-228 3-25 (352)
457 PF13479 AAA_24: AAA domain 96.4 0.0063 1.4E-07 60.8 6.2 67 204-274 3-80 (213)
458 PRK10867 signal recognition pa 96.4 0.016 3.5E-07 63.9 9.9 71 202-272 98-193 (433)
459 PF01583 APS_kinase: Adenylyls 96.4 0.0087 1.9E-07 56.9 6.7 40 204-243 2-44 (156)
460 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.046 9.9E-07 54.4 12.0 23 204-226 29-51 (204)
461 PF05970 PIF1: PIF1-like helic 96.3 0.0099 2.1E-07 64.3 7.8 43 177-228 4-46 (364)
462 cd03213 ABCG_EPDR ABCG transpo 96.3 0.022 4.7E-07 55.9 9.5 27 202-228 33-59 (194)
463 COG2805 PilT Tfp pilus assembl 96.3 0.0085 1.8E-07 62.2 6.7 70 203-272 123-208 (353)
464 PRK12608 transcription termina 96.3 0.013 2.9E-07 63.1 8.4 23 206-228 135-157 (380)
465 KOG0479 DNA replication licens 96.3 0.03 6.4E-07 62.6 11.1 156 172-342 302-481 (818)
466 TIGR03499 FlhF flagellar biosy 96.3 0.015 3.3E-07 60.7 8.7 38 203-240 193-235 (282)
467 cd03229 ABC_Class3 This class 96.2 0.022 4.9E-07 54.9 9.1 26 203-228 25-50 (178)
468 TIGR01425 SRP54_euk signal rec 96.2 0.023 5E-07 62.6 10.0 39 202-240 98-139 (429)
469 PRK05541 adenylylsulfate kinas 96.2 0.0048 1E-07 59.4 4.2 28 202-229 5-32 (176)
470 PLN02459 probable adenylate ki 96.2 0.0049 1.1E-07 63.4 4.5 35 205-241 30-64 (261)
471 TIGR00959 ffh signal recogniti 96.2 0.025 5.4E-07 62.5 10.3 71 202-272 97-192 (428)
472 PRK09302 circadian clock prote 96.2 0.038 8.3E-07 62.4 12.1 77 200-276 269-377 (509)
473 PRK08099 bifunctional DNA-bind 96.2 0.0095 2.1E-07 65.2 6.7 32 203-234 218-249 (399)
474 PRK11176 lipid transporter ATP 96.2 0.03 6.6E-07 64.1 11.1 28 201-228 366-393 (582)
475 PF02456 Adeno_IVa2: Adenoviru 96.1 0.008 1.7E-07 62.5 5.5 25 251-275 185-210 (369)
476 PRK10416 signal recognition pa 96.1 0.07 1.5E-06 56.8 12.9 37 202-238 112-151 (318)
477 TIGR00152 dephospho-CoA kinase 96.1 0.025 5.5E-07 55.1 8.8 34 207-242 2-35 (188)
478 TIGR00064 ftsY signal recognit 96.1 0.04 8.7E-07 57.3 10.7 38 202-239 70-110 (272)
479 PRK14529 adenylate kinase; Pro 96.1 0.0046 9.9E-08 62.4 3.5 29 206-234 2-30 (223)
480 PF00488 MutS_V: MutS domain V 96.1 0.049 1.1E-06 55.4 11.0 103 204-325 43-168 (235)
481 cd03232 ABC_PDR_domain2 The pl 96.1 0.018 4E-07 56.3 7.7 25 203-227 32-56 (192)
482 PRK11174 cysteine/glutathione 96.1 0.031 6.7E-07 64.2 10.7 28 201-228 373-400 (588)
483 PRK05480 uridine/cytidine kina 96.1 0.0081 1.8E-07 59.5 5.2 38 203-240 5-43 (209)
484 PRK13541 cytochrome c biogenes 96.1 0.055 1.2E-06 53.0 11.1 27 202-228 24-50 (195)
485 PRK10078 ribose 1,5-bisphospho 96.0 0.0057 1.2E-07 59.6 3.8 29 205-233 3-31 (186)
486 TIGR02524 dot_icm_DotB Dot/Icm 96.0 0.016 3.4E-07 62.6 7.6 68 205-272 135-222 (358)
487 PTZ00494 tuzin-like protein; P 96.0 0.93 2E-05 50.0 20.5 183 197-415 388-592 (664)
488 PRK12338 hypothetical protein; 96.0 0.0063 1.4E-07 64.3 4.3 30 203-232 3-32 (319)
489 PRK00889 adenylylsulfate kinas 96.0 0.0081 1.7E-07 57.7 4.7 36 203-238 3-41 (175)
490 cd03215 ABC_Carb_Monos_II This 96.0 0.014 3.1E-07 56.5 6.3 27 202-228 24-50 (182)
491 cd03287 ABC_MSH3_euk MutS3 hom 96.0 0.063 1.4E-06 54.2 11.0 105 203-326 30-157 (222)
492 TIGR02533 type_II_gspE general 96.0 0.014 3E-07 65.6 6.9 69 204-272 241-321 (486)
493 cd03239 ABC_SMC_head The struc 96.0 0.043 9.2E-07 53.3 9.5 22 206-227 24-45 (178)
494 TIGR03819 heli_sec_ATPase heli 95.9 0.016 3.4E-07 62.2 6.8 69 204-272 178-263 (340)
495 PF03266 NTPase_1: NTPase; In 95.9 0.0058 1.3E-07 58.9 3.2 26 206-231 1-29 (168)
496 cd02028 UMPK_like Uridine mono 95.9 0.0081 1.8E-07 58.4 4.2 36 207-242 2-40 (179)
497 PRK00091 miaA tRNA delta(2)-is 95.9 0.0084 1.8E-07 63.3 4.7 39 204-242 4-42 (307)
498 PF03796 DnaB_C: DnaB-like hel 95.9 0.02 4.3E-07 58.8 7.2 39 200-238 15-57 (259)
499 cd02022 DPCK Dephospho-coenzym 95.9 0.0077 1.7E-07 58.4 4.0 34 207-243 2-35 (179)
500 KOG3928 Mitochondrial ribosome 95.9 0.22 4.8E-06 53.9 15.0 49 339-388 405-457 (461)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-98 Score=823.73 Aligned_cols=531 Identities=31% Similarity=0.493 Sum_probs=462.6
Q ss_pred CCcChHHHHHhhccCCccEEEEEcCeeEEEEEEecCceeEEEEeC-CCChhHHHHHHhCCCeeeeecccchhhHHHHHHH
Q 007214 36 PKLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDI-PLDPYLFETIASSGAEVDLLQKRQIHYFLKVLIA 114 (612)
Q Consensus 36 ~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (612)
.+++|++|...+..++|++|.+..+...+.+..++|....+.+.. ..++.+...+..+++.+....+...+.|..++.+
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSKNTVYLPKGVNDPNLVSFLDSNNITESGFIPEDNSLLASLLST 102 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcceEEeecCCcccHHHHHHHHhcCCcccccCCCcccHHHHHHHH
Confidence 579999999999999999999998766777778877322223322 2478899999999987766555555677888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccchhhhccccccCCcccCCcccccceecCcccHHHHHHHHHHhCCch
Q 007214 115 LLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPM 194 (612)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~ 194 (612)
++|+++++.+++...+.....++ ....|++++++++.... ...+++|.||+|.|++|+++.++|+||++|.
T Consensus 103 ~lp~il~~~~~~~~~~r~~~~g~------g~~~~~~gkskak~~~~---~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ 173 (596)
T COG0465 103 WLPFILLIGLGWFFFRRQAQGGG------GGGAFSFGKSKAKLYLE---DQVKVTFADVAGVDEAKEELSELVDFLKNPK 173 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC------CCcccCCChHHHHHhcc---cccCcChhhhcCcHHHHHHHHHHHHHHhCch
Confidence 99988777544322211111111 11278888988876542 4788999999999999999999999999999
Q ss_pred hhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchh
Q 007214 195 QYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (612)
Q Consensus 195 ~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~ 273 (612)
+|..+|.+.|+|+||+||||||||+||||+|+|+++||+++|+++|.++ .+.+++++|++|.+|++++||||||||||+
T Consensus 174 ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 174 KYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred hhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 9999999999999999999999999999999999999999999999999 689999999999999999999999999999
Q ss_pred hhccC----CCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHH
Q 007214 274 IAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349 (612)
Q Consensus 274 l~~~~----~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~e 349 (612)
++..| .+++++++|++||||.+||++..+. +|+|+++||+|+.+|+||+||||||++|.++.||..+
T Consensus 254 vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~---------gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 254 VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE---------GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhhhccCCCCC---------ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 98776 3678999999999999999987544 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhccCcccCHHHH
Q 007214 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQ 429 (612)
Q Consensus 350 R~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~~~~~~~~~~~~~~ 429 (612)
|.+|++.|+++.+++.++|+..+|+.|+||+|+||.|++|+|++.|+|+++..|++.|+.+|+++++.+.
T Consensus 325 Re~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~---------- 394 (596)
T COG0465 325 REQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGP---------- 394 (596)
T ss_pred HHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred hhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEEeeccccccccccCCHHHHHHHHHHHhhhH
Q 007214 430 QKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGR 509 (612)
Q Consensus 430 ~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~~~lgGr 509 (612)
++....+++++++.+||||+|||+++..+|+.+++++.+|+|+|.++|+|+++|.+|.+ ++|+.+++++|+++||||
T Consensus 395 erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~---l~sk~~l~~~i~~~lgGR 471 (596)
T COG0465 395 ERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKY---LMSKEELLDRIDVLLGGR 471 (596)
T ss_pred CcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccc---cccHHHHHHHHHHHhCCc
Confidence 23344788899999999999999999999999999999999999999999999999754 569999999999999999
Q ss_pred HHHHHhcCCCcCCCchhhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCCCccccccCCCCCCCCCCccHHHH
Q 007214 510 CAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELS 589 (612)
Q Consensus 510 aAE~l~~g~~~t~ga~~Dl~~At~~a~~mv~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 589 (612)
||||++||.++||||+|||++||++|+.||++|| |++++|++.+...++ .|+++.+ ..++||++|+
T Consensus 472 aAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~G--------ms~~lG~v~~~~~~~-~flg~~~-----~~~~~Se~ta 537 (596)
T COG0465 472 AAEELIFGYEITTGASNDLEKATDLARAMVTEYG--------MSAKLGPVAYEQVEG-VFLGRYQ-----KAKNYSEETA 537 (596)
T ss_pred HhhhhhhcccccccchhhHHHHHHHHHHhhhhcC--------cchhhCceehhhccc-ccccccc-----cccCccHHHH
Confidence 9999999944999999999999999999999975 444555555544444 7787754 4578999999
Q ss_pred HHHHHHHHHHHHhhH--hhhhhhc
Q 007214 590 ELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 590 ~~id~ev~~li~~~~--~~~~l~e 611 (612)
+.||+||+++|++|| ++.||+|
T Consensus 538 ~~ID~evk~ii~~~y~~a~~il~~ 561 (596)
T COG0465 538 QEIDREVKDIIDEAYERAKELLNE 561 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 8888876
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-94 Score=760.23 Aligned_cols=403 Identities=32% Similarity=0.543 Sum_probs=370.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
...+++|+||-|.|++|++|+|+|+||++|.+|..+|.+.|+||||+||||||||+||||+|+|+|+||++.++++|.++
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCCh-hHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 007214 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP-RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (612)
Q Consensus 244 -~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~-~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (612)
+|.|++++|++|..|++++||||||||||+++++|...+. ...+++||||.+||||..+. +||||+|||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe---------GiIvigATN 447 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE---------GIIVIGATN 447 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC---------ceEEEeccC
Confidence 6999999999999999999999999999999988765443 67899999999999987655 599999999
Q ss_pred CCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCC
Q 007214 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401 (612)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~ 401 (612)
.|+.||+||.||||||++|.+|.||...|.+||+.|+.+..++.++|+.-||+.|+||+||||+|++|.|++.|+.++..
T Consensus 448 fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~ 527 (752)
T KOG0734|consen 448 FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE 527 (752)
T ss_pred ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEEe
Q 007214 402 KIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVF 481 (612)
Q Consensus 402 ~It~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~~ 481 (612)
.|++.|++.|-++++++. ++....++++.++.+||||+||||||....+..|.++.+|.|||.++|.|.+
T Consensus 528 ~VtM~~LE~akDrIlMG~----------ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~ 597 (752)
T KOG0734|consen 528 MVTMKHLEFAKDRILMGP----------ERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQ 597 (752)
T ss_pred cccHHHHhhhhhheeecc----------cccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceee
Confidence 999999999999998632 2335567778899999999999999999999999999999999999999999
Q ss_pred eccccccccccCCHHHHHHHHHHHhhhHHHHHHhcC-CCcCCCchhhHHHHHHHHHHHHhcccccccCcccccccccccC
Q 007214 482 YPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560 (612)
Q Consensus 482 ~p~e~~~~~~~~t~~~l~~~i~~~lgGraAE~l~~g-~~~t~ga~~Dl~~At~~a~~mv~~~~~~~~g~~~~~~~~g~~~ 560 (612)
+|..|.+. .|+.++++++.||||||+||||+|| |++|+||++||++||++|++||++| |||+++|++.
T Consensus 598 LPe~D~~~---~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~f--------GMSd~vG~v~ 666 (752)
T KOG0734|consen 598 LPEKDRYS---ITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKF--------GMSDKVGPVT 666 (752)
T ss_pred cCccchhh---HHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHc--------Ccccccccee
Confidence 99999754 3999999999999999999999999 5799999999999999999999997 4555666665
Q ss_pred CCCCCCCccccccCCCCCCCCCCccHHHHHHHHHHHHHHHHhhH--hhhhhh
Q 007214 561 RPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRVIIKKK--NCFILN 610 (612)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~li~~~~--~~~~l~ 610 (612)
+..+.. ...++++|+.+||.||++|+.++| ++.||+
T Consensus 667 ~~~~~~--------------~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~ 704 (752)
T KOG0734|consen 667 LSAEDN--------------SSSLSPRTQELIDAEIKRLLRDSYERAKSILK 704 (752)
T ss_pred eeccCC--------------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532221 235688999999999999999999 888875
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-89 Score=758.57 Aligned_cols=530 Identities=32% Similarity=0.480 Sum_probs=416.6
Q ss_pred CcChHHHHH-hhccCCccEEEEEcCeeEEEEEEecCc------eeEEEEeCCCChhHHHHHH----hCCCe-eeeecc--
Q 007214 37 KLPYTYFLE-KLDSSEVAAVVFTEDLKRLYVTMKEGF------PLEYVVDIPLDPYLFETIA----SSGAE-VDLLQK-- 102 (612)
Q Consensus 37 ~~~y~~f~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~----~~~~~-~~~~~~-- 102 (612)
+++|.+|+. +++.|.|..+.+.+.-....+.+..+. ...+...+-.-..+.+.|. .-++. +...|.
T Consensus 165 ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~v~~F~~kl~~a~~~l~~~~~~~~pV~~ 244 (774)
T KOG0731|consen 165 EITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRSVDNFERKLDEAQRNLGIDTVVRVPVTY 244 (774)
T ss_pred eeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecccchHHHHHHHHHHHhCCCceeEeeeEE
Confidence 799999965 599999999988763222233332211 1223333322233333333 22332 222222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhh-cccchhhhccccccCCcccCCcccccceecCcccHH
Q 007214 103 RQIHYFLKVLIALLPGILILSLIRETVMLLHITSSRLLYKKYN-QLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWD 181 (612)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~ 181 (612)
.....+...+..++|+++++..+....+.....+.+.-.+.++ ..|...++. +. ...+.+++++|+||+|.|++|+
T Consensus 245 ~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~-~k--~~~~~~t~V~FkDVAG~deAK~ 321 (774)
T KOG0731|consen 245 ISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSY-KK--FKNEGNTGVKFKDVAGVDEAKE 321 (774)
T ss_pred eecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccce-ee--eccCCCCCCccccccCcHHHHH
Confidence 1112344555666774433322211111000000000001111 223332322 11 2235677899999999999999
Q ss_pred HHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHHHHHHhh
Q 007214 182 LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARR 260 (612)
Q Consensus 182 ~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~ 260 (612)
+|+|+|+||+||+.|.++|+++|+|+||+||||||||+||||+|+|+|+||+++++++|.++ .+.++++++++|..|+.
T Consensus 322 El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~ 401 (774)
T KOG0731|consen 322 ELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARK 401 (774)
T ss_pred HHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999 57889999999999999
Q ss_pred cCCeEEEEccchhhhccCC-----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCc
Q 007214 261 NAPAFVFVDEIDAIAGRHA-----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGR 335 (612)
Q Consensus 261 ~~P~ILfIDEiD~l~~~~~-----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgR 335 (612)
++|||+||||||+++.++. ++++++++++||||.+||++.... +|+|+|+||+|+.||+||+||||
T Consensus 402 ~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~---------~vi~~a~tnr~d~ld~allrpGR 472 (774)
T KOG0731|consen 402 NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK---------GVIVLAATNRPDILDPALLRPGR 472 (774)
T ss_pred cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC---------cEEEEeccCCccccCHHhcCCCc
Confidence 9999999999999998773 567899999999999999987654 49999999999999999999999
Q ss_pred eeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 336 IDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 336 Fd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
||++|.++.|+..+|.+|++.|+++..+. +++|+..+|..|+||+|+||+|+||+|++.|+|++...|+..|+.+|+++
T Consensus 473 fdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 473 FDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIER 552 (774)
T ss_pred cccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHH
Confidence 99999999999999999999999999885 78899999999999999999999999999999999999999999999998
Q ss_pred HHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEEeeccccccccccCC
Q 007214 415 QLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTT 494 (612)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~~~p~e~~~~~~~~t 494 (612)
++. |. +++...++.++++.+||||||||+++|++++.+|..+++|+|+ +++|++.++|.++ .+.|
T Consensus 553 vi~---G~-------~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiPG-qalG~a~~~P~~~----~l~s 617 (774)
T KOG0731|consen 553 VIA---GM-------EKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIPG-QALGYAQYLPTDD----YLLS 617 (774)
T ss_pred Hhc---cc-------cccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEeccC-CccceEEECCccc----cccc
Confidence 764 22 3445678888999999999999999999999999999999995 4999999999987 4669
Q ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCcCCCchhhHHHHHHHHHHHHhccccc-ccCcccccccccccCCCCCCCCcccccc
Q 007214 495 FGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNA-RLGLAGLTRRVGLLDRPDSSDGDLIKYR 573 (612)
Q Consensus 495 ~~~l~~~i~~~lgGraAE~l~~g~~~t~ga~~Dl~~At~~a~~mv~~~~~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 573 (612)
+++|++|||++|||||||+++||+++||||++||++||++|+.||++|||+ ..|++++ +.... .+.
T Consensus 618 k~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~---------~~~~~---~~~- 684 (774)
T KOG0731|consen 618 KEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISF---------QMLLP---GDE- 684 (774)
T ss_pred HHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceec---------cCccc---ccc-
Confidence 999999999999999999999997799999999999999999999997544 4555444 21111 111
Q ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHhhH--hhhhhhc
Q 007214 574 WDDPQVIPTDMTLELSELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 574 ~~~~~~~~~~~s~~~~~~id~ev~~li~~~~--~~~~l~e 611 (612)
...++||..+++.||.||++|+..|| +..+|++
T Consensus 685 -----~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~ 719 (774)
T KOG0731|consen 685 -----SFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRT 719 (774)
T ss_pred -----cccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22467999999999999999999998 6666653
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.1e-85 Score=736.27 Aligned_cols=532 Identities=30% Similarity=0.492 Sum_probs=441.8
Q ss_pred CCcChHHHHHhhccCCccEEEEEcCeeE--EEEEEec-Cc-eeEEEEeCC-CChhHHHHHHhCCCeeeeecccchhhHHH
Q 007214 36 PKLPYTYFLEKLDSSEVAAVVFTEDLKR--LYVTMKE-GF-PLEYVVDIP-LDPYLFETIASSGAEVDLLQKRQIHYFLK 110 (612)
Q Consensus 36 ~~~~y~~f~~~~~~~~v~~~~~~~~~~~--~~~~~~~-~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 110 (612)
++++||+|++++++|+|++|.+.++... +....++ |. ...|.+.+| .++++.+.|.+++|++...+.....+|..
T Consensus 50 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (638)
T CHL00176 50 SRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLKSNIVT 129 (638)
T ss_pred ceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCccchHHH
Confidence 4699999999999999999999877532 2233332 21 235777788 48999999999999998876655455655
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccchhhhccccccCCcccCCcccccceecCcccHHHHHHHHHH
Q 007214 111 VLIA-LLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIY 189 (612)
Q Consensus 111 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~ 189 (612)
.+.. ++|+++++.+++..........+ ....+++++++++.+.. .....++|+||+|.+++|+++.+++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~f~dv~G~~~~k~~l~eiv~~ 201 (638)
T CHL00176 130 ILSNLLLPLILIGVLWFFFQRSSNFKGG-----PGQNLMNFGKSKARFQM---EADTGITFRDIAGIEEAKEEFEEVVSF 201 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CcccccccchhHHHhhc---ccCCCCCHHhccChHHHHHHHHHHHHH
Confidence 5544 45776665433211111100000 01234667766654332 346679999999999999999999999
Q ss_pred hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhcCCeEEEE
Q 007214 190 MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFV 268 (612)
Q Consensus 190 l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfI 268 (612)
+++|..|..+|...|+|+||+||||||||++|+++|+++++||+++++++|.+. .+.+..+++.+|..|+..+||||||
T Consensus 202 lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfI 281 (638)
T CHL00176 202 LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFI 281 (638)
T ss_pred HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999999877 4667788999999999999999999
Q ss_pred ccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCC
Q 007214 269 DEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (612)
Q Consensus 269 DEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (612)
||+|+++.++. +.+++..+++++||.+||++... .+|+||+|||+++.+|++++||||||++|.+++
T Consensus 282 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~---------~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 282 DEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN---------KGVIVIAATNRVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred ecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC---------CCeeEEEecCchHhhhhhhhccccCceEEEECC
Confidence 99999986543 34567788999999999987654 358999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhccCccc
Q 007214 345 PDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424 (612)
Q Consensus 345 Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~~~~~~~~~ 424 (612)
|+.++|.+||+.|+++..+..++++..+|..|.||+|+||+++|++|++.|++++...|+.+|+.+|+++++.+..+.
T Consensus 353 Pd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~-- 430 (638)
T CHL00176 353 PDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGT-- 430 (638)
T ss_pred CCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccC--
Confidence 999999999999999888888899999999999999999999999999999999999999999999999986532111
Q ss_pred CHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEEeeccccccccccCCHHHHHHHHHH
Q 007214 425 TEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVV 504 (612)
Q Consensus 425 ~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~~ 504 (612)
...+..+++++|||||||||+++++|+.+++++++|.|+|.++|++.+.|.++.+ ..|+.+++++|++
T Consensus 431 ---------~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~---~~t~~~l~~~i~~ 498 (638)
T CHL00176 431 ---------PLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQS---LVSRSQILARIVG 498 (638)
T ss_pred ---------ccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccc---cccHHHHHHHHHH
Confidence 2345567899999999999999999999999999999999999999999987753 4599999999999
Q ss_pred HhhhHHHHHHhcCC-CcCCCchhhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCC-CccccccCCCCCCCCC
Q 007214 505 AHGGRCAERLVFGD-DVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSD-GDLIKYRWDDPQVIPT 582 (612)
Q Consensus 505 ~lgGraAE~l~~g~-~~t~ga~~Dl~~At~~a~~mv~~~~~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 582 (612)
+|||||||+++||+ ++|+||+|||++||+||+.||++|||+.+|++.+... +. ..|+++. ....+
T Consensus 499 ~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~---------~~~~~~~~~~----~~~~~ 565 (638)
T CHL00176 499 ALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLESN---------NSTDPFLGRF----MQRNS 565 (638)
T ss_pred HhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecCC---------CCcccccccc----ccccc
Confidence 99999999999995 6999999999999999999999998877777655432 22 4566653 23356
Q ss_pred CccHHHHHHHHHHHHHHHHhhH--hhhhhhc
Q 007214 583 DMTLELSELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 583 ~~s~~~~~~id~ev~~li~~~~--~~~~l~e 611 (612)
+||++|+..||+||++++++|| |+.||++
T Consensus 566 ~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~ 596 (638)
T CHL00176 566 EYSEEIADKIDMEVRSILHTCYQYAYQILKD 596 (638)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998 8888875
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.1e-79 Score=700.44 Aligned_cols=527 Identities=28% Similarity=0.478 Sum_probs=439.9
Q ss_pred CCcChHHHHHhhccCCccEEEEEcCeeEEEEEEecCceeEEEEeCC-CChhHHHHHHhCCCeeeeecccchhhHHHHHHH
Q 007214 36 PKLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIP-LDPYLFETIASSGAEVDLLQKRQIHYFLKVLIA 114 (612)
Q Consensus 36 ~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (612)
..++|+.|.+.+.++.+.++.+..+ +|.+..+++ ..|.+.+| .++.+...|.++++++...+.....++..++..
T Consensus 30 ~~~~~~~~~~~~~~~~v~Ev~~~~~--tIK~~~~e~--~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~ 105 (644)
T PRK10733 30 RKVDYSTFLQEVNQDQVREARINGR--EINVTKKDS--NRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFIS 105 (644)
T ss_pred ccCCHHHHHHHHHcCCeEEEEEeCC--EEEEEEcCC--ceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHH
Confidence 5699999999999999999999766 466666665 35666666 477899999999999987665544444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccchhhhccccccCCcccCCcccccceecCcccHHHHHHHHHHhCCch
Q 007214 115 LLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPM 194 (612)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~ 194 (612)
++|+++++.++......+.. ++...++.+.+....+..+ .....+|+|+.|.+.+++.+.++++++++|.
T Consensus 106 ~~~~il~ig~~~v~~g~mt~-------G~~~~l~af~~~~~~~~~~---~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~ 175 (644)
T PRK10733 106 WFPMLLLIGVWIFFMRQMQG-------GGGKGAMSFGKSKARMLTE---DQIKTTFADVAGCDEAKEEVAELVEYLREPS 175 (644)
T ss_pred HHHHHHHHHHHHHHHhhhcC-------CCCceeEEeccccccccCc---hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH
Confidence 45555444332211111111 1112456666555544432 4567899999999999999999999999999
Q ss_pred hhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchh
Q 007214 195 QYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (612)
Q Consensus 195 ~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~ 273 (612)
.|..++.+.|+|+||+||||||||++++++|+++++||+.++++++.+. .+.+...++.+|..|+..+||||||||+|+
T Consensus 176 ~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~ 255 (644)
T PRK10733 176 RFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA 255 (644)
T ss_pred HHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhh
Confidence 9999999999999999999999999999999999999999999999887 467788999999999999999999999999
Q ss_pred hhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHH
Q 007214 274 IAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349 (612)
Q Consensus 274 l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~e 349 (612)
++.++. +++.+..+++++||.+||++... .+++||+|||+|+.||++++||||||++|.+++|+.++
T Consensus 256 l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~---------~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 256 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN---------EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHhhhcccCC---------CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 987654 24567788999999999997654 35999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhccCcccCHHHH
Q 007214 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQ 429 (612)
Q Consensus 350 R~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~~~~~~~~~~~~~~ 429 (612)
|.+||+.|+++.++..++++..+++.|.||||+||.++|++|+..|+++++..|+..|+.+|++++....
T Consensus 327 R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~---------- 396 (644)
T PRK10733 327 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGA---------- 396 (644)
T ss_pred HHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999876421
Q ss_pred hhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEEeeccccccccccCCHHHHHHHHHHHhhhH
Q 007214 430 QKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGR 509 (612)
Q Consensus 430 ~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~~~lgGr 509 (612)
++....++.++++.+||||+|||++++++|+.+++++++|+|+|.++|++.++|.++.+ ..|+.+|+++|+++||||
T Consensus 397 ~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~---~~~~~~l~~~i~~~lgGr 473 (644)
T PRK10733 397 ERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAI---SASRQKLESQISTLYGGR 473 (644)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccc---cccHHHHHHHHHHHHhhH
Confidence 11123456678999999999999999999999999999999999999999999998754 358999999999999999
Q ss_pred HHHHHhcCC-CcCCCchhhHHHHHHHHHHHHhccccc-ccCcccccccccccCCCCCCCCccccccCCCCCCCCCCccHH
Q 007214 510 CAERLVFGD-DVTDGGKDDLEKITKIAREMVISPQNA-RLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLE 587 (612)
Q Consensus 510 aAE~l~~g~-~~t~ga~~Dl~~At~~a~~mv~~~~~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 587 (612)
|||+++||+ .+||||+|||++||+||+.||++|||+ .+|++.+ ...+.+.|+|+++ ...++||++
T Consensus 474 aAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~---------~~~~~~~~lg~~~----~~~~~~s~~ 540 (644)
T PRK10733 474 LAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLY---------AEEEGEVFLGRSV----AKAKHMSDE 540 (644)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhh---------ccccccccccccc----ccccccCHH
Confidence 999999994 689999999999999999999998665 3555544 3334456777653 335789999
Q ss_pred HHHHHHHHHHHHHHhhH--hhhhhhc
Q 007214 588 LSELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 588 ~~~~id~ev~~li~~~~--~~~~l~e 611 (612)
|+..||+||++||++|| |+.||++
T Consensus 541 ~~~~id~ev~~il~~~~~~a~~iL~~ 566 (644)
T PRK10733 541 TARIIDQEVKALIERNYNRARQLLTD 566 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 8888875
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4e-72 Score=623.35 Aligned_cols=426 Identities=35% Similarity=0.573 Sum_probs=370.8
Q ss_pred ccchhhhccccccCCcccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHH
Q 007214 147 LFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
.+.+++++..+.. .+.++++|+||+|.+++|+.+.++++++++|..|...|.++|+|+||+||||||||++|+++|+
T Consensus 34 ~~~~~~~~~~~~~---~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 34 AFSFGKSKAKLLN---EEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred CcCCCCCcccccc---CCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4455566654432 3578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcc
Q 007214 227 ESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKE 301 (612)
Q Consensus 227 e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~ 301 (612)
++++||+.++++++.+. .+.+...++.+|+.|+..+||||||||+|.++.++.. .+.+..+++++|+.+||++..
T Consensus 111 ~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 111 EAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 99999999999999877 4677888999999999999999999999999876543 345667899999999998765
Q ss_pred cCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcH
Q 007214 302 RTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG 381 (612)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sg 381 (612)
.. +++||+|||+|+.||++++||||||++|++++|+.++|.+||+.++++.++..++++..++..|.|||+
T Consensus 191 ~~---------~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sg 261 (495)
T TIGR01241 191 NT---------GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSG 261 (495)
T ss_pred CC---------CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCH
Confidence 43 489999999999999999999999999999999999999999999998888788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCc
Q 007214 382 ADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRF 461 (612)
Q Consensus 382 adL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~ 461 (612)
+||+++|++|+..|.++++..|+.+|+..|++++.... ++....+++.+++++||||+|||++++.+|+.
T Consensus 262 adl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~----------~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~ 331 (495)
T TIGR01241 262 ADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGP----------EKKSRVISEKEKKLVAYHEAGHALVGLLLKDA 331 (495)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccc----------ccccccccHHHHHHHHHHHHhHHHHHHhcCCC
Confidence 99999999999999999989999999999999876321 11123456778999999999999999999988
Q ss_pred cccceeeecCCcccceeEEeeccccccccccCCHHHHHHHHHHHhhhHHHHHHhcCCCcCCCchhhHHHHHHHHHHHHhc
Q 007214 462 DWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVIS 541 (612)
Q Consensus 462 ~~~~~~~i~~~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~~~lgGraAE~l~~g~~~t~ga~~Dl~~At~~a~~mv~~ 541 (612)
.+.+..+|.|++..+|++.+.|.++. ...|+.+++++|+++|||||||+++||+ +|+|+++||++||++|+.||.+
T Consensus 332 ~~v~~vsi~prg~~~G~~~~~~~~~~---~~~t~~~l~~~i~v~LaGraAE~~~~G~-~s~Ga~~Dl~~At~lA~~mv~~ 407 (495)
T TIGR01241 332 DPVHKVTIIPRGQALGYTQFLPEEDK---YLYTKSQLLAQIAVLLGGRAAEEIIFGE-VTTGASNDIKQATNIARAMVTE 407 (495)
T ss_pred CceEEEEEeecCCccceEEecCcccc---ccCCHHHHHHHHHHHhhHHHHHHHHhcC-CCCCchHHHHHHHHHHHHHHHH
Confidence 88888999999999999998888753 3569999999999999999999999995 8999999999999999999999
Q ss_pred ccccc-cCcccccccccccCCCCCCCCccccccCCCCCCCCCCccHHHHHHHHHHHHHHHHhhH--hhhhhhc
Q 007214 542 PQNAR-LGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 542 ~~~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~li~~~~--~~~~l~e 611 (612)
|||+. +|++.+ ...+...++++++ ...++||++++..||+||++++++|| ++.||++
T Consensus 408 ~Gm~~~~g~~~~---------~~~~~~~~l~~~~----~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~ 467 (495)
T TIGR01241 408 WGMSDKLGPVAY---------GSDGGDVFLGRGF----AKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTE 467 (495)
T ss_pred hCCCcccCceee---------ccCcccccccccc----ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86653 554443 3233345555543 34578999999999999999999998 8888864
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-56 Score=459.80 Aligned_cols=246 Identities=35% Similarity=0.608 Sum_probs=234.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
++.|.+||+||-|.++.+++|+|.++. |++|+.|.++|+.+|+|||||||||||||+||||+|++.+..|+.+.+|+|+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 468899999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred chh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
..+ |.|++.+|++|+.|+.++||||||||||+++++|. +++.+..+|+-+||++||||... .+|-|
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~---------~nvKV 293 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR---------GNVKV 293 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC---------CCeEE
Confidence 995 89999999999999999999999999999998773 45677889999999999997654 46999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+|||+++.|||||+||||||+.|+||+||.++|.+||+.|.++..+..++|++.||+.|.|+|||||+++|.+|.+.|+
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (612)
|+.+..|+++||.+|+++++.
T Consensus 374 R~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 374 RERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HhccCeecHHHHHHHHHHHHh
Confidence 999999999999999999874
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.6e-53 Score=502.46 Aligned_cols=296 Identities=19% Similarity=0.223 Sum_probs=249.3
Q ss_pred hhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh-----------------------------
Q 007214 194 MQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE----------------------------- 244 (612)
Q Consensus 194 ~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~----------------------------- 244 (612)
..+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|.+..
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 345678999999999999999999999999999999999999999987421
Q ss_pred ---------------hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 007214 245 ---------------KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (612)
Q Consensus 245 ---------------~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~ 309 (612)
+.+..+++.+|+.|++.+||||||||||+++.+ +....++++|+++|++.....
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~-----ds~~ltL~qLLneLDg~~~~~------ 1768 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN-----ESNYLSLGLLVNSLSRDCERC------ 1768 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC-----ccceehHHHHHHHhccccccC------
Confidence 112345899999999999999999999999754 233457899999999864321
Q ss_pred ccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHH--hcCCCCCcc-CCHHHHHHhcCCCcHHHHHH
Q 007214 310 LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH--SAGKQLAED-VNFEELVFRTVGFSGADIRN 386 (612)
Q Consensus 310 ~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~--l~~~~l~~d-vdl~~La~~t~G~sgadL~~ 386 (612)
...+|+||||||+|+.|||||+||||||++|+|+.|+..+|.+++..+ .++..+..+ +|+..+|+.|+|||||||++
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 235699999999999999999999999999999999999999998754 455555543 68999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccce
Q 007214 387 LVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAF 466 (612)
Q Consensus 387 lv~~A~~~A~r~~~~~It~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~ 466 (612)
+||+|++.|+++++..|+.+++..|+++++.+.. . +..+..++ .+|+||+||||++.++++.++++.
T Consensus 1849 LvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~----------~--~~~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~k 1915 (2281)
T CHL00206 1849 LTNEALSISITQKKSIIDTNTIRSALHRQTWDLR----------S--QVRSVQDH-GILFYQIGRAVAQNVLLSNCPIDP 1915 (2281)
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhh----------h--cccCcchh-hhhhhHHhHHHHHHhccCCCCcce
Confidence 9999999999999999999999999999974311 1 11222233 369999999999999999999999
Q ss_pred eeecCC------cccceeEEeeccccccccccCCHHHHHHHHHHHhhhHHHHHHhcCC
Q 007214 467 SQLLPG------GKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGD 518 (612)
Q Consensus 467 ~~i~~~------~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~~~lgGraAE~l~~g~ 518 (612)
++|.++ |...++++++|.+ ..+++.+++.+|++||||||||+++|+.
T Consensus 1916 ISIy~~~~~~r~~~~yl~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~ 1968 (2281)
T CHL00206 1916 ISIYMKKKSCKEGDSYLYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLP 1968 (2281)
T ss_pred EEEecCCccccCcccceeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCc
Confidence 988532 4567999999876 2568999999999999999999999974
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-49 Score=428.95 Aligned_cols=244 Identities=33% Similarity=0.565 Sum_probs=229.3
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.++++|+||.|++++|.+|++.|.| +++|..|.++|+.+|+|||||||||||||++|||+|++++.+|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 467899999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
.+ +|.+++.++++|++|+..+|||||+||||++++.|++ .+.-.++++++||++|||+.... +|+||||
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k---------~V~ViAA 576 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK---------NVLVIAA 576 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC---------cEEEEec
Confidence 99 5899999999999999999999999999999988753 33446789999999999987653 5999999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
||+|+.||+||+||||||+.|+||+||.+.|.+||+.++++.++.+++|+++||..|.|||||||.++|++|++.|.++.
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRES 656 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C--CCccHHHHHHHHHHH
Q 007214 400 H--SKIQQQDIVDVLDKQ 415 (612)
Q Consensus 400 ~--~~It~~dl~~Al~~~ 415 (612)
. ..|+.+|+++|+..+
T Consensus 657 i~a~~i~~~hf~~al~~~ 674 (693)
T KOG0730|consen 657 IEATEITWQHFEEALKAV 674 (693)
T ss_pred cccccccHHHHHHHHHhh
Confidence 4 468999999998765
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-47 Score=408.77 Aligned_cols=245 Identities=32% Similarity=0.581 Sum_probs=224.5
Q ss_pred cccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 162 YVSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 162 ~~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
....|+++|+||-+.++++.+|+..+.+ +++|+.|..+|+..|.|||||||||||||+||||+|+|+|.+|++|.+.++
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL 581 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL 581 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH
Confidence 3457899999999999999999988776 899999999999999999999999999999999999999999999999999
Q ss_pred cch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 241 ~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
.++ +|+.+..+|.+|..|+.++|||||+||+|+|.++|+.+ .....+.+||||++|||...+. +|.|||
T Consensus 582 lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~---------gV~via 652 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR---------GVYVIA 652 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc---------ceEEEe
Confidence 999 58889999999999999999999999999999987643 4556789999999999987665 499999
Q ss_pred ecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc--CCCCCccCCHHHHHHhcC--CCcHHHHHHHHHHHHHH
Q 007214 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLAEDVNFEELVFRTV--GFSGADIRNLVNESGIM 394 (612)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~~dvdl~~La~~t~--G~sgadL~~lv~~A~~~ 394 (612)
|||+|+.+|||++||||||+.++|++|+.++|.+||+.+++ +.++..|+|+++||+.+. |||||||..||++|.+.
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~ 732 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASIL 732 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 778999999999999977 99999999999999999
Q ss_pred HHHhCC----------------CCccHHHHHHHHHHH
Q 007214 395 SVRKGH----------------SKIQQQDIVDVLDKQ 415 (612)
Q Consensus 395 A~r~~~----------------~~It~~dl~~Al~~~ 415 (612)
|.++.- ..+++.||++|+.++
T Consensus 733 AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i 769 (802)
T KOG0733|consen 733 ALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRI 769 (802)
T ss_pred HHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhc
Confidence 998521 135677999998875
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-47 Score=408.41 Aligned_cols=228 Identities=34% Similarity=0.569 Sum_probs=213.1
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-h
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E 244 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~ 244 (612)
.+++|+|+-|.+..-.+|.+++.++++|+.|..+|+.||+|||||||||||||+||+|+|+++++||+.+++.++.+. .
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999988 5
Q ss_pred hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 007214 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (612)
Q Consensus 245 ~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~-~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (612)
|++++++|++|++|+..+|||+||||||+++++|...+.+ .++.+.|||+.||+...... ...+|+||+|||+|
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~-----~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT-----KGDPVLVIGATNRP 339 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc-----CCCCeEEEecCCCC
Confidence 8999999999999999999999999999999988765544 45788999999999775431 23569999999999
Q ss_pred CCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 324 DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 324 ~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
+.|||||+|+||||+.|.+..|+..+|.+||+..+++..++.++|+.+||..|+||.||||.+||.+|+..|+++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=346.77 Aligned_cols=245 Identities=33% Similarity=0.541 Sum_probs=229.9
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.++|.++|.||-|.+-.|+++++.++. |.+.+.|.+.|+.+|+|||||||||||||+||+|+|+.....|+.+.+++|.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 367899999999999999999999995 7888999999999999999999999999999999999999999999999999
Q ss_pred chh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
..+ |+|...+|++|+.|+.++|+||||||+|+++.++- +.+.+..+.+-.||++||||.... +|-|
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~---------nvkv 297 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT---------NVKV 297 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc---------ceEE
Confidence 984 89999999999999999999999999999987763 345677788999999999987655 4999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|.+||+.+.|||||+||||+|++|+||+||..+++-+|.....+..+.+++|++.+..+....||+||..+|++|.+.|.
T Consensus 298 imatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~av 377 (408)
T KOG0727|consen 298 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAV 377 (408)
T ss_pred EEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (612)
|.++-.|...|+++|-..++
T Consensus 378 r~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 378 RENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred HhcceeeeHHHHHHHHHhhc
Confidence 99999999999999987765
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-43 Score=344.62 Aligned_cols=245 Identities=31% Similarity=0.532 Sum_probs=230.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.|..+|+=|-|.+...++++++++. .++|+.|..+|+..|+|+|||||||||||+||+|+|....+.|+.++++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 56778899888889888999999985 89999999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 SE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
.+ +.|+..+|++|-.|+.++|+|||+||||++++.+. +++++..++.-.||+++|||.... ++-||
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk---------nikvi 290 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK---------NIKVI 290 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc---------ceEEE
Confidence 85 89999999999999999999999999999987653 456788889999999999987654 58999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
.|||+.+.|||||+||||+|+.|+||+|+.+.|.+|++.|.++..+...+++..+|...+|.||+++..+|.+|.+.|.|
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (612)
+.+-.+|++|++-|+.+++.
T Consensus 371 errvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 371 ERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred HhhccccHHHHHHHHHHHHh
Confidence 99999999999999999874
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-43 Score=347.84 Aligned_cols=246 Identities=34% Similarity=0.571 Sum_probs=231.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
+++|.+||.||-|..+..+.|+++++. +-+|++|..+|+.+|+|||||||||||||+.|||+|+..+..|+.+-++++.
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 578999999999999999999999995 8899999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .++++..+|++|+.|+....||||+||||++++.+- +++.+..++.-.|+++||+|.. +.++-|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp---------rgnikv 319 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP---------RGNIKV 319 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC---------CCCeEE
Confidence 88 589999999999999999999999999999987652 4567788899999999999654 456899
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
+.+||+|+.|||||+||||+|++++|.+||.+.|..||+.|.+......++-++.||+.++.-+|++|+.+|.+|.+.|+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (612)
+..+...|..|+.+|+++++.
T Consensus 400 rarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 400 RARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred HHHhhhhhHHHHHHHHHHHHH
Confidence 998899999999999999874
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-43 Score=344.37 Aligned_cols=245 Identities=31% Similarity=0.521 Sum_probs=224.7
Q ss_pred ccCCcccccceecCcccHHHHHHH-HHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDEL-MIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~el-v~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.|.-+|+||-|.+...++|.+. +-.+.++++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+.+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 357788999999988655544443 3457888999999999999999999999999999999999999999999999999
Q ss_pred chh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.++ +.|++.+|+.|..|+..+|+||||||+|+++.+|. .++.+..++.-.||+++|||.+.. .|-|
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~---------~vKv 313 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD---------RVKV 313 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc---------ceEE
Confidence 995 89999999999999999999999999999998764 356677889999999999987654 4899
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|++||+.+.|||||+|+||+|++|+||.|+.+.|.+|++.|.++....+|+++++||+.|.+|+|++..++|-+|.+.|.
T Consensus 314 iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiAL 393 (424)
T KOG0652|consen 314 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIAL 393 (424)
T ss_pred EeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (612)
|++...|+.+|+.+++-.+.
T Consensus 394 Rr~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 394 RRGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred hcccccccHHHHHHHHHHHH
Confidence 99999999999999988764
No 16
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.6e-43 Score=342.90 Aligned_cols=238 Identities=31% Similarity=0.499 Sum_probs=218.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
..++++|+||+|++++|+.-+-+++||+||++|.++ .|++||+|||||||||++|||+|+++++|++.+...++...
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 356899999999999999999999999999999876 58999999999999999999999999999999999999988
Q ss_pred -hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 244 -~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~--~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
.|.++.+++.+|+.|++.+|||+||||+|+++-.|.- -.......+|+||++||+..++. +|+.||||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene---------GVvtIaaT 261 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE---------GVVTIAAT 261 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC---------ceEEEeec
Confidence 6899999999999999999999999999999754421 11234568999999999987655 49999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHhC
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIR-NLVNESGIMSVRKG 399 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~-~lv~~A~~~A~r~~ 399 (612)
|+|+.||+|+++ ||...|+|.+|+.++|.+|++.+++..++.-+.+++.++..|.||||+||. .+++.|...|+.++
T Consensus 262 N~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed 339 (368)
T COG1223 262 NRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED 339 (368)
T ss_pred CChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc
Confidence 999999999999 999999999999999999999999999999999999999999999999987 67888999999999
Q ss_pred CCCccHHHHHHHHHHH
Q 007214 400 HSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 400 ~~~It~~dl~~Al~~~ 415 (612)
+..|+.+|++.|+.+.
T Consensus 340 ~e~v~~edie~al~k~ 355 (368)
T COG1223 340 REKVEREDIEKALKKE 355 (368)
T ss_pred hhhhhHHHHHHHHHhh
Confidence 9999999999999873
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=352.06 Aligned_cols=247 Identities=35% Similarity=0.575 Sum_probs=230.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
++.|.-+|.|+-|.++..++|++-++. |.+|+.|...|+++|+||+|||+||||||+||+|+|+.....|+.+-++++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 467889999999999999999999985 8999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .+.|.+.+|++|+.|..++|+|+||||||+++.+|- ++..+..+++-.||+++|+|..+ ..|-|
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr---------gDvKv 327 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR---------GDVKV 327 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc---------CCeEE
Confidence 88 488999999999999999999999999999998763 33445667888999999997764 45999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|.|||+.+.|||||+||||+|+.|+|+.||...+..||..|..+..+..+++++.+......+|||||.++|.+|.++|.
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAl 407 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLAL 407 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHHHh
Q 007214 397 RKGHSKIQQQDIVDVLDKQLLE 418 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~~ 418 (612)
|..+..++++||.+|.++++..
T Consensus 408 RerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 408 RERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred HHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999998753
No 18
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-42 Score=351.95 Aligned_cols=244 Identities=30% Similarity=0.512 Sum_probs=215.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
..+++.|+||+|..++|+.|+|.|-. +..|+ |.+...+|++|||++||||||||+||||+|.|+|..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe-~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPE-FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHH-HHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 46789999999999999999998875 55564 44556789999999999999999999999999999999999999999
Q ss_pred hh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 243 SE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 243 ~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~--~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
.+ |..++.+|-+|+.|+..+|++|||||||+|+++|++ .++..++..+.||.+|||...... ...-|+|+||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e-----~~k~VmVLAA 358 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE-----NSKVVMVLAA 358 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-----cceeEEEEec
Confidence 95 888999999999999999999999999999988754 445567899999999999876532 2234899999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
||.||.||.||+| ||...|+||+||.++|..+++..++...++++++++.|+..+.||||+||.++|++|.+.+.|+-
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CC-----------------CccHHHHHHHHHHH
Q 007214 400 HS-----------------KIQQQDIVDVLDKQ 415 (612)
Q Consensus 400 ~~-----------------~It~~dl~~Al~~~ 415 (612)
.. .|+++||++|+.++
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHc
Confidence 22 36666666666654
No 19
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=372.65 Aligned_cols=250 Identities=28% Similarity=0.494 Sum_probs=222.0
Q ss_pred ccCCcccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 158 LPVGYVSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 158 ~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
...+.++-|+++|+||-|.+++|.+|.+-+.. |++|+.|. .|+++..|||||||||||||++|||+|.|+...|++|.
T Consensus 659 ~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVK 737 (953)
T KOG0736|consen 659 DAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK 737 (953)
T ss_pred hhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeec
Confidence 34566788999999999999999999888875 88887775 48888899999999999999999999999999999999
Q ss_pred cccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCCh---hHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 237 GAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP---RRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 237 ~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~---~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
+.++.++ .|+.++++|++|++|+..+|||||+||+|+++++|+..++ -.++++.|||.+||+....+ ..
T Consensus 738 GPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~-------s~ 810 (953)
T KOG0736|consen 738 GPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS-------SQ 810 (953)
T ss_pred CHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC-------CC
Confidence 9999999 5899999999999999999999999999999988754332 35789999999999988643 35
Q ss_pred cEEEEEecCCCCCccccccCCCceeEEEEeCCC-CHHHHHHHHHHHhcCCCCCccCCHHHHHHhc-CCCcHHHHHHHHHH
Q 007214 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFDVHSAGKQLAEDVNFEELVFRT-VGFSGADIRNLVNE 390 (612)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~P-d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t-~G~sgadL~~lv~~ 390 (612)
+|.||+|||||+.|||||+||||||+-++++++ |.+.+..+|+...++..++.++|+.++|+.+ +.|||||+-.+|..
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSd 890 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSD 890 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHH
Confidence 699999999999999999999999999999887 6788899999999999999999999999986 47999999999999
Q ss_pred HHHHHHHhCC-----------------CCccHHHHHHHHHHH
Q 007214 391 SGIMSVRKGH-----------------SKIQQQDIVDVLDKQ 415 (612)
Q Consensus 391 A~~~A~r~~~-----------------~~It~~dl~~Al~~~ 415 (612)
|.+.|++|.. -.|+++|+.+|.++.
T Consensus 891 A~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l 932 (953)
T KOG0736|consen 891 AMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRL 932 (953)
T ss_pred HHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhc
Confidence 9999988621 137888888888764
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=360.94 Aligned_cols=244 Identities=33% Similarity=0.528 Sum_probs=223.9
Q ss_pred cCCcccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.|+++|+||.|.+.+|++|++.++ ++.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 5778999999999999999999987 589999999999999999999999999999999999999999999999998877
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
. .+.+...++.+|..|+..+||||||||+|+++.++.. .+.+....+.+++..++++... .+++||
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~---------~~v~VI 288 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT---------TNVKVI 288 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC---------CCEEEE
Confidence 6 4677788999999999999999999999999876532 2334567888999999986543 348999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
+|||+++.||++++||||||+.|+|++|+.++|.+||+.++.+..+..++++..++..|.||||+||.++|++|++.|.+
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (612)
+++..|+.+|+.+|+.+++
T Consensus 369 ~~~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 369 KNRYVILPKDFEKGYKTVV 387 (398)
T ss_pred cCCCccCHHHHHHHHHHHH
Confidence 9999999999999999875
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.4e-39 Score=348.65 Aligned_cols=244 Identities=35% Similarity=0.604 Sum_probs=222.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.++++|+||.|.++.++.+.+.+.+ +.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 56789999999999999999998875 89999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
. .+.+...++.+|..|+..+||||||||+|++++++.. ++.+..+++.+++.+++++... .++.||
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~---------~~v~VI 274 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR---------GNVKII 274 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC---------CCEEEE
Confidence 6 4667788999999999999999999999999866532 2344566788899888876543 358999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
+|||+++.+|++++||||||+.|+|++|+.++|.+||+.|+++..+..++++..++..|.||+|+||+++|++|++.|.+
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (612)
++...|+.+||.+|++++.
T Consensus 355 ~~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 355 DDRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred cCCCCcCHHHHHHHHHHHh
Confidence 9999999999999999875
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=350.83 Aligned_cols=245 Identities=35% Similarity=0.576 Sum_probs=224.0
Q ss_pred cCCcccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.|..+|+||.|.++.++.+.+.++ .+.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 5678999999999999999999997 489999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
. .+.+...++.+|..|+.++||||||||||+++.++. +++.+...++.+++..++++... .++.||
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~---------~~V~VI 326 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR---------GDVKVI 326 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc---------CCeEEE
Confidence 7 467778899999999999999999999999987653 22344566788899999986543 348999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
+|||+++.||++++||||||++|+|++||.++|.+||+.|+.+..+..++++..++..+.|+||+||.++|++|++.|.+
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (612)
+++..|+.+|+.+|+++++.
T Consensus 407 ~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 407 ERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred hcCCccCHHHHHHHHHHHHh
Confidence 99999999999999999763
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-38 Score=350.95 Aligned_cols=244 Identities=37% Similarity=0.618 Sum_probs=224.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
...+.++|+|+.|.+++|+.+++.+++ ++.|+.|...|.++|+|+|||||||||||++|+|+|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 357889999999999999999999997 7788888888999999999999999999999999999999999999999998
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~-~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
+. .+..++.++.+|..|++.+||||||||+|++++.+...... ....+++++.+|++..... +|+||+|
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~---------~v~vi~a 384 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE---------GVLVIAA 384 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC---------ceEEEec
Confidence 88 58999999999999999999999999999999887654443 3589999999999976654 4999999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCC--CCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
||+|+.+|+|++||||||+.++|++||.++|.+||+.|++... +..++++..+++.|.||+|+||.++|++|++.+.+
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~ 464 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALR 464 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998443 46789999999999999999999999999999999
Q ss_pred hC-CCCccHHHHHHHHHHH
Q 007214 398 KG-HSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 398 ~~-~~~It~~dl~~Al~~~ 415 (612)
+. ...|+++|+.+|+.+.
T Consensus 465 ~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 465 EARRREVTLDDFLDALKKI 483 (494)
T ss_pred HhccCCccHHHHHHHHHhc
Confidence 88 6789999999999873
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=346.40 Aligned_cols=226 Identities=30% Similarity=0.525 Sum_probs=209.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.....|+||.|..++|+.|+++++| -+.|..|...+++.+.|||||||||||||+||.|+|...++.|++|.+.++..
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 34458999999999999999999998 57888999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCC-hhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 SE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD-PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~-~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
.+ |..+..+|++|..|+..+|||||+||+|+++++|+..+ .-.++++||||++|||...-. +|.|+|||
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~---------GV~i~aaT 810 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD---------GVYILAAT 810 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc---------eEEEEEec
Confidence 95 78899999999999999999999999999999875433 345789999999999977654 49999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
.||+.|||||+||||+|+.++.+.|+..+|.+|++...+....+.++|++.+|..|.|||||||+.++-.|.+.|+.+
T Consensus 811 sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 811 SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998899999999999999999999999999999999888764
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-37 Score=361.99 Aligned_cols=243 Identities=36% Similarity=0.585 Sum_probs=220.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.+.++|+||.|.+++|+.|++.+.+ +++|..|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 45688999999999999999999986 88999999999999999999999999999999999999999999999999988
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC--ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~--~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
. .+.++..++.+|..|+..+||||||||+|++++++... +......+++||.+||+.... .+++||+|
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~---------~~v~vI~a 596 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL---------SNVVVIAA 596 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC---------CCEEEEEe
Confidence 7 57788899999999999999999999999998766432 233567899999999986543 35999999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
||+|+.||++++||||||+.|++++||.++|.+||+.+.++.++..++++..+|..|.||||+||.++|++|++.|.++.
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~ 676 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRES 676 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998842
Q ss_pred ------------------CCCccHHHHHHHHHHH
Q 007214 400 ------------------HSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 400 ------------------~~~It~~dl~~Al~~~ 415 (612)
...|+++|+.+|+.++
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 677 IGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred hhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 1258899999999874
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.9e-37 Score=339.75 Aligned_cols=238 Identities=23% Similarity=0.358 Sum_probs=207.5
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~- 243 (612)
.++.+|+||.|.+.+|+.+++....+ +..+...|++.|+|+|||||||||||++|+++|++++.|++.++++.+...
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45788999999999999998765433 334567799999999999999999999999999999999999999998877
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~--~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (612)
.+.+..+++.+|..|+..+||||||||||.++.++. +.+....+.++.++..|+.. ..+|+||+|||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN 368 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATAN 368 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecC
Confidence 578888999999999999999999999999976432 23344567888899888752 23589999999
Q ss_pred CCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC--CccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l--~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
+++.||++++||||||+.++++.|+.++|.+||+.|+++... ..+.++..+|..|.||||+||+++|++|+..|..++
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~ 448 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK 448 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999987543 347899999999999999999999999999998876
Q ss_pred CCCccHHHHHHHHHHHH
Q 007214 400 HSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 400 ~~~It~~dl~~Al~~~~ 416 (612)
+ .++.+|+..|+.+..
T Consensus 449 ~-~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 449 R-EFTTDDILLALKQFI 464 (489)
T ss_pred C-CcCHHHHHHHHHhcC
Confidence 4 589999999998764
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.2e-36 Score=326.60 Aligned_cols=243 Identities=35% Similarity=0.601 Sum_probs=219.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.++++|+||.|.++.++.|.+.+.+ +.+|..|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 56789999999999999999998875 78999999999999999999999999999999999999999999999888876
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
. .+.+...++.+|..++...||||||||+|.++.++.. ++.+...++.+++.+++++... .++.||
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~---------~~v~vI 265 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR---------GNVKVI 265 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC---------CCEEEE
Confidence 6 4666778999999999999999999999999765432 2344567788899988876433 358999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
+|||+++.+|++++||||||+.|+|+.|+.++|.+||+.++.+..+..++++..+++.|.||+|+||.++|++|++.|.+
T Consensus 266 ~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 266 AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~~ 415 (612)
+++..|+.+|+.+|++++
T Consensus 346 ~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 346 EERDYVTMDDFIKAVEKV 363 (364)
T ss_pred hCCCccCHHHHHHHHHHh
Confidence 999999999999999875
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-37 Score=317.08 Aligned_cols=227 Identities=31% Similarity=0.548 Sum_probs=205.3
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcC-CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
+....++|+|+.|.+++++.|++.|.. ++.|+.|...+ .++|+|||||||||||||++|+|+|+++|.+|+.|+++.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 467789999999999999999999886 78888775332 6789999999999999999999999999999999999999
Q ss_pred cch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 241 ~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
.+. ++.+.+.++.+|..|.+-+||||||||+|.+.+.|..+ ++.....-+++....||+..... ..|+|++
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~-------~rVlVlg 236 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDS-------ERVLVLG 236 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCC-------ceEEEEe
Confidence 998 68888899999999999999999999999998776433 33445677889999999876542 4599999
Q ss_pred ecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
|||+|..||.|++| |+.+.++|+.|+.++|.+||+..+++..+.+++|+.++|..|.||||.||.++|..|++..++.
T Consensus 237 ATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999988874
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-38 Score=315.40 Aligned_cols=225 Identities=29% Similarity=0.509 Sum_probs=200.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.++|++.|+||+|.+.+|+.|++.|.. ++.|+.|. .+..+.+|+||||||||||++||+|+|.|++-.|++|+.++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT-GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 468999999999999999999998874 66665554 3456889999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
+. .++.++.++.+|+.|+.+.|+||||||||++++.++.+ ++..+++...+|.+|.|..... ++|+|++|
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~--------~gvLVLgA 275 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN--------DGVLVLGA 275 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC--------CceEEEec
Confidence 99 58888999999999999999999999999999887654 4445678889999999976543 57999999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC-CccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
||-|+.||.|++| ||++.|++|+|+...|..+|+.|+...+. ..+.|+.+|++.|.||||+||.-+|+.|.+..+|+
T Consensus 276 TNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 276 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 9999999999999 99999999999999999999999987654 35678999999999999999999999988877665
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-38 Score=314.80 Aligned_cols=243 Identities=33% Similarity=0.542 Sum_probs=222.5
Q ss_pred CCcccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
...++|+.+-|.-++..++.+.++ .+.+|..|...|+++|+|++||||||||||++|+++|..+|++|+.++.+++.+.
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 446899999888877777777776 5999999999999999999999999999999999999999999999999999998
Q ss_pred h-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 244 E-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 244 ~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
+ ++.++.+|+.|..|+...|||||+||||++++++.. .+.+...|+..|+++|+++... ..|-+|+
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l---------~rVk~Im 276 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL---------HRVKTIM 276 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc---------ccccEEE
Confidence 4 788889999999999999999999999999987642 3456678999999999997654 3589999
Q ss_pred ecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
|||+|+.|||+|+||||+|+.+++|+|+...|..|++.|.........+|.+.+.+.+.||+|+|+.+.|.+|.+.|++.
T Consensus 277 atNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 277 ATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred ecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHH
Q 007214 399 GHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 399 ~~~~It~~dl~~Al~~~~ 416 (612)
.+..+-++|+..++.++-
T Consensus 357 ~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 357 ERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred hhHHHhHHHHHHHHHHHH
Confidence 988999999999998763
No 31
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-36 Score=328.11 Aligned_cols=275 Identities=28% Similarity=0.467 Sum_probs=242.9
Q ss_pred CcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~- 243 (612)
..++ .++.|....-..+++++.+ +.+|..|...|.++|+|+|+|||||||||.+++++|++.++.++.++++++...
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4555 6777777777788888886 889999999999999999999999999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHhhcC-CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 007214 244 EKSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~-P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (612)
.+++.+.+|..|+.|.+.+ |+||||||+|++++++...+.-..++..+|+..||+.... .+++|++|||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~---------~~vivl~atnr 329 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPD---------AKVIVLAATNR 329 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCc---------CcEEEEEecCC
Confidence 5889999999999999999 9999999999999988766665677899999999997743 35999999999
Q ss_pred CCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCC
Q 007214 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 402 (612)
Q Consensus 323 p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~ 402 (612)
|+.||++++| ||||+.+.+..|+..+|.+|++.+.++.++..++++..+|..|.||+|+||.++|++|++.+.++
T Consensus 330 p~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---- 404 (693)
T KOG0730|consen 330 PDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---- 404 (693)
T ss_pred ccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----
Confidence 9999999999 99999999999999999999999999999888899999999999999999999999999999887
Q ss_pred ccHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEEee
Q 007214 403 IQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFY 482 (612)
Q Consensus 403 It~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~~~ 482 (612)
+++++..|...+.. .|..|. -.-.|+++|.|+|++...+.++..+++|
T Consensus 405 -~~~~~~~A~~~i~p--------------------------sa~Re~-----~ve~p~v~W~dIGGlE~lK~elq~~V~~ 452 (693)
T KOG0730|consen 405 -TLEIFQEALMGIRP--------------------------SALREI-----LVEMPNVSWDDIGGLEELKRELQQAVEW 452 (693)
T ss_pred -hHHHHHHHHhcCCc--------------------------hhhhhe-----eccCCCCChhhccCHHHHHHHHHHHHhh
Confidence 77788777654321 011121 1357999999999999999999999999
Q ss_pred ccccc
Q 007214 483 PREDT 487 (612)
Q Consensus 483 p~e~~ 487 (612)
|.+|+
T Consensus 453 p~~~p 457 (693)
T KOG0730|consen 453 PLKHP 457 (693)
T ss_pred hhhch
Confidence 99885
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.2e-34 Score=314.60 Aligned_cols=246 Identities=26% Similarity=0.404 Sum_probs=195.9
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC----------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---------- 231 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---------- 231 (612)
++.|+++|+||.|.++.++.+++.+.. +.+|..|..+|+++|+|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 457889999999999999998888774 889999999999999999999999999999999999998655
Q ss_pred eeEEecccccch-hhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCC--ChhHHHHHHHHHHHhcCCcccCC
Q 007214 232 FVFASGAEFTDS-EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGDKERTG 304 (612)
Q Consensus 232 ~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~--~~~~~~~l~~LL~~ld~~~~~~~ 304 (612)
|+.++++++... .+.+...++.+|..|+.. .||||||||+|++++++..+ ++.....+++||..||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 556667777666 467788899999988764 69999999999998766432 334456789999999997643
Q ss_pred cccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcC-CCCCc---------cCCHHHHHH
Q 007214 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG-KQLAE---------DVNFEELVF 374 (612)
Q Consensus 305 ~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~-~~l~~---------dvdl~~La~ 374 (612)
.+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.|+.. .++.. ..++..++.
T Consensus 332 -------~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 332 -------DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred -------CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999998764 23311 111222221
Q ss_pred h-----------------------------cCCCcHHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHHHH
Q 007214 375 R-----------------------------TVGFSGADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 375 ~-----------------------------t~G~sgadL~~lv~~A~~~A~r~----~~~~It~~dl~~Al~~~~~ 417 (612)
. +..+||++|+++|.+|...|+++ +...|+.+|+..|+.+-..
T Consensus 405 ~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~ 480 (512)
T TIGR03689 405 RAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFR 480 (512)
T ss_pred HHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhc
Confidence 1 34567888888888887777765 3346778888888776553
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-32 Score=318.22 Aligned_cols=225 Identities=38% Similarity=0.615 Sum_probs=203.4
Q ss_pred CCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
.++++|+||.|.+++++.+++++.+ +++|+.|..+|+.+|+|+|||||||||||++|+++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4678999999999999999999885 889999999999999999999999999999999999999999999999998776
Q ss_pred -hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 007214 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (612)
Q Consensus 244 -~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (612)
.+.....++.+|+.|....|+||||||+|.+.+++... .......+++|+..|++.... ..++||+|||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~---------~~vivI~atn 322 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR---------GRVIVIGATN 322 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC---------CCEEEEeecC
Confidence 46677889999999999999999999999998765433 233456788999999886543 3489999999
Q ss_pred CCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
+++.+|++++|||||++.+.++.|+.++|.+||+.+.++..+..++++..++..|.||+++|+..++++|+..+.++
T Consensus 323 ~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r 399 (733)
T TIGR01243 323 RPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRR 399 (733)
T ss_pred ChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999988765
No 34
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=7.6e-33 Score=275.68 Aligned_cols=183 Identities=34% Similarity=0.485 Sum_probs=140.9
Q ss_pred cHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEEeec
Q 007214 404 QQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYP 483 (612)
Q Consensus 404 t~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~~~p 483 (612)
|++||.+|+++++.+ . ++....++.++|+++|||||||||+++++|..+++.+++|.|++..+|++.+.|
T Consensus 1 ~~~d~~~a~drv~~G---~-------~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~ 70 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMG---P-------EKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTP 70 (213)
T ss_dssp -HHHHHHHHHHHHCC---S-------CCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECH
T ss_pred CHHHHHHHHHHHhcC---c-------CcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEecc
Confidence 689999999999753 2 122345678889999999999999999999988999999999999999999999
Q ss_pred cccccccccCCHHHHHHHHHHHhhhHHHHHHhcC-CCcCCCchhhHHHHHHHHHHHHhcccccc-cCcccccccccccCC
Q 007214 484 REDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNAR-LGLAGLTRRVGLLDR 561 (612)
Q Consensus 484 ~e~~~~~~~~t~~~l~~~i~~~lgGraAE~l~~g-~~~t~ga~~Dl~~At~~a~~mv~~~~~~~-~g~~~~~~~~g~~~~ 561 (612)
.++.. ..|+++++++|+++|||||||+++|| +++|+|+++||++||+||+.||.+|||+. +|++.+....
T Consensus 71 ~~~~~---~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~----- 142 (213)
T PF01434_consen 71 DEDRY---IRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPND----- 142 (213)
T ss_dssp HTT-S---S-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-----
T ss_pred chhcc---cccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccc-----
Confidence 88743 35999999999999999999999999 46999999999999999999999998764 7766554431
Q ss_pred CCCCCCccccccCCCCCCCCCCccHHHHHHHHHHHHHHHHhhH--hhhhhhc
Q 007214 562 PDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~li~~~~--~~~~l~e 611 (612)
+.+.|++..+ ....++|+++...+|+||++++++|| |+.||.+
T Consensus 143 ---~~~~~~~~~~----~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~ 187 (213)
T PF01434_consen 143 ---DDEVFLGREW----NSRRPMSEETRALIDREVRKLLEEAYARAKEILEE 187 (213)
T ss_dssp ----S-SSS-E-------EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccccccc----cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444433 22457899999999999999999998 8888875
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=9.6e-31 Score=272.85 Aligned_cols=222 Identities=17% Similarity=0.194 Sum_probs=168.9
Q ss_pred CcccccceecC-cccHHHHHHHHHHh-CCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 166 TKSMYKEVVLG-GDVWDLLDELMIYM-GNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 166 ~~~~f~dvvG~-~e~k~~L~elv~~l-~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
...+|+++.|. --.+.-+..+.-.+ +|-. ...|+++|++++||||||||||++|+++|+++|++++.++++++.+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l--~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFL--ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhh--hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 35678888544 44555555544322 2221 12578999999999999999999999999999999999999999988
Q ss_pred -hhhhHHHHHHHHHHHhh-----cCCeEEEEccchhhhccCCCCChh-HHHHH-HHHHHHhcCCcccC--Ccc-cccccc
Q 007214 244 -EKSGAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPR-RRATF-EALIAQLDGDKERT--GID-RFSLRQ 312 (612)
Q Consensus 244 -~~~~~~~ir~lF~~A~~-----~~P~ILfIDEiD~l~~~~~~~~~~-~~~~l-~~LL~~ld~~~~~~--~~~-~~~~~~ 312 (612)
.|++++.+|.+|..|+. .+||||||||||++++++...+.. ..+.+ .+|++.||+...-. +.- ......
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 68999999999999975 469999999999999877543322 23444 78999998742210 000 012345
Q ss_pred cEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCC----CcHHHHHHHH
Q 007214 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG----FSGADIRNLV 388 (612)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G----~sgadL~~lv 388 (612)
+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++..+. ..++..|+..++| |.||--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 6999999999999999999999999965 6899999999999999987765 5788889988877 4565444555
Q ss_pred HHHH
Q 007214 389 NESG 392 (612)
Q Consensus 389 ~~A~ 392 (612)
.++.
T Consensus 345 d~~v 348 (413)
T PLN00020 345 DDEV 348 (413)
T ss_pred HHHH
Confidence 4443
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-31 Score=281.61 Aligned_cols=243 Identities=27% Similarity=0.470 Sum_probs=202.3
Q ss_pred cCCcccccceecCcccHHHHHHHH-----HHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-CeeEEec
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELM-----IYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-PFVFASG 237 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv-----~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-~~i~vs~ 237 (612)
-.|.-.|+++ |.+..+++...+. ..+-.|..-.++|++.-+|+|||||||||||++||.+..-++. +--.|++
T Consensus 212 i~Pdf~Fe~m-GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 212 INPDFNFESM-GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred cCCCCChhhc-ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3566778887 4444555544433 2345677888999999999999999999999999999988854 5667899
Q ss_pred ccccch-hhhhHHHHHHHHHHHhhc--------CCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCCcccCCc
Q 007214 238 AEFTDS-EKSGAARINEMFSIARRN--------APAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGDKERTGI 305 (612)
Q Consensus 238 s~~~~~-~~~~~~~ir~lF~~A~~~--------~P~ILfIDEiD~l~~~~~~---~~~~~~~~l~~LL~~ld~~~~~~~~ 305 (612)
+++.+. .|.+++++|.+|..|... .=.||++||||+++.+|.+ +..-.++++||||..|||..+-
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--- 367 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--- 367 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh---
Confidence 999988 589999999999988642 1259999999999987753 2345678999999999997654
Q ss_pred ccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC----CCCccCCHHHHHHhcCCCcH
Q 007214 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK----QLAEDVNFEELVFRTVGFSG 381 (612)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~La~~t~G~sg 381 (612)
++++||+-|||++.||+||+|||||..++++.+||++.|.+|++.|.+.. .+..|+|+.+||..|..|||
T Consensus 368 ------NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSG 441 (744)
T KOG0741|consen 368 ------NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSG 441 (744)
T ss_pred ------hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCch
Confidence 46999999999999999999999999999999999999999999998643 46789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC---------------CCCccHHHHHHHHHHHH
Q 007214 382 ADIRNLVNESGIMSVRKG---------------HSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 382 adL~~lv~~A~~~A~r~~---------------~~~It~~dl~~Al~~~~ 416 (612)
|+|+.+++.|...|..+. .-.|+++|+..|++.+.
T Consensus 442 AEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 442 AELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred hHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 999999999988887542 12489999999999654
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-30 Score=296.73 Aligned_cols=227 Identities=31% Similarity=0.535 Sum_probs=200.5
Q ss_pred CCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEecc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s 238 (612)
+..++|++|.|.+.+++.|++.|.+ +..|+.|..+++.+|+|||+|||||||||+.|+++|..+ .+-|+.-.+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 5678999999999999999999986 889999999999999999999999999999999999876 4567777888
Q ss_pred cccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 239 EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 239 ~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
+..+. ++.....++.+|++|+++.|+|||+||||-+++.++. .......++..||..|||...+. .|+|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg---------qVvv 409 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG---------QVVV 409 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCC---------ceEE
Confidence 88777 5788889999999999999999999999999887744 33455678889999999977654 5999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
|+|||+|+.+||||+||||||+.+++++|+.+.|.+|+..|.++..-. ...-+..+|..|.|+-|+||+.+|.+|++.+
T Consensus 410 igATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~ 489 (1080)
T KOG0732|consen 410 IGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIA 489 (1080)
T ss_pred EcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999998765421 1123678999999999999999999999999
Q ss_pred HHhCC
Q 007214 396 VRKGH 400 (612)
Q Consensus 396 ~r~~~ 400 (612)
.++..
T Consensus 490 ~~r~~ 494 (1080)
T KOG0732|consen 490 LRRSF 494 (1080)
T ss_pred hcccc
Confidence 98754
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-30 Score=272.42 Aligned_cols=225 Identities=31% Similarity=0.466 Sum_probs=196.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhC-CchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMG-NPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~-~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
..+++.|+|++|.+.+|+.+.+.+.+.- .|..|..+ ..+++|+||.||||||||+|++|+|.|.+..|+.++++.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 4567999999999999999999999854 47777654 346789999999999999999999999999999999999999
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
. .|.++..++.+|..|+..+|+|+||||+|.++.++.. .++.......++|.+.++..... ...|+||+||
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~-------~drvlvigaT 297 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP-------DDRVLVIGAT 297 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC-------CCeEEEEecC
Confidence 8 4888899999999999999999999999999987743 34445577888888888876543 3579999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC-CCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-QLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
|+|+.+|.|++| ||.+.+++|+|+.+.|..+|+..+... ....+.|+..|++.|.|||+.||.++|.+|++--.+.
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 999999999999 999999999999999999999888766 3345678999999999999999999999999766554
No 39
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8e-28 Score=265.13 Aligned_cols=265 Identities=22% Similarity=0.298 Sum_probs=211.3
Q ss_pred HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhc
Q 007214 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRN 261 (612)
Q Consensus 183 L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~ 261 (612)
+.++++++.-+..-...+......+||+|+||||||++++++|.++|+|++.++|.++... ....+..+...|..|+..
T Consensus 410 ~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~ 489 (953)
T KOG0736|consen 410 VLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRC 489 (953)
T ss_pred HHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc
Confidence 4466666665554455556667789999999999999999999999999999999999887 567788899999999999
Q ss_pred CCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEE
Q 007214 262 APAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340 (612)
Q Consensus 262 ~P~ILfIDEiD~l~~~~~~~~~~-~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I 340 (612)
.|||||+-++|.++..++++.+. ..+.++.++. .+.+.. ...+++||++|+..+.+++.+++ -|-..|
T Consensus 490 ~pavifl~~~dvl~id~dgged~rl~~~i~~~ls-~e~~~~--------~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei 558 (953)
T KOG0736|consen 490 SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS-NEDFKF--------SCPPVIVVATTSSIEDLPADIQS--LFLHEI 558 (953)
T ss_pred CceEEEEeccceeeecCCCchhHHHHHHHHHHHh-cccccC--------CCCceEEEEeccccccCCHHHHH--hhhhhc
Confidence 99999999999997554443222 2234444444 222221 22458999999999999999998 888899
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh---CC-----------------
Q 007214 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK---GH----------------- 400 (612)
Q Consensus 341 ~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~---~~----------------- 400 (612)
.++.|++++|.+||++++....+..++.+..++.+|.||+.+|+..++..+-..+..+ ..
T Consensus 559 ~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~ 638 (953)
T KOG0736|consen 559 EVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAG 638 (953)
T ss_pred cCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccccccccc
Confidence 9999999999999999999999999999999999999999999999988773322221 11
Q ss_pred CCccHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEE
Q 007214 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISV 480 (612)
Q Consensus 401 ~~It~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~ 480 (612)
..++++|+.+|+.+. -.|...||+|+++|++.|+|+|++...|.++.+|+
T Consensus 639 ~~l~~edf~kals~~------------------------------~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTI 688 (953)
T KOG0736|consen 639 FLLTEEDFDKALSRL------------------------------QKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTI 688 (953)
T ss_pred ceecHHHHHHHHHHH------------------------------HHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHh
Confidence 234455555444432 23667799999999999999999999999999999
Q ss_pred eecccccc
Q 007214 481 FYPREDTI 488 (612)
Q Consensus 481 ~~p~e~~~ 488 (612)
++|++|+.
T Consensus 689 qlPL~hpe 696 (953)
T KOG0736|consen 689 QLPLKHPE 696 (953)
T ss_pred cCcccChh
Confidence 99999974
No 40
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-24 Score=228.09 Aligned_cols=207 Identities=22% Similarity=0.343 Sum_probs=166.0
Q ss_pred CcccccceecCcccHH-HHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh
Q 007214 166 TKSMYKEVVLGGDVWD-LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~-~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~ 244 (612)
.+.+|+.|+-..+.|+ .++++.+|+++..-|.+.|.+..||.|||||||||||+++.|+|++++..++-++.++.....
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~ 275 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS 275 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH
Confidence 4599999999888876 667888999999999999999999999999999999999999999999999988776655432
Q ss_pred hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC--C----C--hhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR--K----D--PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 245 ~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~--~----~--~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.++.++..+... +||+|.+||+-..-+.. . . ....-++..||+.+||..+..+.+ -||
T Consensus 276 -----dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~E-------RIi 341 (457)
T KOG0743|consen 276 -----DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDE-------RII 341 (457)
T ss_pred -----HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCc-------eEE
Confidence 277777766544 79999999987542211 1 1 123468999999999999887643 389
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcC--CCcHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTV--GFSGADIRNLV 388 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~--G~sgadL~~lv 388 (612)
|.|||.++.|||||+||||+|.+|+++.-+.++-..+++.|+.... +..-+.++.+.-. ..||||++..+
T Consensus 342 vFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 342 VFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999987533 1222344444433 35999987543
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.7e-24 Score=219.07 Aligned_cols=232 Identities=26% Similarity=0.432 Sum_probs=181.1
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~ 244 (612)
..+..|++||.....+..|+.+...-.|.+..+ .+-++||+|||||||||++||.+|...|..+-.+.+.++....
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~----apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG 424 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQ----APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG 424 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhccccccc----chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc
Confidence 445569999999999999999998877774433 4678999999999999999999999999999999999998887
Q ss_pred hhhHHHHHHHHHHHhhcC-CeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 007214 245 KSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (612)
Q Consensus 245 ~~~~~~ir~lF~~A~~~~-P~ILfIDEiD~l~~~~~~--~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (612)
..+...+..+|++|++.. .-+|||||.|++.-.+.. .+...+..+|.||-.--. ....++++.+||
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-----------qSrdivLvlAtN 493 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSRDIVLVLATN 493 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-----------cccceEEEeccC
Confidence 788888999999998754 468999999999865543 355567788888864321 123488999999
Q ss_pred CCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC----c-------------------cCC----HHHHHH
Q 007214 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA----E-------------------DVN----FEELVF 374 (612)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~----~-------------------dvd----l~~La~ 374 (612)
+|..+|.|+-. |||..|+||+|..++|..+|..|+.+.-.. . ..+ +.+.|+
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 99999999998 999999999999999999999887532110 0 011 567789
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
.|.||||++|..|+-.-...++-+....++..-+.+.++
T Consensus 572 kTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 572 KTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred hccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 999999999999986544444434334444444444333
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=3.4e-21 Score=175.25 Aligned_cols=129 Identities=36% Similarity=0.662 Sum_probs=112.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhcC-CeEEEEccchhhhccC-CCCCh
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRH-ARKDP 283 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~-P~ILfIDEiD~l~~~~-~~~~~ 283 (612)
|||+||||||||++|+.+|+.++.+++.++++++... .......++.+|..++... ||||||||+|.+.... ...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 6999999999999999999999999999999999855 5777889999999999887 9999999999998765 23445
Q ss_pred hHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCC
Q 007214 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (612)
Q Consensus 284 ~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (612)
.....++.|+..++..... ..+++||+|||.++.++++++| +||++.|++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccc--------cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5667889999999986653 2359999999999999999998 89999999874
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.7e-20 Score=192.61 Aligned_cols=211 Identities=17% Similarity=0.184 Sum_probs=153.1
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCcc---CceEEEEcCCCChHHHHHHHHHHHc---C----CCeeEEecc
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF---VRGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGA 238 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~---p~gvLL~GPPGTGKT~LAralA~e~---g----~~~i~vs~s 238 (612)
.+++++|.+++|+.+++++.+..........|... +.++||+||||||||++|+++|+.+ + .+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999999999999987766666667653 3468999999999999999999864 2 378889998
Q ss_pred cccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 239 EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 239 ~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
++... .+.....++.+|+.|. ++||||||+|.|... ...+.....++.|+..|+.... ++++|
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~~~~~~~~~i~~Ll~~~e~~~~-----------~~~vi 147 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--GEKDFGKEAIDTLVKGMEDNRN-----------EFVLI 147 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--CccchHHHHHHHHHHHHhccCC-----------CEEEE
Confidence 88776 4566677888888774 579999999999632 2222334567888888876432 25666
Q ss_pred EecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC-HHHHHHh---------cCCCcHH
Q 007214 318 CATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFR---------TVGFSGA 382 (612)
Q Consensus 318 aaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~---------t~G~sga 382 (612)
++++..+ .++|++.+ ||+..|+++.++.+++.+|++.++......-+.+ +..++.. ...-+++
T Consensus 148 la~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R 225 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNAR 225 (261)
T ss_pred ecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHH
Confidence 6554322 36889998 9999999999999999999998887544321111 2333211 1123678
Q ss_pred HHHHHHHHHHHHHHH
Q 007214 383 DIRNLVNESGIMSVR 397 (612)
Q Consensus 383 dL~~lv~~A~~~A~r 397 (612)
.+.|++..|....+.
T Consensus 226 ~~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 226 YVRNIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887655543
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=1.1e-20 Score=196.42 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=160.7
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccC---ceEEEEcCCCChHHHHHHHHHHHc---C----CCeeEEecc
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFV---RGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGA 238 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p---~gvLL~GPPGTGKT~LAralA~e~---g----~~~i~vs~s 238 (612)
-+++++|.+++|+.+.+++.++..+..+...|...+ .++||+||||||||++|+++|+.+ | .+++.++++
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 345899999999999999998887777778887655 348999999999999999999875 2 368999988
Q ss_pred cccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 239 EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 239 ~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
++... .+..+...+.+|+.|. ++||||||+|.+...+ +.++.....++.|+..|+... .+++||
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~-~~~~~~~e~~~~L~~~me~~~-----------~~~~vI 165 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPD-NERDYGSEAIEILLQVMENQR-----------DDLVVI 165 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCC-CccchHHHHHHHHHHHHhcCC-----------CCEEEE
Confidence 88765 3555566777887763 4799999999996432 223334567788888887532 237788
Q ss_pred EecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCC--CCccCCHHHHHH----h--cCCCc-HHH
Q 007214 318 CATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVF----R--TVGFS-GAD 383 (612)
Q Consensus 318 aaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~----~--t~G~s-gad 383 (612)
++++... .++|+|++ ||+.+|+|++|+.+++.+|++.++.... +.++. ...+.. . .+.|. +++
T Consensus 166 ~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~ 242 (287)
T CHL00181 166 FAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARS 242 (287)
T ss_pred EeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHH
Confidence 8776422 34689999 9999999999999999999999887543 32221 222222 1 24444 899
Q ss_pred HHHHHHHHHHHHHHh----CCCCccHHHH
Q 007214 384 IRNLVNESGIMSVRK----GHSKIQQQDI 408 (612)
Q Consensus 384 L~~lv~~A~~~A~r~----~~~~It~~dl 408 (612)
+++++..|......+ +...++.+|+
T Consensus 243 vrn~ve~~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 243 VRNALDRARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999999887654433 2234455543
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.84 E-value=3.7e-20 Score=192.42 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=156.9
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCcc---CceEEEEcCCCChHHHHHHHHHHHc---C----CCeeEEecccc
Q 007214 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF---VRGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGAEF 240 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~---p~gvLL~GPPGTGKT~LAralA~e~---g----~~~i~vs~s~~ 240 (612)
++++|.+++|+.+.+++.++..+..+.+.|... ..+++|+||||||||++|+++|+.+ | .++++++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 368999999999999999998888888888764 3489999999999999999998865 2 37999999888
Q ss_pred cch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 241 ~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
... .+.....++.+|+.|. +++|||||+|.+.+.+ ...+.....++.|+..|+... .+++||+|
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~-~~~~~~~~~~~~Ll~~le~~~-----------~~~~vI~a 166 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPD-NERDYGQEAIEILLQVMENQR-----------DDLVVILA 166 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCC-CccchHHHHHHHHHHHHhcCC-----------CCEEEEEe
Confidence 765 3555567788888773 4799999999996432 222334556788888887532 24788888
Q ss_pred cCCC--C---CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC-HHHHHHh------cCC-CcHHHHHH
Q 007214 320 TNRP--D---ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFR------TVG-FSGADIRN 386 (612)
Q Consensus 320 TN~p--~---~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~------t~G-~sgadL~~ 386 (612)
++.. + .++|+|.+ ||+..|+||+++.+++.+|++.++++....-+.+ +..+... .+. -++++++|
T Consensus 167 ~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn 244 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRN 244 (284)
T ss_pred CCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 7643 2 24899999 9999999999999999999999987653221111 2333322 122 25899999
Q ss_pred HHHHHHHHHHH
Q 007214 387 LVNESGIMSVR 397 (612)
Q Consensus 387 lv~~A~~~A~r 397 (612)
++..|......
T Consensus 245 ~ve~~~~~~~~ 255 (284)
T TIGR02880 245 AIDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHHH
Confidence 99988765554
No 46
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.5e-19 Score=198.57 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=161.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC----CCeeEEecccccchh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g----~~~i~vs~s~~~~~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
..+.++||+||+|||||.|+++++.++. .++..++|+.+.... ....+.++.+|..|..++|+||++|++|++.+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3456799999999999999999999874 457789999988773 44566799999999999999999999999987
Q ss_pred cCCC---CChhHHHHHHHHHHHh-cCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHH
Q 007214 277 RHAR---KDPRRRATFEALIAQL-DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (612)
Q Consensus 277 ~~~~---~~~~~~~~l~~LL~~l-d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~ 352 (612)
.... ......+.++.+++.+ +.+... +..+.|||+.+....|+|-|.+|++|+.++.++.|+..+|.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~--------~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKR--------NRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHcc--------CcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 3222 2233344455555332 222221 234799999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHHH
Q 007214 353 IFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 353 Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~----~~~~It~~dl~~Al~~~~ 416 (612)
||+..+.+.... ..-|++.++..|+||...||..++.+|...|... +.+.++.+++.+++..-+
T Consensus 581 IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 581 ILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 999888766532 1124555999999999999999999998888732 223678899999987654
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=4.3e-19 Score=175.19 Aligned_cols=201 Identities=21% Similarity=0.261 Sum_probs=129.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
.-.+.+|+|++||+++++.+.-++...+.. .....++|||||||+|||+||+.+|++++.+|...+++.+...
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 345789999999999999998887765432 1245689999999999999999999999999999988665432
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc----CC--ccccc-ccccEEE
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER----TG--IDRFS-LRQAVIF 316 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~----~~--~~~~~-~~~~ViV 316 (612)
. .+..++...+ ...||||||||.+.. .....|+..|+.+.-. .+ ..... .-.++.+
T Consensus 90 ~-----dl~~il~~l~--~~~ILFIDEIHRlnk----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 G-----DLAAILTNLK--EGDILFIDEIHRLNK----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp H-----HHHHHHHT----TT-EEEECTCCC--H----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred H-----HHHHHHHhcC--CCcEEEEechhhccH----------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 1 2333444333 347999999999842 2445677777765421 11 00011 1145899
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCcc-CCHHHHHHhcCCCcHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFSGADIRNLVNES 391 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~sgadL~~lv~~A 391 (612)
|+||++...|.+.|+. ||....++..++.++..+|++.......+.-+ ....++|+++.| +|+-..++++.+
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999977665544322 236788988887 677666666643
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.79 E-value=3e-18 Score=181.69 Aligned_cols=223 Identities=20% Similarity=0.212 Sum_probs=161.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
+..+.+|++++|+++.++.+..++...+.+ ..++.++||+||||||||++|+++|++++.++..++++.+...
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 345679999999999999988887654332 2356789999999999999999999999999888776654322
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc----CC----cccccccccEE
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER----TG----IDRFSLRQAVI 315 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~----~~----~~~~~~~~~Vi 315 (612)
..+..++... ..++||||||+|.+... .. +.+...|+..... .+ ..+.. ..++.
T Consensus 91 -----~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~-l~~~~ 152 (328)
T PRK00080 91 -----GDLAAILTNL--EEGDVLFIDEIHRLSPV-------VE---EILYPAMEDFRLDIMIGKGPAARSIRLD-LPPFT 152 (328)
T ss_pred -----HHHHHHHHhc--ccCCEEEEecHhhcchH-------HH---HHHHHHHHhcceeeeeccCccccceeec-CCCce
Confidence 1234444433 34689999999998421 11 2233333322100 00 00001 12478
Q ss_pred EEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCc-cCCHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007214 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~sgadL~~lv~~A~~~ 394 (612)
+|++||++..++++|++ ||...+.+++|+.+++.+|++..+......- +..+..|+..+.| +++.+.++++.+...
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDF 229 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHH
Confidence 89999999999999988 9999999999999999999998776544332 2236788888777 568889999988888
Q ss_pred HHHhCCCCccHHHHHHHHHH
Q 007214 395 SVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 395 A~r~~~~~It~~dl~~Al~~ 414 (612)
|..++...|+.+++..+++.
T Consensus 230 a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 230 AQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHcCCCCCCHHHHHHHHHH
Confidence 87776778999999988865
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-18 Score=193.71 Aligned_cols=216 Identities=39% Similarity=0.615 Sum_probs=190.0
Q ss_pred hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhcCCeEEEE
Q 007214 190 MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFV 268 (612)
Q Consensus 190 l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfI 268 (612)
+..+..+..++..++++++++||||||||++++++|.+ +.++..+++.+.... .+....+.+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788889999999999999999999999999999 766688888888777 5778889999999999999999999
Q ss_pred ccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCH
Q 007214 269 DEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDA 347 (612)
Q Consensus 269 DEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~ 347 (612)
||+|.+.+++.. ..........+++..+++.. . .. +++++.||++..+|+++++||||++.+.+..|+.
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~--------~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-R--------GQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhccccc-C--------Cc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 999999887655 23344577889999999876 2 24 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC------CCCccHHHHHHHHHHHH
Q 007214 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG------HSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~------~~~It~~dl~~Al~~~~ 416 (612)
..+.+|+..+........+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++.
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~ 227 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVL 227 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcC
Confidence 9999999999988888888999999999999999999999999999988875 23578899999998864
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=7.3e-18 Score=176.58 Aligned_cols=219 Identities=18% Similarity=0.227 Sum_probs=155.0
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhh
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSG 247 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~ 247 (612)
.+|+|++|++++++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++..++++......
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~--- 70 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPG--- 70 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCch---
Confidence 37999999999998888777543322 13467899999999999999999999999988777655433211
Q ss_pred HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc--------CCcccccccccEEEEEe
Q 007214 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER--------TGIDRFSLRQAVIFICA 319 (612)
Q Consensus 248 ~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~--------~~~~~~~~~~~ViVIaa 319 (612)
.+...+... ..+.+|||||+|.+... ....|+..|+..... ...... ...++++|++
T Consensus 71 --~l~~~l~~~--~~~~vl~iDEi~~l~~~----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~li~~ 135 (305)
T TIGR00635 71 --DLAAILTNL--EEGDVLFIDEIHRLSPA----------VEELLYPAMEDFRLDIVIGKGPSARSVRL-DLPPFTLVGA 135 (305)
T ss_pred --hHHHHHHhc--ccCCEEEEehHhhhCHH----------HHHHhhHHHhhhheeeeeccCccccceee-cCCCeEEEEe
Confidence 122233222 34679999999998421 122344444332211 000001 1234789999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..+++.+.| +++.+.++++.+...|...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVR 212 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHc
Confidence 9999999999998 999999999999999999999877644332 22236788888777 5577888999887777666
Q ss_pred CCCCccHHHHHHHHHH
Q 007214 399 GHSKIQQQDIVDVLDK 414 (612)
Q Consensus 399 ~~~~It~~dl~~Al~~ 414 (612)
+...|+.+++..+++.
T Consensus 213 ~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 213 GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 6677999999988876
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.7e-17 Score=166.97 Aligned_cols=225 Identities=19% Similarity=0.186 Sum_probs=170.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~ 244 (612)
-.+.+|+|.+|++++|+.|+-++..-+.. .....++|||||||.|||+||+-+|+|+|+++-..++..+....
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 34788999999999999999988875544 24567899999999999999999999999999999888776543
Q ss_pred hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc------ccc-ccccEEEE
Q 007214 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID------RFS-LRQAVIFI 317 (612)
Q Consensus 245 ~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~------~~~-~~~~ViVI 317 (612)
.+-.++.....+ .||||||||.+.+. +-.-|...|+.+.-.--++ ... .-.++.+|
T Consensus 93 -----DlaaiLt~Le~~--DVLFIDEIHrl~~~----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 93 -----DLAAILTNLEEG--DVLFIDEIHRLSPA----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred -----hHHHHHhcCCcC--CeEEEehhhhcChh----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 233444444333 69999999999532 2233444555543221100 000 12458999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCcc-CCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
+||.+...|...|+. ||....++..++.++..+|++.......+.-+ ....++|+++.| +|+--..|+++..-.|.
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQ 232 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHH
Confidence 999999999999998 99999999999999999999987765544322 236788998887 77777788998888898
Q ss_pred HhCCCCccHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (612)
-++...|+.+-..+|++...
T Consensus 233 V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HhcCCcccHHHHHHHHHHhC
Confidence 88989999888888887653
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=1e-17 Score=188.01 Aligned_cols=222 Identities=20% Similarity=0.261 Sum_probs=149.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCe
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPF 232 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~ 232 (612)
++..+.+|++++|++...+.+... +.. +.+.++||+||||||||++|+++..++ +.+|
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~a---l~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAA---LCG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHH---HhC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 467889999999999776666533 221 245689999999999999999997642 4689
Q ss_pred eEEecccc--cchh------hh-------hHH---------HHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHH
Q 007214 233 VFASGAEF--TDSE------KS-------GAA---------RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRAT 288 (612)
Q Consensus 233 i~vs~s~~--~~~~------~~-------~~~---------~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~ 288 (612)
+.++|... .+.. +. +.. .....+.. ....+|||||+|.+.. ..
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~----------~~ 191 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHP----------VQ 191 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCH----------HH
Confidence 99998642 1110 00 000 00011222 2346999999999842 24
Q ss_pred HHHHHHHhcCCcccC------Ccc-----------cccccccEEEE-EecCCCCCccccccCCCceeEEEEeCCCCHHHH
Q 007214 289 FEALIAQLDGDKERT------GID-----------RFSLRQAVIFI-CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQR 350 (612)
Q Consensus 289 l~~LL~~ld~~~~~~------~~~-----------~~~~~~~ViVI-aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR 350 (612)
++.|+..|+...... +.+ ....+.++.+| +|||.|+.+++++++ |+ ..+.+++++.+++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei 268 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHH
Confidence 566666664321100 000 00112334454 556789999999998 88 5788999999999
Q ss_pred HHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 351 VQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 351 ~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
.+|++..+++..+. ++..++.++..+ .+++++.|+++.|+..|..+++..|+.+|+..++..
T Consensus 269 ~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 269 KEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 99999888765432 122255566554 389999999999999998888888999999998753
No 53
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.2e-18 Score=173.38 Aligned_cols=232 Identities=22% Similarity=0.349 Sum_probs=163.8
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcC-----CccCceEEEEcCCCChHHHHHHHHHHHcCC---------Cee
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG-----VQFVRGVLLSGPPGTGKTLFARTLAKESGL---------PFV 233 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g-----~~~p~gvLL~GPPGTGKT~LAralA~e~g~---------~~i 233 (612)
--|+.++-...+|+.|-..+.. ...|.+.+ +...|-+|||||||||||+|+||+|+.+.+ .++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s---~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAAS---ALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHH---HHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 3466777667788776554432 22333333 345677999999999999999999998743 478
Q ss_pred EEecccccch-hhhhHHHHHHHHHHHhh---cCC--eEEEEccchhhhccCC-----CCChhHHHHHHHHHHHhcCCccc
Q 007214 234 FASGAEFTDS-EKSGAARINEMFSIARR---NAP--AFVFVDEIDAIAGRHA-----RKDPRRRATFEALIAQLDGDKER 302 (612)
Q Consensus 234 ~vs~s~~~~~-~~~~~~~ir~lF~~A~~---~~P--~ILfIDEiD~l~~~~~-----~~~~~~~~~l~~LL~~ld~~~~~ 302 (612)
.+++..+.+. +.+..+.+..+|++... ... ..++|||+++++..|. +.....-+++|++|++||.....
T Consensus 216 EinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 216 EINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred EEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC
Confidence 8999888777 56777778888876653 122 3578999999986542 22233457899999999997765
Q ss_pred CCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC-----CCC--------ccC--
Q 007214 303 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-----QLA--------EDV-- 367 (612)
Q Consensus 303 ~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-----~l~--------~dv-- 367 (612)
+ +|++++|+|..+.||.|+.. |-|-+.++++|+...+.+|++.++... -+. ..+
T Consensus 296 ~---------NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~ 364 (423)
T KOG0744|consen 296 P---------NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKY 364 (423)
T ss_pred C---------CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHh
Confidence 4 59999999999999999999 999999999999999999999765321 000 111
Q ss_pred ---CHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 368 ---NFEELVFR-TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 368 ---dl~~La~~-t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
....+... +.|.||+.|+.|=--|... --....|+.+++..|+-..
T Consensus 365 ~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~--y~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 365 QKALRNILIELSTVGLSGRTLRKLPLLAHAE--YFRTFTVDLSNFLLALLEA 414 (423)
T ss_pred hHhHHHHHHHHhhcCCccchHhhhhHHHHHh--ccCCCccChHHHHHHHHHH
Confidence 11222222 6899999998875433321 1123478888888776543
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=5e-17 Score=189.26 Aligned_cols=222 Identities=20% Similarity=0.249 Sum_probs=156.0
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEE
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~v 235 (612)
.+-.+++++|.++. +..++..|... ...+++|+||||||||++|+++|.++ +.+++.+
T Consensus 177 r~~~l~~~igr~~e---i~~~~~~L~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDE---LERTIQVLCRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHH---HHHHHHHHhcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 45678999998854 44455554433 34579999999999999999999987 6778899
Q ss_pred ecccccch---hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 236 SGAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 236 s~s~~~~~---~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
+++.+... .+....+++.+|+.++...|+||||||+|.+.+.+...+.. ....+.|...|.. .
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~-~~~~~~L~~~l~~-------------g 310 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS-MDASNLLKPALSS-------------G 310 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc-HHHHHHHHHHHhC-------------C
Confidence 98887642 35677899999999988889999999999997653221111 1123334444432 2
Q ss_pred cEEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC----CC-CccCCHHHHHHhcCCCc--
Q 007214 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK----QL-AEDVNFEELVFRTVGFS-- 380 (612)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~----~l-~~dvdl~~La~~t~G~s-- 380 (612)
.+.+|++||..+ ..|+||.| ||. .|+++.|+.+++.+|++...... .+ -.+..+..++..+..|-
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 388999998643 57999999 996 79999999999999999655431 11 12233566666655543
Q ss_pred ---HHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHHH
Q 007214 381 ---GADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 381 ---gadL~~lv~~A~~~A~r~----~~~~It~~dl~~Al~~~~ 416 (612)
|.---.++++|+.....+ ....|+.+|+.+++.+..
T Consensus 388 r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 388 RFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred ccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 344456777776544322 134599999999998753
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=1.3e-16 Score=186.80 Aligned_cols=171 Identities=23% Similarity=0.243 Sum_probs=122.1
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch--------
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-------- 243 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-------- 243 (612)
++.|++++|+.+.+.+...+.. +...+..+||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4778888888887765532211 11223479999999999999999999999999999987654321
Q ss_pred --hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc----ccccccEEEE
Q 007214 244 --EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR----FSLRQAVIFI 317 (612)
Q Consensus 244 --~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~----~~~~~~ViVI 317 (612)
.+....++...|..+....| ||||||||.+.+... ++ ..+.|+..||......-.+. -...+++++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-GD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-CC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 12223456777888776666 789999999974321 11 24667777764211110010 0112468999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHh
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l 358 (612)
+|||.++.++++|++ ||+ .|+++.|+.+++.+|++.++
T Consensus 468 ~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 999999999999999 995 78999999999999998876
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=7.2e-17 Score=169.31 Aligned_cols=205 Identities=23% Similarity=0.326 Sum_probs=140.8
Q ss_pred cCCcccccceecCcccH---HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVW---DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k---~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
.-.+.+|+|++||++.- ..|..+++. ....+++||||||||||++|+.+|+..+.+|..+|...
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~- 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT- 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-
Confidence 34578999999998754 344444432 23457999999999999999999999999999887543
Q ss_pred cchhhhhHHHHHHHHHHHhhcC----CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 241 TDSEKSGAARINEMFSIARRNA----PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 241 ~~~~~~~~~~ir~lF~~A~~~~----P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.+.+.++.+++.|++.. ..||||||||.+... .+..||-.++.. .|++
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~----------QQD~lLp~vE~G-------------~iil 135 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA----------QQDALLPHVENG-------------TIIL 135 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh----------hhhhhhhhhcCC-------------eEEE
Confidence 34557999999996533 589999999998421 235677776642 2788
Q ss_pred EEec--CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc--CCCCC------ccCCHHHHHHhcCCCcHHHHHH
Q 007214 317 ICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLA------EDVNFEELVFRTVGFSGADIRN 386 (612)
Q Consensus 317 IaaT--N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~------~dvdl~~La~~t~G~sgadL~~ 386 (612)
|+|| |..-.+.+||++ |. +.+.+.+.+.++..++++.-+. ...+. ++.-+..++..+.| |.+.
T Consensus 136 IGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~ 208 (436)
T COG2256 136 IGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARR 208 (436)
T ss_pred EeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHH
Confidence 8776 555689999999 87 6889999999999999987332 22222 12124556666555 6666
Q ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHHH
Q 007214 387 LVNESGIMSVRKG-HSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 387 lv~~A~~~A~r~~-~~~It~~dl~~Al~~~~ 416 (612)
++|..-+.+.... ...++.+++.+.+.+..
T Consensus 209 aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 209 ALNLLELAALSAEPDEVLILELLEEILQRRS 239 (436)
T ss_pred HHHHHHHHHHhcCCCcccCHHHHHHHHhhhh
Confidence 6664433332221 11344777777766643
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.71 E-value=2.3e-16 Score=182.55 Aligned_cols=221 Identities=18% Similarity=0.207 Sum_probs=149.9
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---C-------CCeeEEe
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---G-------LPFVFAS 236 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g-------~~~i~vs 236 (612)
.-.++.++|.++ +++.++..+... .+.++||+||||||||++|+++|... + ..++.++
T Consensus 182 ~g~~~~liGR~~---ei~~~i~iL~r~---------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREK---ELERAIQVLCRR---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCH---HHHHHHHHHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 345778888873 455555544432 34578999999999999999999764 3 3445555
Q ss_pred cccccch---hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 007214 237 GAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (612)
Q Consensus 237 ~s~~~~~---~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (612)
...+... .+....+++.+|..+.+..++||||||+|.+.+.+.... ......|.|...+.. ..
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~-g~~d~~nlLkp~L~~-------------g~ 315 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-GQVDAANLIKPLLSS-------------GK 315 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC-cHHHHHHHHHHHHhC-------------CC
Confidence 4444421 245677899999998888899999999999986543211 111222222222221 23
Q ss_pred EEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHH-----HHh-----cCC
Q 007214 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEEL-----VFR-----TVG 378 (612)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~L-----a~~-----t~G 378 (612)
+.+|+|||.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+........++++.+. +.. +..
T Consensus 316 i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r 392 (758)
T PRK11034 316 IRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_pred eEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCc
Confidence 89999999865 57999999 995 7999999999999999977655444444443222 222 334
Q ss_pred CcHHHHHHHHHHHHHHHH----HhCCCCccHHHHHHHHHHHH
Q 007214 379 FSGADIRNLVNESGIMSV----RKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 379 ~sgadL~~lv~~A~~~A~----r~~~~~It~~dl~~Al~~~~ 416 (612)
+-|...-.++.+|+.... ......|+.+|+.+.+.+..
T Consensus 393 ~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 393 HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred cChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 556788889999886442 12344688899988887754
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=99.69 E-value=5.7e-16 Score=172.55 Aligned_cols=209 Identities=21% Similarity=0.295 Sum_probs=145.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+++.+.+|+|++|++++++.|...+....+. .+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 3677889999999999888887776533221 34789999999999999999999999999999999887553
Q ss_pred hhhhhHHHHHHHHHHHhh------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 243 SEKSGAARINEMFSIARR------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 243 ~~~~~~~~ir~lF~~A~~------~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .++.+...+.. ..+.+|+|||+|.+.++. ....++.|+..++... ..+
T Consensus 78 ~~-----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~~~-------------~~i 133 (482)
T PRK04195 78 AD-----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKKAK-------------QPI 133 (482)
T ss_pred HH-----HHHHHHHHhhccCcccCCCCeEEEEecCccccccc------chhHHHHHHHHHHcCC-------------CCE
Confidence 21 22222222221 246899999999985421 1224556666665311 346
Q ss_pred EEecCCCCCccc-cccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDL-EFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 317 IaaTN~p~~LD~-aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~ 394 (612)
|++||.+..+++ .+++ | ...|.|+.|+..+...+++..+....+. ++..+..|+..+.| |++.+++.....
T Consensus 134 Ili~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~ 206 (482)
T PRK04195 134 ILTANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAI 206 (482)
T ss_pred EEeccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH
Confidence 667888888877 5544 4 4789999999999999999887654432 22346777877644 888888876653
Q ss_pred HHHhCCCCccHHHHHHHH
Q 007214 395 SVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 395 A~r~~~~~It~~dl~~Al 412 (612)
+ .+...|+.+++....
T Consensus 207 a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 207 A--EGYGKLTLEDVKTLG 222 (482)
T ss_pred h--cCCCCCcHHHHHHhh
Confidence 3 345567777765443
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.3e-15 Score=168.21 Aligned_cols=205 Identities=18% Similarity=0.255 Sum_probs=141.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~------------- 230 (612)
+..+.+|+|++|++++++.|...+. +. +.|.++||+||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~---~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK---KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 5678899999999988777766443 33 35678999999999999999999998764
Q ss_pred -----------CeeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 231 -----------~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
.++.++++. ..+...++.+.+.+.. ....||||||+|.+.. ..++.|+..
T Consensus 76 ~c~~i~~g~~~dv~el~aa~-----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------~a~~~LLk~ 140 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS-----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------EAFNALLKT 140 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc-----cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH----------HHHHHHHHH
Confidence 233333321 1223446665555442 2346999999999842 246778888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
++... ..+++|++|+.+..+++++++ |+ ..+.+.+|+.++...+++..+....+. ++..+..|+.
T Consensus 141 LE~p~-----------~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 141 LEEPP-----------SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred HHhCC-----------CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77532 236777777778899999998 88 589999999999999998776543321 2223677887
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
.+.| +.+++-+.+..+... .+ ..|+.+++.+++.
T Consensus 207 ~s~G-dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 207 RASG-GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred HhCC-CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 7654 555555555543322 22 3499999887764
No 60
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.67 E-value=1.6e-15 Score=165.94 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=141.4
Q ss_pred cCCcccccceecCcccHHH---HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVWDL---LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~---L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
+..+.+|+|++|++++... |..++ ... .+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i---~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMI---EAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHH---HcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 4567889999999977554 54444 222 23479999999999999999999999999999987642
Q ss_pred cchhhhhHHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 241 TDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 241 ~~~~~~~~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
+...++.+++.+. .....||||||+|.+.. ...+.|+..++.. .+++
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~----------~~q~~LL~~le~~-------------~iil 123 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK----------AQQDALLPHVEDG-------------TITL 123 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH----------HHHHHHHHHhhcC-------------cEEE
Confidence 2234555666553 23568999999998842 2345666666541 2566
Q ss_pred EEec--CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC-----CCCccCCHHHHHHhcCCCcHHHHHHHHH
Q 007214 317 ICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-----QLAEDVNFEELVFRTVGFSGADIRNLVN 389 (612)
Q Consensus 317 IaaT--N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-----~l~~dvdl~~La~~t~G~sgadL~~lv~ 389 (612)
|++| |....+++++++ |+ ..+.+++|+.++...+++..+... .+. +..+..+++.+.| ..+.+.+++.
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le 198 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLE 198 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHH
Confidence 6655 334578999998 88 789999999999999998766432 222 2225677777644 5666666666
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 390 ESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 390 ~A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
.+... ...|+.+++.+++...
T Consensus 199 ~~~~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 199 LAALG-----VDSITLELLEEALQKR 219 (413)
T ss_pred HHHHc-----cCCCCHHHHHHHHhhh
Confidence 55433 4569999998888764
No 61
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.66 E-value=4.5e-15 Score=159.18 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=142.5
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC---------CCeeEEecccc
Q 007214 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAEF 240 (612)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g---------~~~i~vs~s~~ 240 (612)
.++++|.++..+.|...+..... | ..+.+++|+||||||||++++++++++. +++++++|...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~-------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR-------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 35788887554444443332111 1 3456799999999999999999987652 57888998765
Q ss_pred cchhhh---------------------hHHHHHHHHHHHh-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 241 TDSEKS---------------------GAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 241 ~~~~~~---------------------~~~~ir~lF~~A~-~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
...... ....+..++.... ...+.||+|||+|.+.+. . ...+..|+...+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----~---~~~L~~l~~~~~~ 158 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----D---DDLLYQLSRARSN 158 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----C---cHHHHhHhccccc
Confidence 432100 0112344444443 345789999999999622 1 1234444433111
Q ss_pred CcccCCcccccccccEEEEEecCCCC---CccccccCCCcee-EEEEeCCCCHHHHHHHHHHHhcCC----CCCccCCHH
Q 007214 299 DKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAGK----QLAEDVNFE 370 (612)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd-~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~ 370 (612)
... ...++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+... .+.++ .+.
T Consensus 159 ~~~--------~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~-~l~ 227 (365)
T TIGR02928 159 GDL--------DNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG-VIP 227 (365)
T ss_pred cCC--------CCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh-HHH
Confidence 110 123588999999876 57788877 774 679999999999999999877521 12221 122
Q ss_pred ---HHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 371 ---ELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 371 ---~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
.++..+.| ..+...++|+.|...|..++...|+.+|+.+|++..
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 33444445 455566788899999988888899999999998875
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.3e-15 Score=164.62 Aligned_cols=210 Identities=16% Similarity=0.213 Sum_probs=145.3
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCe-------eE-
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-------VF- 234 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~-------i~- 234 (612)
.+..+.+|+||+|++.+...|...+. +. +.+..+||+||||||||++|+.+|+.++..- ..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~---~~--------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALK---SG--------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 36778999999999988777665543 22 3556799999999999999999999886521 00
Q ss_pred --------Eecccccch---hhhhHHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007214 235 --------ASGAEFTDS---EKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 235 --------vs~s~~~~~---~~~~~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~ 299 (612)
-...++.+. ...+...+|.+.+.+. .....|+||||+|.+. ...+|.||..|+..
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls----------~~A~NALLKtLEEP 148 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT----------DQSFNALLKTLEEP 148 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC----------HHHHHHHHHHhhcC
Confidence 000111111 1123344566555443 2345799999999994 23678899888653
Q ss_pred cccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCC
Q 007214 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (612)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (612)
. ..+++|++|+.++.|.+++++ |+ ..+.|..++.++-.+.++..+....+. .+..+..|++.+.|
T Consensus 149 p-----------~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 149 P-----------AHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred C-----------CceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2 347888899999999999999 88 578899999888888888777654432 23346778877666
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 379 ~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+.+|.-+++..+... ....|+.+++.+.+
T Consensus 215 -d~RdAL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 215 -SVRDMLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred -hHHHHHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 677877888765533 22358877775543
No 63
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.65 E-value=4.1e-15 Score=162.20 Aligned_cols=221 Identities=19% Similarity=0.266 Sum_probs=143.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEeccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~ 239 (612)
.+..+|++.+..++-......+..+..+| .....+++||||||||||+|++++++++ +..++++++.+
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 35678999554444444444444444444 1234579999999999999999999876 67899999888
Q ss_pred ccchhhhhH--HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 240 ~~~~~~~~~--~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
+........ ..+..+.+..+ .+.+|+|||+|.+.++. .....+..+++.+.. .. ..+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----~~~~~l~~~~n~~~~---~~---------~~iii 237 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE-----RTQEEFFHTFNALHE---NG---------KQIVL 237 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH-----HHHHHHHHHHHHHHH---CC---------CCEEE
Confidence 765422111 11222222222 35799999999985431 112223333333221 11 13555
Q ss_pred EecCCCCC---ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHH
Q 007214 318 CATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (612)
Q Consensus 318 aaTN~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A 391 (612)
++++.|.. +++.+.+ ||. ..+.+++|+.++|.+|++..+....+. ++..++.||.+..+ +.++|..+++..
T Consensus 238 ts~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l 314 (405)
T TIGR00362 238 TSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRL 314 (405)
T ss_pred ecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 55555554 5678887 996 479999999999999999887655433 22336777876554 789999999988
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHH
Q 007214 392 GIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
...|...+ ..||.+.+.+++...
T Consensus 315 ~~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 315 LAYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHh
Confidence 87776555 569998888887654
No 64
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.65 E-value=3.3e-15 Score=165.16 Aligned_cols=220 Identities=17% Similarity=0.260 Sum_probs=147.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEeccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~ 239 (612)
.++.+|++.+..+..+.....+..+..+|. ....+++||||||||||+|++++|+++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 456799997655555555555555555541 234579999999999999999999887 56788999988
Q ss_pred ccchhhhhH--HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 240 ~~~~~~~~~--~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
|........ .....+.+..+ .+.+|+|||+|.+.++. .....+..+++.+.. .. ..+||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----~~~~~l~~~~n~l~~---~~---------~~iii 249 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE-----RTQEEFFHTFNALHE---AG---------KQIVL 249 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH-----HHHHHHHHHHHHHHH---CC---------CcEEE
Confidence 765432111 11222222222 46799999999985431 112223333333221 11 13555
Q ss_pred EecCCCCC---ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCC--CCccCCHHHHHHhcCCCcHHHHHHHHHH
Q 007214 318 CATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNE 390 (612)
Q Consensus 318 aaTN~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~~t~G~sgadL~~lv~~ 390 (612)
+++..|.. +++.+.+ ||. ..+.+.+|+.++|.+|++..+.... +.++ .++.||....| +.++|..+++.
T Consensus 250 ts~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ia~~~~~-~~R~l~~~l~~ 325 (450)
T PRK00149 250 TSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE-VLEFIAKNITS-NVRELEGALNR 325 (450)
T ss_pred ECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHcCcCC-CHHHHHHHHHH
Confidence 55555554 6788888 995 5899999999999999998876543 3333 36777777554 88999999998
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 391 SGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
....|...+ ..|+.+.+.+++...
T Consensus 326 l~~~~~~~~-~~it~~~~~~~l~~~ 349 (450)
T PRK00149 326 LIAYASLTG-KPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 877776655 459999998888765
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.1e-15 Score=168.67 Aligned_cols=208 Identities=17% Similarity=0.243 Sum_probs=144.9
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------- 231 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~----------- 231 (612)
.++.+.+|+||+|++++++.|...+. +. +.+..+||+||+|||||++|+.+|+.++..
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~---~g--------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALE---QQ--------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHH---hC--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 35778999999999998887776654 22 456789999999999999999999988751
Q ss_pred -eeEE-ec--------ccccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 007214 232 -FVFA-SG--------AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (612)
Q Consensus 232 -~i~v-s~--------s~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~ 294 (612)
.-.+ +| .++.+. ...+...++++.+.+.. ....|++|||+|.|. ....|.||+
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------~~AaNALLK 146 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------NHAFNAMLK 146 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC----------HHHHHHHHH
Confidence 0000 01 112111 11233456666665432 335799999999994 236789999
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCcc-CCHHHHH
Q 007214 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELV 373 (612)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La 373 (612)
.|+.-. .++++|.+||.++.|.+.+++ |+ ..+.|..++.++..+.++..+....+..+ ..+..|+
T Consensus 147 TLEEPP-----------~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 147 TLEEPP-----------EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred hhccCC-----------CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 887633 347888889999999999998 88 78999999999999988877655443322 2256677
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~ 410 (612)
+.+.| +.++..+++.++... +...|+.+++.+
T Consensus 213 ~~A~G-s~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 213 QAAQG-SMRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred HHcCC-CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 77655 788888888765532 233466655443
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.3e-15 Score=159.10 Aligned_cols=211 Identities=17% Similarity=0.275 Sum_probs=144.5
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeE--Eec---
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF--ASG--- 237 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~--vs~--- 237 (612)
++..+.+|+||+|++++++.+...+. .. +.|..+||+||||||||++|+++|++++..... -.|
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~---~~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLS---LG--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHH---cC--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 35678999999999988887765553 21 356789999999999999999999988642100 001
Q ss_pred -----------ccccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007214 238 -----------AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 238 -----------s~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~ 299 (612)
.++... .......++.+.+.+.. ....|++|||+|.+. ....+.|+..++..
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~----------~~a~naLLk~lEe~ 146 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS----------RHSFNALLKTLEEP 146 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC----------HHHHHHHHHHHhcC
Confidence 011111 01223446666655432 234699999999883 23567788888763
Q ss_pred cccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCC
Q 007214 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (612)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (612)
. ..+.+|.+|+.++.+.+++++ |+ ..+++++|+.++..++++..++..... ++..+..++..+.|
T Consensus 147 ~-----------~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 147 P-----------QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred C-----------CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3 235677777888889989887 87 689999999999999998877654422 22346667777655
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 007214 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 379 ~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
+++++.+++..+... +...|+.+++.+++.
T Consensus 213 -~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 213 -SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred -CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 777777777765432 456799988877653
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=99.64 E-value=2.4e-15 Score=159.00 Aligned_cols=202 Identities=17% Similarity=0.223 Sum_probs=133.5
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-----CeeEEec
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-----PFVFASG 237 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-----~~i~vs~ 237 (612)
+++.+.+|+|++|++++.+.|+.++. +. .. .++|||||||||||++|+++|+++.. .++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~---~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIAR---DG--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHh---cC--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 46788999999999988777766543 22 12 25999999999999999999998732 3555555
Q ss_pred ccccchhhhhHHHHHHHHHH---Hh----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 007214 238 AEFTDSEKSGAARINEMFSI---AR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (612)
Q Consensus 238 s~~~~~~~~~~~~ir~lF~~---A~----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~ 310 (612)
++... ...++..... .. ...+.|++|||+|.+.. ...+.|+..|+.....
T Consensus 73 sd~~~-----~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------~aq~aL~~~lE~~~~~-------- 129 (319)
T PLN03025 73 SDDRG-----IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------GAQQALRRTMEIYSNT-------- 129 (319)
T ss_pred ccccc-----HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH----------HHHHHHHHHHhcccCC--------
Confidence 44321 1223333222 11 12357999999999842 2346666666543322
Q ss_pred cccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHH
Q 007214 311 RQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVN 389 (612)
Q Consensus 311 ~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~ 389 (612)
..+|.+||.+..+.+++++ |+ ..++++.|+.++..+.++..++...+. ++..+..++..+.| |++.+++
T Consensus 130 ---t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln 199 (319)
T PLN03025 130 ---TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALN 199 (319)
T ss_pred ---ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 3567788888888899988 87 589999999999999998777654332 23346777766544 5555555
Q ss_pred HHHHHHHHhCCCCccHHHHHHH
Q 007214 390 ESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 390 ~A~~~A~r~~~~~It~~dl~~A 411 (612)
.....+ .+...|+.+++.+.
T Consensus 200 ~Lq~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 200 NLQATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHHHH--hcCCCCCHHHHHHH
Confidence 443222 23456888776543
No 68
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=5e-15 Score=167.53 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=145.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCe--eEEecc--
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF--VFASGA-- 238 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~--i~vs~s-- 238 (612)
+++.+.+|+||+|++++++.|...++ .. +.+..+||+||+|||||++++++|+.+++.- -...|.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~---~g--------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD---GG--------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 46778999999999988887766543 22 4567889999999999999999999886421 000111
Q ss_pred ------------cccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007214 239 ------------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 239 ------------~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~ 299 (612)
++.+. ...+...++.+.+.+.. ....|+||||+|.|.. ...|.||..|+..
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~----------~A~NALLKtLEEP 146 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN----------HAFNAMLKTLEEP 146 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH----------HHHHHHHHHHHhc
Confidence 11111 11233456777766542 2347999999999842 3578899888764
Q ss_pred cccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCC
Q 007214 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (612)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (612)
. .++++|++||.++.|.+.+++ |+ .++.|..++.++..+.|+..+....+. ++..+..|++.+.|
T Consensus 147 P-----------~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 147 P-----------PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred C-----------CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3 247888999999999999998 88 789999999999999998877655433 22336777777766
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 007214 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (612)
Q Consensus 379 ~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~ 410 (612)
+.++.-+++.++.... ...|+.+++..
T Consensus 213 -smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 213 -SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred -CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 6677777777665332 23466665544
No 69
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=5.5e-15 Score=173.87 Aligned_cols=217 Identities=14% Similarity=0.164 Sum_probs=149.0
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEE
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~v 235 (612)
.+-++++++|.++ +++.++..+... ...+++|+||||||||++|+.+|... +.+++.+
T Consensus 182 r~~~ld~~iGr~~---ei~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDD---EIRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHH---HHHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4678999999985 467777665443 23478999999999999999999875 2457788
Q ss_pred ecccccch---hhhhHHHHHHHHHHHhh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 236 SGAEFTDS---EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 236 s~s~~~~~---~~~~~~~ir~lF~~A~~-~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
+.+.+... .+....+++.+|+.++. ..++||||||+|.+.+.+...+. ...-|.|+..+..
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~d~~n~Lkp~l~~------------- 314 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--GDAANLLKPALAR------------- 314 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--ccHHHHhhHHhhC-------------
Confidence 87776532 36667899999999875 46899999999999765432111 1122334333332
Q ss_pred ccEEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC-----CccCCHHHHHHhcCCCc-
Q 007214 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-----AEDVNFEELVFRTVGFS- 380 (612)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l-----~~dvdl~~La~~t~G~s- 380 (612)
..+.+|+||+..+ .+|+||.| ||. .|.++.|+.+++.+||+.+.+.... -.+..+..++..+.+|-
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 2388999998643 48999999 995 8999999999999998765543221 12334666777766653
Q ss_pred ----HHHHHHHHHHHHHHHHHh-CCCCccHHHHHHHH
Q 007214 381 ----GADIRNLVNESGIMSVRK-GHSKIQQQDIVDVL 412 (612)
Q Consensus 381 ----gadL~~lv~~A~~~A~r~-~~~~It~~dl~~Al 412 (612)
|.---.++.+|+.....+ ....+..+++...+
T Consensus 392 ~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 392 GRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 445557788887655433 33445555555444
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.6e-15 Score=165.68 Aligned_cols=204 Identities=19% Similarity=0.268 Sum_probs=145.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------- 231 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~----------- 231 (612)
.+..+.+|+||+|++.+++.|...+. + .+.+..+||+||||||||++|+++|+.++..
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~---~--------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE---R--------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 35678999999999998877766554 2 2456789999999999999999999988652
Q ss_pred -------------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 007214 232 -------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (612)
Q Consensus 232 -------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~ 294 (612)
++.+++++ ..+...+|.+...+.. ....|++|||+|.|.. ...+.|+.
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs-----~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----------~A~NALLK 140 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS-----RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----------HSFNALLK 140 (702)
T ss_pred HHHHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----------HHHHHHHH
Confidence 22232221 1223446666655432 3457999999998842 25678888
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHH
Q 007214 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (612)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (612)
.|+... ..+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++..+.++..+....+. .+..+..|+
T Consensus 141 tLEEPP-----------~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA 206 (702)
T PRK14960 141 TLEEPP-----------EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIA 206 (702)
T ss_pred HHhcCC-----------CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 887633 236777788888888888887 88 689999999999999988777655433 223367778
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
+.+.| +.+++.+++..+... +...|+.+++.+.
T Consensus 207 ~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 207 ESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred HHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 77655 777888877765432 3456888887654
No 71
>PRK06893 DNA replication initiation factor; Validated
Probab=99.63 E-value=1.3e-14 Score=146.40 Aligned_cols=212 Identities=11% Similarity=0.128 Sum_probs=129.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
-.+..+|++.+++++.. .+..+.... .. .....++||||||||||+|++|+|+++ +....+++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~------~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNF------ID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHh------hc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 45678999999877532 222222111 11 122358999999999999999999875 445556655322
Q ss_pred cchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 241 ~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
... ...+++..+ ...+|+|||++.+.++ ......+..+++.+... . ..++|++++
T Consensus 79 ~~~-------~~~~~~~~~--~~dlLilDDi~~~~~~-----~~~~~~l~~l~n~~~~~---~--------~~illits~ 133 (229)
T PRK06893 79 QYF-------SPAVLENLE--QQDLVCLDDLQAVIGN-----EEWELAIFDLFNRIKEQ---G--------KTLLLISAD 133 (229)
T ss_pred hhh-------hHHHHhhcc--cCCEEEEeChhhhcCC-----hHHHHHHHHHHHHHHHc---C--------CcEEEEeCC
Confidence 111 112233332 4579999999988532 22233444555544321 1 124455555
Q ss_pred CCCCCcc---ccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 321 NRPDELD---LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 321 N~p~~LD---~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
..|..++ +.|.+..++...+.++.|+.++|.+|++..+....+. ++.-+..|+++..| +.+.+.++++.....+.
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~ 212 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASL 212 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 5676554 7888822335689999999999999999777544332 22235677777654 77888888886654444
Q ss_pred HhCCCCccHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVL 412 (612)
Q Consensus 397 r~~~~~It~~dl~~Al 412 (612)
.++ ..||...+.+++
T Consensus 213 ~~~-~~it~~~v~~~L 227 (229)
T PRK06893 213 QAQ-RKLTIPFVKEIL 227 (229)
T ss_pred hcC-CCCCHHHHHHHh
Confidence 334 468888776654
No 72
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.62 E-value=9.1e-15 Score=154.80 Aligned_cols=208 Identities=19% Similarity=0.292 Sum_probs=134.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-----CCeeEEecc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-----~~~i~vs~s 238 (612)
++.+.+|++++|++++++.|..++. ++ ...++||+||||||||++|+++|+++. .++++++++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~---~~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVD---SP---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHh---CC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 5678899999999987777766543 22 123699999999999999999999873 457888887
Q ss_pred cccchh--------------hh-------hHHHHHHHHHHHhh-----cCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 007214 239 EFTDSE--------------KS-------GAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (612)
Q Consensus 239 ~~~~~~--------------~~-------~~~~ir~lF~~A~~-----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~L 292 (612)
++.... +. ....++.+...... ..+.+|+|||+|.+.. . ..+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-------~---~~~~L 145 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-------D---AQQAL 145 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-------H---HHHHH
Confidence 653211 00 11223333333322 2246999999998831 1 23445
Q ss_pred HHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHH
Q 007214 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEE 371 (612)
Q Consensus 293 L~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~ 371 (612)
...++..... ..+|.+|+.+..+.+.+.+ |+ ..+.+.+|+.++..++++..+....+. ++..+..
T Consensus 146 ~~~le~~~~~-----------~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~ 211 (337)
T PRK12402 146 RRIMEQYSRT-----------CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211 (337)
T ss_pred HHHHHhccCC-----------CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5555443221 3455566666677777877 76 578999999999999999877654432 2334677
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 007214 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 372 La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
++..+.| |++.+++.....+. +...||.+++.+++.
T Consensus 212 l~~~~~g----dlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 212 IAYYAGG----DLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHcCC----CHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 7777633 45555555544442 234699999877654
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.3e-14 Score=161.26 Aligned_cols=213 Identities=20% Similarity=0.306 Sum_probs=150.7
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCee---------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--------- 233 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i--------- 233 (612)
.+..+.+|+|++|++.+.+.|...+. . .+.+.++||+||||||||++|+++|+.++..--
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~---~--------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTIL---N--------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 36788999999999988777665443 1 245788999999999999999999998865210
Q ss_pred ---EEecc--------cccch---hhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 234 ---FASGA--------EFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 234 ---~vs~s--------~~~~~---~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
.-+|. ++.+. ...+...++.+.+.+... ...|++|||+|.+. ...++.|+..
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls----------~~a~naLLk~ 151 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS----------KGAFNALLKT 151 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC----------HHHHHHHHHH
Confidence 00111 11111 112345678887777532 34699999999884 2357788888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCc-cCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~ 374 (612)
|+... ..+++|++|+.++.+++++++ |+ ..+++..++.++..++++..++.....- +..+..|+.
T Consensus 152 LEepp-----------~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 152 LEEPP-----------PHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HhhcC-----------CCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77532 236777778888899999988 88 5789999999999999998887554432 223677888
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
.+.| +.+++.++++.+...+... ...|+.+++.+.+
T Consensus 218 ~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 218 KSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 7665 8889989998876654322 2358888876654
No 74
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.6e-15 Score=164.26 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=143.6
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------- 231 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~----------- 231 (612)
.++.+.+|+||+|++.+++.|...+.. . +.|..+||+||||||||++|+++|+.++..
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~---~--------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ---Q--------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh---C--------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 367789999999999888877665542 1 456789999999999999999999988652
Q ss_pred -------------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 007214 232 -------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (612)
Q Consensus 232 -------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~ 294 (612)
++.+++++ ..+...+|.+.+.+.. ....|++|||+|.+.. ...|.|+.
T Consensus 77 ~~C~~i~~g~~~d~~eidaas-----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~----------~a~naLLk 141 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS-----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG----------HSFNALLK 141 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc-----cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH----------HHHHHHHH
Confidence 23332221 1233446666665432 2346999999999842 35788998
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHH
Q 007214 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (612)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (612)
.|+... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++-.+.++..+...... .+..+..++
T Consensus 142 ~LEepp-----------~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia 207 (509)
T PRK14958 142 TLEEPP-----------SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLA 207 (509)
T ss_pred HHhccC-----------CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 888643 236777778888888888888 87 678899888888888777766554432 223366777
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
+.+.| +.+++.+++..+... +...|+.+++.+.
T Consensus 208 ~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 208 RAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred HHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 77654 788888888776433 3445777776554
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=3e-14 Score=154.44 Aligned_cols=220 Identities=15% Similarity=0.175 Sum_probs=143.9
Q ss_pred cccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEecccccc
Q 007214 169 MYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFTD 242 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~~~~ 242 (612)
..+.++|.++..+.|...+. .+.+ ..+.+++|+||||||||++++.+++++ ++++++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 44567777644344433332 2221 245679999999999999999999876 57899999876532
Q ss_pred hhh-------------------hhHHHHHHHHHHHhh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc
Q 007214 243 SEK-------------------SGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER 302 (612)
Q Consensus 243 ~~~-------------------~~~~~ir~lF~~A~~-~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 302 (612)
... .....+..+.+.... ..+.||+|||+|.+..+. ....+..|+..++....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~~- 171 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYPG- 171 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccCC-
Confidence 110 001122333333332 456899999999996211 12356666665554321
Q ss_pred CCcccccccccEEEEEecCCCC---CccccccCCCcee-EEEEeCCCCHHHHHHHHHHHhcCCC---CCccCCHHHHHHh
Q 007214 303 TGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAGKQ---LAEDVNFEELVFR 375 (612)
Q Consensus 303 ~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd-~~I~v~~Pd~~eR~~Il~~~l~~~~---l~~dvdl~~La~~ 375 (612)
.++.+|+++|.++ .+++.+.+ ||. ..|.+++++.++..+|++.++.... .-.+..++.+++.
T Consensus 172 ---------~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 240 (394)
T PRK00411 172 ---------ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADL 240 (394)
T ss_pred ---------CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHH
Confidence 2478888888754 46777665 663 5789999999999999998774321 1122235666666
Q ss_pred cCCC--cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 376 TVGF--SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 376 t~G~--sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
+.+. ..+.+-++|..|+..|..++...|+.+|+..|+++.
T Consensus 241 ~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 241 TAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 6432 344556888889889988888999999999999875
No 76
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.61 E-value=3.6e-14 Score=141.89 Aligned_cols=208 Identities=17% Similarity=0.247 Sum_probs=133.7
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~ 241 (612)
....+|++.+. +..+..+..+..++.. ..+.+++|+||||||||++|+++++++ +.++++++|..+.
T Consensus 9 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 9 PDDPTFDNFYA-GGNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCchhhcCcCc-CCcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 34578888883 3344555555555432 246789999999999999999999876 5788999988876
Q ss_pred chhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 007214 242 DSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (612)
Q Consensus 242 ~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (612)
... ..++.... .+.+|+|||+|.+... ......+..++..+.... ..+|+.++.
T Consensus 79 ~~~-------~~~~~~~~--~~~lLvIDdi~~l~~~-----~~~~~~L~~~l~~~~~~~------------~~iIits~~ 132 (226)
T TIGR03420 79 QAD-------PEVLEGLE--QADLVCLDDVEAIAGQ-----PEWQEALFHLYNRVREAG------------GRLLIAGRA 132 (226)
T ss_pred HhH-------HHHHhhcc--cCCEEEEeChhhhcCC-----hHHHHHHHHHHHHHHHcC------------CeEEEECCC
Confidence 432 22333222 2459999999988421 111223333433332110 124444443
Q ss_pred CCCCcc---ccccCCCce--eEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 322 RPDELD---LEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 322 ~p~~LD---~aLlrpgRF--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
.+..++ +.+.+ |+ ..++.+++|+.+++..+++.++....+. ++.-+..|+.. .+-+.+++.++++++...+
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 443332 56776 66 4789999999999999999876543332 22236777775 5568999999999987666
Q ss_pred HHhCCCCccHHHHHHHH
Q 007214 396 VRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 396 ~r~~~~~It~~dl~~Al 412 (612)
...+ ..|+.+.+.+.+
T Consensus 210 ~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 210 LAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHhC-CCCCHHHHHHHh
Confidence 5555 568887766553
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.61 E-value=2.7e-14 Score=150.41 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=133.1
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
++..+.+|+|++|++++++.+...+. +. ..|..+||+||||+|||++|+++|++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~---~~--------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK---KG--------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh---cC--------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 46788999999999988887776654 22 35667788999999999999999999999999999887 22
Q ss_pred hhhhhHHHHHHHHHHHh-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 007214 243 SEKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (612)
Q Consensus 243 ~~~~~~~~ir~lF~~A~-~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (612)
.......+........ ...+.+|+|||+|.+.. ... .+.|...++... .++.+|++||
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~------~~~---~~~L~~~le~~~-----------~~~~~Ilt~n 139 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL------ADA---QRHLRSFMEAYS-----------KNCSFIITAN 139 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC------HHH---HHHHHHHHHhcC-----------CCceEEEEcC
Confidence 1111111222211111 13478999999998731 111 223333344322 2357888999
Q ss_pred CCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc---------CCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHH
Q 007214 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA---------GKQLAEDVNFEELVFRTVGFSGADIRNLVNESG 392 (612)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~---------~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~ 392 (612)
.+..+++++++ || ..+.++.|+.+++.++++.++. +..+.++ .+..++....| |++.+++...
T Consensus 140 ~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~ 211 (316)
T PHA02544 140 NKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQ 211 (316)
T ss_pred ChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHH
Confidence 99999999998 99 4789999999999888764332 1222111 24566655443 5566665544
Q ss_pred HHHHHhCCCCccHHHHHHH
Q 007214 393 IMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 393 ~~A~r~~~~~It~~dl~~A 411 (612)
..+. ...++.+++...
T Consensus 212 ~~~~---~~~i~~~~l~~~ 227 (316)
T PHA02544 212 RYAS---TGKIDAGILSEV 227 (316)
T ss_pred HHHc---cCCCCHHHHHHh
Confidence 3332 245777665443
No 78
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=2.3e-14 Score=157.73 Aligned_cols=220 Identities=15% Similarity=0.243 Sum_probs=145.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEeccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~ 239 (612)
.+..||++.+..+..+.....+..+..+|. ...+++||||||||||+|++++|+++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 567899999866655555555555555552 13469999999999999999999875 46788999888
Q ss_pred ccchhhhhH--HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 240 ~~~~~~~~~--~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
|........ ..+.. |.......+.+|+|||++.+.++. .....+..+++.+.. . ...+|+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~-----~~q~elf~~~n~l~~---~---------~k~iIi 232 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT-----GVQTELFHTFNELHD---S---------GKQIVI 232 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH-----HHHHHHHHHHHHHHH---c---------CCeEEE
Confidence 765532211 12222 332222357899999999885431 111122223333222 1 113555
Q ss_pred EecCCCCC---ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCC--CCCccCCHHHHHHhcCCCcHHHHHHHHHH
Q 007214 318 CATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGK--QLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (612)
Q Consensus 318 aaTN~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~La~~t~G~sgadL~~lv~~ 390 (612)
++.+.|.. +++.+.+ ||. ..+.+.+||.+.|.+|++..+... .+.++ .+..||....| +.++|..+++.
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~ 308 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHH
Confidence 55556654 4567777 884 488899999999999999887643 33333 36777777654 78899999998
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 391 SGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
....+...+ ..||.+.+.+++...
T Consensus 309 l~~~~~~~~-~~it~~~a~~~L~~~ 332 (440)
T PRK14088 309 LLVYKETTG-EEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 776766655 469998888888764
No 79
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=3.7e-14 Score=158.96 Aligned_cols=222 Identities=15% Similarity=0.199 Sum_probs=145.1
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEeccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~ 239 (612)
.++.+|++.+..+.-......+.....++. .....++|||++|||||+|++|+|+++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 356799999877654433334444444431 123459999999999999999999876 56789999988
Q ss_pred ccchhhhhH-HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 240 FTDSEKSGA-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 240 ~~~~~~~~~-~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
|........ ......|... -..+.+|+||||+.+.++ ......+..+++.+.... -.||.
T Consensus 355 f~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk-----e~tqeeLF~l~N~l~e~g-------------k~III 415 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK-----ESTQEEFFHTFNTLHNAN-------------KQIVL 415 (617)
T ss_pred HHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC-----HHHHHHHHHHHHHHHhcC-------------CCEEE
Confidence 876532211 1112233322 234689999999998643 122223334444443211 12344
Q ss_pred ecCCC----CCccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCCccC-CHHHHHHhcCCCcHHHHHHHHHHH
Q 007214 319 ATNRP----DELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIRNLVNES 391 (612)
Q Consensus 319 aTN~p----~~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~~lv~~A 391 (612)
|+|.+ ..+++.|.+ ||. ..+.+..||.+.|.+||+.++....+.-+. -++.|+.+.. -+.++|..+++..
T Consensus 416 TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL 492 (617)
T PRK14086 416 SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRV 492 (617)
T ss_pred ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 56553 357788888 984 478999999999999999888765544222 2566776654 4788999999987
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 392 GIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
...|...+ ..|+.+.+.+++...+
T Consensus 493 ~a~a~~~~-~~itl~la~~vL~~~~ 516 (617)
T PRK14086 493 TAFASLNR-QPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 76666555 5599888888876643
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.9e-14 Score=161.61 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=143.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
+..+.+|+||+|++.+++.|...+.. . +.+..+||+||||||||++|+++|+.++..
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~---~--------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL---G--------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 56789999999999988877665542 1 356778999999999999999999988652
Q ss_pred ------------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 232 ------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
++.+++.+ ..+...+|.+.+.+.. ....|++|||+|.|. ....|.||..
T Consensus 78 ~C~~i~~g~~~D~ieidaas-----~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls----------~~a~NALLKt 142 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS-----RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLKT 142 (647)
T ss_pred HHHHHHcCCCCCceeecccc-----cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC----------HHHHHHHHHH
Confidence 12222211 1223346666555432 345799999999984 2468999999
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
|+... ..+++|.+|+.+..|.+.+++ |+ ..++|..++.++-.+.|+..+....+. .+..+..|+.
T Consensus 143 LEEPp-----------~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 143 LEEPP-----------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred HHcCC-----------CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88743 346778788889999999998 86 899999999999999998877544332 2233567777
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
.+.| +.++.-+++..|... +...|+.+++...+
T Consensus 209 ~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 209 AADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7665 777787888765422 23346666655443
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.6e-14 Score=157.73 Aligned_cols=203 Identities=18% Similarity=0.266 Sum_probs=147.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~------------- 230 (612)
++.+.+|+||+|++.+++.|+..+. . .+.|.++||+||||||||++|+.+|+.++.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~---~--------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT---L--------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 5678999999999988877765443 1 246789999999999999999999986532
Q ss_pred -----------CeeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 231 -----------~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
.++.+++++ ..+...+|.+.+.+.. ....|++|||+|.+.. ..+|.|+..
T Consensus 75 ~C~~i~~~~~~Dv~eidaas-----~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----------~A~NaLLK~ 139 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS-----NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN----------SAFNALLKT 139 (491)
T ss_pred HHHHHhccCCCCEEEEeccc-----CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH----------HHHHHHHHH
Confidence 233443321 1234457777766643 2346999999998842 367889998
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
|+... ..+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..+.++..+...... ++..+..|++
T Consensus 140 LEePp-----------~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 140 LEEPA-----------PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred HhCCC-----------CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88643 236777778888889999988 87 678999999999999988777654432 2334677787
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
.+.| +.+++.+++..+...+ ...|+.+++.+.
T Consensus 206 ~s~G-slR~alslLdqli~y~----~~~It~e~V~~l 237 (491)
T PRK14964 206 NSSG-SMRNALFLLEQAAIYS----NNKISEKSVRDL 237 (491)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7654 8888888888776543 246888887764
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.7e-14 Score=163.07 Aligned_cols=210 Identities=20% Similarity=0.276 Sum_probs=147.3
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCee--EEecc--
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--FASGA-- 238 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i--~vs~s-- 238 (612)
.++.+.+|+||+|++.+++.|...+. .. +.+.++||+||||||||++|+++|+.++.+-. ...|.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~---~~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALD---EG--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 36778999999999988887766654 22 46788999999999999999999998765310 00011
Q ss_pred ------------cccc---hhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007214 239 ------------EFTD---SEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 239 ------------~~~~---~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~ 299 (612)
++.+ ....+...++.+++.+.. ....|++|||+|.+. ...++.||..|+..
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls----------~~A~NALLKtLEEP 146 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS----------KSAFNAMLKTLEEP 146 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC----------HHHHHHHHHHHHhC
Confidence 1111 112234457777765532 234799999999873 23568888888763
Q ss_pred cccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCC
Q 007214 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (612)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (612)
. ..+.+|++||.+..+.+.+++ |+ ..+.|..++.++..+.++..+....+. .+..+..|++.+.
T Consensus 147 p-----------~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~- 211 (709)
T PRK08691 147 P-----------EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA- 211 (709)
T ss_pred C-----------CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-
Confidence 3 236778888889999988886 87 678888999999999998887755443 2223677787765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 379 ~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
-+.+++.+++..+... +...|+.+++...+
T Consensus 212 GslRdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 212 GSMRDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred CCHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 4788888888776643 34468877776654
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.3e-14 Score=165.05 Aligned_cols=194 Identities=19% Similarity=0.260 Sum_probs=135.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCe-------eEE
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-------VFA 235 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~-------i~v 235 (612)
.++.+.+|+||+|++.+++.|+..+. .. +.+..+||+||||||||++|+++|+.++..- ..+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~---~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALT---QQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH---hC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 35778999999999998877765543 22 4567789999999999999999999886531 100
Q ss_pred -ecc--------cccchh---hhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007214 236 -SGA--------EFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 236 -s~s--------~~~~~~---~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~ 299 (612)
+|- ++.... ..+...+|.+.+.+.. ....|+||||+|.|. ...+|.||..|+..
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT----------~eAqNALLKtLEEP 146 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS----------RSSFNALLKTLEEP 146 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC----------HHHHHHHHHHHhcc
Confidence 000 011010 1223345655554432 234699999999994 34788999999864
Q ss_pred cccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCC
Q 007214 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (612)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (612)
. ..+++|++|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+....+. .+..+..|+..+.|
T Consensus 147 P-----------~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 147 P-----------EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred C-----------CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3 236777778888889999998 87 789999999999999988777654332 22236677777665
Q ss_pred CcHHHHHHHHHHHH
Q 007214 379 FSGADIRNLVNESG 392 (612)
Q Consensus 379 ~sgadL~~lv~~A~ 392 (612)
+.+++-+++..+.
T Consensus 213 -d~R~ALnLLdQal 225 (944)
T PRK14949 213 -SMRDALSLTDQAI 225 (944)
T ss_pred -CHHHHHHHHHHHH
Confidence 7778888887665
No 84
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.6e-14 Score=158.04 Aligned_cols=203 Identities=18% Similarity=0.228 Sum_probs=142.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
+..+.+|+||+|++++++.|...+.. .+.|..+||+||||||||++|+++|+.+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 56789999999999998888776653 1356678999999999999999999987531
Q ss_pred -----------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 232 -----------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 232 -----------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
++.++++. ..+...++++.+.+.. ..+.|++|||+|.+. ...++.|+..+
T Consensus 76 c~~i~~~~h~dv~el~~~~-----~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls----------~~a~naLLk~L 140 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS-----NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS----------KSAFNALLKTL 140 (504)
T ss_pred hHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC----------HHHHHHHHHHH
Confidence 23333221 1223345665444432 346799999999773 23578888888
Q ss_pred cCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHh
Q 007214 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFR 375 (612)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~ 375 (612)
+... ..+++|.+||.+..+.+.+.+ |+ ..++|..|+.++..+.++..+....+. .+..+..++..
T Consensus 141 Eep~-----------~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~ 206 (504)
T PRK14963 141 EEPP-----------EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARL 206 (504)
T ss_pred HhCC-----------CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7632 236777788888999999988 87 579999999999999998877654443 22236677777
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 376 TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 376 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+.| +.+++.++++.+.. . ...|+.+++.+.+
T Consensus 207 s~G-dlR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 207 ADG-AMRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred cCC-CHHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 654 56666666665432 1 2368888876654
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=2.7e-14 Score=164.74 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=138.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
++..+.+|+|++|++++......+...+... ...++|||||||||||++|+++|+..+.+|+.+++...
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 3566899999999998764333333333322 23479999999999999999999999999988886531
Q ss_pred hhhhhHHHHHHHHHHHh-----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 SEKSGAARINEMFSIAR-----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~~~~~~~~ir~lF~~A~-----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
+...++..+..+. .....+|||||+|.+.. ...+.|+..++.. .+++|
T Consensus 89 ----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~----------~qQdaLL~~lE~g-------------~IiLI 141 (725)
T PRK13341 89 ----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK----------AQQDALLPWVENG-------------TITLI 141 (725)
T ss_pred ----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------HHHHHHHHHhcCc-------------eEEEE
Confidence 1122333343332 13457999999998842 1234566655431 26677
Q ss_pred EecC--CCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcC-------CCCC-ccCCHHHHHHhcCCCcHHHHHHH
Q 007214 318 CATN--RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG-------KQLA-EDVNFEELVFRTVGFSGADIRNL 387 (612)
Q Consensus 318 aaTN--~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~-------~~l~-~dvdl~~La~~t~G~sgadL~~l 387 (612)
++|+ ....+++++++ |+ ..+.+++++.+++..+++..+.. ..+. ++..+..|++.+.| +.+++.++
T Consensus 142 ~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~ 217 (725)
T PRK13341 142 GATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNA 217 (725)
T ss_pred EecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHH
Confidence 6653 33568899998 75 57899999999999999987751 1111 12236777777644 66777777
Q ss_pred HHHHHHHHHHhCC--CCccHHHHHHHHHH
Q 007214 388 VNESGIMSVRKGH--SKIQQQDIVDVLDK 414 (612)
Q Consensus 388 v~~A~~~A~r~~~--~~It~~dl~~Al~~ 414 (612)
++.+...+...+. ..|+.+++.+++.+
T Consensus 218 Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 218 LELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 7776543322222 23777887777765
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=5e-14 Score=159.08 Aligned_cols=203 Identities=20% Similarity=0.290 Sum_probs=145.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
+..+.+|+||+|++++.+.|+..+.. .+.+..+||+||+|||||++|+.+|+.++.+
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 56788999999999888777666542 1356789999999999999999999987532
Q ss_pred ------------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 232 ------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
++.++++ ...+...++.+.+.+.. ....|++|||+|.+. ....|.|+..
T Consensus 78 ~C~~i~~g~~~dv~eidaa-----s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt----------~~a~naLLKt 142 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAA-----SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS----------TGAFNALLKT 142 (559)
T ss_pred HHHHHhcCCCCCeEEeecc-----ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHHH
Confidence 2222221 11334557777776653 234799999999884 2367889988
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
++... ..+++|.+|+.++.+++.+++ |+ ..+.|..|+.++..+.++..+....+. ++..+..++.
T Consensus 143 LEepp-----------~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~ 208 (559)
T PRK05563 143 LEEPP-----------AHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIAR 208 (559)
T ss_pred hcCCC-----------CCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 87632 336777777888999999988 88 468899999999999998877654432 2233667777
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
.+.| +.++..+++..+...+ ...|+.+++.+.
T Consensus 209 ~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 209 AAEG-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 7665 7888888887765442 346887776654
No 87
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.58 E-value=1.7e-14 Score=170.12 Aligned_cols=165 Identities=16% Similarity=0.257 Sum_probs=123.5
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEE
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~v 235 (612)
.+-.+++|+|.++ +++.++..|... ...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~---ei~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDE---EIRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHH---HHHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 4567899999985 577777666544 23579999999999999999999987 7788999
Q ss_pred ecccccch---hhhhHHHHHHHHHHHhh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 236 SGAEFTDS---EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 236 s~s~~~~~---~~~~~~~ir~lF~~A~~-~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
+.+.+... .+..+.+++.+|+.+.. ..|+||||||+|.+.+.+.+.+. ....+-|...+. +
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~l~-------------~ 305 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPALA-------------R 305 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc--hhHHHHhcchhh-------------c
Confidence 88887532 35667889999988644 57899999999999765432221 112223332222 1
Q ss_pred ccEEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcC
Q 007214 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360 (612)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~ 360 (612)
..+.+|+||+..+ .+|+|+.| ||+ .|.++.|+.+++..|++.+...
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 2489999999876 48999999 997 6889999999999999876544
No 88
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=1.1e-13 Score=152.18 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=139.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~ 241 (612)
.++.||++.+-.+.-+.....+..+.+++.. .+.....+++||||||+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 5678999998655444333344444333210 011234679999999999999999999865 7889999987775
Q ss_pred chhhhhHH-HHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 242 DSEKSGAA-RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 242 ~~~~~~~~-~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
........ .-...|.... ..+.+|+|||++.+.++. .....+-.+++.+.. .. ..+|++++
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-----~~qeelf~l~N~l~~---~~---------k~IIlts~ 243 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-----ATQEEFFHTFNSLHT---EG---------KLIVISST 243 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-----hhHHHHHHHHHHHHH---CC---------CcEEEecC
Confidence 44211110 0112233322 346799999999985431 112222233332211 00 12444444
Q ss_pred CCCC---CccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCCccC-CHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007214 321 NRPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 321 N~p~---~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~~lv~~A~~~ 394 (612)
+.|. .+++.|.+ ||. ..+.+.+|+.++|.+|++..+....+.-+. -++.|+.... -+.++|.+.++..+..
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~~~ 320 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALS-SNVKSLLHALTLLAKR 320 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 4443 56788888 995 789999999999999999887655432222 2455666544 3677888888877532
Q ss_pred -HHHh-CCCCccHHHHHHHHHHHH
Q 007214 395 -SVRK-GHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 395 -A~r~-~~~~It~~dl~~Al~~~~ 416 (612)
|... ....|+.+++.+++...+
T Consensus 321 ~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 321 VAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHhh
Confidence 2221 224699999998887653
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.58 E-value=5.1e-14 Score=166.08 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=119.3
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEEe
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~vs 236 (612)
.-.++.|+|.++ +++.++..|... .+.+++|+||||||||++|+++|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~---ei~~~~~~L~r~---------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREK---EIERVIQILGRR---------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHH---HHHHHHHHHccc---------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 345888998884 455555555433 45689999999999999999999876 46789999
Q ss_pred cccccch---hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 007214 237 GAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (612)
Q Consensus 237 ~s~~~~~---~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (612)
++.+... .+..+.+++.+|+.++...++||||||+|.+.+.+...+. ....+-|...+.. ..
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l~r-------------g~ 307 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA--IDAANILKPALAR-------------GE 307 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHHhC-------------CC
Confidence 8877632 3566789999999998888999999999999865432221 1122233333322 23
Q ss_pred EEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHH
Q 007214 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357 (612)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~ 357 (612)
+.+|++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..
T Consensus 308 l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 308 LQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred cEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 78999998764 47899999 995 5899999999999998753
No 90
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.58 E-value=1.1e-13 Score=140.32 Aligned_cols=209 Identities=13% Similarity=0.139 Sum_probs=129.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~ 241 (612)
.++.+|++.+-. .-...+..+..+...+ .+..++||||||||||+|++++|+++ |..+.+++..+..
T Consensus 16 ~~~~~fd~f~~~-~n~~a~~~l~~~~~~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 16 PDDETFASFYPG-DNDSLLAALQNALRQE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred CCcCCccccccC-ccHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 456789998844 3334444444443333 23479999999999999999999865 4456666655432
Q ss_pred chhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 007214 242 DSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (612)
Q Consensus 242 ~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (612)
.. ..++.+.... ..+|+|||+|.+.++ ......+..+++.+.... ..-+++++++
T Consensus 86 ~~-------~~~~~~~~~~--~dlliiDdi~~~~~~-----~~~~~~lf~l~n~~~e~g-----------~~~li~ts~~ 140 (235)
T PRK08084 86 WF-------VPEVLEGMEQ--LSLVCIDNIECIAGD-----ELWEMAIFDLYNRILESG-----------RTRLLITGDR 140 (235)
T ss_pred hh-------hHHHHHHhhh--CCEEEEeChhhhcCC-----HHHHHHHHHHHHHHHHcC-----------CCeEEEeCCC
Confidence 21 1122222222 258999999988532 233334444444432210 0124555555
Q ss_pred CCCC---ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 322 RPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 322 ~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
.|.. +.|.|++ |+. ..+.+.+|+.+++.++++..+....+. ++.-++.|+++..| +.+.+.++++.....+
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 6555 5788988 985 689999999999999998766543332 12236677777654 7888888888754333
Q ss_pred HHhCCCCccHHHHHHHH
Q 007214 396 VRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 396 ~r~~~~~It~~dl~~Al 412 (612)
... ...||.+.+.+++
T Consensus 218 l~~-~~~it~~~~k~~l 233 (235)
T PRK08084 218 ITA-QRKLTIPFVKEIL 233 (235)
T ss_pred Hhc-CCCCCHHHHHHHH
Confidence 333 3558887776654
No 91
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.1e-14 Score=156.63 Aligned_cols=172 Identities=24% Similarity=0.289 Sum_probs=127.9
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-h------
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E------ 244 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~------ 244 (612)
|--|.+++|+.+-+.....+... . -...-++|+||||+|||+|++++|+.+|.+|+.++..-+.+. .
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~---~---~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK---K---LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc---c---CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 45677888887766655432221 1 112358899999999999999999999999999998776543 1
Q ss_pred ---hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc----ccccEEEE
Q 007214 245 ---KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS----LRQAVIFI 317 (612)
Q Consensus 245 ---~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~----~~~~ViVI 317 (612)
|.-..++-+-..+|....| +++|||||.++.. ..+++ -.+||+.||.-.+..-.+++- .-++|++|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDP-----aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDP-----ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCCh-----HHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 1223356677778887777 6788999999643 23333 368999998766554333221 12579999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
+|+|..+.++.+|+. |+ ..|++.-++.++..+|.+.|+-
T Consensus 471 aTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 471 ATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 99 6899999999999999998873
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.6e-14 Score=159.69 Aligned_cols=210 Identities=17% Similarity=0.271 Sum_probs=144.0
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCe------e-EE
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF------V-FA 235 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~------i-~v 235 (612)
.++.+.+|+||+|++.+.+.|...+.. . +.+..+||+||+|||||++|+++|+.+++.- . .-
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~---~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQ---Q--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 356789999999999887777665542 2 4567889999999999999999999876410 0 00
Q ss_pred e------c--------ccccch---hhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 007214 236 S------G--------AEFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (612)
Q Consensus 236 s------~--------s~~~~~---~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~ 294 (612)
. | .++.+. ...+...+|++.+.+... ...|++|||+|.+.. ...|.|+.
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----------~a~NaLLK 146 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----------TAFNAMLK 146 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH----------HHHHHHHH
Confidence 0 0 111111 112334577777665432 236999999999842 35788888
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCc-cCCHHHHH
Q 007214 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELV 373 (612)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La 373 (612)
.|+... ..+++|.+|+.+..+.+.+++ |+ ..++|..++.++..+.++..+....+.- +..+..|+
T Consensus 147 tLEEPP-----------~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 147 TLEEPP-----------EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred hcccCC-----------CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 887633 236777777888888888888 87 7899999999999999987776544332 22367778
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+.+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 213 ~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 213 RAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 77665 778888887665533 34467777766543
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=3.9e-14 Score=153.26 Aligned_cols=189 Identities=15% Similarity=0.240 Sum_probs=129.5
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCe---------------e
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF---------------V 233 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~---------------i 233 (612)
.|++|+|++.+++.|+..+..-+++ +...+.+.|.++||+||||+|||++|+++|+.+..+- .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 5999999999999988888754332 3334556789999999999999999999998764431 0
Q ss_pred EEecccc--cch--hhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCc
Q 007214 234 FASGAEF--TDS--EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGI 305 (612)
Q Consensus 234 ~vs~s~~--~~~--~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~ 305 (612)
.-+-+++ ... ...+...+|.+++.+... ...|+||||+|.+.. ...|.||..|+....
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------~aanaLLk~LEep~~---- 146 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------RAANALLKAVEEPPP---- 146 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------HHHHHHHHHhhcCCC----
Confidence 0001111 000 112334588888877542 346999999999942 245889988876332
Q ss_pred ccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHH
Q 007214 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIR 385 (612)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~ 385 (612)
++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+++.... ... ......++..+.|..+..+.
T Consensus 147 -------~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 147 -------RTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred -------CCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 24455555558999999998 88 699999999999888876322 222 23356778888887776554
Q ss_pred HH
Q 007214 386 NL 387 (612)
Q Consensus 386 ~l 387 (612)
-+
T Consensus 213 l~ 214 (394)
T PRK07940 213 LA 214 (394)
T ss_pred Hh
Confidence 43
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.2e-14 Score=158.70 Aligned_cols=209 Identities=17% Similarity=0.238 Sum_probs=143.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCee--EEecc---
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--FASGA--- 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i--~vs~s--- 238 (612)
+..+.+|+||+|++.+++.|...+. .. +.+..+||+||||+|||++|+++|+.++...- .-.|.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~---~~--------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALE---QQ--------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH---cC--------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5667899999999988887766554 22 35678899999999999999999998865210 00111
Q ss_pred -----------cccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 007214 239 -----------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (612)
Q Consensus 239 -----------~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~ 300 (612)
++... ...+...++.+.+.+.. ....|++|||+|.+. ....|.|+..++...
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls----------~~a~naLLK~LEepp 147 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS----------KSAFNAMLKTLEEPP 147 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC----------HHHHHHHHHHHhCCC
Confidence 11111 11234457777776643 234699999999884 235788999887743
Q ss_pred ccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCc-cCCHHHHHHhcCCC
Q 007214 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGF 379 (612)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~ 379 (612)
..+++|++|+.++.+.+.+++ |+ ..++|..|+.++-.+.+...+....+.. +..+..++..+. -
T Consensus 148 -----------~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-G 212 (527)
T PRK14969 148 -----------EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-G 212 (527)
T ss_pred -----------CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 236777777888888888887 77 7899999999999888887765443322 223566776654 4
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 380 sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+.+++.+++..+... +...|+.+++.+.+
T Consensus 213 slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 213 SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 778888888776543 34567777665543
No 95
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.56 E-value=7.1e-14 Score=144.51 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=137.3
Q ss_pred ccCCcccccceecCcccH---HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC---eeEEe
Q 007214 163 VSDTKSMYKEVVLGGDVW---DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFAS 236 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k---~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---~i~vs 236 (612)
+...+.+++|.+|++++. ..|+.+++.-+-| +++||||||||||+|||.++....-+ |+.++
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ip------------SmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIP------------SMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHcCCCC------------ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 456788999999998754 3455555543333 69999999999999999999887666 56555
Q ss_pred cccccchhhhhHHHHHHHHHHHhh-----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 237 GAEFTDSEKSGAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 237 ~s~~~~~~~~~~~~ir~lF~~A~~-----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
... .+...+|++|+++++ .+..|||||||+.+... ....+|-..+.
T Consensus 198 At~------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks----------QQD~fLP~VE~------------- 248 (554)
T KOG2028|consen 198 ATN------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS----------QQDTFLPHVEN------------- 248 (554)
T ss_pred ccc------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh----------hhhcccceecc-------------
Confidence 433 223458999998875 34689999999988421 11233333322
Q ss_pred ccEEEEEec--CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc---C--C---CCCc---cC---CHHHHHHh
Q 007214 312 QAVIFICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA---G--K---QLAE---DV---NFEELVFR 375 (612)
Q Consensus 312 ~~ViVIaaT--N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~---~--~---~l~~---dv---dl~~La~~ 375 (612)
..|++|+|| |..-.|..||++ |+ +++.+.....+....||..-.. . . ++.. .+ -++.++..
T Consensus 249 G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 237888876 555678999998 87 6788888888888888876332 1 1 1111 11 25677777
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHH
Q 007214 376 TVGFSGADIRNLVNESGIMSVRKG---HSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 376 t~G~sgadL~~lv~~A~~~A~r~~---~~~It~~dl~~Al~~~ 415 (612)
+.|=..+-|..|=-.+.+.+.|.+ +..++.+|+.+++.+.
T Consensus 326 sdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 326 SDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 777555444333222223344444 3468899998888653
No 96
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.56 E-value=9.7e-14 Score=142.81 Aligned_cols=210 Identities=19% Similarity=0.285 Sum_probs=129.1
Q ss_pred ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh-hhh------HHH
Q 007214 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSG------AAR 250 (612)
Q Consensus 178 e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~-~~~------~~~ 250 (612)
.+++.++.+..++.. ...+||+||||||||++|+++|..+|.|++.++|..-.... ..+ ...
T Consensus 6 ~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 6 AVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhh
Confidence 345556666665543 25799999999999999999999999999999887633211 000 000
Q ss_pred H-HH-------------------HHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc-CC----c
Q 007214 251 I-NE-------------------MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER-TG----I 305 (612)
Q Consensus 251 i-r~-------------------lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~-~~----~ 305 (612)
+ .. .+..|.. .+.+|+|||+|.+. ..+.+.|+..|+...-. .+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~-~g~~lllDEi~r~~----------~~~q~~Ll~~Le~~~~~i~~~~~~~ 143 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNRLTLAVR-EGFTLVYDEFTRSK----------PETNNVLLSVFEEGVLELPGKRGTS 143 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCchHHHHHH-cCCEEEEcchhhCC----------HHHHHHHHHHhcCCeEEccCCCCCC
Confidence 0 00 1112222 24699999999863 23566677766542211 00 0
Q ss_pred ccccccccEEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccC--CHHHHHHhc--
Q 007214 306 DRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV--NFEELVFRT-- 376 (612)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~La~~t-- 376 (612)
..+....++.||+|+|... .++++|++ || ..+.++.|+.++-.+|++.+.. ..... .+-.++..+
T Consensus 144 ~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~ 217 (262)
T TIGR02640 144 RYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRA 217 (262)
T ss_pred ceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHh
Confidence 1122345688999999763 56889998 98 6899999999999999998752 21111 011111111
Q ss_pred -C-CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 377 -V-GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 377 -~-G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
. -..+. ++.++.-|...+....+..++.+|+.+.+..++
T Consensus 218 ~~~~~~~~-~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 218 SGDEITSG-LRASLMIAEVATQQDIPVDVDDEDFVDLCIDIL 258 (262)
T ss_pred hCCccCCc-HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHh
Confidence 1 11111 445555454555555667788888888877765
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.56 E-value=9.8e-14 Score=148.20 Aligned_cols=205 Identities=22% Similarity=0.324 Sum_probs=142.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
+..+.+|+|++|++++++.|...+. +. +.|..+||+||||+|||++|+++|+.+..+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~---~~--------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIK---NG--------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5567899999999988877766553 22 356789999999999999999999887432
Q ss_pred ------------eeEEecccccchhhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 232 ------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
++.+++.. ..+...++.+++.+... ...|++|||+|.+.. ...+.|+..
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~----------~~~~~Ll~~ 140 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS-----NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK----------SAFNALLKT 140 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH----------HHHHHHHHH
Confidence 22222211 12233467777766432 236999999998832 356788888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
++... ..+++|++||.++.+.+++++ |+ ..+++++|+.++..++++.+++..... ++..+..++.
T Consensus 141 le~~~-----------~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~ 206 (355)
T TIGR02397 141 LEEPP-----------EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIAR 206 (355)
T ss_pred HhCCc-----------cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 86532 236777778888888889988 87 578999999999999999877655432 1223556676
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
.+.| +++.+.+.++.+...+ ...|+.+++.+++.
T Consensus 207 ~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 207 AADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 6554 6677777776655442 24599998877654
No 98
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.1e-13 Score=161.38 Aligned_cols=209 Identities=20% Similarity=0.183 Sum_probs=140.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-------eeEE-
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVFA- 235 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------~i~v- 235 (612)
++.+.+|+||+|++.+++.|+..+. + .+.+..+||+||+|||||++|+.+|+.+++. +-.+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~---~--------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD---S--------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---h--------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 5678899999999988887766554 2 1456779999999999999999999988642 1000
Q ss_pred ec----------ccccch---hhhhHHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 236 SG----------AEFTDS---EKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 236 s~----------s~~~~~---~~~~~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
+| .++... ...+...+|++-+.+. .....|+||||+|.|. ....|.||+.|+.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt----------~~a~NaLLK~LEE 146 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT----------PQGFNALLKIVEE 146 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------HHHHHHHHHHHhC
Confidence 00 111111 1112334555433332 2345799999999994 2467889998887
Q ss_pred CcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCc-cCCHHHHHHhcC
Q 007214 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTV 377 (612)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~ 377 (612)
... .+++|++|+.++.|.+.|++ |+ .++.|..++.++..++|+..+....+.- +..+..|++.+.
T Consensus 147 pP~-----------~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 147 PPE-----------HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred CCC-----------CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 443 36777778888888888988 87 6899999999999999988776554432 223556666655
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 378 G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
| +.+++.++++..... .+...|+.+++.+.
T Consensus 213 G-dlR~Al~eLEKLia~---~~~~~IT~e~V~al 242 (824)
T PRK07764 213 G-SVRDSLSVLDQLLAG---AGPEGVTYERAVAL 242 (824)
T ss_pred C-CHHHHHHHHHHHHhh---cCCCCCCHHHHHHH
Confidence 4 777777777764422 23455777766543
No 99
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.3e-14 Score=158.50 Aligned_cols=172 Identities=23% Similarity=0.329 Sum_probs=127.2
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-h------
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E------ 244 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~------ 244 (612)
|--|.+++|+.+-|++..-+-. |.-..+-++|+||||+|||+++|+||+.+|+.|+.++...+.+. .
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccce
Confidence 5567788888888877642211 22345568899999999999999999999999999997766543 1
Q ss_pred ---hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc-c---ccccEEEE
Q 007214 245 ---KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF-S---LRQAVIFI 317 (612)
Q Consensus 245 ---~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~-~---~~~~ViVI 317 (612)
+.-..++-+.++....+.| +++|||+|.+++ ...+++ -.+||+.||.-.+.+-.+++ + .-+.|++|
T Consensus 486 TYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-g~qGDP-----asALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-GHQGDP-----ASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred eeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-CCCCCh-----HHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 1122345666667766776 678899999973 223333 36788888875554432221 1 12569999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
||.|..+.|+++|+. |+ ..|+++-+..++..+|.+.|+-
T Consensus 559 cTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 999999999999999 99 6899999999999999998874
No 100
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.55 E-value=7.6e-14 Score=165.09 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=140.8
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEE
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~v 235 (612)
.+-.++.++|.++ +++.++..|... ...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~---ei~~~~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDE---EIRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHH---HHHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 4567889999985 466666665443 34578999999999999999999875 6778888
Q ss_pred ecccccch---hhhhHHHHHHHHHHHhh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 236 SGAEFTDS---EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 236 s~s~~~~~---~~~~~~~ir~lF~~A~~-~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
+.+.+... .+....+++.+|+.+.. ..|+||||||+|.+.+.+...+ .....+.|...+. +
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~~~Lk~~l~-------------~ 300 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--AMDAGNMLKPALA-------------R 300 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--hhHHHHHhchhhh-------------c
Confidence 87776522 35567789999998865 4689999999999975432211 1122233322221 1
Q ss_pred ccEEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccC-----CHHHHHHhcCCC--
Q 007214 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-----NFEELVFRTVGF-- 379 (612)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-----dl~~La~~t~G~-- 379 (612)
..+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++.+|++.+.........+ .+...+..+.+|
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 2489999998764 47999999 996 58999999999999999776554433232 345555555554
Q ss_pred ---cHHHHHHHHHHHHHHHHH
Q 007214 380 ---SGADIRNLVNESGIMSVR 397 (612)
Q Consensus 380 ---sgadL~~lv~~A~~~A~r 397 (612)
-|.---.|+.+|+..+..
T Consensus 378 ~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 378 DRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred ccCCchHHHHHHHHHHHHHHh
Confidence 344555778887765543
No 101
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.55 E-value=1.5e-13 Score=149.53 Aligned_cols=189 Identities=24% Similarity=0.309 Sum_probs=118.7
Q ss_pred CCcccccc-eecCcccHHHHHHHHH-H---hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccc
Q 007214 165 DTKSMYKE-VVLGGDVWDLLDELMI-Y---MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (612)
Q Consensus 165 ~~~~~f~d-vvG~~e~k~~L~elv~-~---l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~ 239 (612)
.....+++ |+|++++|+.|...+. . +.....-..-......++||+||||||||++|+++|..++.||+.++++.
T Consensus 64 ~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 64 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred HHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 33445554 8999999998866552 1 11110000000123468999999999999999999999999999999998
Q ss_pred ccchh--hhh-HHHHHHHHHHH----hhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccC--Ccc
Q 007214 240 FTDSE--KSG-AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERT--GID 306 (612)
Q Consensus 240 ~~~~~--~~~-~~~ir~lF~~A----~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~--~~~ 306 (612)
+.... +.. ...+..++..+ ....++||||||||.+..++.+ .+-....+++.||..|++..... ...
T Consensus 144 l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg 223 (412)
T PRK05342 144 LTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 223 (412)
T ss_pred cccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCC
Confidence 87542 222 22344444322 2346799999999999765221 11222457788999998643111 111
Q ss_pred cccccccEEEEEecCCCC----------------------------------------------------CccccccCCC
Q 007214 307 RFSLRQAVIFICATNRPD----------------------------------------------------ELDLEFVRPG 334 (612)
Q Consensus 307 ~~~~~~~ViVIaaTN~p~----------------------------------------------------~LD~aLlrpg 334 (612)
+.....+.++|.|+|-.. .+.|+|+ |
T Consensus 224 ~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--g 301 (412)
T PRK05342 224 RKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--G 301 (412)
T ss_pred cCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--C
Confidence 122223455555555411 0233333 5
Q ss_pred ceeEEEEeCCCCHHHHHHHHH
Q 007214 335 RIDRRLYIGLPDAKQRVQIFD 355 (612)
Q Consensus 335 RFd~~I~v~~Pd~~eR~~Il~ 355 (612)
|+|..+.+.+.+.+...+|+.
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILT 322 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHH
Confidence 999999999999999999986
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.54 E-value=3.1e-13 Score=135.71 Aligned_cols=205 Identities=14% Similarity=0.186 Sum_probs=129.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
..++.+|+++++.... ..+..+..+.. +...+.+++|+||||||||+||+++++++ +.+++++++.++
T Consensus 11 ~~~~~~~d~f~~~~~~-~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 11 PPPPPTFDNFVAGENA-ELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCChhhhcccccCCcH-HHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 4557889998844321 23333333322 12345789999999999999999999865 778888888775
Q ss_pred cchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 241 ~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
... +.. ...+.+|+|||+|.+.. .....+..++..+.. . ...++|.++
T Consensus 82 ~~~-----------~~~--~~~~~~liiDdi~~l~~-------~~~~~L~~~~~~~~~---~---------~~~~vl~~~ 129 (227)
T PRK08903 82 LLA-----------FDF--DPEAELYAVDDVERLDD-------AQQIALFNLFNRVRA---H---------GQGALLVAG 129 (227)
T ss_pred HHH-----------Hhh--cccCCEEEEeChhhcCc-------hHHHHHHHHHHHHHH---c---------CCcEEEEeC
Confidence 422 111 12356899999998732 122333444443322 1 112344444
Q ss_pred CC-CC--CccccccCCCce--eEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007214 321 NR-PD--ELDLEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 321 N~-p~--~LD~aLlrpgRF--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~ 394 (612)
+. |. .+.+.|.+ || ...+.+++|+.+++..+++.+.....+. ++.-+..|++..+ -+.+++.++++.....
T Consensus 130 ~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~ 206 (227)
T PRK08903 130 PAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRY 206 (227)
T ss_pred CCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHH
Confidence 43 21 34566666 77 4799999999999999998766543332 1223677777544 4889999999986655
Q ss_pred HHHhCCCCccHHHHHHHHH
Q 007214 395 SVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 395 A~r~~~~~It~~dl~~Al~ 413 (612)
|...+ ..||...+.+++.
T Consensus 207 ~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 207 SLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHhC-CCCCHHHHHHHHh
Confidence 54444 6799888777653
No 103
>PRK08727 hypothetical protein; Validated
Probab=99.54 E-value=5.3e-13 Score=135.06 Aligned_cols=209 Identities=18% Similarity=0.261 Sum_probs=130.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
-.+..+|++.++.++. .+..+...... .....++|+||+|||||+|++|++.++ |...++++..++
T Consensus 12 ~~~~~~f~~f~~~~~n--~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 12 YPSDQRFDSYIAAPDG--LLAQLQALAAG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCCcCChhhccCCcHH--HHHHHHHHHhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 3556799999876642 22222222111 123459999999999999999997654 667777775553
Q ss_pred cchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 241 ~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
.. .+...++... ...+|+|||+|.+.++ ......+..+++.+... +..||+|+
T Consensus 81 ~~-------~~~~~~~~l~--~~dlLiIDDi~~l~~~-----~~~~~~lf~l~n~~~~~-------------~~~vI~ts 133 (233)
T PRK08727 81 AG-------RLRDALEALE--GRSLVALDGLESIAGQ-----REDEVALFDFHNRARAA-------------GITLLYTA 133 (233)
T ss_pred hh-------hHHHHHHHHh--cCCEEEEeCcccccCC-----hHHHHHHHHHHHHHHHc-------------CCeEEEEC
Confidence 32 2334444433 3469999999988532 12223344455444221 12355555
Q ss_pred C-CCCCc---cccccCCCce--eEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHH
Q 007214 321 N-RPDEL---DLEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGI 393 (612)
Q Consensus 321 N-~p~~L---D~aLlrpgRF--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~ 393 (612)
| .|..+ ++.|.+ || ...+.+++|+.+++.+|++.++....+. ++..+..|+.++.| +.+.+.++++....
T Consensus 134 ~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~ 210 (233)
T PRK08727 134 RQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDR 210 (233)
T ss_pred CCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4 55544 788988 87 5688999999999999999866543332 22236777877653 55556666776554
Q ss_pred HHHHhCCCCccHHHHHHHHHH
Q 007214 394 MSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 394 ~A~r~~~~~It~~dl~~Al~~ 414 (612)
.+...+ ..||.+.+.+.+..
T Consensus 211 ~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 211 ESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHhC-CCCCHHHHHHHHhh
Confidence 444444 46888887776643
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.6e-13 Score=154.82 Aligned_cols=209 Identities=20% Similarity=0.223 Sum_probs=141.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-------eeEE-
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVFA- 235 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------~i~v- 235 (612)
++.+.+|+||+|++.+++.|...+. .. +.+..+||+||+|||||++|+++|+.++.. .-.+
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~---~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD---AG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 5678899999999988877766554 22 466778999999999999999999987642 1000
Q ss_pred ec----------ccccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 236 SG----------AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 236 s~----------s~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
+| .++.+. ...+...++++-+.+.. ....|++|||+|.+.. ...|.||..|+.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~----------~A~NALLK~LEE 144 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT----------AGFNALLKIVEE 144 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH----------HHHHHHHHHHhc
Confidence 00 011111 11133445555444432 2346999999998842 367889998886
Q ss_pred CcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcC
Q 007214 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTV 377 (612)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~ 377 (612)
.. ..+++|++|+.++.+.+.+++ |+ .+++|..++.++..+.++..+...... ++..+..+++. .
T Consensus 145 pp-----------~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~-s 209 (584)
T PRK14952 145 PP-----------EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA-G 209 (584)
T ss_pred CC-----------CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-c
Confidence 43 247788888888999999988 85 689999999999888888777654432 22234555555 4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 378 G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
|-+.+++.++++.+...+ +...|+.+++.+.
T Consensus 210 ~GdlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 210 GGSPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred CCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 557888888888765332 2456777776654
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.5e-13 Score=154.71 Aligned_cols=204 Identities=21% Similarity=0.244 Sum_probs=139.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
++.+.+|+||+|++.+++.|...+.. . +.+..+||+||||||||++|+.+|+.+...
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~---~--------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE---N--------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc---C--------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 56789999999999988888776642 1 345689999999999999999999988652
Q ss_pred ------------eeEEecccccchhhhhHHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 232 ------------FVFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 232 ------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
++.+++.. ..+...++.+.+.+. .....||||||+|.+. ...++.|+..
T Consensus 78 sC~~i~~g~hpDv~eId~a~-----~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt----------~~a~naLLk~ 142 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS-----NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT----------REAFNALLKT 142 (624)
T ss_pred HHHHHhcCCCCceEEEeccc-----ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC----------HHHHHHHHHH
Confidence 22332211 112223444333222 2335799999999984 2356888888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
|+... ..+++|++||.+..+.+.+++ |+ ..++|..++.++..++|+..+...... ++..+..|+.
T Consensus 143 LEEP~-----------~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 143 LEEPP-----------ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred hhccC-----------CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 87632 236788888888888888887 87 578999999999999998766544432 2223666776
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
.+.| +.+++.+++..+. ..+...|+.+++.+++
T Consensus 209 ~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 6654 5555666665442 2344578888876654
No 106
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.54 E-value=1.8e-13 Score=159.69 Aligned_cols=171 Identities=20% Similarity=0.265 Sum_probs=118.6
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-h------
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E------ 244 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~------ 244 (612)
+..|.+.+|+.+.+.+...+.. +......++|+||||||||++++++|+.++.+++.++++...+. .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 4778888888877666543321 11123469999999999999999999999999999987765432 1
Q ss_pred ---hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc----ccccEEEE
Q 007214 245 ---KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS----LRQAVIFI 317 (612)
Q Consensus 245 ---~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~----~~~~ViVI 317 (612)
+....++...+..+....| ||||||+|.+.... .+ .....|+..+|...+..-.+.+- .-++|++|
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-~g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-RG-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-CC-----CHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1112234445555544444 78999999996432 11 13567888887532221111111 12679999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
+|+|.. .|+++|++ ||. .|.+..++.++..+|.+.|+.
T Consensus 470 ~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 470 ATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 999987 59999999 994 799999999999999998874
No 107
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.1e-13 Score=152.52 Aligned_cols=202 Identities=19% Similarity=0.272 Sum_probs=136.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
+..+.+|+||+|++.+++.|...+. .. +.+..+||+||||||||++|+++|+.++..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~---~~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALE---TQ--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 5678899999999988877665553 22 356779999999999999999999987541
Q ss_pred ------------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 232 ------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
++.+++. ...+...++.+.+.+.. ....|++|||+|.+. ....+.|+..
T Consensus 78 sC~~i~~~~~~dlieidaa-----s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls----------~~a~naLLK~ 142 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAA-----SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS----------KQSFNALLKT 142 (546)
T ss_pred HHHHHhcCCCCceEEeecc-----cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc----------HHHHHHHHHH
Confidence 1222211 11222345555554432 235799999999884 2367888888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
|+.... .+++|++|+.+..+.+.+++ |+ ..+++..++.++..+.++..+...... .+..+..++.
T Consensus 143 LEepp~-----------~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 143 LEEPPE-----------YVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HhcCCC-----------CceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 886432 35667677778888888887 88 789999999999888888766544332 2223566676
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~ 410 (612)
.+ +-+.+++-+++..+...+ + ..|+.+++.+
T Consensus 209 ~s-~GdlR~alnlLek~i~~~---~-~~It~~~V~~ 239 (546)
T PRK14957 209 HA-KGSLRDALSLLDQAISFC---G-GELKQAQIKQ 239 (546)
T ss_pred Hc-CCCHHHHHHHHHHHHHhc---c-CCCCHHHHHH
Confidence 65 447777777777665332 1 3466655554
No 108
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=8e-14 Score=141.93 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=128.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------eeEEe
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------FVFAS 236 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------~i~vs 236 (612)
+++.+.+|+|++|++.+.+.|...+.- + .-..+|+|||||||||+.|+++|+++..| +...+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 578899999999999988887766543 2 22369999999999999999999998652 23334
Q ss_pred cccccchhhhhHHHHHHHHHHHhh---------cCC-eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc
Q 007214 237 GAEFTDSEKSGAARINEMFSIARR---------NAP-AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID 306 (612)
Q Consensus 237 ~s~~~~~~~~~~~~ir~lF~~A~~---------~~P-~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~ 306 (612)
.++...... ...++ .-|++... +.| .|++|||.|.+.. ...+.|...|+.+...
T Consensus 96 aSderGisv-vr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts----------daq~aLrr~mE~~s~~---- 159 (346)
T KOG0989|consen 96 ASDERGISV-VREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS----------DAQAALRRTMEDFSRT---- 159 (346)
T ss_pred ccccccccc-hhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH----------HHHHHHHHHHhccccc----
Confidence 444333211 11111 11222211 112 6999999999953 3678899999886543
Q ss_pred cccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC-HHHHHHhcCCCcHHHHH
Q 007214 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIR 385 (612)
Q Consensus 307 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~ 385 (612)
+.+|..||.++.|.+.+.+ |+ .++.|+..+.+.-.+.|+..+....+.-+.+ +..++..+.| +-++-.
T Consensus 160 -------trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 160 -------TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred -------eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 5778889999999999988 87 4677877777777777777776655543333 5667776555 444444
Q ss_pred HHHHHHH
Q 007214 386 NLVNESG 392 (612)
Q Consensus 386 ~lv~~A~ 392 (612)
..++.++
T Consensus 229 t~Lqsls 235 (346)
T KOG0989|consen 229 TTLQSLS 235 (346)
T ss_pred HHHHHhh
Confidence 4444443
No 109
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.52 E-value=8.1e-14 Score=147.49 Aligned_cols=228 Identities=18% Similarity=0.268 Sum_probs=141.0
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-------CCCeeEE--e
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFA--S 236 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-------g~~~i~v--s 236 (612)
.+..|++|+|++++++.+.-.. .++ ...++||+||||||||++||++|+-+ +.|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~---~~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTA---IDP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---hcc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 3567999999998887665321 111 12479999999999999999999877 3322111 1
Q ss_pred c-ccc---------------cch-h------hhhHHHHHHH-------HHHH--hhcCCeEEEEccchhhhccCCCCChh
Q 007214 237 G-AEF---------------TDS-E------KSGAARINEM-------FSIA--RRNAPAFVFVDEIDAIAGRHARKDPR 284 (612)
Q Consensus 237 ~-s~~---------------~~~-~------~~~~~~ir~l-------F~~A--~~~~P~ILfIDEiD~l~~~~~~~~~~ 284 (612)
+ .++ ... . ..|...+... |..- ......+||+||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 0 000 000 0 0010001111 1100 00112589999999884
Q ss_pred HHHHHHHHHHHhcCCc---ccCCcccccccccEEEEEecCCCC-CccccccCCCceeEEEEeCCCCH-HHHHHHHHHHhc
Q 007214 285 RRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSA 359 (612)
Q Consensus 285 ~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~Pd~-~eR~~Il~~~l~ 359 (612)
..+++.|++.|+... ...+ ..+..+..+++++|+|..+ .++++++. ||...+.+++|.. ++|.+|++....
T Consensus 142 -~~~q~~Lle~mee~~v~v~r~G-~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 142 -DHIVDLLLDVAQSGENVVEREG-LSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred -HHHHHHHHHHHHcCCeEEEECC-eEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 236677888776533 1111 1234456799999999755 68999999 9999999998876 999999986432
Q ss_pred CCC----C------Ccc---------------C--C------HHHHHHhcC-CCcHHHHHHHHHHHHHHHHHhCCCCccH
Q 007214 360 GKQ----L------AED---------------V--N------FEELVFRTV-GFSGADIRNLVNESGIMSVRKGHSKIQQ 405 (612)
Q Consensus 360 ~~~----l------~~d---------------v--d------l~~La~~t~-G~sgadL~~lv~~A~~~A~r~~~~~It~ 405 (612)
... . ... + + +.+++..+. .-.-+++. +++.|...|+.+|+..|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~ 296 (334)
T PRK13407 218 YDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGR 296 (334)
T ss_pred ccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCH
Confidence 110 0 000 0 0 222333322 12345565 9999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 007214 406 QDIVDVLDKQLLEG 419 (612)
Q Consensus 406 ~dl~~Al~~~~~~~ 419 (612)
+|+..+..-++.++
T Consensus 297 ~Di~~~~~~vl~hR 310 (334)
T PRK13407 297 SHLRSVATMALSHR 310 (334)
T ss_pred HHHHHHHHHhhhhh
Confidence 99988887666544
No 110
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.52 E-value=4.1e-13 Score=152.73 Aligned_cols=187 Identities=17% Similarity=0.228 Sum_probs=122.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc-------C---CCeeEEecccccchhh------------------hhHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES-------G---LPFVFASGAEFTDSEK------------------SGAARINEMFS 256 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~-------g---~~~i~vs~s~~~~~~~------------------~~~~~ir~lF~ 256 (612)
..++|+|+||||||++++.+.+++ + +.+++++|..+..... .....+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 345799999999999999997765 2 5578999976543311 11234556666
Q ss_pred HHh--hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC---CCCcccccc
Q 007214 257 IAR--RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR---PDELDLEFV 331 (612)
Q Consensus 257 ~A~--~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~---p~~LD~aLl 331 (612)
... ....+||+|||||.|..+ ....+..|+..... . ...++||+++|. ++.|++.+.
T Consensus 862 ~L~k~~r~v~IIILDEID~L~kK-------~QDVLYnLFR~~~~-s----------~SKLiLIGISNdlDLperLdPRLR 923 (1164)
T PTZ00112 862 QNKKDNRNVSILIIDEIDYLITK-------TQKVLFTLFDWPTK-I----------NSKLVLIAISNTMDLPERLIPRCR 923 (1164)
T ss_pred hhhcccccceEEEeehHhhhCcc-------HHHHHHHHHHHhhc-c----------CCeEEEEEecCchhcchhhhhhhh
Confidence 542 234579999999999642 12345555554321 1 134889999986 567788888
Q ss_pred CCCceeE-EEEeCCCCHHHHHHHHHHHhcCCC-CCccCCHHHHHHhcCCCcHHHHHHH---HHHHHHHHHHhCCCCccHH
Q 007214 332 RPGRIDR-RLYIGLPDAKQRVQIFDVHSAGKQ-LAEDVNFEELVFRTVGFSGADIRNL---VNESGIMSVRKGHSKIQQQ 406 (612)
Q Consensus 332 rpgRFd~-~I~v~~Pd~~eR~~Il~~~l~~~~-l~~dvdl~~La~~t~G~sgadL~~l---v~~A~~~A~r~~~~~It~~ 406 (612)
+ ||.. .+.|++++.+++.+||+..+.... .-.+.-++.+|+..+.. .+|++.+ |+.|+.. ++...|+.+
T Consensus 924 S--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~-SGDARKALDILRrAgEi---kegskVT~e 997 (1164)
T PTZ00112 924 S--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV-SGDIRKALQICRKAFEN---KRGQKIVPR 997 (1164)
T ss_pred h--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHhh---cCCCccCHH
Confidence 7 7754 588999999999999998876431 11222255666644432 2355544 4444433 344579999
Q ss_pred HHHHHHHHH
Q 007214 407 DIVDVLDKQ 415 (612)
Q Consensus 407 dl~~Al~~~ 415 (612)
|+.+|+.+.
T Consensus 998 HVrkAleei 1006 (1164)
T PTZ00112 998 DITEATNQL 1006 (1164)
T ss_pred HHHHHHHHH
Confidence 999998765
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2e-13 Score=155.80 Aligned_cols=209 Identities=18% Similarity=0.330 Sum_probs=144.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCee---EEecc--
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV---FASGA-- 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i---~vs~s-- 238 (612)
+..+.+|+||+|++.+++.|...+. .. +.+..+||+||||+|||++|+++|+.+..+-- .-.|.
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~---~~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIK---SN--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 5678999999999988877766554 22 45678999999999999999999998754211 00111
Q ss_pred --------cccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC
Q 007214 239 --------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT 303 (612)
Q Consensus 239 --------~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 303 (612)
++... ...+...+|.+.+.+.. ....|++|||+|.+.. ...+.|+..|+...
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----------~A~NALLKtLEEPP--- 146 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----------SAFNALLKTLEEPP--- 146 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----------HHHHHHHHHhhcCC---
Confidence 11111 11234457777776653 2347999999998842 36788998888643
Q ss_pred CcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCcc-CCHHHHHHhcCCCcHH
Q 007214 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFSGA 382 (612)
Q Consensus 304 ~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~sga 382 (612)
..+++|++|+.++.|.+.+++ |+ ..+.|.+|+.++..++++..+....+..+ ..+..++..+.| +.+
T Consensus 147 --------~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 147 --------KHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred --------CceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 236778888889999999998 88 58999999999999998876654443322 225667766554 667
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 383 DIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 383 dL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
++.++++.+...+ ...|+.+++.+++
T Consensus 215 ~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 215 DALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 7777777655432 2348887776643
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.9e-13 Score=145.81 Aligned_cols=210 Identities=19% Similarity=0.269 Sum_probs=139.0
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc----
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA---- 238 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s---- 238 (612)
++..+.+|+|++|++.+++.+...+. +. +.|.++|||||||+|||++|+++|+.+..+.....+.
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~---~~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIE---NN--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 35678999999999987666555443 32 3567899999999999999999999875532211111
Q ss_pred ---cccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 239 ---EFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 239 ---~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
++......+...++.+++.+.. ..+.|++|||+|.+.. ..++.++..++...
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------~~~~~ll~~le~~~----------- 136 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------AAFNAFLKTLEEPP----------- 136 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------HHHHHHHHHHhCCC-----------
Confidence 1111111223457777776643 2357999999998742 24677777776522
Q ss_pred ccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHH
Q 007214 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNE 390 (612)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~ 390 (612)
...++|.+|+.+..+.+++.+ |+ ..++++.|+.++...++...+...... ++..+..++..+.| +.+.+.+.++.
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred CceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 224666667778888889887 76 478999999999998888766554432 23346777776544 66666666665
Q ss_pred HHHHHHHhCCCCccHHHHHHHH
Q 007214 391 SGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al 412 (612)
....+ +.. |+.+++.+.+
T Consensus 213 l~~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 213 VVTFC---GKN-ITRQAVTENL 230 (367)
T ss_pred HHHhc---CCC-CCHHHHHHHh
Confidence 44333 333 8877776654
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3e-13 Score=153.20 Aligned_cols=211 Identities=18% Similarity=0.231 Sum_probs=147.7
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS------ 236 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs------ 236 (612)
.++.+.+|+||+|++.+++.|...+.. .+.+.++||+||+|+|||++|+++|+.++...-..+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 467789999999999888777665542 246789999999999999999999998865321111
Q ss_pred -c--------------ccccch---hhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 007214 237 -G--------------AEFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (612)
Q Consensus 237 -~--------------s~~~~~---~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~ 294 (612)
| .++... ...+...+|.+.+.+... ...|++|||+|.+. ....|.|+.
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls----------~~a~naLLK 154 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS----------TAAFNALLK 154 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC----------HHHHHHHHH
Confidence 1 111111 112345577777766532 34799999999884 235788888
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCcc-CCHHHHH
Q 007214 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELV 373 (612)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La 373 (612)
.|+.... .+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++..+.++..+......-+ ..+..|+
T Consensus 155 tLEePp~-----------~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 155 TLEEPPP-----------HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred HHHhCCC-----------CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8876432 35666777777888888887 87 57999999999999999887765543322 2356667
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
+.+.| +.+++.++++.+... +...|+.+++.+.+.
T Consensus 221 ~~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 221 RAAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 66554 788888888776533 234699988877653
No 114
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=4.1e-13 Score=148.08 Aligned_cols=219 Identities=14% Similarity=0.223 Sum_probs=143.1
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEeccccc
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFT 241 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~~~ 241 (612)
+.||++.+..+.-......+..+..+| | ....+++||||+|||||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 478999886665444444444444444 1 133569999999999999999999854 5678899998887
Q ss_pred chhhhhHH----HHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 242 DSEKSGAA----RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 242 ~~~~~~~~----~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
........ .+....+.. ..+.+|+|||++.+.++ ......+..+++.+.... . .+|
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k-----~~~~e~lf~l~N~~~~~~------------k-~iI 243 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYK-----EKTNEIFFTIFNNFIEND------------K-QLF 243 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCC-----HHHHHHHHHHHHHHHHcC------------C-cEE
Confidence 65322211 122222222 34579999999988532 222333444444433211 1 344
Q ss_pred EecCC-CC---CccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCC---CccCCHHHHHHhcCCCcHHHHHHHH
Q 007214 318 CATNR-PD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQL---AEDVNFEELVFRTVGFSGADIRNLV 388 (612)
Q Consensus 318 aaTN~-p~---~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l---~~dvdl~~La~~t~G~sgadL~~lv 388 (612)
.|+|. |. .+++.|.+ ||. ..+.+.+|+.++|.+|++..+....+ -++.-+..|+....| +++.|.+++
T Consensus 244 ltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL 320 (450)
T PRK14087 244 FSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSV 320 (450)
T ss_pred EECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHH
Confidence 45554 43 35778888 884 58889999999999999988865432 122235677777665 889999999
Q ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHH
Q 007214 389 NESGIMSVRKG-HSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 389 ~~A~~~A~r~~-~~~It~~dl~~Al~~~ 415 (612)
+.+...+.... ...|+.+.+.+++...
T Consensus 321 ~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 321 SRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 98876665542 2579999888887653
No 115
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.51 E-value=4.5e-13 Score=134.26 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=134.2
Q ss_pred cCCcccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
...++.+++++|.+..|+.|.+-.. |+.. .+..++||||++|||||+++||+..++ |..++.++..+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 3457899999999998887765554 3433 367899999999999999999998865 77888887666
Q ss_pred ccchhhhhHHHHHHHHHHHh-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 240 FTDSEKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 240 ~~~~~~~~~~~ir~lF~~A~-~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
+.. +..+++..+ ...+-|||+|++- + ++.+.....|-..|+|.... .+.||++.|
T Consensus 91 L~~--------l~~l~~~l~~~~~kFIlf~DDLs-F--------e~~d~~yk~LKs~LeGgle~-------~P~NvliyA 146 (249)
T PF05673_consen 91 LGD--------LPELLDLLRDRPYKFILFCDDLS-F--------EEGDTEYKALKSVLEGGLEA-------RPDNVLIYA 146 (249)
T ss_pred hcc--------HHHHHHHHhcCCCCEEEEecCCC-C--------CCCcHHHHHHHHHhcCcccc-------CCCcEEEEE
Confidence 554 445555544 3346899999974 2 12223456677777875533 357899999
Q ss_pred ecCCCCCcccccc----------CC-----------CceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccC-C----HHHH
Q 007214 319 ATNRPDELDLEFV----------RP-----------GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-N----FEEL 372 (612)
Q Consensus 319 aTN~p~~LD~aLl----------rp-----------gRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-d----l~~L 372 (612)
|+|+.+.++..+. .| .||...|.|..|+.++-.+|++.++....+.-+. + ....
T Consensus 147 TSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 147 TSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQW 226 (249)
T ss_pred ecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9998654433211 11 4999999999999999999999998755543321 1 1233
Q ss_pred HHhcCCCcHHHHHHHHH
Q 007214 373 VFRTVGFSGADIRNLVN 389 (612)
Q Consensus 373 a~~t~G~sgadL~~lv~ 389 (612)
|....|.||+--.+.++
T Consensus 227 a~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 227 ALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 44455666665555554
No 116
>PRK06620 hypothetical protein; Validated
Probab=99.51 E-value=6.5e-13 Score=132.70 Aligned_cols=199 Identities=14% Similarity=0.202 Sum_probs=127.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCcc-CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF-VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~-p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
..++.+|++.+..+.-......+..+...| +..+ .+.++||||||||||+|++++++..+..++. .....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~- 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN- 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-
Confidence 456779999988875555555555554333 2222 2679999999999999999999987753322 11110
Q ss_pred hhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 007214 243 SEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (612)
Q Consensus 243 ~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (612)
...+ ....+|+|||||.+- ...+..+++.+... ...+|++++..
T Consensus 80 ---------~~~~-----~~~d~lliDdi~~~~----------~~~lf~l~N~~~e~------------g~~ilits~~~ 123 (214)
T PRK06620 80 ---------EEIL-----EKYNAFIIEDIENWQ----------EPALLHIFNIINEK------------QKYLLLTSSDK 123 (214)
T ss_pred ---------hhHH-----hcCCEEEEeccccch----------HHHHHHHHHHHHhc------------CCEEEEEcCCC
Confidence 0111 123689999999541 12344454444321 12577777766
Q ss_pred CCC--ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 323 PDE--LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 323 p~~--LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
|.. + ++|++ |+. ..+.+..|+.+.+..+++..+....+. ++.-++.|+.+..+ +.+.+.++++.....+..
T Consensus 124 p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 124 SRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred ccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 554 5 77887 885 379999999999999998877644332 22236677777654 788888888875544444
Q ss_pred hCCCCccHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVL 412 (612)
Q Consensus 398 ~~~~~It~~dl~~Al 412 (612)
.+ ..||...+.+++
T Consensus 200 ~~-~~it~~~~~~~l 213 (214)
T PRK06620 200 SK-RKITISLVKEVL 213 (214)
T ss_pred cC-CCCCHHHHHHHh
Confidence 43 568887776654
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.7e-13 Score=149.88 Aligned_cols=202 Identities=20% Similarity=0.257 Sum_probs=140.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------- 231 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~----------- 231 (612)
.++.+.+|+||+|++.+++.|...+. . .+.|..+|||||||+|||++|+++|+.+..+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~---~--------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALD---N--------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHH---c--------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 35778999999999999888777654 2 1466778999999999999999999886321
Q ss_pred -------------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 007214 232 -------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (612)
Q Consensus 232 -------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~ 294 (612)
++.++++. ..+...++++...+.. ....|++|||+|.+. ...++.|+.
T Consensus 75 ~~C~~~~~~~h~dv~eldaas-----~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt----------~~A~NALLK 139 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS-----NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT----------KEAFNALLK 139 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc-----ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHH
Confidence 22222111 1123456666655432 123699999999884 236788999
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHH
Q 007214 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (612)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (612)
.|+.... .+.+|.+|+.+..|.+++++ |+ ..++|.+++.++..+.++..+...... .+..+..++
T Consensus 140 ~LEEpp~-----------~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia 205 (535)
T PRK08451 140 TLEEPPS-----------YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA 205 (535)
T ss_pred HHhhcCC-----------ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8887432 35677777888999999998 86 689999999999888888776654332 223466777
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~ 409 (612)
..+.| +.+++.+++..+...+ ...|+.+++.
T Consensus 206 ~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~ 236 (535)
T PRK08451 206 RSGNG-SLRDTLTLLDQAIIYC----KNAITESKVA 236 (535)
T ss_pred HHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHH
Confidence 76555 8888888887766554 2345655554
No 118
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.50 E-value=3.4e-13 Score=143.16 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=147.2
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-------CCeeEEecc
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-------LPFVFASGA 238 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-------~~~i~vs~s 238 (612)
+...|.+|+|++++|..|.. ...+| ...|+||.||+|||||++||+++..+. .||. .+..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~---~~~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALIL---NVIDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHH---hccCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 35679999999988876643 33445 335899999999999999999976541 2332 0000
Q ss_pred --c-----c-------------------cch-hhhhHHH------HHHHHHHHh---------hcCCeEEEEccchhhhc
Q 007214 239 --E-----F-------------------TDS-EKSGAAR------INEMFSIAR---------RNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 239 --~-----~-------------------~~~-~~~~~~~------ir~lF~~A~---------~~~P~ILfIDEiD~l~~ 276 (612)
+ . ... .+....+ +...|.... +....+|||||++.+..
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0 0 000 0001111 222222221 11236999999998842
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCcc---cCCcccccccccEEEEEecCCCC-CccccccCCCceeEEEEeCCCC-HHHHH
Q 007214 277 RHARKDPRRRATFEALIAQLDGDKE---RTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPD-AKQRV 351 (612)
Q Consensus 277 ~~~~~~~~~~~~l~~LL~~ld~~~~---~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~Pd-~~eR~ 351 (612)
.+++.|+..|+.... +.+ .....+..+++|+|.|..+ .++++++. ||..++.++.|+ .+.+.
T Consensus 159 ----------~~Q~~LLeam~e~~~~ier~G-~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 ----------HLVDILLDSAASGWNTVEREG-ISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred ----------HHHHHHHHHHHhCCeEEeeCC-eeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 356667777754221 111 1133456789999988765 68999999 999999999997 59999
Q ss_pred HHHHHHhcCC--CCC-----------------------ccCC--------HHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 352 QIFDVHSAGK--QLA-----------------------EDVN--------FEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 352 ~Il~~~l~~~--~l~-----------------------~dvd--------l~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
+|++...... +.. .++. +.+++..+.--+++--..+++.|..+|+-+
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 226 KIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred HHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 9998653211 000 0010 233344443345666667888899999999
Q ss_pred CCCCccHHHHHHHHHHHHHhccC
Q 007214 399 GHSKIQQQDIVDVLDKQLLEGMG 421 (612)
Q Consensus 399 ~~~~It~~dl~~Al~~~~~~~~~ 421 (612)
|+..|+.+|+..+..-++.++..
T Consensus 306 GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 306 GRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999988876653
No 119
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3e-13 Score=153.48 Aligned_cols=203 Identities=19% Similarity=0.273 Sum_probs=142.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
++.+.+|+||+|++++++.|...+. . .+.+..+|||||||+|||++|+++|+.++.+
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~---~--------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAID---T--------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 5678899999999988877776554 2 1467789999999999999999999987542
Q ss_pred ------------eeEEecccccchhhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 232 ------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
++.+++.. ..+...++++.+.+... ...|++|||+|.+.. ...|.|+..
T Consensus 78 ~c~~i~~g~~~d~~eid~~s-----~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~----------~a~naLLk~ 142 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS-----NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST----------NAFNALLKT 142 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC-----ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH----------HHHHHHHHH
Confidence 22222111 12334577776665432 236999999998842 357889998
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
|+... ..+++|.+||.++.|.+.+++ |+ ..++|..++.++-...+...++...+. ++..+..+++
T Consensus 143 LEepp-----------~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 143 LEEPP-----------PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred HHcCC-----------CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 88643 246788888889999999988 77 588999999988888887766554432 2234667777
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
.+.| +.+++.+++..+...+ + ..|+.+++...
T Consensus 209 ~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 209 KGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 7665 6677777776554332 2 34777766544
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.4e-13 Score=148.20 Aligned_cols=209 Identities=20% Similarity=0.296 Sum_probs=140.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------CeeE-E
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVF-A 235 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-------~~i~-v 235 (612)
+..+.+|+|++|++.+.+.|...+. +. +.+..+|||||||+|||++|+.+|+.++. |+-. .
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~---~~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVK---LQ--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 5678899999999988777665553 22 35667899999999999999999998753 1111 0
Q ss_pred ecc--------cccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 007214 236 SGA--------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (612)
Q Consensus 236 s~s--------~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~ 300 (612)
+|. ++... ...+...++.+.+.+.. ..+.|++|||+|.+.. ...+.|+..++...
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~----------~a~naLLk~LEepp 147 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK----------EAFNALLKTLEEPP 147 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH----------HHHHHHHHHHhcCC
Confidence 110 11100 11223345565555442 2357999999998842 24678888877532
Q ss_pred ccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCc-cCCHHHHHHhcCCC
Q 007214 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGF 379 (612)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~ 379 (612)
..+++|.+|+.++.+.+++.+ |+ ..+.+.+|+.++...+++..++...+.- +..+..++..+.|
T Consensus 148 -----------~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G- 212 (486)
T PRK14953 148 -----------PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG- 212 (486)
T ss_pred -----------CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 225666667778888888887 77 4799999999999999998776554432 2235667766554
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 380 sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+.+++.++++.+... +...|+.+++.+++
T Consensus 213 ~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 213 GMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 677777777766543 23468888877754
No 121
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=2.8e-13 Score=151.89 Aligned_cols=203 Identities=20% Similarity=0.296 Sum_probs=139.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~------------- 230 (612)
+..+.+|++++|++.+++.|...+. . .+.++++||+||||+|||++|+++|+.+..
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~---~--------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL---N--------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 5678899999999988777665442 2 245688999999999999999999998743
Q ss_pred -----------CeeEEecccccchhhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 231 -----------~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
.++.++++. ..+...+|.+.+.+... ...|++|||+|.+.. ...+.|+..
T Consensus 78 sCr~i~~~~h~DiieIdaas-----~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~----------~A~NaLLKt 142 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS-----NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST----------SAWNALLKT 142 (605)
T ss_pred HHHHHHcCCCCceEEecccc-----ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH----------HHHHHHHHH
Confidence 112222111 12334467666655432 236999999998831 246788888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
|+... ..+++|++|+.+..+.+.+++ |+ ..+++.+|+.++....++..+...... ++..+..++.
T Consensus 143 LEEPp-----------~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~ 208 (605)
T PRK05896 143 LEEPP-----------KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIAD 208 (605)
T ss_pred HHhCC-----------CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 87633 236777788888999999998 87 479999999999998888776544321 2223667776
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
.+.| +.+++.++++.+... .+ ..|+.+++.+.
T Consensus 209 lS~G-dlR~AlnlLekL~~y---~~-~~It~e~V~el 240 (605)
T PRK05896 209 LADG-SLRDGLSILDQLSTF---KN-SEIDIEDINKT 240 (605)
T ss_pred HcCC-cHHHHHHHHHHHHhh---cC-CCCCHHHHHHH
Confidence 7655 677777777764433 23 23777766653
No 122
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.50 E-value=5.8e-13 Score=139.84 Aligned_cols=204 Identities=17% Similarity=0.217 Sum_probs=130.3
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-----CCeeEEec
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASG 237 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-----~~~i~vs~ 237 (612)
++..+.+|+|++|++++++.+...+. .+ ...+++|+||||||||++++++++++. .+++.+++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~---~~---------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVK---EK---------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 36678899999999987776665543 22 122589999999999999999999873 23455544
Q ss_pred ccccchhhhhHHHHHHHHH-HHhh-----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 238 AEFTDSEKSGAARINEMFS-IARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 238 s~~~~~~~~~~~~ir~lF~-~A~~-----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
++-.. ...++..+. .+.. ..+.+|+|||+|.+.. ...+.|+..++.....
T Consensus 77 ~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----------~~~~~L~~~le~~~~~--------- 132 (319)
T PRK00440 77 SDERG-----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----------DAQQALRRTMEMYSQN--------- 132 (319)
T ss_pred ccccc-----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------HHHHHHHHHHhcCCCC---------
Confidence 33221 111222221 1111 2356999999998842 1234555555543321
Q ss_pred ccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHH
Q 007214 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNE 390 (612)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~ 390 (612)
..+|.++|.+..+.+++.+ |+. .+++++|+.++...+++.++...... .+..+..++..+.| +.+.+.+.++.
T Consensus 133 --~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 133 --TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred --CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 3556667777777777877 774 68999999999999999887654432 22346777777554 44444444443
Q ss_pred HHHHHHHhCCCCccHHHHHHHHH
Q 007214 391 SGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
++ .. ...||.+++..++.
T Consensus 207 ~~---~~--~~~it~~~v~~~~~ 224 (319)
T PRK00440 207 AA---AT--GKEVTEEAVYKITG 224 (319)
T ss_pred HH---Hc--CCCCCHHHHHHHhC
Confidence 33 22 35799999887764
No 123
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.5e-13 Score=148.85 Aligned_cols=209 Identities=17% Similarity=0.236 Sum_probs=142.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-------eeEE-
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVFA- 235 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------~i~v- 235 (612)
+..+.+|+||+|++.+++.|+..+. +. +.+..+|||||||+|||++|+++|+.++.+ .-.+
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~---~~--------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIE---SN--------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 5678899999999988887666554 22 356789999999999999999999987642 1100
Q ss_pred ec--------ccccchh---hhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 007214 236 SG--------AEFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (612)
Q Consensus 236 s~--------s~~~~~~---~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~ 300 (612)
+| .++.... ..+...++.+.+.+.. ....|++|||+|.+. ...+|.|+..++...
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls----------~~a~naLLK~LEepp 147 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS----------NSAFNALLKTIEEPP 147 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC----------HHHHHHHHHhhccCC
Confidence 00 0111111 1223345665544332 345799999999883 235788888887532
Q ss_pred ccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCC
Q 007214 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (612)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (612)
..+++|++|+.+..+.+++++ |+. .+++.+|+.++..++++..+....+. .+..+..|++.+.|
T Consensus 148 -----------~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 148 -----------PYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred -----------CCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 236777777888899999988 874 78999999999999988776544432 22336667776555
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 380 sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+.+++.+++..+...+ ...|+.+++.+++
T Consensus 213 dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 213 SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 7888888887665432 2458887776654
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=99.48 E-value=3.6e-12 Score=129.09 Aligned_cols=212 Identities=16% Similarity=0.194 Sum_probs=130.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
-.++.+|++.+.... ...+..+..+...+ +......++||||+|||||+|++++++++ +..+++++..++
T Consensus 12 ~~~~~tfdnF~~~~~-~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 12 LRDDATFANYYPGAN-AAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CCCcccccccCcCCh-HHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 356778999984432 22222222222211 11134679999999999999999998754 677888888776
Q ss_pred cchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 241 ~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
.... ..+.+..+.. .+|+|||++.+.++ ......+-.+++.+.. . ...+|++++
T Consensus 85 ~~~~-------~~~~~~~~~~--d~LiiDDi~~~~~~-----~~~~~~Lf~l~n~~~~---~---------g~~ilits~ 138 (234)
T PRK05642 85 LDRG-------PELLDNLEQY--ELVCLDDLDVIAGK-----ADWEEALFHLFNRLRD---S---------GRRLLLAAS 138 (234)
T ss_pred Hhhh-------HHHHHhhhhC--CEEEEechhhhcCC-----hHHHHHHHHHHHHHHh---c---------CCEEEEeCC
Confidence 6431 1222223222 58999999988532 1222334444444322 1 124666666
Q ss_pred CCCCC---ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007214 321 NRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 321 N~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~ 394 (612)
..|.. ..+.|++ ||. ..+.+..|+.++|.++++..+....+. ++.-++.|+++.. -+.+.+.++++.....
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~ 215 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQA 215 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 55543 3678888 884 678889999999999999555443332 2223566676654 4888899888877654
Q ss_pred HHHhCCCCccHHHHHHHH
Q 007214 395 SVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 395 A~r~~~~~It~~dl~~Al 412 (612)
+... ...||..-+.+++
T Consensus 216 ~l~~-~~~it~~~~~~~L 232 (234)
T PRK05642 216 SLQA-QRKLTIPFLKETL 232 (234)
T ss_pred HHHc-CCcCCHHHHHHHh
Confidence 4443 3568877666554
No 125
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=7.8e-13 Score=143.37 Aligned_cols=187 Identities=24% Similarity=0.308 Sum_probs=117.9
Q ss_pred ccccc-eecCcccHHHHHHHHH-HhCCchh----hhhcCCc-cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 168 SMYKE-VVLGGDVWDLLDELMI-YMGNPMQ----YYERGVQ-FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 168 ~~f~d-vvG~~e~k~~L~elv~-~l~~p~~----~~~~g~~-~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
..+++ |+|++++++.+...+. ..+.-.. -...+.. .+.++||+||||||||++|+++|..++.||..+++..+
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 34444 5899999988876552 1111000 0000111 24679999999999999999999999999999998887
Q ss_pred cchh--hhh-HHHHHHHHHHH----hhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCccc--CCccc
Q 007214 241 TDSE--KSG-AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKER--TGIDR 307 (612)
Q Consensus 241 ~~~~--~~~-~~~ir~lF~~A----~~~~P~ILfIDEiD~l~~~~~~~----~~~~~~~l~~LL~~ld~~~~~--~~~~~ 307 (612)
.... +.. ...+..++..+ ....|+||||||+|.+..++... +.....+++.||..|++.... ....+
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 6432 221 22334443322 23457899999999997643221 112235778888888765422 11122
Q ss_pred ccccccEEEEEecCCCC--------------------------------------------------CccccccCCCcee
Q 007214 308 FSLRQAVIFICATNRPD--------------------------------------------------ELDLEFVRPGRID 337 (612)
Q Consensus 308 ~~~~~~ViVIaaTN~p~--------------------------------------------------~LD~aLlrpgRFd 337 (612)
.....+.++|.|+|-.. .+.|+|+ ||+|
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld 310 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLP 310 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCC
Confidence 23335677777777510 0224444 5999
Q ss_pred EEEEeCCCCHHHHHHHHHH
Q 007214 338 RRLYIGLPDAKQRVQIFDV 356 (612)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~~ 356 (612)
..+.+.+.+.+...+|+..
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTK 329 (413)
T ss_pred eEeecCCCCHHHHHHHHHH
Confidence 9999999999999999875
No 126
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.48 E-value=5.9e-13 Score=133.46 Aligned_cols=201 Identities=20% Similarity=0.290 Sum_probs=120.5
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEecccc
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEF 240 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~~ 240 (612)
++.||++.+-.+.-+.....+.....++. .....++||||+|+|||+|++|++++. +..++++++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 56789999766655555555544444442 123459999999999999999998864 677999999888
Q ss_pred cchhhhhH--HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 241 TDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 241 ~~~~~~~~--~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
........ ..+..+.+..+ ...+|+||++|.+.++ ......+..+++.+.. .. .-+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-----~~~q~~lf~l~n~~~~---~~---------k~li~t 136 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-----QRTQEELFHLFNRLIE---SG---------KQLILT 136 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-----HHHHHHHHHHHHHHHH---TT---------SEEEEE
T ss_pred HHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-----hHHHHHHHHHHHHHHh---hC---------CeEEEE
Confidence 76632221 12333333333 3469999999999532 2223333444443322 11 235555
Q ss_pred ecCCCCC---ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCCccCC-HHHHHHhcCCCcHHHHHHHHHHHH
Q 007214 319 ATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIRNLVNESG 392 (612)
Q Consensus 319 aTN~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~~lv~~A~ 392 (612)
+...|.. +++.|.+ ||. ..+.+..|+.+.|.+|++..+....+.-+.+ ++.|+++. .-+.++|..+++...
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~-~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRF-RRDVRELEGALNRLD 213 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHT-TSSHHHHHHHHHHHH
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 5555654 4667777 884 4899999999999999998876555442222 45566554 347888888888765
Q ss_pred HHH
Q 007214 393 IMS 395 (612)
Q Consensus 393 ~~A 395 (612)
..+
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 127
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.48 E-value=4.3e-13 Score=140.48 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=100.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh-hhhHHH------------HHHHHHHHhhcCCeEEEEcc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAAR------------INEMFSIARRNAPAFVFVDE 270 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~-~~~~~~------------ir~lF~~A~~~~P~ILfIDE 270 (612)
.+.|||.||||||||++++++|.+++.|++.+++....... ..|... ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 46799999999999999999999999999999988765541 111100 1123344443 468999999
Q ss_pred chhhhccCCCCChhHHHHHHHHHHHhcC--Cc-ccCCcccccccccEEEEEecCCCC------------CccccccCCCc
Q 007214 271 IDAIAGRHARKDPRRRATFEALIAQLDG--DK-ERTGIDRFSLRQAVIFICATNRPD------------ELDLEFVRPGR 335 (612)
Q Consensus 271 iD~l~~~~~~~~~~~~~~l~~LL~~ld~--~~-~~~~~~~~~~~~~ViVIaaTN~p~------------~LD~aLlrpgR 335 (612)
+|..- +. +++.|...|+. .. -......+....++.||||+|..+ .++.|++. |
T Consensus 143 in~a~-------p~---~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--R 210 (327)
T TIGR01650 143 YDAGR-------PD---VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--R 210 (327)
T ss_pred hhccC-------HH---HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--h
Confidence 99773 22 34444444442 11 011122344556799999999854 36889998 9
Q ss_pred eeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 336 IDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 336 Fd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
|-..+.+++|+.++-.+|+.....
T Consensus 211 F~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 211 WSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeeEeeCCCCCHHHHHHHHHhhcc
Confidence 988899999999999999987654
No 128
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=2.3e-13 Score=157.76 Aligned_cols=173 Identities=19% Similarity=0.243 Sum_probs=117.0
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhh-----
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS----- 246 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~----- 246 (612)
.|+|++++++.|.+.+...+.... . ..++...+||+||||||||++|+++|+.++.+++.++|+++.+....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 478999888888777764332100 0 01223468999999999999999999999999999999998653110
Q ss_pred ------hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 247 ------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 247 ------~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
+...-..+.+..+.+..|||||||+|.+. ....+.|+..|+...-.....+...-.++++|+||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhh----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 11111223333445556999999999884 23677888888753322111111223568999999
Q ss_pred CCC-------------------------CCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 321 NRP-------------------------DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 321 N~p-------------------------~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
|.- ..+.|.|+. |+|..|.|++.+.++..+|+..++.
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 932 124566766 9999999999999999999876654
No 129
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=6.8e-13 Score=144.44 Aligned_cols=214 Identities=17% Similarity=0.228 Sum_probs=140.6
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCee---------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--------- 233 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i--------- 233 (612)
++..+.+|++|+|++.+++.|+..+. + .+.|..+||+||||+|||++|+++|+.+...-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~---~--------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLR---M--------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHH---h--------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 35678899999999998887766554 2 246778999999999999999999998865210
Q ss_pred -EEeccc--------------ccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHH
Q 007214 234 -FASGAE--------------FTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291 (612)
Q Consensus 234 -~vs~s~--------------~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~ 291 (612)
.-.|.. +... ...+...++++.+.+.. ....|++|||+|.+.. ...+.
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------~~~~~ 146 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------AAFNA 146 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------HHHHH
Confidence 011111 1111 11223456666555532 1236999999998842 24567
Q ss_pred HHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHH
Q 007214 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFE 370 (612)
Q Consensus 292 LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~ 370 (612)
|+..++.... ..++|.+|+.+..+-+++.+ |+ ..+++.+++.++-.+.++..++..... ++..+.
T Consensus 147 LLk~LEep~~-----------~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~ 212 (397)
T PRK14955 147 FLKTLEEPPP-----------HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQ 212 (397)
T ss_pred HHHHHhcCCC-----------CeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8887765332 24566666677888888887 77 478999999998888888766544321 222356
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHH-hCCCCccHHHHHHHH
Q 007214 371 ELVFRTVGFSGADIRNLVNESGIMSVR-KGHSKIQQQDIVDVL 412 (612)
Q Consensus 371 ~La~~t~G~sgadL~~lv~~A~~~A~r-~~~~~It~~dl~~Al 412 (612)
.++..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 213 ~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 213 LIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 67766554 667777777766555432 224578888887665
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=9.9e-13 Score=145.11 Aligned_cols=204 Identities=17% Similarity=0.222 Sum_probs=136.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
+..+.+|+||+|++.+++.|...+. .. +.|..+|||||||+|||++|+++|+.+..+
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~---~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR---FN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---cC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 4567899999999988776665553 22 456789999999999999999999987432
Q ss_pred -------------eeEEecccccchhhhhHHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 007214 232 -------------FVFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (612)
Q Consensus 232 -------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~ 294 (612)
++.+++.. ..+...++.+-+... .....|++|||+|.+.. ...+.|+.
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~-----~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------~~~n~LLk 143 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGAS-----HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------EAFNSLLK 143 (451)
T ss_pred HHHHHHhcCCCCceEEeeccc-----cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----------HHHHHHHH
Confidence 22222211 112233443333222 23468999999998842 24678888
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHH
Q 007214 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (612)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (612)
.|+.... .+++|++||.+..|.+++++ |+ ..+++..++.++..+.++..+...... ++..+..|+
T Consensus 144 ~lEep~~-----------~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 144 TLEEPPQ-----------HVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HhhcCCC-----------CceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8876332 35777778888899999988 88 578999999999998888766544332 223466777
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
..+.| +.+++.++++..... .+ ..|+.+++.+++
T Consensus 210 ~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 210 RAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 77654 555555555543322 23 348888776655
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.46 E-value=1.2e-12 Score=152.79 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=119.2
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCC---ccCc-eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhh-
Q 007214 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGV---QFVR-GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK- 245 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~---~~p~-gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~- 245 (612)
+.|+|++++++.+...+...+ .|. ..|. .+||+||||||||++|+++|+.++.+++.++++++.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~-------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR-------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh-------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 457888887777766655432 122 2344 4789999999999999999999999999999998765210
Q ss_pred ----------hhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 246 ----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 246 ----------~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
.+......+.+..+.+..+||+|||+|.+. ....+.|+..|+...-..+..+.....+++
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~i 596 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH----------PDIYNILLQVMDYATLTDNNGRKADFRNVI 596 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC----------HHHHHHHHHhhccCeeecCCCcccCCCCCE
Confidence 112222334444555667899999999773 236778888887643222212222235688
Q ss_pred EEEecCCCC-------------------------CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 316 FICATNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 316 VIaaTN~p~-------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
+|+|||... .+.|.|+. |||..|.|.+.+.++..+|++..+.
T Consensus 597 ii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 597 LIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred EEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 999998732 14566665 9999999999999999999987764
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.9e-12 Score=147.64 Aligned_cols=206 Identities=21% Similarity=0.278 Sum_probs=138.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeE----Eecc-
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF----ASGA- 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~----vs~s- 238 (612)
+..+.+|++++|++++++.|...+..- +.+.++||+||||||||++|+++|+.++..... -.|.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 566789999999999888877766531 245689999999999999999999988652110 0111
Q ss_pred -------------cccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 239 -------------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 239 -------------~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
++... ...+...+|++.+.+.. ....|++|||+|.+. ....+.||..|+.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------~~a~naLLK~LEe 147 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------TAAFNALLKTLEE 147 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------HHHHHHHHHHHhc
Confidence 11111 12344567888776653 234699999999883 2367889998886
Q ss_pred CcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcC
Q 007214 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTV 377 (612)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~ 377 (612)
.. ..+++|++|+.++.+-+.+++ |+ ..++|..++.++....+...+.+.... .+..+..++..+.
T Consensus 148 Pp-----------~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 148 PP-----------PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred CC-----------cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 33 236777778888888889988 87 678898998888777777665543322 1223667777765
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 007214 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (612)
Q Consensus 378 G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~ 410 (612)
| +.+++.++++...+. . ..|+.+++.+
T Consensus 214 G-~lr~A~~lLeklsL~---~--~~It~e~V~~ 240 (620)
T PRK14948 214 G-GLRDAESLLDQLSLL---P--GPITPEAVWD 240 (620)
T ss_pred C-CHHHHHHHHHHHHhc---c--CCCCHHHHHH
Confidence 5 456666666654332 1 2466666554
No 133
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.45 E-value=3.3e-12 Score=137.25 Aligned_cols=224 Identities=19% Similarity=0.259 Sum_probs=151.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEecc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s 238 (612)
-.++.||++.+..+.-.........+..+|. .....++||||+|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4678999999988877666666666666652 234569999999999999999998876 3358888888
Q ss_pred cccchh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 239 EFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 239 ~~~~~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
.|.... ......-.+-|+.-. .-.+++||+++.+.++... +.+.-.++|.+... . .-+|+
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-qeefFh~FN~l~~~----~------------kqIvl 213 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-QEEFFHTFNALLEN----G------------KQIVL 213 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-HHHHHHHHHHHHhc----C------------CEEEE
Confidence 876553 221222223344433 3368999999999754211 22222333333321 1 12556
Q ss_pred EecCCCCC---ccccccCCCceeE--EEEeCCCCHHHHHHHHHHHhcCCCCCccCC-HHHHHHhcCCCcHHHHHHHHHHH
Q 007214 318 CATNRPDE---LDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIRNLVNES 391 (612)
Q Consensus 318 aaTN~p~~---LD~aLlrpgRFd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~~lv~~A 391 (612)
.+...|.. +.+.|.+ ||.. .+.+.+||.+.|..||+.......+.-+-+ +..++.+. .-+.++|..+++..
T Consensus 214 tsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~-~~nvReLegaL~~l 290 (408)
T COG0593 214 TSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRL-DRNVRELEGALNRL 290 (408)
T ss_pred EcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hccHHHHHHHHHHH
Confidence 55555654 4578888 9965 788999999999999998665444432222 45566553 45789999999988
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHH
Q 007214 392 GIMSVRKGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~~~ 417 (612)
...|...++ .||.+.+.+++.....
T Consensus 291 ~~~a~~~~~-~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 291 DAFALFTKR-AITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHhcCc-cCcHHHHHHHHHHhhc
Confidence 888877765 7999999998887654
No 134
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.45 E-value=4.5e-12 Score=131.31 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=75.9
Q ss_pred EEEEecCC------------CCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcH
Q 007214 315 IFICATNR------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSG 381 (612)
Q Consensus 315 iVIaaTN~------------p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sg 381 (612)
+||.|||+ |.-+|..|+. |+ ..|...+.+.++-++|++..+....+. .+.-++.|+.....-|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 67778886 5667777887 77 678888899999999999887655443 22236777777666677
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 007214 382 ADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 382 adL~~lv~~A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
+=--+|+.-|...|.+++...|..+|++.|-+
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 77778888899999999999999999988864
No 135
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.45 E-value=1.6e-12 Score=137.87 Aligned_cols=224 Identities=19% Similarity=0.222 Sum_probs=142.9
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-------CCCee--------
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFV-------- 233 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-------g~~~i-------- 233 (612)
.|..|+|++++|..|.- .+-+| ...+++|.|+||||||++++++++-. +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~---~~~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLL---NVIDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHH---HhcCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 38899999988766522 22233 24579999999999999999999765 33322
Q ss_pred -EEeccc----------------ccch-hh------hhHHHHHH------------HHHHHhhcCCeEEEEccchhhhcc
Q 007214 234 -FASGAE----------------FTDS-EK------SGAARINE------------MFSIARRNAPAFVFVDEIDAIAGR 277 (612)
Q Consensus 234 -~vs~s~----------------~~~~-~~------~~~~~ir~------------lF~~A~~~~P~ILfIDEiD~l~~~ 277 (612)
.-+|.. |.+. .+ .|...+.. ++.+| ...+|||||++.+..
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLED- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCH-
Confidence 000000 0110 00 01111111 11112 236999999998842
Q ss_pred CCCCChhHHHHHHHHHHHhcCCc---ccCCcccccccccEEEEEecCCCC-CccccccCCCceeEEEEeCCCCH-HHHHH
Q 007214 278 HARKDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPDA-KQRVQ 352 (612)
Q Consensus 278 ~~~~~~~~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~Pd~-~eR~~ 352 (612)
..++.|+..|+... ...+ .....+..+++|+|+|..+ .++++++. ||..++.++.|+. ++|.+
T Consensus 146 ---------~~Q~~Ll~~l~~g~~~v~r~G-~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 146 ---------HLVDVLLDVAASGWNVVEREG-ISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred ---------HHHHHHHHHHHhCCeEEEECC-EEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 35667777775432 1111 1233445689999998655 68999999 9999999999975 88999
Q ss_pred HHHHHhcCC----C----C-----------------CccCC--------HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 353 IFDVHSAGK----Q----L-----------------AEDVN--------FEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 353 Il~~~l~~~----~----l-----------------~~dvd--------l~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
|++...... . . ..++. +..++..+..-+++--..+++.|...|+.+|
T Consensus 214 IL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 214 IVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred HHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 998643210 0 0 01111 2334444443355666788999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhcc
Q 007214 400 HSKIQQQDIVDVLDKQLLEGM 420 (612)
Q Consensus 400 ~~~It~~dl~~Al~~~~~~~~ 420 (612)
+..|+.+|+..+..-++.++.
T Consensus 294 R~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 294 RTEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred CCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999998887654
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.44 E-value=8.1e-13 Score=145.74 Aligned_cols=208 Identities=20% Similarity=0.264 Sum_probs=154.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-------eeE--
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVF-- 234 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------~i~-- 234 (612)
++.+.+|+||+|++.+...|...+..- +...+.|++||.|||||++||.+|+.+++. +..
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 567899999999999988888877643 345689999999999999999999987653 111
Q ss_pred ----Ee---cccccchh---hhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 007214 235 ----AS---GAEFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (612)
Q Consensus 235 ----vs---~s~~~~~~---~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~ 300 (612)
++ ..++.+.. ..+...+|.+-+.+.. ....|.+|||+|.|. .+..|.||..++.
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------~~afNALLKTLEE-- 145 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------KQAFNALLKTLEE-- 145 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh----------HHHHHHHhccccc--
Confidence 11 11222221 2244568888777653 345799999999984 3578999998876
Q ss_pred ccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC-HHHHHHhcCCC
Q 007214 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGF 379 (612)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~ 379 (612)
++..|++|.||..++.+++.+++ |+ .++.+..-+.++....+...+.+..+..+.+ +..+++...|
T Consensus 146 ---------PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G- 212 (515)
T COG2812 146 ---------PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG- 212 (515)
T ss_pred ---------CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-
Confidence 34568999999999999999998 87 5788889999999999998888777654444 5666766665
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 380 sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
|.+|..+++..|..... ..|+.+.+.+.
T Consensus 213 s~RDalslLDq~i~~~~----~~It~~~v~~~ 240 (515)
T COG2812 213 SLRDALSLLDQAIAFGE----GEITLESVRDM 240 (515)
T ss_pred ChhhHHHHHHHHHHccC----CcccHHHHHHH
Confidence 88999999998775532 44666555443
No 137
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.5e-12 Score=134.81 Aligned_cols=190 Identities=16% Similarity=0.294 Sum_probs=133.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC-----eeEEecccccchhhhhH-----------------HHHHHHHHHHhh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP-----FVFASGAEFTDSEKSGA-----------------ARINEMFSIARR 260 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~-----~i~vs~s~~~~~~~~~~-----------------~~ir~lF~~A~~ 260 (612)
.|.++++|||||||||.+++.+++++.-+ +++++|........... .....+++....
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 56679999999999999999999887433 89999998765432211 112333333322
Q ss_pred -cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC---CCccccccCCCce
Q 007214 261 -NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRI 336 (612)
Q Consensus 261 -~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRF 336 (612)
....||++||+|.|..+.. ..+..|+...... ...|.+|+.+|.. +.+|+.+.+ +|
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~-----------~~~v~vi~i~n~~~~~~~ld~rv~s--~l 180 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN-----------KVKVSIIAVSNDDKFLDYLDPRVKS--SL 180 (366)
T ss_pred cCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc-----------ceeEEEEEEeccHHHHHHhhhhhhh--cc
Confidence 4568999999999975421 4566666655443 2348899999986 468888887 66
Q ss_pred -eEEEEeCCCCHHHHHHHHHHHhcCC----CCCccCCHHHHHH---hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 337 -DRRLYIGLPDAKQRVQIFDVHSAGK----QLAEDVNFEELVF---RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 337 -d~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~La~---~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
...|.|++.+.+|..+|++...... .+++++ ++.+|. ...| +.+-.-.+|+.|+..|.+++...++.+++
T Consensus 181 ~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v 258 (366)
T COG1474 181 GPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHV 258 (366)
T ss_pred CcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHH
Confidence 3469999999999999998766432 222221 333332 2333 44445578999999999999999999999
Q ss_pred HHHHHH
Q 007214 409 VDVLDK 414 (612)
Q Consensus 409 ~~Al~~ 414 (612)
.+|.+.
T Consensus 259 ~~a~~~ 264 (366)
T COG1474 259 REAQEE 264 (366)
T ss_pred HHHHHH
Confidence 999544
No 138
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.2e-12 Score=144.27 Aligned_cols=213 Identities=17% Similarity=0.248 Sum_probs=139.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeE---------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF--------- 234 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~--------- 234 (612)
+..+.+|++|+|++.+++.|+..+. +. +.+.++||+||||||||++|+.+|+.+...--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~---~~--------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR---MD--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH---cC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 5678999999999988887766443 22 467789999999999999999999988662100
Q ss_pred -Eeccc--------------ccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 007214 235 -ASGAE--------------FTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (612)
Q Consensus 235 -vs~s~--------------~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~L 292 (612)
-.|.. +... ...+...++.+.+.+.. ....|++|||+|.+.. ...+.|
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----------~a~naL 147 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----------AAFNAF 147 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------HHHHHH
Confidence 01111 1111 11123456666555532 2346999999998842 346788
Q ss_pred HHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHH
Q 007214 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEE 371 (612)
Q Consensus 293 L~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~ 371 (612)
+..|+.... .+++|.+|+.+..|.+.+.+ |. ..+++..++.++-...++..+...... ++..+..
T Consensus 148 LK~LEePp~-----------~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~ 213 (620)
T PRK14954 148 LKTLEEPPP-----------HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQL 213 (620)
T ss_pred HHHHhCCCC-----------CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 888877433 24566666777888888887 76 689999999999888887666543321 2334667
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHH-hCCCCccHHHHHHHH
Q 007214 372 LVFRTVGFSGADIRNLVNESGIMSVR-KGHSKIQQQDIVDVL 412 (612)
Q Consensus 372 La~~t~G~sgadL~~lv~~A~~~A~r-~~~~~It~~dl~~Al 412 (612)
|+..+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 214 La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 214 IARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 7777654 666666666655444311 124568887776654
No 139
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.1e-12 Score=145.66 Aligned_cols=209 Identities=20% Similarity=0.236 Sum_probs=137.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeE---Eecc--
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF---ASGA-- 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~---vs~s-- 238 (612)
+..+.+|+||+|++.+++.|...+.. . +.+..+||+||||+|||++|+++|+.++...-. ..|.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~---~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE---G--------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh---C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 56788999999999988887665542 1 345678999999999999999999987542110 0000
Q ss_pred ------------cccch---hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007214 239 ------------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 239 ------------~~~~~---~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~ 299 (612)
++.+. ...+...++.+.+.+.. ....|++|||+|.+.. ..++.|+..|+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----------~a~naLLk~LEep 147 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----------AAFNALLKTLEEP 147 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----------HHHHHHHHHHhcC
Confidence 11100 11122335555443332 2346999999998842 3577888888764
Q ss_pred cccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCC
Q 007214 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (612)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (612)
.. .+++|.+|+.++.+.+.+++ |+ ..+.|..++..+...+++..+....+. ++..+..|+..+.|
T Consensus 148 p~-----------~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 148 PP-----------HAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred CC-----------CeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 32 25666667777778888877 76 468899999999998888776554432 22236677777655
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 379 ~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+.+++.+.++..... +...|+.+++.+.+
T Consensus 214 -dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 214 -SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred -CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 777777777764432 23468888876644
No 140
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=8.3e-13 Score=141.81 Aligned_cols=181 Identities=25% Similarity=0.333 Sum_probs=125.8
Q ss_pred ceecCcccHHHHHHHHHH-hCCchhhhhcC-CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-h-h-h
Q 007214 172 EVVLGGDVWDLLDELMIY-MGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E-K-S 246 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~-l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~-~-~ 246 (612)
.|+|++++|+.+...+.- .+......... -..|+++||+||||||||++|+++|+.++.||+.+++++|.+. + + .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 388999999888665531 11110000000 0136899999999999999999999999999999999988864 2 3 3
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 007214 247 GAARINEMFSIAR------------------------------------------------------------------- 259 (612)
Q Consensus 247 ~~~~ir~lF~~A~------------------------------------------------------------------- 259 (612)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3455666666650
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 007214 260 -----------------------------------------------------------------------RNAPAFVFV 268 (612)
Q Consensus 260 -----------------------------------------------------------------------~~~P~ILfI 268 (612)
...-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012359999
Q ss_pred ccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC----CCCCccccccCCCceeEEEEe
Q 007214 269 DEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN----RPDELDLEFVRPGRIDRRLYI 342 (612)
Q Consensus 269 DEiD~l~~~~~--~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN----~p~~LD~aLlrpgRFd~~I~v 342 (612)
||||.++.+.. +.+.....+.+.||..++|..-+.... .-...++++||+.. .|+.|-|.|. |||...+.+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~-~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 332 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYG-MVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVEL 332 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecce-eEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 99999986542 223445568889999998855433211 12235688888753 3566667776 499999999
Q ss_pred CCCCHHHHHHHHH
Q 007214 343 GLPDAKQRVQIFD 355 (612)
Q Consensus 343 ~~Pd~~eR~~Il~ 355 (612)
..++.+...+||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999884
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.42 E-value=1e-11 Score=141.87 Aligned_cols=223 Identities=19% Similarity=0.242 Sum_probs=132.8
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeE
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVF 234 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~ 234 (612)
..+.+|++++|++...+.+. ..+..+ .+..++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~---~~ia~~---------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALL---AKVASP---------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHH---HHHhcC---------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 45789999999987655443 333222 35679999999999999999997654 467999
Q ss_pred Eecccccchh--------hhhH----HHHHHHHHH----------HhhcCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 007214 235 ASGAEFTDSE--------KSGA----ARINEMFSI----------ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (612)
Q Consensus 235 vs~s~~~~~~--------~~~~----~~ir~lF~~----------A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~L 292 (612)
++|..+.... +... ...+..+.. .......+|||||++.|.. ...+.|
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~----------~~Q~~L 285 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP----------LLQNKL 285 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH----------HHHHHH
Confidence 9987753110 0000 001111110 0011246999999998832 233455
Q ss_pred HHHhcCCccc---CCcc--------------cccccccEEEEEe-cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHH
Q 007214 293 IAQLDGDKER---TGID--------------RFSLRQAVIFICA-TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIF 354 (612)
Q Consensus 293 L~~ld~~~~~---~~~~--------------~~~~~~~ViVIaa-TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il 354 (612)
+..++..... ...+ ....+.++++|++ |+.++.++++|++ ||. .+.+++++.++..+|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 5555432100 0000 0001234566654 5668889999988 986 6789999999999999
Q ss_pred HHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHH
Q 007214 355 DVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK--------GHSKIQQQDIVDVLDK 414 (612)
Q Consensus 355 ~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~--------~~~~It~~dl~~Al~~ 414 (612)
+..+...... .+.-+..|+..+. .++..-+++..+...++.+ +...|+.+|+.+++..
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 9887754321 1222445555443 4555556665554443222 2236888998888754
No 142
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.40 E-value=1.5e-12 Score=139.86 Aligned_cols=181 Identities=22% Similarity=0.316 Sum_probs=124.4
Q ss_pred ceecCcccHHHHHHHHHH-hCCchhhhhc-CCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch--hh-h
Q 007214 172 EVVLGGDVWDLLDELMIY-MGNPMQYYER-GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EK-S 246 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~-l~~p~~~~~~-g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~--~~-~ 246 (612)
-|+|++++|+.+...+.- .+.......+ .-..|+++||+||||||||++|+++|+.++.||+.+++..+.+. .+ .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 478999998887655431 1111000011 12257899999999999999999999999999999999887652 23 2
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 007214 247 GAARINEMFSIA-------------------------------------------------------------------- 258 (612)
Q Consensus 247 ~~~~ir~lF~~A-------------------------------------------------------------------- 258 (612)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 344555555544
Q ss_pred -----------------------------------------------------------------------hhcCCeEEE
Q 007214 259 -----------------------------------------------------------------------RRNAPAFVF 267 (612)
Q Consensus 259 -----------------------------------------------------------------------~~~~P~ILf 267 (612)
+.....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 001235999
Q ss_pred EccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC----CCCCccccccCCCceeEEEE
Q 007214 268 VDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN----RPDELDLEFVRPGRIDRRLY 341 (612)
Q Consensus 268 IDEiD~l~~~~~--~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN----~p~~LD~aLlrpgRFd~~I~ 341 (612)
|||||.++.+.. +.+-....+++.||..++|..-..... .-...++++||+.. .|..|=|.|. |||...+.
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~-~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 329 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYG-MVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVE 329 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecce-eEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999986542 223445568889999998855443221 12245688888764 3555666665 59999999
Q ss_pred eCCCCHHHHHHHHH
Q 007214 342 IGLPDAKQRVQIFD 355 (612)
Q Consensus 342 v~~Pd~~eR~~Il~ 355 (612)
+..++.+...+||.
T Consensus 330 L~~L~~edL~rILt 343 (441)
T TIGR00390 330 LQALTTDDFERILT 343 (441)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999999884
No 143
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.38 E-value=5.4e-12 Score=144.89 Aligned_cols=226 Identities=19% Similarity=0.226 Sum_probs=143.0
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc--------------------
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------------------- 228 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-------------------- 228 (612)
.|.+|+|++.+|..|.-. ..+| ...||||.||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~---av~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLN---AVDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHH---hhCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 388999999888665332 2333 12479999999999999999999876
Q ss_pred ---------------CCCeeEEecccccchhhhhHHHHHHHHHHHh---------hcCCeEEEEccchhhhccCCCCChh
Q 007214 229 ---------------GLPFVFASGAEFTDSEKSGAARINEMFSIAR---------RNAPAFVFVDEIDAIAGRHARKDPR 284 (612)
Q Consensus 229 ---------------g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~---------~~~P~ILfIDEiD~l~~~~~~~~~~ 284 (612)
..||+.+.++....... |...+...+.... .....||||||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~-G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVV-GSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcC-CcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 24666665543322110 1111111111000 1122599999999984
Q ss_pred HHHHHHHHHHHhcCCc---ccCCcccccccccEEEEEecCCC-CCccccccCCCceeEEEEeCCCC-HHHHHHHHHHHhc
Q 007214 285 RRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRP-DELDLEFVRPGRIDRRLYIGLPD-AKQRVQIFDVHSA 359 (612)
Q Consensus 285 ~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p-~~LD~aLlrpgRFd~~I~v~~Pd-~~eR~~Il~~~l~ 359 (612)
...++.|+..|+... ...+ .....+..+++|+|+|.. ..+.++|+. ||+.+|.++.|. .+++.++++....
T Consensus 140 -~~~q~~Ll~~le~g~~~v~r~g-~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 -DHLVDVLLDAAAMGVNRVEREG-LSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred -HHHHHHHHHHHhcCCEEEEECC-ceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHh
Confidence 236777888876432 1111 112334568999999964 368889999 999999998774 6777777764321
Q ss_pred CC--C-----------------------CCccC-----CHHHHHHhc--CCC-cHHHHHHHHHHHHHHHHHhCCCCccHH
Q 007214 360 GK--Q-----------------------LAEDV-----NFEELVFRT--VGF-SGADIRNLVNESGIMSVRKGHSKIQQQ 406 (612)
Q Consensus 360 ~~--~-----------------------l~~dv-----dl~~La~~t--~G~-sgadL~~lv~~A~~~A~r~~~~~It~~ 406 (612)
.. . +...+ .+..++..+ .|. +.+-...+++-|...|..+++..|+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~ 295 (633)
T TIGR02442 216 FDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAE 295 (633)
T ss_pred hccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHH
Confidence 00 0 00011 112222221 244 355556788888889999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 007214 407 DIVDVLDKQLLEGM 420 (612)
Q Consensus 407 dl~~Al~~~~~~~~ 420 (612)
|+..|+.-++.++.
T Consensus 296 Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 296 DVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999887655
No 144
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.37 E-value=1.3e-11 Score=131.24 Aligned_cols=140 Identities=29% Similarity=0.386 Sum_probs=100.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHH---HHHHh-hcCC------eEEEEccchh
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEM---FSIAR-RNAP------AFVFVDEIDA 273 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~l---F~~A~-~~~P------~ILfIDEiD~ 273 (612)
+.+||.||||||||++|+++|..++.+|+.++|...... ...|...+... ...-+ ...| +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 469999999999999999999999999999999976554 33332222211 10000 0111 4999999986
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCccc-ccccccEEEEEecC-----CCCCccccccCCCceeEEEEeCCCC-
Q 007214 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDR-FSLRQAVIFICATN-----RPDELDLEFVRPGRIDRRLYIGLPD- 346 (612)
Q Consensus 274 l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~-~~~~~~ViVIaaTN-----~p~~LD~aLlrpgRFd~~I~v~~Pd- 346 (612)
.. ..+.+.|+..|+...-.-+... +..+.+++||+|+| ....+++|+++ ||...+.+++|+
T Consensus 124 a~----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 124 AP----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred CC----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 63 3477888888887555544445 66778899999999 44568999999 999999999994
Q ss_pred HHHHHHHHHH
Q 007214 347 AKQRVQIFDV 356 (612)
Q Consensus 347 ~~eR~~Il~~ 356 (612)
..+...++..
T Consensus 192 ~~e~~~i~~~ 201 (329)
T COG0714 192 EEEERIILAR 201 (329)
T ss_pred hHHHHHHHHh
Confidence 4444444443
No 145
>PHA02244 ATPase-like protein
Probab=99.36 E-value=1.7e-11 Score=129.98 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=84.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh---h--hhHHHHH-HHHHHHhhcCCeEEEEccchhhhccC
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE---K--SGAARIN-EMFSIARRNAPAFVFVDEIDAIAGRH 278 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~---~--~~~~~ir-~lF~~A~~~~P~ILfIDEiD~l~~~~ 278 (612)
..|||+||||||||++|+++|..++.||+.+++. .... + .....+. .-|-.|.+ ...+|+|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p-- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIP-- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCCH--
Confidence 4699999999999999999999999999999842 1110 0 0000111 12223322 357999999997732
Q ss_pred CCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC-----------CCccccccCCCceeEEEEeCCCCH
Q 007214 279 ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP-----------DELDLEFVRPGRIDRRLYIGLPDA 347 (612)
Q Consensus 279 ~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p-----------~~LD~aLlrpgRFd~~I~v~~Pd~ 347 (612)
. ++..|...++...-......+....++.+|+|+|.+ ..+++|+++ || ..|+++.|+.
T Consensus 195 -----~---vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 195 -----E---ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred -----H---HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 2 334444444322111111223344678999999973 467999999 99 5799999984
Q ss_pred HHHHHHH
Q 007214 348 KQRVQIF 354 (612)
Q Consensus 348 ~eR~~Il 354 (612)
....|.
T Consensus 264 -~E~~i~ 269 (383)
T PHA02244 264 -IEHLIS 269 (383)
T ss_pred -HHHHHh
Confidence 333444
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.34 E-value=1.6e-11 Score=111.69 Aligned_cols=137 Identities=32% Similarity=0.528 Sum_probs=88.9
Q ss_pred HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhh-HHH---HHH
Q 007214 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG-AAR---INE 253 (612)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~-~~~---ir~ 253 (612)
..+..+..++..+ ..++++++||||||||++++.+++.+ +.+++.+++.+........ ... ...
T Consensus 5 ~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 5 EAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred HHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhH
Confidence 3455555554443 45689999999999999999999998 8999999988876553211 111 122
Q ss_pred HHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC--Ccccccc
Q 007214 254 MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFV 331 (612)
Q Consensus 254 lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLl 331 (612)
.+..+....+.+|+|||++.+.. . ....++..+....... ....++.+|+++|... .+++.+.
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~~~-------~---~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~~~~~~~~~ 140 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSLSR-------G---AQNALLRVLETLNDLR-----IDRENVRVIGATNRPLLGDLDRALY 140 (151)
T ss_pred HHHhhccCCCeEEEEeChhhhhH-------H---HHHHHHHHHHhcCcee-----ccCCCeEEEEecCccccCCcChhHH
Confidence 33344456689999999998721 1 1233333333322110 0123478888988876 6777777
Q ss_pred CCCceeEEEEeC
Q 007214 332 RPGRIDRRLYIG 343 (612)
Q Consensus 332 rpgRFd~~I~v~ 343 (612)
+ ||+.++.++
T Consensus 141 ~--r~~~~i~~~ 150 (151)
T cd00009 141 D--RLDIRIVIP 150 (151)
T ss_pred h--hhccEeecC
Confidence 7 998777765
No 147
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.8e-11 Score=139.63 Aligned_cols=205 Identities=17% Similarity=0.243 Sum_probs=138.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------- 231 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~----------- 231 (612)
.++.+.+|+||+|++.+++.|...+. +. +.+..+|||||+|+|||++|+.+|+.+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~---~~--------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIA---TN--------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH---cC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 35678999999999988777665543 22 467789999999999999999999987532
Q ss_pred --------------eeEEecccccchhhhhHHHHHHHHHHHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHH
Q 007214 232 --------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALI 293 (612)
Q Consensus 232 --------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL 293 (612)
++.+++.+ ..+...++.+.+.+... ...|++|||+|.+. ....+.|+
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~-----~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls----------~~a~naLL 142 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAAS-----NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS----------QAAFNAFL 142 (614)
T ss_pred chHHHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC----------HHHHHHHH
Confidence 12222110 11234577776666432 23599999999883 23578888
Q ss_pred HHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCcc-CCHHHH
Q 007214 294 AQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEEL 372 (612)
Q Consensus 294 ~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~L 372 (612)
..|+.... .+++|++|+.+..|-+.+++ |+ ..++|..++.++-...++..+....+.-+ ..+..|
T Consensus 143 K~LEepp~-----------~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~L 208 (614)
T PRK14971 143 KTLEEPPS-----------YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVI 208 (614)
T ss_pred HHHhCCCC-----------CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88886433 25666677677888889988 77 57999999999988888877665544322 236677
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 373 VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 373 a~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+..+ |.+.+++.+++......+ +.. |+.+++.+.+
T Consensus 209 a~~s-~gdlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 209 AQKA-DGGMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHc-CCCHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 7665 446666666665544333 222 6666655443
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.32 E-value=2.8e-11 Score=143.51 Aligned_cols=175 Identities=20% Similarity=0.269 Sum_probs=114.1
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh
Q 007214 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (612)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~ 246 (612)
-+.|+|++++.+.+...+...+.... ...++...+||+||||||||++|+++|..+ +.+++.++++++.+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 35688888776666665553221100 001234568999999999999999999876 568999999987653211
Q ss_pred -----------hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 247 -----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 247 -----------~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
+......+....+.+..+|||||||+.+. ....+.|+..|+...-..+..+...-.+.+
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~----------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH----------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC----------HHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 11111233444455556899999999773 236677787776543222111112234578
Q ss_pred EEEecCCCCC-------------------------ccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 316 FICATNRPDE-------------------------LDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 316 VIaaTN~p~~-------------------------LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
||+|||.... +.|.|+. |+|..+.+.+++.+...+|+...+.
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 9999997321 3355665 9999999999999999999886653
No 149
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.31 E-value=6.2e-11 Score=129.75 Aligned_cols=200 Identities=16% Similarity=0.191 Sum_probs=122.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEeccc-ccch-hhhh-HHHH--HHHHHHHhhc---CCeEEEEccchh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE-FTDS-EKSG-AARI--NEMFSIARRN---APAFVFVDEIDA 273 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s~-~~~~-~~~~-~~~i--r~lF~~A~~~---~P~ILfIDEiD~ 273 (612)
..+|||+||||||||++|++++...+. +|....+.- .... .|.. .... ...|...... ...+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 357999999999999999999987643 555554432 1111 1110 0111 1223222111 224899999986
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC---CccccccCCCceeEEEEeCCCC-HHH
Q 007214 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIGLPD-AKQ 349 (612)
Q Consensus 274 l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd~~I~v~~Pd-~~e 349 (612)
+. ..+++.||..|....-..+......+..++|+++ |... ...+++.. ||-..+.+++|+ .++
T Consensus 119 as----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~D--RFliri~vp~l~~~~~ 185 (498)
T PRK13531 119 AG----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELPEADSSLEALYD--RMLIRLWLDKVQDKAN 185 (498)
T ss_pred CC----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCcccCCchHHhHh--hEEEEEECCCCCchHH
Confidence 63 3477888888865443333333344444555544 6422 23348888 998899999997 456
Q ss_pred HHHHHHHHhc--CCCC--CccCC-----------------------HHHHHHh---c---CCCcHHHHHHHHHHHHHHHH
Q 007214 350 RVQIFDVHSA--GKQL--AEDVN-----------------------FEELVFR---T---VGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 350 R~~Il~~~l~--~~~l--~~dvd-----------------------l~~La~~---t---~G~sgadL~~lv~~A~~~A~ 396 (612)
-.+|+..... .... ..-+. +..|... + ...|++--.++++-|...|.
T Consensus 186 e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~ 265 (498)
T PRK13531 186 FRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAF 265 (498)
T ss_pred HHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 6778865322 1111 00111 1233321 2 23788888899999999999
Q ss_pred HhCCCCccHHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (612)
..|+..|+.+|+. .+..++.
T Consensus 266 l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 266 FSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HCCCCCCCHHHHH-HhHHHhc
Confidence 9999999999998 6655553
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=3e-11 Score=142.61 Aligned_cols=172 Identities=18% Similarity=0.194 Sum_probs=112.2
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCce-EEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhh-
Q 007214 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRG-VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK- 245 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~g-vLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~- 245 (612)
+.|+|++++.+.+.+.+...+....+ -..|.| +||+||||||||.+|+++|..+ +..++.++++++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 46788887766665555432211111 124555 7999999999999999999988 45789999888754311
Q ss_pred ----------hhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 246 ----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 246 ----------~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
.|...-..+....+++.++||+|||||... ....+.|+..+|...-..+..+...-.+.+
T Consensus 642 ~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~----------~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~i 711 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAH----------PDVLELFYQVFDKGVMEDGEGREIDFKNTV 711 (852)
T ss_pred ccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcC----------HHHHHHHHHHhhcceeecCCCcEEeccccE
Confidence 111111223344456677999999999663 235667777776543222212222234689
Q ss_pred EEEecCCCC-----------------------------CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 316 FICATNRPD-----------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 316 VIaaTN~p~-----------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
+|+|||... .+.|+|+. |++ .|.|.+.+.++..+|+...+.
T Consensus 712 iI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 712 ILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 999998521 14566666 997 889999999999999987664
No 151
>PRK09087 hypothetical protein; Validated
Probab=99.30 E-value=9.3e-11 Score=118.18 Aligned_cols=202 Identities=19% Similarity=0.186 Sum_probs=125.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
-.+..+|++.+..+.-...+. +++++. + .....++|+||+|+|||+|+++++...+.. +++..++...
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~----~l~~~~-----~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~ 81 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVS----LVDHWP-----N-WPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD 81 (226)
T ss_pred CCCCCChhceeecCchHHHHH----HHHhcc-----c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH
Confidence 355678999987554333333 333321 1 123459999999999999999999876554 4443333322
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (612)
. +..... .+|+|||+|.+.. . ...+-.+++.+... ...+||+++..|
T Consensus 82 ~----------~~~~~~---~~l~iDDi~~~~~-----~---~~~lf~l~n~~~~~------------g~~ilits~~~p 128 (226)
T PRK09087 82 A----------ANAAAE---GPVLIEDIDAGGF-----D---ETGLFHLINSVRQA------------GTSLLMTSRLWP 128 (226)
T ss_pred H----------HHhhhc---CeEEEECCCCCCC-----C---HHHHHHHHHHHHhC------------CCeEEEECCCCh
Confidence 1 111111 3788999997621 1 12244444443321 114566665555
Q ss_pred CC---ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 324 DE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 324 ~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
.. ..+.|++ ||. ..+++..|+.+.|.+|++.++....+. ++.-++.|+++..+ +.+.+..+++.....+..
T Consensus 129 ~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~ 205 (226)
T PRK09087 129 SSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE 205 (226)
T ss_pred HHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence 42 3577887 885 689999999999999999888655432 22236777777653 666677777766655555
Q ss_pred hCCCCccHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~ 414 (612)
.+ ..||...+.+++..
T Consensus 206 ~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 206 RK-SRITRALAAEVLNE 221 (226)
T ss_pred hC-CCCCHHHHHHHHHh
Confidence 44 55898888877764
No 152
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.29 E-value=1.2e-10 Score=120.36 Aligned_cols=214 Identities=15% Similarity=0.234 Sum_probs=134.9
Q ss_pred eecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEecccccch
Q 007214 173 VVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS 243 (612)
Q Consensus 173 vvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~~~~~ 243 (612)
-+|.+.+++.|+.+.+.+..|.. .-+.++||+|++|.|||++++.+++.. .+|++.+.+..-.+.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 36788888999998888888843 234579999999999999999998754 357888876543221
Q ss_pred ---hh--------------hhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc
Q 007214 244 ---EK--------------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID 306 (612)
Q Consensus 244 ---~~--------------~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~ 306 (612)
+. .....-..+....+...+.+|+|||++.+... ....+...+|.| ..+.+...
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG---s~~~qr~~Ln~L-K~L~NeL~----- 180 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG---SYRKQREFLNAL-KFLGNELQ----- 180 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc---cHHHHHHHHHHH-HHHhhccC-----
Confidence 00 01112233445556677889999999998632 122233333333 22221111
Q ss_pred cccccccEEEEEecCCCC--CccccccCCCceeEEEEeCCC-CHHHHHHHHHHHhcCCCCCcc--CC----HHHHHHhcC
Q 007214 307 RFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFDVHSAGKQLAED--VN----FEELVFRTV 377 (612)
Q Consensus 307 ~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~~I~v~~P-d~~eR~~Il~~~l~~~~l~~d--vd----l~~La~~t~ 377 (612)
-+++.++|-.-.. .-|+.+.+ ||+ .+.+|.. .-++-..++..+-...++... +. ...|-..|.
T Consensus 181 -----ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 181 -----IPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred -----CCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 1245555432212 34777777 995 4455543 234455677666655554322 22 245666788
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 007214 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (612)
Q Consensus 378 G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~ 410 (612)
|..| ++.++++.|+..|++.|.+.||.+.+..
T Consensus 253 G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 253 GLIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred CchH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 8766 6999999999999999999999887654
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=6.4e-11 Score=140.10 Aligned_cols=175 Identities=18% Similarity=0.238 Sum_probs=113.0
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccC-ceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFV-RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE 244 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p-~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~ 244 (612)
-++.|+|++.+.+.+...+...+...... ..| ..+||+||||||||++|+++|+.+ +.+++.++++++.+..
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~----~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDP----NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCC----CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 36678999887777766665433110000 123 358999999999999999999876 5689999999886532
Q ss_pred hh-----------hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 007214 245 KS-----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (612)
Q Consensus 245 ~~-----------~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (612)
.. +...-..+....+....++|+|||++.+. ....+.|+..++...-..+..+.....+
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~----------~~v~~~Ll~ile~g~l~d~~gr~vd~rn 711 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH----------PDVFNILLQVLDDGRLTDGQGRTVDFRN 711 (857)
T ss_pred hHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC----------HHHHHHHHHHHhhCceecCCceEEeecc
Confidence 11 11111122222333444899999999773 2356777777764321111111112235
Q ss_pred EEEEEecCCCC-------------------------CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 314 VIFICATNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 314 ViVIaaTN~p~-------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
.++|+|||... .+.|+|+. |+|..+.+.+++.+...+|++.++.
T Consensus 712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 68899999731 24467777 9999999999999999999887764
No 154
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.28 E-value=1.6e-10 Score=114.42 Aligned_cols=170 Identities=20% Similarity=0.237 Sum_probs=123.5
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
+...++...+++|.|..|+.|-+-...+-.. .+..+|||+|..|||||+|+||+-.+. |..++.|+-.+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3556799999999999988775544432221 367789999999999999999997765 66788887666
Q ss_pred ccchhhhhHHHHHHHHHHHhh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 240 FTDSEKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 240 ~~~~~~~~~~~ir~lF~~A~~-~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
+.. +-.+++..+. ...-|||+|++- + ++.+.....|-..|+|.... .+.||++.|
T Consensus 124 l~~--------Lp~l~~~Lr~~~~kFIlFcDDLS-F--------e~gd~~yK~LKs~LeG~ve~-------rP~NVl~YA 179 (287)
T COG2607 124 LAT--------LPDLVELLRARPEKFILFCDDLS-F--------EEGDDAYKALKSALEGGVEG-------RPANVLFYA 179 (287)
T ss_pred Hhh--------HHHHHHHHhcCCceEEEEecCCC-C--------CCCchHHHHHHHHhcCCccc-------CCCeEEEEE
Confidence 553 4455555554 335799999973 1 12233456677777875543 357899999
Q ss_pred ecCCCCCccccc--------------------cCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC
Q 007214 319 ATNRPDELDLEF--------------------VRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA 364 (612)
Q Consensus 319 aTN~p~~LD~aL--------------------lrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~ 364 (612)
|+|+...|+.-+ -=+.||...+.|.+++.++-.+|+..++++..++
T Consensus 180 TSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 180 TSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred ecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 999976554211 1125999999999999999999999998876654
No 155
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.26 E-value=5.4e-11 Score=133.51 Aligned_cols=225 Identities=14% Similarity=0.203 Sum_probs=133.2
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhh--cCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-eeEE---ecccccchh-
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYE--RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-FVFA---SGAEFTDSE- 244 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~--~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-~i~v---s~s~~~~~~- 244 (612)
++.|.+.+|..+.-.. +........ ...+...+|||+|+||||||++|+++++..... |+.. ++..+....
T Consensus 204 ~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 4667777665542221 221111111 112334479999999999999999999876543 2221 222221110
Q ss_pred h---hhHHHHH-HHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc---ccCCcccccccccEEEE
Q 007214 245 K---SGAARIN-EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 245 ~---~~~~~ir-~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVI 317 (612)
. .+...++ ..+..| ...+++|||+|.+.. .....|++.|+... ...| .....+..+.||
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~----------~~q~~L~e~me~~~i~i~k~G-~~~~l~~~~~vi 347 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKMDD----------SDRTAIHEAMEQQTISIAKAG-ITTTLNARCSVL 347 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhCCH----------HHHHHHHHHHhcCEEEEEeCC-EEEEecCCcEEE
Confidence 0 0000000 011112 235999999998842 24566777775432 1112 112344568999
Q ss_pred EecCCCC-------------CccccccCCCceeEEEEe-CCCCHHHHHHHHHHHhcCCC---------C-----------
Q 007214 318 CATNRPD-------------ELDLEFVRPGRIDRRLYI-GLPDAKQRVQIFDVHSAGKQ---------L----------- 363 (612)
Q Consensus 318 aaTN~p~-------------~LD~aLlrpgRFd~~I~v-~~Pd~~eR~~Il~~~l~~~~---------l----------- 363 (612)
||+|..+ .|++++++ |||..+.+ +.|+.+...+|.++.+.... .
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 425 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRK 425 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHH
Confidence 9999753 58999999 99986554 88999999998876432100 0
Q ss_pred ---------CccCC---HHHH---H--Hh----------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 364 ---------AEDVN---FEEL---V--FR----------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 364 ---------~~dvd---l~~L---a--~~----------t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
.+.+. .+.+ . .+ ..+.|++.+..+++-|...|..+++..|+.+|+..|++=
T Consensus 426 yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 426 YIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 00111 0001 0 01 135688999999999999999999999999999998764
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.24 E-value=4.7e-11 Score=141.10 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=90.1
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCc-eEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh
Q 007214 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVR-GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~-gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~ 246 (612)
+.|+|++++.+.+...+...+.... ....|. .+||+||||||||++|+++|+.+ +.+++.++++++.+....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5678888877777665543221100 012333 47899999999999999999987 468999999888653211
Q ss_pred -----------hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 247 -----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 247 -----------~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
+......+.+..+.+..+||+|||+|.+. ....+.|+..|+...-..+..+.....+.+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC----------HHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 11122345555556656999999999873 236778888887543222211222235689
Q ss_pred EEEecCCC
Q 007214 316 FICATNRP 323 (612)
Q Consensus 316 VIaaTN~p 323 (612)
+|+|||..
T Consensus 655 ~I~Tsn~g 662 (821)
T CHL00095 655 IIMTSNLG 662 (821)
T ss_pred EEEeCCcc
Confidence 99999964
No 157
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=3.1e-10 Score=121.46 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=122.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------CeeEE-e
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFA-S 236 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-------~~i~v-s 236 (612)
..+..|++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.. |.... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3577899999999888887766542 246678999999999999999999998744 11100 1
Q ss_pred c---c-----------ccc---ch--h-------hhhHHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCCChhHH
Q 007214 237 G---A-----------EFT---DS--E-------KSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRR 286 (612)
Q Consensus 237 ~---s-----------~~~---~~--~-------~~~~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~~~~~~ 286 (612)
| . ++. .. . ..+...+|.+-+... .....|++|||+|.+. .
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------~ 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------R 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------H
Confidence 1 0 110 00 0 011233444433322 3345799999999984 2
Q ss_pred HHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCcc
Q 007214 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED 366 (612)
Q Consensus 287 ~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d 366 (612)
...|.||..++.... +.++|..|+.++.+.|.+++ |+ ..+.+++|+.++-.++++.......+. +
T Consensus 156 ~aanaLLk~LEEpp~-----------~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~ 220 (351)
T PRK09112 156 NAANAILKTLEEPPA-----------RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-G 220 (351)
T ss_pred HHHHHHHHHHhcCCC-----------CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-H
Confidence 356889998876432 24555567778888899988 88 699999999999999998743222211 1
Q ss_pred CCHHHHHHhcCCCcHHHHHHHHH
Q 007214 367 VNFEELVFRTVGFSGADIRNLVN 389 (612)
Q Consensus 367 vdl~~La~~t~G~sgadL~~lv~ 389 (612)
..+..++..+.| +++...++++
T Consensus 221 ~~~~~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 221 EITEALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHh
Confidence 224566666554 5554445544
No 158
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.22 E-value=4e-10 Score=125.79 Aligned_cols=217 Identities=17% Similarity=0.232 Sum_probs=130.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCch--hhh----h-------------------cCCccCceEEEEcCCCChH
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPM--QYY----E-------------------RGVQFVRGVLLSGPPGTGK 217 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~--~~~----~-------------------~g~~~p~gvLL~GPPGTGK 217 (612)
.++.+..|.|+.|.+.+-. .+.-||+.+. .|. + .+-++.+-+||+||||-||
T Consensus 263 dky~Pk~FtdLLsDe~tNR---~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNR---RMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred cccChhHHHHHhcchhHHH---HHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 4677889999998885433 2233333221 111 1 1233446689999999999
Q ss_pred HHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHH-h---hcCCeEEEEccchhhhccCCCCChhHHHHHHHHH
Q 007214 218 TLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIA-R---RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALI 293 (612)
Q Consensus 218 T~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A-~---~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL 293 (612)
||||+.+|+++|..++.+++++-...... ..++..+...- - ..+|..|+|||||-- . ...++.++
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~~v-~~kI~~avq~~s~l~adsrP~CLViDEIDGa-------~---~~~Vdvil 408 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAPMV-KEKIENAVQNHSVLDADSRPVCLVIDEIDGA-------P---RAAVDVIL 408 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHHHH-HHHHHHHHhhccccccCCCcceEEEecccCC-------c---HHHHHHHH
Confidence 99999999999999999999985543221 22232222211 1 256889999999932 1 23444444
Q ss_pred HHhcCCcc----cCCc-c--cccccc---cEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 007214 294 AQLDGDKE----RTGI-D--RFSLRQ---AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL 363 (612)
Q Consensus 294 ~~ld~~~~----~~~~-~--~~~~~~---~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l 363 (612)
..+..... ..+. + +-..+. .-.|||.||... -|||+.---|...|.|.+|......+=|+..+....+
T Consensus 409 slv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m 486 (877)
T KOG1969|consen 409 SLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM 486 (877)
T ss_pred HHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC
Confidence 44431110 0000 0 000000 024677788643 4666532257889999999888777777766665554
Q ss_pred CccC-CHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 364 AEDV-NFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 364 ~~dv-dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
..+. .+..|+..|. .||++++|....+|.+..
T Consensus 487 r~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 487 RADSKALNALCELTQ----NDIRSCINTLQFLASNVD 519 (877)
T ss_pred CCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhcc
Confidence 3322 2555555554 499999999988886543
No 159
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.22 E-value=1e-11 Score=114.95 Aligned_cols=118 Identities=31% Similarity=0.399 Sum_probs=74.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh-hhhHHHH-H-------HHHHHHhhcCCeEEEEccchhhhc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARI-N-------EMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~-~~~~~~i-r-------~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
+|||+||||||||++|+.+|+.++.+++.++++...... ..+.-.. . ..+..+.. .++|++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 589999999999999999999999999999988865431 1110000 0 00001111 46899999999762
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCccc--CCcccccccc------cEEEEEecCCCC----CccccccCCCce
Q 007214 277 RHARKDPRRRATFEALIAQLDGDKER--TGIDRFSLRQ------AVIFICATNRPD----ELDLEFVRPGRI 336 (612)
Q Consensus 277 ~~~~~~~~~~~~l~~LL~~ld~~~~~--~~~~~~~~~~------~ViVIaaTN~p~----~LD~aLlrpgRF 336 (612)
..++..|+..++..... .+........ ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ---------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ---------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 33566666666653322 1111111112 499999999988 89999999 87
No 160
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.21 E-value=5.5e-10 Score=113.13 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=69.5
Q ss_pred EEEEecCC-------------CCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCcc-CCHHHHHHhcCCCc
Q 007214 315 IFICATNR-------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFS 380 (612)
Q Consensus 315 iVIaaTN~-------------p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~s 380 (612)
+||.|||+ |..+++.|+. |+ ..|..-+.+.++-++|++.......+.-+ .-+..++.....-|
T Consensus 327 ivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 327 IVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred eEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 67777776 4567777777 77 56777778889999999987765554422 23566666555556
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 007214 381 GADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 381 gadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
-+-.-+|+.-|.+.|...|+..|..+|++++-+
T Consensus 404 LRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 404 LRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred HHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 666667777788889889999999999887754
No 161
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.20 E-value=2.2e-10 Score=130.50 Aligned_cols=201 Identities=21% Similarity=0.296 Sum_probs=131.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC--CCeeEEecccccchhhhhHHHHHHHHHHHh---------hcCCeEEEEccchh
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAARINEMFSIAR---------RNAPAFVFVDEIDA 273 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g--~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~---------~~~P~ILfIDEiD~ 273 (612)
.+|||.|+||||||++|++++..++ .||+.+...........+ ..+...+.... +....+|||||++.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~-idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGG-IDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccc-hhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 4799999999999999999998765 468888753322221111 11111111000 01125999999998
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCc---ccCCcccccccccEEEEEecCCCC---CccccccCCCceeEEEEeCC-CC
Q 007214 274 IAGRHARKDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIGL-PD 346 (612)
Q Consensus 274 l~~~~~~~~~~~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd~~I~v~~-Pd 346 (612)
+.. .+++.|+..|+... .+.+. ....+.++.||+|+|..+ .++++|+. ||+.++.+.. |+
T Consensus 96 l~~----------~~q~~Ll~al~~g~v~i~r~G~-~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 96 LDD----------GLSNRLLQALDEGVVIVEREGI-SVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred CCH----------HHHHHHHHHHHcCCeEEEECCC-ceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 842 36778888886533 11111 133445689999999865 78899999 9999888865 67
Q ss_pred HHHHHHHHHHHhcCC-------------------------CCCccCCHHHHHHh--cCCCc-HHHHHHHHHHHHHHHHHh
Q 007214 347 AKQRVQIFDVHSAGK-------------------------QLAEDVNFEELVFR--TVGFS-GADIRNLVNESGIMSVRK 398 (612)
Q Consensus 347 ~~eR~~Il~~~l~~~-------------------------~l~~dvdl~~La~~--t~G~s-gadL~~lv~~A~~~A~r~ 398 (612)
.++|.+|++.+.... .+.++ .+..++.. ..|.+ .+--..+++-|...|+.+
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh
Confidence 888999987654211 11111 11222222 23433 444557788888899999
Q ss_pred CCCCccHHHHHHHHHHHHHhcc
Q 007214 399 GHSKIQQQDIVDVLDKQLLEGM 420 (612)
Q Consensus 399 ~~~~It~~dl~~Al~~~~~~~~ 420 (612)
++..|+.+|+..|+.-++.++.
T Consensus 242 gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 242 GRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred CCCCCCHHHHHHHHHHHhhhhc
Confidence 9999999999999999887665
No 162
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.20 E-value=2.3e-10 Score=127.50 Aligned_cols=216 Identities=18% Similarity=0.265 Sum_probs=130.8
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-------------------
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES------------------- 228 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~------------------- 228 (612)
..|+||.|++.+++.+.-.+ .....++|.||||||||++++++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 48999999987765544322 234579999999999999999998632
Q ss_pred ---------CCCeeEEecccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 229 ---------GLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 229 ---------g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
..||...+++..... .+.+...-...+..| ...+|||||++.+. ...+..|+..|+.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~----------~~~~~~L~~~LE~ 321 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK----------RSVLDALREPIED 321 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC----------HHHHHHHHHHHHc
Confidence 123333322221111 111111111223333 23699999999874 2355666666654
Q ss_pred Cc---ccCCcccccccccEEEEEecCCC------C-----------------CccccccCCCceeEEEEeCCCCHHH---
Q 007214 299 DK---ERTGIDRFSLRQAVIFICATNRP------D-----------------ELDLEFVRPGRIDRRLYIGLPDAKQ--- 349 (612)
Q Consensus 299 ~~---~~~~~~~~~~~~~ViVIaaTN~p------~-----------------~LD~aLlrpgRFd~~I~v~~Pd~~e--- 349 (612)
.. ...+. ....+.++.+|+|+|.- + .+...|++ |||.++.++.++..+
T Consensus 322 ~~v~i~r~g~-~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~ 398 (499)
T TIGR00368 322 GSISISRASA-KIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLS 398 (499)
T ss_pred CcEEEEecCc-ceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhc
Confidence 32 11111 12234568999999862 1 47788888 999999999765432
Q ss_pred ----------HHHHHHH------HhcCC---CCCccCC-------------HHH---HHHhcCCCcHHHHHHHHHHHHHH
Q 007214 350 ----------RVQIFDV------HSAGK---QLAEDVN-------------FEE---LVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 350 ----------R~~Il~~------~l~~~---~l~~dvd-------------l~~---La~~t~G~sgadL~~lv~~A~~~ 394 (612)
|..+.+. .+.+. .+...+. ... -+....++|.+....+++-|...
T Consensus 399 ~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTi 478 (499)
T TIGR00368 399 TGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTI 478 (499)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 2333221 11111 1111111 111 12234568999999999999999
Q ss_pred HHHhCCCCccHHHHHHHHH
Q 007214 395 SVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 395 A~r~~~~~It~~dl~~Al~ 413 (612)
|..++.+.|+.+|+.+|+.
T Consensus 479 AdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 479 ADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999974
No 163
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=1.1e-09 Score=112.45 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=115.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC-CeeE--Eeccccc---------chhhh------hH---HHHHHHH-HHHhhcC
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGL-PFVF--ASGAEFT---------DSEKS------GA---ARINEMF-SIARRNA 262 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~-~~i~--vs~s~~~---------~~~~~------~~---~~ir~lF-~~A~~~~ 262 (612)
..++|+||+|+|||++++.+++++.. .+.. +....+. ...+. .. ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2221 1111110 00000 00 1122222 2233566
Q ss_pred CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC---Ccc----ccccCCCc
Q 007214 263 PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD---ELD----LEFVRPGR 335 (612)
Q Consensus 263 P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD----~aLlrpgR 335 (612)
+++|+|||+|.+.. . .+.. +..+....... ...+.|+.+. .++ .+. ..+.+ |
T Consensus 124 ~~vliiDe~~~l~~-------~---~~~~-l~~l~~~~~~~-------~~~~~vvl~g-~~~~~~~l~~~~~~~l~~--r 182 (269)
T TIGR03015 124 RALLVVDEAQNLTP-------E---LLEE-LRMLSNFQTDN-------AKLLQIFLVG-QPEFRETLQSPQLQQLRQ--R 182 (269)
T ss_pred CeEEEEECcccCCH-------H---HHHH-HHHHhCcccCC-------CCeEEEEEcC-CHHHHHHHcCchhHHHHh--h
Confidence 78999999998731 1 1222 22222221111 1113333332 222 221 12444 7
Q ss_pred eeEEEEeCCCCHHHHHHHHHHHhcCCCC-----CccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 007214 336 IDRRLYIGLPDAKQRVQIFDVHSAGKQL-----AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (612)
Q Consensus 336 Fd~~I~v~~Pd~~eR~~Il~~~l~~~~l-----~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~ 410 (612)
+...+++++.+.++..+++...+..... -.+..+..|++.+.|.. +.|..+|+.|...|..++...|+.+++..
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 8788999999999999999877753221 12234778888888864 56999999999999999999999999999
Q ss_pred HHHHH
Q 007214 411 VLDKQ 415 (612)
Q Consensus 411 Al~~~ 415 (612)
++...
T Consensus 262 ~~~~~ 266 (269)
T TIGR03015 262 VIAEI 266 (269)
T ss_pred HHHHh
Confidence 98763
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.20 E-value=9.9e-11 Score=105.28 Aligned_cols=122 Identities=31% Similarity=0.496 Sum_probs=82.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCC---eeEEecccccchh---------------hhhHHHHHHHHHHHhhcCCeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEFTDSE---------------KSGAARINEMFSIARRNAPAF 265 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~---~i~vs~s~~~~~~---------------~~~~~~ir~lF~~A~~~~P~I 265 (612)
+..++|+||||||||++++++|..+..+ ++++++....... .......+.++..++...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998775 8888887654321 234556778888998887899
Q ss_pred EEEccchhhhccCCCCChhHHHHHHH-----HHHHhcCCcccCCcccccccccEEEEEecCC-CCCccccccCCCceeEE
Q 007214 266 VFVDEIDAIAGRHARKDPRRRATFEA-----LIAQLDGDKERTGIDRFSLRQAVIFICATNR-PDELDLEFVRPGRIDRR 339 (612)
Q Consensus 266 LfIDEiD~l~~~~~~~~~~~~~~l~~-----LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~-p~~LD~aLlrpgRFd~~ 339 (612)
|+|||++.+.... ....... ...... ...+..+|+++|. ....+..+.+ |++.+
T Consensus 82 iiiDei~~~~~~~------~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~ 141 (148)
T smart00382 82 LILDEITSLLDAE------QEALLLLLEELRLLLLLK------------SEKNLTVILTTNDEKDLGPALLRR--RFDRR 141 (148)
T ss_pred EEEECCcccCCHH------HHHHHHhhhhhHHHHHHH------------hcCCCEEEEEeCCCccCchhhhhh--ccceE
Confidence 9999999885321 0000000 001111 1123688888886 3344444444 88888
Q ss_pred EEeCCC
Q 007214 340 LYIGLP 345 (612)
Q Consensus 340 I~v~~P 345 (612)
+.+..+
T Consensus 142 ~~~~~~ 147 (148)
T smart00382 142 IVLLLI 147 (148)
T ss_pred EEecCC
Confidence 887665
No 165
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.19 E-value=3.2e-10 Score=110.64 Aligned_cols=144 Identities=20% Similarity=0.262 Sum_probs=97.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------eeEEecccccchhhhhHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------~i~vs~s~~~~~~~~~~~~ir~lF~~ 257 (612)
+.|..+||+||||+|||++|+++++.+... +..+.... ...+...++.+.+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~~~~i~~i~~~ 87 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIKVDQVRELVEF 87 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCCHHHHHHHHHH
Confidence 467889999999999999999999886432 12111110 01223456666665
Q ss_pred Hhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCC
Q 007214 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (612)
Q Consensus 258 A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (612)
+.. ....|++|||+|.+.. ...+.|+..|+.... ..++|.+||.+..+.+++++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~----------~~~~~Ll~~le~~~~-----------~~~~il~~~~~~~l~~~i~s- 145 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE----------AAANALLKTLEEPPP-----------NTLFILITPSPEKLLPTIRS- 145 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH----------HHHHHHHHHhcCCCC-----------CeEEEEEECChHhChHHHHh-
Confidence 543 3457999999999842 246778888876332 24666667778999999998
Q ss_pred CceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCC
Q 007214 334 GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378 (612)
Q Consensus 334 gRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G 378 (612)
|+ ..+.+++|+.++..++++.. .+. +..+..++..+.|
T Consensus 146 -r~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 146 -RC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred -hc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 77 58999999999999998865 122 2235555555443
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.5e-11 Score=134.11 Aligned_cols=170 Identities=22% Similarity=0.327 Sum_probs=118.8
Q ss_pred cceecCcccHHHHHHHHHH----hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC---CCeeEEecccccch
Q 007214 171 KEVVLGGDVWDLLDELMIY----MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDS 243 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~----l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g---~~~i~vs~s~~~~~ 243 (612)
+-|+|++++.+.+...+.- +++| .+|-...||.||+|+|||-||+++|..+. .+++.+++|++++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp-------~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDP-------NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4688999877666555543 3333 12334577889999999999999999986 89999999999865
Q ss_pred hhh-----------hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 244 EKS-----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 244 ~~~-----------~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
... |...-..+-+..+++..|||++|||+.-- ..++|-||..||...-..+..+.-.-.
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH----------pdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH----------PDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC----------HHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 321 11222234444455556999999999663 348899999998766555544444556
Q ss_pred cEEEEEecCCCC----------------------------CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 313 AVIFICATNRPD----------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 313 ~ViVIaaTN~p~----------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
+.++|+|||--. .+.|+++. |+|..|.|.+.+.+...+|+...+.
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 789999998521 12345555 7888888888888888777776553
No 167
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=6.3e-11 Score=129.34 Aligned_cols=216 Identities=21% Similarity=0.250 Sum_probs=133.0
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEeccccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFT 241 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~ 241 (612)
..+.+|++++|....-..+.+.+. ..++.+..|||.|.+||||.++|+++-+. .+-||+.++|..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~ak----------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAK----------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHH----------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 346789999998754333333322 12456778999999999999999999654 47799999999987
Q ss_pred chhhh------------hHHH--HHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 007214 242 DSEKS------------GAAR--INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (612)
Q Consensus 242 ~~~~~------------~~~~--ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~ 307 (612)
+...+ |+.+ -..+|+.|... -||+|||..+. ......||..|+.-.-..-.+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp----------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP----------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC----------HHHHHHHHHHHhhceEEecCCC
Confidence 54221 1222 33455555433 59999998873 2355677777765332222222
Q ss_pred ccccccEEEEEecCCCCCccccccCCCceeE-------EEEeCCCCHHHHHHH----HHHHhc----CCC-----CCccC
Q 007214 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQI----FDVHSA----GKQ-----LAEDV 367 (612)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~~I----l~~~l~----~~~-----l~~dv 367 (612)
-..+.+|.||||||+. |-.++. .|+|-. ++.+..|...+|.+= ...++. ..+ +.++
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~- 451 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD- 451 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH-
Confidence 3345679999999973 333333 366632 677788888887542 222222 111 2222
Q ss_pred CHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 007214 368 NFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (612)
Q Consensus 368 dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~ 409 (612)
-+..|.+...--+-++|+|++.++...+- ....|+.+|+-
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 13444444333377999999999887442 33447776665
No 168
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.18 E-value=2.7e-10 Score=130.04 Aligned_cols=103 Identities=16% Similarity=0.271 Sum_probs=69.3
Q ss_pred cccEEEEEecCCC--CCccccccCCCcee---EEEEeCC--C-CHHHHHHHHHHHh---cCCCCCccCC---HHHHH---
Q 007214 311 RQAVIFICATNRP--DELDLEFVRPGRID---RRLYIGL--P-DAKQRVQIFDVHS---AGKQLAEDVN---FEELV--- 373 (612)
Q Consensus 311 ~~~ViVIaaTN~p--~~LD~aLlrpgRFd---~~I~v~~--P-d~~eR~~Il~~~l---~~~~l~~dvd---l~~La--- 373 (612)
+.++.||+++|.. ..+|+.|++ ||+ ..+.++. | +.+.|.++.+... +.....+.++ +..+.
T Consensus 266 p~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~ 343 (608)
T TIGR00764 266 PCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREA 343 (608)
T ss_pred ccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHH
Confidence 4568999999974 578999999 998 6666643 4 4566655554332 2221112333 23332
Q ss_pred HhcCC------CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 374 FRTVG------FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 374 ~~t~G------~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
.+..| .+.++|.+++++|...|..++...|+.+|+.+|++..
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11112 3579999999999888888888899999999998764
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=6.1e-10 Score=126.71 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=125.0
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeE-Ee---cc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF-AS---GA 238 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~-vs---~s 238 (612)
++..+.+++||+|+++..+.+..++.-... +..+.+.++|+||||||||++++.+|++++..++. .+ +.
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 467889999999998766655554433221 22344569999999999999999999998876543 11 11
Q ss_pred ccc-------------chhhhhHHHHHHHHHHHhh----------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHH-
Q 007214 239 EFT-------------DSEKSGAARINEMFSIARR----------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA- 294 (612)
Q Consensus 239 ~~~-------------~~~~~~~~~ir~lF~~A~~----------~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~- 294 (612)
... ..+......++.++..+.. ....||||||++.+..+ ....+..++.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~lLr~ 221 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHEILRW 221 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHHHHHH
Confidence 100 0011223345555555542 34579999999987632 1123445554
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCC--------------CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcC
Q 007214 295 QLDGDKERTGIDRFSLRQAVIFICATNRPD--------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360 (612)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~ 360 (612)
..... . .. .+|+++|..+. .|.++++..-|. .+|.|.+.+.....+.|+..+..
T Consensus 222 ~~~e~-~---------~~-pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 222 KYVSI-G---------RC-PLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred HhhcC-C---------Cc-eEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHh
Confidence 22111 0 11 23333332221 133567642244 47999999999977777666543
Q ss_pred CC--CCc------cCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh-------CCCCccHHHHHHHH
Q 007214 361 KQ--LAE------DVNFEELVFRTVGFSGADIRNLVNESGIMSVRK-------GHSKIQQQDIVDVL 412 (612)
Q Consensus 361 ~~--l~~------dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~-------~~~~It~~dl~~Al 412 (612)
.. ... +..+..|+.. +.+|++.+++.-...+.+. +...++..++..+.
T Consensus 290 E~~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 290 EAKKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred hhhccccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 21 111 1235566664 4459999888666554432 22345555554443
No 170
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.17 E-value=1e-10 Score=115.13 Aligned_cols=208 Identities=21% Similarity=0.271 Sum_probs=128.8
Q ss_pred cccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-CC----CeeEEe
Q 007214 162 YVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GL----PFVFAS 236 (612)
Q Consensus 162 ~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g~----~~i~vs 236 (612)
.+++.++.+.|++|.++..+.|+.+...-..| ++++.||||||||+-+.++|+++ |- -++..+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 35788999999999999888887776644444 69999999999999999999987 32 245555
Q ss_pred cccccchhhhhHHHHHHHHHHHhhcC----CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 237 GAEFTDSEKSGAARINEMFSIARRNA----PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 237 ~s~~~~~~~~~~~~ir~lF~~A~~~~----P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
.++-..- ...+.--..|.+-+-.- -.|+++||.|++.. ...++|-..|+-..+.
T Consensus 86 ASdeRGI--DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----------gAQQAlRRtMEiyS~t---------- 143 (333)
T KOG0991|consen 86 ASDERGI--DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----------GAQQALRRTMEIYSNT---------- 143 (333)
T ss_pred Ccccccc--HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh----------HHHHHHHHHHHHHccc----------
Confidence 5542221 11112224455544322 25999999999852 1234444455444333
Q ss_pred cEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHH
Q 007214 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (612)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A 391 (612)
..+..+||..+.+=+.+.+ |+ -.+.+...+..+...-+....+..... .+.-++.+.-...| |.++.+|..
T Consensus 144 -tRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 144 -TRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred -chhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHH
Confidence 3567788988877666666 55 234444555554443333333322222 22346666655444 888888864
Q ss_pred HHHHHHhCCCCccHHHHHHHHH
Q 007214 392 GIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~ 413 (612)
.+.-.+...|+.+.+.+.++
T Consensus 216 --Qst~~g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 216 --QSTVNGFGLVNQENVFKVCD 235 (333)
T ss_pred --HHHhccccccchhhhhhccC
Confidence 45556777788887766554
No 171
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=8.5e-10 Score=118.66 Aligned_cols=183 Identities=16% Similarity=0.154 Sum_probs=121.9
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC--------------
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------------- 231 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------------- 231 (612)
.+.+|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|.++|+.+-..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 577899999999988888765542 2467889999999999999999999876221
Q ss_pred --------------------eeEEecccccchh-----hhhHHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCCC
Q 007214 232 --------------------FVFASGAEFTDSE-----KSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKD 282 (612)
Q Consensus 232 --------------------~i~vs~s~~~~~~-----~~~~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~~ 282 (612)
++.+... ..+.. .-....+|++-+.+. ...|.|++|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~-~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERS-WNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecc-cccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0111100 00000 011234565555443 3457899999999883
Q ss_pred hhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCC
Q 007214 283 PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ 362 (612)
Q Consensus 283 ~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~ 362 (612)
....|.|+..++... .+.++|.+|+.++.+.+.+++ |+ ..+.+++|+.++-.+++.......
T Consensus 155 ---~~aanaLLK~LEepp-----------~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~- 216 (365)
T PRK07471 155 ---ANAANALLKVLEEPP-----------ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPDL- 216 (365)
T ss_pred ---HHHHHHHHHHHhcCC-----------CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcccC-
Confidence 346788998887643 235777788889989888887 87 689999999999999998654211
Q ss_pred CCccCCHHHHHHhcCCCcHHHHHHHH
Q 007214 363 LAEDVNFEELVFRTVGFSGADIRNLV 388 (612)
Q Consensus 363 l~~dvdl~~La~~t~G~sgadL~~lv 388 (612)
.+..+..++..+.| ++....+++
T Consensus 217 --~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 217 --PDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred --CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 11112456666555 444333443
No 172
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.16 E-value=4.6e-10 Score=118.23 Aligned_cols=68 Identities=32% Similarity=0.469 Sum_probs=53.2
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC--CCeeEEeccccc
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFT 241 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g--~~~i~vs~s~~~ 241 (612)
....+.++|+.++++..--+++.++... -..+++||.||||||||.||-++|+++| +||+.++++++.
T Consensus 20 ~~~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 20 RYIADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp -SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred eeccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 3446799999999999999999887762 2468999999999999999999999997 899988888843
No 173
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.16 E-value=2.5e-10 Score=128.10 Aligned_cols=216 Identities=20% Similarity=0.252 Sum_probs=124.9
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH-----------cCCCeeEE
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE-----------SGLPFVFA 235 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e-----------~g~~~i~v 235 (612)
+.+|++++|....-+.+.+.+..+. ..+..|||+|++||||+++|+++-.. .+.||+.+
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 3579999999866555555443221 23457999999999999999999765 46799999
Q ss_pred ecccccchhhhh------------HH--HHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc
Q 007214 236 SGAEFTDSEKSG------------AA--RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE 301 (612)
Q Consensus 236 s~s~~~~~~~~~------------~~--~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~ 301 (612)
+|+.+.+..... +. .-..+|+.|. ...||||||+.+.. .....|+..++...-
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~----------~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPL----------PLQTRLLRVLEEKEV 351 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCH----------HHHHHHHhhhhcCeE
Confidence 999886532111 00 0113455543 34799999999842 245566666654321
Q ss_pred cCCcccccccccEEEEEecCCCCCccccccCCCceeE-------EEEeCCCCHHHHHH----HHHHHhcC----C--CCC
Q 007214 302 RTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQ----IFDVHSAG----K--QLA 364 (612)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~~----Il~~~l~~----~--~l~ 364 (612)
..-......+.++.+|++||.. +.. +...|+|.. .+.+..|...+|.+ +++.++.. . .+.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~~-~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LEE-DVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HHH-HHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 1111111233457899999864 222 222344432 56777788777754 33444432 1 122
Q ss_pred ccCC------HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 365 EDVN------FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 365 ~dvd------l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
++.- +..|....---+-++|+|++++++..+.......++.+++
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 1110 1223333333467899999998887543222234555543
No 174
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.14 E-value=3.5e-10 Score=123.00 Aligned_cols=149 Identities=21% Similarity=0.323 Sum_probs=91.3
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-------eeEEe----cc
Q 007214 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVFAS----GA 238 (612)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------~i~vs----~s 238 (612)
++++++.+ ..++.++..+.. .++++|+||||||||++|+++|..+... ++.++ ..
T Consensus 174 l~d~~i~e---~~le~l~~~L~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPE---TTIETILKRLTI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCH---HHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 56666554 334444444432 3689999999999999999999877431 12222 11
Q ss_pred cccchh---hhhHH----HHHHHHHHHhh--cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc--------
Q 007214 239 EFTDSE---KSGAA----RINEMFSIARR--NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE-------- 301 (612)
Q Consensus 239 ~~~~~~---~~~~~----~ir~lF~~A~~--~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~-------- 301 (612)
++.... +.+.. .+..+...|+. ..|++||||||+... ..+.+..++..|+.-..
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan---------i~kiFGel~~lLE~~~rg~~~~v~l 310 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN---------LSKVFGEVMMLMEHDKRGENWSVPL 310 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC---------HHHhhhhhhhhccccccccccceee
Confidence 222111 11111 23445566665 358999999998652 12334445554542110
Q ss_pred ---cCCcccccccccEEEEEecCCCC----CccccccCCCceeEEEEeCC
Q 007214 302 ---RTGIDRFSLRQAVIFICATNRPD----ELDLEFVRPGRIDRRLYIGL 344 (612)
Q Consensus 302 ---~~~~~~~~~~~~ViVIaaTN~p~----~LD~aLlrpgRFd~~I~v~~ 344 (612)
....+.+..+.++.||||+|..+ .+|.||+| || ..|++.+
T Consensus 311 ~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 311 TYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 11123477889999999999987 79999999 99 4566654
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.7e-10 Score=125.93 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=119.0
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEEe
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~vs 236 (612)
.-.++-|+|.+ ++++.++..|... ...+-+|.|+||+|||.++..+|... +..+++++
T Consensus 166 ~gklDPvIGRd---~EI~r~iqIL~RR---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRD---EEIRRTIQILSRR---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChH---HHHHHHHHHHhcc---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 45677888887 3455555554433 23457899999999999999999864 44578888
Q ss_pred cccccch---hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 007214 237 GAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (612)
Q Consensus 237 ~s~~~~~---~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (612)
.+.+... .|..+.+++.+.+..++..+.||||||+|.+.+.....+. ....-|-|--.|.. ..
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLAR-------------Ge 299 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPALAR-------------GE 299 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHHhc-------------CC
Confidence 8887754 3778999999999999888999999999999865432221 22233333333332 12
Q ss_pred EEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHh
Q 007214 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358 (612)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l 358 (612)
+-+|+||...+ .-|+||-| || ..|.+.-|+.++-..||+-.-
T Consensus 300 L~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 300 LRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHH
Confidence 67888886533 35899999 99 689999999999999998544
No 176
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=6.9e-10 Score=117.13 Aligned_cols=169 Identities=9% Similarity=0.178 Sum_probs=114.1
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC--------eeEEecccc
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP--------FVFASGAEF 240 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~--------~i~vs~s~~ 240 (612)
+|++|+|++.+++.+...+. . .+.|..+||+||+|+|||++|+++|+.+-.. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~---~--------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII---K--------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH---c--------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 59999999988777665542 2 2467789999999999999999999976322 2222211
Q ss_pred cchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 241 TDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 241 ~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
+....+...++++.+.+.. ....|++||++|.+. ....|.||..++... .++++
T Consensus 69 -~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~----------~~a~naLLK~LEepp-----------~~t~~ 126 (313)
T PRK05564 69 -NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT----------EQAQNAFLKTIEEPP-----------KGVFI 126 (313)
T ss_pred -cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC----------HHHHHHHHHHhcCCC-----------CCeEE
Confidence 1111223346666654432 234699999999883 235789999888633 23566
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCC
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G 378 (612)
|.+|+.++.+.+.+++ |+ ..+++..|+.++....++..... .. +..+..++..+.|
T Consensus 127 il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 127 ILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred EEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 6666778999999998 87 68999999999988888755432 11 2224455555554
No 177
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=4.9e-10 Score=121.05 Aligned_cols=208 Identities=20% Similarity=0.196 Sum_probs=130.3
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~ 241 (612)
.+...+.++||...+-..+.+.++..- +.+..|||.|.+||||..+||+|-... +.||+.+||+.+.
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 346789999999876655555555433 235689999999999999999996544 6799999999998
Q ss_pred chhhhhH--HHHHHHHHHHhhcC--------CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 242 DSEKSGA--ARINEMFSIARRNA--------PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 242 ~~~~~~~--~~ir~lF~~A~~~~--------P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
++..+++ .-.+..|.-|.... ..-||+|||..+. -.....||..++...-..-...-...
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP----------L~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP----------LALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC----------HHHHHHHHHHHhhcceeecCCCceeE
Confidence 7643321 12334444333222 2469999998773 22445677766543322211222344
Q ss_pred ccEEEEEecCCCCCccccccCCCceeE-------EEEeCCCCHHHHHH---HH-HHHh----cCCCC-CccC---CHHHH
Q 007214 312 QAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQ---IF-DVHS----AGKQL-AEDV---NFEEL 372 (612)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~~---Il-~~~l----~~~~l-~~dv---dl~~L 372 (612)
-+|.||||||+ +|..++.. |+|-. ++.+..|...+|.+ +| ++++ ..... ...+ -++.|
T Consensus 357 VDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L 433 (550)
T COG3604 357 VDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELL 433 (550)
T ss_pred EEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHH
Confidence 56999999997 45445543 67632 55667787777743 11 2222 22222 1111 24555
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHH
Q 007214 373 VFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 373 a~~t~G~sgadL~~lv~~A~~~A 395 (612)
.....--+.++|+|++++|++.|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 54444447799999999999988
No 178
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.10 E-value=2.9e-09 Score=111.97 Aligned_cols=155 Identities=23% Similarity=0.342 Sum_probs=102.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC------------------------CCeeEEecccccchhhhhHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG------------------------LPFVFASGAEFTDSEKSGAARINEMFSIA 258 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g------------------------~~~i~vs~s~~~~~~~~~~~~ir~lF~~A 258 (612)
.|..+||+||||||||++|.++|+++. -.++.++.++-.... .....++.+-+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~~~~vr~~~~~~ 101 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-IIVEQVRELAEFL 101 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-chHHHHHHHHHHh
Confidence 455799999999999999999999886 345666655544321 1233355444443
Q ss_pred hh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCC
Q 007214 259 RR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (612)
Q Consensus 259 ~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpg 334 (612)
.. ...-|++|||+|.+.. ...|.++..+..... +..+|.+||.++.+-+.+++
T Consensus 102 ~~~~~~~~~kviiidead~mt~----------~A~nallk~lEep~~-----------~~~~il~~n~~~~il~tI~S-- 158 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTE----------DAANALLKTLEEPPK-----------NTRFILITNDPSKILPTIRS-- 158 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhH----------HHHHHHHHHhccCCC-----------CeEEEEEcCChhhccchhhh--
Confidence 32 2357999999999952 467889988876443 36888889999999888888
Q ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 335 RIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 335 RFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+ ..+.|.+|+...+....+ +..+..++... .+|+...++.....+.
T Consensus 159 Rc-~~i~f~~~~~~~~i~~~e----------~~~l~~i~~~~----~gd~r~~i~~lq~~~~ 205 (325)
T COG0470 159 RC-QRIRFKPPSRLEAIAWLE----------DQGLEEIAAVA----EGDARKAINPLQALAA 205 (325)
T ss_pred cc-eeeecCCchHHHHHHHhh----------ccchhHHHHHH----HHHHHcCCCHHHHHHH
Confidence 77 677887765555444444 22344444432 3355555554444443
No 179
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.10 E-value=1.9e-10 Score=111.00 Aligned_cols=118 Identities=23% Similarity=0.353 Sum_probs=79.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC----CeeEEecccccchhhhhHHHHHHHHH------HHhhcCCeEEEEccchh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGL----PFVFASGAEFTDSEKSGAARINEMFS------IARRNAPAFVFVDEIDA 273 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~----~~i~vs~s~~~~~~~~~~~~ir~lF~------~A~~~~P~ILfIDEiD~ 273 (612)
-..+||.||+|||||.+|+++|+.+.. +++.++++++.... .....+..+.. .+... .||||||||.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~-~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidK 79 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD-DVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDK 79 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH-HCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc-hHHhhhhhhhhcccceeeccch--hhhhhHHHhh
Confidence 346899999999999999999999996 99999999998821 11111111111 11122 3999999999
Q ss_pred hhccCCCCC-hhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC
Q 007214 274 IAGRHARKD-PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD 324 (612)
Q Consensus 274 l~~~~~~~~-~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~ 324 (612)
...+...+. .....+++.||..+++..-.....+.-...++++|+|+|.-.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 976433222 334567888898888754433222233446799999999754
No 180
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.08 E-value=8.1e-10 Score=124.96 Aligned_cols=216 Identities=20% Similarity=0.207 Sum_probs=123.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
..+..+|++++|....-+.+.+.+..+. .....|||+|++|||||++|+++.... +.||+.++|..+
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 3456789999999865544444443322 234579999999999999999998764 579999999988
Q ss_pred cchhhhhH----H---------HHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 007214 241 TDSEKSGA----A---------RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (612)
Q Consensus 241 ~~~~~~~~----~---------~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~ 307 (612)
.+...... . .....|..| ....|||||||.+.. .....|+..++...-......
T Consensus 259 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 259 SETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP----------AFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred CHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH----------HHHHHHHHHHhcCcEEECCCC
Confidence 54321100 0 000112222 246899999999842 244566666654221110000
Q ss_pred ccccccEEEEEecCCCCCccccccCCCceeE-------EEEeCCCCHHHH----HHHHHHHhcCC----CCCccCC---H
Q 007214 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQR----VQIFDVHSAGK----QLAEDVN---F 369 (612)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR----~~Il~~~l~~~----~l~~dvd---l 369 (612)
...+.++.+|+||+.. +.. +...|+|.. .+.+..|...+| ..+++.++... .....++ +
T Consensus 326 ~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 326 RTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred ceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 1122357899988763 111 112234421 345555655555 23444444311 1111222 4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 370 ~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
..|....---+.++|+++++.|+..+ ....|+.+|+
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l 438 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDF 438 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHC
Confidence 55555554447789999999887654 3346777765
No 181
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.5e-09 Score=117.35 Aligned_cols=155 Identities=22% Similarity=0.333 Sum_probs=109.7
Q ss_pred HHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccc-ccch-hhhhHHHHHHHHHHHhhcCC
Q 007214 186 LMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE-FTDS-EKSGAARINEMFSIARRNAP 263 (612)
Q Consensus 186 lv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~-~~~~-~~~~~~~ir~lF~~A~~~~P 263 (612)
++..++++.++ +-.++||+||||+|||.||-.+|...+.||+.+-.++ .... ....-..++.+|+.|.+..-
T Consensus 526 lv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 34445555432 3467999999999999999999999999999765444 3333 22233458999999999888
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccc-cccCCCceeEEEEe
Q 007214 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDL-EFVRPGRIDRRLYI 342 (612)
Q Consensus 264 ~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~-aLlrpgRFd~~I~v 342 (612)
+||++|+|+.|..-..-+......+++.|+..+...... ....+|++||.+.+.|.. .++. .|+..+++
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppk--------g~kLli~~TTS~~~vL~~m~i~~--~F~~~i~V 669 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPK--------GRKLLIFGTTSRREVLQEMGILD--CFSSTIHV 669 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCC--------CceEEEEecccHHHHHHHcCHHH--hhhheeec
Confidence 999999999986432233344566777788877664322 134889999987665532 3445 89999999
Q ss_pred CCCCH-HHHHHHHHH
Q 007214 343 GLPDA-KQRVQIFDV 356 (612)
Q Consensus 343 ~~Pd~-~eR~~Il~~ 356 (612)
|..+. ++..+++..
T Consensus 670 pnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEE 684 (744)
T ss_pred CccCchHHHHHHHHH
Confidence 88765 666677653
No 182
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.07 E-value=1.2e-09 Score=122.50 Aligned_cols=217 Identities=18% Similarity=0.166 Sum_probs=124.1
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccch
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS 243 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~ 243 (612)
+.+|++++|....-+.+.+.+..+. ..+..|||+|++||||+++|+++-.. .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4779999999865555554443221 23467999999999999999999764 4679999999988653
Q ss_pred hhhh------------HH--HHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 007214 244 EKSG------------AA--RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (612)
Q Consensus 244 ~~~~------------~~--~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~ 309 (612)
.... +. .-..+|+.|. ...||||||+.+.. .....|+..++......-.....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~----------~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPL----------PLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCH----------HHHHHHHHHHhcCcEEecCCCce
Confidence 2110 00 1123445443 35799999999842 24556666665432111000112
Q ss_pred ccccEEEEEecCCCCCccccccCCCceeE-------EEEeCCCCHHHHHH----HHHHHhcCCC--CCccCC---HHH--
Q 007214 310 LRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQ----IFDVHSAGKQ--LAEDVN---FEE-- 371 (612)
Q Consensus 310 ~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~~----Il~~~l~~~~--l~~dvd---l~~-- 371 (612)
.+.++.+|++||..- .. +...|+|.. .+.+..|...+|.+ ++..++.... ....++ +..
T Consensus 345 ~~~dvRiIaat~~~l--~~-~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 345 VPVDVRVVAATHCAL--TT-AVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred eeecceEEeccCCCH--HH-HhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 234578999998642 11 112233321 46677777777753 3334433211 000122 122
Q ss_pred -----HHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 007214 372 -----LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (612)
Q Consensus 372 -----La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~ 409 (612)
|....---+-++|++++++++..+.......|+.+++.
T Consensus 422 ~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 422 GVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 44443334678899999888766532223457776653
No 183
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5e-10 Score=114.79 Aligned_cols=124 Identities=28% Similarity=0.456 Sum_probs=85.8
Q ss_pred eecCcccHHHHHHHHHHhCCchhhhhcC-------Ccc-CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh
Q 007214 173 VVLGGDVWDLLDELMIYMGNPMQYYERG-------VQF-VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (612)
Q Consensus 173 vvG~~e~k~~L~elv~~l~~p~~~~~~g-------~~~-p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~ 244 (612)
|+|++.+|+.|.-.+- ..|.++. ... ..++||.||+|||||+||+.+|+.+++||...++..+.+..
T Consensus 63 VIGQe~AKKvLsVAVY-----NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVY-----NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeeh-----hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 6888989887765442 1122221 112 24699999999999999999999999999999999998874
Q ss_pred hhhH---HHHHHHHHHHh----hcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcc
Q 007214 245 KSGA---ARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKE 301 (612)
Q Consensus 245 ~~~~---~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~----~~~~~~~l~~LL~~ld~~~~ 301 (612)
..|+ ..+..+...|. +....||+|||||.++++..+. +-..+.+.++||..++|...
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTva 205 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVA 205 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCcee
Confidence 3333 22444444332 1224699999999998765332 22345677889999988643
No 184
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=5.3e-10 Score=120.10 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=121.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHH---H-cCCCeeEEecccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK---E-SGLPFVFASGAEF 240 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~---e-~g~~~i~vs~s~~ 240 (612)
-....|++++|.+.. ++++++.++. |. +....||++|++||||+++|+++.. . .+.||+.+||+.+
T Consensus 72 ~~~~~~~~LIG~~~~---~~~~~eqik~---~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 72 LKSEALDDLIGESPS---LQELREQIKA---YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred ccchhhhhhhccCHH---HHHHHHHHHh---hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 345779999998743 3333333322 22 3446799999999999999999953 2 4679999999999
Q ss_pred cchhhhhH-------------HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 007214 241 TDSEKSGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (612)
Q Consensus 241 ~~~~~~~~-------------~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~ 307 (612)
.++..... ..-..+|++|.. .+||+|||+.+.. .....|+..|+...-..-.+.
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~----------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPP----------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCH----------hHHHHHHHHHHcCceEecCCC
Confidence 87632211 112345555533 4899999999843 244567777765433221122
Q ss_pred ccccccEEEEEecCCCCCccccccC-CCcee--EEEEeCCCCHHHHHH----HHHHH----hcCCCCCccCC----HHHH
Q 007214 308 FSLRQAVIFICATNRPDELDLEFVR-PGRID--RRLYIGLPDAKQRVQ----IFDVH----SAGKQLAEDVN----FEEL 372 (612)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlr-pgRFd--~~I~v~~Pd~~eR~~----Il~~~----l~~~~l~~dvd----l~~L 372 (612)
-....+|.+|+|||. .++.+++. ..-+. ..+.+..|+..+|.+ +++++ ++........+ +..|
T Consensus 209 ~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 209 QPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 334567999999974 33333332 01111 244556666666632 23333 33333322222 2233
Q ss_pred HHh-cCCCcHHHHHHHHHHHHHHHH
Q 007214 373 VFR-TVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 373 a~~-t~G~sgadL~~lv~~A~~~A~ 396 (612)
-.. .+| +-++|+|++..++..+.
T Consensus 287 ~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 287 LAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 322 333 67899999999887764
No 185
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.04 E-value=2.4e-11 Score=110.50 Aligned_cols=117 Identities=26% Similarity=0.365 Sum_probs=67.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc-cccchhhhhHHHH---HHHHHHHhhcC---CeEEEEccchhhhccC
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA-EFTDSEKSGAARI---NEMFSIARRNA---PAFVFVDEIDAIAGRH 278 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s-~~~~~~~~~~~~i---r~lF~~A~~~~---P~ILfIDEiD~l~~~~ 278 (612)
+|||.|+||+|||++|+++|+.+|..|..|.+. ++.-....|.... ...|+. ... ..|+++|||....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrapp-- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAPP-- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS-H--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCCH--
Confidence 489999999999999999999999999988875 4432211110000 000000 011 14999999987643
Q ss_pred CCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-----CccccccCCCce
Q 007214 279 ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRI 336 (612)
Q Consensus 279 ~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlrpgRF 336 (612)
.+++.||+.|....-.-....+..+.++.||||-|..+ .|+.|++. ||
T Consensus 77 --------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 --------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp --------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 47889999988765544444567778899999999876 67888887 77
No 186
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.04 E-value=1.5e-10 Score=113.95 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=68.5
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC----------CeeEEec-
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL----------PFVFASG- 237 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~----------~~i~vs~- 237 (612)
+|+||+|++.+|..|.-... ...++||+||||||||++|+++..-+-- .+.++.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999988865443 1358999999999999999999874310 0111111
Q ss_pred ---------ccccchhhhhHHHHHHHHH---------HHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007214 238 ---------AEFTDSEKSGAARINEMFS---------IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 238 ---------s~~~~~~~~~~~~ir~lF~---------~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~ 299 (612)
.-|... ..+. ....++- .+..+ ..|||+||+-.+ ...+++.|..-|+..
T Consensus 67 ~~~~~~~~~~Pfr~p-hhs~-s~~~liGgg~~~~PGeislAh-~GVLflDE~~ef----------~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAP-HHSA-SEAALIGGGRPPRPGEISLAH-RGVLFLDELNEF----------DRSVLDALRQPLEDG 133 (206)
T ss_dssp S---EEEE---EEEE--TT---HHHHHEEGGGEEE-CGGGGT-TSEEEECETTTS-----------HHHHHHHHHHHHHS
T ss_pred CCCCceecCCCcccC-CCCc-CHHHHhCCCcCCCcCHHHHhc-CCEEEechhhhc----------CHHHHHHHHHHHHCC
Confidence 000000 0000 0111111 11222 269999999776 245788888877653
Q ss_pred cccC--CcccccccccEEEEEecCCC-----------------------CCccccccCCCceeEEEEeCCCCHH
Q 007214 300 KERT--GIDRFSLRQAVIFICATNRP-----------------------DELDLEFVRPGRIDRRLYIGLPDAK 348 (612)
Q Consensus 300 ~~~~--~~~~~~~~~~ViVIaaTN~p-----------------------~~LD~aLlrpgRFd~~I~v~~Pd~~ 348 (612)
...- ....+.-+.++++|+|+|.= ..|...|+. |||.++.++..+.+
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred eEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 2211 11123445678999999851 124445555 77777766665543
No 187
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.04 E-value=2.4e-09 Score=120.32 Aligned_cols=202 Identities=19% Similarity=0.224 Sum_probs=119.1
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhh
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~ 245 (612)
++.+++|.....+.+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 68899999865555544444322 235679999999999999999997764 57999999999864311
Q ss_pred hhH-------------HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 246 SGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 246 ~~~-------------~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
... ......|+.|. ...|||||||.+.. .....|+..++...-....+......
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPL----------ALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCH----------HHHHHHHHHHhcCCEeeCCCCcceec
Confidence 100 00112344442 35799999999942 24556666665422111011112334
Q ss_pred cEEEEEecCCCC-------CccccccCCCceeEEEEeCCCCHHHHHH----HHHHHhcC----CCC-CccCC---HHHHH
Q 007214 313 AVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG----KQL-AEDVN---FEELV 373 (612)
Q Consensus 313 ~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~----Il~~~l~~----~~l-~~dvd---l~~La 373 (612)
++.+|++||..- .+.+.|.. |+. .+.+..|...+|.+ ++++++.. ... ...++ +..|.
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 689999998642 12222222 331 45677777777753 22333321 110 11222 45555
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
...---+.++|+++++.|+..+.
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcC
Confidence 55444577999999999887764
No 188
>PRK04132 replication factor C small subunit; Provisional
Probab=99.03 E-value=3.9e-09 Score=123.13 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=120.8
Q ss_pred EEEEc--CCCChHHHHHHHHHHHc-----CCCeeEEecccccchhhhhHHHHHHHHHHHhhcC------CeEEEEccchh
Q 007214 207 VLLSG--PPGTGKTLFARTLAKES-----GLPFVFASGAEFTDSEKSGAARINEMFSIARRNA------PAFVFVDEIDA 273 (612)
Q Consensus 207 vLL~G--PPGTGKT~LAralA~e~-----g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~------P~ILfIDEiD~ 273 (612)
-+..| |++.|||++|+++|+++ +.+++.+++++.... ..++.+...+.... ..|++|||+|.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi-----d~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI-----NVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH-----HHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 35668 99999999999999997 568999999875322 24555554433222 36999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHH
Q 007214 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (612)
Q Consensus 274 l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~I 353 (612)
+.. ...+.|+..|+.... .+.+|++||.++.+.+++++ |+ ..+.|++|+.++-.+.
T Consensus 642 Lt~----------~AQnALLk~lEep~~-----------~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 642 LTQ----------DAQQALRRTMEMFSS-----------NVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred CCH----------HHHHHHHHHhhCCCC-----------CeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHH
Confidence 942 357889988886432 36889999999999999998 87 7899999999999888
Q ss_pred HHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 354 FDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 354 l~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
++..+.+..+. ++..+..++..+.| +.+..-++++.++ .. ...|+.+++...
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~---~~--~~~It~~~V~~~ 750 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA---AL--DDKITDENVFLV 750 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH---Hh--cCCCCHHHHHHH
Confidence 88776644332 23357788877766 3344444444333 21 245777776554
No 189
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.03 E-value=3.2e-09 Score=118.05 Aligned_cols=216 Identities=21% Similarity=0.239 Sum_probs=127.4
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC----------CeeEEec
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL----------PFVFASG 237 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~----------~~i~vs~ 237 (612)
.+|.++.|+..+++.+.- .+.....++|+||||||||++++.+++.+.- .+.++.+
T Consensus 188 ~d~~~v~Gq~~~~~al~l--------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhe--------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 367777776654443211 1223467999999999999999999874421 1111111
Q ss_pred c----------cccch---------hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 238 A----------EFTDS---------EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 238 s----------~~~~~---------~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
. -|... .+.+...-...+..|.. .+|||||++.+. ..++..|++.|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~----------~~~~~~L~~~LE~ 320 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE----------RRTLDALREPIES 320 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC----------HHHHHHHHHHHHc
Confidence 1 01100 01111011133444432 599999998773 2466777777754
Q ss_pred Ccc---cCCcccccccccEEEEEecCCCC---------------------CccccccCCCceeEEEEeCCCCHHH-----
Q 007214 299 DKE---RTGIDRFSLRQAVIFICATNRPD---------------------ELDLEFVRPGRIDRRLYIGLPDAKQ----- 349 (612)
Q Consensus 299 ~~~---~~~~~~~~~~~~ViVIaaTN~p~---------------------~LD~aLlrpgRFd~~I~v~~Pd~~e----- 349 (612)
..- +.+ .....+.++.+|+|+|... .+..++++ |||.++.++.|+.++
T Consensus 321 g~v~I~r~g-~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~ 397 (506)
T PRK09862 321 GQIHLSRTR-AKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTV 397 (506)
T ss_pred CcEEEecCC-cceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhccc
Confidence 331 111 1123356799999999742 36778888 999999999885321
Q ss_pred -----HHHHHHHH--------hcCCCCCccCC-------------HH---HHHHhcCCCcHHHHHHHHHHHHHHHHHhCC
Q 007214 350 -----RVQIFDVH--------SAGKQLAEDVN-------------FE---ELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (612)
Q Consensus 350 -----R~~Il~~~--------l~~~~l~~dvd-------------l~---~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 400 (612)
..+|-+.. .+...+...+. .. +-+....|.|.+....+++-|...|..+++
T Consensus 398 ~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~ 477 (506)
T PRK09862 398 VPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQS 477 (506)
T ss_pred CCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 11121110 00001111111 01 112235688999999999999999999999
Q ss_pred CCccHHHHHHHHH
Q 007214 401 SKIQQQDIVDVLD 413 (612)
Q Consensus 401 ~~It~~dl~~Al~ 413 (612)
+.|+.+|+.+|+.
T Consensus 478 ~~V~~~hv~eAl~ 490 (506)
T PRK09862 478 DIITRQHLQEAVS 490 (506)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999985
No 190
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.02 E-value=2.8e-09 Score=113.38 Aligned_cols=177 Identities=23% Similarity=0.243 Sum_probs=102.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhhH-------------HHHHHHHHHHhhcCCeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA-------------ARINEMFSIARRNAPAFV 266 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~~-------------~~ir~lF~~A~~~~P~IL 266 (612)
....|||+|++||||+++|+++-... +.||+.++|..+.+...... ......|+.| ....|
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEE
Confidence 34679999999999999999996544 57999999998754321100 0011234444 24689
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC-------CCccccccCCCceeEE
Q 007214 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP-------DELDLEFVRPGRIDRR 339 (612)
Q Consensus 267 fIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p-------~~LD~aLlrpgRFd~~ 339 (612)
||||||.+.. .....|+..++...............++.+|++||.. ..+.+.|.. ||. .
T Consensus 98 ~Ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~ 164 (329)
T TIGR02974 98 FLDELATASL----------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-F 164 (329)
T ss_pred EeCChHhCCH----------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-c
Confidence 9999999842 2445666666542211100111233568999999863 123344444 552 4
Q ss_pred EEeCCCCHHHHHH----HHHHHhcC----CCCC--ccCC---HHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 340 LYIGLPDAKQRVQ----IFDVHSAG----KQLA--EDVN---FEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 340 I~v~~Pd~~eR~~----Il~~~l~~----~~l~--~dvd---l~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
+.+..|...+|.+ +++.++.. .... ..++ +..|....---+.++|+++++.|+..+
T Consensus 165 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 165 DVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 5677777777744 33333321 1111 1222 445555543446788888888777654
No 191
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.02 E-value=4.6e-09 Score=118.30 Aligned_cols=213 Identities=20% Similarity=0.232 Sum_probs=118.7
Q ss_pred CcccccceecCcccHH-HHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccccc
Q 007214 166 TKSMYKEVVLGGDVWD-LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~-~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~ 241 (612)
...+|++++|....-+ .++.+.... .....|||+|++||||+++|+++-... +.||+.++|+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4578999999875333 333322221 123459999999999999999985443 4699999999976
Q ss_pred chhhhhH-------------HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 007214 242 DSEKSGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (612)
Q Consensus 242 ~~~~~~~-------------~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~ 308 (612)
+...... .....+|+.|. ...|||||||.+.. .....|+..++...-.......
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSP----------RMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCH----------HHHHHHHHHHhcCCcccCCCCc
Confidence 4311100 00123455443 35799999999842 2345566655442211111111
Q ss_pred cccccEEEEEecCCCC-------CccccccCCCceeEEEEeCCCCHHHHHH-H---HHHHh----cCCCC-CccCC---H
Q 007214 309 SLRQAVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ-I---FDVHS----AGKQL-AEDVN---F 369 (612)
Q Consensus 309 ~~~~~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~-I---l~~~l----~~~~l-~~dvd---l 369 (612)
....++.||+||+.+- .+.+.|.. |+. .+.+..|...+|.+ | ++.++ ..... ...+. +
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 2234578999887642 12333333 443 46677777777753 2 22332 22111 11222 3
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 370 ~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
..|....---+-++|++++..|...+ ....|+.+|+
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 44444433336688888888776554 2345666654
No 192
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.02 E-value=3.5e-09 Score=112.51 Aligned_cols=200 Identities=20% Similarity=0.205 Sum_probs=112.0
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh
Q 007214 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (612)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~ 246 (612)
|++++|....-+.+.+.+..+. +.+..|||+|++||||+++|+++-... +.||+.++|..+.+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 6788888754443333333221 234579999999999999999996544 579999999987543110
Q ss_pred h----H---------HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 007214 247 G----A---------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (612)
Q Consensus 247 ~----~---------~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (612)
. . ......|..| ....|||||+|.+.. .....|+..++.............+.+
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM----------LVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 0 0 0011233333 235799999999842 244556666654221110001122345
Q ss_pred EEEEEecCCC-------CCccccccCCCceeEEEEeCCCCHHHHHH----HHHHHhc----CCCCC--ccCC---HHHHH
Q 007214 314 VIFICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSA----GKQLA--EDVN---FEELV 373 (612)
Q Consensus 314 ViVIaaTN~p-------~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~----Il~~~l~----~~~l~--~dvd---l~~La 373 (612)
+.||+||+.. ..+.+.|.. ||. .+.+..|...+|.+ ++..++. ..... ..++ +..|.
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 8889988763 234444554 552 34566666666643 3334332 11111 1222 34444
Q ss_pred HhcCCCcHHHHHHHHHHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A 395 (612)
...---+-++|+++++.|...+
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHhc
Confidence 4444446688888888776543
No 193
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=7.6e-09 Score=109.24 Aligned_cols=182 Identities=17% Similarity=0.222 Sum_probs=121.6
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------------
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------------- 231 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~----------------- 231 (612)
.|++|+|++++++.|...+..- +.|..+||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5899999999998888776532 456789999999999999999999875221
Q ss_pred -eeEEecccccch----------h--------hhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHH
Q 007214 232 -FVFASGAEFTDS----------E--------KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRAT 288 (612)
Q Consensus 232 -~i~vs~s~~~~~----------~--------~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~ 288 (612)
++.+........ . .-....+|++.+.+.. ....|++||++|.+. ...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------~~a 140 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------EAA 140 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC----------HHH
Confidence 122221100000 0 0112345666555442 335799999999884 236
Q ss_pred HHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC
Q 007214 289 FEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368 (612)
Q Consensus 289 l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd 368 (612)
.|.||..|+... . .++|..|+.++.|-|.+++ |+ ..+.|++|+.++..++++........ +.+
T Consensus 141 aNaLLK~LEEPp-~-----------~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~ 203 (314)
T PRK07399 141 ANALLKTLEEPG-N-----------GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NIN 203 (314)
T ss_pred HHHHHHHHhCCC-C-----------CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhH
Confidence 789999998743 1 3566677889999999998 87 78999999999999999865432111 122
Q ss_pred HHHHHHhcCCCcHHHHHHHHH
Q 007214 369 FEELVFRTVGFSGADIRNLVN 389 (612)
Q Consensus 369 l~~La~~t~G~sgadL~~lv~ 389 (612)
...++....| +++...++++
T Consensus 204 ~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 204 FPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHHHcCC-CHHHHHHHHH
Confidence 4666666555 4444444443
No 194
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.00 E-value=1.9e-09 Score=117.79 Aligned_cols=213 Identities=23% Similarity=0.264 Sum_probs=133.1
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~ 243 (612)
...+.+++|...+-+.+.+.+.-+.. ....||++|++||||.++||+|-... +.||+.+||..+...
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAP----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 45788999998777777777665433 35679999999999999999996544 669999999998754
Q ss_pred hhhh-------------HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 007214 244 EKSG-------------AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (612)
Q Consensus 244 ~~~~-------------~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~ 310 (612)
..+. ..+-...|+.|.. ..||||||..+. ...+..||..++...-..-..+-..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mp----------l~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMP----------LELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCC----------HHHHHHHHHHHHcCeeEecCCCccc
Confidence 2111 1122345555533 479999999884 2356677877765433222222334
Q ss_pred cccEEEEEecCCCCCccccccCCCcee-------EEEEeCCCCHHHHHH----HHHHHhc----CCC-CCccCCHHHHHH
Q 007214 311 RQAVIFICATNRPDELDLEFVRPGRID-------RRLYIGLPDAKQRVQ----IFDVHSA----GKQ-LAEDVNFEELVF 374 (612)
Q Consensus 311 ~~~ViVIaaTN~p~~LD~aLlrpgRFd-------~~I~v~~Pd~~eR~~----Il~~~l~----~~~-l~~dvdl~~La~ 374 (612)
+-+|.||+|||+. |...+. .|+|- -++.+..|...+|.+ +++++++ ... -...++-+.+..
T Consensus 274 ~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 274 KVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 5579999999973 333332 35662 277888888888864 2333332 121 122333333333
Q ss_pred ---hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 375 ---RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 375 ---~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
..---+.++|+|++.++++.+ ....|+.+++
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l 384 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILS---EGPEIEVEDL 384 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhc
Confidence 222225678888888877665 3344555543
No 195
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.99 E-value=5.3e-09 Score=111.09 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=56.8
Q ss_pred cccc-ceecCcccHHHHHHHHHHhCCchhhhhcCC-ccCceEEEEcCCCChHHHHHHHHHHHcCC-------CeeEEec-
Q 007214 168 SMYK-EVVLGGDVWDLLDELMIYMGNPMQYYERGV-QFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFASG- 237 (612)
Q Consensus 168 ~~f~-dvvG~~e~k~~L~elv~~l~~p~~~~~~g~-~~p~gvLL~GPPGTGKT~LAralA~e~g~-------~~i~vs~- 237 (612)
.-|+ +++|++++ +.+++++++... .|. ...+.++|+||||||||++|+++|+.++. |++.+..
T Consensus 47 ~~F~~~~~G~~~~---i~~lv~~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 47 RFFDHDFFGMEEA---IERFVNYFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred cccchhccCcHHH---HHHHHHHHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 4577 89999865 566667766553 222 23577899999999999999999999977 8999887
Q ss_pred ---ccccch-hhhhHHHHHHHH
Q 007214 238 ---AEFTDS-EKSGAARINEMF 255 (612)
Q Consensus 238 ---s~~~~~-~~~~~~~ir~lF 255 (612)
+.+.+. .+......|..|
T Consensus 120 ~~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 120 GEESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCCCccCCcccCCHHHHHHH
Confidence 555444 233333444443
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=7.9e-09 Score=109.72 Aligned_cols=150 Identities=19% Similarity=0.253 Sum_probs=103.4
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------eeEEecccccchhhhhHHHHHHHHH
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFS 256 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------~i~vs~s~~~~~~~~~~~~ir~lF~ 256 (612)
.+.|.++||+||+|+|||++|+++|+.+... ++.+....- ....+...+|++.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~id~iR~l~~ 96 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIKVDQVRELVS 96 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCCHHHHHHHHH
Confidence 3568899999999999999999999876431 122211000 00123345676666
Q ss_pred HHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccC
Q 007214 257 IARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332 (612)
Q Consensus 257 ~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlr 332 (612)
.+.. ....|++||++|.+. ....|.||..|+.-. .++++|.+|+.++.|.|.+++
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~----------~~aaNaLLK~LEEPp-----------~~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN----------RNAANALLKSLEEPS-----------GDTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC----------HHHHHHHHHHHhCCC-----------CCeEEEEEECChhhCcHHHHh
Confidence 5543 335689999999984 347799999998733 347888899999999999999
Q ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCC
Q 007214 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379 (612)
Q Consensus 333 pgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~ 379 (612)
|+ ..+.|++|+.++-.+.+...... ..+.+...+++.+.|-
T Consensus 156 --Rc-~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 156 --RC-QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred --hc-eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 98 56999999999988888755321 1222334555565553
No 197
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.6e-09 Score=109.35 Aligned_cols=89 Identities=26% Similarity=0.403 Sum_probs=66.1
Q ss_pred eEEEEccchhhhccCCCC--ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec----CCCCCccccccCCCcee
Q 007214 264 AFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT----NRPDELDLEFVRPGRID 337 (612)
Q Consensus 264 ~ILfIDEiD~l~~~~~~~--~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT----N~p~~LD~aLlrpgRFd 337 (612)
.|+||||||.++.+...+ +..++.+...||-.++|..-++..... ..+.+++||+. ..|..|=|.|. |||.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~V-kTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPV-KTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccccc-ccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 599999999998765422 445667778888888886554432222 23458888875 45777878886 5999
Q ss_pred EEEEeCCCCHHHHHHHHH
Q 007214 338 RRLYIGLPDAKQRVQIFD 355 (612)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~ 355 (612)
..+++...+.+.-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888875
No 198
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.98 E-value=9.6e-09 Score=118.66 Aligned_cols=215 Identities=17% Similarity=0.203 Sum_probs=121.5
Q ss_pred cccccceecCcccHHH-HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccc
Q 007214 167 KSMYKEVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~-L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~ 242 (612)
..+|++++|.+..-+. ++.+....+ ....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 4578999988754333 333333222 33469999999999999999997754 57999999998864
Q ss_pred hhhhh--------HHH--HHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 243 SEKSG--------AAR--INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 243 ~~~~~--------~~~--ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
..... ... ....|+.| ....||||||+.+.. .....|+..++.............+-
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~----------~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP----------ELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 31100 000 00123332 346899999999842 24456666665432111000011123
Q ss_pred cEEEEEecCCCCCccccccCCCcee-------EEEEeCCCCHHHHHH----HHHHHhcCC------CCC-ccCCHHHHHH
Q 007214 313 AVIFICATNRPDELDLEFVRPGRID-------RRLYIGLPDAKQRVQ----IFDVHSAGK------QLA-EDVNFEELVF 374 (612)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd-------~~I~v~~Pd~~eR~~----Il~~~l~~~------~l~-~dvdl~~La~ 374 (612)
++.+|+|||..- . .+...|+|. ..+.+..|...+|.+ +++.++... ... .+..+..|..
T Consensus 457 ~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 578999998642 1 122224442 156777787777743 233333211 110 1112455555
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
..---+.++|+++++.|...+ ....|+.+|+...
T Consensus 534 y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~ 567 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEH 567 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchh
Confidence 554447789999999877553 2345777665433
No 199
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.97 E-value=7.3e-09 Score=110.62 Aligned_cols=168 Identities=23% Similarity=0.300 Sum_probs=107.7
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-------CCCeeEE----
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFA---- 235 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-------g~~~i~v---- 235 (612)
...|.-++|+|..|..|--- .-+| .-.|+|+.|+.|||||+++||+|.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 45688999999888766322 2233 33589999999999999999999865 2222100
Q ss_pred --ecc-------------------cccch-hhhhHHH------HHHHHH----------HHhhcCCeEEEEccchhhhcc
Q 007214 236 --SGA-------------------EFTDS-EKSGAAR------INEMFS----------IARRNAPAFVFVDEIDAIAGR 277 (612)
Q Consensus 236 --s~s-------------------~~~~~-~~~~~~~------ir~lF~----------~A~~~~P~ILfIDEiD~l~~~ 277 (612)
.|. .+... .+.++.+ +....+ .|+.+. .||++||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC-CEEEEecccccc--
Confidence 000 01111 1112221 112211 233332 699999998773
Q ss_pred CCCCChhHHHHHHHHHHHhcCCcccCC--cccccccccEEEEEecCCCC-CccccccCCCceeEEEEeCCC-CHHHHHHH
Q 007214 278 HARKDPRRRATFEALIAQLDGDKERTG--IDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLP-DAKQRVQI 353 (612)
Q Consensus 278 ~~~~~~~~~~~l~~LL~~ld~~~~~~~--~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~P-d~~eR~~I 353 (612)
...++.||..+....+.-. .-.+..+.++++|+|+|.-+ .|-|.|+. ||...|.+..| +.++|.+|
T Consensus 158 --------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 158 --------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred --------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHH
Confidence 3577888888776322211 12245567799999999753 68888988 99999999776 68999999
Q ss_pred HHHHhc
Q 007214 354 FDVHSA 359 (612)
Q Consensus 354 l~~~l~ 359 (612)
.+..+.
T Consensus 228 i~r~~~ 233 (423)
T COG1239 228 IRRRLA 233 (423)
T ss_pred HHHHHH
Confidence 876543
No 200
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.96 E-value=1e-08 Score=119.29 Aligned_cols=205 Identities=19% Similarity=0.206 Sum_probs=117.9
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~ 243 (612)
+.+|++++|.....+.+.+-+..+. .....|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 4679999999866555554444332 234579999999999999999997644 679999999987532
Q ss_pred h------hh------h-HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 007214 244 E------KS------G-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (612)
Q Consensus 244 ~------~~------~-~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~ 310 (612)
. +. + .......|+.|. ...|||||||.+.. .....|+..++.............
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~~~ 508 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPL----------ELQPKLLRVLQEQEFERLGSNKII 508 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCH----------HHHHHHHHHHHhCCEEeCCCCCcc
Confidence 1 10 0 011123344442 46899999999842 245566666654321110011122
Q ss_pred cccEEEEEecCCCC--CccccccCCC---ceeEEEEeCCCCHHHHHH----HHHHHhcC------CCC--CccCCHHHHH
Q 007214 311 RQAVIFICATNRPD--ELDLEFVRPG---RIDRRLYIGLPDAKQRVQ----IFDVHSAG------KQL--AEDVNFEELV 373 (612)
Q Consensus 311 ~~~ViVIaaTN~p~--~LD~aLlrpg---RFd~~I~v~~Pd~~eR~~----Il~~~l~~------~~l--~~dvdl~~La 373 (612)
+.++.+|++|+..- .+....+++. |+ ..+.+..|...+|.+ +++.++.+ ... -...-+..|.
T Consensus 509 ~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 509 QTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS 587 (686)
T ss_pred cceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 34688999998642 1111111111 22 156677888877754 33333321 111 0111244455
Q ss_pred HhcCCCcHHHHHHHHHHHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A 395 (612)
...---+-++|++++++|+..+
T Consensus 588 ~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 588 NMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred hCCCCCcHHHHHHHHHHHHHhC
Confidence 4444446788888888877653
No 201
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=5.1e-09 Score=111.36 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=104.9
Q ss_pred cccceec-CcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC----------------
Q 007214 169 MYKEVVL-GGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---------------- 231 (612)
Q Consensus 169 ~f~dvvG-~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---------------- 231 (612)
.|+.|+| ++.+.+.|...+. . .+.|..+||+||+|+|||++|+++|+.+-.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~---~--------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA---K--------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 6777777666553 2 2467889999999999999999999875321
Q ss_pred --------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007214 232 --------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 232 --------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~ 299 (612)
+..+... ....+...++++.+.+.. ....|++|||+|.+. ....|.||..|+.-
T Consensus 72 ~~~~~hpD~~~i~~~----~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~----------~~a~NaLLK~LEEP 137 (329)
T PRK08058 72 IDSGNHPDVHLVAPD----GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT----------ASAANSLLKFLEEP 137 (329)
T ss_pred HhcCCCCCEEEeccc----cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC----------HHHHHHHHHHhcCC
Confidence 1111110 001123446666555432 234699999999884 33678999999874
Q ss_pred cccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHH
Q 007214 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (612)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~ 356 (612)
.. ++++|.+|+.+..|.|.+++ |+ ..+++.+|+.++..++++.
T Consensus 138 p~-----------~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 138 SG-----------GTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CC-----------CceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 33 35777788888899999998 87 7899999999988777764
No 202
>PRK08116 hypothetical protein; Validated
Probab=98.95 E-value=3.9e-09 Score=109.09 Aligned_cols=155 Identities=20% Similarity=0.223 Sum_probs=89.8
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~ 243 (612)
..+|++....+.....+..+..+.++.... . ..+.|++|+|+||||||+||.++|+++ +.++++++.+++...
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~---~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKFEEM---K-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHHHHhh---c-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 456776654444444455555555443211 1 234689999999999999999999875 889999998887654
Q ss_pred hhhh-----HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 244 EKSG-----AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 244 ~~~~-----~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
.... ......+++... ...+|+|||++... ..+.. ...|...++..... +..+|.
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~-----~t~~~---~~~l~~iin~r~~~----------~~~~Ii 216 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER-----DTEWA---REKVYNIIDSRYRK----------GLPTIV 216 (268)
T ss_pred HHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-----CCHHH---HHHHHHHHHHHHHC----------CCCEEE
Confidence 2211 011223333332 33599999996431 12222 33344444432111 135778
Q ss_pred ecCCC-CC----ccccccCCCce---eEEEEeCCCCH
Q 007214 319 ATNRP-DE----LDLEFVRPGRI---DRRLYIGLPDA 347 (612)
Q Consensus 319 aTN~p-~~----LD~aLlrpgRF---d~~I~v~~Pd~ 347 (612)
|||.+ .. ++..+.+ |+ ...|.+.-||.
T Consensus 217 TsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 217 TTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 88875 22 4556666 64 34566766764
No 203
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.92 E-value=1.6e-08 Score=117.62 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=82.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC-------CCeeEEecccccchhh--hhHHHH-HHHHHHHhhcCCeEEEEccc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESG-------LPFVFASGAEFTDSEK--SGAARI-NEMFSIARRNAPAFVFVDEI 271 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g-------~~~i~vs~s~~~~~~~--~~~~~i-r~lF~~A~~~~P~ILfIDEi 271 (612)
+...+|||+|+||||||.+|+++++-.. .++..+.+........ .+...+ ...+..| ...+++|||+
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEi 566 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDEL 566 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEc---CCCeEEecch
Confidence 4455799999999999999999987542 3444444433221000 000000 0011111 2358999999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCcc--cCCcccccccccEEEEEecCCCC-------------CccccccCCCce
Q 007214 272 DAIAGRHARKDPRRRATFEALIAQLDGDKE--RTGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRI 336 (612)
Q Consensus 272 D~l~~~~~~~~~~~~~~l~~LL~~ld~~~~--~~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRF 336 (612)
|.+.. .....|++.|+.-.- .........+..+.||||+|... .|+++|++ ||
T Consensus 567 dkms~----------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 567 DKCHN----------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred hhCCH----------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 98842 244567777754321 11111233455689999999742 47899999 99
Q ss_pred eEEEE-eCCCCHHHHHHHH
Q 007214 337 DRRLY-IGLPDAKQRVQIF 354 (612)
Q Consensus 337 d~~I~-v~~Pd~~eR~~Il 354 (612)
|..+- ++.|+.+.-..|-
T Consensus 635 DLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred cEEEEecCCCChHHHHHHH
Confidence 98644 5778776655553
No 204
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.91 E-value=5.8e-09 Score=100.42 Aligned_cols=118 Identities=25% Similarity=0.316 Sum_probs=72.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhh------------H-HHHHHHHHHHhhcCCeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG------------A-ARINEMFSIARRNAPAFV 266 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~------------~-~~ir~lF~~A~~~~P~IL 266 (612)
.+..|||+|++||||+++|+++-... +.||+.++|+.+....... . ..-..+|+.|.. ..|
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL 97 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTL 97 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEE
Confidence 34679999999999999999997754 5799999999886432110 0 112356677644 489
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCce
Q 007214 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336 (612)
Q Consensus 267 fIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRF 336 (612)
|||||+.|.. .....|+..|+...-..-.+.-..+.++.||+|||. .|...+. .|+|
T Consensus 98 ~Ld~I~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~-~g~f 154 (168)
T PF00158_consen 98 FLDEIEDLPP----------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVE-QGRF 154 (168)
T ss_dssp EEETGGGS-H----------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHH-TTSS
T ss_pred eecchhhhHH----------HHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHH-cCCC
Confidence 9999999942 355666666664321111111223456999999985 3443333 3666
No 205
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.85 E-value=2.1e-08 Score=110.62 Aligned_cols=211 Identities=19% Similarity=0.194 Sum_probs=118.5
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhh
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~ 245 (612)
.+.+++|.....+.+...+..+. .....++++|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45677777654444443333221 234569999999999999999997654 56999999998754311
Q ss_pred hhH-------------HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 246 SGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 246 ~~~-------------~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
... ......|..| ....|||||+|.+.. .....|+..++.............+.
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPL----------NLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCH----------HHHHHHHHHHhhCeEEeCCCCceeee
Confidence 100 0001112222 246899999999842 24455666655422111000112234
Q ss_pred cEEEEEecCCCC-------CccccccCCCceeEEEEeCCCCHHHHHH----HHHHHhcC----CCCC-ccC---CHHHHH
Q 007214 313 AVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG----KQLA-EDV---NFEELV 373 (612)
Q Consensus 313 ~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~----Il~~~l~~----~~l~-~dv---dl~~La 373 (612)
++.+|+||+..- .+.+.|.. |+ ..+.+..|...+|.+ +++.++.. .... ..+ -+..|.
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 688999987641 22233322 34 246677777777764 33333321 1110 112 245555
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
...---+.++|+++++.|+..+ ....|+.+++
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 5554457789999999887654 2345666654
No 206
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.83 E-value=1.1e-07 Score=97.11 Aligned_cols=89 Identities=10% Similarity=0.165 Sum_probs=65.2
Q ss_pred CCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCC
Q 007214 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401 (612)
Q Consensus 323 p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~ 401 (612)
|..+|-.|+. |+ ..|...+.+.++..+||+..+......-+.+ +..|......-|-+---+|+..|.+.|.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 5567777776 66 5778888899999999998876554432222 444555555556666678899899999999888
Q ss_pred CccHHHHHHHHHH
Q 007214 402 KIQQQDIVDVLDK 414 (612)
Q Consensus 402 ~It~~dl~~Al~~ 414 (612)
.+..+|+..+..-
T Consensus 416 ~v~~~di~r~y~L 428 (454)
T KOG2680|consen 416 VVEVDDIERVYRL 428 (454)
T ss_pred eeehhHHHHHHHH
Confidence 9999998887654
No 207
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.4e-08 Score=107.98 Aligned_cols=96 Identities=32% Similarity=0.549 Sum_probs=72.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhh---HHHHHHHHHHHh----hcCCeEEEEccchhhhcc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSG---AARINEMFSIAR----RNAPAFVFVDEIDAIAGR 277 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~---~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~ 277 (612)
.+|||.||+|+|||+||+.+|+-+++||..++|..+......| +..+..++..|. +.+..|+||||+|.+..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4699999999999999999999999999999999998763333 445677776653 233479999999999744
Q ss_pred CCC----CChhHHHHHHHHHHHhcCCc
Q 007214 278 HAR----KDPRRRATFEALIAQLDGDK 300 (612)
Q Consensus 278 ~~~----~~~~~~~~l~~LL~~ld~~~ 300 (612)
..+ .+-..+.+.+.||..++|..
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtv 333 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTV 333 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccE
Confidence 322 12233557788888888754
No 208
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.2e-08 Score=108.45 Aligned_cols=218 Identities=18% Similarity=0.288 Sum_probs=125.2
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC---------C-CeeEEe
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---------L-PFVFAS 236 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g---------~-~~i~vs 236 (612)
..+|.||+|++.+|..+..... ..+++|++||||||||++|+.+..-+- + -+.+++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 3489999999999998866442 356899999999999999999865220 0 011111
Q ss_pred ccc-----------ccchhhhhHHHHHHHHH---H------HhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 237 GAE-----------FTDSEKSGAARINEMFS---I------ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 237 ~s~-----------~~~~~~~~~~~ir~lF~---~------A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
+.. |.... .+++ ...+.- . ...+ ..||||||+-.+ ..++++.|.+-|
T Consensus 241 g~~~~~~~~~~~rPFr~PH-HsaS-~~aLvGGG~~p~PGeIsLAH-~GVLFLDElpef----------~~~iLe~LR~PL 307 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPH-HSAS-LAALVGGGGVPRPGEISLAH-NGVLFLDELPEF----------KRSILEALREPL 307 (490)
T ss_pred ccccccCccceeCCccCCC-ccch-HHHHhCCCCCCCCCceeeec-CCEEEeeccchh----------hHHHHHHHhCcc
Confidence 100 00000 0000 000100 0 0111 259999999765 235777777766
Q ss_pred cCCcccC--CcccccccccEEEEEecCCCC-----------------------CccccccCCCceeEEEEeCCCCHHHH-
Q 007214 297 DGDKERT--GIDRFSLRQAVIFICATNRPD-----------------------ELDLEFVRPGRIDRRLYIGLPDAKQR- 350 (612)
Q Consensus 297 d~~~~~~--~~~~~~~~~~ViVIaaTN~p~-----------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR- 350 (612)
+.....- ......-+..+.+|+|+|..- .|...|++ |+|..++++.++..++
T Consensus 308 E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~ 385 (490)
T COG0606 308 ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELI 385 (490)
T ss_pred ccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhh
Confidence 5432211 011123345688999998621 23445666 9999999988764433
Q ss_pred -------------HHHHHHH----hcCCCC--Cc----------------cCCHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 351 -------------VQIFDVH----SAGKQL--AE----------------DVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 351 -------------~~Il~~~----l~~~~l--~~----------------dvdl~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
..+.+.. .+...+ .. +.++.+.+-..-++|.+....+++-|..+|
T Consensus 386 ~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiA 465 (490)
T COG0606 386 RQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIA 465 (490)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 1222211 111111 11 112333344456778888888888888888
Q ss_pred HHhCCCCccHHHHHHHHH
Q 007214 396 VRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 396 ~r~~~~~It~~dl~~Al~ 413 (612)
--++...|...|+.+|+.
T Consensus 466 DL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 466 DLEGSEQIERSHLAEAIS 483 (490)
T ss_pred cccCcchhhHHHHHHHHh
Confidence 777888888888888764
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.81 E-value=3.3e-08 Score=100.69 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=84.7
Q ss_pred CCcccccceecC-cccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 165 DTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 165 ~~~~~f~dvvG~-~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
..+.+|++.... +..+..+..+..+..+.. ....+++|+||||||||+|+.++|.++ |..+++++.+++
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 456789888644 344456666666665431 123589999999999999999999887 788899988887
Q ss_pred cchhhhh----HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 241 TDSEKSG----AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 241 ~~~~~~~----~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
....... ......+++... ...+|+|||++... ..+.....+.+++..-... .-.+
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-----~s~~~~~~l~~Ii~~Ry~~-------------~~~t 198 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-----ESRYEKVIINQIVDRRSSS-------------KRPT 198 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHHhC-------------CCCE
Confidence 7543211 112234444433 45799999998763 2333445666666543211 1246
Q ss_pred EEecCCC
Q 007214 317 ICATNRP 323 (612)
Q Consensus 317 IaaTN~p 323 (612)
|.|||..
T Consensus 199 iitSNl~ 205 (244)
T PRK07952 199 GMLTNSN 205 (244)
T ss_pred EEeCCCC
Confidence 7788864
No 210
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.81 E-value=4.1e-08 Score=112.24 Aligned_cols=102 Identities=16% Similarity=0.262 Sum_probs=66.6
Q ss_pred cccEEEEEecCCC--CCccccccCCCcee---EEEEeCC--C-CHHHHHHHHHHHhcCCC---CCccCC---HHHHHH--
Q 007214 311 RQAVIFICATNRP--DELDLEFVRPGRID---RRLYIGL--P-DAKQRVQIFDVHSAGKQ---LAEDVN---FEELVF-- 374 (612)
Q Consensus 311 ~~~ViVIaaTN~p--~~LD~aLlrpgRFd---~~I~v~~--P-d~~eR~~Il~~~l~~~~---l~~dvd---l~~La~-- 374 (612)
+.++.||+++|+. ..+||.|.. ||. ..+.++. + +.+.+..+++...+... ....++ +..|.+
T Consensus 275 p~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~ 352 (637)
T PRK13765 275 PCDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREA 352 (637)
T ss_pred eeeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHH
Confidence 3468899999884 567899988 885 4555542 2 35556666654332211 112333 222222
Q ss_pred -hcCC------CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 375 -RTVG------FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 375 -~t~G------~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
+..| +..++|.+++++|...|..+++..++.+|+.+|+++
T Consensus 353 ~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 353 KRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2222 346899999999999999999999999999888754
No 211
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.81 E-value=5.3e-08 Score=100.36 Aligned_cols=192 Identities=18% Similarity=0.170 Sum_probs=123.2
Q ss_pred cccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCee------EE
Q 007214 162 YVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV------FA 235 (612)
Q Consensus 162 ~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i------~v 235 (612)
.+++++.+..||++++++...+.++.+.-+. | +.|+|||||||||....+.|+.+-.|.- ..
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~~l-----------P-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMPGL-----------P-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCCCC-----------C-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 3578899999999999887777776433222 2 8999999999999999999998766411 11
Q ss_pred ecccccchhhhh-HHHHHHHHHHHhh-------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 007214 236 SGAEFTDSEKSG-AARINEMFSIARR-------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (612)
Q Consensus 236 s~s~~~~~~~~~-~~~ir~lF~~A~~-------~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~ 307 (612)
+.++- .+.+ .+.--..|..++. ..+..+++||.|++.. ...|+|-.....+..+
T Consensus 100 naSd~---rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----------~AQnALRRviek~t~n----- 161 (360)
T KOG0990|consen 100 NASDD---RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----------DAQNALRRVIEKYTAN----- 161 (360)
T ss_pred hccCc---cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH----------HHHHHHHHHHHHhccc-----
Confidence 11111 1111 1122245555542 2678999999999952 3556666665554432
Q ss_pred ccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC-HHHHHHhcCCCcHHHHHH
Q 007214 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIRN 386 (612)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~~ 386 (612)
+.++.-+|.+..+-|++++ ||. .+.+.+.+.++-...+.+++...++....+ ...+++. +-.|++.
T Consensus 162 ------~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~ 228 (360)
T KOG0990|consen 162 ------TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRV 228 (360)
T ss_pred ------eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHH
Confidence 4455668999999999998 874 456666677777777777776554432222 2233333 4557777
Q ss_pred HHHHHHHHHH
Q 007214 387 LVNESGIMSV 396 (612)
Q Consensus 387 lv~~A~~~A~ 396 (612)
.+|.....+.
T Consensus 229 a~n~Lqs~~~ 238 (360)
T KOG0990|consen 229 ALNYLQSILK 238 (360)
T ss_pred HHHHHHHHHH
Confidence 7776554444
No 212
>PRK12377 putative replication protein; Provisional
Probab=98.78 E-value=4.1e-08 Score=100.21 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=79.7
Q ss_pred CCcccccceecC-cccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 165 DTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 165 ~~~~~f~dvvG~-~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
....+|++.... +..+..+..+..+..+.. ....+++|+||||||||+||.|+|+++ |..+++++..++
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~-------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l 140 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELM-------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV 140 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHH-------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH
Confidence 345678887543 333334554444444331 124689999999999999999999876 778888888887
Q ss_pred cchhhhhH---HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 241 TDSEKSGA---ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 241 ~~~~~~~~---~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
........ .....+++.. ....+|+|||++... .+......+.++++.-... ...+|
T Consensus 141 ~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-----~s~~~~~~l~~ii~~R~~~-------------~~pti 200 (248)
T PRK12377 141 MSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-----ETKNEQVVLNQIIDRRTAS-------------MRSVG 200 (248)
T ss_pred HHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC-----CCHHHHHHHHHHHHHHHhc-------------CCCEE
Confidence 66432111 0122333333 345799999997652 1233344555555543221 12457
Q ss_pred EecCCC
Q 007214 318 CATNRP 323 (612)
Q Consensus 318 aaTN~p 323 (612)
.|||..
T Consensus 201 itSNl~ 206 (248)
T PRK12377 201 MLTNLN 206 (248)
T ss_pred EEcCCC
Confidence 789974
No 213
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.77 E-value=1.5e-07 Score=105.34 Aligned_cols=192 Identities=17% Similarity=0.270 Sum_probs=123.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc----------CCCeeEEecccccchh---hh--------------hHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAEFTDSE---KS--------------GAARINEMFSIA 258 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~----------g~~~i~vs~s~~~~~~---~~--------------~~~~ir~lF~~A 258 (612)
.++++|-||||||.+++.+-.++ ..+++.+++-.+.+.. .. +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68899999999999999997754 3568889988876541 11 112233333322
Q ss_pred -hhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccC---CC
Q 007214 259 -RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR---PG 334 (612)
Q Consensus 259 -~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlr---pg 334 (612)
.+..+|||+|||+|.|..++ +.++..++..-.- ....++||+..|..+. +..++- ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-------QdVlYn~fdWpt~-----------~~sKLvvi~IaNTmdl-PEr~l~nrvsS 564 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-------QDVLYNIFDWPTL-----------KNSKLVVIAIANTMDL-PERLLMNRVSS 564 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-------HHHHHHHhcCCcC-----------CCCceEEEEecccccC-HHHHhccchhh
Confidence 23457999999999998652 2244444433211 2245788888776543 333322 12
Q ss_pred cee-EEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHhCC-------CCcc
Q 007214 335 RID-RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG--ADIRNLVNESGIMSVRKGH-------SKIQ 404 (612)
Q Consensus 335 RFd-~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sg--adL~~lv~~A~~~A~r~~~-------~~It 404 (612)
|++ ..|.|.+.+.++..+|+...+.+...-.+--.+-+|+.-...|| +..-.+|++|...|-.+.. ..|+
T Consensus 565 Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~ 644 (767)
T KOG1514|consen 565 RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVG 644 (767)
T ss_pred hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceee
Confidence 554 47899999999999999988876632222223444555444454 3344678888888876654 4578
Q ss_pred HHHHHHHHHHHH
Q 007214 405 QQDIVDVLDKQL 416 (612)
Q Consensus 405 ~~dl~~Al~~~~ 416 (612)
+.|+.+|+...+
T Consensus 645 ~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 645 ILHVMEAINEML 656 (767)
T ss_pred hHHHHHHHHHHh
Confidence 889999988765
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=7.4e-08 Score=102.63 Aligned_cols=132 Identities=17% Similarity=0.299 Sum_probs=95.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC-------------------------eeEEeccccc---------------
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-------------------------FVFASGAEFT--------------- 241 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------------------------~i~vs~s~~~--------------- 241 (612)
+.|.++||+||+|+||+++|+++|+.+... +..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 688999999999999999999999876432 1112111000
Q ss_pred -ch--------hhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 007214 242 -DS--------EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (612)
Q Consensus 242 -~~--------~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~ 308 (612)
.. ...+...+|.+.+.+.. ....|++||++|.+. ....|.||..|+.-
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEP--------- 159 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------VAAANALLKTLEEP--------- 159 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------HHHHHHHHHHhcCC---------
Confidence 00 01123456766665432 234699999999984 34779999999863
Q ss_pred cccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHH
Q 007214 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357 (612)
Q Consensus 309 ~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~ 357 (612)
+.++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 160 --p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 160 --PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred --CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 3457889999999999999999 98 78999999999999888754
No 215
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.73 E-value=9e-08 Score=106.42 Aligned_cols=212 Identities=17% Similarity=0.153 Sum_probs=120.3
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhh
Q 007214 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (612)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~ 245 (612)
.|.+++|.....+.+...+..+. .....++++|++|||||++|+++.... +.||+.++|..+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 46678887654444333333211 234569999999999999999998765 56999999998754311
Q ss_pred hhH------------HH-HHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 246 SGA------------AR-INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 246 ~~~------------~~-ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
... .. ....|+.| ....|||||+|.+.. .....|+..++...-....+......
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~~~ 272 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPL----------DVQTRLLRVLADGQFYRVGGYAPVKV 272 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCH----------HHHHHHHHHHhcCcEEeCCCCCeEEe
Confidence 000 00 01112222 235799999999842 23456666665432111111112234
Q ss_pred cEEEEEecCCCC-------CccccccCCCceeEEEEeCCCCHHHHHH----HHHHHhcC----C--CC--CccCCHHHHH
Q 007214 313 AVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG----K--QL--AEDVNFEELV 373 (612)
Q Consensus 313 ~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~----Il~~~l~~----~--~l--~~dvdl~~La 373 (612)
++.+|+||+..- .+.+.|.. ||. .+.+..|...+|.+ ++..++.. . .. -.+..+..|.
T Consensus 273 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 349 (469)
T PRK10923 273 DVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 (469)
T ss_pred eEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 578999987631 23344444 552 35666666655543 44444321 1 11 1112245556
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 007214 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (612)
Q Consensus 374 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~ 409 (612)
...---+.++|+++++.|...+ ....|+.+|+.
T Consensus 350 ~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~ 382 (469)
T PRK10923 350 RLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLP 382 (469)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 5555557799999999887654 23467777764
No 216
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.73 E-value=2e-07 Score=105.78 Aligned_cols=200 Identities=12% Similarity=0.084 Sum_probs=133.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC--CCeeEEecccccch-hhhhHHHHHHHHHH----------HhhcCCeEEEEccc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDS-EKSGAARINEMFSI----------ARRNAPAFVFVDEI 271 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g--~~~i~vs~s~~~~~-~~~~~~~ir~lF~~----------A~~~~P~ILfIDEi 271 (612)
.||+|.|++|||||+++++++.-+. .||+.+..+--... .|.+ .+...+.. +..+ ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah-~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEAD-GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeecc-CCEEEecCc
Confidence 5899999999999999999998764 48876654443333 1211 11111111 1111 269999999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCcccC--CcccccccccEEEEEecCCC---CCccccccCCCceeEEEEeCCCC
Q 007214 272 DAIAGRHARKDPRRRATFEALIAQLDGDKERT--GIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDRRLYIGLPD 346 (612)
Q Consensus 272 D~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd~~I~v~~Pd 346 (612)
..+- ..+++.|++-|+.....- ....+..+.++++|++-|.. ..|+++++. ||+.++.++.|+
T Consensus 103 n~~~----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~ 170 (584)
T PRK13406 103 ERLE----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLA 170 (584)
T ss_pred ccCC----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCC
Confidence 8773 348889999988643321 12234556778999975432 358899999 999999999887
Q ss_pred HHHHH-------HHHHH--HhcCCCCCccCCHHHHHHh--cCCC-cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 347 AKQRV-------QIFDV--HSAGKQLAEDVNFEELVFR--TVGF-SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 347 ~~eR~-------~Il~~--~l~~~~l~~dvdl~~La~~--t~G~-sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
..+.. +|... .+.+..+... .+..++.. ..|. |.+--..+++-|..+|..+++..|+.+|+.+|+.-
T Consensus 171 ~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 171 LRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred hHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 65422 33332 2233332221 23333222 3465 77777789999999999999999999999999999
Q ss_pred HHHhcc
Q 007214 415 QLLEGM 420 (612)
Q Consensus 415 ~~~~~~ 420 (612)
++.++.
T Consensus 250 vL~hR~ 255 (584)
T PRK13406 250 VLAPRA 255 (584)
T ss_pred HHHhhc
Confidence 887664
No 217
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.72 E-value=1.1e-07 Score=105.28 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=107.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhhH-------------HHHHHHHHHHhhcCCeEEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA-------------ARINEMFSIARRNAPAFVF 267 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~~-------------~~ir~lF~~A~~~~P~ILf 267 (612)
...+|++|++||||+++|+++.... +.||+.++|..+........ ......|..| ...+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEE
Confidence 3579999999999999999997654 57999999998754321000 0001122222 235899
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeE-------EE
Q 007214 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RL 340 (612)
Q Consensus 268 IDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I 340 (612)
|||+|.+.. .....|+..++.............+.++.+|+|||..- . .+.+.|+|.. .+
T Consensus 243 ld~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l~~~l~~~ 309 (457)
T PRK11361 243 LDEIGEMPL----------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL--Q-AMVKEGTFREDLFYRLNVI 309 (457)
T ss_pred EechhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccc
Confidence 999999842 24556666665432111001112234588999998632 1 2222344432 56
Q ss_pred EeCCCCHHHHHH----HHHHHhcCC----CCC-ccCC---HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 341 YIGLPDAKQRVQ----IFDVHSAGK----QLA-EDVN---FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 341 ~v~~Pd~~eR~~----Il~~~l~~~----~l~-~dvd---l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
.+..|...+|.+ ++..++... ... ..++ +..|....---+.++|++++++|...+ ....|+.+|+
T Consensus 310 ~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l 386 (457)
T PRK11361 310 HLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDL 386 (457)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHC
Confidence 777888877754 223332211 100 1122 445555544447789999998877543 3345777665
Q ss_pred H
Q 007214 409 V 409 (612)
Q Consensus 409 ~ 409 (612)
.
T Consensus 387 ~ 387 (457)
T PRK11361 387 P 387 (457)
T ss_pred h
Confidence 4
No 218
>PRK08181 transposase; Validated
Probab=98.72 E-value=5.6e-08 Score=100.36 Aligned_cols=86 Identities=17% Similarity=0.332 Sum_probs=58.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhhH--HHHHHHHHHHhhcCCeEEEEccchhhhccC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRH 278 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~~--~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~ 278 (612)
..+++|+||||||||+||.++|.++ |..+++++..++........ ......+.... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 3689999999999999999998654 88889998888776532211 12334444433 457999999987632
Q ss_pred CCCChhHHHHHHHHHHHh
Q 007214 279 ARKDPRRRATFEALIAQL 296 (612)
Q Consensus 279 ~~~~~~~~~~l~~LL~~l 296 (612)
++.....+.++++..
T Consensus 182 ---~~~~~~~Lf~lin~R 196 (269)
T PRK08181 182 ---DQAETSVLFELISAR 196 (269)
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 233334555555543
No 219
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.72 E-value=5.6e-08 Score=102.30 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=66.3
Q ss_pred cccccceecCc-ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccc
Q 007214 167 KSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (612)
Q Consensus 167 ~~~f~dvvG~~-e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~ 242 (612)
..+|+++...+ +.+..+....+|+.+.. . .+..+|++|+||||||||+|+.|+|+++ |.++.+++.++|..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~---~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP---P--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh---c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 46777776544 33344444555654321 1 1246899999999999999999999887 88888888888765
Q ss_pred hhhhh--HHHHHHHHHHHhhcCCeEEEEccchhh
Q 007214 243 SEKSG--AARINEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 243 ~~~~~--~~~ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
..... ...+...++..+ ...+|+|||+.+-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 53211 112334444443 3469999999754
No 220
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.71 E-value=6.2e-08 Score=92.68 Aligned_cols=134 Identities=19% Similarity=0.300 Sum_probs=85.6
Q ss_pred cCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-----------------------C
Q 007214 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-----------------------P 231 (612)
Q Consensus 175 G~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-----------------------~ 231 (612)
|++++.+.|...+. + .+.|..+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~---~--------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK---S--------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH---C--------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH---c--------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 45555555555443 2 256788999999999999999999986622 1
Q ss_pred eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 007214 232 FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (612)
Q Consensus 232 ~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~ 307 (612)
++.++...-.. ......++.+...+.. ...-|++|||+|.+. ....|.||..|+...
T Consensus 70 ~~~~~~~~~~~--~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~----------~~a~NaLLK~LEepp------- 130 (162)
T PF13177_consen 70 FIIIKPDKKKK--SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT----------EEAQNALLKTLEEPP------- 130 (162)
T ss_dssp EEEEETTTSSS--SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHSTT-------
T ss_pred eEEEecccccc--hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh----------HHHHHHHHHHhcCCC-------
Confidence 22332222110 1233456666665543 235799999999984 357899999998754
Q ss_pred ccccccEEEEEecCCCCCccccccCCCceeEEEEeCCC
Q 007214 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLP 345 (612)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~P 345 (612)
.++++|.+|+.++.|-|.+++ |+ ..+.+++.
T Consensus 131 ----~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 131 ----ENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp ----TTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred ----CCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 347888889999999999998 87 56666553
No 221
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=4.1e-07 Score=96.10 Aligned_cols=151 Identities=23% Similarity=0.304 Sum_probs=100.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC---------------------eeEEe--cccccch--hhhhHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP---------------------FVFAS--GAEFTDS--EKSGAARINEMFS 256 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~---------------------~i~vs--~s~~~~~--~~~~~~~ir~lF~ 256 (612)
+.|.++||+||+|+||+++|.++|+.+-.. +..+. ...-... ...+...+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 578899999999999999999999865321 11111 0000000 0122445677666
Q ss_pred HHhhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccC
Q 007214 257 IARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332 (612)
Q Consensus 257 ~A~~~----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlr 332 (612)
.+... .-.|++||++|.+. ....|.||+.|+.-. .++++|.+|+.++.|.|.+++
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp-----------~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN----------RAACNALLKTLEEPS-----------PGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC----------HHHHHHHHHHhhCCC-----------CCCeEEEEECChhhCchHHHh
Confidence 55432 23699999999994 347799999998743 346788888889999999998
Q ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcH
Q 007214 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG 381 (612)
Q Consensus 333 pgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sg 381 (612)
|+ ..+.|+.|+.++-.+.+... ... ..+...++..+.|-.+
T Consensus 163 --RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 163 --RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred --hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 88 68899999998888777642 221 1123355555555443
No 222
>PRK06526 transposase; Provisional
Probab=98.67 E-value=3.8e-08 Score=100.90 Aligned_cols=85 Identities=28% Similarity=0.443 Sum_probs=55.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhh--HHHHHHHHHHHhhcCCeEEEEccchhhhccC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG--AARINEMFSIARRNAPAFVFVDEIDAIAGRH 278 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~--~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~ 278 (612)
+.+++|+||||||||+||.+++.++ |..+.+++..++....... ...+...+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 4689999999999999999998764 7777777777766543211 11222233322 3467999999987632
Q ss_pred CCCChhHHHHHHHHHHH
Q 007214 279 ARKDPRRRATFEALIAQ 295 (612)
Q Consensus 279 ~~~~~~~~~~l~~LL~~ 295 (612)
+......+.+++..
T Consensus 174 ---~~~~~~~L~~li~~ 187 (254)
T PRK06526 174 ---EPEAANLFFQLVSS 187 (254)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 23333445555554
No 223
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.67 E-value=3.2e-07 Score=102.79 Aligned_cols=204 Identities=18% Similarity=0.258 Sum_probs=113.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe-ccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS-GAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs-~s~~~ 241 (612)
++..+.+.+||+... +.+.++..|++.. + .+....+-+||+||||||||++++.+|+++|..+..-. ...+.
T Consensus 11 ~ky~P~~~~eLavhk---kKv~eV~~wl~~~--~--~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHK---KKVEEVRSWLEEM--F--SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccH---HHHHHHHHHHHHH--h--ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 467788899998764 5566666666532 1 12334557889999999999999999999998766432 22211
Q ss_pred ----------chhhh------hHHHHHHH-HHHHhh-----------cCCeEEEEccchhhhccCCCCChhHHHHHHHHH
Q 007214 242 ----------DSEKS------GAARINEM-FSIARR-----------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALI 293 (612)
Q Consensus 242 ----------~~~~~------~~~~ir~l-F~~A~~-----------~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL 293 (612)
..... ....+..+ +..++. ..+.||+|+|+-.+... .. ..+..+|
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~-~~f~~~L 156 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DT-SRFREAL 156 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hH-HHHHHHH
Confidence 00000 01112222 122221 24679999999876532 11 2333333
Q ss_pred HH-hcCCcccCCcccccccc-cEEEEEe-c------CCC--------CCccccccCCCceeEEEEeCCCCHHHHHHHHHH
Q 007214 294 AQ-LDGDKERTGIDRFSLRQ-AVIFICA-T------NRP--------DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (612)
Q Consensus 294 ~~-ld~~~~~~~~~~~~~~~-~ViVIaa-T------N~p--------~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~ 356 (612)
.. +.. . .. ++++|.+ + |.. ..+++.++...++ .+|.|.+-...-..+.|+.
T Consensus 157 ~~~l~~-~----------~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 157 RQYLRS-S----------RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHc-C----------CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHH
Confidence 32 222 1 11 4677666 1 111 1345555542233 5788887766555555544
Q ss_pred HhcCC-------CCCc-cCC-HHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 357 HSAGK-------QLAE-DVN-FEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 357 ~l~~~-------~l~~-dvd-l~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
.+... ...+ ..+ ++.|+..+. +||+.+++.-...|.
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 43321 1111 122 667776654 499999998887776
No 224
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=6.8e-07 Score=94.67 Aligned_cols=129 Identities=17% Similarity=0.262 Sum_probs=94.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------eeEEecccccchhhhhHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------~i~vs~s~~~~~~~~~~~~ir~lF~~ 257 (612)
+.|.++||+||+|+||+++|+++|+.+-.. ++.+... +....+...+|++-+.
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~I~id~iR~l~~~ 98 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNKDIGVDQVREINEK 98 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCCCCCHHHHHHHHHH
Confidence 567899999999999999999999866321 1112110 0111234557766555
Q ss_pred Hhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCC
Q 007214 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (612)
Q Consensus 258 A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (612)
+.. ....|++||++|.+. ....|.||..|+.- +.++++|.+|+.++.|.|.+++
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~----------~~AaNaLLKtLEEP-----------p~~~~fiL~t~~~~~llpTI~S- 156 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT----------EAAANALLKTLEEP-----------RPNTYFLLQADLSAALLPTIYS- 156 (325)
T ss_pred HhhccccCCceEEEEechhhhC----------HHHHHHHHHHhcCC-----------CCCeEEEEEECChHhCchHHHh-
Confidence 432 334699999999994 34779999999873 3457888889999999999998
Q ss_pred CceeEEEEeCCCCHHHHHHHHHHH
Q 007214 334 GRIDRRLYIGLPDAKQRVQIFDVH 357 (612)
Q Consensus 334 gRFd~~I~v~~Pd~~eR~~Il~~~ 357 (612)
|+ ..+.+++|+.++-.+.|...
T Consensus 157 -RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 157 -RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -hc-eEEeCCCCCHHHHHHHHHHH
Confidence 88 68899999999888888754
No 225
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=6.9e-07 Score=95.22 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=100.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------eeEEecccccchhhhhHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------~i~vs~s~~~~~~~~~~~~ir~lF~~ 257 (612)
+.|.++||+||+|+||+++|.++|+.+-.. +..+.... ....-+...+|++-+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK--GKSSLGVDAVREVTEK 99 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc--ccccCCHHHHHHHHHH
Confidence 578899999999999999999999865221 11121100 0001233456666555
Q ss_pred Hhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCC
Q 007214 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (612)
Q Consensus 258 A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (612)
+.. ....|++||++|.+. .+..|.||+.|+.- +.++++|..|+.++.|.|.+++
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEP-----------p~~t~fiL~t~~~~~lLpTIrS- 157 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT----------DAAANALLKTLEEP-----------PENTWFFLACREPARLLATLRS- 157 (334)
T ss_pred HhhccccCCceEEEEcchHhhC----------HHHHHHHHHHhcCC-----------CCCeEEEEEECChhhChHHHHh-
Confidence 432 344699999999994 34789999999873 3447888889999999999998
Q ss_pred CceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCC
Q 007214 334 GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379 (612)
Q Consensus 334 gRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~ 379 (612)
|+. .+.+++|+.++..+.+.... ..+ ......+++.+.|-
T Consensus 158 -RCq-~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~ 197 (334)
T PRK07993 158 -RCR-LHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGA 197 (334)
T ss_pred -ccc-cccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCC
Confidence 885 68999999988887775421 222 11234555555553
No 226
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.6e-07 Score=109.42 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=98.7
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch-----
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS----- 243 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~----- 243 (612)
.|+||+++...+.+.+.-.+... .+. +++-.+||.||.|+|||-||+++|..+ .-.++.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl--~~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL--KDP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc--CCC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 56788777666666655433210 000 356678999999999999999999876 347999999986552
Q ss_pred ---hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 244 ---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 244 ---~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
...|......+.+..+++..|||+|||||.-- ...++.|+..+|...-..+..+.-.-.++|||.|+
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH----------PDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhcC----------HHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 11234446677777777777999999999652 34778888888877666655555556789999999
Q ss_pred CCC
Q 007214 321 NRP 323 (612)
Q Consensus 321 N~p 323 (612)
|.-
T Consensus 709 n~~ 711 (898)
T KOG1051|consen 709 NVG 711 (898)
T ss_pred ccc
Confidence 874
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.60 E-value=1.6e-07 Score=99.68 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=49.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhh----HHHHHHHHHHHhhcCCeEEEEccchhh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG----AARINEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~----~~~ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
..+++|+||||||||+||.|+|+++ |..+++++..++....... .......++... ...+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3789999999999999999999986 7888999988876543211 011122233333 3469999999765
No 228
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.59 E-value=3.5e-07 Score=101.42 Aligned_cols=190 Identities=21% Similarity=0.239 Sum_probs=104.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhhH-------------HHHHHHHHHHhhcCCeEEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA-------------ARINEMFSIARRNAPAFVF 267 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~~-------------~~ir~lF~~A~~~~P~ILf 267 (612)
...+++.|.+||||+++|+++.... +.||+.++|..+.+...... ......|.. .....||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 233 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQ---ADGGTLF 233 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEE---CCCCeEE
Confidence 4579999999999999999997654 57999999998754321100 000011121 2356899
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-------CccccccCCCceeEEE
Q 007214 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-------ELDLEFVRPGRIDRRL 340 (612)
Q Consensus 268 IDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I 340 (612)
|||+|.+.. .....|+..++...............++.+|+||+..- .+.+.|.. |+. .+
T Consensus 234 l~ei~~l~~----------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~ 300 (463)
T TIGR01818 234 LDEIGDMPL----------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VI 300 (463)
T ss_pred EEchhhCCH----------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cc
Confidence 999999842 23455565554322111000112233578888887532 22223333 332 34
Q ss_pred EeCCCCHHHH----HHHHHHHhcCC----CC-CccCC---HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 341 YIGLPDAKQR----VQIFDVHSAGK----QL-AEDVN---FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 341 ~v~~Pd~~eR----~~Il~~~l~~~----~l-~~dvd---l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
.+..|...+| ..+++.++... .. ...++ +..|....---+-++|+++++.|+..+ ....|+.+|+
T Consensus 301 ~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l 377 (463)
T TIGR01818 301 RIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDL 377 (463)
T ss_pred eecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhc
Confidence 5555555444 33444443211 10 01122 445554443335689999999887665 2346777776
Q ss_pred HHHH
Q 007214 409 VDVL 412 (612)
Q Consensus 409 ~~Al 412 (612)
...+
T Consensus 378 ~~~~ 381 (463)
T TIGR01818 378 PAEL 381 (463)
T ss_pred hHHH
Confidence 5443
No 229
>PRK15115 response regulator GlrR; Provisional
Probab=98.58 E-value=8.1e-07 Score=98.07 Aligned_cols=189 Identities=18% Similarity=0.247 Sum_probs=110.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhhH-------------HHHHHHHHHHhhcCCeEEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA-------------ARINEMFSIARRNAPAFVF 267 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~~-------------~~ir~lF~~A~~~~P~ILf 267 (612)
...++++|++|||||++|+++.... +.||+.++|..+.+...... .....+|..+ ....||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEE
Confidence 3469999999999999999997654 57999999998754321100 0000122222 235899
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCcee-------EEE
Q 007214 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID-------RRL 340 (612)
Q Consensus 268 IDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd-------~~I 340 (612)
|||+|.+.. .....|+..++...............++.+|+||+.. ++..+.+ |+|. ..+
T Consensus 234 l~~i~~l~~----------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l~~~ 300 (444)
T PRK15115 234 LDEIGDMPA----------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRLNVV 300 (444)
T ss_pred EEccccCCH----------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhhcee
Confidence 999999842 2345566666543211111111223468999999863 4433333 4552 156
Q ss_pred EeCCCCHHHHHH----HHHHHhcC----C--CC--CccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 341 YIGLPDAKQRVQ----IFDVHSAG----K--QL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 341 ~v~~Pd~~eR~~----Il~~~l~~----~--~l--~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
.+..|...+|.+ +++.++.. . .. -.+.-+..|....-.-+.++|+++++.|+..+ ....|+.+++
T Consensus 301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l 377 (444)
T PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALV 377 (444)
T ss_pred eecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhh
Confidence 677788888853 33333321 1 11 11222566666664557889999999877543 3446777766
Q ss_pred HHH
Q 007214 409 VDV 411 (612)
Q Consensus 409 ~~A 411 (612)
...
T Consensus 378 ~~~ 380 (444)
T PRK15115 378 EQA 380 (444)
T ss_pred hhh
Confidence 433
No 230
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=5.7e-07 Score=82.35 Aligned_cols=69 Identities=25% Similarity=0.419 Sum_probs=49.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC--CCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhh
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g--~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
+.++|+||+|+|||++++.+++++. -.++++++.+.......... +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998876 78888887776543211111 223333222235689999999987
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.57 E-value=2.8e-07 Score=94.63 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=63.5
Q ss_pred cccccceecCcc-cHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccc
Q 007214 167 KSMYKEVVLGGD-VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (612)
Q Consensus 167 ~~~f~dvvG~~e-~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~ 242 (612)
+.++.|+-+.+. .+..+..+..+.+.- ..+.+++|+||||||||+||-|++.++ |..+++++.+++..
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~~~--------~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVEFF--------ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CcccccccCCcchhHHHHHHHHHHHHHh--------ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 344555555443 345555555443322 145789999999999999999998876 88999999999887
Q ss_pred hhhhhHH--HHH-HHHHHHhhcCCeEEEEccchhh
Q 007214 243 SEKSGAA--RIN-EMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 243 ~~~~~~~--~ir-~lF~~A~~~~P~ILfIDEiD~l 274 (612)
....... ... .+.... ....+|+|||+-..
T Consensus 147 ~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 147 KLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 6432221 111 122212 23469999999765
No 232
>PRK06921 hypothetical protein; Provisional
Probab=98.57 E-value=4.9e-07 Score=93.41 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=46.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~ 273 (612)
...+++|+||||||||+|+.|+|+++ |..+++++..++..............++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999875 677888887665443211111122222222 2457999999954
No 233
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.3e-06 Score=92.41 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=92.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------------------eeEEecccccchhhhhHHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-----------------------FVFASGAEFTDSEKSGAARINEMFSIA 258 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~-----------------------~i~vs~s~~~~~~~~~~~~ir~lF~~A 258 (612)
+.|.++||+||.|+||+++|+++|+.+-.. |+.+.... .....+...+|.+-+.+
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EGKSITVEQIRQCNRLA 100 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CCCcCCHHHHHHHHHHH
Confidence 578899999999999999999999865221 22222110 00012234466655444
Q ss_pred hh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCC
Q 007214 259 RR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (612)
Q Consensus 259 ~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpg 334 (612)
.. ....|++||++|.+. ....|.||+.++.-. .++++|..|+.++.|-|.+++
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp-----------~~t~fiL~t~~~~~lLpTI~S-- 157 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN----------ESASNALLKTLEEPA-----------PNCLFLLVTHNQKRLLPTIVS-- 157 (319)
T ss_pred hhCcccCCceEEEecchhhhC----------HHHHHHHHHHhcCCC-----------CCeEEEEEECChhhChHHHHh--
Confidence 32 234799999999994 347799999998733 447888888889999999998
Q ss_pred ceeEEEEeCCCCHHHHHHHHHH
Q 007214 335 RIDRRLYIGLPDAKQRVQIFDV 356 (612)
Q Consensus 335 RFd~~I~v~~Pd~~eR~~Il~~ 356 (612)
|+ ..+.+++|+.++..+.+..
T Consensus 158 RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred cc-eeEeCCCCCHHHHHHHHHH
Confidence 88 5889999999988887764
No 234
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=4.5e-07 Score=89.87 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=82.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC---CeeEEecccccch-------------------h----------------
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGL---PFVFASGAEFTDS-------------------E---------------- 244 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~---~~i~vs~s~~~~~-------------------~---------------- 244 (612)
....++|+||+|+|||+|++.+.....- ..++++....... .
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 3567999999999999999999988732 2222222111100 0
Q ss_pred -hhhHHHHHHHHHHHhhc-CCeEEEEccchhhh-ccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 007214 245 -KSGAARINEMFSIARRN-APAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (612)
Q Consensus 245 -~~~~~~ir~lF~~A~~~-~P~ILfIDEiD~l~-~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (612)
......+..+++..... ...||+|||+|.+. .. . +....+..|...++....... ..+|+++++
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~--------~~~v~~~S~ 165 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS--E---EDKDFLKSLRSLLDSLLSQQN--------VSIVITGSS 165 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT--T---TTHHHHHHHHHHHHH----TT--------EEEEEEESS
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc--c---chHHHHHHHHHHHhhccccCC--------ceEEEECCc
Confidence 01123355666655543 34899999999996 21 1 223344444444444222211 133444443
Q ss_pred CC---C--CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC-CC-CccCCHHHHHHhcCCC
Q 007214 322 RP---D--ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-QL-AEDVNFEELVFRTVGF 379 (612)
Q Consensus 322 ~p---~--~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-~l-~~dvdl~~La~~t~G~ 379 (612)
.. + .-...+. +|+.. +.+++.+.++..++++...... .+ .++.+++.+...|.|.
T Consensus 166 ~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 166 DSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp HHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-
T ss_pred hHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC
Confidence 21 1 1112233 47876 9999999999999999876544 11 2445677777777764
No 235
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=4.7e-07 Score=96.12 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=91.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC-------------------------CeeEEecccccchhh-----hhHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-------------------------PFVFASGAEFTDSEK-----SGAARI 251 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~-------------------------~~i~vs~s~~~~~~~-----~~~~~i 251 (612)
+.|.++||+||+|+|||++|+++|+.+.. .|+.++...-.+..+ .+...+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 67889999999999999999999987532 123332211000001 234567
Q ss_pred HHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCcc
Q 007214 252 NEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327 (612)
Q Consensus 252 r~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD 327 (612)
|++.+.+.. ....|++||++|.+. ....+.++..++.... ++.+|.+|+.++.+.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld----------~~a~naLLk~LEep~~-----------~~~~Ilvth~~~~ll 157 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN----------LQAANSLLKVLEEPPP-----------QVVFLLVSHAADKVL 157 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC----------HHHHHHHHHHHHhCcC-----------CCEEEEEeCChHhCh
Confidence 777776653 234689999999883 2356778887776432 246677888888999
Q ss_pred ccccCCCceeEEEEeCCCCHHHHHHHHHH
Q 007214 328 LEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (612)
Q Consensus 328 ~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~ 356 (612)
+.+.+ |+ ..+.|++|+.++..+.+..
T Consensus 158 ~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 158 PTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99888 77 7889999999988877754
No 236
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=2.6e-06 Score=91.97 Aligned_cols=200 Identities=17% Similarity=0.153 Sum_probs=123.2
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEecccccchhhh
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFTDSEKS 246 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~~~~~~~~ 246 (612)
.+.|.+ .++..+.+|++.+. -.+.+.++.+.|-||||||.+...+-... ....++++|.++......
T Consensus 151 ~l~gRe---~e~~~v~~F~~~hl-----e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRE---LEMDIVREFFSLHL-----ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchH---HHHHHHHHHHHhhh-----hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 344544 34455555666552 34567789999999999999988764433 234588998875432111
Q ss_pred h----------------HHHHHHHHHH-Hhhc-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 007214 247 G----------------AARINEMFSI-ARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (612)
Q Consensus 247 ~----------------~~~ir~lF~~-A~~~-~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~ 308 (612)
. .......|.. .... .+-++++||+|.|+.++ +..|..+.......
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFewp~lp----- 286 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEWPKLP----- 286 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhcccCC-----
Confidence 0 1112233332 2222 37899999999997432 11222222222221
Q ss_pred cccccEEEEEecCCCCCccccccC----CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC--HHHHHHhcCCCcHH
Q 007214 309 SLRQAVIFICATNRPDELDLEFVR----PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN--FEELVFRTVGFSGA 382 (612)
Q Consensus 309 ~~~~~ViVIaaTN~p~~LD~aLlr----pgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd--l~~La~~t~G~sga 382 (612)
.+.+++|+.+|..+.-|..|-| -+.-...+.|++++.++..+||+..+.........+ ++..|+...|.||
T Consensus 287 --~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG- 363 (529)
T KOG2227|consen 287 --NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG- 363 (529)
T ss_pred --cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-
Confidence 2458899999987765544432 112235889999999999999998887766544433 6778888888887
Q ss_pred HHHH---HHHHHHHHHHHh
Q 007214 383 DIRN---LVNESGIMSVRK 398 (612)
Q Consensus 383 dL~~---lv~~A~~~A~r~ 398 (612)
|++. +|+.|..+|-..
T Consensus 364 DlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 364 DLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4554 466565555543
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=98.51 E-value=3.6e-07 Score=94.10 Aligned_cols=71 Identities=27% Similarity=0.426 Sum_probs=50.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchhhh--hHHHHHHHHHHHhhcCCeEEEEccchhh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS--GAARINEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~~~--~~~~ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
...+++|+||||||||+|+.+++.+ .|..+.++++.++...... ....+...+... ...+.+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3468999999999999999999765 4778888887776644211 111244455443 245689999999865
No 238
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.49 E-value=1.3e-07 Score=91.85 Aligned_cols=70 Identities=26% Similarity=0.480 Sum_probs=47.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhh--HHHHHHHHHHHhhcCCeEEEEccchhh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG--AARINEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~--~~~ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
...|++|+||||||||+||.+++.++ |.++.+++.+++....... .......+.... .+.+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 45789999999999999999998765 8899999988887653211 112334444443 3468999999643
No 239
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.47 E-value=1.5e-06 Score=95.79 Aligned_cols=186 Identities=21% Similarity=0.230 Sum_probs=107.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhhHHHHHHHHHH---------------HhhcCCeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGAARINEMFSI---------------ARRNAPAF 265 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~~~~ir~lF~~---------------A~~~~P~I 265 (612)
...++++|.+||||+++|+++.... +.||+.++|..+...... ..+|.. .....+++
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~-----~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE-----SELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH-----HHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 4679999999999999999996543 579999999987543211 111110 01123578
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeE-------
Q 007214 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR------- 338 (612)
Q Consensus 266 LfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~------- 338 (612)
|||||||.+.. .....|+..++......-.+......++.+|+||+.+- . ....+|+|..
T Consensus 237 l~ldei~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~l~ 303 (441)
T PRK10365 237 LFLDEIGDISP----------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYRLN 303 (441)
T ss_pred EEEeccccCCH----------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhc
Confidence 99999999952 23456666665432111111112233577888887632 1 2233455532
Q ss_pred EEEeCCCCHHHHHH----HHHHHhcCC----CC----CccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 007214 339 RLYIGLPDAKQRVQ----IFDVHSAGK----QL----AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406 (612)
Q Consensus 339 ~I~v~~Pd~~eR~~----Il~~~l~~~----~l----~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~ 406 (612)
.+.+..|...+|.+ +++.++... .. -.+..+..|....---+.++|+++++.|...+ ....|+.+
T Consensus 304 ~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~ 380 (441)
T PRK10365 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISER 380 (441)
T ss_pred cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchH
Confidence 56777777777744 333333221 10 11122455555543346788888888876543 33457777
Q ss_pred HHHH
Q 007214 407 DIVD 410 (612)
Q Consensus 407 dl~~ 410 (612)
++..
T Consensus 381 ~l~~ 384 (441)
T PRK10365 381 ELPL 384 (441)
T ss_pred hCch
Confidence 6643
No 240
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.45 E-value=3.4e-06 Score=85.68 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=117.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-C--CCe--------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-G--LPF-------- 232 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g--~~~-------- 232 (612)
++.+.+|+.+.+.++....|..+..--.- .++|+|||+|+||-|.+-++-+++ | ++=
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~d~------------PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSSTGDF------------PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcccCCC------------CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 44566778887777766666655441111 269999999999999999998876 2 221
Q ss_pred ----------eEEecccccch----hh-hhHHHHHHHHHHHhhcCC---------eEEEEccchhhhccCCCCChhHHHH
Q 007214 233 ----------VFASGAEFTDS----EK-SGAARINEMFSIARRNAP---------AFVFVDEIDAIAGRHARKDPRRRAT 288 (612)
Q Consensus 233 ----------i~vs~s~~~~~----~~-~~~~~ir~lF~~A~~~~P---------~ILfIDEiD~l~~~~~~~~~~~~~~ 288 (612)
-.++.....+. .| ...-.+.++.++..+.+| .+++|.|.|.|.. ..
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----------dA 143 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----------DA 143 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH----------HH
Confidence 11111111111 11 111235566655444333 5899999999952 24
Q ss_pred HHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccC-
Q 007214 289 FEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV- 367 (612)
Q Consensus 289 l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv- 367 (612)
..+|-..|+.+..+ +.+|..+|....+-+++++ |+ ..|.++.|+.++-..++...+.+..+.-..
T Consensus 144 Q~aLRRTMEkYs~~-----------~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 144 QHALRRTMEKYSSN-----------CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred HHHHHHHHHHHhcC-----------ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 45666667665432 5778889999999889988 76 679999999999999999888776654332
Q ss_pred CHHHHHHhcCC
Q 007214 368 NFEELVFRTVG 378 (612)
Q Consensus 368 dl~~La~~t~G 378 (612)
-+..+|+.+.|
T Consensus 210 ~l~rIa~kS~~ 220 (351)
T KOG2035|consen 210 LLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHhcc
Confidence 25667766554
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.41 E-value=6e-07 Score=83.32 Aligned_cols=59 Identities=36% Similarity=0.631 Sum_probs=43.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC---CCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g---~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~ 275 (612)
...|||+|+|||||+++|+++....+ .+|+.++|..+. .++++.+ .+..|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------HHHHHHc---CCCEEEECChHHCC
Confidence 45699999999999999999987664 377777777644 3355554 45689999999984
No 242
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=1.9e-06 Score=78.18 Aligned_cols=85 Identities=21% Similarity=0.353 Sum_probs=53.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc--------CCCeeEEecccccchhh----------------hhHHH-HHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES--------GLPFVFASGAEFTDSEK----------------SGAAR-INEMFSIA 258 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~--------g~~~i~vs~s~~~~~~~----------------~~~~~-ir~lF~~A 258 (612)
.+.++++||||+|||++++.++... ..+++.+++........ ..... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999877 77888888766542100 01122 23333444
Q ss_pred hhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 007214 259 RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (612)
Q Consensus 259 ~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld 297 (612)
......+|+|||+|.+. + ...++.|...++
T Consensus 84 ~~~~~~~lviDe~~~l~-~--------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S--------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T--------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-C--------HHHHHHHHHHHh
Confidence 44444599999999984 1 345566655555
No 243
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.36 E-value=1.6e-06 Score=93.28 Aligned_cols=139 Identities=19% Similarity=0.274 Sum_probs=81.7
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCC-CeeEEecccccchhhhhHH-------HHHHHHHHHhhcCCeEEEEccch
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL-PFVFASGAEFTDSEKSGAA-------RINEMFSIARRNAPAFVFVDEID 272 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~-~~i~vs~s~~~~~~~~~~~-------~ir~lF~~A~~~~P~ILfIDEiD 272 (612)
...|+|++||||+|+|||+|+-.+...+.. .=..+...+|+........ -+..+-+.... ...+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 457999999999999999999999887654 1122222333332111111 12222222222 23599999997
Q ss_pred hhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC-CCcc-ccccCCCceeEEEEeCCCCHHHH
Q 007214 273 AIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP-DELD-LEFVRPGRIDRRLYIGLPDAKQR 350 (612)
Q Consensus 273 ~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p-~~LD-~aLlrpgRFd~~I~v~~Pd~~eR 350 (612)
.- +......+..|+..+-. .+|++|+|+|++ +.|- ..|.| .+| + | -
T Consensus 138 V~-------DiaDAmil~rLf~~l~~-------------~gvvlVaTSN~~P~~Ly~~gl~r-~~F-----l--p----~ 185 (362)
T PF03969_consen 138 VT-------DIADAMILKRLFEALFK-------------RGVVLVATSNRPPEDLYKNGLQR-ERF-----L--P----F 185 (362)
T ss_pred cc-------chhHHHHHHHHHHHHHH-------------CCCEEEecCCCChHHHcCCcccH-HHH-----H--H----H
Confidence 43 33345567777776643 348999999984 3332 22222 233 1 1 3
Q ss_pred HHHHHHHhcCCCCCccCCHHHH
Q 007214 351 VQIFDVHSAGKQLAEDVNFEEL 372 (612)
Q Consensus 351 ~~Il~~~l~~~~l~~dvdl~~L 372 (612)
.++++.++.-..+....|+...
T Consensus 186 I~~l~~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 186 IDLLKRRCDVVELDGGVDYRRR 207 (362)
T ss_pred HHHHHhceEEEEecCCCchhhh
Confidence 5667777776677777776654
No 244
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.34 E-value=1.1e-05 Score=88.50 Aligned_cols=206 Identities=18% Similarity=0.215 Sum_probs=108.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc-c---
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA-E--- 239 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s-~--- 239 (612)
+..+.+.+||+.. |+.|.++-.|++.-..+. ..-..+-+||+||+||||||.++-+|+++|..++.=+.. .
T Consensus 75 Ky~P~t~eeLAVH---kkKI~eVk~WL~~~~~~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~ 149 (634)
T KOG1970|consen 75 KYKPRTLEELAVH---KKKISEVKQWLKQVAEFT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKE 149 (634)
T ss_pred hcCcccHHHHhhh---HHhHHHHHHHHHHHHHhc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccc
Confidence 4556777787654 345555555655110000 011345688999999999999999999999877654311 1
Q ss_pred ---cc------c-hhhhhHHHHHHHHHHHh------------hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 007214 240 ---FT------D-SEKSGAARINEMFSIAR------------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (612)
Q Consensus 240 ---~~------~-~~~~~~~~ir~lF~~A~------------~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld 297 (612)
+. . .+.............+. ...|.+|+|||+-..+... ....+..+|.++-
T Consensus 150 ~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d------~~~~f~evL~~y~ 223 (634)
T KOG1970|consen 150 PENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD------DSETFREVLRLYV 223 (634)
T ss_pred cccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh------hHHHHHHHHHHHH
Confidence 11 1 01111122222223331 1346799999998776431 2334444554443
Q ss_pred CCcccCCcccccccccEEEEEe-cCCCCCccccccCC------CceeEEEEeCCCCHHHHHHHHHHHhcCCC--CC----
Q 007214 298 GDKERTGIDRFSLRQAVIFICA-TNRPDELDLEFVRP------GRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LA---- 364 (612)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaa-TN~p~~LD~aLlrp------gRFd~~I~v~~Pd~~eR~~Il~~~l~~~~--l~---- 364 (612)
.... .++|++.| ++.++..++-.+.| -|+ .+|.|.+-...-..+.|+..+.... ..
T Consensus 224 s~g~----------~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 224 SIGR----------CPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred hcCC----------CcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 3221 22333333 22333333322221 133 3677877666555566655543221 11
Q ss_pred -ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 365 -EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 365 -~dvdl~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
....++.++.. +++||+.+++...+.+
T Consensus 293 ~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 293 PDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred chhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 12335555555 3459999999888776
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.34 E-value=1.9e-06 Score=89.42 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=77.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCC---eeEEecccccchhhhhHHHHHHHHHHHh-----------hcCCeEEEEc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEFTDSEKSGAARINEMFSIAR-----------RNAPAFVFVD 269 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~---~i~vs~s~~~~~~~~~~~~ir~lF~~A~-----------~~~P~ILfID 269 (612)
.+.+||+||+|||||++++.+-.++.-. ...++++... .+..+..+.+..- ....+|+|||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T-----ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT-----TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH-----HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC-----CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 4679999999999999999887665432 2233333322 1222332222110 1234799999
Q ss_pred cchhhhccCCCCChhHHHHHHHHHHHhc---CCcccCCcccccccccEEEEEecCCCC---CccccccCCCceeEEEEeC
Q 007214 270 EIDAIAGRHARKDPRRRATFEALIAQLD---GDKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIG 343 (612)
Q Consensus 270 EiD~l~~~~~~~~~~~~~~l~~LL~~ld---~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd~~I~v~ 343 (612)
|+..-.... ...+...+||.++- |+...... .+..-.++.+|||+|.+. .+++.++| .| ..+.++
T Consensus 108 DlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~-~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~ 178 (272)
T PF12775_consen 108 DLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKL-EWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIP 178 (272)
T ss_dssp TTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTT-EEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE--
T ss_pred ccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCc-EEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEec
Confidence 998543221 11222334444432 22222111 122234688899988643 47788887 77 689999
Q ss_pred CCCHHHHHHHHHHHhc
Q 007214 344 LPDAKQRVQIFDVHSA 359 (612)
Q Consensus 344 ~Pd~~eR~~Il~~~l~ 359 (612)
.|+.+....|+...+.
T Consensus 179 ~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQ 194 (272)
T ss_dssp --TCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHh
Confidence 9999999888776554
No 246
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.32 E-value=5e-06 Score=84.14 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=79.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCCh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP 283 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~ 283 (612)
..|..++||+|||||.++|++|+.+|.+++..+|++-.+.. .+..+|.-+... .+-+++||++.+- .
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~-----~l~ril~G~~~~-GaW~cfdefnrl~-------~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQ-----SLSRILKGLAQS-GAWLCFDEFNRLS-------E 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HH-----HHHHHHHHHHHH-T-EEEEETCCCSS-------H
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHH-----HHHHHHHHHhhc-Cchhhhhhhhhhh-------H
Confidence 35778999999999999999999999999999999966543 356666655554 3789999999873 2
Q ss_pred hHHHHHHHHHHH----hcCCcccC--CcccccccccEEEEEecCC----CCCccccccCCCceeEEEEeCCCCHHHHHHH
Q 007214 284 RRRATFEALIAQ----LDGDKERT--GIDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (612)
Q Consensus 284 ~~~~~l~~LL~~----ld~~~~~~--~~~~~~~~~~ViVIaaTN~----p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~I 353 (612)
+.-..+.+.+.. +......- .......+.++-++.|.|. ...||+.|+. -| |.+.+..||...-.++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHH
Confidence 222333333332 22211110 0111223344566667774 3478888876 55 8899999998876665
Q ss_pred HH
Q 007214 354 FD 355 (612)
Q Consensus 354 l~ 355 (612)
+-
T Consensus 176 ~L 177 (231)
T PF12774_consen 176 LL 177 (231)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 247
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.30 E-value=5.8e-06 Score=86.52 Aligned_cols=207 Identities=18% Similarity=0.214 Sum_probs=118.0
Q ss_pred CCcccccceecCccc-HHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHH---HcCCCeeEEecccc
Q 007214 165 DTKSMYKEVVLGGDV-WDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEF 240 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~-k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~---e~g~~~i~vs~s~~ 240 (612)
+....|+.+++.... |..+.+.. ++.. ....+|+.|.+||||-++||+.-. ....||+.++|..+
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~-------k~Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQ-------KLAM----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHH-------Hhhc----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 345667777776532 22222222 2222 223499999999999999999843 33779999999998
Q ss_pred cchhhhh--------HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 241 TDSEKSG--------AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 241 ~~~~~~~--------~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
.+...++ ..--..+|+.|... -+|+|||..+.++ ....||..+....-+.-.+.....-
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~----------lQaKLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPR----------LQAKLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHH----------HHHHHHHHhcCCceeecCCcceEEE
Confidence 7653322 23345788888554 5999999877432 4455666664433222222233445
Q ss_pred cEEEEEecCCC--CCccccccCCCcee--EEEEeCCCCHHHHHH--------HHHHHhcCCCCC-ccCC---HHHHHHhc
Q 007214 313 AVIFICATNRP--DELDLEFVRPGRID--RRLYIGLPDAKQRVQ--------IFDVHSAGKQLA-EDVN---FEELVFRT 376 (612)
Q Consensus 313 ~ViVIaaTN~p--~~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~--------Il~~~l~~~~l~-~dvd---l~~La~~t 376 (612)
+|.||+||..+ +..+..-.|..-|- .++.+..|...+|.+ .++.+....... +..+ +..|.+..
T Consensus 334 dVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~ 413 (511)
T COG3283 334 DVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYA 413 (511)
T ss_pred EEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcC
Confidence 79999999654 22222222221121 266777777777643 122233222211 2222 33444333
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 007214 377 VGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 377 ~G~sgadL~~lv~~A~~~A 395 (612)
---+.++|.|.+-+|+...
T Consensus 414 WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 414 WPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred CCccHHHHHHHHHHHHHHh
Confidence 3336788888888877554
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.25 E-value=1e-05 Score=75.33 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=48.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhh-------------------------hhHHHHHHHHHHH
Q 007214 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK-------------------------SGAARINEMFSIA 258 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~-------------------------~~~~~ir~lF~~A 258 (612)
++|+||||+|||+++..++... +.++++++......... ......+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777777654322100 0011122334556
Q ss_pred hhcCCeEEEEccchhhhc
Q 007214 259 RRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 259 ~~~~P~ILfIDEiD~l~~ 276 (612)
....|.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667889999999999864
No 249
>PF05729 NACHT: NACHT domain
Probab=98.23 E-value=1.6e-05 Score=74.68 Aligned_cols=138 Identities=21% Similarity=0.289 Sum_probs=73.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---C-----CC-eeEEecccccchhhh--h-----------HHHHHH-HHHHHhhcC
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES---G-----LP-FVFASGAEFTDSEKS--G-----------AARINE-MFSIARRNA 262 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g-----~~-~i~vs~s~~~~~~~~--~-----------~~~ir~-lF~~A~~~~ 262 (612)
-++|+|+||+|||++++.++..+ + .+ +++.++.+....... . ...... ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48899999999999999998754 1 12 234444443332100 0 011112 122334556
Q ss_pred CeEEEEccchhhhccCCCCChhHHHHHHHHH-HHhcCCcccCCcccccccccEEEEEecCCCC--CccccccCCCceeEE
Q 007214 263 PAFVFVDEIDAIAGRHARKDPRRRATFEALI-AQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRR 339 (612)
Q Consensus 263 P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL-~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~~ 339 (612)
+.+|+||.+|.+...... ........++ ..+.. ... .++-++.|+.... .+...+.. ...
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~-~~~---------~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ-ALP---------PGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh-ccC---------CCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 789999999999642211 1111222222 22222 001 1234444443222 12222222 157
Q ss_pred EEeCCCCHHHHHHHHHHHhcC
Q 007214 340 LYIGLPDAKQRVQIFDVHSAG 360 (612)
Q Consensus 340 I~v~~Pd~~eR~~Il~~~l~~ 360 (612)
+.++..+.+++.++++.++++
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEECCCCHHHHHHHHHHHhhc
Confidence 889999999999999987753
No 250
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.21 E-value=1.9e-05 Score=81.63 Aligned_cols=171 Identities=16% Similarity=0.182 Sum_probs=91.6
Q ss_pred HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH--cCCCe---eEEecccccchh-----------
Q 007214 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE--SGLPF---VFASGAEFTDSE----------- 244 (612)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e--~g~~~---i~vs~s~~~~~~----------- 244 (612)
.+++++.+.|.... +..+-|.|+|++|+|||+||+.+++. ..-.| +.++.+.-....
T Consensus 3 ~~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 46777777776641 35667899999999999999999976 33322 233332211000
Q ss_pred ---------hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 245 ---------KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 245 ---------~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
.........+.+ .-...+++|+||+++... .+..+...+... ..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~~------------~~~~l~~~~~~~-----------~~~~k 131 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRE-LLKDKRCLLVLDDVWDEE------------DLEELREPLPSF-----------SSGSK 131 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHH-HHCCTSEEEEEEEE-SHH------------HH-------HCH-----------HSS-E
T ss_pred ccccccccccccccccccchh-hhccccceeeeeeecccc------------cccccccccccc-----------ccccc
Confidence 001112233333 334458999999998542 222222222111 11246
Q ss_pred EEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCC----CCccCCHHHHHHhcCCCcHHHHHHH
Q 007214 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ----LAEDVNFEELVFRTVGFSGADIRNL 387 (612)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~----l~~dvdl~~La~~t~G~sgadL~~l 387 (612)
||.||...... .... .-+..++++..+.++-.++|..+..... ...+.....++..+.|. |--|..+
T Consensus 132 ilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 132 ILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp EEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccc-cccc---ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 67777654322 1111 1157899999999999999998875443 11122256888888774 4334444
No 251
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.17 E-value=4.2e-06 Score=92.94 Aligned_cols=231 Identities=14% Similarity=0.107 Sum_probs=131.0
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhh--cCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhh
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYE--RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK 245 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~--~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~ 245 (612)
.-|-.|-|.+.+|.-|-- ..+-.-.++.. ..++..-+|++.|.||||||-+.+++++-+-..++ +++..-.. .|
T Consensus 342 Sl~PsIyGhe~VK~GilL--~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSa-AG 417 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILL--SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSA-AG 417 (764)
T ss_pred hhCccccchHHHHhhHHH--HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCccccc-cc
Confidence 446677788887764321 11112222222 23455667999999999999999999986655433 33222111 11
Q ss_pred hhHHHHH--HHHH---HHh---hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc--CCcccccccccEE
Q 007214 246 SGAARIN--EMFS---IAR---RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER--TGIDRFSLRQAVI 315 (612)
Q Consensus 246 ~~~~~ir--~lF~---~A~---~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~--~~~~~~~~~~~Vi 315 (612)
.+++.++ .-++ +|- -....|-+|||+|.+.-+ -..++++.|+.-.-+ ...-.-+.+...-
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~----------dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK----------DQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH----------hHHHHHHHHHhheehheecceEEeecchhh
Confidence 1111000 0000 010 012358899999998421 134566666543211 1111112223346
Q ss_pred EEEecCCCC-------------CccccccCCCceeEE-EEeCCCCHHHHHHHHHHHhcCCCC-C----------------
Q 007214 316 FICATNRPD-------------ELDLEFVRPGRIDRR-LYIGLPDAKQRVQIFDVHSAGKQL-A---------------- 364 (612)
Q Consensus 316 VIaaTN~p~-------------~LD~aLlrpgRFd~~-I~v~~Pd~~eR~~Il~~~l~~~~l-~---------------- 364 (612)
|+||+|... .+++++++ |||.. |-++-|++..-..|-++.+..... .
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrk 565 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRK 565 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 888888743 47889999 99974 556888887766665543321110 0
Q ss_pred ---------ccCC----------HHHH--------HHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 365 ---------EDVN----------FEEL--------VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 365 ---------~dvd----------l~~L--------a~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
+.+. +..+ .+.+.+.|.++|+.+++-+-.+|..+-+..||.+|+++|.+-
T Consensus 566 Yi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 566 YIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVEL 642 (764)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence 0000 0000 111346788999999999988888888889999999998764
No 252
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.17 E-value=5.1e-06 Score=94.98 Aligned_cols=197 Identities=18% Similarity=0.232 Sum_probs=110.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeE-EecccccchhhhhHHHHHHHH--HH---Hh---hcCCeEEEEccchh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF-ASGAEFTDSEKSGAARINEMF--SI---AR---RNAPAFVFVDEIDA 273 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~-vs~s~~~~~~~~~~~~ir~lF--~~---A~---~~~P~ILfIDEiD~ 273 (612)
..-+|||.|-||||||.|.|.+++-+-..++. ..++.- .|.++..+++-+ ++ |- ...+.|.+|||+|.
T Consensus 318 GDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~---~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdK 394 (682)
T COG1241 318 GDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA---AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDK 394 (682)
T ss_pred cceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc---cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccC
Confidence 34679999999999999999999876544331 111111 111111112111 11 10 12357999999998
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCccc---CCcccccccccEEEEEecCCCC-------------CccccccCCCcee
Q 007214 274 IAGRHARKDPRRRATFEALIAQLDGDKER---TGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRID 337 (612)
Q Consensus 274 l~~~~~~~~~~~~~~l~~LL~~ld~~~~~---~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRFd 337 (612)
+- ....+.+.+.|+...-+ .|+ ....+...-|+||+|... .|++.|++ |||
T Consensus 395 m~----------~~dr~aihEaMEQQtIsIaKAGI-~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFD 461 (682)
T COG1241 395 MN----------EEDRVAIHEAMEQQTISIAKAGI-TATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFD 461 (682)
T ss_pred CC----------hHHHHHHHHHHHhcEeeecccce-eeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCC
Confidence 73 12345666666643221 111 112233457888999754 47889999 999
Q ss_pred EEEEe-CCCCHHHHHH----HHHHHhcCCC---------------------------------CCccCCHHHHH------
Q 007214 338 RRLYI-GLPDAKQRVQ----IFDVHSAGKQ---------------------------------LAEDVNFEELV------ 373 (612)
Q Consensus 338 ~~I~v-~~Pd~~eR~~----Il~~~l~~~~---------------------------------l~~dvdl~~La------ 373 (612)
..+.+ +.|+.+.-.. |+..|..... ...+...+.|.
T Consensus 462 Lifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~ 541 (682)
T COG1241 462 LIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEM 541 (682)
T ss_pred eeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHh
Confidence 86655 5576654433 3444421110 00000001110
Q ss_pred ---------HhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 374 ---------FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 374 ---------~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
..+.-.|.++|+.+++-|-..|..+-+..|+.+|+.+|++-+
T Consensus 542 Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv 592 (682)
T COG1241 542 RKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLV 592 (682)
T ss_pred hhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 011235678888888888777777777788888888777543
No 253
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.14 E-value=1.5e-05 Score=78.90 Aligned_cols=77 Identities=26% Similarity=0.367 Sum_probs=53.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccch-hhh-----------------------hHHHHH
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-EKS-----------------------GAARIN 252 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~-~~~-----------------------~~~~ir 252 (612)
|++...-++++||||+|||+++..++.+ .|.+.++++..++... ... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 5666677899999999999999998754 3678889988763211 100 011133
Q ss_pred HHHHHHhhcCCeEEEEccchhhhc
Q 007214 253 EMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 253 ~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
.+.+.+....|++|+||-+.++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 344445555789999999999864
No 254
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.14 E-value=1.5e-06 Score=92.54 Aligned_cols=196 Identities=16% Similarity=0.222 Sum_probs=106.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc-----ch----hhhhHHHHH-HHHHHHhhcCCeEEEEccch
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT-----DS----EKSGAARIN-EMFSIARRNAPAFVFVDEID 272 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~-----~~----~~~~~~~ir-~lF~~A~~~~P~ILfIDEiD 272 (612)
..-++||.|.||||||.|.+.+++-... -+++++.... .. ...+...+. ..+-.| ...|++|||+|
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvla---d~GiccIDe~d 131 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLA---DGGICCIDEFD 131 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHC---TTSEEEECTTT
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCccceeccccccceeEEeCCchhcc---cCceeeecccc
Confidence 4457999999999999999988654322 3334433311 11 000110111 223333 23699999999
Q ss_pred hhhccCCCCChhHHHHHHHHHHHhcCCcccC--CcccccccccEEEEEecCCCC-------------CccccccCCCcee
Q 007214 273 AIAGRHARKDPRRRATFEALIAQLDGDKERT--GIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRID 337 (612)
Q Consensus 273 ~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRFd 337 (612)
.+-. .....|++.|+...-.- ..-....+...-|+||+|... .+++.|++ |||
T Consensus 132 k~~~----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFD 199 (331)
T PF00493_consen 132 KMKE----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFD 199 (331)
T ss_dssp T--C----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-S
T ss_pred cccc----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcC
Confidence 8842 23567777777532211 111123345578999999765 47889999 999
Q ss_pred EEEEe-CCCCHHHHHHHHHHHhcCCCCC---------c---cCC------HHHHHH------------------------
Q 007214 338 RRLYI-GLPDAKQRVQIFDVHSAGKQLA---------E---DVN------FEELVF------------------------ 374 (612)
Q Consensus 338 ~~I~v-~~Pd~~eR~~Il~~~l~~~~l~---------~---dvd------l~~La~------------------------ 374 (612)
..+.+ +.|+.+.-..+.++.+...... . .++ +-..++
T Consensus 200 Lif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~ 279 (331)
T PF00493_consen 200 LIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRK 279 (331)
T ss_dssp EEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCH
T ss_pred EEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcc
Confidence 88765 7788766666655443322110 0 011 111122
Q ss_pred ------hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 375 ------RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 375 ------~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
.....|.+.|+.+++-|...|..+.+..|+.+|+..|+.=
T Consensus 280 ~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L 325 (331)
T PF00493_consen 280 ESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRL 325 (331)
T ss_dssp CHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHH
Confidence 1123566788899999999998899999999999998863
No 255
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.12 E-value=6.6e-05 Score=84.29 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=74.4
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhH-----HHHHHHHHHHh---hcCCeEEEEccch
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGA-----ARINEMFSIAR---RNAPAFVFVDEID 272 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~-----~~ir~lF~~A~---~~~P~ILfIDEiD 272 (612)
.+..-+|||+|.||||||.+.+.+++-+..-.+ .++-.-.. .+.++ ..-+++.-+.- .....|-+|||+|
T Consensus 459 ~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSa-vGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 459 FRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSA-VGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFD 536 (804)
T ss_pred ccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccch-hcceeeEEecCccceeeeecCcEEEcCCceEEchhhh
Confidence 344567999999999999999999886533322 22111000 00000 00011111100 1123578899999
Q ss_pred hhhccCCCCChhHHHHHHHHHHHhcCCccc---CCcccccccccEEEEEecCCCC-------------CccccccCCCce
Q 007214 273 AIAGRHARKDPRRRATFEALIAQLDGDKER---TGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRI 336 (612)
Q Consensus 273 ~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~---~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRF 336 (612)
.+.. .+-+-|++.|+.-.-+ .|+ --..+...-|+|++|... .|+|.|++ ||
T Consensus 537 KM~d----------StrSvLhEvMEQQTvSIAKAGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RF 603 (804)
T KOG0478|consen 537 KMSD----------STRSVLHEVMEQQTLSIAKAGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RF 603 (804)
T ss_pred hhhH----------HHHHHHHHHHHHhhhhHhhcce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hh
Confidence 9831 1233444444431110 010 011122356889998532 47999999 99
Q ss_pred eEEEE-eCCCCHHHHHHHHH
Q 007214 337 DRRLY-IGLPDAKQRVQIFD 355 (612)
Q Consensus 337 d~~I~-v~~Pd~~eR~~Il~ 355 (612)
|.++- ++.||+..-+.|-.
T Consensus 604 DLIylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 604 DLIFLLLDKPDERSDRRLAD 623 (804)
T ss_pred cEEEEEecCcchhHHHHHHH
Confidence 98554 58888774444443
No 256
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00017 Score=72.91 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=111.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCC---CeeEEecccccch------------------hhhhHHHHHHHHHHHhh-cCC
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGL---PFVFASGAEFTDS------------------EKSGAARINEMFSIARR-NAP 263 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~---~~i~vs~s~~~~~------------------~~~~~~~ir~lF~~A~~-~~P 263 (612)
-+.++|+-|||||+++|++...++- -.++++...+... .......-+.+.+..++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 3678999999999999988766532 2334443332211 00112223444444444 456
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCC------Ccee
Q 007214 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP------GRID 337 (612)
Q Consensus 264 ~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp------gRFd 337 (612)
.++++||.+.+... ....+ .++..++.-.. ..-.++.++-. .|.+.+++| -|++
T Consensus 133 v~l~vdEah~L~~~-------~le~L-rll~nl~~~~~--------~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 133 VVLMVDEAHDLNDS-------ALEAL-RLLTNLEEDSS--------KLLSIVLIGQP----KLRPRLRLPVLRELEQRID 192 (269)
T ss_pred eEEeehhHhhhChh-------HHHHH-HHHHhhccccc--------CceeeeecCCc----ccchhhchHHHHhhhheEE
Confidence 89999999998532 11122 22332222111 11235555533 233322222 3888
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCC----CccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 338 RRLYIGLPDAKQRVQIFDVHSAGKQL----AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~~~l~~~~l----~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
..|++++.+.++-..++++++..-.. ..+-.+..+...+.| .|.-+.++|..|...|...+...|+...+
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 77999999999899999988865433 333346777777888 67889999999998998888888876554
No 257
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=3e-05 Score=95.56 Aligned_cols=179 Identities=21% Similarity=0.246 Sum_probs=99.6
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCe---eEEeccc--
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF---VFASGAE-- 239 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~---i~vs~s~-- 239 (612)
.+...|++++|.++..+.+..++.. +....+-+-|+||+|+||||||+++++....+| ++++...
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 3456789999988665555554421 223456789999999999999999988765443 1221100
Q ss_pred -----ccc----hh----hhhHHHHHH-------------HHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHH
Q 007214 240 -----FTD----SE----KSGAARINE-------------MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALI 293 (612)
Q Consensus 240 -----~~~----~~----~~~~~~ir~-------------lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL 293 (612)
+.. .. ......+.. ..+..-..++.+|+||++|.. ..+..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------~~l~~L~ 315 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------DVLDALA 315 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------HHHHHHH
Confidence 000 00 000000111 112222355789999998743 1233333
Q ss_pred HHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCH----
Q 007214 294 AQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF---- 369 (612)
Q Consensus 294 ~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl---- 369 (612)
...+.+.. +-.||.||.+... ++....++.++++.|+.++..++|..++-+....+ .++
T Consensus 316 ~~~~~~~~-----------GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~ 378 (1153)
T PLN03210 316 GQTQWFGS-----------GSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELA 378 (1153)
T ss_pred hhCccCCC-----------CcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence 32222211 1345666765433 22224678899999999999999998875433221 122
Q ss_pred HHHHHhcCCCcHH
Q 007214 370 EELVFRTVGFSGA 382 (612)
Q Consensus 370 ~~La~~t~G~sga 382 (612)
.++++.+.|..-|
T Consensus 379 ~~iv~~c~GLPLA 391 (1153)
T PLN03210 379 SEVALRAGNLPLG 391 (1153)
T ss_pred HHHHHHhCCCcHH
Confidence 3456666676533
No 258
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.07 E-value=4.5e-06 Score=93.31 Aligned_cols=187 Identities=24% Similarity=0.316 Sum_probs=111.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH--cCCCeeEEecccccchhhhh------H--------HHHHHHHHHHhhcCCeEEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE--SGLPFVFASGAEFTDSEKSG------A--------ARINEMFSIARRNAPAFVF 267 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e--~g~~~i~vs~s~~~~~~~~~------~--------~~ir~lF~~A~~~~P~ILf 267 (612)
.-.+||.|.|||||-.++|++-.. ..-||+.++|..+.+...+. . +-.+..+++|.. ..||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccH
Confidence 345999999999999999999543 46699999999876532111 0 112233333322 3699
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeE-------EE
Q 007214 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RL 340 (612)
Q Consensus 268 IDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I 340 (612)
+|||..+. ......||..+....-.+-.... .+-.|-||+||+++- ..|.+-|||.. ..
T Consensus 413 ldeIgd~p----------~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDMP----------LALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhch----------HHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 99998773 23556778777654433321222 556699999998742 25666788843 45
Q ss_pred EeCCCCHHHHHH---HHHHHhcCC-----CCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 341 YIGLPDAKQRVQ---IFDVHSAGK-----QLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 341 ~v~~Pd~~eR~~---Il~~~l~~~-----~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
.+.+|...+|.+ .+..++... .++++.-..-++..-+| +-++|.|+++.++..+ ....|...|+-..
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~ 553 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPE 553 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHH
Confidence 567777776643 333333221 22222212233444455 6788999998877655 3344555554433
No 259
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.05 E-value=1.7e-05 Score=83.49 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=90.6
Q ss_pred CcccHHHHHHHHHHhCCchhh----hhc---CCccCceEEEEcCCCChHHHHHHHHHHHcCCCe-eEEecccccchhhhh
Q 007214 176 GGDVWDLLDELMIYMGNPMQY----YER---GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-VFASGAEFTDSEKSG 247 (612)
Q Consensus 176 ~~e~k~~L~elv~~l~~p~~~----~~~---g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~-i~vs~s~~~~~~~~~ 247 (612)
+..+.+.|..+.+.+..+..- ..+ ...+++|+.|||+-|.|||+|.-.+...+..+- ..+....|+......
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 334455666666533332211 112 234789999999999999999999988765432 223323333322111
Q ss_pred HHH-------HHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 248 AAR-------INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 248 ~~~-------ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
... +..+-....+ .-.+|+|||+.- .+....-.+..|++.|-. ++|++++|+
T Consensus 110 l~~l~g~~dpl~~iA~~~~~-~~~vLCfDEF~V-------tDI~DAMiL~rL~~~Lf~-------------~GV~lvaTS 168 (367)
T COG1485 110 LHTLQGQTDPLPPIADELAA-ETRVLCFDEFEV-------TDIADAMILGRLLEALFA-------------RGVVLVATS 168 (367)
T ss_pred HHHHcCCCCccHHHHHHHHh-cCCEEEeeeeee-------cChHHHHHHHHHHHHHHH-------------CCcEEEEeC
Confidence 111 1111111111 225999999862 233345577888887754 358999999
Q ss_pred CC-CCCccc-cccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHH
Q 007214 321 NR-PDELDL-EFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFE 370 (612)
Q Consensus 321 N~-p~~LD~-aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~ 370 (612)
|. |+.|-+ .|.| +|| +| -.++++.++.-..++...|..
T Consensus 169 N~~P~~LY~dGlqR-~~F-------LP----~I~li~~~~~v~~vD~~~DYR 208 (367)
T COG1485 169 NTAPDNLYKDGLQR-ERF-------LP----AIDLIKSHFEVVNVDGPVDYR 208 (367)
T ss_pred CCChHHhcccchhH-Hhh-------HH----HHHHHHHheEEEEecCCcccc
Confidence 97 344322 2222 244 22 356777777766666666643
No 260
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.01 E-value=5.1e-05 Score=73.28 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=54.0
Q ss_pred EEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchh-------hh-----------------------hH-----
Q 007214 207 VLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-------KS-----------------------GA----- 248 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~-------~~-----------------------~~----- 248 (612)
+|++||||||||+++..++.+ .|.++++++..+-.+.. +. +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999988654 37788777754322110 00 00
Q ss_pred HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 249 ~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
..+..+...+....|.+|+||++..+... ........+..++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~---~~~~~~~~i~~l~~~l~~ 128 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM---EQSTARLEIRRLLFALKR 128 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc---ChHHHHHHHHHHHHHHHH
Confidence 01233444445667999999999988532 112233344555555543
No 261
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.97 E-value=9.6e-06 Score=72.06 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=52.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHH
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRR 286 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~ 286 (612)
|.|+||||+|||++|+.+|..+.-.+-.-....+-.. ..-.+.+.-.+ .+ .++++||+...... . ..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~-----~~~~~~w~gY~-~q-~vvi~DD~~~~~~~---~---~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTR-----NPGDKFWDGYQ-GQ-PVVIIDDFGQDNDG---Y---NY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeC-----CCccchhhccC-CC-cEEEEeecCccccc---c---ch
Confidence 5799999999999999998776432211100111000 00112222222 33 57888999765311 0 11
Q ss_pred HHHHHHHHHhcCCcccCCccccc----ccccEEEEEecCC
Q 007214 287 ATFEALIAQLDGDKERTGIDRFS----LRQAVIFICATNR 322 (612)
Q Consensus 287 ~~l~~LL~~ld~~~~~~~~~~~~----~~~~ViVIaaTN~ 322 (612)
.....++..++...-...+.... .-...+||+|||.
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 24455555555443332211111 1123588888883
No 262
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=6.9e-05 Score=78.10 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=81.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCee--------EEecccc--cchhh----hhHHHHHHHHHHHhh----cCC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--------FASGAEF--TDSEK----SGAARINEMFSIARR----NAP 263 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i--------~vs~s~~--~~~~~----~~~~~ir~lF~~A~~----~~P 263 (612)
+.|...||+||+|+||+.+|.++|..+-..-- .-+-+++ ....+ -+...+|++-+.+.. ...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 57789999999999999999999987633100 0001111 10011 134456666555543 223
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeC
Q 007214 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343 (612)
Q Consensus 264 ~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~ 343 (612)
.|++||++|.+. ....|.||..|+.-. .++++|..|+.++.|.|.+++ |+ ..+.|+
T Consensus 97 kv~ii~~ad~mt----------~~AaNaLLK~LEEPp-----------~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~ 152 (290)
T PRK05917 97 KIYIIHEADRMT----------LDAISAFLKVLEDPP-----------QHGVIILTSAKPQRLPPTIRS--RS-LSIHIP 152 (290)
T ss_pred eEEEEechhhcC----------HHHHHHHHHHhhcCC-----------CCeEEEEEeCChhhCcHHHHh--cc-eEEEcc
Confidence 699999999994 346799999998733 447888888889999999998 77 456666
Q ss_pred CC
Q 007214 344 LP 345 (612)
Q Consensus 344 ~P 345 (612)
++
T Consensus 153 ~~ 154 (290)
T PRK05917 153 ME 154 (290)
T ss_pred ch
Confidence 54
No 263
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.95 E-value=2.8e-05 Score=91.59 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=121.5
Q ss_pred cCCcccccceecCcc-cHHHHHHHHHHhC-CchhhhhcCCcc-Cc-eEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccc
Q 007214 164 SDTKSMYKEVVLGGD-VWDLLDELMIYMG-NPMQYYERGVQF-VR-GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e-~k~~L~elv~~l~-~p~~~~~~g~~~-p~-gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~ 239 (612)
++.+..-.++.|... ++...+.+.++=+ .+-.|...+... .. .+|++||||.|||+.+.++|.++|..++..+.++
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~ 392 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD 392 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence 445556678877754 3433333333311 111222222111 12 3699999999999999999999999999999887
Q ss_pred ccchhhh--------hHHHHHHHHH---HHhh-cCC-eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc
Q 007214 240 FTDSEKS--------GAARINEMFS---IARR-NAP-AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID 306 (612)
Q Consensus 240 ~~~~~~~--------~~~~ir~lF~---~A~~-~~P-~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~ 306 (612)
....... +...+...|. .... +.. -||++||+|.+.+ . +...-..+.++.....
T Consensus 393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~---dRg~v~~l~~l~~ks~--------- 459 (871)
T KOG1968|consen 393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E---DRGGVSKLSSLCKKSS--------- 459 (871)
T ss_pred cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h---hhhhHHHHHHHHHhcc---------
Confidence 6533111 1112333331 0000 112 3899999998864 1 1122233444444111
Q ss_pred cccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHH
Q 007214 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIR 385 (612)
Q Consensus 307 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~ 385 (612)
.-+|+++|..+......+. |-+..++|..|+.+.+..-+...+...... .+-.++++...+ ++||+
T Consensus 460 -------~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 460 -------RPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred -------CCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 3678888887765553333 545679999999998887777665433322 233467777665 67999
Q ss_pred HHHHHHHHH
Q 007214 386 NLVNESGIM 394 (612)
Q Consensus 386 ~lv~~A~~~ 394 (612)
+.++.-..+
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 888877666
No 264
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.92 E-value=4.5e-05 Score=82.51 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=56.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh---------------hHHHHHHHHHHHhhc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS---------------GAARINEMFSIARRN 261 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~---------------~~~~ir~lF~~A~~~ 261 (612)
|+.+..-++|+|+||+|||+|+..+|... +.+++++++.+-.+.... ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45666678999999999999999998654 467888887653322110 112245666777777
Q ss_pred CCeEEEEccchhhhcc
Q 007214 262 APAFVFVDEIDAIAGR 277 (612)
Q Consensus 262 ~P~ILfIDEiD~l~~~ 277 (612)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 265
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.92 E-value=4.2e-05 Score=84.75 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=56.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh---------------hHHHHHHHHHHHhhc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS---------------GAARINEMFSIARRN 261 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~---------------~~~~ir~lF~~A~~~ 261 (612)
|+.+..-++|+||||+|||+|+..+|... +.++++++..+..+.... ....+..+++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45666678999999999999999998754 678889887664332111 012245666677777
Q ss_pred CCeEEEEccchhhhc
Q 007214 262 APAFVFVDEIDAIAG 276 (612)
Q Consensus 262 ~P~ILfIDEiD~l~~ 276 (612)
.|.+|+||.+..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999999864
No 266
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.91 E-value=3.7e-05 Score=81.77 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=89.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC--eeEEecccccchhhhhH--------------------HHHHHHHHHHh
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGAEFTDSEKSGA--------------------ARINEMFSIAR 259 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~--~i~vs~s~~~~~~~~~~--------------------~~ir~lF~~A~ 259 (612)
.+|+|++|||.-|||||+|.-.+-..+--. =-.+...+|+-....-. .-+.-+-+...
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh
Confidence 469999999999999999999887543110 00111112221110000 00111111111
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC-CCCccccccCCCceeE
Q 007214 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR-PDELDLEFVRPGRIDR 338 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~-p~~LD~aLlrpgRFd~ 338 (612)
..-++|++||+... +-...-.++.|...|-. .+|+++||+|+ |+.|-.. -+.+
T Consensus 192 -~ea~lLCFDEfQVT-------DVADAmiL~rLf~~Lf~-------------~GvVlvATSNR~P~dLYkn-----GlQR 245 (467)
T KOG2383|consen 192 -EEAILLCFDEFQVT-------DVADAMILKRLFEHLFK-------------NGVVLVATSNRAPEDLYKN-----GLQR 245 (467)
T ss_pred -hhceeeeechhhhh-------hHHHHHHHHHHHHHHHh-------------CCeEEEEeCCCChHHHhhc-----chhh
Confidence 12379999999743 22334467777776643 35899999998 4444321 2223
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCC----CcH-HHHHHHHHHHHH
Q 007214 339 RLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG----FSG-ADIRNLVNESGI 393 (612)
Q Consensus 339 ~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G----~sg-adL~~lv~~A~~ 393 (612)
...+| -..+|+.++.-..+...+|....+. +.+ |.+ .|...++++--.
T Consensus 246 ~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~-~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 246 ENFIP------FIALLEERCKVIQLDSGVDYRRKAK-SAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred hhhhh------HHHHHHHhheEEecCCccchhhccC-CCCceeEecChhhHHHHHHHHHH
Confidence 33333 3578888888888888899884432 222 233 377777776653
No 267
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00047 Score=72.03 Aligned_cols=127 Identities=12% Similarity=0.113 Sum_probs=84.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC-------ee---------EEecccccc--hhh--hhHHHHHHHHHHHhh-
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FV---------FASGAEFTD--SEK--SGAARINEMFSIARR- 260 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------~i---------~vs~s~~~~--~~~--~~~~~ir~lF~~A~~- 260 (612)
+.+.++|++|| +||+++|+++|..+-.. .- .-+-+++.. ..+ .....+|++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 57789999996 68999999999865221 00 001111111 111 123457766665543
Q ss_pred ---cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCcee
Q 007214 261 ---NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337 (612)
Q Consensus 261 ---~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd 337 (612)
....|++||++|.+. ....|.||..++.-. .++++|.+|+.++.+-|.+++ |+
T Consensus 100 p~~~~~kV~II~~ad~m~----------~~AaNaLLKtLEEPp-----------~~t~~iL~t~~~~~lLpTI~S--Rc- 155 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH----------VNAANSLLKVIEEPQ-----------SEIYIFLLTNDENKVLPTIKS--RT- 155 (290)
T ss_pred cccCCcEEEEeehhhhcC----------HHHHHHHHHHhcCCC-----------CCeEEEEEECChhhCchHHHH--cc-
Confidence 233799999999984 346799999998733 346888888889999999998 88
Q ss_pred EEEEeCCCCHHHHHHHHH
Q 007214 338 RRLYIGLPDAKQRVQIFD 355 (612)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~ 355 (612)
..+.|+. +.+...+++.
T Consensus 156 q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 156 QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred eeeeCCC-cHHHHHHHHH
Confidence 6777865 5555555554
No 268
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00039 Score=71.26 Aligned_cols=120 Identities=10% Similarity=0.058 Sum_probs=79.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC-----e---------eEEecccccc--hh--hhhHHHHHHHHHHHhh---
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-----F---------VFASGAEFTD--SE--KSGAARINEMFSIARR--- 260 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~-----~---------i~vs~s~~~~--~~--~~~~~~ir~lF~~A~~--- 260 (612)
.+|..+|++||+|+||..+|.++|+.+-.. . ..-+-+++.- .. .-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999765221 0 0000111111 00 1123345555443321
Q ss_pred --cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeE
Q 007214 261 --NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR 338 (612)
Q Consensus 261 --~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~ 338 (612)
....|++|+++|.+. ....|.||..++.- +.++++|..|+.++.+.|.+++ |..
T Consensus 85 e~~~~KV~II~~ae~m~----------~~AaNaLLK~LEEP-----------p~~t~fiLit~~~~~lLpTI~S--RCq- 140 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------KQSANSLLKLIEEP-----------PKNTYGIFTTRNENNILNTILS--RCV- 140 (261)
T ss_pred hcCCCEEEEeccHhhhC----------HHHHHHHHHhhcCC-----------CCCeEEEEEECChHhCchHhhh--hee-
Confidence 235799999999984 34779999999873 3457888889999999999999 873
Q ss_pred EEEeCCC
Q 007214 339 RLYIGLP 345 (612)
Q Consensus 339 ~I~v~~P 345 (612)
.+.++.+
T Consensus 141 ~~~~~~~ 147 (261)
T PRK05818 141 QYVVLSK 147 (261)
T ss_pred eeecCCh
Confidence 4566665
No 269
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.86 E-value=2.3e-05 Score=75.18 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=24.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC---eeEEecccc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEF 240 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~---~i~vs~s~~ 240 (612)
..++.++|+|+||+|||++++++...+..+ ++.+++...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 356889999999999999999987655222 666666555
No 270
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.83 E-value=0.00011 Score=73.62 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=50.1
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch-hh---h--------------------hHHHHH
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS-EK---S--------------------GAARIN 252 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~-~~---~--------------------~~~~ir 252 (612)
|++...-++++||||+|||+++..+|.+. +.+++++++..+... .. . ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 55566678999999999999999998643 788888888732211 00 0 001112
Q ss_pred HHHHHHhhcCCeEEEEccchhhhc
Q 007214 253 EMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 253 ~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
.+....+ ..+.+|+||-+.++..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~ 121 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYR 121 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhH
Confidence 2222222 5789999999998864
No 271
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00031 Score=73.83 Aligned_cols=127 Identities=10% Similarity=0.131 Sum_probs=87.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC-----------C--eeEEecccccchhhhhHHHHHHHHHHHhh-----cCC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-----------P--FVFASGAEFTDSEKSGAARINEMFSIARR-----NAP 263 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~-----------~--~i~vs~s~~~~~~~~~~~~ir~lF~~A~~-----~~P 263 (612)
+.+...||+|+.|.||+.+++++|+.+-+ | +..++.. + .......++.+.+.... ...
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g-~~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---D-KDLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---C-CcCCHHHHHHHHHHhccCCcccCCc
Confidence 45678999999999999999999887621 2 2222200 0 11122345555554422 245
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeC
Q 007214 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343 (612)
Q Consensus 264 ~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~ 343 (612)
.|++||++|.+. ....|.||..|+.... .+++|.+|+.++.+-+.+++ |+ ..+++.
T Consensus 92 KvvII~~~e~m~----------~~a~NaLLK~LEEPp~-----------~t~~il~~~~~~kll~TI~S--Rc-~~~~f~ 147 (299)
T PRK07132 92 KILIIKNIEKTS----------NSLLNALLKTIEEPPK-----------DTYFLLTTKNINKVLPTIVS--RC-QVFNVK 147 (299)
T ss_pred eEEEEecccccC----------HHHHHHHHHHhhCCCC-----------CeEEEEEeCChHhChHHHHh--Ce-EEEECC
Confidence 799999998873 3467889999987443 35667677778888888888 77 679999
Q ss_pred CCCHHHHHHHHHH
Q 007214 344 LPDAKQRVQIFDV 356 (612)
Q Consensus 344 ~Pd~~eR~~Il~~ 356 (612)
+|+.++..+.+..
T Consensus 148 ~l~~~~l~~~l~~ 160 (299)
T PRK07132 148 EPDQQKILAKLLS 160 (299)
T ss_pred CCCHHHHHHHHHH
Confidence 9998887777654
No 272
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.76 E-value=0.00028 Score=76.66 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH----cCCCeeEEecccccchhhhhHHHHHHHHH
Q 007214 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEFTDSEKSGAARINEMFS 256 (612)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~~i~vs~s~~~~~~~~~~~~ir~lF~ 256 (612)
..|..++.|+.+. .++++.||||||||+++.+++.. .| -.++.+.+.... .. ..+.
T Consensus 197 ~~L~rl~~fve~~-----------~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L---~~---~~lg 256 (449)
T TIGR02688 197 LLLARLLPLVEPN-----------YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI---ST---RQIG 256 (449)
T ss_pred HHHHhhHHHHhcC-----------CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH---HH---HHHh
Confidence 3455555565543 58999999999999999998765 24 112222222111 10 1111
Q ss_pred HHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 007214 257 IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (612)
Q Consensus 257 ~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (612)
. -....+|+|||+..+.-. .....++.|-..|....-..+........++++++-+|.
T Consensus 257 ~--v~~~DlLI~DEvgylp~~------~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 257 L--VGRWDVVAFDEVATLKFA------KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred h--hccCCEEEEEcCCCCcCC------chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1 134579999999876321 122344555555654443334334444556777776654
No 273
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.74 E-value=2.2e-05 Score=70.50 Aligned_cols=31 Identities=39% Similarity=0.862 Sum_probs=27.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEec
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASG 237 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~ 237 (612)
|+|.||||+||||+|+.+|+.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
No 274
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.74 E-value=0.0003 Score=70.10 Aligned_cols=39 Identities=38% Similarity=0.503 Sum_probs=31.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
|++...-++++||||+|||+++..+|.+. |.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 55566669999999999999999998654 6678788764
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.74 E-value=6.1e-05 Score=75.66 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGL 230 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~ 230 (612)
..++|+|+||||||++|.++|.+++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999998763
No 276
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.73 E-value=0.00017 Score=76.39 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=52.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh-----h------------hhHHHHHHHHHHHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----K------------SGAARINEMFSIAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~-----~------------~~~~~ir~lF~~A~ 259 (612)
|++..+.++++||||||||+||-.++.+. |.+++++++.+..... + .....+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666778999999999999988775543 7778888765532210 0 11122333333345
Q ss_pred hcCCeEEEEccchhhhcc
Q 007214 260 RNAPAFVFVDEIDAIAGR 277 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~~ 277 (612)
...+.+|+||-+.++.++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999999754
No 277
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.72 E-value=7.4e-05 Score=81.33 Aligned_cols=228 Identities=16% Similarity=0.191 Sum_probs=120.8
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcC--CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHH
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERG--VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAA 249 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g--~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~ 249 (612)
+|.|.+++|+.|--+.- -.+.+-..-| ++..-+|+|.|.||+-||.|.+.+.+-+-.-.+...-.+ +..|.+++
T Consensus 343 EIyGheDVKKaLLLlLV--Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS--SGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV--GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS--SGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhh--CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC--Cccccchh
Confidence 56788888887654432 1222212122 344567999999999999999999876544443321110 11222222
Q ss_pred HHHHHH-----------HHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 250 RINEMF-----------SIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 250 ~ir~lF-----------~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
.+++-. -.| ...|-+|||+|.+... .+..+....++-.-.....|+. .+.+...-|+|
T Consensus 419 VmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e~-------DRtAIHEVMEQQTISIaKAGI~-TtLNAR~sILa 487 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDES-------DRTAIHEVMEQQTISIAKAGIN-TTLNARTSILA 487 (721)
T ss_pred hhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhhh-------hhHHHHHHHHhhhhhhhhhccc-cchhhhHHhhh
Confidence 222111 011 1257889999998521 1111111111100000001110 11223457888
Q ss_pred ecCCCC-------------CccccccCCCceeEEE-EeCCCCHHHHHHHHHH----HhcCCCCCc---cCCHH------H
Q 007214 319 ATNRPD-------------ELDLEFVRPGRIDRRL-YIGLPDAKQRVQIFDV----HSAGKQLAE---DVNFE------E 371 (612)
Q Consensus 319 aTN~p~-------------~LD~aLlrpgRFd~~I-~v~~Pd~~eR~~Il~~----~l~~~~l~~---dvdl~------~ 371 (612)
|.|... .|+.||++ |||... -.+.||.+.-..+-++ |....+-.. .++.. .
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~ 565 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS 565 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH
Confidence 888643 58999999 999744 3477877665555443 222111110 11111 1
Q ss_pred HHHh----------------------------cC-CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 372 LVFR----------------------------TV-GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 372 La~~----------------------------t~-G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
+|+. .. -.|++.|-.+++-+..+|..+-...|..+|+.+|+.-.-
T Consensus 566 ~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 566 LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 1111 11 125777778888888788777777888888888886543
No 278
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.69 E-value=0.00049 Score=69.69 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=48.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchh-------h------------------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-------K------------------------ 245 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~-------~------------------------ 245 (612)
|++...-+++.||||||||+++..++.. -|.+.++++..+-.... +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 3555667999999999999998665443 26677777754321110 0
Q ss_pred -hhHHHHHHHHHHHhhcCCeEEEEccchhhh
Q 007214 246 -SGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (612)
Q Consensus 246 -~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~ 275 (612)
.....+..+........|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 001223344455555678999999998875
No 279
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.69 E-value=5.2e-05 Score=74.56 Aligned_cols=122 Identities=15% Similarity=0.190 Sum_probs=59.8
Q ss_pred EEEEcCCCChHHHHHHHH-HH---HcCCCeeEEecccccch--hh---hhHH-------------HHHHHHHHHhhcCCe
Q 007214 207 VLLSGPPGTGKTLFARTL-AK---ESGLPFVFASGAEFTDS--EK---SGAA-------------RINEMFSIARRNAPA 264 (612)
Q Consensus 207 vLL~GPPGTGKT~LAral-A~---e~g~~~i~vs~s~~~~~--~~---~~~~-------------~ir~lF~~A~~~~P~ 264 (612)
.+++|.||+|||+.|-.. .. ..|.+++. +...+.-. .. .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987655 43 23777665 54422211 00 0000 011222222222568
Q ss_pred EEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCC
Q 007214 265 FVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (612)
Q Consensus 265 ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (612)
+|+|||++.+.+.+........ ..+..+.... ..++-|+.+|-.+..+|+.+++ +.+.++.+..
T Consensus 82 liviDEa~~~~~~r~~~~~~~~----~~~~~l~~hR----------h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVP----EIIEFLAQHR----------HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHHHGGGGCC----------CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE
T ss_pred EEEEECChhhcCCCccccccch----HHHHHHHHhC----------cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEe
Confidence 9999999999876544222222 2223332221 1246788889999999999987 8888887765
Q ss_pred C
Q 007214 345 P 345 (612)
Q Consensus 345 P 345 (612)
+
T Consensus 146 ~ 146 (193)
T PF05707_consen 146 L 146 (193)
T ss_dssp -
T ss_pred e
Confidence 5
No 280
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.68 E-value=0.00028 Score=84.49 Aligned_cols=186 Identities=15% Similarity=0.190 Sum_probs=105.2
Q ss_pred CccCceEEEEcCCCChHHHH-HHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHh---h-------cC----CeE
Q 007214 201 VQFVRGVLLSGPPGTGKTLF-ARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIAR---R-------NA----PAF 265 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~L-AralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~---~-------~~----P~I 265 (612)
....|+++++||||+|||++ .-++-.+.-..++.++.+--.... ..++.+-+... . .. --|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~----s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTP----SKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCH----HHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 44578999999999999996 567777777888887765433221 11222211111 0 01 148
Q ss_pred EEEccchhhhccCCCCChhHHHH-HHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCcee---EEEE
Q 007214 266 VFVDEIDAIAGRHARKDPRRRAT-FEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID---RRLY 341 (612)
Q Consensus 266 LfIDEiD~l~~~~~~~~~~~~~~-l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd---~~I~ 341 (612)
||.|||. + ++.....++..-. +.+|+ +-+|+......... .-.++++.+++|.+.... ..--|-||- ..+.
T Consensus 1567 LFcDeIn-L-p~~~~y~~~~vI~FlR~l~-e~QGfw~s~~~~wv-TI~~i~l~Gacnp~td~g-Rv~~~eRf~r~~v~vf 1641 (3164)
T COG5245 1567 LFCDEIN-L-PYGFEYYPPTVIVFLRPLV-ERQGFWSSIAVSWV-TICGIILYGACNPGTDEG-RVKYYERFIRKPVFVF 1641 (3164)
T ss_pred EEeeccC-C-ccccccCCCceEEeeHHHH-HhcccccchhhhHh-hhcceEEEccCCCCCCcc-cCccHHHHhcCceEEE
Confidence 9999998 4 4332222221111 12222 33556554432221 124689999999876432 011122442 3688
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCc-c------------CCH--------HHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 342 IGLPDAKQRVQIFDVHSAGKQLAE-D------------VNF--------EELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~~~~l~~-d------------vdl--------~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
+..|.......|...++.+..+-. + +.+ ..-.+...||+|+||...++.....|
T Consensus 1642 ~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ya 1716 (3164)
T COG5245 1642 CCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYA 1716 (3164)
T ss_pred ecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHH
Confidence 899999999999887765432211 1 111 11122246899999999998544444
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.65 E-value=0.00028 Score=71.27 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=32.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~ 239 (612)
|++....++++||||||||+++.+++.+ .|.+.++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 5677778999999999999999999654 377777777644
No 282
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.64 E-value=0.00019 Score=72.05 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=41.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccc--c--------cch-hhhhHHHHHHHHHHHh--hcCCeEEEEc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE--F--------TDS-EKSGAARINEMFSIAR--RNAPAFVFVD 269 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~--~--------~~~-~~~~~~~ir~lF~~A~--~~~P~ILfID 269 (612)
.|.-+|+||+||+|||++|+.++.. ..++..+.+. + ... .......+.+.+..+. ...+..|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3667999999999999999999732 2233333221 0 000 0011122333333332 2346799999
Q ss_pred cchhhhc
Q 007214 270 EIDAIAG 276 (612)
Q Consensus 270 EiD~l~~ 276 (612)
.++.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999853
No 283
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.62 E-value=5.3e-05 Score=72.07 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=29.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
++..++|+||||||||++|+++|+.+|.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 567899999999999999999999999988854
No 284
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.61 E-value=0.0023 Score=67.42 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=24.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
..|..+.|+|+-|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999977663
No 285
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.60 E-value=0.00027 Score=78.48 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=54.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhh---------------HHHHHHHHHHHhhc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG---------------AARINEMFSIARRN 261 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~---------------~~~ir~lF~~A~~~ 261 (612)
|+.+..-+||.|+||+|||+|+..+|... +.+++++++.+-......- ...+..+...+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45666678999999999999999997654 5678888876543221110 11245566666677
Q ss_pred CCeEEEEccchhhhc
Q 007214 262 APAFVFVDEIDAIAG 276 (612)
Q Consensus 262 ~P~ILfIDEiD~l~~ 276 (612)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999854
No 286
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00046 Score=69.42 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=59.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEecccccch--hh-----------------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS--EK----------------------- 245 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~~~~~--~~----------------------- 245 (612)
|++...-+.|+||||||||+++..+|... +...++++..+-... ..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56666778999999999999999997543 256777876552110 00
Q ss_pred ---hhHHHHHHHHHHHhhc-CCeEEEEccchhhhccCCCCC---hhHHHHHHHHHHHhcCC
Q 007214 246 ---SGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKD---PRRRATFEALIAQLDGD 299 (612)
Q Consensus 246 ---~~~~~ir~lF~~A~~~-~P~ILfIDEiD~l~~~~~~~~---~~~~~~l~~LL~~ld~~ 299 (612)
.....+..+-...... .+.+|+||-+.++......+. .++.+.+..++..|..+
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 0001112222233344 789999999998853211111 34445566666666544
No 287
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.57 E-value=0.00048 Score=68.84 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=59.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---C------CCeeEEecccccch--hhh----------------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---G------LPFVFASGAEFTDS--EKS---------------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g------~~~i~vs~s~~~~~--~~~---------------------- 246 (612)
|++...-+.|+||||+|||+++..+|... + ..+++++..+-... ...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56666778999999999999999998653 3 56677776542111 000
Q ss_pred hHHHHHHHHHHH----hhcCCeEEEEccchhhhccCCCCC---hhHHHHHHHHHHHhcCCc
Q 007214 247 GAARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARKD---PRRRATFEALIAQLDGDK 300 (612)
Q Consensus 247 ~~~~ir~lF~~A----~~~~P~ILfIDEiD~l~~~~~~~~---~~~~~~l~~LL~~ld~~~ 300 (612)
....+...+... ....+++|+||-+..+......+. .++.+.+.+++..|..+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 011122222222 245678999999998864321222 233455666666665543
No 288
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=0.00016 Score=69.62 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=30.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s 238 (612)
-|+++||||+||||+|+.++..++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999887743
No 289
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.56 E-value=0.00063 Score=68.24 Aligned_cols=98 Identities=24% Similarity=0.295 Sum_probs=59.2
Q ss_pred cCCccCceEEEEcCCCChHHHHHHHHHHH---c-CCCeeEEecccccch--------------------------hh---
Q 007214 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKE---S-GLPFVFASGAEFTDS--------------------------EK--- 245 (612)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e---~-g~~~i~vs~s~~~~~--------------------------~~--- 245 (612)
-|++....+|+.||||||||+++..++.+ . |-+.++++..+-.+. ..
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 36677788999999999999999987543 2 888888885542110 00
Q ss_pred -----hhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 246 -----SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 246 -----~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
....-+..+.+..+...|.+++||-+..+. .. .........+..+...+..
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~-~~~~~~r~~l~~l~~~l~~ 149 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY-DDPEELRRFLRALIKFLKS 149 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS-SSGGGHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc-CCHHHHHHHHHHHHHHHHH
Confidence 001112333344455677899999999992 21 2223344556666666643
No 290
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.55 E-value=0.005 Score=67.43 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=71.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR 285 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~ 285 (612)
-++|+||.+||||++++.+.+...-.+++++..+............+. +..+.....+.||||||+.+- .
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~-~~~~~~~~~~yifLDEIq~v~--------~- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRA-YIELKEREKSYIFLDEIQNVP--------D- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHH-HHHhhccCCceEEEecccCch--------h-
Confidence 799999999999999988887765556777666655443222222222 222222245799999999773 1
Q ss_pred HHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHH
Q 007214 286 RATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (612)
Q Consensus 286 ~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~ 352 (612)
+...+-...|.... .|++.+++...-....+-.=|||. ..+.+.+.+..+...
T Consensus 109 --W~~~lk~l~d~~~~-----------~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 --WERALKYLYDRGNL-----------DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --HHHHHHHHHccccc-----------eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 22333333333221 144444333222222222235795 678888889988865
No 291
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.54 E-value=0.00027 Score=85.28 Aligned_cols=146 Identities=23% Similarity=0.253 Sum_probs=92.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch---hhh-------hHHHHH-HHHHHHhhcCCeEEEEccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---EKS-------GAARIN-EMFSIARRNAPAFVFVDEI 271 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~---~~~-------~~~~ir-~lF~~A~~~~P~ILfIDEi 271 (612)
..+++||-|.||+|||+|..|+|++.|-.++.++.++-.+- +|. |.-+.+ .-|-.|.+.. .-+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 45789999999999999999999999999999998874432 111 111111 2233333333 46788999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC------CccccccCCCceeEEEEeCCC
Q 007214 272 DAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD------ELDLEFVRPGRIDRRLYIGLP 345 (612)
Q Consensus 272 D~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~------~LD~aLlrpgRFd~~I~v~~P 345 (612)
.... ...-.-+|++|..-....-..--..|....++.|+||-|.-+ .||..++. || .+|.++..
T Consensus 1621 NLaS-------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~d~l 1690 (4600)
T COG5271 1621 NLAS-------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKMDGL 1690 (4600)
T ss_pred hhhH-------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEeccc
Confidence 6432 122233444443221111111011255567789999998743 58888988 99 57788888
Q ss_pred CHHHHHHHHHHHhc
Q 007214 346 DAKQRVQIFDVHSA 359 (612)
Q Consensus 346 d~~eR~~Il~~~l~ 359 (612)
+.+....|......
T Consensus 1691 t~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1691 TTDDITHIANKMYP 1704 (4600)
T ss_pred ccchHHHHHHhhCC
Confidence 88887777765544
No 292
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.53 E-value=0.00051 Score=72.82 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=51.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccch-h----h------------hhHHHHHHHHHHHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-E----K------------SGAARINEMFSIAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~-~----~------------~~~~~ir~lF~~A~ 259 (612)
|++..+-++++||||||||+||-.++.+ .|.+.++++...-... . + .....+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 4566667899999999999999988644 4778888876542211 0 0 01112222223345
Q ss_pred hcCCeEEEEccchhhhcc
Q 007214 260 RNAPAFVFVDEIDAIAGR 277 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~~ 277 (612)
...+.+|+||-+-++.++
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999999754
No 293
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.53 E-value=0.00079 Score=66.62 Aligned_cols=120 Identities=25% Similarity=0.335 Sum_probs=66.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA 279 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~ 279 (612)
|.+....++|.|+-|+|||++.+.|+.+ ++.-+...... . ..... ...+ -|+.|||++.+..+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~--k---d~~~~----l~~~--~iveldEl~~~~k~-- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD--K---DFLEQ----LQGK--WIVELDELDGLSKK-- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC--c---HHHHH----HHHh--HheeHHHHhhcchh--
Confidence 5666677899999999999999999765 22111111111 1 11111 1111 48999999987421
Q ss_pred CCChhHHHHHHHHHHHhc-CCcccCCcccccccccEEEEEecCCCCCc-cccccCCCceeEEEEeCC
Q 007214 280 RKDPRRRATFEALIAQLD-GDKERTGIDRFSLRQAVIFICATNRPDEL-DLEFVRPGRIDRRLYIGL 344 (612)
Q Consensus 280 ~~~~~~~~~l~~LL~~ld-~~~~~~~~~~~~~~~~ViVIaaTN~p~~L-D~aLlrpgRFd~~I~v~~ 344 (612)
....+..+++.-. .....-+......+...++|+|||..+-| |+.=-| || ..|.+..
T Consensus 111 -----~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 111 -----DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred -----hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1234444544322 21111111123334567899999998755 444445 77 4555544
No 294
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.50 E-value=0.00065 Score=70.18 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=60.7
Q ss_pred ceecCcccHHH-HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---C--CCee--EEecccccch
Q 007214 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---G--LPFV--FASGAEFTDS 243 (612)
Q Consensus 172 dvvG~~e~k~~-L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g--~~~i--~vs~s~~~~~ 243 (612)
.+.|+.-+++. +..+..++.+|. -+.|--+=|||+|||||.+.++.+|+.+ | -|++ ++.-..|...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 35677777764 455566777772 2345556689999999999999999865 2 2333 2222233322
Q ss_pred h-h--hhHHHHHHHHHHHhhcCCeEEEEccchhhh
Q 007214 244 E-K--SGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (612)
Q Consensus 244 ~-~--~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~ 275 (612)
. . .-.+-.+.+-..+..++.+|.++||.|.+-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 1 1 111122334444556777899999999984
No 295
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.47 E-value=0.00043 Score=77.18 Aligned_cols=34 Identities=35% Similarity=0.349 Sum_probs=27.6
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
++..-+|||+|.|||||+.+.|.+++-....++.
T Consensus 479 vRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 479 VRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred eccceeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 3445569999999999999999999877666554
No 296
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.43 E-value=0.001 Score=65.80 Aligned_cols=68 Identities=25% Similarity=0.420 Sum_probs=43.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----cCCCe-------------eEEecccccc----hhhhhHHHHHHHHHHHhhcC
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE-----SGLPF-------------VFASGAEFTD----SEKSGAARINEMFSIARRNA 262 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e-----~g~~~-------------i~vs~s~~~~----~~~~~~~~ir~lF~~A~~~~ 262 (612)
+.++|.||+|+|||++.|.++.. .|.++ ..++..+-.. .......++..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 57899999999999999999853 34432 1111111000 11112245677777776568
Q ss_pred CeEEEEccch
Q 007214 263 PAFVFVDEID 272 (612)
Q Consensus 263 P~ILfIDEiD 272 (612)
|.++++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 9999999974
No 297
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.41 E-value=0.0015 Score=63.17 Aligned_cols=90 Identities=28% Similarity=0.367 Sum_probs=55.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHH--------------------HHHHHHHHhhcCCeE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR--------------------INEMFSIARRNAPAF 265 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~--------------------ir~lF~~A~~~~P~I 265 (612)
-+|+.||||+|||++|..++.+.+.+++++........ ....+ +..++... ...+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~--e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~ 79 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD--EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRC 79 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH--HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCE
Confidence 48999999999999999999998888887775543222 11111 33333221 133568
Q ss_pred EEEccchhhhccCCCCC--hhHHHHHHHHHHHhcC
Q 007214 266 VFVDEIDAIAGRHARKD--PRRRATFEALIAQLDG 298 (612)
Q Consensus 266 LfIDEiD~l~~~~~~~~--~~~~~~l~~LL~~ld~ 298 (612)
++||-+..+.......+ ......+..++..+..
T Consensus 80 VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 80 VLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc
Confidence 99999988864322111 2223345566666654
No 298
>PRK07261 topology modulation protein; Provisional
Probab=97.39 E-value=0.00034 Score=67.50 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=29.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
|+++|+||+||||||+.++..++.|++..+.-.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 8899999999999999999999999887764433
No 299
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0021 Score=75.66 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=120.4
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEEeccc
Q 007214 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAE 239 (612)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~vs~s~ 239 (612)
++-++|. ..++++.+++.|... ..++-+|.|.||+|||.++.-+|+.. +..++.++...
T Consensus 185 ldPvigr--~deeirRvi~iL~Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 185 LDPVIGR--HDEEIRRVIEILSRK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCCccCC--chHHHHHHHHHHhcc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 4566665 224566666655443 23578999999999999999998754 33467777665
Q ss_pred ccch---hhhhHHHHHHHHHHHh-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 240 FTDS---EKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 240 ~~~~---~~~~~~~ir~lF~~A~-~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
+... .+....+++.+.+.+. .....||||||++.+.+.... .......| +|..+-.. .++-
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~~~d~~n-lLkp~L~r------------g~l~ 318 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--YGAIDAAN-LLKPLLAR------------GGLW 318 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--chHHHHHH-hhHHHHhc------------CCeE
Confidence 5443 3567788999999887 456689999999999754322 11222222 33333221 2277
Q ss_pred EEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCC------C--CccCCHHHHHH--hcCCCc
Q 007214 316 FICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ------L--AEDVNFEELVF--RTVGFS 380 (612)
Q Consensus 316 VIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~------l--~~dvdl~~La~--~t~G~s 380 (612)
+|+||..-. .-||++-| ||+ .+.++.|+.+.-..||........ . ...+....++. .+.-|-
T Consensus 319 ~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~l 395 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFL 395 (898)
T ss_pred EEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcC
Confidence 888775322 34899999 996 567888988776667664433211 1 11111222221 234445
Q ss_pred HHHHHHHHHHHHHHH
Q 007214 381 GADIRNLVNESGIMS 395 (612)
Q Consensus 381 gadL~~lv~~A~~~A 395 (612)
+.-...++++|+...
T Consensus 396 pd~aidl~dEa~a~~ 410 (898)
T KOG1051|consen 396 PDCAIDLEDEAAALV 410 (898)
T ss_pred chhcccHHHHHHHHH
Confidence 555667777776544
No 300
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.35 E-value=0.00077 Score=69.88 Aligned_cols=67 Identities=27% Similarity=0.410 Sum_probs=42.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEeccccc---------ch------h--h------hhHHHHHHHHHHHh
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFT---------DS------E--K------SGAARINEMFSIAR 259 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s~~~---------~~------~--~------~~~~~ir~lF~~A~ 259 (612)
+++++.||||+|||||.+++++...- .-+.+++..+. .. . + ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999987632 11112211111 00 0 0 01112335666677
Q ss_pred hcCCeEEEEccc
Q 007214 260 RNAPAFVFVDEI 271 (612)
Q Consensus 260 ~~~P~ILfIDEi 271 (612)
...|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.35 E-value=0.00039 Score=64.06 Aligned_cols=31 Identities=48% Similarity=0.831 Sum_probs=25.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEeccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~ 239 (612)
|+++||||+||||+|+.+++.++. ..++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHH
Confidence 789999999999999999999884 3444333
No 302
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.34 E-value=0.0019 Score=65.57 Aligned_cols=40 Identities=38% Similarity=0.594 Sum_probs=32.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~ 239 (612)
|++....+|++||||||||+++-.++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6777788999999999999999877543 377787777554
No 303
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0012 Score=62.61 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.+.-++++||||+|||+++..+|..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45679999999999999999999765
No 304
>PRK13947 shikimate kinase; Provisional
Probab=97.32 E-value=0.0002 Score=68.36 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.|+|.|+||||||++++.+|+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999987654
No 305
>PF14516 AAA_35: AAA-like domain
Probab=97.31 E-value=0.028 Score=60.11 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=91.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh----hh----------------------------hH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE----KS----------------------------GA 248 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~----~~----------------------------~~ 248 (612)
..-+.++||..+|||++...+.+.+ |...+++++..+.... .. ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4568999999999999998886544 7888888877753210 00 00
Q ss_pred HHHHHHHHHH---hhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec-CCCC
Q 007214 249 ARINEMFSIA---RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT-NRPD 324 (612)
Q Consensus 249 ~~ir~lF~~A---~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT-N~p~ 324 (612)
......|+.. ....|-||+|||+|.+.... .-.... -.+|...-...... .....+.+|.+. ..+.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~----~~~~dF-~~~LR~~~~~~~~~-----~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP----QIADDF-FGLLRSWYEQRKNN-----PIWQKLRLILAGSTEDY 180 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc----chHHHH-HHHHHHHHHhcccC-----cccceEEEEEecCcccc
Confidence 1122333321 22568999999999997421 111112 22222222111100 011122333222 2222
Q ss_pred CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHH
Q 007214 325 ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVN 389 (612)
Q Consensus 325 ~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~ 389 (612)
.....=.+|=.+...|.++.-+.++-..+++.|-.. ..... ++.|-..|.|. |.=+..+|.
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgGh-P~Lv~~~~~ 241 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGGH-PYLVQKACY 241 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCCC-HHHHHHHHH
Confidence 211111233223456777888899999998877432 33332 78888888885 333444443
No 306
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.31 E-value=0.00045 Score=70.93 Aligned_cols=75 Identities=25% Similarity=0.436 Sum_probs=52.4
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHH------HcCCCeeEEecccccchhhhh--HHHHHHHHHHHhh--------cCCe
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAK------ESGLPFVFASGAEFTDSEKSG--AARINEMFSIARR--------NAPA 264 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~------e~g~~~i~vs~s~~~~~~~~~--~~~ir~lF~~A~~--------~~P~ 264 (612)
++....+||.||.|.||++||+.+.. ++.-+|+.|+|..+......+ -..++..|.-|+. ....
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 44455699999999999999999853 457799999999887543211 1223444433322 2246
Q ss_pred EEEEccchhhh
Q 007214 265 FVFVDEIDAIA 275 (612)
Q Consensus 265 ILfIDEiD~l~ 275 (612)
+||+|||..++
T Consensus 285 mlfldeigelg 295 (531)
T COG4650 285 MLFLDEIGELG 295 (531)
T ss_pred eEehHhhhhcC
Confidence 89999999885
No 307
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.30 E-value=0.0051 Score=65.59 Aligned_cols=137 Identities=20% Similarity=0.255 Sum_probs=79.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch----------------hh---hh-HH---HHHHHHHH-
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS----------------EK---SG-AA---RINEMFSI- 257 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~----------------~~---~~-~~---~ir~lF~~- 257 (612)
..|..+.|+|-.|||||.+++++-+.++.|.+.++|-+.... .+ .+ .. .+-.+|.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 467789999999999999999999999999999987764211 00 00 11 12334444
Q ss_pred -Hhhc--CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCC
Q 007214 258 -ARRN--APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (612)
Q Consensus 258 -A~~~--~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpg 334 (612)
+..+ .-..|++|.+|.+-. -....++.++..-.-.... .-+++..++-.+.. -+.+-|
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD-------~~a~ll~~l~~L~el~~~~---------~i~iils~~~~e~~---y~~n~g 168 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRD-------MDAILLQCLFRLYELLNEP---------TIVIILSAPSCEKQ---YLINTG 168 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhc-------cchHHHHHHHHHHHHhCCC---------ceEEEEeccccHHH---hhcccC
Confidence 2222 245799999999941 1122334443322111111 11222222222221 111223
Q ss_pred cee-EEEEeCCCCHHHHHHHHHHH
Q 007214 335 RID-RRLYIGLPDAKQRVQIFDVH 357 (612)
Q Consensus 335 RFd-~~I~v~~Pd~~eR~~Il~~~ 357 (612)
-++ ..+++|.|+.++...|+..-
T Consensus 169 ~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 169 TLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CCCceEEecCCCCHHHHHHHHhcC
Confidence 333 47899999999999998743
No 308
>PRK03839 putative kinase; Provisional
Probab=97.30 E-value=0.00019 Score=69.32 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
-|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987653
No 309
>PRK09354 recA recombinase A; Provisional
Probab=97.28 E-value=0.0013 Score=70.25 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=51.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccch-h----h------------hhHHHHHHHHHHHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-E----K------------SGAARINEMFSIAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~-~----~------------~~~~~ir~lF~~A~ 259 (612)
|++..+-++++||||||||+||-.++.+ .|...++++...-... . + .....+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4556667899999999999999887643 4777888876652221 0 0 01111222223345
Q ss_pred hcCCeEEEEccchhhhcc
Q 007214 260 RNAPAFVFVDEIDAIAGR 277 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~~ 277 (612)
...+.+|+||=+-++.++
T Consensus 136 s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 136 SGAVDLIVVDSVAALVPK 153 (349)
T ss_pred cCCCCEEEEeChhhhcch
Confidence 567899999999998753
No 310
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.27 E-value=0.00023 Score=66.45 Aligned_cols=31 Identities=48% Similarity=0.671 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.|+|+||||+|||++++.+|..+|.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999987554
No 311
>PTZ00202 tuzin; Provisional
Probab=97.27 E-value=0.025 Score=62.06 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=46.7
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccc
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~ 239 (612)
+..-.+.+|.+.....|..++.-. ....|+-+.|.||+|||||++++.++..++.+.++++...
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 344567788886656665555421 2234567899999999999999999999998877777553
No 312
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.26 E-value=0.00041 Score=63.35 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=38.0
Q ss_pred cceecCcccHHH-HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 171 KEVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 171 ~dvvG~~e~k~~-L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+.|.|+.-+++. ++.+..++.++ .-+.|--+-|+||||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 367888877664 45555677665 12345556699999999999999999874
No 313
>PRK00625 shikimate kinase; Provisional
Probab=97.26 E-value=0.00025 Score=68.63 Aligned_cols=31 Identities=42% Similarity=0.638 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.|+|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 314
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.26 E-value=0.0017 Score=65.65 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=31.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~ 239 (612)
|+++..-++|.|+||+|||+++..+|... |.+++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 66666779999999999999998886543 78888887544
No 315
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.25 E-value=0.0019 Score=67.75 Aligned_cols=136 Identities=20% Similarity=0.324 Sum_probs=80.7
Q ss_pred CceEEEEcCCCChHHHHHHHH---HHHcCCCeeEEecccccchh----------------------hhhHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTL---AKESGLPFVFASGAEFTDSE----------------------KSGAARINEMFSIA 258 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAral---A~e~g~~~i~vs~s~~~~~~----------------------~~~~~~ir~lF~~A 258 (612)
...|++.||.|+|||++.... +++.|-+|+.+....+.... +.....+..+....
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 457999999999999876544 34678788776654433221 11122233333333
Q ss_pred hh-----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCC---ccccc
Q 007214 259 RR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE---LDLEF 330 (612)
Q Consensus 259 ~~-----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~---LD~aL 330 (612)
+. ..|.|.++||||.+++. .+...+..++..-.. .+.++.||+.|.+.+. |...+
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h------~rQtllYnlfDisqs-----------~r~Piciig~Ttrld~lE~LEKRV 191 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPH------SRQTLLYNLFDISQS-----------ARAPICIIGVTTRLDILELLEKRV 191 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccc------hhhHHHHHHHHHHhh-----------cCCCeEEEEeeccccHHHHHHHHH
Confidence 32 22456666799988643 122223333332221 1346899999888765 45666
Q ss_pred cCCCceeEE-EEeCCC-CHHHHHHHHHHHh
Q 007214 331 VRPGRIDRR-LYIGLP-DAKQRVQIFDVHS 358 (612)
Q Consensus 331 lrpgRFd~~-I~v~~P-d~~eR~~Il~~~l 358 (612)
.+ ||... |++.+| ...+-.++++..+
T Consensus 192 KS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 192 KS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 67 99654 666543 5788888888766
No 316
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00023 Score=66.41 Aligned_cols=32 Identities=41% Similarity=0.771 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.+||++|-||||||+++.++|...|.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 36999999999999999999999999987663
No 317
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.00077 Score=64.14 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
|+-++|+|+||+||||+|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 56789999999999999999999987666666655443
No 318
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.20 E-value=0.00029 Score=68.05 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
|+++||||+||||+|+.+|..+|.+ .++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence 6899999999999999999999865 45555544
No 319
>PRK04296 thymidine kinase; Provisional
Probab=97.20 E-value=0.0017 Score=63.63 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=41.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc----c----ccchhhhh-----HHHHHHHHHHHh--hcCCeEEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA----E----FTDSEKSG-----AARINEMFSIAR--RNAPAFVF 267 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s----~----~~~~~~~~-----~~~ir~lF~~A~--~~~P~ILf 267 (612)
-.+++||||+|||+++..++.++ |..++.+... . +.+..+.. ......++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887654 6665555331 1 11111110 012334444432 34568999
Q ss_pred Eccchhh
Q 007214 268 VDEIDAI 274 (612)
Q Consensus 268 IDEiD~l 274 (612)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999765
No 320
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.20 E-value=0.00035 Score=78.51 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=43.1
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-CCCeeEEec
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASG 237 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g~~~i~vs~ 237 (612)
.-|+|+.|++++++. ++++++..- ..++ ...+.++|.||||+|||+||+++|+-+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ier---iv~~l~~Aa--~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQ---IVSYFRHAA--QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHH---HHHHHHHHH--HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 458999999866554 455543221 1111 233578899999999999999999865 346666654
No 321
>PRK05973 replicative DNA helicase; Provisional
Probab=97.19 E-value=0.0036 Score=63.63 Aligned_cols=40 Identities=38% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
|.++..-+++.|+||+|||+++-.+|.+. |.+.++++..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 56666679999999999999988886543 77877777554
No 322
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.18 E-value=0.0021 Score=66.23 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=30.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s 238 (612)
|.....-++|.||||+|||+++..+|..+ |.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 44556678999999999999999886543 7777777753
No 323
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.18 E-value=0.0015 Score=67.03 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGL 230 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (612)
..-+++.||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445999999999999999999987654
No 324
>PLN02200 adenylate kinase family protein
Probab=97.18 E-value=0.00047 Score=70.04 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=32.6
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
.+.|.-+++.||||+|||++|+.+|+.+|++ .++++++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 4566779999999999999999999999865 466666553
No 325
>PRK13949 shikimate kinase; Provisional
Probab=97.17 E-value=0.00034 Score=67.37 Aligned_cols=32 Identities=38% Similarity=0.606 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
+.|+|.||||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988765
No 326
>PHA02624 large T antigen; Provisional
Probab=97.17 E-value=0.00083 Score=75.85 Aligned_cols=130 Identities=16% Similarity=0.071 Sum_probs=71.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA 279 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~ 279 (612)
|++..+.++|+||||||||+++.++++.+|-..+.++++.-...+ ...-....-+.+||++-.-.....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~F-----------wL~pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNF-----------ELGCAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHH-----------HhhhhhhceEEEeeeccccccccc
Confidence 556667899999999999999999999996667777755432221 111111124778888753221000
Q ss_pred C-CChhHHHHHHHHHHHhcCC-cccCCccc---ccccccEEEEEecCCCCCccccccCCCceeEEEEeCC
Q 007214 280 R-KDPRRRATFEALIAQLDGD-KERTGIDR---FSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (612)
Q Consensus 280 ~-~~~~~~~~l~~LL~~ld~~-~~~~~~~~---~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (612)
. .....-..+..|-+.|||. .-+-...+ ..... -..|.|||. ..||..+.- ||..++.|..
T Consensus 496 ~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~-PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 496 DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIF-PPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cCCcccccchhhHHHhhcCCCCccccchhccCchhccC-CCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 0 0000011234556667775 11110000 00111 135667775 567777776 8877777743
No 327
>PHA02774 E1; Provisional
Probab=97.17 E-value=0.0025 Score=71.79 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=28.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCee-EEe
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFV-FAS 236 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i-~vs 236 (612)
+...+++|+||||||||++|-++++.++-..+ +++
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 33458999999999999999999999865443 355
No 328
>PRK14532 adenylate kinase; Provisional
Probab=97.17 E-value=0.00035 Score=68.00 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
.++|.||||+||||+|+.+|+.+|.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999986654 55555443
No 329
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.16 E-value=0.00061 Score=67.29 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=41.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCC----CeeEEecc-cccc--------h--hhhhHHHHHHHHHHHhhcCCeEEEEcc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGL----PFVFASGA-EFTD--------S--EKSGAARINEMFSIARRNAPAFVFVDE 270 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~----~~i~vs~s-~~~~--------~--~~~~~~~ir~lF~~A~~~~P~ILfIDE 270 (612)
-+++.||+|+||||+++++++.... .++.+... ++.. . .+.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 22222111 1110 0 011112355566667777899999999
Q ss_pred c
Q 007214 271 I 271 (612)
Q Consensus 271 i 271 (612)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 330
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.16 E-value=0.0022 Score=61.33 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.9
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
.+.-.+++.||+|||||+|.|++|.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 3445699999999999999999997
No 331
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.16 E-value=0.004 Score=64.19 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=31.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s 238 (612)
|++....++++||||||||+++-.+|.+ .|-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 6667777999999999999999988653 36677777754
No 332
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.16 E-value=0.0043 Score=62.13 Aligned_cols=98 Identities=22% Similarity=0.247 Sum_probs=58.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchhhh--------------------------h---
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS--------------------------G--- 247 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~~~--------------------------~--- 247 (612)
|++....+++.|+||+|||+++..+|.+ .|.+.++++..+-.+.... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 5666677999999999999999988754 3778877776542211000 0
Q ss_pred HHHH-HHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 248 AARI-NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 248 ~~~i-r~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
...+ ..+.....+..++.++||-+..+..- ..........+..++..+..
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-~~~~~~~r~~l~~l~~~lk~ 142 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-FDDDAERRTELFRFYSSLRE 142 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-cCCHHHHHHHHHHHHHHHHh
Confidence 0011 11222234456788999999887221 12233344556677776653
No 333
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.15 E-value=0.00057 Score=70.53 Aligned_cols=98 Identities=20% Similarity=0.321 Sum_probs=58.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC---eeEEe-cccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFAS-GAEF 240 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---~i~vs-~s~~ 240 (612)
....+++++.-.+...+.+.++.... .+....+++.||+|+|||++++++..+..-. ++.+. ..++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 44567888766555554554444332 1234679999999999999999999877433 33332 1111
Q ss_pred c-------chh-hhhHHHHHHHHHHHhhcCCeEEEEccch
Q 007214 241 T-------DSE-KSGAARINEMFSIARRNAPAFVFVDEID 272 (612)
Q Consensus 241 ~-------~~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD 272 (612)
. ... ........+++..+.+..|.+|+++|+-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1 000 0122347788888888899999999995
No 334
>PRK14531 adenylate kinase; Provisional
Probab=97.15 E-value=0.00042 Score=67.40 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
+-++++||||+||||+++.+|..+|++.++ +.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 459999999999999999999999877654 44544
No 335
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.14 E-value=0.0018 Score=61.84 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=54.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEecccccch---------h-----hhhHHHHHHHHHHHhhcCCeE
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTDS---------E-----KSGAARINEMFSIARRNAPAF 265 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s~~~~~---------~-----~~~~~~ir~lF~~A~~~~P~I 265 (612)
++...+.|.||+|+|||+|.+.+++.... --+.+++.++... . ..+..+-+-.+..|-...|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 44556899999999999999999986421 1122322221110 0 112234555666677788999
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 266 LfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
+++||--.= -+......+..++.++
T Consensus 104 lllDEP~~~------LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 104 LILDEPTAA------LTPAEVERLFKVIRRL 128 (163)
T ss_pred EEEECCCcC------CCHHHHHHHHHHHHHH
Confidence 999997532 2344455566666655
No 336
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0018 Score=69.94 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=59.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----C-CCeeEEecccccchh-----------h------hhHHHHHHHHHHHhh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES----G-LPFVFASGAEFTDSE-----------K------SGAARINEMFSIARR 260 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g-~~~i~vs~s~~~~~~-----------~------~~~~~ir~lF~~A~~ 260 (612)
....++|.||+|+||||++..+|..+ | ..+..+++..+.-.. + .....+...+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 45678999999999999999998753 3 345555544432100 0 0001122222222
Q ss_pred cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCcccc
Q 007214 261 NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLE 329 (612)
Q Consensus 261 ~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~a 329 (612)
....+|+||...... ....+...+..+...... ...++|+.+|+..+.++..
T Consensus 214 ~~~DlVLIDTaG~~~---------~d~~l~e~La~L~~~~~~--------~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ---------RDRTVSDQIAMLHGADTP--------VQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred cCCCEEEEcCCCCCc---------ccHHHHHHHHHHhccCCC--------CeEEEEecCccChHHHHHH
Confidence 345789999884221 122344555555432211 1236777788777666543
No 337
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.12 E-value=0.00041 Score=64.05 Aligned_cols=30 Identities=40% Similarity=0.800 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
|.+.|+||||||++|+.+|..+|.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988776
No 338
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0008 Score=64.75 Aligned_cols=32 Identities=38% Similarity=0.588 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
+.+.|.|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56999999999999999999999999998554
No 339
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.10 E-value=0.0044 Score=59.78 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=54.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh-hh-----------------hHHHHHHHHHHHhhcCCeEEEE
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KS-----------------GAARINEMFSIARRNAPAFVFV 268 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~-~~-----------------~~~~ir~lF~~A~~~~P~ILfI 268 (612)
+|+.|+||+|||++|..++.+.+.+.+++....-.+.. .. ....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998878788877655432221 10 011223333221 14678999
Q ss_pred ccchhhhccCCCC-C----hhHHHHHHHHHHHhcC
Q 007214 269 DEIDAIAGRHARK-D----PRRRATFEALIAQLDG 298 (612)
Q Consensus 269 DEiD~l~~~~~~~-~----~~~~~~l~~LL~~ld~ 298 (612)
|-+..+...-... + ......+..|+..+..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc
Confidence 9998886543221 1 1123345556666654
No 340
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.09 E-value=0.00043 Score=66.72 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
+-++|.||||+|||++|++++.+++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 468999999999999999999998888776644433
No 341
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.09 E-value=0.0021 Score=60.06 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=50.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC--eeEEeccc---ccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGAE---FTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~--~i~vs~s~---~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
+....+.|.||+|+|||+|++++++..... -+.++... +.... .+..+-+-.+..|-...|.++++||-.+=.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G~~~rv~laral~~~p~illlDEP~~~L- 101 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGGEKMRLALAKLLLENPNLLLLDEPTNHL- 101 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCC-
Confidence 345568899999999999999999865211 11111110 00101 112233444455666789999999976332
Q ss_pred cCCCCChhHHHHHHHHHHHh
Q 007214 277 RHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 277 ~~~~~~~~~~~~l~~LL~~l 296 (612)
+......+..++..+
T Consensus 102 -----D~~~~~~l~~~l~~~ 116 (144)
T cd03221 102 -----DLESIEALEEALKEY 116 (144)
T ss_pred -----CHHHHHHHHHHHHHc
Confidence 333334444555543
No 342
>PRK06217 hypothetical protein; Validated
Probab=97.08 E-value=0.00047 Score=67.00 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.|+|.|+||+||||+++++++.+|.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999977654
No 343
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.07 E-value=0.00066 Score=67.00 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=45.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchh-----hhhHHHHHHHHHHHh---------hcCCeEEE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-----KSGAARINEMFSIAR---------RNAPAFVF 267 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~-----~~~~~~ir~lF~~A~---------~~~P~ILf 267 (612)
+..+|.||||||||++++.++.. .|..++.+....-.... +.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 46888999999999999998653 36676666544322111 001111222222111 12237999
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 268 IDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
|||+-.+.. ..+..++.....
T Consensus 99 VDEasmv~~----------~~~~~ll~~~~~ 119 (196)
T PF13604_consen 99 VDEASMVDS----------RQLARLLRLAKK 119 (196)
T ss_dssp ESSGGG-BH----------HHHHHHHHHS-T
T ss_pred EecccccCH----------HHHHHHHHHHHh
Confidence 999987742 245556655543
No 344
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.06 E-value=0.00047 Score=67.03 Aligned_cols=29 Identities=52% Similarity=0.852 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
|+|+||||+|||++|+.+|..+|.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999988776543
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.06 E-value=0.0024 Score=62.00 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=63.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC-------------CeeEEe---------cccc-cch-h--hhhHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-------------PFVFAS---------GAEF-TDS-E--KSGAARINEMF 255 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~-------------~~i~vs---------~s~~-~~~-~--~~~~~~ir~lF 255 (612)
++..-+.|.||.|+|||||.+++....|- ++.++. ...+ ... . ..+..+-+-.+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 34455889999999999999999743322 122211 1000 000 0 11223445555
Q ss_pred HHHhhcC--CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCC
Q 007214 256 SIARRNA--PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (612)
Q Consensus 256 ~~A~~~~--P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (612)
..|-... |.++++||--+-. +......+.+++..+.. . +..||.+|..++.+ +
T Consensus 99 aral~~~~~p~llLlDEPt~~L------D~~~~~~l~~~l~~~~~---~----------g~tvIivSH~~~~~-----~- 153 (176)
T cd03238 99 ASELFSEPPGTLFILDEPSTGL------HQQDINQLLEVIKGLID---L----------GNTVILIEHNLDVL-----S- 153 (176)
T ss_pred HHHHhhCCCCCEEEEeCCcccC------CHHHHHHHHHHHHHHHh---C----------CCEEEEEeCCHHHH-----H-
Confidence 6666677 8999999975332 33344444455544421 1 13566667665432 2
Q ss_pred CceeEEEEeCC
Q 007214 334 GRIDRRLYIGL 344 (612)
Q Consensus 334 gRFd~~I~v~~ 344 (612)
..|+.+.+..
T Consensus 154 -~~d~i~~l~~ 163 (176)
T cd03238 154 -SADWIIDFGP 163 (176)
T ss_pred -hCCEEEEECC
Confidence 4566666643
No 346
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.06 E-value=0.0089 Score=71.84 Aligned_cols=151 Identities=19% Similarity=0.283 Sum_probs=82.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch---h-hh---------------h------------HHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---E-KS---------------G------------AARIN 252 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~---~-~~---------------~------------~~~ir 252 (612)
.+-++++||+|.|||+++...+...+ ++.-++...-... + .. . ...+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35689999999999999999987776 6655554321110 0 00 0 01122
Q ss_pred HHHHHHhh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccc-cc
Q 007214 253 EMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDL-EF 330 (612)
Q Consensus 253 ~lF~~A~~-~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~-aL 330 (612)
.++..... ..|.+|+|||++.+. ++.....+..|+..+. .++.+|.++.....++- .+
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~------~~~~~~~l~~l~~~~~--------------~~~~lv~~sR~~~~~~~~~l 170 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT------NPEIHEAMRFFLRHQP--------------ENLTLVVLSRNLPPLGIANL 170 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC------ChHHHHHHHHHHHhCC--------------CCeEEEEEeCCCCCCchHhH
Confidence 33333322 679999999999873 2222334444554331 12344445533111211 11
Q ss_pred cCCCceeEEEEeC----CCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCc
Q 007214 331 VRPGRIDRRLYIG----LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFS 380 (612)
Q Consensus 331 lrpgRFd~~I~v~----~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~s 380 (612)
.. -+..+.+. ..+.++-.+++...+.. .+ +..+...+...|.|..
T Consensus 171 ~~---~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 171 RV---RDQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWA 219 (903)
T ss_pred Hh---cCcceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChH
Confidence 11 12234454 56888888888755432 22 2334677888888864
No 347
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.06 E-value=0.0012 Score=64.36 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=44.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEecc-ccc-------ch-----h--hhhHHHHHHHHHHHhhcCCeE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGA-EFT-------DS-----E--KSGAARINEMFSIARRNAPAF 265 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s-~~~-------~~-----~--~~~~~~ir~lF~~A~~~~P~I 265 (612)
....+++.||+|+|||++++++++.... ..+.+... ++. .. . ........+++..+.+..|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 3467999999999999999999986531 22222111 110 00 0 011123567777777788999
Q ss_pred EEEccch
Q 007214 266 VFVDEID 272 (612)
Q Consensus 266 LfIDEiD 272 (612)
++++|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999994
No 348
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.06 E-value=0.0013 Score=71.13 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHcC
Q 007214 207 VLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g 229 (612)
.+++||||+|||+|++.+++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 89999999999999999988653
No 349
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.05 E-value=0.0011 Score=70.41 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=46.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEe-ccccc-------chhhhhHHHHHHHHHHHhhcCCeEEEEcc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFAS-GAEFT-------DSEKSGAARINEMFSIARRNAPAFVFVDE 270 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs-~s~~~-------~~~~~~~~~ir~lF~~A~~~~P~ILfIDE 270 (612)
.+++|++|++|+|||+++++++.+. +..++.+. ..++. .......-...++++.+.+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4679999999999999999998875 22333332 11211 00011112366788888889999999999
Q ss_pred ch
Q 007214 271 ID 272 (612)
Q Consensus 271 iD 272 (612)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 83
No 350
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.04 E-value=0.0033 Score=66.70 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=31.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~ 239 (612)
|++...-++++||||||||+++-.+|-.. +...++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56667778999999999999999998653 34678887665
No 351
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.04 E-value=0.0011 Score=69.74 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=46.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC-----CCeeEEecc-cc-------cch-hhhhHHHHHHHHHHHhhcCCeEEEEc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA-EF-------TDS-EKSGAARINEMFSIARRNAPAFVFVD 269 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g-----~~~i~vs~s-~~-------~~~-~~~~~~~ir~lF~~A~~~~P~ILfID 269 (612)
.++++++||+|+|||++++++++... ..++.+.-. ++ ... ...+...+.++++.+.+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998752 223332211 11 110 01111157788888888999999999
Q ss_pred cch
Q 007214 270 EID 272 (612)
Q Consensus 270 EiD 272 (612)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 984
No 352
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.03 E-value=0.00067 Score=68.69 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=28.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|.-++|.||||+||||+|+.+|+.+|++++++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 345599999999999999999999999877655
No 353
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.03 E-value=0.00053 Score=64.06 Aligned_cols=33 Identities=30% Similarity=0.734 Sum_probs=26.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
++|+|+||+|||++|+.++..++.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999877654 444443
No 354
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.03 E-value=0.0048 Score=61.74 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (612)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47799999999999999999973
No 355
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.02 E-value=0.0034 Score=66.50 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=57.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---------cCCCeeEEecccc-cch--------hhh---------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---------SGLPFVFASGAEF-TDS--------EKS--------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---------~g~~~i~vs~s~~-~~~--------~~~--------------- 246 (612)
|++...-+.++||||+|||+|+..+|-. .+...++++...- ... .+.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 4566667899999999999999987732 2446777775551 100 000
Q ss_pred -h---HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC---ChhHHHHHHHHHHHhcCC
Q 007214 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK---DPRRRATFEALIAQLDGD 299 (612)
Q Consensus 247 -~---~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~---~~~~~~~l~~LL~~ld~~ 299 (612)
. ...+..+-.......+.+|+||-+-++......+ -.++.+.+++++..|...
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~l 231 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKI 231 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHH
Confidence 0 0112222223334568899999999886532111 123334456666555544
No 356
>PRK06547 hypothetical protein; Provisional
Probab=97.02 E-value=0.001 Score=64.32 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=29.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.+.-|++.|++|+|||++++.+++.++++++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 5667899999999999999999999998877554
No 357
>PRK13948 shikimate kinase; Provisional
Probab=97.01 E-value=0.00074 Score=65.93 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=31.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
+++..|+|.|++|+|||++++.+|+.+|.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35688999999999999999999999999998554
No 358
>PRK06696 uridine kinase; Validated
Probab=97.01 E-value=0.0012 Score=66.43 Aligned_cols=40 Identities=38% Similarity=0.469 Sum_probs=34.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~ 242 (612)
.|.-|.+.|+||+||||+|+.|+..+ |.+++.++..+|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 46678999999999999999999988 77888888777754
No 359
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.00 E-value=0.0055 Score=59.16 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=52.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEeccc--------------------ccc--------hhhhhHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE--------------------FTD--------SEKSGAARI 251 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s~--------------------~~~--------~~~~~~~~i 251 (612)
++...+.|.||+|+|||+|++.+++.... --+.+++.. +.. ....+-.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~q 105 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQ 105 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHH
Confidence 34556899999999999999999986421 011111111 000 001112334
Q ss_pred HHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 252 NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 252 r~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
+-.+..|-...|.++++||--+-. +......+.+++..+
T Consensus 106 rv~laral~~~p~~lllDEP~~~L------D~~~~~~l~~~l~~~ 144 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGL------DPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccC------CHHHHHHHHHHHHHH
Confidence 455566667889999999976432 334444555666555
No 360
>PRK14530 adenylate kinase; Provisional
Probab=96.98 E-value=0.00066 Score=67.73 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|+|.||||+||||+++.+|+.+|.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999876644
No 361
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.98 E-value=0.0042 Score=65.55 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~ 239 (612)
|++...-++++||||+|||+++-.+|-.+ +-..++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666778999999999999999998653 23788888666
No 362
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0069 Score=58.13 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++..-+.|.||+|+|||+|.+.+++..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 445568999999999999999999864
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0035 Score=59.10 Aligned_cols=88 Identities=25% Similarity=0.312 Sum_probs=51.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC--eeEEecccccch--------h-----hhhHHHHHHHHHHHhhcCCeEEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGAEFTDS--------E-----KSGAARINEMFSIARRNAPAFVF 267 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~--~i~vs~s~~~~~--------~-----~~~~~~ir~lF~~A~~~~P~ILf 267 (612)
+..-+.|.||+|+|||+|++++++..... -+.+++...... . ..+-.+-+-.+..+-...|.+++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34568999999999999999999865321 123333222110 0 11122334445555556789999
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 268 VDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 268 IDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
+||...=. +......+..++..+
T Consensus 104 lDEp~~~l------D~~~~~~l~~~l~~~ 126 (157)
T cd00267 104 LDEPTSGL------DPASRERLLELLREL 126 (157)
T ss_pred EeCCCcCC------CHHHHHHHHHHHHHH
Confidence 99986432 333344555555554
No 364
>PRK04328 hypothetical protein; Provisional
Probab=96.97 E-value=0.0071 Score=61.93 Aligned_cols=39 Identities=38% Similarity=0.581 Sum_probs=29.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s 238 (612)
|++....+|++||||||||+|+..++.+ .|-+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 5666777999999999999998877543 36677777653
No 365
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.95 E-value=0.00058 Score=64.76 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986654 44444
No 366
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.94 E-value=0.0091 Score=65.62 Aligned_cols=28 Identities=36% Similarity=0.396 Sum_probs=22.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGL 230 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (612)
..-+|||.|.|||.|+.|.|-+-+-.-+
T Consensus 363 GDINVLLLGDPgtAKSQlLKFvEkvsPI 390 (729)
T KOG0481|consen 363 GDINVLLLGDPGTAKSQLLKFVEKVSPI 390 (729)
T ss_pred cceeEEEecCCchhHHHHHHHHHhcCce
Confidence 3456999999999999999998665433
No 367
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.94 E-value=0.0045 Score=72.50 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=49.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHH---HcCCCeeEEecccccch-----hh------------hhHHHHHHHHHHHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTDS-----EK------------SGAARINEMFSIAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~---e~g~~~i~vs~s~~~~~-----~~------------~~~~~ir~lF~~A~ 259 (612)
|++..+.++++||||||||+|+..++. ..|-+.++++..+-... .+ ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 456667789999999999999976643 34677777776552220 00 01111222222234
Q ss_pred hcCCeEEEEccchhhhc
Q 007214 260 RNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~ 276 (612)
...+.+|+||-+.++..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 56789999999999985
No 368
>PRK13764 ATPase; Provisional
Probab=96.94 E-value=0.0013 Score=75.06 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=41.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC---CCeeEEe-ccccc-----chhhhhHHHHHHHHHHHhhcCCeEEEEccch
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG---LPFVFAS-GAEFT-----DSEKSGAARINEMFSIARRNAPAFVFVDEID 272 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g---~~~i~vs-~s~~~-----~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD 272 (612)
..+++|++||||+||||++++++..+. ..+..+. ..++. ..+.............+-...|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCCCEEEECCCC
Confidence 357899999999999999999998764 2222221 11111 1110000012223333345679999999984
No 369
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.00069 Score=64.16 Aligned_cols=28 Identities=50% Similarity=0.755 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
|-+.|||||||||+|+-+|+.+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999885
No 370
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.93 E-value=0.022 Score=56.35 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCe
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~ 232 (612)
+.-+++.|+||+|||++|+.+|.++|.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999988765
No 371
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.93 E-value=0.04 Score=58.36 Aligned_cols=127 Identities=14% Similarity=0.270 Sum_probs=68.6
Q ss_pred HHHHHHHHhh--c-CCeEEEEccchhhhccCCCC-------ChhHHHHHHHHHHHhcCCcccCCcccccccccEEE--EE
Q 007214 251 INEMFSIARR--N-APAFVFVDEIDAIAGRHARK-------DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF--IC 318 (612)
Q Consensus 251 ir~lF~~A~~--~-~P~ILfIDEiD~l~~~~~~~-------~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV--Ia 318 (612)
+..++++.+. . -|.++-||++.++.....-. +...-.....++..+.+...- .++.+| ++
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~--------~nG~~v~~l~ 213 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDF--------KNGAVVTALA 213 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCcccc--------CCCeEEEEEe
Confidence 4455554443 2 48899999999998653211 222334445555554432221 223444 55
Q ss_pred ecCC---CC--CccccccCCCc------ee-------------EEEEeCCCCHHHHHHHHHHHhcCCCCCccCC----HH
Q 007214 319 ATNR---PD--ELDLEFVRPGR------ID-------------RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN----FE 370 (612)
Q Consensus 319 aTN~---p~--~LD~aLlrpgR------Fd-------------~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd----l~ 370 (612)
+|.. +. .++.++....- |. ..|+++..+.+|-..+++.+....-+....+ .+
T Consensus 214 ~t~~~~~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e 293 (309)
T PF10236_consen 214 ATSVSNAPKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLE 293 (309)
T ss_pred ccccccccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHH
Confidence 5533 22 45555543111 11 1688999999999999998876555443221 23
Q ss_pred HHHHhcCCCcHHHHHH
Q 007214 371 ELVFRTVGFSGADIRN 386 (612)
Q Consensus 371 ~La~~t~G~sgadL~~ 386 (612)
.+.. +.|.+++++..
T Consensus 294 ~~~~-~s~GNp~el~k 308 (309)
T PF10236_consen 294 KLFL-SSNGNPRELEK 308 (309)
T ss_pred HHHH-hcCCCHHHhcc
Confidence 3332 33456776643
No 372
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.93 E-value=0.0014 Score=69.65 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEe-ccccc-------chhhhhHHHHHHHHHHHhhcCCeEEEEcc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFAS-GAEFT-------DSEKSGAARINEMFSIARRNAPAFVFVDE 270 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs-~s~~~-------~~~~~~~~~ir~lF~~A~~~~P~ILfIDE 270 (612)
.+++++.||+|+|||+++++++.+. ...++.+. ..++. .......-.+.++++.+-+..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4689999999999999999999763 12222221 11111 00001112367888888899999999999
Q ss_pred ch
Q 007214 271 ID 272 (612)
Q Consensus 271 iD 272 (612)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 84
No 373
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.93 E-value=0.00087 Score=64.09 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
+.++|.|+||+|||++++.+|+.+|.|++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 4589999999999999999999999998754
No 374
>PRK13946 shikimate kinase; Provisional
Probab=96.92 E-value=0.00079 Score=65.60 Aligned_cols=34 Identities=44% Similarity=0.558 Sum_probs=30.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.++.|+|.|+||+|||++++.+|+.+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4567999999999999999999999999988655
No 375
>PRK08233 hypothetical protein; Provisional
Probab=96.90 E-value=0.004 Score=59.72 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC-CCeeEEeccc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGAE 239 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g-~~~i~vs~s~ 239 (612)
.-|.+.|+||+||||+|+.++..++ .+++..+...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~ 39 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYD 39 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEE
Confidence 4577889999999999999999885 4455554443
No 376
>PRK14528 adenylate kinase; Provisional
Probab=96.90 E-value=0.0009 Score=65.41 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
+.+++.||||+|||++++.+|+.+|.+.+++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887654
No 377
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.89 E-value=0.00098 Score=64.33 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=30.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEec
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG 237 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~ 237 (612)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999876653
No 378
>PRK13695 putative NTPase; Provisional
Probab=96.89 E-value=0.01 Score=57.05 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-++|.|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 379
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.88 E-value=0.013 Score=56.14 Aligned_cols=89 Identities=26% Similarity=0.348 Sum_probs=51.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC-----------CeeEEecc-cccc------------hhhhhHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-----------PFVFASGA-EFTD------------SEKSGAARINEMFSI 257 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~-----------~~i~vs~s-~~~~------------~~~~~~~~ir~lF~~ 257 (612)
.+..-+.|.||+|+|||+|++.+++.... .+.++.-. .+.. ....+-.+-+-.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 34556899999999999999999986421 11111111 0100 001122344555566
Q ss_pred HhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 258 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 258 A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
|-...|.++++||-.+-. +......+.+++..+
T Consensus 105 al~~~p~~lllDEPt~~L------D~~~~~~l~~~l~~~ 137 (166)
T cd03223 105 LLLHKPKFVFLDEATSAL------DEESEDRLYQLLKEL 137 (166)
T ss_pred HHHcCCCEEEEECCcccc------CHHHHHHHHHHHHHh
Confidence 667789999999976432 333444455555543
No 380
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.88 E-value=0.0012 Score=69.84 Aligned_cols=35 Identities=37% Similarity=0.527 Sum_probs=31.3
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
..++..|.|+|+||||||++++.+|..+|.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 35677899999999999999999999999999943
No 381
>PTZ00035 Rad51 protein; Provisional
Probab=96.86 E-value=0.0065 Score=65.08 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=57.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEecccc-cch-h-------hh---------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEF-TDS-E-------KS--------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~~-~~~-~-------~~--------------- 246 (612)
|++...-+.|+||||+|||+++..+|... +...++++...- ... . +.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 56666678899999999999999997533 335667765542 100 0 00
Q ss_pred ----hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCC
Q 007214 247 ----GAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 247 ----~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~---~~~~~~~~l~~LL~~ld~~ 299 (612)
....+..+........+.+|+||=|-++...... ...++.+.+.+++..|...
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~l 253 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKL 253 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHH
Confidence 0011222222223456789999999998643211 1123344566666666543
No 382
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.86 E-value=0.0053 Score=65.81 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=57.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEeccc-ccch--------hhh---------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE-FTDS--------EKS--------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~-~~~~--------~~~--------------- 246 (612)
|++...-..|+||||||||+|+..+|-.. +...++++... |... .+.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45566668899999999999999886322 24677777644 1110 000
Q ss_pred h----HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC---ChhHHHHHHHHHHHhcCC
Q 007214 247 G----AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK---DPRRRATFEALIAQLDGD 299 (612)
Q Consensus 247 ~----~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~---~~~~~~~l~~LL~~ld~~ 299 (612)
. ...+..+-.......+.+|+||-+-++......+ -.++.+.+.+++..|...
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~l 261 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKI 261 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHH
Confidence 0 0112222223334568899999999886532111 123445566666655443
No 383
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=96.85 E-value=0.0011 Score=58.12 Aligned_cols=67 Identities=24% Similarity=0.402 Sum_probs=36.6
Q ss_pred CCCcChHHHHHhhccCCccEEEEEcCeeE----------EEEEEecCce--eEEEEeCCCC----hhHHHHHHhCCCeee
Q 007214 35 RPKLPYTYFLEKLDSSEVAAVVFTEDLKR----------LYVTMKEGFP--LEYVVDIPLD----PYLFETIASSGAEVD 98 (612)
Q Consensus 35 ~~~~~y~~f~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~----~~~~~~l~~~~~~~~ 98 (612)
.++++||+|+++|++|+|++|.+.++... +....+++.. ..+....+.+ +.|.+.+.++|+++.
T Consensus 27 ~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~v~~~ 106 (110)
T PF06480_consen 27 TKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYTTFYTPSIPSVDSFDEFLIEALVEKGVKYE 106 (110)
T ss_dssp SEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT--EEEE-S-HHHHHHHHHHHHHHTT--TT
T ss_pred CcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccEEEEEcCCCCCHHHHHHHHHHHHHCCCccc
Confidence 46799999999999999999999988644 1222223321 2233344433 446677777888766
Q ss_pred eec
Q 007214 99 LLQ 101 (612)
Q Consensus 99 ~~~ 101 (612)
..+
T Consensus 107 ~~~ 109 (110)
T PF06480_consen 107 SVP 109 (110)
T ss_dssp T--
T ss_pred eec
Confidence 543
No 384
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.85 E-value=0.0036 Score=58.91 Aligned_cols=34 Identities=32% Similarity=0.602 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
++++|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999987 767777765444
No 385
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.85 E-value=0.0024 Score=68.57 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=43.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC----CeeEEec-cccc--------ch--hhhhHHHHHHHHHHHhhcCCeEEEEc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGL----PFVFASG-AEFT--------DS--EKSGAARINEMFSIARRNAPAFVFVD 269 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~----~~i~vs~-s~~~--------~~--~~~~~~~ir~lF~~A~~~~P~ILfID 269 (612)
..++++||+|+||||+++++.+...- .++.+.- .++. .. .+.....+...++.+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 45889999999999999999886642 2333211 1111 00 11111235566677777899999999
Q ss_pred cch
Q 007214 270 EID 272 (612)
Q Consensus 270 EiD 272 (612)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
No 386
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.84 E-value=0.0022 Score=57.13 Aligned_cols=24 Identities=50% Similarity=0.595 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++++++||+|+|||+.+-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887655
No 387
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.84 E-value=0.0035 Score=61.76 Aligned_cols=42 Identities=31% Similarity=0.487 Sum_probs=33.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc-CCCeeEEecccccch
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFTDS 243 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~-g~~~i~vs~s~~~~~ 243 (612)
..|.-+++.|+||+|||++++.+..++ +-.++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 568889999999999999999999888 778899998887654
No 388
>PRK14527 adenylate kinase; Provisional
Probab=96.83 E-value=0.001 Score=65.04 Aligned_cols=33 Identities=39% Similarity=0.527 Sum_probs=28.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|.-++++||||+|||++|+.+|.++|.+.++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 456799999999999999999999998776543
No 389
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.82 E-value=0.001 Score=66.18 Aligned_cols=29 Identities=41% Similarity=0.802 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
|++.||||+|||++|+.+|..+|++.+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998776653
No 390
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0099 Score=60.31 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
-|-|.||+|||||||.+.+|+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999973
No 391
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.80 E-value=0.0011 Score=63.91 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
-+++.||||+||||+++.+|+++|.+.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 57899999999999999999998866543
No 392
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0011 Score=64.39 Aligned_cols=34 Identities=35% Similarity=0.661 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.|++.||||+||||+|+.+|+. .++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999998 555566644443
No 393
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.80 E-value=0.0094 Score=65.90 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=31.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
..|..++++|+||+|||+++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 457889999999999999999998755 566666666544
No 394
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.80 E-value=0.0072 Score=67.90 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=54.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh-----------------------------h
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS-----------------------------G 247 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~-----------------------------~ 247 (612)
|+.....+|+.||||||||+|+-.++.+. |-+.++++..+-.+.... .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56666779999999999999999887644 667888876663221100 0
Q ss_pred HHHHHHHHHHHhhcCCeEEEEccchhhhc
Q 007214 248 AARINEMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 248 ~~~ir~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22345556666677889999999998853
No 395
>PRK02496 adk adenylate kinase; Provisional
Probab=96.80 E-value=0.001 Score=64.48 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
-+++.||||+|||++++.+|..+|.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 388999999999999999999998776544
No 396
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.0019 Score=64.59 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=45.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc--C------CCeeEEeccc-ccch-hhh-------------hHHHHHHHHHHHh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES--G------LPFVFASGAE-FTDS-EKS-------------GAARINEMFSIAR 259 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~--g------~~~i~vs~s~-~~~~-~~~-------------~~~~ir~lF~~A~ 259 (612)
...+.|+.|||||||||+.|-+|+-+ | ..+..++-++ +... .+. ..-+-..+....+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 34568999999999999999998754 2 2344444322 2211 010 0112345566677
Q ss_pred hcCCeEEEEccchh
Q 007214 260 RNAPAFVFVDEIDA 273 (612)
Q Consensus 260 ~~~P~ILfIDEiD~ 273 (612)
.+.|-|+++|||..
T Consensus 216 sm~PEViIvDEIGt 229 (308)
T COG3854 216 SMSPEVIIVDEIGT 229 (308)
T ss_pred hcCCcEEEEecccc
Confidence 88999999999953
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.78 E-value=0.013 Score=57.92 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=25.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
|+-++|.||+|+||||.+-.+|..+ +..+-.+++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 6779999999999999988887654 4454444433
No 398
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.77 E-value=0.0046 Score=67.17 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
.-+++.||||+|||++++.+++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4499999999999999999998753
No 399
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.77 E-value=0.0057 Score=68.70 Aligned_cols=40 Identities=40% Similarity=0.535 Sum_probs=32.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~~i~vs~s~ 239 (612)
|++..+.+|+.||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 5677788999999999999999988432 367888887654
No 400
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.75 E-value=0.0064 Score=59.11 Aligned_cols=71 Identities=24% Similarity=0.139 Sum_probs=43.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC--eeEEecccc---cch-hhhhHHHHHHHHHHHhhcCCeEEEEccchh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGAEF---TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~--~i~vs~s~~---~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~ 273 (612)
...-+.|.||.|+|||||++.+++..... -+.+++..+ ... ...+..+-+-.+..|-...|.++++||--+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 34568899999999999999999854211 122222111 111 122233445555666667899999999753
No 401
>PRK14974 cell division protein FtsY; Provisional
Probab=96.75 E-value=0.014 Score=62.43 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=27.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
.|.-++|.||||+||||++..+|..+ |..+..+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 46789999999999999888887654 5556555544
No 402
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.75 E-value=0.0012 Score=65.75 Aligned_cols=33 Identities=33% Similarity=0.692 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
|+++||||+|||++++.+|..+|++.++ ..++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 8999999999999999999999876654 44443
No 403
>PRK04040 adenylate kinase; Provisional
Probab=96.74 E-value=0.0014 Score=64.34 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc--CCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES--GLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~--g~~~i 233 (612)
|+-++++|+||||||++++.++.++ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5678999999999999999999998 55543
No 404
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.74 E-value=0.011 Score=56.92 Aligned_cols=88 Identities=26% Similarity=0.295 Sum_probs=51.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC--eeEEeccccc----------------c------hh----hhhHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGAEFT----------------D------SE----KSGAARINEM 254 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~--~i~vs~s~~~----------------~------~~----~~~~~~ir~l 254 (612)
...-+.|.||+|+|||+|.+.+++..... -+.+++.++. . .. ..+-.+-+-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 34458899999999999999999864210 1111111110 0 00 1122334555
Q ss_pred HHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 255 FSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 255 F~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
+..|-...|.++++||--+-. +......+.+++..+
T Consensus 107 la~al~~~p~~lllDEPt~~L------D~~~~~~l~~~l~~~ 142 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHL------DVEGERALNQAIAAL 142 (173)
T ss_pred HHHHHhcCCCEEEEECCcccc------CHHHHHHHHHHHHHH
Confidence 666667889999999975332 334444555555554
No 405
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.73 E-value=0.0023 Score=68.35 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=47.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEe-ccccc-----------c-hh--hhhHHHHHHHHHHHhhcCCeE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFAS-GAEFT-----------D-SE--KSGAARINEMFSIARRNAPAF 265 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs-~s~~~-----------~-~~--~~~~~~ir~lF~~A~~~~P~I 265 (612)
..++++++||+|+||||++++++....- .++.+. ..++. . .. +...-...++.+.+.+..|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 4568999999999999999999886642 222221 11110 0 00 111223677888888999999
Q ss_pred EEEccch
Q 007214 266 VFVDEID 272 (612)
Q Consensus 266 LfIDEiD 272 (612)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999985
No 406
>PF13245 AAA_19: Part of AAA domain
Probab=96.73 E-value=0.0022 Score=53.51 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=16.6
Q ss_pred eEEEEcCCCChHH-HHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKT-LFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT-~LAralA~e~ 228 (612)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566999999999 5555555544
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.73 E-value=0.0074 Score=59.57 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLA 225 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA 225 (612)
.-++|+||.|+|||++.+.++
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 468999999999999999998
No 408
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.72 E-value=0.0047 Score=50.29 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHc-CCCeeEEec
Q 007214 207 VLLSGPPGTGKTLFARTLAKES-GLPFVFASG 237 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~-g~~~i~vs~ 237 (612)
+.+.|+||+|||+++++++..+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999985 345555543
No 409
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.72 E-value=0.0049 Score=64.94 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=76.9
Q ss_pred ceecCc-ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHH
Q 007214 172 EVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR 250 (612)
Q Consensus 172 dvvG~~-e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ 250 (612)
++.+.+ +.++.+.+++-+.-.+ ..+..+-++|+|+.|+|||++.+.+..-+|-....+..+........
T Consensus 49 ~~~~~d~~~~~~l~~~lg~~L~~------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~---- 118 (304)
T TIGR01613 49 ETFGGDNELIEYLQRVIGYSLTG------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE---- 118 (304)
T ss_pred HHhCCCHHHHHHHHHHHhHHhcC------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC----
Confidence 344433 3455666665553333 13456779999999999999999998777755433222221111100
Q ss_pred HHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc-ccCCcccccccccEEEEEecCCCCCc---
Q 007214 251 INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK-ERTGIDRFSLRQAVIFICATNRPDEL--- 326 (612)
Q Consensus 251 ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~-~~~~~~~~~~~~~ViVIaaTN~p~~L--- 326 (612)
.-|..+.-....+++.||++.- .. .....+..+... |... ...+.+.+.......+|.+||.+-.+
T Consensus 119 --~~f~~a~l~gk~l~~~~E~~~~--~~-----~~~~~lK~lt~g-d~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~ 188 (304)
T TIGR01613 119 --HRFGLARLEGKRAVIGDEVQKG--YR-----DDESTFKSLTGG-DTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGF 188 (304)
T ss_pred --CCchhhhhcCCEEEEecCCCCC--cc-----ccHHhhhhhhcC-CeEEeecccCCcEEEEEeeEEEEEcCCCCccCCC
Confidence 0144444444568889998632 00 011223333210 1111 01111223333446778888875443
Q ss_pred cccccCCCceeEEEEeC
Q 007214 327 DLEFVRPGRIDRRLYIG 343 (612)
Q Consensus 327 D~aLlrpgRFd~~I~v~ 343 (612)
+.++.| |+ ..|.++
T Consensus 189 ~~a~~R--R~-~vi~f~ 202 (304)
T TIGR01613 189 DGGIKR--RL-RIIPFT 202 (304)
T ss_pred Chhhee--eE-EEEecc
Confidence 567888 77 455553
No 410
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.71 E-value=0.003 Score=63.43 Aligned_cols=71 Identities=30% Similarity=0.418 Sum_probs=43.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEI 271 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEi 271 (612)
|++....+++.||||||||+++..++.+ .|.+.++++..+-.+........+...|+.... .+.+.++|++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~-~~~l~i~d~~ 89 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE-EGKLVIIDAL 89 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh-cCCEEEEEcc
Confidence 5667778999999999999999987643 366788887654333221112222222333222 2456777754
No 411
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0011 Score=63.54 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
-++++|.||||||++++.++ ++|.+.++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8999887654
No 412
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0085 Score=57.60 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=50.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC----------C-----------eeEEecc-c-ccc-hh-----hhhHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGL----------P-----------FVFASGA-E-FTD-SE-----KSGAARINE 253 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~----------~-----------~i~vs~s-~-~~~-~~-----~~~~~~ir~ 253 (612)
+...+.|.||+|+|||+|++.+|+.... + +.++.-. . +.. .. ..+-.+-+-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 4456899999999999999999985410 1 0111100 0 110 00 111223444
Q ss_pred HHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 254 MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 254 lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
.+..|-...|.|+++||-.+-. +......+.+++..+
T Consensus 105 ~laral~~~p~illlDEPt~~L------D~~~~~~l~~~l~~~ 141 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGL------DPESRREFWELLREL 141 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCC------CHHHHHHHHHHHHHH
Confidence 5566667889999999976432 334444555555554
No 413
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.013 Score=63.79 Aligned_cols=26 Identities=38% Similarity=0.413 Sum_probs=22.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.|+.++|+||+|+||||++..+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
No 414
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.65 E-value=0.008 Score=64.45 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=58.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEecccc-cch--------hhh---------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEF-TDS--------EKS--------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~~-~~~--------~~~--------------- 246 (612)
|++...-++++|+||+|||+++..+|-.. +.+.++++...- ... .+.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 45556668899999999999999887432 236778876651 100 000
Q ss_pred -h---HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC---ChhHHHHHHHHHHHhcCCc
Q 007214 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK---DPRRRATFEALIAQLDGDK 300 (612)
Q Consensus 247 -~---~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~---~~~~~~~l~~LL~~ld~~~ 300 (612)
. ...+..+........+.+|+||=|-++......+ ...+.+.+.+++..|....
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA 259 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLA 259 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 0 0112222222345578999999999986532111 1233345667776665543
No 415
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.65 E-value=0.0044 Score=64.10 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=43.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC---CCeeEEe-cccccc-----h-h-hhhHHHHHHHHHHHhhcCCeEEEEccch
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESG---LPFVFAS-GAEFTD-----S-E-KSGAARINEMFSIARRNAPAFVFVDEID 272 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g---~~~i~vs-~s~~~~-----~-~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD 272 (612)
.+++.||+|+||||+++++..+.. ..++.+. ..++.- . . .........+...+.+..|.+|+++|+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 488999999999999999977653 2344432 111110 0 0 0111235666777778899999999995
No 416
>PRK01184 hypothetical protein; Provisional
Probab=96.65 E-value=0.0016 Score=63.14 Aligned_cols=29 Identities=38% Similarity=0.708 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
-|+|+||||+||||+++ +++++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999887654
No 417
>PLN02674 adenylate kinase
Probab=96.64 E-value=0.0032 Score=64.31 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=30.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+++..++|.||||+||||+++.+|..+|++.+ +..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHH
Confidence 34566999999999999999999999986554 5455543
No 418
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.63 E-value=0.0077 Score=57.39 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.6
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLA 225 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA 225 (612)
++..++.||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 419
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.61 E-value=0.0033 Score=58.26 Aligned_cols=29 Identities=38% Similarity=0.536 Sum_probs=25.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (612)
+..-++|.|+.|+|||+++|.+++.+|.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 44568999999999999999999999865
No 420
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.61 E-value=0.0092 Score=63.36 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc------C---CCeeEEecccccch--h-------hhh--------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES------G---LPFVFASGAEFTDS--E-------KSG-------------- 247 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~------g---~~~i~vs~s~~~~~--~-------~~~-------------- 247 (612)
|++...-+.++||||+|||+++..+|... | ...++++..+-... . +..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 45666678999999999999999987532 1 25677776652110 0 000
Q ss_pred -----HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC--Ch-hHHHHHHHHHHHhcCC
Q 007214 248 -----AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--DP-RRRATFEALIAQLDGD 299 (612)
Q Consensus 248 -----~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~--~~-~~~~~l~~LL~~ld~~ 299 (612)
...+..+........+.+|+||=+-++......+ .. .+...+.+++..|..+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~l 231 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRL 231 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHH
Confidence 0012222222334568899999999986432111 11 2234456666666554
No 421
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.60 E-value=0.0031 Score=62.62 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=45.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR 285 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~ 285 (612)
-++++||+|||||.+|-++|++.|.|++..+.-..-.....+..+-.. .+. +..+ =++|||-..- .+.-..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~--~el-~~~~-RiyL~~r~l~-----~G~i~a 73 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTP--SEL-KGTR-RIYLDDRPLS-----DGIINA 73 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---S--GGG-TT-E-EEES----GG-----G-S--H
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCH--HHH-cccc-eeeecccccc-----CCCcCH
Confidence 468999999999999999999999999999866655442222111100 000 1112 2788865432 122233
Q ss_pred HHHHHHHHHHhcCCcc
Q 007214 286 RATFEALIAQLDGDKE 301 (612)
Q Consensus 286 ~~~l~~LL~~ld~~~~ 301 (612)
......|+..++....
T Consensus 74 ~ea~~~Li~~v~~~~~ 89 (233)
T PF01745_consen 74 EEAHERLISEVNSYSA 89 (233)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 4456677777777654
No 422
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.60 E-value=0.016 Score=65.53 Aligned_cols=40 Identities=43% Similarity=0.497 Sum_probs=31.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~~i~vs~s~ 239 (612)
|++...-+||+|+||||||+|+..++.+ .|-+.++++..+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 4566677999999999999999987543 266777777555
No 423
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.60 E-value=0.0047 Score=68.33 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=44.1
Q ss_pred cCce-EEEEcCCCChHHHHHHHHHHHcCCCee-EEecccccchhhhhH----------HHHHHHHHHHhhcCCeEEEEcc
Q 007214 203 FVRG-VLLSGPPGTGKTLFARTLAKESGLPFV-FASGAEFTDSEKSGA----------ARINEMFSIARRNAPAFVFVDE 270 (612)
Q Consensus 203 ~p~g-vLL~GPPGTGKT~LAralA~e~g~~~i-~vs~s~~~~~~~~~~----------~~ir~lF~~A~~~~P~ILfIDE 270 (612)
.|.| +|++||.|+|||+..-++.++++-+.. .++..+-.+....+. -.....++..-++.|.||++.|
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGE 335 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGE 335 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEec
Confidence 3466 567799999999999999988866544 233333222211100 0133444455567899999999
Q ss_pred ch
Q 007214 271 ID 272 (612)
Q Consensus 271 iD 272 (612)
|-
T Consensus 336 IR 337 (500)
T COG2804 336 IR 337 (500)
T ss_pred cC
Confidence 95
No 424
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.59 E-value=0.0016 Score=58.45 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHc
Q 007214 207 VLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~ 228 (612)
|+|.|+|||||||+|+.++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 425
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.01 Score=63.99 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=58.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc--CCCeeEEecccccchhh---------------hhHHHHHHHHHHHhhcCCe
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES--GLPFVFASGAEFTDSEK---------------SGAARINEMFSIARRNAPA 264 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~--g~~~i~vs~s~~~~~~~---------------~~~~~ir~lF~~A~~~~P~ 264 (612)
-+..-+|+-|.||.|||||.-.+|..+ ..+++||++.+-..... ..+.++.++.+......|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 344457888999999999988776654 23899999888543321 1234577888889999999
Q ss_pred EEEEccchhhhccC
Q 007214 265 FVFVDEIDAIAGRH 278 (612)
Q Consensus 265 ILfIDEiD~l~~~~ 278 (612)
+++||-|+.+....
T Consensus 171 lvVIDSIQT~~s~~ 184 (456)
T COG1066 171 LVVIDSIQTLYSEE 184 (456)
T ss_pred EEEEeccceeeccc
Confidence 99999999997654
No 426
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.57 E-value=0.0013 Score=61.66 Aligned_cols=33 Identities=42% Similarity=0.649 Sum_probs=26.6
Q ss_pred EEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 209 LSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 209 L~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
|.||||+|||++|+.+|.++|. ..++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHH
Confidence 6899999999999999999875 45665665543
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.57 E-value=0.015 Score=56.62 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 007214 207 VLLSGPPGTGKTLFARTLA 225 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA 225 (612)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 428
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.57 E-value=0.0043 Score=66.12 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
.+.+.|.|+||||||+|++++++.++.+++.-.+.++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHH
Confidence 4579999999999999999999999998875554443
No 429
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.56 E-value=0.011 Score=61.33 Aligned_cols=176 Identities=11% Similarity=0.104 Sum_probs=94.5
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHH
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~i 251 (612)
+++.-+++.+-+..+...++.| ..+.||.|.+|+||++++|..|.-++..++.+....--. .......+
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~-~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS-IKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHHHHHHHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH-HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC-HHHHHHHH
Confidence 5566677777788888888766 246899999999999999999988888888776443110 12233457
Q ss_pred HHHHHHHh-hcCCeEEEEccchhh-----------hccCC----CCChhHHHHHHHHHHHhcCCcccCC----cccc--c
Q 007214 252 NEMFSIAR-RNAPAFVFVDEIDAI-----------AGRHA----RKDPRRRATFEALIAQLDGDKERTG----IDRF--S 309 (612)
Q Consensus 252 r~lF~~A~-~~~P~ILfIDEiD~l-----------~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~----~~~~--~ 309 (612)
+.++..|- ++.|++++|+|-+-. ..... -..++.+..++.+-........... .+.| .
T Consensus 78 k~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~r 157 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIER 157 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHH
Confidence 77776665 456888888775432 11111 0234445555555444332211100 0001 1
Q ss_pred ccccEEEEEecCCC-CCc------cccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC
Q 007214 310 LRQAVIFICATNRP-DEL------DLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK 361 (612)
Q Consensus 310 ~~~~ViVIaaTN~p-~~L------D~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~ 361 (612)
.+.++-||.+-+.. +.+ -|+|.. +. ...-+...+.+....+-..++...
T Consensus 158 vr~nLHivl~~sp~~~~~r~~~~~fPaL~~--~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 158 VRKNLHIVLCMSPVGPNFRDRCRSFPALVN--CC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp HCCCEEEEEEESTTTTCCCHHHHHHCCHHH--HS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred HHhheeEEEEECCCCchHHHHHHhCcchhc--cc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 22445444444332 222 345554 33 355566667788888887777643
No 430
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.55 E-value=0.013 Score=68.63 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCccCce--EEEEcCCCChHHHHHHHHHHH
Q 007214 200 GVQFVRG--VLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 200 g~~~p~g--vLL~GPPGTGKT~LAralA~e 227 (612)
.+..+.| +-+.|++|||||||+|.+.+-
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3444555 999999999999999999874
No 431
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.54 E-value=0.0047 Score=66.88 Aligned_cols=67 Identities=25% Similarity=0.344 Sum_probs=44.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC-----CCeeEEecc-ccc-----------ch-hhhhHHHHHHHHHHHhhcCCeEEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA-EFT-----------DS-EKSGAARINEMFSIARRNAPAFVF 267 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g-----~~~i~vs~s-~~~-----------~~-~~~~~~~ir~lF~~A~~~~P~ILf 267 (612)
.+|++||+|+||||++++++++.. ..++.+.-. ++. .. .+.....+....+.+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 588999999999999999987662 334444211 111 00 111112355667777788999999
Q ss_pred Eccch
Q 007214 268 VDEID 272 (612)
Q Consensus 268 IDEiD 272 (612)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99985
No 432
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.54 E-value=0.0041 Score=63.87 Aligned_cols=45 Identities=40% Similarity=0.639 Sum_probs=36.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE 244 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~ 244 (612)
|++..+.+|++|+||||||+++..++.+ .|-|+++++..+-....
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 5666778999999999999999988643 38899999877755543
No 433
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.54 E-value=0.0056 Score=62.48 Aligned_cols=34 Identities=29% Similarity=0.608 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
|+|+|+||+|||++|+++++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999876 567777765444
No 434
>PRK04182 cytidylate kinase; Provisional
Probab=96.54 E-value=0.0022 Score=61.32 Aligned_cols=29 Identities=52% Similarity=0.762 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
-|+|.|+||+|||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999998764
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.53 E-value=0.0034 Score=66.38 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=47.0
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEe-ccccc--c--------h-h--hhhHHHHHHHHHHHhhcCCe
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFAS-GAEFT--D--------S-E--KSGAARINEMFSIARRNAPA 264 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs-~s~~~--~--------~-~--~~~~~~ir~lF~~A~~~~P~ 264 (612)
.+....+++.||+|+|||++++++++...- ..+.+. ..++. . . . +...-.+.+++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 445678999999999999999999986632 222221 01110 0 0 0 01112356777778888999
Q ss_pred EEEEccch
Q 007214 265 FVFVDEID 272 (612)
Q Consensus 265 ILfIDEiD 272 (612)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999985
No 436
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.52 E-value=0.0029 Score=67.82 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=47.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEec-cccc-----------ch--hhhhHHHHHHHHHHHhhcCCeE
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASG-AEFT-----------DS--EKSGAARINEMFSIARRNAPAF 265 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~-s~~~-----------~~--~~~~~~~ir~lF~~A~~~~P~I 265 (612)
+..+++|+.||+|+||||+++++++.... .++.+.- .++. .. .+.+.-....++..+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 44578999999999999999999987632 2222211 1110 00 0111223667888888889999
Q ss_pred EEEccch
Q 007214 266 VFVDEID 272 (612)
Q Consensus 266 LfIDEiD 272 (612)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999984
No 437
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.52 E-value=0.045 Score=55.50 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 007214 207 VLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~ 226 (612)
-+|+||||+|||+|+-.+|-
T Consensus 4 ~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 58999999999999998875
No 438
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.51 E-value=0.061 Score=54.82 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=72.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEecccccchhh--------------hh-H---HH----HHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTDSEK--------------SG-A---AR----INEMFSI 257 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s~~~~~~~--------------~~-~---~~----ir~lF~~ 257 (612)
+.|-.+.+.|++|||||++++.+.....- ..+.+-++....... .. . .+ +.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34557999999999999999999765533 222222221111000 00 0 01 1112211
Q ss_pred Hhh---cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCC
Q 007214 258 ARR---NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (612)
Q Consensus 258 A~~---~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpg 334 (612)
... ..+++|++|++-. + ....+.+.+++.. |. .-++-+|.++.....+|+.++.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~-----~~k~~~l~~~~~~--gR-----------H~~is~i~l~Q~~~~lp~~iR~-- 147 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K-----KLKSKILRQFFNN--GR-----------HYNISIIFLSQSYFHLPPNIRS-- 147 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c-----hhhhHHHHHHHhc--cc-----------ccceEEEEEeeecccCCHHHhh--
Confidence 111 3368999999732 1 1223345555542 21 1236777778888899999866
Q ss_pred ceeEEEEeCCCCHHHHHHHHHHH
Q 007214 335 RIDRRLYIGLPDAKQRVQIFDVH 357 (612)
Q Consensus 335 RFd~~I~v~~Pd~~eR~~Il~~~ 357 (612)
-.+..+-+. -+......|++.+
T Consensus 148 n~~y~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 148 NIDYFIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred cceEEEEec-CcHHHHHHHHHhc
Confidence 677777665 4566666565544
No 439
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.068 Score=54.31 Aligned_cols=136 Identities=6% Similarity=0.040 Sum_probs=92.7
Q ss_pred ccCceEEEEcCCC-ChHHHHHHHHHHHcCC---------CeeEEecccccch--hhhhHHHHHHHHHHHhh----cCCeE
Q 007214 202 QFVRGVLLSGPPG-TGKTLFARTLAKESGL---------PFVFASGAEFTDS--EKSGAARINEMFSIARR----NAPAF 265 (612)
Q Consensus 202 ~~p~gvLL~GPPG-TGKT~LAralA~e~g~---------~~i~vs~s~~~~~--~~~~~~~ir~lF~~A~~----~~P~I 265 (612)
+.....|+.|..+ +||..++.-++..+-. .+..+....-... ..-+...+|++-+.+.. ....|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 4556799999998 9999998887765421 1333322110000 11234456666555432 34479
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCC
Q 007214 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLP 345 (612)
Q Consensus 266 LfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~P 345 (612)
++|+++|.+. ....|.||..++.-. .++++|..|+.++.+.|.+++ |+ ..+.+..|
T Consensus 93 iII~~ae~mt----------~~AANALLKtLEEPP-----------~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p 148 (263)
T PRK06581 93 AIIYSAELMN----------LNAANSCLKILEDAP-----------KNSYIFLITSRAASIISTIRS--RC-FKINVRSS 148 (263)
T ss_pred EEEechHHhC----------HHHHHHHHHhhcCCC-----------CCeEEEEEeCChhhCchhHhh--ce-EEEeCCCC
Confidence 9999999994 347799999998733 346777778889999999998 88 68899999
Q ss_pred CHHHHHHHHHHHhcCC
Q 007214 346 DAKQRVQIFDVHSAGK 361 (612)
Q Consensus 346 d~~eR~~Il~~~l~~~ 361 (612)
+...-.+.....+...
T Consensus 149 ~~~~~~e~~~~~~~p~ 164 (263)
T PRK06581 149 ILHAYNELYSQFIQPI 164 (263)
T ss_pred CHHHHHHHHHHhcccc
Confidence 8887777776665533
No 440
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.50 E-value=0.002 Score=61.18 Aligned_cols=26 Identities=42% Similarity=0.795 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
|.|+|+||||||||+++++.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 88866
No 441
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.50 E-value=0.0048 Score=75.18 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=90.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch--h-h------hh-HHHHHHHHHHHhhcCCeEEEEccchhhh
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--E-K------SG-AARINEMFSIARRNAPAFVFVDEIDAIA 275 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~--~-~------~~-~~~ir~lF~~A~~~~P~ILfIDEiD~l~ 275 (612)
.+|+.||.-+|||++...+|++.|-.|+.++-.+..+. + | .| ..--..+.-.|-++. --|++||+....
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccCc
Confidence 49999999999999999999999999999997765432 1 1 01 111223444454444 457889996442
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC------CccccccCCCceeEEEEeCCCCHHH
Q 007214 276 GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD------ELDLEFVRPGRIDRRLYIGLPDAKQ 349 (612)
Q Consensus 276 ~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~------~LD~aLlrpgRFd~~I~v~~Pd~~e 349 (612)
. ..-..+|.||..-....-........+..++.++||-|.|. .|..|++. || ..++|.--...+
T Consensus 969 -T------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFddipedE 1038 (4600)
T COG5271 969 -T------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDDIPEDE 1038 (4600)
T ss_pred -H------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-HhhhcccCcHHH
Confidence 1 12234444443222211111122234556788999999885 46778887 88 567776666788
Q ss_pred HHHHHHHHh
Q 007214 350 RVQIFDVHS 358 (612)
Q Consensus 350 R~~Il~~~l 358 (612)
...||+..+
T Consensus 1039 le~ILh~rc 1047 (4600)
T COG5271 1039 LEEILHGRC 1047 (4600)
T ss_pred HHHHHhccC
Confidence 888886443
No 442
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.48 E-value=0.0024 Score=66.70 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
++-+++.|||||||||+|+.+++++. +++.++...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 45688999999999999999999983 3444454443
No 443
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.47 E-value=0.0038 Score=61.64 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHc
Q 007214 207 VLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~ 228 (612)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998777776554
No 444
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.027 Score=61.67 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=27.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEeccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~ 239 (612)
.+.-+++.||+|+||||++..+|... |..+..+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 35568899999999999999998654 44455555444
No 445
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.46 E-value=0.02 Score=56.48 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLA 225 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA 225 (612)
+.++|+||.|+|||+|.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 446
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.45 E-value=0.019 Score=55.60 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=23.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.+..-+.|.||+|+|||+|++.+++..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999854
No 447
>PLN02199 shikimate kinase
Probab=96.45 E-value=0.0046 Score=64.56 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 179 VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 179 ~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.|+.-.++..++.+ +.|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 89 Lk~~a~~i~~~l~~------------~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 89 LKRKAEEVKPYLNG------------RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred HHHHHHHHHHHcCC------------CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 55555666555543 47999999999999999999999999988554
No 448
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.44 E-value=0.0028 Score=60.21 Aligned_cols=29 Identities=45% Similarity=0.776 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
|.++|+||+|||++|+.+|+.+|.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999987643
No 449
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.43 E-value=0.01 Score=56.81 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
-+++.||||+|||++++.+|..+ |..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 36889999999999999998764 667777776644
No 450
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.43 E-value=0.014 Score=56.71 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=41.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc-------------CCCeeEEecccccch-----------h-------hh--------
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES-------------GLPFVFASGAEFTDS-----------E-------KS-------- 246 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~-------------g~~~i~vs~s~~~~~-----------~-------~~-------- 246 (612)
-++++||||+|||+++-.+|... +.+++++++..-... . ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48899999999999999887643 235667765442100 0 00
Q ss_pred -----------hHHHHHHHHHHHhh-cCCeEEEEccchhhhcc
Q 007214 247 -----------GAARINEMFSIARR-NAPAFVFVDEIDAIAGR 277 (612)
Q Consensus 247 -----------~~~~ir~lF~~A~~-~~P~ILfIDEiD~l~~~ 277 (612)
....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123445555566 57899999999999754
No 451
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.028 Score=61.14 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=28.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
.|+-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 45779999999999999999998765 44555555543
No 452
>PRK14526 adenylate kinase; Provisional
Probab=96.41 E-value=0.0028 Score=63.36 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
++|.||||+|||++++.+|+.++.+.+ +..++.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 789999999999999999999887654 444543
No 453
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.40 E-value=0.016 Score=65.92 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHH
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
.+++...+|+.||+|||||+|.||+|+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345667799999999999999999997
No 454
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.39 E-value=0.0065 Score=64.73 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=53.0
Q ss_pred ccc-ceecCcccHHHHHHHHHHhCCchhhhhcCCc-cCceEEEEcCCCChHHHHHHHHHHHcC-CCeeEEecccccch-h
Q 007214 169 MYK-EVVLGGDVWDLLDELMIYMGNPMQYYERGVQ-FVRGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGAEFTDS-E 244 (612)
Q Consensus 169 ~f~-dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~-~p~gvLL~GPPGTGKT~LAralA~e~g-~~~i~vs~s~~~~~-~ 244 (612)
.|+ ++.|.+ +.|.++|++++.. ..|.. ..+-++|.||+|+|||+|++.+.+-+. .+++.+..+-..+. .
T Consensus 58 ~f~~~~~G~~---~~i~~lV~~fk~A----A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL 130 (358)
T PF08298_consen 58 FFEDEFYGME---ETIERLVNYFKSA----AQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPL 130 (358)
T ss_pred CccccccCcH---HHHHHHHHHHHHH----HhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChh
Confidence 466 788876 5678888888765 22333 345678999999999999999977552 36666644444433 3
Q ss_pred hhhHHHHHHHHHH
Q 007214 245 KSGAARINEMFSI 257 (612)
Q Consensus 245 ~~~~~~ir~lF~~ 257 (612)
......+|..|..
T Consensus 131 ~L~P~~~r~~~~~ 143 (358)
T PF08298_consen 131 HLFPKELRREFED 143 (358)
T ss_pred hhCCHhHHHHHHH
Confidence 3334455655543
No 455
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.38 E-value=0.02 Score=56.94 Aligned_cols=116 Identities=18% Similarity=0.293 Sum_probs=67.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEe----------------------------------cccccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS----------------------------------GAEFTD 242 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs----------------------------------~s~~~~ 242 (612)
|++.+.-+++.|+.|||||.|+..+|--+ |....+++ ...+..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 35555568899999999999999986421 32332222 111111
Q ss_pred hhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 007214 243 SEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (612)
Q Consensus 243 ~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (612)
........+..+.+.-+.....+++||-+..+.... ....+.++++.+..+.... . +||. |-+
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~g---------K-vIil-Tvh 166 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLG---------K-VIIL-TVH 166 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHHHHHHHHhCC---------C-EEEE-EeC
Confidence 111222335566666666667899999999987431 2234455555555444322 1 3343 455
Q ss_pred CCCccccccC
Q 007214 323 PDELDLEFVR 332 (612)
Q Consensus 323 p~~LD~aLlr 332 (612)
|..+|.+++-
T Consensus 167 p~~l~e~~~~ 176 (235)
T COG2874 167 PSALDEDVLT 176 (235)
T ss_pred hhhcCHHHHH
Confidence 7888887765
No 456
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.37 E-value=0.01 Score=63.92 Aligned_cols=23 Identities=52% Similarity=0.730 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999887
No 457
>PF13479 AAA_24: AAA domain
Probab=96.37 E-value=0.0063 Score=60.76 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=39.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCee-EEeccc--c--c-ch---hhhhHHHHHHHHHHHh--hcCCeEEEEccch
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV-FASGAE--F--T-DS---EKSGAARINEMFSIAR--RNAPAFVFVDEID 272 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i-~vs~s~--~--~-~~---~~~~~~~ir~lF~~A~--~~~P~ILfIDEiD 272 (612)
+-.++||||||+|||++|..+ +-|++ .+..+. + . .. ....-..+.+.+..+. ...-..|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 456999999999999999887 33432 222221 0 0 00 0112334555554432 2344689999988
Q ss_pred hh
Q 007214 273 AI 274 (612)
Q Consensus 273 ~l 274 (612)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 86
No 458
>PRK10867 signal recognition particle protein; Provisional
Probab=96.37 E-value=0.016 Score=63.93 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=45.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecccccchhh---------------------hhHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSEK---------------------SGAARINEMFS 256 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~~~~~~~---------------------~~~~~ir~lF~ 256 (612)
.+|.-++++||+|+||||++..+|..+ |..+..+++..+..... ......+....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457889999999999999877777533 66777777664432110 01122334555
Q ss_pred HHhhcCCeEEEEccch
Q 007214 257 IARRNAPAFVFVDEID 272 (612)
Q Consensus 257 ~A~~~~P~ILfIDEiD 272 (612)
.++.....+|+||=.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 5666666788888654
No 459
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.36 E-value=0.0087 Score=56.95 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=32.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~ 243 (612)
|.-|.|+|.||+|||++|+++.+.+ |.+.+.+++..+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 3468899999999999999998765 899999998877643
No 460
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.33 E-value=0.046 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (612)
.+-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999963
No 461
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.33 E-value=0.0099 Score=64.34 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 177 GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 177 ~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++.++.+..+++.+.+ ..|..+++.||.|||||++.+++...+
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 3445555555554432 356789999999999999999997765
No 462
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.30 E-value=0.022 Score=55.90 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.+...+.|.||+|+|||+|.+.+|+..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345668999999999999999999865
No 463
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.30 E-value=0.0085 Score=62.23 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=45.3
Q ss_pred cCce-EEEEcCCCChHHHHHHHHHHHcCC----CeeEE---------ecccccch--hhhhHHHHHHHHHHHhhcCCeEE
Q 007214 203 FVRG-VLLSGPPGTGKTLFARTLAKESGL----PFVFA---------SGAEFTDS--EKSGAARINEMFSIARRNAPAFV 266 (612)
Q Consensus 203 ~p~g-vLL~GPPGTGKT~LAralA~e~g~----~~i~v---------s~s~~~~~--~~~~~~~ir~lF~~A~~~~P~IL 266 (612)
.|+| ||++||.|+||||...++-...+. +++.+ +-..+... .+.....+...++.|-+..|.||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3566 677799999999999999876643 33322 22222222 12222335566667777889999
Q ss_pred EEccch
Q 007214 267 FVDEID 272 (612)
Q Consensus 267 fIDEiD 272 (612)
++-|+-
T Consensus 203 lvGEmR 208 (353)
T COG2805 203 LVGEMR 208 (353)
T ss_pred EEeccc
Confidence 999985
No 464
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.29 E-value=0.013 Score=63.10 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-.+|+||||||||+|++.+|+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998865
No 465
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.29 E-value=0.03 Score=62.60 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=80.2
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcC--CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe-ccc---ccc---
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERG--VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS-GAE---FTD--- 242 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g--~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs-~s~---~~~--- 242 (612)
.|.|.+.+|+.|--+.- -.-++.-.-| ++..-+|||.|.|-|-|+.|.|.+-+-+...+-... +++ +..
T Consensus 302 SI~GH~~vKkAillLLl--GGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLL--GGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHh--ccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 35677888877654432 1111111112 345567999999999999999999765432221110 000 000
Q ss_pred -hhhhhHHHHHH-HHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 -SEKSGAARINE-MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 -~~~~~~~~ir~-lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
....|++++.. ..-.| ...|++|||+|.+.. ..+-.+....++-.-.....|++ -+.+...-|+||.
T Consensus 380 tD~eTGERRLEAGAMVLA---DRGVVCIDEFDKMsD-------iDRvAIHEVMEQqtVTIaKAGIH-asLNARCSVlAAA 448 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLA---DRGVVCIDEFDKMSD-------IDRVAIHEVMEQQTVTIAKAGIH-ASLNARCSVLAAA 448 (818)
T ss_pred eccccchhhhhcCceEEc---cCceEEehhcccccc-------hhHHHHHHHHhcceEEeEeccch-hhhccceeeeeec
Confidence 01122333321 11111 236999999998842 12222333332211111112221 2233457899999
Q ss_pred CCCC-------------CccccccCCCceeEEEEe
Q 007214 321 NRPD-------------ELDLEFVRPGRIDRRLYI 342 (612)
Q Consensus 321 N~p~-------------~LD~aLlrpgRFd~~I~v 342 (612)
|... .|+..|++ |||..+.+
T Consensus 449 NPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 449 NPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred CccccccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 9753 36778898 99975443
No 466
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.28 E-value=0.015 Score=60.65 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=29.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----C-CCeeEEecccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES----G-LPFVFASGAEF 240 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g-~~~i~vs~s~~ 240 (612)
.++.++|+||+|+||||++..+|..+ | ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45678999999999999999998754 3 56666665543
No 467
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.022 Score=54.92 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||+|++++++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34558899999999999999998754
No 468
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.22 E-value=0.023 Score=62.56 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=30.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
..|.-++|+||+|+||||++..+|..+ |..+..+++..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 346779999999999999999998755 666666666443
No 469
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.22 E-value=0.0048 Score=59.37 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
+.|.-++|.|+||+|||++++++++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3566799999999999999999998875
No 470
>PLN02459 probable adenylate kinase
Probab=96.22 E-value=0.0049 Score=63.43 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
..++|.||||+||||+++.+|+.+|++.+ +..++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHHH
Confidence 34888999999999999999999886654 445544
No 471
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.22 E-value=0.025 Score=62.46 Aligned_cols=71 Identities=21% Similarity=0.224 Sum_probs=45.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHH----cCCCeeEEecccccchhh---------------------hhHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEFTDSEK---------------------SGAARINEMFS 256 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e----~g~~~i~vs~s~~~~~~~---------------------~~~~~ir~lF~ 256 (612)
..|.-++++||||+|||+++..+|.. .|..+..++|..+..... ..........+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 35788999999999999998888765 356777777664432100 00112344555
Q ss_pred HHhhcCCeEEEEccch
Q 007214 257 IARRNAPAFVFVDEID 272 (612)
Q Consensus 257 ~A~~~~P~ILfIDEiD 272 (612)
.+......+|+||=.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 5555666788888653
No 472
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.21 E-value=0.038 Score=62.44 Aligned_cols=77 Identities=25% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh-------hh----------------------h
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-------KS----------------------G 247 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~-------~~----------------------~ 247 (612)
|++....++++||||+|||+++..++.+. |-+.++++..+-.+.. +. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666778999999999999999987543 7788887755422110 00 0
Q ss_pred HHHHHHHHHHHhhcCCeEEEEccchhhhc
Q 007214 248 AARINEMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 248 ~~~ir~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
...+..+-+......|.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 11122333344456788999999998853
No 473
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.17 E-value=0.0095 Score=65.23 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=28.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
..+.|.|.|++|||||||+++||..+|.+.+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 45679999999999999999999998888654
No 474
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.16 E-value=0.03 Score=64.14 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.7
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+++..-+.+.||+|+|||||++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3445569999999999999999999854
No 475
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.14 E-value=0.008 Score=62.48 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCCeEEEEccc-hhhh
Q 007214 251 INEMFSIARRNAPAFVFVDEI-DAIA 275 (612)
Q Consensus 251 ir~lF~~A~~~~P~ILfIDEi-D~l~ 275 (612)
-+.+|.+|.++.|-.|++||. +.|+
T Consensus 185 p~NiF~~Aa~~GPiaIImDECMe~Lg 210 (369)
T PF02456_consen 185 PNNIFAQAAKKGPIAIIMDECMEKLG 210 (369)
T ss_pred chHHHHHHHhcCCEEEEhHHHHHHhc
Confidence 579999999999999999996 4444
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.14 E-value=0.07 Score=56.75 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=28.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
..|.-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 356778999999999999999998765 4455555543
No 477
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.12 E-value=0.025 Score=55.08 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
|.|+|++|||||++++.++...+.+++ ++.++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~ 35 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAH 35 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHH
Confidence 679999999999999999987667765 4445543
No 478
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.11 E-value=0.04 Score=57.25 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=29.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
..++-++|.||||+|||+++..+|..+ |..+..+++.-
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 456788899999999999999988655 55565565543
No 479
>PRK14529 adenylate kinase; Provisional
Probab=96.10 E-value=0.0046 Score=62.35 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
.++|.||||+||||+++.+|..++.+.++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 38899999999999999999999987653
No 480
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.09 E-value=0.049 Score=55.40 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=57.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-----HcCCCe--------------eEEeccc-ccc---hhhhhHHHHHHHHHHHhh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAK-----ESGLPF--------------VFASGAE-FTD---SEKSGAARINEMFSIARR 260 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~-----e~g~~~--------------i~vs~s~-~~~---~~~~~~~~ir~lF~~A~~ 260 (612)
.+.++|+||..+|||++.|++|- ++|.++ ..+...+ ... .+.....++..+++.+..
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 46799999999999999999964 334321 1111111 111 122334557777777654
Q ss_pred cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCC
Q 007214 261 NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE 325 (612)
Q Consensus 261 ~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~ 325 (612)
.++++|||+-. +....+.......+++.+... .+..++.||+..+.
T Consensus 123 --~sLvliDE~g~-----gT~~~eg~ai~~aile~l~~~------------~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 123 --KSLVLIDELGR-----GTNPEEGIAIAIAILEYLLEK------------SGCFVIIATHFHEL 168 (235)
T ss_dssp --TEEEEEESTTT-----TSSHHHHHHHHHHHHHHHHHT------------TT-EEEEEES-GGG
T ss_pred --ceeeecccccC-----CCChhHHHHHHHHHHHHHHHh------------ccccEEEEeccchh
Confidence 47999999842 122334445555666665431 12477888987654
No 481
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.018 Score=56.29 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
+..-+.|.||+|+|||+|++.+++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999973
No 482
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.09 E-value=0.031 Score=64.23 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.9
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+++..-+.|.||+|+|||||++.+++..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455669999999999999999998865
No 483
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.09 E-value=0.0081 Score=59.50 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=29.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC-CCeeEEecccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGAEF 240 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g-~~~i~vs~s~~ 240 (612)
.+.-|.|.||+|+|||||++++++.++ ..+..++...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 456789999999999999999999883 34555555554
No 484
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.09 E-value=0.055 Score=52.96 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++..-+.|.||+|+|||+|++.+++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999999854
No 485
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.05 E-value=0.0057 Score=59.58 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=24.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
..+.|.||+|+||||+++.+++..+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999988776543
No 486
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.05 E-value=0.016 Score=62.60 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=41.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC------CCeeEEe-cccccc-----------h--hhhhHHHHHHHHHHHhhcCCe
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESG------LPFVFAS-GAEFTD-----------S--EKSGAARINEMFSIARRNAPA 264 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g------~~~i~vs-~s~~~~-----------~--~~~~~~~ir~lF~~A~~~~P~ 264 (612)
..++++||+|+||||++++++++.. ..++.+. ..++.- . ............+.+....|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 3589999999999999999998752 2232221 001100 0 000011244555567778899
Q ss_pred EEEEccch
Q 007214 265 FVFVDEID 272 (612)
Q Consensus 265 ILfIDEiD 272 (612)
++++.|+-
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999974
No 487
>PTZ00494 tuzin-like protein; Provisional
Probab=96.02 E-value=0.93 Score=50.01 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=101.1
Q ss_pred hhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch---------------hhhhHHHHHHHHHHHhh-
Q 007214 197 YERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---------------EKSGAARINEMFSIARR- 260 (612)
Q Consensus 197 ~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~---------------~~~~~~~ir~lF~~A~~- 260 (612)
.++....|+-+.|.|..||||++|++.--..-++|.++++...-.+. -+....-+.+.+..|+.
T Consensus 388 ~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~ 467 (664)
T PTZ00494 388 TQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVK 467 (664)
T ss_pred hhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHh
Confidence 34445689999999999999999999998889999888874432211 11223446777887775
Q ss_pred --cCCeEEEE--ccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCc--cccccCCC
Q 007214 261 --NAPAFVFV--DEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL--DLEFVRPG 334 (612)
Q Consensus 261 --~~P~ILfI--DEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L--D~aLlrpg 334 (612)
..+-+|++ .|=+.| ....|..+..--...- ..+++=.. .+.| ....+.
T Consensus 468 ~~g~~P~lVlkLREGssL-----------~RVYnE~vaLacDrRl----------CHvv~EVp---lESLT~~n~~LP-- 521 (664)
T PTZ00494 468 ASDGVPFLVMRLREGSDL-----------GRVYGEVVSLVSDCQA----------CHIVLAVP---MKALTPLNVSSR-- 521 (664)
T ss_pred cCCCCCEEEEEeccCCcH-----------HHHHHHHHHHHccchh----------heeeeech---HhhhchhhccCc--
Confidence 22334433 333333 3455555443221110 11222111 2222 222333
Q ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 335 RIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 335 RFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
|+|. ..+|+-+.+|-.+..++.+. .+++..+. .+.|.+..||..|+- +..-.+-....-|.+.+.+|+.+
T Consensus 522 RLDF-y~VPnFSr~QAf~YtqH~lD------al~l~~Fv-evvGTnSnDlDEL~A--Av~qRrvs~~~YTnqkLlkAMRq 591 (664)
T PTZ00494 522 RLDF-YCIPPFSRRQAFAYAEHTLD------ALDLVCFV-EVVGTRSSDVDELCA--ALRQRGVDPVTYTSLMLARAMRR 591 (664)
T ss_pred ccee-EecCCcCHHHHHHHHhcccc------hhhhhhhh-hhhcCCcccHHHHHH--HHHHcCCCHHHHhHHHHHHHHHH
Confidence 8874 56777788877777665443 23333333 356778888888864 21111111122355666677665
Q ss_pred H
Q 007214 415 Q 415 (612)
Q Consensus 415 ~ 415 (612)
.
T Consensus 592 L 592 (664)
T PTZ00494 592 L 592 (664)
T ss_pred H
Confidence 4
No 488
>PRK12338 hypothetical protein; Provisional
Probab=96.02 E-value=0.0063 Score=64.34 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=26.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCe
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~ 232 (612)
.|.-+++.|+||||||++|+++|..+|...
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 467799999999999999999999998765
No 489
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.01 E-value=0.0081 Score=57.72 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=28.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
.+.-+.|.|+||+|||++++++++.+ |..+..+++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 34568899999999999999999876 4455656544
No 490
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.99 E-value=0.014 Score=56.52 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++...+.|.||+|+|||+|++.+++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999854
No 491
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.97 E-value=0.063 Score=54.15 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=56.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH-H----cCCCe---------e-----EEeccccc-ch---hhhhHHHHHHHHHHHh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAK-E----SGLPF---------V-----FASGAEFT-DS---EKSGAARINEMFSIAR 259 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~-e----~g~~~---------i-----~vs~s~~~-~~---~~~~~~~ir~lF~~A~ 259 (612)
..+-++|.||.|+|||++.+.++. . .|.+. + .+...+-. .. +.....++..+++.+.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~ 109 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT 109 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence 345689999999999999999976 2 23221 1 11111111 11 1222344566665553
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCc
Q 007214 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (612)
.|++++|||+..= ....+.......+++.+.... +..+|.+|..++..
T Consensus 110 --~~sLvllDE~~~g-----T~~~d~~~i~~~il~~l~~~~------------~~~~i~~TH~~~l~ 157 (222)
T cd03287 110 --SRSLVILDELGRG-----TSTHDGIAIAYATLHYLLEEK------------KCLVLFVTHYPSLG 157 (222)
T ss_pred --CCeEEEEccCCCC-----CChhhHHHHHHHHHHHHHhcc------------CCeEEEEcccHHHH
Confidence 5789999998521 111122222344555544321 13677788876643
No 492
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.97 E-value=0.014 Score=65.56 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=43.0
Q ss_pred Cce-EEEEcCCCChHHHHHHHHHHHcC---CCeeEEecc-ccc-----ch-hh-hhHHHHHHHHHHHhhcCCeEEEEccc
Q 007214 204 VRG-VLLSGPPGTGKTLFARTLAKESG---LPFVFASGA-EFT-----DS-EK-SGAARINEMFSIARRNAPAFVFVDEI 271 (612)
Q Consensus 204 p~g-vLL~GPPGTGKT~LAralA~e~g---~~~i~vs~s-~~~-----~~-~~-~~~~~ir~lF~~A~~~~P~ILfIDEi 271 (612)
+.| ++++||+|+||||+..++..++. ..++.+.-+ ++. .. .. ..........+.+.+..|.||++.|+
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEi 320 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCC
Confidence 345 68999999999999998877664 334444211 111 00 00 00112445556666788999999998
Q ss_pred h
Q 007214 272 D 272 (612)
Q Consensus 272 D 272 (612)
-
T Consensus 321 R 321 (486)
T TIGR02533 321 R 321 (486)
T ss_pred C
Confidence 4
No 493
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.96 E-value=0.043 Score=53.33 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
-..++||.|+|||.+..|++--
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~ 45 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFV 45 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999543
No 494
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.93 E-value=0.016 Score=62.25 Aligned_cols=69 Identities=28% Similarity=0.387 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEe-ccccc----------ch----hhhhHHHHHHHHHHHhhcCCeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGL--PFVFAS-GAEFT----------DS----EKSGAARINEMFSIARRNAPAFV 266 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs-~s~~~----------~~----~~~~~~~ir~lF~~A~~~~P~IL 266 (612)
.+++++.|++|+|||+++++++....- ..+.+. ..++. .. .+.+.-.+.++++.+.+..|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 468999999999999999999876532 122211 11111 00 01122346788888888999999
Q ss_pred EEccch
Q 007214 267 FVDEID 272 (612)
Q Consensus 267 fIDEiD 272 (612)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999984
No 495
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.92 E-value=0.0058 Score=58.91 Aligned_cols=26 Identities=42% Similarity=0.934 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCC
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES---GLP 231 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~ 231 (612)
.++|+|+||+||||+++.++.++ +.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 48999999999999999998877 555
No 496
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.92 E-value=0.0081 Score=58.38 Aligned_cols=36 Identities=36% Similarity=0.570 Sum_probs=28.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~ 242 (612)
|.+.|+||+|||++|+.++..+ |.++..++..+|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 6789999999999999999876 45666676666553
No 497
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.92 E-value=0.0084 Score=63.33 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=33.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
++-+++.||+|+|||++|..+|++++.++++++.-.+-.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~ 42 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYR 42 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceee
Confidence 457899999999999999999999999888777655543
No 498
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.89 E-value=0.02 Score=58.78 Aligned_cols=39 Identities=31% Similarity=0.500 Sum_probs=29.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s 238 (612)
|..+..=++|.|+||.|||+++-.+|..+ +.++++++..
T Consensus 15 G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE 57 (259)
T PF03796_consen 15 GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE 57 (259)
T ss_dssp SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 44555568899999999999999987643 5788888754
No 499
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.89 E-value=0.0077 Score=58.35 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
|.|+|+||+|||++++.+++ +|.+++. +.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHh
Confidence 68999999999999999998 7877654 4454433
No 500
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.22 Score=53.93 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=34.1
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCccC----CHHHHHHhcCCCcHHHHHHHH
Q 007214 339 RLYIGLPDAKQRVQIFDVHSAGKQLAEDV----NFEELVFRTVGFSGADIRNLV 388 (612)
Q Consensus 339 ~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv----dl~~La~~t~G~sgadL~~lv 388 (612)
.|+++..+.+|-.+++..|++..-+..++ ...++--.+ +.+|+.++.+|
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 58888999999999999888655443332 355555554 66777666665
Done!