Query 007214
Match_columns 612
No_of_seqs 570 out of 4332
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.1E-74 3.6E-79 637.0 43.7 412 165-611 10-429 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.8E-71 6.3E-76 614.4 38.8 423 145-611 9-439 (499)
3 4b4t_J 26S protease regulatory 100.0 1.6E-51 5.3E-56 441.1 27.3 246 163-417 140-391 (405)
4 4b4t_I 26S protease regulatory 100.0 2.5E-50 8.5E-55 433.0 28.4 246 163-417 174-425 (437)
5 4b4t_H 26S protease regulatory 100.0 1.3E-49 4.5E-54 431.1 26.8 246 163-417 201-452 (467)
6 4b4t_L 26S protease subunit RP 100.0 2.2E-49 7.5E-54 430.2 27.6 245 163-416 173-423 (437)
7 4b4t_M 26S protease regulatory 100.0 2.2E-49 7.5E-54 429.9 26.3 245 163-416 173-423 (434)
8 4b4t_K 26S protease regulatory 100.0 1.3E-48 4.4E-53 423.6 28.1 245 163-416 164-415 (428)
9 3cf2_A TER ATPase, transitiona 100.0 9.4E-44 3.2E-48 410.5 19.1 284 164-487 197-500 (806)
10 3cf2_A TER ATPase, transitiona 100.0 1.8E-43 6.3E-48 408.0 6.3 227 163-398 469-701 (806)
11 1lv7_A FTSH; alpha/beta domain 100.0 2.4E-37 8.1E-42 313.4 28.2 244 164-416 5-253 (257)
12 2x8a_A Nuclear valosin-contain 100.0 2E-37 6.8E-42 318.7 21.7 243 164-415 3-264 (274)
13 2di4_A Zinc protease, cell div 100.0 8E-38 2.7E-42 312.6 14.2 164 431-611 6-172 (238)
14 3cf0_A Transitional endoplasmi 100.0 7.4E-37 2.5E-41 318.1 21.4 242 164-414 8-280 (301)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.7E-36 9.1E-41 304.8 20.8 243 166-417 1-251 (262)
16 3h4m_A Proteasome-activating n 100.0 3.5E-35 1.2E-39 301.2 28.7 245 164-417 10-260 (285)
17 1ixz_A ATP-dependent metallopr 100.0 3.3E-35 1.1E-39 297.1 26.7 240 164-412 9-253 (254)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.8E-35 2E-39 307.0 25.0 224 164-398 5-233 (322)
19 3hu3_A Transitional endoplasmi 100.0 7.2E-35 2.5E-39 322.3 26.3 227 166-401 199-428 (489)
20 1iy2_A ATP-dependent metallopr 100.0 5.3E-34 1.8E-38 292.7 26.8 253 147-412 20-277 (278)
21 3eie_A Vacuolar protein sortin 100.0 5.2E-35 1.8E-39 306.8 18.8 225 163-398 10-238 (322)
22 2qp9_X Vacuolar protein sortin 100.0 7.8E-34 2.7E-38 302.2 22.5 224 164-398 44-271 (355)
23 2r62_A Cell division protease 100.0 2.8E-36 9.5E-41 306.9 3.2 244 164-415 4-253 (268)
24 2zan_A Vacuolar protein sortin 100.0 2.2E-32 7.4E-37 299.5 18.9 225 163-398 126-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 8.3E-31 2.8E-35 279.0 23.9 243 164-416 77-335 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 8.8E-31 3E-35 270.2 20.4 242 164-414 14-271 (297)
27 1ypw_A Transitional endoplasmi 100.0 7.7E-33 2.6E-37 323.1 -1.3 228 163-399 469-702 (806)
28 3vfd_A Spastin; ATPase, microt 100.0 9.7E-30 3.3E-34 273.5 21.8 242 164-415 108-365 (389)
29 3t15_A Ribulose bisphosphate c 100.0 1.5E-30 5.1E-35 269.8 9.2 183 199-387 31-223 (293)
30 1ypw_A Transitional endoplasmi 100.0 1.6E-27 5.6E-32 278.2 23.9 230 164-402 197-429 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 7.7E-26 2.6E-30 248.3 0.0 202 165-390 31-262 (456)
32 3uk6_A RUVB-like 2; hexameric 99.9 3.1E-22 1E-26 212.0 17.9 219 165-414 38-329 (368)
33 3syl_A Protein CBBX; photosynt 99.9 5.2E-22 1.8E-26 205.2 16.1 224 169-409 28-280 (309)
34 3pfi_A Holliday junction ATP-d 99.9 6.4E-21 2.2E-25 199.9 20.7 223 164-414 22-253 (338)
35 1d2n_A N-ethylmaleimide-sensit 99.8 8.1E-20 2.8E-24 186.2 16.5 203 170-392 32-246 (272)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 1.3E-19 4.5E-24 188.2 17.2 225 164-414 5-237 (324)
37 1ofh_A ATP-dependent HSL prote 99.8 1.3E-19 4.3E-24 186.6 15.3 241 171-414 15-298 (310)
38 3m6a_A ATP-dependent protease 99.8 1.6E-19 5.6E-24 202.2 9.7 233 166-414 76-340 (543)
39 1g41_A Heat shock protein HSLU 99.8 6.7E-20 2.3E-24 199.2 4.7 169 171-356 15-190 (444)
40 2r44_A Uncharacterized protein 99.8 9.5E-19 3.2E-23 183.1 12.5 225 167-419 23-301 (331)
41 2v1u_A Cell division control p 99.8 6.8E-18 2.3E-22 178.4 18.9 223 167-415 15-276 (387)
42 1g8p_A Magnesium-chelatase 38 99.8 5.1E-18 1.7E-22 177.9 16.0 226 165-419 18-326 (350)
43 2chg_A Replication factor C sm 99.8 1E-17 3.6E-22 162.1 17.0 203 164-413 10-224 (226)
44 3hws_A ATP-dependent CLP prote 99.8 5.6E-18 1.9E-22 180.0 15.4 225 172-398 16-325 (363)
45 3bos_A Putative DNA replicatio 99.8 8.9E-18 3.1E-22 165.6 15.9 209 166-413 23-241 (242)
46 3u61_B DNA polymerase accessor 99.8 3E-18 1E-22 178.6 12.8 205 163-414 18-236 (324)
47 2z4s_A Chromosomal replication 99.8 8.1E-18 2.8E-22 183.8 16.4 220 165-414 99-331 (440)
48 3pvs_A Replication-associated 99.7 5E-18 1.7E-22 185.7 14.2 206 164-414 19-243 (447)
49 1l8q_A Chromosomal replication 99.7 1.1E-17 3.7E-22 174.7 15.6 199 165-394 5-214 (324)
50 1njg_A DNA polymerase III subu 99.7 6.4E-17 2.2E-21 158.2 18.4 209 164-412 16-248 (250)
51 4fcw_A Chaperone protein CLPB; 99.7 1.9E-17 6.4E-22 171.0 13.1 211 171-396 17-279 (311)
52 2qby_B CDC6 homolog 3, cell di 99.7 3E-17 1E-21 174.1 14.5 214 168-416 17-271 (384)
53 1sxj_A Activator 1 95 kDa subu 99.7 2.6E-17 9E-22 183.2 13.4 222 164-414 32-273 (516)
54 1in4_A RUVB, holliday junction 99.7 4.1E-16 1.4E-20 164.0 21.7 224 165-415 19-250 (334)
55 2qby_A CDC6 homolog 1, cell di 99.7 2.3E-16 7.8E-21 166.4 18.9 222 167-416 16-273 (386)
56 1sxj_D Activator 1 41 kDa subu 99.7 2.5E-16 8.5E-21 165.1 18.3 211 164-413 30-261 (353)
57 1jbk_A CLPB protein; beta barr 99.7 1.9E-17 6.7E-22 156.5 8.8 158 166-354 17-194 (195)
58 1r6b_X CLPA protein; AAA+, N-t 99.7 2.6E-16 8.7E-21 182.8 20.0 221 166-416 181-434 (758)
59 1fnn_A CDC6P, cell division co 99.7 4.3E-16 1.5E-20 165.1 18.9 221 167-415 13-274 (389)
60 3pxg_A Negative regulator of g 99.7 1.9E-16 6.6E-21 174.2 14.4 207 165-415 174-406 (468)
61 1um8_A ATP-dependent CLP prote 99.7 2.2E-16 7.5E-21 168.4 14.4 237 172-410 22-360 (376)
62 3pxi_A Negative regulator of g 99.7 2.6E-16 9E-21 182.8 14.3 205 170-392 490-721 (758)
63 2chq_A Replication factor C sm 99.7 3.7E-16 1.3E-20 161.1 13.2 207 163-412 9-223 (319)
64 1r6b_X CLPA protein; AAA+, N-t 99.7 4.2E-16 1.4E-20 181.0 14.1 170 171-359 458-667 (758)
65 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.4E-16 8.2E-21 174.4 10.2 211 171-409 22-280 (500)
66 3pxi_A Negative regulator of g 99.6 8.6E-16 2.9E-20 178.5 15.2 190 165-399 174-389 (758)
67 2p65_A Hypothetical protein PF 99.6 3.3E-16 1.1E-20 147.9 9.3 151 167-346 18-187 (187)
68 1qvr_A CLPB protein; coiled co 99.6 5.8E-16 2E-20 182.2 12.8 202 166-398 165-395 (854)
69 3te6_A Regulatory protein SIR3 99.6 5E-16 1.7E-20 162.3 10.4 137 202-360 43-213 (318)
70 1sxj_B Activator 1 37 kDa subu 99.6 2.4E-15 8.3E-20 155.2 15.5 203 164-413 14-229 (323)
71 1jr3_A DNA polymerase III subu 99.6 6.8E-15 2.3E-19 155.3 19.0 204 164-412 9-241 (373)
72 2bjv_A PSP operon transcriptio 99.6 2.3E-15 7.9E-20 152.4 13.9 212 168-408 3-250 (265)
73 1iqp_A RFCS; clamp loader, ext 99.6 2E-15 7E-20 156.0 13.8 202 164-412 18-231 (327)
74 3f9v_A Minichromosome maintena 99.6 1E-16 3.6E-21 181.2 3.2 195 204-414 327-586 (595)
75 1qvr_A CLPB protein; coiled co 99.6 5.2E-15 1.8E-19 174.1 11.7 211 170-395 557-819 (854)
76 1ojl_A Transcriptional regulat 99.6 8.2E-15 2.8E-19 152.3 10.8 208 172-408 3-245 (304)
77 1sxj_C Activator 1 40 kDa subu 99.5 1E-14 3.4E-19 153.4 10.6 206 164-412 18-236 (340)
78 1sxj_E Activator 1 40 kDa subu 99.5 4.7E-14 1.6E-18 148.2 13.2 193 163-394 6-243 (354)
79 1w5s_A Origin recognition comp 99.5 1.5E-12 5.3E-17 138.9 18.9 227 168-414 19-292 (412)
80 3k1j_A LON protease, ATP-depen 99.4 5.9E-13 2E-17 150.8 13.5 224 164-414 34-374 (604)
81 3co5_A Putative two-component 99.4 1.2E-13 4.1E-18 127.4 3.9 112 172-323 5-116 (143)
82 1a5t_A Delta prime, HOLB; zinc 99.4 5.1E-12 1.7E-16 132.7 16.8 160 202-392 22-209 (334)
83 3n70_A Transport activator; si 99.4 9E-13 3.1E-17 121.7 9.6 112 172-323 2-116 (145)
84 3kw6_A 26S protease regulatory 99.4 1.7E-12 5.7E-17 107.6 9.5 74 343-416 1-74 (78)
85 2krk_A 26S protease regulatory 99.3 3.3E-12 1.1E-16 108.0 8.9 75 342-416 8-82 (86)
86 4akg_A Glutathione S-transfera 99.3 2.5E-11 8.6E-16 155.1 17.7 146 203-359 1266-1432(2695)
87 3cmw_A Protein RECA, recombina 99.2 8.3E-12 2.8E-16 153.5 10.2 150 164-323 1013-1218(1706)
88 3ec2_A DNA replication protein 99.2 1.8E-11 6.3E-16 116.4 9.0 134 165-324 4-144 (180)
89 3vlf_B 26S protease regulatory 99.2 2.4E-11 8.1E-16 103.2 8.6 71 346-416 2-72 (88)
90 2gno_A DNA polymerase III, gam 99.2 6.4E-11 2.2E-15 123.1 13.4 125 204-358 18-152 (305)
91 3aji_B S6C, proteasome (prosom 99.1 1.3E-10 4.5E-15 97.2 7.9 71 346-416 2-72 (83)
92 1ny5_A Transcriptional regulat 99.0 4.8E-10 1.7E-14 120.2 10.5 213 170-411 136-383 (387)
93 2w58_A DNAI, primosome compone 99.0 2.2E-10 7.7E-15 110.6 6.7 102 166-274 20-127 (202)
94 3f8t_A Predicted ATPase involv 99.0 1.2E-09 4E-14 118.7 12.1 214 173-414 215-482 (506)
95 2dzn_B 26S protease regulatory 99.0 1.6E-10 5.4E-15 96.6 3.1 69 348-416 1-69 (82)
96 2fna_A Conserved hypothetical 98.9 1E-07 3.5E-12 98.8 20.8 186 167-390 9-252 (357)
97 2kjq_A DNAA-related protein; s 98.9 3E-09 1E-13 98.8 7.5 59 203-275 35-96 (149)
98 3dzd_A Transcriptional regulat 98.8 4.8E-09 1.6E-13 111.7 8.5 199 171-395 129-361 (368)
99 2vhj_A Ntpase P4, P4; non- hyd 98.8 2.4E-09 8.2E-14 111.4 5.8 119 200-330 119-242 (331)
100 2qgz_A Helicase loader, putati 98.8 5.1E-09 1.7E-13 108.8 7.3 101 166-274 119-226 (308)
101 2qen_A Walker-type ATPase; unk 98.8 3.8E-07 1.3E-11 94.3 21.2 189 167-389 8-247 (350)
102 4akg_A Glutathione S-transfera 98.8 1.4E-07 4.7E-12 121.2 20.6 176 203-395 644-840 (2695)
103 1svm_A Large T antigen; AAA+ f 98.7 8E-09 2.8E-13 110.3 6.8 120 199-344 164-284 (377)
104 2r2a_A Uncharacterized protein 98.7 1.8E-08 6.2E-13 98.2 7.6 130 204-350 5-158 (199)
105 3cmu_A Protein RECA, recombina 98.4 2.4E-07 8.1E-12 115.6 8.4 104 200-303 1423-1553(2050)
106 1tue_A Replication protein E1; 98.4 7.8E-07 2.7E-11 86.8 8.6 33 201-233 55-87 (212)
107 3vkg_A Dynein heavy chain, cyt 98.4 9.3E-07 3.2E-11 114.4 11.7 144 204-358 1304-1469(3245)
108 1jr3_D DNA polymerase III, del 98.2 4.3E-06 1.5E-10 87.4 11.1 176 203-414 17-208 (343)
109 3vkg_A Dynein heavy chain, cyt 98.2 5.9E-06 2E-10 107.1 12.6 136 204-355 604-750 (3245)
110 1u0j_A DNA replication protein 98.1 7.3E-06 2.5E-10 83.1 9.9 28 203-230 103-130 (267)
111 2c9o_A RUVB-like 1; hexameric 98.1 7.5E-06 2.6E-10 89.3 10.0 127 263-414 296-436 (456)
112 1ye8_A Protein THEP1, hypothet 97.9 4.1E-05 1.4E-09 72.9 10.9 27 206-232 2-28 (178)
113 1n0w_A DNA repair protein RAD5 97.9 4.2E-05 1.4E-09 75.0 10.6 77 200-276 20-133 (243)
114 1xp8_A RECA protein, recombina 97.8 5.3E-05 1.8E-09 80.4 10.6 77 200-276 70-166 (366)
115 2cvh_A DNA repair and recombin 97.8 3E-05 1E-09 74.8 7.8 40 200-239 16-55 (220)
116 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00011 3.7E-09 71.2 10.9 38 200-237 19-59 (235)
117 2ehv_A Hypothetical protein PH 97.8 0.00018 6.2E-09 70.6 12.5 113 200-326 26-185 (251)
118 2zr9_A Protein RECA, recombina 97.8 4.4E-05 1.5E-09 80.5 8.3 77 200-276 57-153 (349)
119 3hr8_A Protein RECA; alpha and 97.8 7.5E-05 2.6E-09 78.9 10.0 77 200-276 57-153 (356)
120 2z43_A DNA repair and recombin 97.7 5.9E-05 2E-09 78.5 8.5 100 200-299 103-243 (324)
121 1z6t_A APAF-1, apoptotic prote 97.7 0.0008 2.7E-08 75.1 17.6 170 168-381 121-322 (591)
122 1u94_A RECA protein, recombina 97.6 8E-05 2.7E-09 78.7 8.1 77 200-276 59-155 (356)
123 4a74_A DNA repair and recombin 97.6 0.00016 5.6E-09 70.0 9.5 40 200-239 21-69 (231)
124 3cmu_A Protein RECA, recombina 97.6 6.9E-05 2.3E-09 93.9 8.1 77 200-276 1077-1173(2050)
125 2r8r_A Sensor protein; KDPD, P 97.6 0.0013 4.3E-08 65.1 15.5 161 205-396 7-209 (228)
126 1qhx_A CPT, protein (chloramph 97.5 4.9E-05 1.7E-09 71.1 4.3 37 204-240 3-39 (178)
127 1v5w_A DMC1, meiotic recombina 97.5 0.0002 6.9E-09 75.1 9.4 100 200-299 118-259 (343)
128 2dr3_A UPF0273 protein PH0284; 97.5 0.00046 1.6E-08 67.5 11.0 40 200-239 19-61 (247)
129 3sfz_A APAF-1, apoptotic pepti 97.5 0.0011 3.8E-08 79.8 16.4 170 168-381 121-322 (1249)
130 3trf_A Shikimate kinase, SK; a 97.4 6.6E-05 2.3E-09 70.7 3.9 32 204-235 5-36 (185)
131 3io5_A Recombination and repai 97.4 0.00022 7.5E-09 74.0 8.0 72 206-277 30-126 (333)
132 3upu_A ATP-dependent DNA helic 97.4 0.00017 5.8E-09 78.6 7.2 54 163-228 16-69 (459)
133 2zts_A Putative uncharacterize 97.4 0.00061 2.1E-08 66.7 10.4 40 200-239 26-69 (251)
134 2p5t_B PEZT; postsegregational 97.4 0.00034 1.1E-08 69.9 8.6 59 178-240 10-68 (253)
135 2rhm_A Putative kinase; P-loop 97.4 9.3E-05 3.2E-09 69.9 4.1 34 201-234 2-35 (193)
136 3lda_A DNA repair protein RAD5 97.4 0.00051 1.7E-08 73.7 10.0 99 200-298 174-312 (400)
137 2orw_A Thymidine kinase; TMTK, 97.4 7.7E-05 2.6E-09 71.3 3.1 69 205-274 4-88 (184)
138 3vaa_A Shikimate kinase, SK; s 97.4 0.0001 3.4E-09 70.8 3.9 33 203-235 24-56 (199)
139 2i1q_A DNA repair and recombin 97.3 0.00024 8.3E-09 73.5 6.7 100 200-299 94-244 (322)
140 1pzn_A RAD51, DNA repair and r 97.3 0.00047 1.6E-08 72.5 9.0 40 200-239 127-175 (349)
141 3cmw_A Protein RECA, recombina 97.3 0.00034 1.2E-08 86.8 8.7 77 200-276 728-824 (1706)
142 1g41_A Heat shock protein HSLU 97.3 0.0016 5.4E-08 70.7 12.5 100 251-355 241-346 (444)
143 1nlf_A Regulatory protein REPA 97.2 0.0012 4.2E-08 66.6 10.6 28 200-227 26-53 (279)
144 2a5y_B CED-4; apoptosis; HET: 97.2 0.0039 1.3E-07 69.3 15.5 146 203-381 151-331 (549)
145 1gvn_B Zeta; postsegregational 97.2 0.00023 7.8E-09 72.8 4.9 60 178-241 11-70 (287)
146 2iyv_A Shikimate kinase, SK; t 97.2 0.00016 5.6E-09 68.0 3.4 30 206-235 4-33 (184)
147 3kb2_A SPBC2 prophage-derived 97.2 0.0002 7E-09 66.0 4.1 31 206-236 3-33 (173)
148 1zp6_A Hypothetical protein AT 97.2 0.0002 7E-09 67.6 3.8 40 201-240 6-45 (191)
149 3iij_A Coilin-interacting nucl 97.1 0.0002 6.8E-09 67.2 3.4 33 203-235 10-42 (180)
150 2cdn_A Adenylate kinase; phosp 97.1 0.00027 9.4E-09 67.6 4.3 34 202-235 18-51 (201)
151 1zuh_A Shikimate kinase; alpha 97.1 0.00024 8.1E-09 65.9 3.7 32 204-235 7-38 (168)
152 2r6a_A DNAB helicase, replicat 97.1 0.00085 2.9E-08 73.0 8.6 39 200-238 199-241 (454)
153 1y63_A LMAJ004144AAA protein; 97.1 0.00022 7.7E-09 67.5 3.5 33 203-235 9-42 (184)
154 1via_A Shikimate kinase; struc 97.1 0.00019 6.5E-09 67.1 2.9 29 206-234 6-34 (175)
155 1kag_A SKI, shikimate kinase I 97.1 0.00029 1E-08 65.4 3.8 30 204-233 4-33 (173)
156 1tev_A UMP-CMP kinase; ploop, 97.1 0.00024 8.4E-09 66.8 3.3 31 204-234 3-33 (196)
157 2b8t_A Thymidine kinase; deoxy 97.1 0.0013 4.4E-08 64.9 8.4 69 206-274 14-101 (223)
158 1qf9_A UMP/CMP kinase, protein 97.0 0.00032 1.1E-08 65.9 3.7 33 203-235 5-37 (194)
159 2ze6_A Isopentenyl transferase 97.0 0.00036 1.2E-08 69.9 4.1 33 206-238 3-35 (253)
160 2c95_A Adenylate kinase 1; tra 97.0 0.00032 1.1E-08 66.3 3.4 33 203-235 8-40 (196)
161 3t61_A Gluconokinase; PSI-biol 97.0 0.00041 1.4E-08 66.4 4.1 31 204-234 18-48 (202)
162 3lw7_A Adenylate kinase relate 97.0 0.0003 1E-08 64.6 2.9 29 206-235 3-31 (179)
163 2iut_A DNA translocase FTSK; n 97.0 0.0066 2.2E-07 67.7 14.1 74 264-355 345-420 (574)
164 1ly1_A Polynucleotide kinase; 97.0 0.00032 1.1E-08 65.2 3.1 30 204-233 2-32 (181)
165 3be4_A Adenylate kinase; malar 97.0 0.00033 1.1E-08 68.1 3.3 32 204-235 5-36 (217)
166 3umf_A Adenylate kinase; rossm 97.0 0.00041 1.4E-08 68.2 3.9 39 201-241 26-64 (217)
167 1aky_A Adenylate kinase; ATP:A 97.0 0.00036 1.2E-08 67.8 3.4 33 203-235 3-35 (220)
168 1zd8_A GTP:AMP phosphotransfer 97.0 0.00034 1.2E-08 68.4 3.3 34 202-235 5-38 (227)
169 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0014 4.6E-08 65.8 7.7 37 204-240 4-43 (260)
170 2vli_A Antibiotic resistance p 96.9 0.0004 1.4E-08 65.0 3.4 30 204-233 5-34 (183)
171 3dl0_A Adenylate kinase; phosp 96.9 0.00041 1.4E-08 67.0 3.6 30 206-235 2-31 (216)
172 2bwj_A Adenylate kinase 5; pho 96.9 0.00038 1.3E-08 65.9 3.2 33 203-235 11-43 (199)
173 1e6c_A Shikimate kinase; phosp 96.9 0.00036 1.2E-08 64.6 2.9 30 205-234 3-32 (173)
174 2q6t_A DNAB replication FORK h 96.9 0.002 6.8E-08 69.8 9.0 39 200-238 196-238 (444)
175 3cm0_A Adenylate kinase; ATP-b 96.9 0.00046 1.6E-08 64.8 3.4 31 204-234 4-34 (186)
176 3fb4_A Adenylate kinase; psych 96.9 0.00045 1.6E-08 66.6 3.5 30 206-235 2-31 (216)
177 1ukz_A Uridylate kinase; trans 96.9 0.00048 1.6E-08 65.8 3.5 33 203-235 14-46 (203)
178 2i3b_A HCR-ntpase, human cance 96.9 0.00025 8.7E-09 68.1 1.5 23 206-228 3-25 (189)
179 3tlx_A Adenylate kinase 2; str 96.9 0.00047 1.6E-08 68.6 3.5 33 203-235 28-60 (243)
180 3bh0_A DNAB-like replicative h 96.9 0.0024 8.1E-08 66.1 8.9 39 200-238 64-105 (315)
181 1kht_A Adenylate kinase; phosp 96.9 0.00039 1.3E-08 65.3 2.6 25 205-229 4-28 (192)
182 2pt5_A Shikimate kinase, SK; a 96.9 0.00052 1.8E-08 63.3 3.4 30 206-235 2-31 (168)
183 1zak_A Adenylate kinase; ATP:A 96.9 0.00037 1.3E-08 67.8 2.5 32 203-234 4-35 (222)
184 2ius_A DNA translocase FTSK; n 96.8 0.0078 2.7E-07 66.4 13.2 75 263-355 297-374 (512)
185 2pez_A Bifunctional 3'-phospho 96.8 0.00094 3.2E-08 62.6 5.0 37 203-239 4-43 (179)
186 1ak2_A Adenylate kinase isoenz 96.8 0.00056 1.9E-08 67.2 3.5 32 204-235 16-47 (233)
187 3dm5_A SRP54, signal recogniti 96.8 0.01 3.4E-07 64.3 13.3 70 203-272 99-192 (443)
188 1knq_A Gluconate kinase; ALFA/ 96.8 0.00073 2.5E-08 62.9 3.7 35 204-240 8-42 (175)
189 4eun_A Thermoresistant glucoki 96.7 0.00093 3.2E-08 64.0 4.2 36 203-240 28-63 (200)
190 1g5t_A COB(I)alamin adenosyltr 96.7 0.0067 2.3E-07 58.5 9.8 114 206-342 30-177 (196)
191 1e4v_A Adenylate kinase; trans 96.7 0.00081 2.8E-08 65.1 3.4 30 206-235 2-31 (214)
192 3crm_A TRNA delta(2)-isopenten 96.7 0.00096 3.3E-08 69.4 4.1 38 203-240 4-41 (323)
193 3sr0_A Adenylate kinase; phosp 96.7 0.00093 3.2E-08 65.0 3.7 33 207-241 3-35 (206)
194 2pbr_A DTMP kinase, thymidylat 96.6 0.0014 4.7E-08 61.6 4.6 31 206-236 2-35 (195)
195 1vma_A Cell division protein F 96.6 0.007 2.4E-07 62.5 10.2 71 202-272 102-196 (306)
196 2fz4_A DNA repair protein RAD2 96.6 0.0043 1.5E-07 61.3 8.2 33 206-238 110-142 (237)
197 2wwf_A Thymidilate kinase, put 96.6 0.0013 4.5E-08 62.9 4.2 33 203-235 9-41 (212)
198 3jvv_A Twitching mobility prot 96.6 0.0015 5.1E-08 69.0 4.8 67 206-272 125-206 (356)
199 1nn5_A Similar to deoxythymidy 96.5 0.0015 5E-08 62.6 4.2 31 203-233 8-38 (215)
200 1cke_A CK, MSSA, protein (cyti 96.5 0.0015 5E-08 63.4 4.1 30 205-234 6-35 (227)
201 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.3E-08 62.0 4.1 33 204-236 4-37 (204)
202 3uie_A Adenylyl-sulfate kinase 96.5 0.0017 5.7E-08 62.2 4.3 37 203-239 24-63 (200)
203 2if2_A Dephospho-COA kinase; a 96.5 0.0011 3.7E-08 63.4 2.8 30 206-236 3-32 (204)
204 2eyu_A Twitching motility prot 96.5 0.0018 6.3E-08 65.2 4.6 69 203-272 24-108 (261)
205 3kl4_A SRP54, signal recogniti 96.5 0.015 5.1E-07 62.9 11.9 70 203-272 96-189 (433)
206 2ewv_A Twitching motility prot 96.4 0.0033 1.1E-07 66.6 6.5 72 201-272 133-219 (372)
207 2jaq_A Deoxyguanosine kinase; 96.4 0.0015 5.1E-08 61.9 3.4 29 206-234 2-30 (205)
208 1uj2_A Uridine-cytidine kinase 96.4 0.0019 6.3E-08 64.3 4.2 40 203-242 21-68 (252)
209 4gp7_A Metallophosphoesterase; 96.4 0.006 2.1E-07 56.9 7.5 21 203-223 8-28 (171)
210 2z0h_A DTMP kinase, thymidylat 96.4 0.0022 7.4E-08 60.5 4.5 30 207-236 3-35 (197)
211 1nks_A Adenylate kinase; therm 96.4 0.00099 3.4E-08 62.4 2.1 31 206-236 3-36 (194)
212 2xb4_A Adenylate kinase; ATP-b 96.4 0.0016 5.5E-08 63.6 3.6 29 206-234 2-30 (223)
213 1uf9_A TT1252 protein; P-loop, 96.4 0.0017 5.8E-08 61.6 3.7 30 204-234 8-37 (203)
214 2bbw_A Adenylate kinase 4, AK4 96.4 0.0023 7.9E-08 63.3 4.6 30 204-233 27-56 (246)
215 3ake_A Cytidylate kinase; CMP 96.4 0.0025 8.6E-08 60.6 4.7 30 206-235 4-33 (208)
216 3bgw_A DNAB-like replicative h 96.3 0.0075 2.6E-07 65.5 8.6 39 200-238 193-234 (444)
217 3e1s_A Exodeoxyribonuclease V, 96.3 0.0027 9.4E-08 71.2 5.3 32 205-236 205-239 (574)
218 1tf7_A KAIC; homohexamer, hexa 96.3 0.023 7.7E-07 62.8 12.6 96 200-297 277-404 (525)
219 1jjv_A Dephospho-COA kinase; P 96.3 0.0024 8.1E-08 61.1 4.0 29 205-234 3-31 (206)
220 1q57_A DNA primase/helicase; d 96.3 0.0084 2.9E-07 65.8 8.8 39 200-238 238-280 (503)
221 3r20_A Cytidylate kinase; stru 96.2 0.0026 8.9E-08 63.1 4.1 31 204-234 9-39 (233)
222 2plr_A DTMP kinase, probable t 96.2 0.0027 9.2E-08 60.5 4.0 28 204-231 4-31 (213)
223 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0024 8E-08 66.7 3.8 70 203-272 170-250 (330)
224 2grj_A Dephospho-COA kinase; T 96.2 0.0021 7.1E-08 61.8 3.0 31 205-235 13-43 (192)
225 3nwj_A ATSK2; P loop, shikimat 96.2 0.0023 7.7E-08 64.2 3.3 32 204-235 48-79 (250)
226 3foz_A TRNA delta(2)-isopenten 96.2 0.0028 9.5E-08 65.5 4.0 40 203-242 9-48 (316)
227 1tf7_A KAIC; homohexamer, hexa 96.2 0.026 9E-07 62.3 12.2 39 201-239 36-78 (525)
228 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0021 7.3E-08 67.6 3.1 30 205-234 25-54 (359)
229 3c8u_A Fructokinase; YP_612366 96.1 0.0036 1.2E-07 60.2 4.4 42 181-229 6-47 (208)
230 3a8t_A Adenylate isopentenyltr 96.1 0.0024 8.4E-08 66.7 3.3 37 204-240 40-76 (339)
231 1ltq_A Polynucleotide kinase; 96.1 0.0022 7.4E-08 65.2 2.5 30 204-233 2-32 (301)
232 2qt1_A Nicotinamide riboside k 96.0 0.0024 8.4E-08 61.1 2.6 33 203-235 20-53 (207)
233 2yvu_A Probable adenylyl-sulfa 96.0 0.0048 1.7E-07 58.0 4.4 35 203-237 12-49 (186)
234 2h92_A Cytidylate kinase; ross 96.0 0.0032 1.1E-07 60.7 3.2 32 204-235 3-34 (219)
235 3zvl_A Bifunctional polynucleo 96.0 0.0053 1.8E-07 66.0 5.2 36 203-240 257-292 (416)
236 1vht_A Dephospho-COA kinase; s 96.0 0.0035 1.2E-07 60.5 3.4 31 204-235 4-34 (218)
237 3tau_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 60.4 3.5 27 203-229 7-33 (208)
238 1rz3_A Hypothetical protein rb 96.0 0.012 4.2E-07 56.2 7.2 38 202-239 20-60 (201)
239 1m7g_A Adenylylsulfate kinase; 95.9 0.0038 1.3E-07 60.2 3.5 38 203-240 24-65 (211)
240 1q3t_A Cytidylate kinase; nucl 95.9 0.0049 1.7E-07 60.5 4.3 32 203-234 15-46 (236)
241 4e22_A Cytidylate kinase; P-lo 95.8 0.0053 1.8E-07 61.2 4.2 30 204-233 27-56 (252)
242 2qor_A Guanylate kinase; phosp 95.8 0.0047 1.6E-07 59.2 3.7 28 202-229 10-37 (204)
243 4a1f_A DNAB helicase, replicat 95.8 0.031 1.1E-06 58.4 10.1 39 200-238 42-83 (338)
244 2px0_A Flagellar biosynthesis 95.8 0.033 1.1E-06 57.1 10.1 37 203-239 104-144 (296)
245 2f6r_A COA synthase, bifunctio 95.8 0.0038 1.3E-07 63.4 3.1 31 204-235 75-105 (281)
246 1kgd_A CASK, peripheral plasma 95.8 0.0058 2E-07 57.4 3.9 26 204-229 5-30 (180)
247 2j41_A Guanylate kinase; GMP, 95.7 0.0056 1.9E-07 58.1 3.5 26 203-228 5-30 (207)
248 3exa_A TRNA delta(2)-isopenten 95.7 0.0054 1.8E-07 63.5 3.5 37 205-241 4-40 (322)
249 3d3q_A TRNA delta(2)-isopenten 95.6 0.0059 2E-07 63.9 3.7 34 205-238 8-41 (340)
250 2qmh_A HPR kinase/phosphorylas 95.6 0.0047 1.6E-07 59.9 2.5 32 204-236 34-65 (205)
251 2xxa_A Signal recognition part 95.5 0.054 1.8E-06 58.5 10.8 70 202-271 98-192 (433)
252 3fdi_A Uncharacterized protein 95.5 0.0082 2.8E-07 57.9 4.0 29 206-234 8-36 (201)
253 2bdt_A BH3686; alpha-beta prot 95.5 0.0074 2.5E-07 56.8 3.5 24 206-229 4-27 (189)
254 3asz_A Uridine kinase; cytidin 95.4 0.0071 2.4E-07 57.9 3.1 31 203-233 5-37 (211)
255 2j37_W Signal recognition part 95.4 0.04 1.4E-06 60.7 9.3 36 202-237 99-137 (504)
256 1zu4_A FTSY; GTPase, signal re 95.3 0.055 1.9E-06 56.0 9.8 38 201-238 102-142 (320)
257 3tr0_A Guanylate kinase, GMP k 95.3 0.01 3.5E-07 56.2 3.9 33 204-238 7-39 (205)
258 3b6e_A Interferon-induced heli 95.3 0.056 1.9E-06 51.1 9.2 23 205-227 49-71 (216)
259 3eph_A TRNA isopentenyltransfe 95.3 0.0089 3E-07 63.9 3.5 37 204-240 2-38 (409)
260 3nh6_A ATP-binding cassette SU 95.2 0.037 1.3E-06 57.0 8.0 27 202-228 78-104 (306)
261 1cr0_A DNA primase/helicase; R 95.2 0.017 5.7E-07 58.6 5.3 39 200-238 31-73 (296)
262 2oap_1 GSPE-2, type II secreti 95.2 0.012 4E-07 65.1 4.4 69 204-272 260-343 (511)
263 3a00_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 55.9 3.4 24 205-228 2-25 (186)
264 1ex7_A Guanylate kinase; subst 95.2 0.014 4.7E-07 55.8 4.3 25 205-229 2-26 (186)
265 1p9r_A General secretion pathw 95.0 0.06 2E-06 57.9 9.3 66 206-271 169-245 (418)
266 1j8m_F SRP54, signal recogniti 95.0 0.068 2.3E-06 54.7 9.3 36 204-239 98-136 (297)
267 2yhs_A FTSY, cell division pro 95.0 0.067 2.3E-06 58.6 9.7 28 201-228 290-317 (503)
268 1w4r_A Thymidine kinase; type 95.0 0.026 9.1E-07 54.3 5.5 69 204-274 20-103 (195)
269 3p32_A Probable GTPase RV1496/ 94.9 0.09 3.1E-06 55.0 10.2 33 204-236 79-114 (355)
270 2gxq_A Heat resistant RNA depe 94.9 0.07 2.4E-06 50.3 8.4 17 205-221 39-55 (207)
271 3gmt_A Adenylate kinase; ssgci 94.9 0.015 5.1E-07 57.5 3.7 30 206-235 10-39 (230)
272 1c9k_A COBU, adenosylcobinamid 94.9 0.015 5.2E-07 55.3 3.6 32 207-239 2-33 (180)
273 2lna_A AFG3-like protein 2; st 94.9 0.031 1.1E-06 47.9 5.1 59 33-92 13-76 (99)
274 1x6v_B Bifunctional 3'-phospho 94.9 0.02 6.7E-07 64.7 5.0 38 203-240 51-91 (630)
275 1lvg_A Guanylate kinase, GMP k 94.8 0.014 4.7E-07 55.9 3.2 25 204-228 4-28 (198)
276 4f4c_A Multidrug resistance pr 94.8 0.093 3.2E-06 64.4 11.1 29 201-229 441-469 (1321)
277 1htw_A HI0065; nucleotide-bind 94.8 0.021 7.2E-07 53.0 4.2 27 202-228 31-57 (158)
278 2jeo_A Uridine-cytidine kinase 94.7 0.015 5.2E-07 57.4 3.3 29 203-231 24-52 (245)
279 1vt4_I APAF-1 related killer D 94.7 0.045 1.5E-06 65.0 7.7 24 204-227 150-173 (1221)
280 3qf4_B Uncharacterized ABC tra 94.6 0.11 3.7E-06 58.4 10.4 28 201-228 378-405 (598)
281 4a82_A Cystic fibrosis transme 94.6 0.088 3E-06 58.8 9.7 27 202-228 365-391 (578)
282 3thx_B DNA mismatch repair pro 94.6 0.11 3.6E-06 61.4 10.6 25 202-226 671-695 (918)
283 3lnc_A Guanylate kinase, GMP k 94.6 0.011 3.9E-07 57.6 2.1 26 203-228 26-52 (231)
284 3ney_A 55 kDa erythrocyte memb 94.6 0.021 7.1E-07 55.1 3.9 27 203-229 18-44 (197)
285 2gza_A Type IV secretion syste 94.6 0.026 9E-07 59.4 5.0 71 202-272 173-262 (361)
286 4b3f_X DNA-binding protein smu 94.6 0.05 1.7E-06 61.6 7.6 33 206-238 207-242 (646)
287 1ls1_A Signal recognition part 94.6 0.082 2.8E-06 53.9 8.5 70 203-272 97-190 (295)
288 1z6g_A Guanylate kinase; struc 94.6 0.019 6.6E-07 55.7 3.6 26 203-228 22-47 (218)
289 1znw_A Guanylate kinase, GMP k 94.5 0.022 7.6E-07 54.6 3.9 27 203-229 19-45 (207)
290 3b9q_A Chloroplast SRP recepto 94.4 0.035 1.2E-06 57.0 5.3 28 201-228 97-124 (302)
291 3hdt_A Putative kinase; struct 94.4 0.02 6.8E-07 56.3 3.3 30 205-234 15-44 (223)
292 1odf_A YGR205W, hypothetical 3 94.4 0.05 1.7E-06 55.5 6.3 28 202-229 29-56 (290)
293 2v9p_A Replication protein E1; 94.4 0.025 8.5E-07 58.3 4.0 29 200-228 122-150 (305)
294 3e70_C DPA, signal recognition 94.4 0.15 5.1E-06 52.9 10.0 27 202-228 127-153 (328)
295 2axn_A 6-phosphofructo-2-kinas 94.3 0.025 8.5E-07 62.6 4.2 29 203-231 34-62 (520)
296 1a7j_A Phosphoribulokinase; tr 94.3 0.018 6E-07 58.9 2.8 39 204-242 5-46 (290)
297 1gtv_A TMK, thymidylate kinase 94.3 0.011 3.9E-07 56.3 1.2 24 206-229 2-25 (214)
298 2og2_A Putative signal recogni 94.2 0.044 1.5E-06 57.7 5.5 28 201-228 154-181 (359)
299 4eaq_A DTMP kinase, thymidylat 94.1 0.03 1E-06 54.9 3.9 31 204-234 26-58 (229)
300 1vec_A ATP-dependent RNA helic 94.1 0.11 3.9E-06 48.9 7.7 18 205-222 41-58 (206)
301 1s96_A Guanylate kinase, GMP k 94.0 0.032 1.1E-06 54.6 3.8 28 202-229 14-41 (219)
302 3iuy_A Probable ATP-dependent 94.0 0.11 3.9E-06 49.9 7.8 55 165-221 16-74 (228)
303 3qf4_A ABC transporter, ATP-bi 94.0 0.12 4.2E-06 57.8 9.0 27 202-228 367-393 (587)
304 2ffh_A Protein (FFH); SRP54, s 94.0 0.2 6.9E-06 53.9 10.3 36 203-238 97-135 (425)
305 2pl3_A Probable ATP-dependent 93.9 0.16 5.6E-06 49.1 8.7 53 167-221 24-79 (236)
306 3thx_A DNA mismatch repair pro 93.8 0.35 1.2E-05 57.1 12.7 23 204-226 662-684 (934)
307 1sq5_A Pantothenate kinase; P- 93.7 0.031 1.1E-06 57.3 3.3 27 203-229 79-105 (308)
308 3cr8_A Sulfate adenylyltranfer 93.7 0.066 2.3E-06 59.6 6.0 38 203-240 368-409 (552)
309 1m8p_A Sulfate adenylyltransfe 93.7 0.041 1.4E-06 61.6 4.3 36 203-238 395-434 (573)
310 3tqf_A HPR(Ser) kinase; transf 93.6 0.043 1.5E-06 52.0 3.7 29 204-233 16-44 (181)
311 4i1u_A Dephospho-COA kinase; s 93.6 0.041 1.4E-06 53.6 3.7 31 205-236 10-40 (210)
312 1np6_A Molybdopterin-guanine d 93.4 0.046 1.6E-06 51.5 3.7 26 203-228 5-30 (174)
313 2ocp_A DGK, deoxyguanosine kin 93.4 0.047 1.6E-06 53.5 3.8 26 204-229 2-27 (241)
314 3tqc_A Pantothenate kinase; bi 93.4 0.072 2.5E-06 55.2 5.3 28 202-229 90-117 (321)
315 3lxx_A GTPase IMAP family memb 93.4 0.19 6.7E-06 48.8 8.3 24 204-227 29-52 (239)
316 2j9r_A Thymidine kinase; TK1, 93.3 0.12 4.1E-06 50.4 6.5 67 206-274 30-113 (214)
317 3def_A T7I23.11 protein; chlor 93.3 0.26 8.9E-06 48.9 9.2 25 204-228 36-60 (262)
318 3aez_A Pantothenate kinase; tr 93.2 0.048 1.7E-06 56.2 3.8 27 202-228 88-114 (312)
319 1p5z_B DCK, deoxycytidine kina 93.2 0.022 7.4E-07 56.8 1.1 26 203-228 23-48 (263)
320 1bif_A 6-phosphofructo-2-kinas 93.2 0.033 1.1E-06 60.6 2.6 30 203-232 38-67 (469)
321 2qm8_A GTPase/ATPase; G protei 93.1 0.18 6.1E-06 52.4 7.9 26 203-228 54-79 (337)
322 1sky_E F1-ATPase, F1-ATP synth 93.1 0.061 2.1E-06 58.5 4.4 24 205-228 152-175 (473)
323 1wb9_A DNA mismatch repair pro 93.0 0.48 1.6E-05 55.0 12.1 25 203-227 606-630 (800)
324 1rj9_A FTSY, signal recognitio 93.0 0.057 1.9E-06 55.5 3.8 26 203-228 101-126 (304)
325 1g8f_A Sulfate adenylyltransfe 93.0 0.099 3.4E-06 57.6 6.0 27 204-230 395-421 (511)
326 3fe2_A Probable ATP-dependent 92.9 0.26 8.8E-06 48.0 8.4 56 165-222 26-84 (242)
327 1xjc_A MOBB protein homolog; s 92.8 0.065 2.2E-06 50.3 3.6 33 204-236 4-39 (169)
328 2v3c_C SRP54, signal recogniti 92.7 0.086 2.9E-06 56.9 4.9 36 203-238 98-136 (432)
329 3kta_A Chromosome segregation 92.7 0.073 2.5E-06 49.4 3.8 24 206-229 28-51 (182)
330 3tif_A Uncharacterized ABC tra 92.6 0.045 1.5E-06 54.0 2.4 26 203-228 30-55 (235)
331 2pcj_A ABC transporter, lipopr 92.6 0.041 1.4E-06 53.9 2.0 26 203-228 29-54 (224)
332 3b85_A Phosphate starvation-in 92.6 0.046 1.6E-06 53.0 2.3 24 204-227 22-45 (208)
333 2cbz_A Multidrug resistance-as 92.6 0.046 1.6E-06 54.0 2.4 26 203-228 30-55 (237)
334 2onk_A Molybdate/tungstate ABC 92.5 0.054 1.8E-06 53.7 2.8 27 201-228 22-48 (240)
335 2gj8_A MNME, tRNA modification 92.5 0.21 7.1E-06 45.9 6.6 23 205-227 5-27 (172)
336 2p67_A LAO/AO transport system 92.4 0.28 9.7E-06 50.9 8.2 26 203-228 55-80 (341)
337 2ged_A SR-beta, signal recogni 92.3 0.17 5.9E-06 46.8 5.9 26 203-228 47-72 (193)
338 2gk6_A Regulator of nonsense t 92.3 0.12 4E-06 58.4 5.5 22 206-227 197-218 (624)
339 2f9l_A RAB11B, member RAS onco 92.2 0.074 2.5E-06 50.1 3.2 23 205-227 6-28 (199)
340 4edh_A DTMP kinase, thymidylat 92.2 0.13 4.4E-06 50.0 5.0 32 205-236 7-41 (213)
341 4f4c_A Multidrug resistance pr 92.2 0.28 9.6E-06 60.2 9.1 26 203-228 1104-1129(1321)
342 1b0u_A Histidine permease; ABC 92.1 0.055 1.9E-06 54.3 2.4 26 203-228 31-56 (262)
343 1oix_A RAS-related protein RAB 92.1 0.072 2.5E-06 50.0 3.0 23 206-228 31-53 (191)
344 2www_A Methylmalonic aciduria 92.1 0.2 6.9E-06 52.3 6.7 25 204-228 74-98 (349)
345 1mv5_A LMRA, multidrug resista 92.1 0.056 1.9E-06 53.5 2.3 26 203-228 27-52 (243)
346 1g6h_A High-affinity branched- 92.0 0.056 1.9E-06 54.0 2.2 25 204-228 33-57 (257)
347 3dz8_A RAS-related protein RAB 92.0 0.43 1.5E-05 44.2 8.3 24 205-228 24-47 (191)
348 2d2e_A SUFC protein; ABC-ATPas 92.0 0.067 2.3E-06 53.2 2.7 25 203-227 28-52 (250)
349 2zu0_C Probable ATP-dependent 91.9 0.072 2.4E-06 53.6 2.9 25 203-227 45-69 (267)
350 2pze_A Cystic fibrosis transme 91.9 0.059 2E-06 52.9 2.2 26 203-228 33-58 (229)
351 1sgw_A Putative ABC transporte 91.9 0.055 1.9E-06 52.7 1.9 26 203-228 34-59 (214)
352 2ghi_A Transport protein; mult 91.9 0.063 2.2E-06 53.8 2.4 26 203-228 45-70 (260)
353 2ff7_A Alpha-hemolysin translo 91.8 0.061 2.1E-06 53.5 2.2 26 203-228 34-59 (247)
354 3lxw_A GTPase IMAP family memb 91.8 0.31 1.1E-05 48.0 7.4 24 204-227 21-44 (247)
355 2zj8_A DNA helicase, putative 91.8 0.61 2.1E-05 53.2 10.8 20 203-222 38-57 (720)
356 1lw7_A Transcriptional regulat 91.8 0.1 3.6E-06 54.6 4.1 27 204-230 170-196 (365)
357 3oiy_A Reverse gyrase helicase 91.8 0.13 4.6E-06 54.1 5.0 20 205-224 37-56 (414)
358 1ji0_A ABC transporter; ATP bi 91.8 0.062 2.1E-06 53.1 2.2 26 203-228 31-56 (240)
359 3sop_A Neuronal-specific septi 91.8 0.085 2.9E-06 53.2 3.2 23 206-228 4-26 (270)
360 3v9p_A DTMP kinase, thymidylat 91.8 0.12 3.9E-06 50.9 4.1 32 205-236 26-64 (227)
361 2dyk_A GTP-binding protein; GT 91.8 0.099 3.4E-06 46.6 3.4 22 206-227 3-24 (161)
362 2olj_A Amino acid ABC transpor 91.7 0.066 2.2E-06 53.9 2.4 26 203-228 49-74 (263)
363 1nrj_B SR-beta, signal recogni 91.7 0.11 3.7E-06 49.4 3.8 25 204-228 12-36 (218)
364 2ixe_A Antigen peptide transpo 91.7 0.068 2.3E-06 53.9 2.4 26 203-228 44-69 (271)
365 2f1r_A Molybdopterin-guanine d 91.7 0.066 2.2E-06 50.3 2.1 24 205-228 3-26 (171)
366 3lv8_A DTMP kinase, thymidylat 91.6 0.1 3.5E-06 51.7 3.6 28 204-231 27-57 (236)
367 3gfo_A Cobalt import ATP-bindi 91.6 0.065 2.2E-06 54.3 2.2 26 203-228 33-58 (275)
368 3g5u_A MCG1178, multidrug resi 91.6 0.32 1.1E-05 59.5 8.6 27 202-228 414-440 (1284)
369 1z2a_A RAS-related protein RAB 91.6 0.1 3.4E-06 46.9 3.2 23 205-227 6-28 (168)
370 2va8_A SSO2462, SKI2-type heli 91.6 0.78 2.7E-05 52.2 11.4 22 202-223 44-65 (715)
371 2qi9_C Vitamin B12 import ATP- 91.5 0.067 2.3E-06 53.3 2.2 26 203-228 25-50 (249)
372 3fvq_A Fe(3+) IONS import ATP- 91.5 0.079 2.7E-06 55.8 2.8 25 204-228 30-54 (359)
373 1vpl_A ABC transporter, ATP-bi 91.5 0.073 2.5E-06 53.3 2.4 26 203-228 40-65 (256)
374 2yz2_A Putative ABC transporte 91.4 0.074 2.5E-06 53.4 2.4 26 203-228 32-57 (266)
375 2gks_A Bifunctional SAT/APS ki 91.4 0.12 4E-06 57.6 4.0 35 204-238 372-409 (546)
376 4g1u_C Hemin import ATP-bindin 91.3 0.068 2.3E-06 53.8 2.0 26 203-228 36-61 (266)
377 2nq2_C Hypothetical ABC transp 91.3 0.073 2.5E-06 53.1 2.1 26 203-228 30-55 (253)
378 1kao_A RAP2A; GTP-binding prot 91.3 0.11 3.8E-06 46.3 3.2 23 205-227 4-26 (167)
379 2ihy_A ABC transporter, ATP-bi 91.2 0.075 2.6E-06 53.9 2.2 26 203-228 46-71 (279)
380 1w36_D RECD, exodeoxyribonucle 91.2 0.11 3.6E-06 58.6 3.6 23 205-227 165-187 (608)
381 2ce2_X GTPase HRAS; signaling 91.2 0.11 3.7E-06 46.2 3.1 23 206-228 5-27 (166)
382 2orv_A Thymidine kinase; TP4A 91.2 1.2 4E-05 44.0 10.6 67 205-274 20-102 (234)
383 2it1_A 362AA long hypothetical 91.2 0.092 3.1E-06 55.3 2.9 25 204-228 29-53 (362)
384 1z47_A CYSA, putative ABC-tran 91.2 0.088 3E-06 55.3 2.7 25 204-228 41-65 (355)
385 2yyz_A Sugar ABC transporter, 91.2 0.093 3.2E-06 55.2 2.9 25 204-228 29-53 (359)
386 3tmk_A Thymidylate kinase; pho 91.2 0.19 6.4E-06 49.0 4.9 30 204-233 5-34 (216)
387 3d31_A Sulfate/molybdate ABC t 91.0 0.083 2.8E-06 55.4 2.3 25 204-228 26-50 (348)
388 3rlf_A Maltose/maltodextrin im 91.0 0.097 3.3E-06 55.5 2.9 25 204-228 29-53 (381)
389 1svi_A GTP-binding protein YSX 91.0 0.08 2.7E-06 49.2 2.0 25 203-227 22-46 (195)
390 1v43_A Sugar-binding transport 91.0 0.098 3.3E-06 55.3 2.9 25 204-228 37-61 (372)
391 2xau_A PRE-mRNA-splicing facto 91.0 0.39 1.3E-05 55.6 8.1 24 204-227 109-132 (773)
392 1ek0_A Protein (GTP-binding pr 91.0 0.12 4.3E-06 46.2 3.2 24 205-228 4-27 (170)
393 1u8z_A RAS-related protein RAL 90.9 0.13 4.4E-06 45.9 3.2 23 205-227 5-27 (168)
394 2wji_A Ferrous iron transport 90.9 0.12 4.1E-06 47.0 3.0 22 206-227 5-26 (165)
395 1z0j_A RAB-22, RAS-related pro 90.9 0.13 4.4E-06 46.2 3.2 24 205-228 7-30 (170)
396 1g29_1 MALK, maltose transport 90.9 0.098 3.4E-06 55.3 2.7 25 204-228 29-53 (372)
397 1g16_A RAS-related protein SEC 90.8 0.13 4.4E-06 46.2 3.1 23 205-227 4-26 (170)
398 2zej_A Dardarin, leucine-rich 90.8 0.1 3.5E-06 48.4 2.5 21 206-226 4-24 (184)
399 1wms_A RAB-9, RAB9, RAS-relate 90.7 0.13 4.5E-06 46.6 3.2 23 205-227 8-30 (177)
400 1z08_A RAS-related protein RAB 90.7 0.13 4.6E-06 46.2 3.1 23 205-227 7-29 (170)
401 2nzj_A GTP-binding protein REM 90.6 0.13 4.4E-06 46.5 3.0 23 205-227 5-27 (175)
402 1nij_A Hypothetical protein YJ 90.6 0.26 9E-06 50.6 5.6 23 206-228 6-28 (318)
403 2wjy_A Regulator of nonsense t 90.6 0.21 7.3E-06 58.0 5.5 22 206-227 373-394 (800)
404 2pjz_A Hypothetical protein ST 90.5 0.095 3.2E-06 52.7 2.1 25 204-228 30-54 (263)
405 1r2q_A RAS-related protein RAB 90.5 0.14 4.9E-06 45.8 3.2 23 205-227 7-29 (170)
406 1upt_A ARL1, ADP-ribosylation 90.5 0.18 6.2E-06 45.3 3.9 24 204-227 7-30 (171)
407 1ky3_A GTP-binding protein YPT 90.5 0.14 4.9E-06 46.4 3.2 24 204-227 8-31 (182)
408 3vkw_A Replicase large subunit 90.5 0.1 3.5E-06 56.4 2.5 24 203-226 160-183 (446)
409 2wsm_A Hydrogenase expression/ 90.5 0.19 6.6E-06 47.8 4.2 26 204-229 30-55 (221)
410 2lkc_A Translation initiation 90.4 0.16 5.3E-06 46.2 3.4 24 203-226 7-30 (178)
411 1c1y_A RAS-related protein RAP 90.4 0.15 5.1E-06 45.6 3.2 22 206-227 5-26 (167)
412 2wjg_A FEOB, ferrous iron tran 90.4 0.12 4.2E-06 47.5 2.7 23 205-227 8-30 (188)
413 1oxx_K GLCV, glucose, ABC tran 90.4 0.084 2.9E-06 55.4 1.6 25 204-228 31-55 (353)
414 2erx_A GTP-binding protein DI- 90.4 0.13 4.3E-06 46.3 2.7 22 206-227 5-26 (172)
415 3bc1_A RAS-related protein RAB 90.3 0.15 5.2E-06 46.8 3.2 24 204-227 11-34 (195)
416 1r8s_A ADP-ribosylation factor 90.3 0.16 5.6E-06 45.4 3.3 22 206-227 2-23 (164)
417 3q85_A GTP-binding protein REM 90.2 0.15 5.1E-06 45.9 3.0 21 206-226 4-24 (169)
418 3szr_A Interferon-induced GTP- 90.2 0.56 1.9E-05 52.7 8.3 26 201-227 43-68 (608)
419 3eiq_A Eukaryotic initiation f 90.2 0.61 2.1E-05 48.5 8.2 55 166-222 38-95 (414)
420 2bbs_A Cystic fibrosis transme 90.1 0.11 3.8E-06 53.0 2.2 26 203-228 63-88 (290)
421 4ag6_A VIRB4 ATPase, type IV s 90.1 0.25 8.7E-06 52.0 5.1 25 203-227 34-58 (392)
422 2y8e_A RAB-protein 6, GH09086P 90.1 0.16 5.3E-06 46.1 3.1 23 205-227 15-37 (179)
423 3q72_A GTP-binding protein RAD 90.1 0.14 4.8E-06 45.9 2.7 21 206-226 4-24 (166)
424 3gd7_A Fusion complex of cysti 90.1 0.13 4.3E-06 54.8 2.8 25 203-227 46-70 (390)
425 2hxs_A RAB-26, RAS-related pro 90.1 0.15 5E-06 46.4 2.8 22 205-226 7-28 (178)
426 3iby_A Ferrous iron transport 90.0 0.37 1.3E-05 47.9 6.0 22 206-227 3-24 (256)
427 1z0f_A RAB14, member RAS oncog 90.0 0.17 5.7E-06 45.9 3.2 24 205-228 16-39 (179)
428 3t34_A Dynamin-related protein 90.0 1 3.4E-05 46.8 9.6 24 202-226 33-56 (360)
429 3ld9_A DTMP kinase, thymidylat 90.0 0.19 6.5E-06 49.3 3.7 31 204-234 21-55 (223)
430 2p5s_A RAS and EF-hand domain 90.0 0.18 6.2E-06 47.2 3.5 25 203-227 27-51 (199)
431 1ewq_A DNA mismatch repair pro 89.9 0.39 1.3E-05 55.5 6.8 24 204-227 576-599 (765)
432 2fn4_A P23, RAS-related protei 89.8 0.17 5.8E-06 45.9 3.0 23 205-227 10-32 (181)
433 1m7b_A RND3/RHOE small GTP-bin 89.8 0.17 5.8E-06 46.7 3.1 23 205-227 8-30 (184)
434 1oyw_A RECQ helicase, ATP-depe 89.8 0.5 1.7E-05 52.0 7.4 18 205-222 41-58 (523)
435 4dsu_A GTPase KRAS, isoform 2B 89.8 0.18 6E-06 46.2 3.2 24 205-228 5-28 (189)
436 2a9k_A RAS-related protein RAL 89.8 0.18 6.1E-06 46.0 3.2 23 205-227 19-41 (187)
437 2efe_B Small GTP-binding prote 89.7 0.18 6.1E-06 46.0 3.1 23 205-227 13-35 (181)
438 3clv_A RAB5 protein, putative; 89.7 0.21 7.2E-06 46.0 3.7 24 204-227 7-30 (208)
439 3con_A GTPase NRAS; structural 89.7 0.18 6.2E-06 46.6 3.2 24 205-228 22-45 (190)
440 2oil_A CATX-8, RAS-related pro 89.7 0.18 6.2E-06 46.7 3.2 23 205-227 26-48 (193)
441 2vp4_A Deoxynucleoside kinase; 89.7 0.18 6.1E-06 49.0 3.3 24 204-227 20-43 (230)
442 2bme_A RAB4A, RAS-related prot 89.6 0.18 6.1E-06 46.3 3.1 23 205-227 11-33 (186)
443 1yrb_A ATP(GTP)binding protein 89.6 0.34 1.2E-05 47.4 5.3 34 203-236 13-48 (262)
444 3t1o_A Gliding protein MGLA; G 89.6 0.19 6.3E-06 46.4 3.2 24 205-228 15-38 (198)
445 1f2t_A RAD50 ABC-ATPase; DNA d 89.5 0.21 7.1E-06 45.5 3.3 23 206-228 25-47 (149)
446 1dek_A Deoxynucleoside monopho 89.5 0.31 1E-05 48.4 4.8 27 206-232 3-29 (241)
447 2o8b_B DNA mismatch repair pro 89.4 1.2 4.1E-05 53.1 10.6 22 204-225 789-810 (1022)
448 2xzl_A ATP-dependent helicase 89.4 0.31 1.1E-05 56.6 5.5 31 206-236 377-411 (802)
449 3tw8_B RAS-related protein RAB 89.3 0.18 6.1E-06 45.8 2.8 23 204-226 9-31 (181)
450 3sqw_A ATP-dependent RNA helic 89.3 1.3 4.4E-05 49.0 10.4 57 164-220 13-76 (579)
451 2npi_A Protein CLP1; CLP1-PCF1 89.3 0.19 6.6E-06 54.6 3.5 26 203-228 137-162 (460)
452 2g6b_A RAS-related protein RAB 89.3 0.21 7E-06 45.5 3.2 24 204-227 10-33 (180)
453 1pui_A ENGB, probable GTP-bind 89.2 0.13 4.6E-06 48.4 1.9 25 203-227 25-49 (210)
454 1mh1_A RAC1; GTP-binding, GTPa 89.2 0.22 7.6E-06 45.4 3.4 23 205-227 6-28 (186)
455 3ly5_A ATP-dependent RNA helic 89.2 1 3.5E-05 44.5 8.5 18 205-222 92-109 (262)
456 1wp9_A ATP-dependent RNA helic 89.2 1.8 6.3E-05 45.2 11.0 33 206-238 25-61 (494)
457 2atv_A RERG, RAS-like estrogen 89.2 0.24 8E-06 46.2 3.6 24 204-227 28-51 (196)
458 3kkq_A RAS-related protein M-R 89.2 0.21 7.2E-06 45.7 3.2 23 205-227 19-41 (183)
459 2gf9_A RAS-related protein RAB 89.1 0.21 7.3E-06 46.2 3.2 23 205-227 23-45 (189)
460 2hf9_A Probable hydrogenase ni 89.1 0.24 8.2E-06 47.3 3.7 25 204-228 38-62 (226)
461 1ko7_A HPR kinase/phosphatase; 89.0 0.23 7.9E-06 51.2 3.6 29 204-233 144-172 (314)
462 1u0l_A Probable GTPase ENGC; p 89.0 0.24 8.3E-06 50.5 3.8 24 205-228 170-193 (301)
463 3ch4_B Pmkase, phosphomevalona 89.0 0.33 1.1E-05 46.9 4.5 30 201-230 8-37 (202)
464 4tmk_A Protein (thymidylate ki 89.0 0.2 6.9E-06 48.6 3.0 24 205-228 4-27 (213)
465 3tkl_A RAS-related protein RAB 88.9 0.22 7.6E-06 46.0 3.2 24 204-227 16-39 (196)
466 2cxx_A Probable GTP-binding pr 88.9 0.2 6.7E-06 46.1 2.8 22 206-227 3-24 (190)
467 3bwd_D RAC-like GTP-binding pr 88.9 0.23 7.8E-06 45.3 3.2 24 204-227 8-31 (182)
468 3b1v_A Ferrous iron uptake tra 88.9 0.53 1.8E-05 47.3 6.2 23 205-227 4-26 (272)
469 2p6r_A Afuhel308 helicase; pro 88.9 0.58 2E-05 53.2 7.3 18 205-222 41-58 (702)
470 3ice_A Transcription terminati 88.9 0.33 1.1E-05 51.6 4.7 26 203-228 173-198 (422)
471 2yv5_A YJEQ protein; hydrolase 88.8 0.34 1.2E-05 49.4 4.8 23 205-228 166-188 (302)
472 1m2o_B GTP-binding protein SAR 88.8 0.24 8.2E-06 46.2 3.3 23 205-227 24-46 (190)
473 2obl_A ESCN; ATPase, hydrolase 88.8 0.3 1E-05 51.0 4.4 28 204-231 71-98 (347)
474 1knx_A Probable HPR(Ser) kinas 88.7 0.22 7.7E-06 51.3 3.3 31 204-235 147-177 (312)
475 1x3s_A RAS-related protein RAB 88.7 0.24 8.1E-06 45.7 3.2 23 205-227 16-38 (195)
476 3tui_C Methionine import ATP-b 88.7 0.19 6.6E-06 52.9 2.9 26 203-228 53-78 (366)
477 3g5u_A MCG1178, multidrug resi 88.7 1.1 3.6E-05 54.9 9.7 26 203-228 1058-1083(1284)
478 2bov_A RAla, RAS-related prote 88.7 0.23 8E-06 46.2 3.2 23 205-227 15-37 (206)
479 3c5c_A RAS-like protein 12; GD 88.7 0.24 8.1E-06 46.1 3.2 23 205-227 22-44 (187)
480 3pqc_A Probable GTP-binding pr 88.7 0.19 6.4E-06 46.3 2.4 23 205-227 24-46 (195)
481 3k53_A Ferrous iron transport 88.6 0.2 7E-06 49.9 2.9 23 205-227 4-26 (271)
482 2dpy_A FLII, flagellum-specifi 88.6 0.39 1.3E-05 51.8 5.3 29 203-231 156-184 (438)
483 1moz_A ARL1, ADP-ribosylation 88.6 0.25 8.4E-06 45.2 3.2 24 203-226 17-40 (183)
484 2fg5_A RAB-22B, RAS-related pr 88.6 0.23 7.9E-06 46.2 3.0 23 205-227 24-46 (192)
485 2b6h_A ADP-ribosylation factor 88.6 0.3 1E-05 45.6 3.9 24 203-226 28-51 (192)
486 1vg8_A RAS-related protein RAB 88.6 0.24 8.2E-06 46.3 3.2 25 204-228 8-32 (207)
487 1zd9_A ADP-ribosylation factor 88.5 0.25 8.5E-06 45.8 3.2 23 205-227 23-45 (188)
488 3ihw_A Centg3; RAS, centaurin, 88.5 0.25 8.4E-06 45.9 3.1 22 206-227 22-43 (184)
489 3t5g_A GTP-binding protein RHE 88.4 0.24 8.3E-06 45.2 3.1 24 204-227 6-29 (181)
490 1z06_A RAS-related protein RAB 88.4 0.25 8.5E-06 45.7 3.2 23 205-227 21-43 (189)
491 3iev_A GTP-binding protein ERA 88.4 0.61 2.1E-05 47.6 6.3 21 207-227 13-33 (308)
492 3reg_A RHO-like small GTPase; 88.4 0.25 8.6E-06 45.9 3.2 23 205-227 24-46 (194)
493 3e2i_A Thymidine kinase; Zn-bi 88.4 0.43 1.5E-05 46.6 4.8 68 206-274 30-113 (219)
494 2iwr_A Centaurin gamma 1; ANK 88.3 0.19 6.5E-06 45.8 2.2 23 205-227 8-30 (178)
495 2qag_B Septin-6, protein NEDD5 88.3 0.21 7.3E-06 53.7 2.9 21 207-227 45-65 (427)
496 2a5j_A RAS-related protein RAB 88.3 0.26 8.9E-06 45.7 3.2 23 205-227 22-44 (191)
497 1zbd_A Rabphilin-3A; G protein 88.2 0.22 7.6E-06 46.6 2.7 23 205-227 9-31 (203)
498 3i8s_A Ferrous iron transport 88.2 0.73 2.5E-05 46.1 6.7 23 205-227 4-26 (274)
499 2bcg_Y Protein YP2, GTP-bindin 88.2 0.25 8.6E-06 46.3 3.1 23 205-227 9-31 (206)
500 4hlc_A DTMP kinase, thymidylat 88.2 0.38 1.3E-05 46.3 4.3 31 206-236 4-36 (205)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.1e-74 Score=636.96 Aligned_cols=412 Identities=33% Similarity=0.571 Sum_probs=341.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~- 243 (612)
.++++|+||+|.+++++.+++++.++++|..|..+|.+.|+|+||+||||||||++|+++|++++.||+.++++++.+.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~----~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
.+.+..+++.+|..|+..+||||||||+|.++.++. +.+++..+++++|+..|+++... .+++||+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~---------~~viVIaa 160 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK---------EGIIVMAA 160 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG---------GTEEEEEE
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC---------CCEEEEEe
Confidence 567788899999999999999999999999987653 34566778999999999986532 35999999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
||+++.+|++++|||||++.|.+++|+.++|.+|++.|+++.++..++++..++..|+|++|+||.++|++|++.|.+++
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~ 240 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG 240 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999998
Q ss_pred CCCccHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCc-cccee
Q 007214 400 HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGG-KETAI 478 (612)
Q Consensus 400 ~~~It~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~-~~~~~ 478 (612)
...|+.+|+.+|+++++... .+....+++++++.+||||+|||++++.+|+.++.+..+|.|+| .++|+
T Consensus 241 ~~~I~~~dl~~al~~v~~~~----------~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~ 310 (476)
T 2ce7_A 241 RDKITMKDFEEAIDRVIAGP----------ARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGY 310 (476)
T ss_dssp CSSBCHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---------
T ss_pred CCeecHHHHHHHHHHHhcCc----------cccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccce
Confidence 88999999999999876321 12234567778999999999999999999999999999999999 89999
Q ss_pred EEeeccccccccccCCHHHHHHHHHHHhhhHHHHHHhcCCCcCCCchhhHHHHHHHHHHHHhcccccccCcccccccccc
Q 007214 479 SVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGL 558 (612)
Q Consensus 479 t~~~p~e~~~~~~~~t~~~l~~~i~~~lgGraAE~l~~g~~~t~ga~~Dl~~At~~a~~mv~~~~~~~~g~~~~~~~~g~ 558 (612)
|.++|.++.+ +.|+.+|+++|+++|||||||+++||+ +||||+|||++||+||+.||++|||+ +++|+
T Consensus 311 ~~~~p~~~~~---~~~~~~l~~~i~~~l~Gr~ae~~~~g~-~~~ga~~Dl~~at~~a~~mv~~~gm~--------~~~g~ 378 (476)
T 2ce7_A 311 TLHLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVFGD-VTSGAANDIERATEIARNMVCQLGMS--------EELGP 378 (476)
T ss_dssp --------CC---SCBHHHHHHHHHHHTHHHHHHHHHHSS-CCGGGHHHHHHHHHHHHHHHHTSCCC--------TTTCS
T ss_pred EEEcCccccc---ccCHHHHHHHHHHHHhHHHHHhhhcCC-CCcccHHHHHHHHHHHHHHHHHhCCC--------CcCCc
Confidence 9999988753 469999999999999999999999995 99999999999999999999998654 34444
Q ss_pred cCCCCCCCCccccccCCCCCCCCCCccHHHHHHHHHHHHHHHHhhH--hhhhhhc
Q 007214 559 LDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~li~~~~--~~~~l~e 611 (612)
+.+.....+.|+|+++ ...++||++|+..||+||++||++|| +++||++
T Consensus 379 ~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 429 (476)
T 2ce7_A 379 LAWGKEEQEVFLGKEI----TRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRK 429 (476)
T ss_dssp CCCCC-----------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCCCccccccccc----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444456777653 34578999999999999999999998 8888875
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-71 Score=614.44 Aligned_cols=423 Identities=34% Similarity=0.563 Sum_probs=363.0
Q ss_pred hcccchhhhccccccCCcccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHH
Q 007214 145 NQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTL 224 (612)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAral 224 (612)
++.|++++++++++.. .++++|+||+|.+++++.+++++.++++|..|..+|.+.|+|+||+||||||||+||+++
T Consensus 9 ~~~~~~~~~~~~~~~~----~~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTE----APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp ---------CCEEECS----CCCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHH
T ss_pred CCCCCcccCcceeecc----CCCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 4578888888766642 378999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCC
Q 007214 225 AKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGD 299 (612)
Q Consensus 225 A~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~ 299 (612)
|++++.+++.++++++.+. .+.+..+++.+|+.++...|||+||||||.++.++.. .+++..+++++++.+|+++
T Consensus 85 a~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 85 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp HHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred HHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 9999999999999999877 4667788999999998888999999999999765432 3566778999999999986
Q ss_pred cccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCC
Q 007214 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379 (612)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~ 379 (612)
... ..++++++||+|+.||++++||||||++|.+++|+.++|.+||+.|+++.++..++++..++..++|+
T Consensus 165 ~~~---------~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~ 235 (499)
T 2dhr_A 165 EKD---------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGF 235 (499)
T ss_dssp CSS---------CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSC
T ss_pred ccC---------ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCC
Confidence 543 34899999999999999999999999999999999999999999999888888899999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccC
Q 007214 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFP 459 (612)
Q Consensus 380 sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp 459 (612)
+|+||+++|++|++.|.+++...|+.+|+.+|+++++... ++....+++++++.+||||+|||++++.+|
T Consensus 236 ~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~----------~~~~~~~~~~e~~~~a~~e~g~av~~~~l~ 305 (499)
T 2dhr_A 236 VGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLP----------AKKSLVLSPRDRRITAYHEAGHALAAHFLE 305 (499)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCS----------SSSCCCCCTTHHHHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhccc----------ccccchhhHHHHhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999988888999999999999976421 122345677789999999999999999999
Q ss_pred CccccceeeecCCcccceeEEeecc-ccccccccCCHHHHHHHHHHHhhhHHHHHHhcCCCcCCCchhhHHHHHHHHHHH
Q 007214 460 RFDWHAFSQLLPGGKETAISVFYPR-EDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREM 538 (612)
Q Consensus 460 ~~~~~~~~~i~~~~~~~~~t~~~p~-e~~~~~~~~t~~~l~~~i~~~lgGraAE~l~~g~~~t~ga~~Dl~~At~~a~~m 538 (612)
+.++.++.+|.|++.++|++. |. ++.+ +.|+.+++++|+++|||||||+++||+ +||||+|||++||+||+.|
T Consensus 306 ~~~~v~~~~i~pr~~~~g~~~--p~q~~~~---~~t~~~l~~~i~~~lgGr~ae~~~~g~-~~~ga~~Dl~~at~~a~~m 379 (499)
T 2dhr_A 306 HADGVHKVTIVPRGRALGFMM--PRREDML---HWSRKRLLDQIAVALAGRAAEEIVFDD-VTTGAENDFRQATELARRM 379 (499)
T ss_dssp SCCCCCCEESCCSSCTTCSSH--HHHTTCC---CCCHHHHHHHHHHHHHHHHHHHHHSCS-CCBCCCHHHHHHHHHHHHH
T ss_pred CCCeeeEEEeecCCCcCcccc--cchhhhh---ccCHHHHHHHHHHHhhhHhHHHhhhcc-cCcccHHHHHHHHHHHHHH
Confidence 999999999999999999887 77 5543 459999999999999999999999995 9999999999999999999
Q ss_pred HhcccccccCcccccccccccCCCCCCCCccccccCCCCCCCCCCccHHHHHHHHHHHHHHHHhhH--hhhhhhc
Q 007214 539 VISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 539 v~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~li~~~~--~~~~l~e 611 (612)
|++|||+ +++|++.+..... .|++ ++ . .++||++|+..||+||++||++|| +++||++
T Consensus 380 v~~~gm~--------~~~g~~~~~~~~~-~~~~-~~----~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~ 439 (499)
T 2dhr_A 380 ITEWGMH--------PEFGPVAYAVRED-TYLG-GY----D-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLE 439 (499)
T ss_dssp HTTSCCC--------SSSCSCCCCCCCC-CSSC-CC----C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC--------CCCCceeecCCCc-cccc-cc----c-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998655 3344444433232 5665 33 2 478999999999999999999998 8888875
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-51 Score=441.08 Aligned_cols=246 Identities=32% Similarity=0.523 Sum_probs=231.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.|+++|+||.|.+++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.||+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 467899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~----~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .|.+++.++.+|..|+..+||||||||+|++++++..+ +.+...++++||.+||++... .+|+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~---------~~V~v 290 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS---------KNIKI 290 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC---------CCEEE
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC---------CCeEE
Confidence 98 58899999999999999999999999999999876432 234567899999999997654 35999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (612)
++++..|+++||..|+++++.
T Consensus 371 r~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 371 RERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HTTCSBCCHHHHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999999864
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-50 Score=433.04 Aligned_cols=246 Identities=32% Similarity=0.532 Sum_probs=231.1
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
++.++++|+||.|.+++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 467899999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .+.+++.++.+|..|+..+||||||||+|+++++|.. ++.+...++++||.+||++... .+|+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~---------~~ViV 324 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR---------GDVKV 324 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS---------SSEEE
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC---------CCEEE
Confidence 88 5888999999999999999999999999999987643 2345678999999999987654 35999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (612)
++++..|+++||.+|++++..
T Consensus 405 r~~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 405 RERRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HTTCSCBCHHHHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHHHhC
Confidence 999999999999999998764
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-49 Score=431.11 Aligned_cols=246 Identities=32% Similarity=0.551 Sum_probs=230.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
++.|+++|+||.|.+++|+.|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 467899999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~----~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
+. .+.+++.++.+|..|+..+||||||||+|+++.+|... +.....+++++|.+||++... .+|+|
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~---------~~ViV 351 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR---------GNIKV 351 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT---------TTEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC---------CcEEE
Confidence 98 58899999999999999999999999999999876432 234567899999999987654 35999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+|||+|+.||+||+||||||++|+|++|+.++|.+||+.|+++.++..++|+..||+.|.||||+||+++|++|++.|+
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (612)
++++..|+++||.+|+++++.
T Consensus 432 r~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 432 RARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHTCSSBCHHHHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHHHhc
Confidence 999999999999999999874
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-49 Score=430.24 Aligned_cols=245 Identities=35% Similarity=0.588 Sum_probs=229.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.|+++|+||.|.+++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 367899999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
+. .+.+...++.+|..|+..+||||||||+|++++++.. .+.+...++++||.+||++.... +|+|
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---------~viv 323 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG---------QTKI 323 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT---------SSEE
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC---------CeEE
Confidence 88 5888999999999999999999999999999987643 23456778999999999976543 4899
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..+|..|.||||+||+++|++|++.|+
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (612)
++++..|+++||.+|++++.
T Consensus 404 r~~~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 404 RDDRDHINPDDLMKAVRKVA 423 (437)
T ss_dssp HTTCSSBCHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999875
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-49 Score=429.89 Aligned_cols=245 Identities=31% Similarity=0.528 Sum_probs=228.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.|+++|+||+|.+++|+.|.+.+. ++++|+.|..+|+++|+|||||||||||||++|+|+|++++.||+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 46789999999999999999998876 49999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~----~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .+.+++.++.+|..|+..+||||||||+|++++++... +.+...++++||.+||++.... +|+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~---------~ViV 323 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD---------RVKV 323 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC---------SSEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC---------CEEE
Confidence 88 58889999999999999999999999999999876432 3355678999999999976543 4899
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (612)
++++..|+++||.+|++++.
T Consensus 404 r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 404 RNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp HHTCSSBCHHHHHHHHHSCS
T ss_pred HcCCCCcCHHHHHHHHHHHh
Confidence 99999999999999998753
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-48 Score=423.56 Aligned_cols=245 Identities=32% Similarity=0.522 Sum_probs=229.1
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.|+++|+||.|.+++|+.|.+.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 467899999999999999999999885 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .+.+...++.+|..|+..+||||||||+|++++++.. ++.+..+++++||++||++.... +|+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~---------~v~v 314 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST---------NVKV 314 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC---------SEEE
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC---------CEEE
Confidence 88 5888999999999999999999999999999987632 34456789999999999976543 4999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeC-CCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIG-LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~-~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
|+|||+|+.|||||+||||||++|+|| +|+.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a 394 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRA 394 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCccHHHHHHHHHHHH
Q 007214 396 VRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 396 ~r~~~~~It~~dl~~Al~~~~ 416 (612)
+++++..|+++||.+|+.+++
T Consensus 395 ~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 395 VRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHTTCSSBCHHHHHHHHHHHS
T ss_pred HHCCCCCCCHHHHHHHHHHhh
Confidence 999999999999999998765
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.4e-44 Score=410.46 Aligned_cols=284 Identities=33% Similarity=0.534 Sum_probs=241.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
..++++|+||.|.+++++.|++++.+ +++|+.|..+|.++|+|||||||||||||+|||++|+++|.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 35679999999999999999999997 99999999999999999999999999999999999999999999999999988
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
. .+.++..++.+|+.|+.++||||||||||++++++... ++....++++|+.+|+++... .+|+||+||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~---------~~V~VIaaT 347 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---------AHVIVMAAT 347 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG---------GCEEEEEEC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc---------CCEEEEEec
Confidence 8 58889999999999999999999999999999876543 445677899999999997654 359999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCC
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 400 (612)
|+++.||++|+||||||++|+++.||.++|.+||+.|+++.++..++|+..||..|.||+|+||.++|++|++.|.++..
T Consensus 348 N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~ 427 (806)
T 3cf2_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred C-----------------CccHHHHHHHHHHHHHhccCcccCHHHHhhhhcchhhHHHhhhhHHHHHHHHHHhccCCccc
Q 007214 401 S-----------------KIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDW 463 (612)
Q Consensus 401 ~-----------------~It~~dl~~Al~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~ 463 (612)
. .|+.+|+..|+...... +..+ +....|++.|
T Consensus 428 ~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps--------------------------~~r~-----~~~~~p~v~w 476 (806)
T 3cf2_A 428 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS--------------------------ALRE-----TVVEVPQVTW 476 (806)
T ss_dssp HHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCC--------------------------CCCC-----CCCBCCCCCS
T ss_pred ccccccccccchhhhccceeeHHHHHHHHHhCCCc--------------------------cccc-----ccccCCCCCH
Confidence 1 23444444444322110 0000 1234678888
Q ss_pred cceeeecCCcccceeEEeeccccc
Q 007214 464 HAFSQLLPGGKETAISVFYPREDT 487 (612)
Q Consensus 464 ~~~~~i~~~~~~~~~t~~~p~e~~ 487 (612)
.+++++...+..+...+.+|..++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p 500 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHP 500 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCS
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCH
Confidence 888887777777766666776554
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.8e-43 Score=408.02 Aligned_cols=227 Identities=34% Similarity=0.568 Sum_probs=182.6
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.++++|+|+.|.+++|+.|++.+.+ +++|..|...|.++|+|+|||||||||||++|+|+|.+++.+|+.++++++.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 356789999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .+.+++.++.+|+.|++.+||||||||||+++++|.. ++....+++++||.+||++... .+|+|
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~---------~~V~v 619 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---------KNVFI 619 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS---------SSEEE
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC---------CCEEE
Confidence 88 5888999999999999999999999999999987642 2334567899999999997654 35999
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+|||+|+.||+|++||||||++|+|++||.++|.+||+.|+++.++..++|+..||+.|.||||+||+++|++|++.|+
T Consensus 620 i~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp ECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHH
T ss_pred EEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q 007214 397 RK 398 (612)
Q Consensus 397 r~ 398 (612)
++
T Consensus 700 r~ 701 (806)
T 3cf2_A 700 RE 701 (806)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2.4e-37 Score=313.38 Aligned_cols=244 Identities=36% Similarity=0.649 Sum_probs=217.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
+.++.+|+||+|.+++++.+.+++.++.+|..|...|.+.|+++||+||||||||++|+++|++++.|++.++++++...
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred -hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 244 -~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
.+.+...++.+|+.+....|+++||||+|.+...+.. +.......+++++..++++... .+++||+
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~vI~ 155 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN---------EGIIVIA 155 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS---------SCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC---------CCEEEEE
Confidence 4566778999999999989999999999999865432 2344567889999999986533 3589999
Q ss_pred ecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
|||+++.+|++++|||||++.+.+++|+.++|.+|++.+++..++.+++++..++..++||+++||.++|++|+..|.++
T Consensus 156 ~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp EESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHH
Q 007214 399 GHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 399 ~~~~It~~dl~~Al~~~~ 416 (612)
+...|+.+|+.+|++++.
T Consensus 236 ~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 236 NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp TCSSBCHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHh
Confidence 989999999999998864
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=318.70 Aligned_cols=243 Identities=31% Similarity=0.552 Sum_probs=200.4
Q ss_pred cCCcccccceecCcccHHHHHHH-HHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDEL-MIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~el-v~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.++++|+||.|.+++|+.|++. +..+.++..|..+++..|+|++|+||||||||+|++++|++++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35679999999999999999885 45689999999999999999999999999999999999999999999999999877
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
. .+.....++.+|+.++...||++|+||+|.++..+... .......+++++.+|++..... .++++++|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~---------~~i~ia~t 153 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ---------QVFIMAAT 153 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT---------CEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC---------CEEEEeec
Confidence 6 46667789999999988899999999999987544221 1122356789999999876543 48999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcC---CCCCccCCHHHHHHhc--CCCcHHHHHHHHHHHHHHH
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG---KQLAEDVNFEELVFRT--VGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~---~~l~~dvdl~~La~~t--~G~sgadL~~lv~~A~~~A 395 (612)
|+|+.||++++||||||+.|++++|+.++|.+||+.++++ .++..++++..+|..+ .||||+||.++|++|++.|
T Consensus 154 n~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a 233 (274)
T 2x8a_A 154 NRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICA 233 (274)
T ss_dssp SCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999854 3456789999999875 5999999999999999999
Q ss_pred HHhC-----------CCCccHHHHHHHHHHH
Q 007214 396 VRKG-----------HSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 396 ~r~~-----------~~~It~~dl~~Al~~~ 415 (612)
.++. ...|+++||.+|+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 234 LRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp HHHHC-----------CCBCHHHHHHHHTTC
T ss_pred HHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 8752 3369999999998764
No 13
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=8e-38 Score=312.57 Aligned_cols=164 Identities=25% Similarity=0.349 Sum_probs=118.6
Q ss_pred hhhcchhhHHHhhhhHHHHHHHHHHhccCCccccceeeecCCcccceeEEeeccccccccccCCHHHHHHHHHHHhhhHH
Q 007214 431 KCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRC 510 (612)
Q Consensus 431 ~~~~~~s~~~~~~~A~HEaGhAi~a~~lp~~~~~~~~~i~~~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~~~lgGra 510 (612)
+.+..+++++|+++|||||||||+|+++|+.+|+++++|+|+|.++|+|.++|.++.+ +.|+.+|+++|+++|||||
T Consensus 6 kk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~---~~tk~~l~~~i~v~LgGRa 82 (238)
T 2di4_A 6 GSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKH---IYDKKDLYNKILVLLGGRA 82 (238)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CC---CCBHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCccccc---ccCHHHHHHHHHHHHhHHH
Confidence 3346788999999999999999999999999999999999999999999999998753 5699999999999999999
Q ss_pred HHHHhcC-CCcCCCchhhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCCCccccccCCCCCCCCCCccHHHH
Q 007214 511 AERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELS 589 (612)
Q Consensus 511 AE~l~~g-~~~t~ga~~Dl~~At~~a~~mv~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 589 (612)
||+++|| +++||||+|||++||+||+.||++|||+ +.+|++.+...+. .|+| ++ ...++||++|+
T Consensus 83 AEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs--------~~lG~v~~~~~~~-~flg-~~----~~~~~~Se~ta 148 (238)
T 2di4_A 83 AEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMS--------DKVGPIAIRRVAN-PFLG-GM----TTAVDTSPDLL 148 (238)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCC--------TTTCSCCCCC----------------CCCSCCHHHH
T ss_pred HHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCC--------CCCCceeecCCcc-cccc-cc----ccccccCHHHH
Confidence 9999994 2599999999999999999999998655 3444444433333 5666 43 23578999999
Q ss_pred HHHHHHHHHHHHhhH--hhhhhhc
Q 007214 590 ELFTRELTRVIIKKK--NCFILNE 611 (612)
Q Consensus 590 ~~id~ev~~li~~~~--~~~~l~e 611 (612)
..||+||++||++|| ++.||++
T Consensus 149 ~~iD~Ev~~il~~ay~~a~~iL~~ 172 (238)
T 2di4_A 149 REIDEEVKRIITEQYEKAKAIVEE 172 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 8888875
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=7.4e-37 Score=318.08 Aligned_cols=242 Identities=32% Similarity=0.543 Sum_probs=212.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.++++|+||+|.+++++.|.+.+.+ ++.|..|..+|+.+++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 56789999999999999999999886 88999999999999999999999999999999999999999999999999876
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~----~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
. .+.....++.+|..|+...||||||||+|.+...+... .......+++|+..|++.... .+++||
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~---------~~v~vi 158 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---------KNVFII 158 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT---------SSEEEE
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC---------CCEEEE
Confidence 6 45666779999999999999999999999997654221 122345788999999976432 359999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
+|||+++.+|++++|||||+..+++++|+.++|.+|++.+++...+..++++..++..+.||+|+||.++|++|++.|.+
T Consensus 159 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 238 (301)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999998876
Q ss_pred hCC-------------------------CCccHHHHHHHHHH
Q 007214 398 KGH-------------------------SKIQQQDIVDVLDK 414 (612)
Q Consensus 398 ~~~-------------------------~~It~~dl~~Al~~ 414 (612)
+.. ..|+.+||..|+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~ 280 (301)
T 3cf0_A 239 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 280 (301)
T ss_dssp HHHHHHC--------------------CCCBCHHHHHHHHTT
T ss_pred HHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHH
Confidence 421 35788888888765
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=304.80 Aligned_cols=243 Identities=34% Similarity=0.611 Sum_probs=194.1
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-h
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E 244 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~ 244 (612)
++++|+|++|.+++|+.+++++.++..|..|...|...++++||+||||||||++|+++|++++.+++.++++++... .
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999998876 4
Q ss_pred hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 245 ~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-----~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
+.+...++.+|..+....|+||||||+|.+..++... +.+....++.++..+++.... .+++||+|
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~---------~~~~vi~~ 151 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT---------DHVIVLAS 151 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT---------CCEEEEEE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC---------CCEEEEec
Confidence 5667789999999999999999999999997654321 233456788999998875432 35899999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC--HHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN--FEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd--l~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
||.++.+|++++|||||+..+++++|+.++|.+|++.++....+..+.+ +..++..+.|++++||.++|++|+..|.+
T Consensus 152 tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~ 231 (262)
T 2qz4_A 152 TNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231 (262)
T ss_dssp ESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---
T ss_pred CCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987766554433 47899999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (612)
++...|+.+|+..|+.++..
T Consensus 232 ~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 232 EGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp -----CCBCCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcc
Confidence 88889999999999998753
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.5e-35 Score=301.15 Aligned_cols=245 Identities=33% Similarity=0.577 Sum_probs=221.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
..++.+|++++|.+++++.|.+.+.. +..+..|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 46678999999999999999888765 88999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~----~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
. .+.....++.+|..++...|+||||||+|.+.+++... .......+..++..+++.... .+++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~---------~~~~vI 160 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR---------GDVKII 160 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS---------SSEEEE
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC---------CCEEEE
Confidence 7 46677789999999999999999999999998765432 334567788888888775433 358999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
+|||.++.+|++++|++||+..+.++.|+.++|.+|++.+++...+..++++..++..+.|++++||.++|++|...|.+
T Consensus 161 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 161 GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240 (285)
T ss_dssp EECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDKQLL 417 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (612)
++...|+.+|+.+|+.+...
T Consensus 241 ~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 241 ELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp TTCSSBCHHHHHHHHHHHHH
T ss_pred hccCcCCHHHHHHHHHHHHh
Confidence 99999999999999998763
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=3.3e-35 Score=297.08 Aligned_cols=240 Identities=41% Similarity=0.728 Sum_probs=213.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
+.++.+|+|++|.++++..++++..++.++..+...+...|+|++|+||||||||+|++++|++++.+++.+++.++...
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 56789999999999999999999999989999999999999999999999999999999999999999999999887655
Q ss_pred -hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 244 -~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
.+.....++.+|+.+....|+++|+||+|.++.++.. ...+....+++++..|++.... ..+++++
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~---------~~~i~~a 159 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD---------TAIVVMA 159 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT---------CCEEEEE
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC---------CCEEEEE
Confidence 3455677899999998888999999999999765432 3455667889999999986543 2489999
Q ss_pred ecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
+||+|+.+|++++|++||++.++++.|+.++|.+||+.++++..+..++++..++..++|++++||.++|++|+..|.++
T Consensus 160 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999998
Q ss_pred CCCCccHHHHHHHH
Q 007214 399 GHSKIQQQDIVDVL 412 (612)
Q Consensus 399 ~~~~It~~dl~~Al 412 (612)
+...|+.+|+.+|+
T Consensus 240 ~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 GRRKITMKDLEEAA 253 (254)
T ss_dssp TCSSBCHHHHHHHT
T ss_pred cCCCcCHHHHHHHh
Confidence 88889999998875
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.8e-35 Score=306.95 Aligned_cols=224 Identities=29% Similarity=0.500 Sum_probs=196.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-CCCeeEEeccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFT 241 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g~~~i~vs~s~~~ 241 (612)
+.++++|+||+|.+++|+.|++.+.+ ++.|..|.. +..+++++|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 46789999999999999999998875 677777653 45678999999999999999999999999 8999999999988
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
.. .+.....++.+|..++..+||||||||+|.+.+++... .......+++++..|++.... ..+++||+|
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~--------~~~v~vI~a 155 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--------NDGILVLGA 155 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC--------CTTEEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc--------CCCEEEEEe
Confidence 77 46677889999999999999999999999998765443 344567889999999986532 245999999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
||+|+.+|++++| ||+..+++++|+.++|.+||+.+++..+.. .+.++..|++.|.||||+||.++|++|++.|.++
T Consensus 156 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 156 TNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp ESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999877653 5678999999999999999999999999998875
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7.2e-35 Score=322.26 Aligned_cols=227 Identities=35% Similarity=0.607 Sum_probs=206.2
Q ss_pred CcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~- 243 (612)
.+.+|++++|.+.+++.|.+.+.. +++|..|..+|..+|+++||+||||||||++|+++|++++.+|+.++|+++...
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999998876 899999999999999999999999999999999999999999999999998877
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (612)
.+.....++.+|..|....||||||||||.+.+++... .+.....+++|+..|++.... .+++||+|||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~---------~~v~vIaaTn~ 349 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---------AHVIVMAATNR 349 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT---------SCEEEEEEESC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC---------CceEEEEecCC
Confidence 56777789999999999999999999999998766433 444567889999999975433 35999999999
Q ss_pred CCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCC
Q 007214 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401 (612)
Q Consensus 323 p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~ 401 (612)
++.||++++|+|||++.+++++|+.++|.+||+.+++...+..++++..++..+.||+++||.++|++|++.|.++...
T Consensus 350 ~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428 (489)
T ss_dssp GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999988888899999999999999999999999999999987654
No 20
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=5.3e-34 Score=292.66 Aligned_cols=253 Identities=40% Similarity=0.706 Sum_probs=215.7
Q ss_pred ccchhhhccccccCCcccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHH
Q 007214 147 LFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
.+++.+++..++ ...++.+|+|++|.+++++.+++++.++.++..+...+...++|++|+||||||||+|++++|+
T Consensus 20 ~~~~~~~~~~~~----~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 20 AFSFTKSRARVL----TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp ------CCCCCB----CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccccccccccc----cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 344544443333 2347899999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEEecccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcc
Q 007214 227 ESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKE 301 (612)
Q Consensus 227 e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~----~~~~~~~~l~~LL~~ld~~~~ 301 (612)
.++.+++.+++.++... .+.....++.+|+.+....|+++|+||+|.++..+.. ...+....+++++.+|++...
T Consensus 96 ~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 99999999999887655 3455667889999998888999999999999765432 234556788999999987654
Q ss_pred cCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcH
Q 007214 302 RTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG 381 (612)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sg 381 (612)
. ..++++++||+|+.+|++++|++||++.++++.|+.++|.+||+.++++..+..++++..++..++|+++
T Consensus 176 ~---------~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~ 246 (278)
T 1iy2_A 176 D---------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG 246 (278)
T ss_dssp T---------CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred C---------CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCH
Confidence 3 2489999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 382 ADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 382 adL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+||+++|++|+..|.+++...|+.+|+.+|+
T Consensus 247 ~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 247 ADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9999999999999999888889999998875
No 21
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=5.2e-35 Score=306.83 Aligned_cols=225 Identities=28% Similarity=0.499 Sum_probs=193.9
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.++++|+||+|.+++|+.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 357889999999999999999998875 556655554 567889999999999999999999999999999999999987
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
.. .+.....++.+|..++...|+||||||+|.+.+++.. .........++++..+++.... ..+++||+|
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vi~a 160 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--------SQGVLVLGA 160 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS--------CCCEEEEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc--------CCceEEEEe
Confidence 77 5677888999999999999999999999999876532 2333456789999999986432 245999999
Q ss_pred cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
||+|+.||++++| ||+..+++++|+.++|.+||+.++.+.... .+.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 161 tn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 161 TNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp ESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred cCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999877643 5678999999999999999999999999999875
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.8e-34 Score=302.24 Aligned_cols=224 Identities=28% Similarity=0.501 Sum_probs=188.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.++++|+||+|.+++++.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 56789999999999999999988875 577777765 6678899999999999999999999999999999999999877
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
. .+.....++.+|..++...||||||||+|.+.+.+.. .........++|+..|++.... ..+++||+||
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vI~at 194 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--------SQGVLVLGAT 194 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CCEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc--------CCCeEEEeec
Confidence 6 4666778999999999999999999999999866433 2334466788999999876432 2359999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
|+++.||++++| ||+..+++++|+.++|.+||+.++...+.. .+.++..|+..|.||+|+||.++|++|++.|.++
T Consensus 195 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 195 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp SCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999877643 5678999999999999999999999999999875
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=2.8e-36 Score=306.86 Aligned_cols=244 Identities=35% Similarity=0.657 Sum_probs=211.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
+.++.+|++++|.+++++.+.+++.++..|..|..+|.+.++++||+||||||||++|+++|++++.|++.++++++...
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred -hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 244 -~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-----~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
.+.+...++.+|+.+....|+||||||+|.+..++.. .+....+.+++|+..+++.... ..+++||
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vi 155 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE--------NAPVIVL 155 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS--------CSCCEEE
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC--------CCCEEEE
Confidence 3445556788999999889999999999999765321 1222234567788777765332 2358999
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
+|||.++.+|++++|+|||+..++++.|+.++|.+||+.+++...+..++++..++..+.|++|+||.++|++|+..|.+
T Consensus 156 ~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 156 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp ECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred EecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877888899999999999999999999999999988
Q ss_pred hCCCCccHHHHHHHHHHH
Q 007214 398 KGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 398 ~~~~~It~~dl~~Al~~~ 415 (612)
++...|+.+|+.+|+.+.
T Consensus 236 ~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 236 NNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp SCCCSCCHHHHHTSCTTC
T ss_pred hccCCcCHHHHHHHHHHH
Confidence 888889999998887654
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.2e-32 Score=299.49 Aligned_cols=225 Identities=30% Similarity=0.509 Sum_probs=188.1
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-CCCeeEEecccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEF 240 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g~~~i~vs~s~~ 240 (612)
.+.++++|+||+|.+++++.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 356789999999999999999988764 667766653 35678999999999999999999999999 899999999998
Q ss_pred cch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 241 ~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
... .+.....++.+|..++...|+||||||+|.+.+++.. ........+++|+..|++.... ..+|+||+
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--------~~~v~vI~ 276 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--------NDGILVLG 276 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC--------CSSCEEEE
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC--------CCCEEEEe
Confidence 776 4555667999999999999999999999999776543 3344567889999999886432 24589999
Q ss_pred ecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 007214 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (612)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r 397 (612)
|||+|+.+|++++| ||+..+++++|+.++|.+||+.++...+.. .+.++..|+..|.||||+||.++|++|++.|++
T Consensus 277 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r 354 (444)
T 2zan_A 277 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354 (444)
T ss_dssp EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999876642 567899999999999999999999999998887
Q ss_pred h
Q 007214 398 K 398 (612)
Q Consensus 398 ~ 398 (612)
+
T Consensus 355 ~ 355 (444)
T 2zan_A 355 K 355 (444)
T ss_dssp H
T ss_pred H
Confidence 5
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.3e-31 Score=278.99 Aligned_cols=243 Identities=28% Similarity=0.455 Sum_probs=202.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.++.+|+|++|.+++++.|.+.+.+ +..|..|...+ ..++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 45678999999999999999988875 67777665553 67899999999999999999999999999999999999987
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
. .+.....++.+|..+....|+||||||+|.+...+.. .+......+++++..+++..... ..+++||+||
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~-------~~~v~vI~at 228 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS-------EDRILVVGAT 228 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C-------CCCEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC-------CCCEEEEEec
Confidence 7 4666778999999999999999999999999865432 23445677889999998765321 2458999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
|+++.+|++++| ||+..+++++|+.++|.+|++.++...... .+.++..++..+.||+++||.++|++|...+.++-
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999888665432 34568899999999999999999999999988743
Q ss_pred ------------CCCccHHHHHHHHHHHH
Q 007214 400 ------------HSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 400 ------------~~~It~~dl~~Al~~~~ 416 (612)
...|+.+|+..|+.+..
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 307 QTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp CC----------CCCBCHHHHHHHHHHHG
T ss_pred hhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 25699999999998764
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=8.8e-31 Score=270.19 Aligned_cols=242 Identities=26% Similarity=0.461 Sum_probs=198.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
+.++.+|++++|.+++++.|.+.+.. +.+|..|...+ .+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 56789999999999999999888765 55666665544 46789999999999999999999999999999999999877
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
. .+.+...++.+|..+....|+||||||+|.+...+... ........+.++..+++..... ...+++||++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~vi~~t 166 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP------DGDRIVVLAAT 166 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------CEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC------CCCcEEEEeec
Confidence 6 45667789999999999999999999999997654322 2223456788898888765421 12358999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC-CccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 399 (612)
|+++.+|++++| ||+..+++++|+.++|..|++.++..... ..+.++..++..+.|++++||.++|++|+..|.++.
T Consensus 167 n~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 167 NRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp SCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred CChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999988875443 234468899999999999999999999999998864
Q ss_pred C------------CCccHHHHHHHHHH
Q 007214 400 H------------SKIQQQDIVDVLDK 414 (612)
Q Consensus 400 ~------------~~It~~dl~~Al~~ 414 (612)
. ..|+.+|+..|+.+
T Consensus 245 ~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 245 NVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp C--------CCCCCCCCHHHHHHHTTS
T ss_pred hhhhcccccccccCCcCHHHHHHHHHH
Confidence 2 46899999888765
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=7.7e-33 Score=323.14 Aligned_cols=228 Identities=34% Similarity=0.563 Sum_probs=198.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.+.++|+|++|.+++|+.|.+++.+ ++.+..|..++..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 356789999999999999999998875 6778888888999999999999999999999999999999999999999998
Q ss_pred ch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCC----hhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD----PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 242 ~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~----~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
.. .+.....++.+|+.++...||||||||||.++..+.... .....++++||..|++.... .+++|
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~---------~~v~v 619 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---------KNVFI 619 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------CCBC
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc---------CCeEE
Confidence 77 467778899999999999999999999999987664332 23467889999999986543 35899
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
|+|||+++.||++++|||||++.|++++|+.++|.+||+.++++.++..++++..++..+.|||++||.++|++|+..|.
T Consensus 620 I~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~ 699 (806)
T 1ypw_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp CCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999998
Q ss_pred HhC
Q 007214 397 RKG 399 (612)
Q Consensus 397 r~~ 399 (612)
++.
T Consensus 700 ~~~ 702 (806)
T 1ypw_A 700 RES 702 (806)
T ss_dssp SCC
T ss_pred HHH
Confidence 875
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=9.7e-30 Score=273.51 Aligned_cols=242 Identities=26% Similarity=0.454 Sum_probs=194.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
..++.+|+||+|.+++++.|.+.+.. +..+..|...+ .+++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 56788999999999999988887764 45566665554 45789999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
. .+.....++.+|..++...|+||||||||.+...+.. ........++.|+..+++..... ..+|+||+||
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~v~vI~at 259 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG-------DDRVLVMGAT 259 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------CEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC-------CCCEEEEEec
Confidence 7 4566778999999999999999999999999765432 23335667788999888754321 2459999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh-
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK- 398 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~- 398 (612)
|+++.+|++++| ||+..++++.|+.++|.+||+.++...... .+.++..++..+.|+++++|.++++.|...+.++
T Consensus 260 n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 999999999999999999999888664332 3446889999999999999999999999999886
Q ss_pred -----------CCCCccHHHHHHHHHHH
Q 007214 399 -----------GHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 399 -----------~~~~It~~dl~~Al~~~ 415 (612)
....|+.+|+..++.+.
T Consensus 338 ~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 338 KPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp CCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 33568999999988763
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=1.5e-30 Score=269.83 Aligned_cols=183 Identities=19% Similarity=0.277 Sum_probs=138.4
Q ss_pred cCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hhhhHHHHHHHHHHH----hhcCCeEEEEccchh
Q 007214 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIA----RRNAPAFVFVDEIDA 273 (612)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~~~~~~ir~lF~~A----~~~~P~ILfIDEiD~ 273 (612)
.+.++|+++|||||||||||++|+++|++++.+|+.++++++... .+.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 367889999999999999999999999999999999999998776 466777899999988 577899999999999
Q ss_pred hhccCCCCCh---hHHHHHHHHHHHhcCCcccC--CcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHH
Q 007214 274 IAGRHARKDP---RRRATFEALIAQLDGDKERT--GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAK 348 (612)
Q Consensus 274 l~~~~~~~~~---~~~~~l~~LL~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~ 348 (612)
+++++.+... ......+.|+..||+..... +........+++||+|||+++.+|++++|||||++.+. .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 9875432221 23456688888888543111 10112234569999999999999999999999999887 57999
Q ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHH
Q 007214 349 QRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNL 387 (612)
Q Consensus 349 eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~l 387 (612)
+|.+|++.++.. .++++..++..+.||++++|..+
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHH
Confidence 999999988763 35778999999999999998743
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=1.6e-27 Score=278.21 Aligned_cols=230 Identities=36% Similarity=0.594 Sum_probs=206.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
..++++|+||+|.+++++.|.+.+.. +++|..|..++++++.++||+||||||||++|+++|++++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34578999999999999999999886 89999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 243 ~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~-~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
. .+.....++.+|+.+....|+++||||+|.+..++... .......+++|+..+++.... .++++|+||
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~---------~~v~vI~at 347 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---------AHVIVMAAT 347 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT---------SCCEEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc---------ccEEEeccc
Confidence 6 46677889999999999999999999999998765433 344566788899999986644 348999999
Q ss_pred CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCC
Q 007214 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (612)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 400 (612)
|+++.+|+++.++|||++.+.++.|+.++|.+|++.++....+..+.++..++..+.|++++|+..++++|+..+.++..
T Consensus 348 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp SCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999998887654
Q ss_pred CC
Q 007214 401 SK 402 (612)
Q Consensus 401 ~~ 402 (612)
..
T Consensus 428 ~~ 429 (806)
T 1ypw_A 428 DL 429 (806)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=7.7e-26 Score=248.29 Aligned_cols=202 Identities=21% Similarity=0.273 Sum_probs=142.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC--CCeeEEecccccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTD 242 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g--~~~i~vs~s~~~~ 242 (612)
.+...|++++|++++++.+.+++++++. |..+++++||+||||||||++|+++|++++ .+|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4567899999999999999998887654 355789999999999999999999999999 9999999999987
Q ss_pred hh-hhhHHHHHHHHHHH---hhcCCeEEEEccchhhhccCCCCChhH-H-------------------HHHHHHHHHhcC
Q 007214 243 SE-KSGAARINEMFSIA---RRNAPAFVFVDEIDAIAGRHARKDPRR-R-------------------ATFEALIAQLDG 298 (612)
Q Consensus 243 ~~-~~~~~~ir~lF~~A---~~~~P~ILfIDEiD~l~~~~~~~~~~~-~-------------------~~l~~LL~~ld~ 298 (612)
.+ +.... ++.+|..| +...||||||||+|++++++....... . ...+.++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 74 45554 99999999 788899999999999987664321100 0 112335555543
Q ss_pred CcccCCcccccccccEEEEEecCCCCCccccccCCCceeE--EEEeCCC--CHHHHHHHHHHHhcCCCCCccCCHHHHHH
Q 007214 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR--RLYIGLP--DAKQRVQIFDVHSAGKQLAEDVNFEELVF 374 (612)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~--~I~v~~P--d~~eR~~Il~~~l~~~~l~~dvdl~~La~ 374 (612)
.... ....++|++|||+++.+|++++||||||+ .+.++.| +.++|.+|++.+.. .|++.++.
T Consensus 183 ~~~~-------~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~ 248 (456)
T 2c9o_A 183 ERVE-------AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANA 248 (456)
T ss_dssp TTCC-------TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-
T ss_pred ccCC-------CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHH
Confidence 2111 12336666999999999999999999999 6677777 45788888875543 26889999
Q ss_pred hcCCCcHHHHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNE 390 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~ 390 (612)
.+.| |+||.++|+.
T Consensus 249 ~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 249 RPQG--GQDILSMMGQ 262 (456)
T ss_dssp ----------------
T ss_pred hCCC--hhHHHHHHhh
Confidence 9999 9999999975
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=3.1e-22 Score=212.04 Aligned_cols=219 Identities=19% Similarity=0.276 Sum_probs=164.7
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC--CCeeEEecccccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTD 242 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g--~~~i~vs~s~~~~ 242 (612)
.+..+|++++|++++++.+..+...+... ..+++++||+||||||||++|+++|++++ .|++.+++..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 44566999999999999988888777654 34568999999999999999999999987 4888888776432
Q ss_pred hh--------------------------------------------------hhhHHHHHHHHHHHhh---------cCC
Q 007214 243 SE--------------------------------------------------KSGAARINEMFSIARR---------NAP 263 (612)
Q Consensus 243 ~~--------------------------------------------------~~~~~~ir~lF~~A~~---------~~P 263 (612)
.. +.....++..+..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 21 1112345555554432 127
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec-----------CCCCCccccccC
Q 007214 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT-----------NRPDELDLEFVR 332 (612)
Q Consensus 264 ~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT-----------N~p~~LD~aLlr 332 (612)
+||||||+|.+. ...++.|+..++.... +++++++. |.+..+++++++
T Consensus 191 ~vl~IDEi~~l~----------~~~~~~L~~~le~~~~-----------~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s 249 (368)
T 3uk6_A 191 GVLFIDEVHMLD----------IESFSFLNRALESDMA-----------PVLIMATNRGITRIRGTSYQSPHGIPIDLLD 249 (368)
T ss_dssp CEEEEESGGGSB----------HHHHHHHHHHTTCTTC-----------CEEEEEESCSEEECBTSSCEEETTCCHHHHT
T ss_pred ceEEEhhccccC----------hHHHHHHHHHhhCcCC-----------CeeeeecccceeeeeccCCCCcccCCHHHHh
Confidence 899999999884 2356677777755322 24444443 357789999999
Q ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 333 pgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
||.. +.+++|+.+++.+|++.++...... .+..+..++..+.+.+++++.++++.|...|..++...|+.+|+.++
T Consensus 250 --R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a 326 (368)
T 3uk6_A 250 --RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRV 326 (368)
T ss_dssp --TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred --hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 9966 8999999999999999887643322 22347788888875799999999999999999999999999999999
Q ss_pred HHH
Q 007214 412 LDK 414 (612)
Q Consensus 412 l~~ 414 (612)
+..
T Consensus 327 ~~~ 329 (368)
T 3uk6_A 327 YSL 329 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=5.2e-22 Score=205.24 Aligned_cols=224 Identities=15% Similarity=0.139 Sum_probs=166.9
Q ss_pred ccc-ceecCcccHHHHHHHHHHhCCchhhhhcCCcc---CceEEEEcCCCChHHHHHHHHHHHc-------CCCeeEEec
Q 007214 169 MYK-EVVLGGDVWDLLDELMIYMGNPMQYYERGVQF---VRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFASG 237 (612)
Q Consensus 169 ~f~-dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~---p~gvLL~GPPGTGKT~LAralA~e~-------g~~~i~vs~ 237 (612)
.++ +++|++++|+.|.+++..+..+..+...|... +.++||+||||||||++|+++|+++ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 344 79999999999999998877677777776554 4569999999999999999999887 348999999
Q ss_pred ccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 238 AEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 238 s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
+++... .+.....+..+|..+ .++||||||+|.+.+.+.. +......++.|+..|+... .++++
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-~~~~~~~~~~Ll~~l~~~~-----------~~~~~ 172 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMENNR-----------DDLVV 172 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHHCT-----------TTCEE
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-ccccHHHHHHHHHHHhcCC-----------CCEEE
Confidence 998776 456666788888877 4689999999999754322 2234567788888887632 24788
Q ss_pred EEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccC-CHHHHHHh-------cCCCcHHH
Q 007214 317 ICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFR-------TVGFSGAD 383 (612)
Q Consensus 317 IaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~-------t~G~sgad 383 (612)
|++||.+. .++|+|++ ||+..++|++|+.+++.+|++.++......-+. .+..++.. ...-++++
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~ 250 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARS 250 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHH
Confidence 89988653 35799999 999999999999999999999988755432221 24445544 23346899
Q ss_pred HHHHHHHHHHHHHHh----CCCCccHHHHH
Q 007214 384 IRNLVNESGIMSVRK----GHSKIQQQDIV 409 (612)
Q Consensus 384 L~~lv~~A~~~A~r~----~~~~It~~dl~ 409 (612)
+.++++.|...+..+ ....++.+++.
T Consensus 251 l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 251 IRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 999999998766544 33556666654
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=6.4e-21 Score=199.87 Aligned_cols=223 Identities=16% Similarity=0.177 Sum_probs=168.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
+..+.+|++++|.+.+++.+...+...+.+ ...+.++||+||||||||++|+++|++++.+|+.++|+.+...
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~ 94 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS 94 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch
Confidence 455679999999999888888877755322 2356789999999999999999999999999999999876532
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC--------CcccccccccEE
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT--------GIDRFSLRQAVI 315 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~--------~~~~~~~~~~Vi 315 (612)
..+...+.. ...+++|||||+|.+. ....+.|+..++...... ....... .+++
T Consensus 95 -----~~~~~~~~~--~~~~~vl~lDEi~~l~----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (338)
T 3pfi_A 95 -----GDLAAILTN--LSEGDILFIDEIHRLS----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL-PKFT 156 (338)
T ss_dssp -----HHHHHHHHT--CCTTCEEEEETGGGCC----------HHHHHHHHHHHHTSCC---------CCCCCCCC-CCCE
T ss_pred -----hHHHHHHHh--ccCCCEEEEechhhcC----------HHHHHHHHHHHHhccchhhcccCccccceecCC-CCeE
Confidence 123334332 2457899999999884 235566777766543110 0000111 2589
Q ss_pred EEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007214 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~ 394 (612)
+|++||+...++++|++ ||+..+.+++|+.+++.++++.++...... .+..+..++..+.| +++++.++++.+...
T Consensus 157 ~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999887655432 22236677775555 778999999999888
Q ss_pred HHHhCCCCccHHHHHHHHHH
Q 007214 395 SVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 395 A~r~~~~~It~~dl~~Al~~ 414 (612)
|...+...|+.+++..++..
T Consensus 234 a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHH
T ss_pred HHhhcCCccCHHHHHHHHHH
Confidence 88888888999999888865
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=8.1e-20 Score=186.17 Aligned_cols=203 Identities=19% Similarity=0.249 Sum_probs=140.6
Q ss_pred ccceecCcccHHHHHH----HHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch--
Q 007214 170 YKEVVLGGDVWDLLDE----LMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-- 243 (612)
Q Consensus 170 f~dvvG~~e~k~~L~e----lv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-- 243 (612)
...++|.+...+.+.. ++..++ ..+...+.++||+||||||||++|+++|++++.+|+.+++++....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 4567777654333333 333333 2234678899999999999999999999999999999988763322
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (612)
.......++.+|..+....+++|||||+|.+.+.+..+.......++.|...+++.... ..+++||+|||.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~--------~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQ--------GRKLLIIGTTSRK 177 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCST--------TCEEEEEEEESCH
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCC--------CCCEEEEEecCCh
Confidence 22334568899999988889999999999997654433333445666666666654321 2458899999999
Q ss_pred CCccc-cccCCCceeEEEEeCCCCH-HHHHHHHHHHhcCCCCCccCCHHHHHHhcCCC----cHHHHHHHHHHHH
Q 007214 324 DELDL-EFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF----SGADIRNLVNESG 392 (612)
Q Consensus 324 ~~LD~-aLlrpgRFd~~I~v~~Pd~-~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~----sgadL~~lv~~A~ 392 (612)
+.+++ .+.+ ||+..+.+|+++. ++..+++.. ...+ .+.++..++..+.|+ +.+++.++++.|.
T Consensus 178 ~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 178 DVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp HHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred hhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 99988 5555 9999988876654 444444443 2233 344578899888887 5666767766543
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.82 E-value=1.3e-19 Score=188.20 Aligned_cols=225 Identities=17% Similarity=0.168 Sum_probs=162.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~ 243 (612)
+..+.+|++++|.+.+++.+...+...... ...+.++||+||||||||++|++++++++.+++.++|+.+...
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 345678999999998888887777654321 1346789999999999999999999999999999998877542
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc----CC---cccccccccEEE
Q 007214 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER----TG---IDRFSLRQAVIF 316 (612)
Q Consensus 244 ~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~----~~---~~~~~~~~~ViV 316 (612)
..+...|..+ ...+++|||||+|.+.. ...+.|+..++..... .+ ........++++
T Consensus 78 -----~~l~~~l~~~-~~~~~~l~lDEi~~l~~----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 78 -----GDLAAILANS-LEEGDILFIDEIHRLSR----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -----HHHHHHHTTT-CCTTCEEEETTTTSCCH----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -----HHHHHHHHHh-ccCCCEEEEECCccccc----------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 1222333221 24578999999998842 1334455555443210 00 000001135889
Q ss_pred EEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
|++||.+..+++++.+ ||+..+.+++|+.+++.++++.++...... .+..+..++..+.| +++++.++++.+...|
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 9999999999999998 999899999999999999999887654332 22236778888765 6789999999888777
Q ss_pred HHhCCCCccHHHHHHHHHH
Q 007214 396 VRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 396 ~r~~~~~It~~dl~~Al~~ 414 (612)
...+...|+.+++..++..
T Consensus 219 ~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAA 237 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 6666778999998887765
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=1.3e-19 Score=186.59 Aligned_cols=241 Identities=20% Similarity=0.252 Sum_probs=158.5
Q ss_pred cceecCcccHHHHHHHHHH-hCCchhhhh-cCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-h-h-
Q 007214 171 KEVVLGGDVWDLLDELMIY-MGNPMQYYE-RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E-K- 245 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~-l~~p~~~~~-~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~-~- 245 (612)
++|+|++++++.+...+.. +..+..... .+...+.++||+||||||||++|+++|+.++.+++.++|+++... + +
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4589999888888766543 111111000 012357899999999999999999999999999999999998763 1 2
Q ss_pred hhHHHHHHHHHHH-----hhcCCeEEEEccchhhhccCCCC--ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 246 SGAARINEMFSIA-----RRNAPAFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 246 ~~~~~ir~lF~~A-----~~~~P~ILfIDEiD~l~~~~~~~--~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
.....++.++..+ ....++||||||+|.+....... +.......+.|+..+++........ .....++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc-cccCCcEEEEE
Confidence 1233466666533 11236899999999997554222 1222345778888888642111000 11234578888
Q ss_pred e----cCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHh-----------cCCCC---CccCCHHHHHHhcC---
Q 007214 319 A----TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS-----------AGKQL---AEDVNFEELVFRTV--- 377 (612)
Q Consensus 319 a----TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l-----------~~~~l---~~dvdl~~La~~t~--- 377 (612)
+ ++.+..+++++++ ||+..+++++|+.+++.+|++..+ ..... -++..++.|+..+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 8 4677889999998 999999999999999999998311 11111 11223566666652
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHh-----CCC-CccHHHHHHHHHH
Q 007214 378 ----GFSGADIRNLVNESGIMSVRK-----GHS-KIQQQDIVDVLDK 414 (612)
Q Consensus 378 ----G~sgadL~~lv~~A~~~A~r~-----~~~-~It~~dl~~Al~~ 414 (612)
+.+.+++.++++.+...+..+ +.. .|+.+++.+++.+
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 567889999998876543322 211 4888888887654
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=1.6e-19 Score=202.16 Aligned_cols=233 Identities=19% Similarity=0.218 Sum_probs=149.5
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch--
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-- 243 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-- 243 (612)
.+...+|++|.+++++.+.+.+....-. ... .+..++|+||||||||++|+++|+.++.+++.++++.+...
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 3456788999999998887665432111 011 45689999999999999999999999999999998875432
Q ss_pred --------hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc----cccc
Q 007214 244 --------EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR----FSLR 311 (612)
Q Consensus 244 --------~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~----~~~~ 311 (612)
.+.....+...|..+....| ||||||+|.+.... .....+.|+..|+......-.+. ....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF------RGDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh------ccCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 12223346677777766665 99999999996432 12245678888876443211110 0111
Q ss_pred ccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc-----CCCCC------ccCCHHHHHHhcC-CC
Q 007214 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA-----GKQLA------EDVNFEELVFRTV-GF 379 (612)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~-----~~~l~------~dvdl~~La~~t~-G~ 379 (612)
.++++|+|||+++.+|++|++ ||+ .|.++.|+.+++.+|++.|+. ...+. .+..+..++.... ..
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 568999999999999999999 995 799999999999999998762 11221 1112455554333 23
Q ss_pred cHHHHHHHHH----HHHHHHHHh--CCCCccHHHHHHHHHH
Q 007214 380 SGADIRNLVN----ESGIMSVRK--GHSKIQQQDIVDVLDK 414 (612)
Q Consensus 380 sgadL~~lv~----~A~~~A~r~--~~~~It~~dl~~Al~~ 414 (612)
..++|++.+. .|+..+.+. +...|+.+++.+++.+
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 4455555544 444444433 3346888888887653
No 39
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=6.7e-20 Score=199.21 Aligned_cols=169 Identities=18% Similarity=0.180 Sum_probs=77.4
Q ss_pred cceecCcccHHHHHHHHHH-hCCchhhhhcCC-ccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch--hh-
Q 007214 171 KEVVLGGDVWDLLDELMIY-MGNPMQYYERGV-QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EK- 245 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~-~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~--~~- 245 (612)
++|+|++++|+.|...+.. .+.+..+..++. .+++++||+||||||||++|+++|++++.+|+.++++.+.+. .+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4789999999988777643 333332322322 257899999999999999999999999999999999998874 34
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe-cCCCC
Q 007214 246 SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA-TNRPD 324 (612)
Q Consensus 246 ~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa-TN~p~ 324 (612)
.....++.+|..|... +++||+|.+... ..+.....++++|+.+||++.... .+ +++ ||+|+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~--~~~~~e~rvl~~LL~~~dg~~~~~---------~v--~a~~TN~~~ 157 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR--AEDVAEERILDALLPPAKNQWGEV---------EN--HDSHSSTRQ 157 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc--chhhHHHHHHHHHHHHhhcccccc---------cc--ccccccCHH
Confidence 3577899999998775 358999877533 223345678999999999976532 12 455 99999
Q ss_pred CccccccCCCceeEEEEeCCCCHH-HHHHHHHH
Q 007214 325 ELDLEFVRPGRIDRRLYIGLPDAK-QRVQIFDV 356 (612)
Q Consensus 325 ~LD~aLlrpgRFd~~I~v~~Pd~~-eR~~Il~~ 356 (612)
.||+||+||||||+.|++++|+.. .|.+|+..
T Consensus 158 ~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 158 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 999999999999999999999987 78888753
No 40
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.77 E-value=9.5e-19 Score=183.13 Aligned_cols=225 Identities=19% Similarity=0.148 Sum_probs=152.6
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch-hh
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EK 245 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~-~~ 245 (612)
+..+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++...... ..
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 34578899998877665543321 2479999999999999999999999999999987532211 00
Q ss_pred hhHHHH---HHHHHHHhhcC---CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 007214 246 SGAARI---NEMFSIARRNA---PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (612)
Q Consensus 246 ~~~~~i---r~lF~~A~~~~---P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (612)
.+.... ...| ..... .+||||||+|.+.. ...+.|+..|+..........+..+.+++||+|
T Consensus 89 ~g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 89 IGTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSPA----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp HEEEEEETTTTEE--EEEECTTCSSEEEEETGGGSCH----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred CCceeecCCCCce--EeccCcccccEEEEEccccCCH----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 000000 0000 00112 27999999998732 245666666664322111112233456888899
Q ss_pred cCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-----------------------ccCCHHH
Q 007214 320 TNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-----------------------EDVNFEE 371 (612)
Q Consensus 320 TN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-----------------------~dvdl~~ 371 (612)
+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++...... ++..++.
T Consensus 157 ~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~ 234 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKY 234 (331)
T ss_dssp ECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHH
T ss_pred cCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHH
Confidence 88543 38999999 999999999999999999999887643211 0101233
Q ss_pred HHHh-------------------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhc
Q 007214 372 LVFR-------------------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419 (612)
Q Consensus 372 La~~-------------------t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~~~~ 419 (612)
++.. ..|.|++.+.++++.|...|..+++..|+.+|+.+++..++.++
T Consensus 235 i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 235 IIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 3221 12669999999999999999999999999999999998887543
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.77 E-value=6.8e-18 Score=178.42 Aligned_cols=223 Identities=14% Similarity=0.123 Sum_probs=157.2
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEec
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASG 237 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~ 237 (612)
+..+++++|.++..+.+.. ++... .....+.+++|+||||||||++++++++++ +.++++++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~---~l~~~-----~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAE---VLAPA-----LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHH---TTGGG-----TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHH---HHHHH-----HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3445889998865555544 33221 112356789999999999999999999988 889999998
Q ss_pred ccccchhh-----------------h-hHHHHHHHHHHHhh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 007214 238 AEFTDSEK-----------------S-GAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (612)
Q Consensus 238 s~~~~~~~-----------------~-~~~~ir~lF~~A~~-~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~ 298 (612)
........ . ....+..++..... ..|++|||||+|.+...+ .....+..++..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQE 161 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGGC
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchhh
Confidence 87543210 0 11224445544433 348999999999996321 133456666666554
Q ss_pred CcccCCcccccccccEEEEEecCCC---CCccccccCCCceeE-EEEeCCCCHHHHHHHHHHHhcC----CCCCccCCHH
Q 007214 299 DKERTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDR-RLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFE 370 (612)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd~-~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~ 370 (612)
... ..++.+|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++.++.. ..+. +..+.
T Consensus 162 ~~~---------~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~ 229 (387)
T 2v1u_A 162 LGD---------RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVP 229 (387)
T ss_dssp C--------------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHH
T ss_pred cCC---------CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHH
Confidence 320 1347899999987 678899988 8864 8999999999999999987653 2232 22356
Q ss_pred HHHHhcC---CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 371 ELVFRTV---GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 371 ~La~~t~---G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
.++..+. | .++.+.++++.|...|..++...|+.+++..|+.+.
T Consensus 230 ~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 230 LCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 6777665 5 678888999999988888888899999999998775
No 42
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.76 E-value=5.1e-18 Score=177.95 Aligned_cols=226 Identities=17% Similarity=0.234 Sum_probs=144.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-------CCeeEEec
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-------LPFVFASG 237 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-------~~~i~vs~ 237 (612)
.++.+|++++|++++++.+... ...+ .+.++||+||||||||++|+++|+.++ .++ +|
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~---~~~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~ 82 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLT---AVDP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SS 82 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH---HHCG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CC
T ss_pred CCCCCchhccChHHHHHHHHHH---hhCC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccc---cc
Confidence 4567899999998876653221 1111 234699999999999999999999886 232 11
Q ss_pred cccc----------------------------chhhhhHHHHHHHHHHHh---------hcCCeEEEEccchhhhccCCC
Q 007214 238 AEFT----------------------------DSEKSGAARINEMFSIAR---------RNAPAFVFVDEIDAIAGRHAR 280 (612)
Q Consensus 238 s~~~----------------------------~~~~~~~~~ir~lF~~A~---------~~~P~ILfIDEiD~l~~~~~~ 280 (612)
.... .....+...+...+..+. ...+++|||||+|.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 1110 000000000122222221 11368999999998842
Q ss_pred CChhHHHHHHHHHHHhcCCc---ccCCcccccccccEEEEEecCCCC-CccccccCCCceeEEEEeCCC-CHHHHHHHHH
Q 007214 281 KDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFD 355 (612)
Q Consensus 281 ~~~~~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~P-d~~eR~~Il~ 355 (612)
..++.|+..++... ...+ .....+.++++|+|||..+ .++++|++ ||+.++.++.| +.+++.+|++
T Consensus 159 ------~~~~~Ll~~le~~~~~~~~~g-~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 159 ------HIVDLLLDVAQSGENVVERDG-LSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp ------HHHHHHHHHHHHSEEEECCTT-CCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCceEEEecc-eEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 24556666555321 1111 1122234689999999754 89999999 99999999999 6778878886
Q ss_pred HHh-------------------------------cCCCCCccCCHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHhCCC
Q 007214 356 VHS-------------------------------AGKQLAEDVNFEELVFRTVG---FSGADIRNLVNESGIMSVRKGHS 401 (612)
Q Consensus 356 ~~l-------------------------------~~~~l~~dvdl~~La~~t~G---~sgadL~~lv~~A~~~A~r~~~~ 401 (612)
.++ ....++++ .+..|+....+ -+.+.+.++++.|...|..+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~ 308 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALEGAT 308 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 531 11122221 23444444332 26799999999999999888988
Q ss_pred CccHHHHHHHHHHHHHhc
Q 007214 402 KIQQQDIVDVLDKQLLEG 419 (612)
Q Consensus 402 ~It~~dl~~Al~~~~~~~ 419 (612)
.|+.+|+.+|+..++.++
T Consensus 309 ~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 309 AVGRDHLKRVATMALSHR 326 (350)
T ss_dssp BCCHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHHhhc
Confidence 999999999998877554
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=1e-17 Score=162.11 Aligned_cols=203 Identities=17% Similarity=0.185 Sum_probs=141.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEecc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s 238 (612)
+..+.+|++++|.++.++.+...+. .. .+.+++|+||||||||++|+++++++ ..+++.++++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~---~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE---RK---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHH---TT---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 3456789999999877666655543 22 22349999999999999999999875 4567888876
Q ss_pred cccchhhhhHHHHHHHHHHHh------hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 239 EFTDSEKSGAARINEMFSIAR------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 239 ~~~~~~~~~~~~ir~lF~~A~------~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
...... .+...+.... ...+++|+|||+|.+.. ...+.|+..++... .
T Consensus 78 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~~~-----------~ 131 (226)
T 2chg_A 78 DERGID-----VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMYS-----------K 131 (226)
T ss_dssp CTTCHH-----HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTT-----------T
T ss_pred cccChH-----HHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------HHHHHHHHHHHhcC-----------C
Confidence 644321 1222222211 24689999999998842 13445555554422 2
Q ss_pred cEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHH
Q 007214 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (612)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A 391 (612)
++.+|++||.+..+++++.+ ||. .+.+++|+.++..++++.++...... .+..+..++..+.| +++.+.++++.+
T Consensus 132 ~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~ 207 (226)
T 2chg_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (226)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 36888899999999999998 887 89999999999999999877533221 22246677777655 667777777766
Q ss_pred HHHHHHhCCCCccHHHHHHHHH
Q 007214 392 GIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~ 413 (612)
+..+ ..|+.+|+.+++.
T Consensus 208 ~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 208 AAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHTC-----SCBCHHHHHHHHH
T ss_pred HhcC-----ceecHHHHHHHhc
Confidence 5443 5799999988764
No 44
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.75 E-value=5.6e-18 Score=180.00 Aligned_cols=225 Identities=18% Similarity=0.250 Sum_probs=145.2
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhh---hcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccch--hhh
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYY---ERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EKS 246 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~---~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~--~~~ 246 (612)
.|+|++++++.+...+.......... .....++.++||+||||||||++|+++|+.++.||+.++|+++... .+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 36899999888877664211110000 0112367899999999999999999999999999999999998765 233
Q ss_pred h-HHHHHHHHHHH----hhcCCeEEEEccchhhhccCCCCC----hhHHHHHHHHHHHhcCCcccC---Ccc-------c
Q 007214 247 G-AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARKD----PRRRATFEALIAQLDGDKERT---GID-------R 307 (612)
Q Consensus 247 ~-~~~ir~lF~~A----~~~~P~ILfIDEiD~l~~~~~~~~----~~~~~~l~~LL~~ld~~~~~~---~~~-------~ 307 (612)
. ...++.+|..+ ....|+||||||+|.+...+...+ ......++.|+..|++....- +.. .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 2 34577777765 344578999999999976543321 222347899999998542110 000 0
Q ss_pred ccccccEEEEEecCCC----------CC-----------------------------------ccccccCCCceeEEEEe
Q 007214 308 FSLRQAVIFICATNRP----------DE-----------------------------------LDLEFVRPGRIDRRLYI 342 (612)
Q Consensus 308 ~~~~~~ViVIaaTN~p----------~~-----------------------------------LD~aLlrpgRFd~~I~v 342 (612)
+-...++++|+++|.. .. ++|+|+. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 1123445666666642 11 6778887 99999999
Q ss_pred CCCCHHHHHHHHHH----Hh-------cCCCCCccC---CHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHh
Q 007214 343 GLPDAKQRVQIFDV----HS-------AGKQLAEDV---NFEELVF--RTVGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 343 ~~Pd~~eR~~Il~~----~l-------~~~~l~~dv---dl~~La~--~t~G~sgadL~~lv~~A~~~A~r~ 398 (612)
++|+.+++.+|+.. ++ ........+ -++.|+. ....+..++|+++++.+...+..+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999999885 11 111111111 2445553 334455678888888777666554
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.75 E-value=8.9e-18 Score=165.62 Aligned_cols=209 Identities=13% Similarity=0.135 Sum_probs=141.2
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccc
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~ 242 (612)
++.+|+++++.+..++.+..+..+...+ .+.+++|+||||||||++|+++++++ +.+++++++.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 4578999998554455565555554432 45789999999999999999999876 47889999888765
Q ss_pred hhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccE-EEEEecC
Q 007214 243 SEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV-IFICATN 321 (612)
Q Consensus 243 ~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~V-iVIaaTN 321 (612)
..... +.. ...|++|+|||+|.+... .. ..+.++..++..... ..+ +|+++++
T Consensus 94 ~~~~~-------~~~--~~~~~vliiDe~~~~~~~-----~~---~~~~l~~~l~~~~~~---------~~~~ii~~~~~ 147 (242)
T 3bos_A 94 ISTAL-------LEG--LEQFDLICIDDVDAVAGH-----PL---WEEAIFDLYNRVAEQ---------KRGSLIVSASA 147 (242)
T ss_dssp SCGGG-------GTT--GGGSSEEEEETGGGGTTC-----HH---HHHHHHHHHHHHHHH---------CSCEEEEEESS
T ss_pred HHHHH-------HHh--ccCCCEEEEeccccccCC-----HH---HHHHHHHHHHHHHHc---------CCCeEEEEcCC
Confidence 43211 111 134789999999988431 11 122333333321111 113 4444444
Q ss_pred CCC---CccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007214 322 RPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 322 ~p~---~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~A 395 (612)
.+. .+++++.+ ||. ..+.+++|+.+++.++++.++...... .+..+..++..+.| +.+++.++++.+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 443 45678887 886 899999999999999999887643322 22236778887765 8899999999998888
Q ss_pred HHhCCCCccHHHHHHHHH
Q 007214 396 VRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 396 ~r~~~~~It~~dl~~Al~ 413 (612)
..++ ..|+.+++.+++.
T Consensus 225 ~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHT-CCCCHHHHHHHHT
T ss_pred HHhC-CCCcHHHHHHHhh
Confidence 6555 4699999988763
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=3e-18 Score=178.63 Aligned_cols=205 Identities=15% Similarity=0.168 Sum_probs=136.1
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
++..+.+|++++|++++++.+...+. . ...|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~---~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITS---K--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHH---T--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHH---c--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 35678899999999988777766655 1 24567789999999999999999999999999999987744
Q ss_pred hhhhhHHHHHHHHHHHhhc-----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 243 SEKSGAARINEMFSIARRN-----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 243 ~~~~~~~~ir~lF~~A~~~-----~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
...++..+..+... .++||||||+|.+.+ ....+.|+..++... .++.+|
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---------~~~~~~L~~~le~~~-----------~~~~iI 140 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---------AESQRHLRSFMEAYS-----------SNCSII 140 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------HHHHHHHHHHHHHHG-----------GGCEEE
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------HHHHHHHHHHHHhCC-----------CCcEEE
Confidence 22344444333222 578999999999851 123455665555422 236888
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHh-------c--CCCCCccCCHHHHHHhcCCCcHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS-------A--GKQLAEDVNFEELVFRTVGFSGADIRNLV 388 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l-------~--~~~l~~dvdl~~La~~t~G~sgadL~~lv 388 (612)
++||.+..+++++++ ||. .+.+++|+.++|.+|++.+. . +..+.+...+..++..+.| +.+++.+.+
T Consensus 141 ~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L 216 (324)
T 3u61_B 141 ITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGEL 216 (324)
T ss_dssp EEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHH
T ss_pred EEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHH
Confidence 999999999999999 994 79999999999877665432 1 2223221336677777655 334444444
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 389 NESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 389 ~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
+.++ ....|+.+++.+++..
T Consensus 217 ~~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 217 DSYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHG------GGTCBCC---------
T ss_pred HHHh------ccCCCCHHHHHHHhCC
Confidence 4333 2345888887766543
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.75 E-value=8.1e-18 Score=183.80 Aligned_cols=220 Identities=14% Similarity=0.213 Sum_probs=149.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEeccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~ 239 (612)
.+..+|++++..+.....+..+..+..+| .. +.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 45678999984333333444444555444 12 6789999999999999999999988 88999999988
Q ss_pred ccchhhh-hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 007214 240 FTDSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (612)
Q Consensus 240 ~~~~~~~-~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (612)
+...... ........|.......|+||||||+|.+.++ .. ....++..++..... ...+||+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~-----~~---~q~~l~~~l~~l~~~---------~~~iIit 233 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK-----TG---VQTELFHTFNELHDS---------GKQIVIC 233 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC-----HH---HHHHHHHHHHHHHTT---------TCEEEEE
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC-----hH---HHHHHHHHHHHHHHC---------CCeEEEE
Confidence 7543211 1111112333333336899999999998532 11 223333333221111 1245555
Q ss_pred ecCCCCC---ccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcC--CCCCccCCHHHHHHhcCCCcHHHHHHHHHHH
Q 007214 319 ATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGADIRNLVNES 391 (612)
Q Consensus 319 aTN~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgadL~~lv~~A 391 (612)
+.+.+.. ++++|++ ||. ..+.+++|+.++|.+|++..+.. ..+.++ .+..|+..+.| +.+++.++++.+
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~ 309 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Confidence 5555554 7899998 996 78999999999999999987753 334333 37788888765 899999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHH
Q 007214 392 GIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
...|...+. .|+.+++.+++..
T Consensus 310 ~~~a~~~~~-~It~~~~~~~l~~ 331 (440)
T 2z4s_A 310 LVYKETTGK-EVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHSSS-CCCHHHHHHHTST
T ss_pred HHHHHHhCC-CCCHHHHHHHHHH
Confidence 988876664 6999998888764
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=5e-18 Score=185.72 Aligned_cols=206 Identities=18% Similarity=0.232 Sum_probs=147.2
Q ss_pred cCCcccccceecCcccH---HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVW---DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k---~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
...+.+|++++|++++. ..|...+.. . ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~---~---------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA---G---------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH---T---------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc---C---------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 44568899999999877 444444432 2 12589999999999999999999999999999986543
Q ss_pred cchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 241 TDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 241 ~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
. ...++.++..+.. ..++||||||+|.+... ..+.|+..++.. .+++
T Consensus 87 ~------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~----------~q~~LL~~le~~-------------~v~l 137 (447)
T 3pvs_A 87 G------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS----------QQDAFLPHIEDG-------------TITF 137 (447)
T ss_dssp C------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHTT-------------SCEE
T ss_pred C------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH----------HHHHHHHHHhcC-------------ceEE
Confidence 2 2345566665543 46799999999988432 345567766641 1566
Q ss_pred EEec--CCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCC-------C-CccCCHHHHHHhcCCCcHHHHHH
Q 007214 317 ICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ-------L-AEDVNFEELVFRTVGFSGADIRN 386 (612)
Q Consensus 317 IaaT--N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~-------l-~~dvdl~~La~~t~G~sgadL~~ 386 (612)
|++| |....++++|++ |+. .+.+++|+.+++.++++.++.... . -.+..++.|+..+.| +.+++.+
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln 213 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALN 213 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHH
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHH
Confidence 6666 444689999999 985 788999999999999998876521 1 112236777777655 7788889
Q ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHH
Q 007214 387 LVNESGIMSVRK--GHSKIQQQDIVDVLDK 414 (612)
Q Consensus 387 lv~~A~~~A~r~--~~~~It~~dl~~Al~~ 414 (612)
+++.+...+... +...|+.+++.+++.+
T Consensus 214 ~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 214 TLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 999888776423 4457999999888764
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.74 E-value=1.1e-17 Score=174.66 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=131.7
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccccc
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~ 241 (612)
.++.+|++++...........+..+...+ ...+.+++|+||||||||++|+++++++ +.+++++++.++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 35678999984333333344444444444 1346789999999999999999999988 8999999998875
Q ss_pred chhhh-hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 242 DSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 242 ~~~~~-~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
..... ........|.... ..+++|||||+|.+.++ ....+.+..++..+.. . ...+|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~-----~~~~~~l~~~l~~~~~---~---------~~~iii~~~ 139 (324)
T 1l8q_A 78 QAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK-----ERTQIEFFHIFNTLYL---L---------EKQIILASD 139 (324)
T ss_dssp HHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC-----HHHHHHHHHHHHHHHH---T---------TCEEEEEES
T ss_pred HHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC-----hHHHHHHHHHHHHHHH---C---------CCeEEEEec
Confidence 44211 1111112233222 23789999999998532 1122222233332211 1 125667777
Q ss_pred CCCC---CccccccCCCcee--EEEEeCCCCHHHHHHHHHHHhcCCC--CCccCCHHHHHHhcCCCcHHHHHHHHHHHHH
Q 007214 321 NRPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGI 393 (612)
Q Consensus 321 N~p~---~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~~t~G~sgadL~~lv~~A~~ 393 (612)
+.+. .++++|++ ||+ ..+.+++ +.+++.+|++.++.... +.++ .+..++..+ -+.+++.++++.+..
T Consensus 140 ~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~-~l~~l~~~~--g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE-VIDYLLENT--KNVREIEGKIKLIKL 213 (324)
T ss_dssp SCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHC--SSHHHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 7666 68899998 996 7899999 99999999998876433 3332 367888888 478889999888765
Q ss_pred H
Q 007214 394 M 394 (612)
Q Consensus 394 ~ 394 (612)
.
T Consensus 214 ~ 214 (324)
T 1l8q_A 214 K 214 (324)
T ss_dssp H
T ss_pred c
Confidence 5
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.73 E-value=6.4e-17 Score=158.18 Aligned_cols=209 Identities=21% Similarity=0.286 Sum_probs=145.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeE--Eecc---
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF--ASGA--- 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~--vs~s--- 238 (612)
+..+.+|++++|.++..+.|...+.. . ..+..++|+||||||||+++++++++++..... ..+.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~---~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL---G--------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH---T--------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45567899999998777766665542 1 235689999999999999999999887542211 0000
Q ss_pred -----------cccc---hhhhhHHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 007214 239 -----------EFTD---SEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (612)
Q Consensus 239 -----------~~~~---~~~~~~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~ 300 (612)
++.. ........++.++..+. ...|.+|+|||+|.+. ...++.|+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~----------~~~~~~l~~~l~~~~ 154 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLKTLEEPP 154 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC----------HHHHHHHHHHHHSCC
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc----------HHHHHHHHHHHhcCC
Confidence 1110 01122334566665543 2357999999999873 124566777776432
Q ss_pred ccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCC
Q 007214 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (612)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (612)
.++.+|++||.+..+++++.+ |+ ..+++++|+.++..++++.++...... .+..+..+++.+.|
T Consensus 155 -----------~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G- 219 (250)
T 1njg_A 155 -----------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 219 (250)
T ss_dssp -----------TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-
T ss_pred -----------CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-
Confidence 247889999999999999988 76 789999999999999999887543322 22336788888877
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 380 sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
+++.+.++++.|... +...|+.+++.+++
T Consensus 220 ~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 888999999877533 34579999987764
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.72 E-value=1.9e-17 Score=170.97 Aligned_cols=211 Identities=18% Similarity=0.223 Sum_probs=137.8
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhh
Q 007214 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG 247 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~ 247 (612)
++++|++.+++.+...+........+ ..++...+||+||||||||++|+++|+.+ +.+++.++|+.+.......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSC---TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCC---CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46789988877777666543211000 01234579999999999999999999987 5679999998876532110
Q ss_pred -----------HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 007214 248 -----------AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (612)
Q Consensus 248 -----------~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (612)
......+........++||||||+|.+.. ..++.|+..|+.............-.++++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP----------DVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH----------HHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH----------HHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 00001222333344458999999998842 356677777765332211111111235789
Q ss_pred EEecCC--------------------------CCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC-------CC
Q 007214 317 ICATNR--------------------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-------QL 363 (612)
Q Consensus 317 IaaTN~--------------------------p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-------~l 363 (612)
|+|||. ...++++|++ ||+..+.+++|+.+++.+|++.++... ..
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~ 241 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTC
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999998 4467888887 999999999999999999999876532 11
Q ss_pred C---ccCCHHHHHHhcC--CCcHHHHHHHHHHHHHHHH
Q 007214 364 A---EDVNFEELVFRTV--GFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 364 ~---~dvdl~~La~~t~--G~sgadL~~lv~~A~~~A~ 396 (612)
. .+..+..|+.... ..+.++|.++++.+...+.
T Consensus 242 ~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 242 SLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp EEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred EEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 1 1122556666554 5678888888887765543
No 52
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=3e-17 Score=174.11 Aligned_cols=214 Identities=16% Similarity=0.183 Sum_probs=149.4
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----------CCCeeEEe
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----------GLPFVFAS 236 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----------g~~~i~vs 236 (612)
..+++++|.++..+.+...+..... ...+++++|+||||||||++|+++++++ +.++++++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3448899998776666655543211 1356799999999999999999999987 89999999
Q ss_pred ccccc-chhhh-------------------hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHH-HHHHHHH
Q 007214 237 GAEFT-DSEKS-------------------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRAT-FEALIAQ 295 (612)
Q Consensus 237 ~s~~~-~~~~~-------------------~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~-l~~LL~~ 295 (612)
|.... ..... ....+..++..+.... +||||||+|.+..... ... +..|+..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~------~~~~l~~l~~~ 161 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG------GDIVLYQLLRS 161 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT------SHHHHHHHHTS
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC------CceeHHHHhcC
Confidence 87654 21100 0122444444444443 4999999999964310 112 3333332
Q ss_pred hcCCcccCCcccccccccEEEEEecCCC---CCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcC----CCCCccCC
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG----KQLAEDVN 368 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvd 368 (612)
. .++.+|++||.+ +.+++++++ ||...+.+++|+.++..+|++.++.. ..+. +..
T Consensus 162 ~---------------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~ 223 (384)
T 2qby_B 162 D---------------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEI 223 (384)
T ss_dssp S---------------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHH
T ss_pred C---------------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHH
Confidence 2 237899999987 678999988 98889999999999999999987652 2222 223
Q ss_pred HHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 369 FEELVFRTVG--FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 369 l~~La~~t~G--~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
+..+++.+.+ -+.+.+.++++.|...|. +...|+.+++.+++.+..
T Consensus 224 ~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 224 LSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 5667776652 256677788888887775 557899999999988753
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=2.6e-17 Score=183.19 Aligned_cols=222 Identities=18% Similarity=0.262 Sum_probs=141.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhC--CchhhhhcCC---ccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMG--NPMQYYERGV---QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~--~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s 238 (612)
+..+.+|+|++|.+++++.|.+.+.... .+..|...|. ..++++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 5677899999999977776665554211 1112222232 3678999999999999999999999999999999999
Q ss_pred cccchhh-hh-H------HHHHHHHHHH-----hhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCc
Q 007214 239 EFTDSEK-SG-A------ARINEMFSIA-----RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGI 305 (612)
Q Consensus 239 ~~~~~~~-~~-~------~~ir~lF~~A-----~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~ 305 (612)
++..... .. . ..+..+|..+ ....++||||||+|.+.... .. .++.|+..++...
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~----~~---~l~~L~~~l~~~~----- 179 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----RG---GVGQLAQFCRKTS----- 179 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS----TT---HHHHHHHHHHHCS-----
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh----HH---HHHHHHHHHHhcC-----
Confidence 8765421 10 0 0123334433 23568999999999996421 11 2444555444311
Q ss_pred ccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcC--CCCCccCCHHHHHHhcCCCcHHH
Q 007214 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGAD 383 (612)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgad 383 (612)
..+++++++.....+++ +. |+...+.|++|+.+++.+++...+.. ..+.++ .+..|+..+.| |
T Consensus 180 ------~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G----d 244 (516)
T 1sxj_A 180 ------TPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG----D 244 (516)
T ss_dssp ------SCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT----C
T ss_pred ------CCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----c
Confidence 22555554444444543 44 44578999999999999999876643 334433 37888888755 4
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 384 IRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 384 L~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
++.+++.....+. +...|+.+++.+++..
T Consensus 245 iR~~i~~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 245 IRQVINLLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHHHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCchHHHHHHHHh
Confidence 5555554443333 3356888888777653
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.71 E-value=4.1e-16 Score=164.03 Aligned_cols=224 Identities=18% Similarity=0.173 Sum_probs=156.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~ 244 (612)
-...+|++++|++.+++.+...+..-+.+ ..++..++|+||||||||+|++++|++++.++...++..+...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~- 90 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ- 90 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH-
Confidence 34568999999987777776655432211 1345779999999999999999999999999888877655432
Q ss_pred hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc------CCcccc-cccccEEEE
Q 007214 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER------TGIDRF-SLRQAVIFI 317 (612)
Q Consensus 245 ~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~------~~~~~~-~~~~~ViVI 317 (612)
..+..++.. ...++|+||||+|.+.. . ..+.|+..+...... ...... .....+.++
T Consensus 91 ----~~l~~~~~~--~~~~~v~~iDE~~~l~~-------~---~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 91 ----GDMAAILTS--LERGDVLFIDEIHRLNK-------A---VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ----HHHHHHHHH--CCTTCEEEEETGGGCCH-------H---HHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ----HHHHHHHHH--ccCCCEEEEcchhhcCH-------H---HHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 123333332 23467999999998842 1 223333333322100 000000 011246778
Q ss_pred EecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCc-cCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
++||++..|++++++ ||...+.+++|+.+++.+|++.........- +..+..++.++.| +++++.++++.+...|.
T Consensus 155 ~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 155 GATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 899999999999999 9998999999999999999998765433221 2236788888776 67899999999988888
Q ss_pred HhCCCCccHHHHHHHHHHH
Q 007214 397 RKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 397 r~~~~~It~~dl~~Al~~~ 415 (612)
.++...|+.+++.++++..
T Consensus 232 ~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 232 VVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHTCSSBCHHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHh
Confidence 8888889999999998874
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=2.3e-16 Score=166.37 Aligned_cols=222 Identities=15% Similarity=0.153 Sum_probs=153.5
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc------CCCeeEEecccc
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES------GLPFVFASGAEF 240 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~------g~~~i~vs~s~~ 240 (612)
+..+++++|.++..+.|. .++.... ....+..++|+||||||||++++++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~---~~l~~~~-----~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIA---SILAPLY-----REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHH---HSSGGGG-----GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHH---HHHHHHH-----cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 455688999885544444 4433210 01356789999999999999999999988 889999997754
Q ss_pred cchh-----------------h-hhHHHHHHHHHHHhhc-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc
Q 007214 241 TDSE-----------------K-SGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE 301 (612)
Q Consensus 241 ~~~~-----------------~-~~~~~ir~lF~~A~~~-~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~ 301 (612)
.... + ........++...... .|+||+|||+|.+..... ...+..++..++...
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~------~~~l~~l~~~~~~~~- 160 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------DDILYKLSRINSEVN- 160 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC------STHHHHHHHHHHSCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc------CHHHHHHhhchhhcC-
Confidence 3210 0 0122244455444443 389999999999964321 125667777665431
Q ss_pred cCCcccccccccEEEEEecCCC---CCccccccCCCcee-EEEEeCCCCHHHHHHHHHHHhcC----CCCCccCCHHHHH
Q 007214 302 RTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFEELV 373 (612)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd-~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~La 373 (612)
..++.+|++||.+ ..+++.+.+ ||. +.+.+++|+.++..++++.++.. ..+.. ..+..++
T Consensus 161 ---------~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~ 228 (386)
T 2qby_A 161 ---------KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPD-NVIKLCA 228 (386)
T ss_dssp ---------C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCH-HHHHHHH
T ss_pred ---------CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHH
Confidence 1247889999877 467788887 775 58999999999999999876642 22222 2245566
Q ss_pred HhcC---CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 374 FRTV---GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 374 ~~t~---G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
..+. | +++.+.++++.|...|..++...|+.+++..|+.+..
T Consensus 229 ~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 229 ALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 6655 4 6777888999999888888888999999999988753
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=2.5e-16 Score=165.09 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=145.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC------CCeeEEec
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG------LPFVFASG 237 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g------~~~i~vs~ 237 (612)
+..+.+|++++|++++++.+... +... . +.++||+||||||||++|+++|++++ ..++.+++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~---l~~~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKT---LKSA--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHH---TTCT--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hcCCCCHHHhhCCHHHHHHHHHH---HhcC--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 56778999999999887766554 3332 1 23499999999999999999998753 46788887
Q ss_pred ccccchhhhhHHHHHHHHHHH-------------hhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCC
Q 007214 238 AEFTDSEKSGAARINEMFSIA-------------RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTG 304 (612)
Q Consensus 238 s~~~~~~~~~~~~ir~lF~~A-------------~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ 304 (612)
++...... ....+.. |... ....+.||||||+|.+.. ...+.|+..++....
T Consensus 98 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------~~~~~Ll~~le~~~~--- 162 (353)
T 1sxj_D 98 SDERGISI-VREKVKN-FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------DAQSALRRTMETYSG--- 162 (353)
T ss_dssp SSCCCHHH-HTTHHHH-HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------HHHHHHHHHHHHTTT---
T ss_pred ccccchHH-HHHHHHH-HhhhcccccchhhcccCCCCCceEEEEECCCccCH----------HHHHHHHHHHHhcCC---
Confidence 76532210 0011111 1110 112457999999998842 234566666665322
Q ss_pred cccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHH
Q 007214 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGAD 383 (612)
Q Consensus 305 ~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgad 383 (612)
.+.+|++||.+..+++++++ |+. .+.+++|+.++..++++..+...... ++..+..++..+.| +.+.
T Consensus 163 --------~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~ 230 (353)
T 1sxj_D 163 --------VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRR 230 (353)
T ss_dssp --------TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHH
T ss_pred --------CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 25677788999999999998 985 89999999999999999877543321 22346788888776 5777
Q ss_pred HHHHHHHHHHHHHHhCCC-CccHHHHHHHHH
Q 007214 384 IRNLVNESGIMSVRKGHS-KIQQQDIVDVLD 413 (612)
Q Consensus 384 L~~lv~~A~~~A~r~~~~-~It~~dl~~Al~ 413 (612)
+.++++.++..+.+.+.. .|+.+++.+++.
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 231 GITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 778888777766554433 699999877654
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.70 E-value=1.9e-17 Score=156.47 Aligned_cols=158 Identities=16% Similarity=0.272 Sum_probs=111.6
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEE
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~v 235 (612)
.+.+|++++|.++. ++.+...+.. ..+.+++|+||||||||++|+++++++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~---~~~l~~~l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEE---IRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHH---HHHHHHHHTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHH---HHHHHHHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 35679999998854 4445555543 246789999999999999999999986 7889999
Q ss_pred ecccccch---hhhhHHHHHHHHHHHh-hcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccc
Q 007214 236 SGAEFTDS---EKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (612)
Q Consensus 236 s~s~~~~~---~~~~~~~ir~lF~~A~-~~~P~ILfIDEiD~l~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~ 310 (612)
++..+... .+.....++.++..+. ...|+||+|||+|.+...+.. ........+..+ ++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~---~~~------------ 149 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA---LAR------------ 149 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHH---HHT------------
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh---hcc------------
Confidence 98876532 2344556777777654 456899999999999643211 111112222222 222
Q ss_pred cccEEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHH
Q 007214 311 RQAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIF 354 (612)
Q Consensus 311 ~~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il 354 (612)
.++.+|++||.+. .+++++++ ||+ .+.+++|+.++|.+|+
T Consensus 150 -~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred -CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1367888888876 78999999 998 6999999999999876
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=2.6e-16 Score=182.82 Aligned_cols=221 Identities=17% Similarity=0.174 Sum_probs=154.6
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEE
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~v 235 (612)
.+.+|++++|.++. ++.++..+... .+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 181 ~~~~~d~~iGr~~~---i~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKE---LERAIQVLCRR---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHH---HHHHHHHHTSS---------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHH---HHHHHHHHhcc---------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34689999999854 44455555433 46789999999999999999999876 5567777
Q ss_pred ecccccch---hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 236 SGAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 236 s~s~~~~~---~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
+++.+... .+....+++.+|..+....++||||||+|.+.+.+.... ......+ .+...... .
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-~~~~~~~----~L~~~l~~---------~ 314 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-GQVDAAN----LIKPLLSS---------G 314 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-CHHHHHH----HHSSCSSS---------C
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-chHHHHH----HHHHHHhC---------C
Confidence 77776532 345677899999999888899999999999976543211 1122222 22222221 2
Q ss_pred cEEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcC------CCCCccCCHHHHHHhc-----
Q 007214 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG------KQLAEDVNFEELVFRT----- 376 (612)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~------~~l~~dvdl~~La~~t----- 376 (612)
.+.+|++||.++ .+|++|.| ||+ .+.++.|+.++|.+|++.+... ..+.+ ..+..++..+
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~-~al~~~~~~s~~~i~ 390 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTA-KAVRAAVELAVKYIN 390 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHCT
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhhhcc
Confidence 378899998653 57899999 997 7999999999999999876542 22222 2244555443
Q ss_pred CCCcHHHHHHHHHHHHHHHHH----hCCCCccHHHHHHHHHHHH
Q 007214 377 VGFSGADIRNLVNESGIMSVR----KGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 377 ~G~sgadL~~lv~~A~~~A~r----~~~~~It~~dl~~Al~~~~ 416 (612)
..+.+..+..++++|+..+.. .....|+.+|+.+++.+..
T Consensus 391 ~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 391 DRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred cccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 345677888999998876655 2456799999999988753
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=4.3e-16 Score=165.10 Aligned_cols=221 Identities=15% Similarity=0.109 Sum_probs=153.7
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCc--eEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecccc
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVR--GVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEF 240 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~--gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~~ 240 (612)
+..+++++|.++..+.+...+...... ..+. .++|+||||||||++++++++++ +.++++++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 344588999987666665554432111 2234 89999999999999999999988 678999998765
Q ss_pred cchhh------------------hhHHHHHHHHHHHh-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc
Q 007214 241 TDSEK------------------SGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE 301 (612)
Q Consensus 241 ~~~~~------------------~~~~~ir~lF~~A~-~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~ 301 (612)
..... ........+..... ...|.||+|||+|.+. ...++.|+..++....
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~----------~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA----------PDILSTFIRLGQEADK 154 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC----------HHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc----------hHHHHHHHHHHHhCCC
Confidence 43110 00111222222222 2458999999999882 2356667666654321
Q ss_pred cCCcccccccccEEEEEecCCC---CCccccccCCCceeE-EEEeCCCCHHHHHHHHHHHhcC----CCCCccCCHHHHH
Q 007214 302 RTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDR-RLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFEELV 373 (612)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd~-~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~La 373 (612)
. ...++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ..+ .+..+..++
T Consensus 155 ~-------~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~ 224 (389)
T 1fnn_A 155 L-------GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SEDILQMIA 224 (389)
T ss_dssp H-------SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CHHHHHHHH
T ss_pred C-------CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHH
Confidence 0 01247889999987 667888877 8864 8999999999999999877653 222 233467788
Q ss_pred HhcC--------CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 007214 374 FRTV--------GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (612)
Q Consensus 374 ~~t~--------G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~ 415 (612)
..+. +-.++.+.++++.|...|..++...|+.+++..++...
T Consensus 225 ~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 225 DITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 8873 23678899999999999988888899999999998765
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.68 E-value=1.9e-16 Score=174.19 Aligned_cols=207 Identities=18% Similarity=0.211 Sum_probs=136.6
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeE
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVF 234 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~ 234 (612)
..+.+|++|+|.++..+. ++..+... .+.++||+||||||||++|+++|..+ +.+++.
T Consensus 174 ~r~~~ld~iiGr~~~i~~---l~~~l~r~---------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQR---VIEVLSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TTSSCSCCCCCCHHHHHH---HHHHHHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhcCCCCCccCcHHHHHH---HHHHHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 446689999999865444 44444332 34689999999999999999999986 788999
Q ss_pred EecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccE
Q 007214 235 ASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (612)
Q Consensus 235 vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~V 314 (612)
++++ ....+....+++.+|..+....|+||||| +. ....+.|+..|+. ..+
T Consensus 242 l~~~--~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---------~~a~~~L~~~L~~-------------g~v 292 (468)
T 3pxg_A 242 LDMG--TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLAR-------------GEL 292 (468)
T ss_dssp C------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTTS-------------SSC
T ss_pred eeCC--ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---------hhHHHHHHHhhcC-------------CCE
Confidence 9887 22234445678899999998889999999 11 0122334333331 247
Q ss_pred EEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-----ccCCHHHHHHhcC-----CC
Q 007214 315 IFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-----EDVNFEELVFRTV-----GF 379 (612)
Q Consensus 315 iVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-----~dvdl~~La~~t~-----G~ 379 (612)
.+|++||.++ .+|++++| ||. .|.|+.|+.+++.+|++.++...... .+..+..++..+. .+
T Consensus 293 ~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~ 369 (468)
T 3pxg_A 293 QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (468)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCc
Confidence 9999999987 68999999 997 59999999999999999877552211 1122445554433 34
Q ss_pred cHHHHHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHH
Q 007214 380 SGADIRNLVNESGIMSVRKGH-SKIQQQDIVDVLDKQ 415 (612)
Q Consensus 380 sgadL~~lv~~A~~~A~r~~~-~~It~~dl~~Al~~~ 415 (612)
.+.....++.+|+..+..+.. ..-...+++..+++.
T Consensus 370 lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 370 LPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 466778888888876655443 334445555555543
No 61
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=2.2e-16 Score=168.38 Aligned_cols=237 Identities=19% Similarity=0.234 Sum_probs=141.9
Q ss_pred ceecCcccHHHHHHHHH-HhCCchhh-----------------hhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 172 EVVLGGDVWDLLDELMI-YMGNPMQY-----------------YERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~-~l~~p~~~-----------------~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
+|+|++++|+.|...+. .++..... .......+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 58999999998887662 11111100 0112345678999999999999999999999999999
Q ss_pred EEecccccchh--hhh-HHHHHHHHHHHh----hcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcc-
Q 007214 234 FASGAEFTDSE--KSG-AARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKE- 301 (612)
Q Consensus 234 ~vs~s~~~~~~--~~~-~~~ir~lF~~A~----~~~P~ILfIDEiD~l~~~~~~~----~~~~~~~l~~LL~~ld~~~~- 301 (612)
.++|..+.... +.. ...+..++..+. ...++||||||+|.+...+... +......++.|+..|++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99999886432 221 233555555432 2357899999999997543211 11122367888888886421
Q ss_pred --cCCcc-------cccccccEEEEEecCCC-----------------------------------------CCcccccc
Q 007214 302 --RTGID-------RFSLRQAVIFICATNRP-----------------------------------------DELDLEFV 331 (612)
Q Consensus 302 --~~~~~-------~~~~~~~ViVIaaTN~p-----------------------------------------~~LD~aLl 331 (612)
..+.. ......++++|+|||.. ..+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 00000 00112456788887721 12455666
Q ss_pred CCCceeEEEEeCCCCHHHHHHHHHH----H-------hc--CCCCC-ccCCHHHHHHhcC--CCcHHHHHHHHHHHHHHH
Q 007214 332 RPGRIDRRLYIGLPDAKQRVQIFDV----H-------SA--GKQLA-EDVNFEELVFRTV--GFSGADIRNLVNESGIMS 395 (612)
Q Consensus 332 rpgRFd~~I~v~~Pd~~eR~~Il~~----~-------l~--~~~l~-~dvdl~~La~~t~--G~sgadL~~lv~~A~~~A 395 (612)
+ ||+..+.+++++.++..+|+.. + +. +..+. .+..+..|+.... ....++|.++++.+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 8988999999999999999862 1 11 11111 1112455665533 356788999998888766
Q ss_pred HHhCC------CCccHHHHHH
Q 007214 396 VRKGH------SKIQQQDIVD 410 (612)
Q Consensus 396 ~r~~~------~~It~~dl~~ 410 (612)
..+.. ..|+.+++.+
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLK 360 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTT
T ss_pred HhhccCCCCCEEEEeHHHhcC
Confidence 55322 1366666544
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=2.6e-16 Score=182.82 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=134.3
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh
Q 007214 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (612)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~ 246 (612)
.++|+|++++++.+...+...+..... ..++..++||+||||||||++|+++|+.+ +.+|+.++|+++.+....
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~---~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKD---PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSC---TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 457889998888777777654322110 01122369999999999999999999987 789999999999876422
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCC-
Q 007214 247 GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE- 325 (612)
Q Consensus 247 ~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~- 325 (612)
. ...++...+...++||||||||.+. ...++.|+..|+.........+.....++++|+|||.+..
T Consensus 567 ~---~~~l~~~~~~~~~~vl~lDEi~~~~----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~ 633 (758)
T 3pxi_A 567 S---GGQLTEKVRRKPYSVVLLDAIEKAH----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE 633 (758)
T ss_dssp C------CHHHHHHCSSSEEEEECGGGSC----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC
T ss_pred c---cchhhHHHHhCCCeEEEEeCccccC----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh
Confidence 2 2223334445567899999999873 2466777777776332222122223456899999997554
Q ss_pred -----------ccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC-------CCCccC---CHHHHHHh--cCCCcHH
Q 007214 326 -----------LDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-------QLAEDV---NFEELVFR--TVGFSGA 382 (612)
Q Consensus 326 -----------LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-------~l~~dv---dl~~La~~--t~G~sga 382 (612)
++|+|++ ||+..|.+++|+.+++.+|++.++... .....+ -+..|+.. ...+..+
T Consensus 634 ~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R 711 (758)
T 3pxi_A 634 KDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGAR 711 (758)
T ss_dssp CHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTT
T ss_pred HHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCCh
Confidence 7788887 999999999999999999998776431 111111 23445442 3345566
Q ss_pred HHHHHHHHHH
Q 007214 383 DIRNLVNESG 392 (612)
Q Consensus 383 dL~~lv~~A~ 392 (612)
+|+++++.+.
T Consensus 712 ~L~~~i~~~v 721 (758)
T 3pxi_A 712 PLRRAIQKHV 721 (758)
T ss_dssp THHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=3.7e-16 Score=161.07 Aligned_cols=207 Identities=18% Similarity=0.187 Sum_probs=139.0
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEec
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASG 237 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~ 237 (612)
++..+.+|++++|++++++.+... ++.. ..| ++||+||||||||++|+++|+++ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~---l~~~--------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGY---VERK--------NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTT---TTTT--------CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHH---HhCC--------CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 356778999999998776665543 3321 223 39999999999999999999986 446888888
Q ss_pred ccccchhhhhHHHHHHHHHHHh--hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 238 AEFTDSEKSGAARINEMFSIAR--RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 238 s~~~~~~~~~~~~ir~lF~~A~--~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
++..... .....+........ ...+.||+|||+|.+.. ...+.|+..++.. +.+++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~-----------~~~~~ 134 (319)
T 2chq_A 77 SDERGID-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMY-----------SKSCR 134 (319)
T ss_dssp TSTTCTT-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH----------HHHHTTGGGTSSS-----------SSSEE
T ss_pred ccccChH-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH----------HHHHHHHHHHHhc-----------CCCCe
Confidence 7653321 11111222211110 14479999999998842 2345566555542 23478
Q ss_pred EEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007214 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A~~~ 394 (612)
+|++||.+..+++++.+ |+. .+.+++|+.+++.+++..++...... ++..+..++..+.| +.+.+.++++.++.
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~- 209 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA- 209 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH-
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH-
Confidence 88999999999999998 885 89999999999999999887654432 22235677766654 55556566654432
Q ss_pred HHHhCCCCccHHHHHHHH
Q 007214 395 SVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 395 A~r~~~~~It~~dl~~Al 412 (612)
. ...|+.+++.+++
T Consensus 210 --~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 210 --I--GEVVDADTIYQIT 223 (319)
T ss_dssp --S--SSCBCHHHHHHHT
T ss_pred --c--CCCCCHHHHHHHH
Confidence 1 3468888876654
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=4.2e-16 Score=180.99 Aligned_cols=170 Identities=20% Similarity=0.255 Sum_probs=121.4
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCC----ccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchh--
Q 007214 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGV----QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-- 244 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~----~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~-- 244 (612)
++|+|++++++.+...+...+ .|. ++..++||+||||||||++|+++|+.++.+++.++|+++.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 457888887777766655432 222 2334799999999999999999999999999999999986530
Q ss_pred ---------hhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 245 ---------KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 245 ---------~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
..+......+....+...++||||||+|.+. ...++.|+..|+......+..+.....+++
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH----------PDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC----------HHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC----------HHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 1122222233444455567999999999873 236778888877532211111111124689
Q ss_pred EEEecCCCC-------------------------CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 316 FICATNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 316 VIaaTN~p~-------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
||+|||.+. .++|+|++ ||+..|.|++|+.+++.+|++.++.
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 999999854 57888888 9999999999999999999998775
No 65
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.64 E-value=2.4e-16 Score=174.36 Aligned_cols=211 Identities=19% Similarity=0.198 Sum_probs=132.5
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC--CCeeEEecccccch--hh-
Q 007214 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDS--EK- 245 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g--~~~i~vs~s~~~~~--~~- 245 (612)
..++|++++++.+..... ...++||+||||||||++|+++|..++ .+|..+.+...... .+
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 346788876655433321 234799999999999999999999884 35666555421111 11
Q ss_pred -hhHH-HHHHHHHHHhhc---CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 007214 246 -SGAA-RINEMFSIARRN---APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (612)
Q Consensus 246 -~~~~-~ir~lF~~A~~~---~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (612)
.+.. .-...|..+... .++|||||||+.+. ..+.+.|+..|+.............+.. ++|+||
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~----------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~AT 156 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG----------PAILNTLLTAINERQFRNGAHVEKIPMR-LLVAAS 156 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC----------HHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc----------HHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhcc
Confidence 0110 112233322222 46899999998663 2467788888875432221111223333 457777
Q ss_pred CCCCC---ccccccCCCceeEEEEeCCCCH-HHHHHHHHHHhcCC-------------------------CCCccCCHHH
Q 007214 321 NRPDE---LDLEFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSAGK-------------------------QLAEDVNFEE 371 (612)
Q Consensus 321 N~p~~---LD~aLlrpgRFd~~I~v~~Pd~-~eR~~Il~~~l~~~-------------------------~l~~dvdl~~ 371 (612)
|.+.. +.+++++ ||...+.+++|+. +++.+|++.+.... .+.+++ .+.
T Consensus 157 N~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~ 233 (500)
T 3nbx_X 157 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FEL 233 (500)
T ss_dssp SSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHH
T ss_pred ccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHH
Confidence 75322 3458998 9999999999987 77889988654311 111111 222
Q ss_pred HHHh---------cCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 007214 372 LVFR---------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (612)
Q Consensus 372 La~~---------t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~ 409 (612)
++.. ..|.|++.+..+++.|...|..+++..|+.+|+.
T Consensus 234 i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 234 IFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 3322 3588999999999999999999999999999987
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=8.6e-16 Score=178.50 Aligned_cols=190 Identities=18% Similarity=0.203 Sum_probs=130.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeE
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVF 234 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~ 234 (612)
..+..|++++|.++..+.+. ..+..+ .+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~---~~l~~~---------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVI---EVLSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHH---HHHHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhhCCCCCccCchHHHHHHH---HHHhCC---------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 34567999999986555444 443332 45679999999999999999999986 788888
Q ss_pred Eecccccch-hhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 007214 235 ASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (612)
Q Consensus 235 vs~s~~~~~-~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (612)
+++ ... .+....+++.+|..+....|+||||| +. ....+.|+..|+. ..
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---------~~~~~~L~~~l~~-------------~~ 291 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLAR-------------GE 291 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTTS-------------SS
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---------hhHHHHHHHHHhc-------------CC
Confidence 877 222 34556679999999999999999999 11 1123334333331 24
Q ss_pred EEEEEecCCCC-----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCC-----HHHHHHh-----cCC
Q 007214 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-----FEELVFR-----TVG 378 (612)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-----l~~La~~-----t~G 378 (612)
+.+|+|||..+ .+|++++| || ..|.|+.|+.+++.+||+.+.........++ +..++.. +.+
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~ 368 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred EEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccC
Confidence 79999999988 79999999 99 5699999999999999997765532222222 3334333 446
Q ss_pred CcHHHHHHHHHHHHHHHHHhC
Q 007214 379 FSGADIRNLVNESGIMSVRKG 399 (612)
Q Consensus 379 ~sgadL~~lv~~A~~~A~r~~ 399 (612)
+.+.....++.+|+..+..+.
T Consensus 369 ~~p~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 369 FLPDKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHHhhc
Confidence 778888889998887666543
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=3.3e-16 Score=147.90 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=105.7
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEEe
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~vs 236 (612)
+.+|++++|.++ +++.+...+... .+.++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~---~~~~l~~~l~~~---------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDT---EIRRAIQILSRR---------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHH---HHHHHHHHHTSS---------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchH---HHHHHHHHHhCC---------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 567999999885 445555555442 46789999999999999999999986 77888888
Q ss_pred cccccch---hhhhHHHHHHHHHHHhhc-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 237 GAEFTDS---EKSGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 237 ~s~~~~~---~~~~~~~ir~lF~~A~~~-~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
+..+... .+.....++.++..+... .|++|||||+|.+.+.+.... ......+.+...++. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~~l~~~~~~-------------~ 151 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-GALDAGNILKPMLAR-------------G 151 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-TSCCTHHHHHHHHHT-------------T
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-cchHHHHHHHHHHhc-------------C
Confidence 7776432 233445577777776654 689999999999964432111 111123333333332 1
Q ss_pred cEEEEEecCCCC-----CccccccCCCceeEEEEeCCCC
Q 007214 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPD 346 (612)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd 346 (612)
.+++|++||.+. .+|+++++ ||+. +.++.|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 368888998765 68999999 9984 9999986
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.63 E-value=5.8e-16 Score=182.21 Aligned_cols=202 Identities=16% Similarity=0.198 Sum_probs=132.4
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEE
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~v 235 (612)
.+.+|++++|.++ +++.++..+... .+.++||+||||||||++|+++|+++ +.+++++
T Consensus 165 r~~~ld~viGr~~---~i~~l~~~l~~~---------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 165 AEGKLDPVIGRDE---EIRRVIQILLRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HTTCSCCCCSCHH---HHHHHHHHHHCS---------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred hcCCCcccCCcHH---HHHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 4578999999984 445555554332 35679999999999999999999987 8899999
Q ss_pred ecccccch---hhhhHHHHHHHHHHHhhc-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 236 SGAEFTDS---EKSGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 236 s~s~~~~~---~~~~~~~ir~lF~~A~~~-~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
+++.+... .+....+++.+|..+... .|+||||||+|.+.+..... ......+.|...+..
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--g~~~~~~~L~~~l~~------------- 297 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE--GAVDAGNMLKPALAR------------- 297 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHHT-------------
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc--chHHHHHHHHHHHhC-------------
Confidence 99888632 345667899999998874 78999999999997543221 112233344444432
Q ss_pred ccEEEEEecCCCC----CccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC------CCCccCCHHHHHHh-----c
Q 007214 312 QAVIFICATNRPD----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK------QLAEDVNFEELVFR-----T 376 (612)
Q Consensus 312 ~~ViVIaaTN~p~----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~------~l~~dvdl~~La~~-----t 376 (612)
..+.+|++||.++ .+|++|.| ||+. +.++.|+.+++.+|++.++... .+. +..+..++.. +
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYIT 373 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCC
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcc
Confidence 1367888888765 47999999 9985 9999999999999998665422 222 2224444443 4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 007214 377 VGFSGADIRNLVNESGIMSVRK 398 (612)
Q Consensus 377 ~G~sgadL~~lv~~A~~~A~r~ 398 (612)
..+.+.....++.+|+..+..+
T Consensus 374 ~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp SSCTHHHHHHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHHHHHHhh
Confidence 5677888889999888776654
No 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5e-16 Score=162.27 Aligned_cols=137 Identities=7% Similarity=0.129 Sum_probs=101.9
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc----------CCCeeEEecccccchh-----------------hhhHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAEFTDSE-----------------KSGAARINEM 254 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~~i~vs~s~~~~~~-----------------~~~~~~ir~l 254 (612)
..|.+++|+||||||||++++++++++ ++.+++++|..+.... +.....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 467899999999999999999999988 3568899988765421 1123457788
Q ss_pred HHHH--hhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCC----ccc
Q 007214 255 FSIA--RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE----LDL 328 (612)
Q Consensus 255 F~~A--~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~----LD~ 328 (612)
|... ....++|++|||+|.+. . ...+..|+..... . ...++||+++|..+. |++
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-~--------q~~L~~l~~~~~~-~----------~s~~~vI~i~n~~d~~~~~L~~ 182 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-S--------EKILQYFEKWISS-K----------NSKLSIICVGGHNVTIREQINI 182 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-C--------THHHHHHHHHHHC-S----------SCCEEEEEECCSSCCCHHHHHT
T ss_pred HHHhhhccCCceEEEEecHHHhh-c--------chHHHHHHhcccc-c----------CCcEEEEEEecCcccchhhcch
Confidence 8875 35668999999999995 1 2355666654321 1 234899999998764 456
Q ss_pred cccCCCcee-EEEEeCCCCHHHHHHHHHHHhcC
Q 007214 329 EFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAG 360 (612)
Q Consensus 329 aLlrpgRFd-~~I~v~~Pd~~eR~~Il~~~l~~ 360 (612)
++++ ||. ..|.|++++.++..+|++..+..
T Consensus 183 ~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 183 MPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 6666 886 68999999999999999977754
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.4e-15 Score=155.20 Aligned_cols=203 Identities=14% Similarity=0.172 Sum_probs=140.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEecc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s 238 (612)
+..+.+|++++|.+++++.|...+. .. +.|. +||+||||||||++|+++|+++ +.+++.++++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~---~~--------~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAK---DG--------NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHH---SC--------CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHH---cC--------CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 4567889999999987776666543 21 2344 9999999999999999999885 4567778776
Q ss_pred cccchhhhhHHHHHHHHHHHh-------hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 239 EFTDSEKSGAARINEMFSIAR-------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 239 ~~~~~~~~~~~~ir~lF~~A~-------~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
+... ...++.++.... ...++||+|||+|.+.. ...+.|+..++...
T Consensus 82 ~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~~----------- 135 (323)
T 1sxj_B 82 DDRG-----IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------GAQQALRRTMELYS----------- 135 (323)
T ss_dssp SCCS-----HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH----------HHHHTTHHHHHHTT-----------
T ss_pred cccC-----hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH----------HHHHHHHHHHhccC-----------
Confidence 5322 233455554443 23479999999998842 23455666665422
Q ss_pred ccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHH
Q 007214 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNE 390 (612)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~ 390 (612)
.++.+|++||.+..+++++.+ |+. .+.+++|+.++..++++.++...... ++..+..++..+.| +++.+.++++.
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 236788888999999999998 874 89999999999999998876533221 22236677877755 55556666655
Q ss_pred HHHHHHHhCCCCccHHHHHHHHH
Q 007214 391 SGIMSVRKGHSKIQQQDIVDVLD 413 (612)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~ 413 (612)
+... . ..|+.+++.+++.
T Consensus 212 ~~~~---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 212 TVAG---H--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHH---H--SSBCHHHHHHHHT
T ss_pred HHhc---C--CCcCHHHHHHHHC
Confidence 4422 1 4588888877654
No 71
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.63 E-value=6.8e-15 Score=155.29 Aligned_cols=204 Identities=20% Similarity=0.262 Sum_probs=144.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (612)
+..+.+|++++|.+++.+.|...+.. .+.+..+||+||||||||++|+++|+.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 45677899999999877777665542 1345689999999999999999999987542
Q ss_pred ------------eeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 232 ------------~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
++.++... ..+...++.+++.+.. ..+.||+|||+|.+.. ...+.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~Ll~~ 142 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS-----RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------HSFNALLKT 142 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC-----SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH----------HHHHHHHHH
T ss_pred HHHHHhccCCCceEEecccc-----cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH----------HHHHHHHHH
Confidence 12222211 0112236666666543 3468999999998832 356777777
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (612)
++... .++++|++||.+..+++++++ |+ ..+.+++|+.++..++++.++...... .+..+..++.
T Consensus 143 le~~~-----------~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 143 LEEPP-----------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHSCC-----------SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HhcCC-----------CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 76532 247888888988899999988 77 789999999999999999877543322 1223667888
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al 412 (612)
.+.| +++++.++++.+...+ ...|+.+++.+++
T Consensus 209 ~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 209 AAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 8766 7888888888775432 3568888876654
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.62 E-value=2.3e-15 Score=152.40 Aligned_cols=212 Identities=19% Similarity=0.207 Sum_probs=119.6
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC---CCeeEEecccccchh
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDSE 244 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g---~~~i~vs~s~~~~~~ 244 (612)
.+|++++|.+...+.+.+.+..... .+.++||+||||||||++|++++..+. .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999998766665555543321 246899999999999999999998874 789999999875431
Q ss_pred hhhH-------------HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 007214 245 KSGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (612)
Q Consensus 245 ~~~~-------------~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (612)
.... ......|..+ .+++|||||+|.+.. ..+..|+..++...-..........
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM----------MVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH----------HHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH----------HHHHHHHHHHHhCCeecCCCccccc
Confidence 1100 0001123333 357999999998842 2345566655532111000011123
Q ss_pred ccEEEEEecCCC-------CCccccccCCCceeEEEEeCCCCHHH----HHHHHHHHhc----CCCCC--ccCC---HHH
Q 007214 312 QAVIFICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQ----RVQIFDVHSA----GKQLA--EDVN---FEE 371 (612)
Q Consensus 312 ~~ViVIaaTN~p-------~~LD~aLlrpgRFd~~I~v~~Pd~~e----R~~Il~~~l~----~~~l~--~dvd---l~~ 371 (612)
.++.+|+|||.+ ..++++|.+ ||.. +.+..|+..+ ...+++.++. ..... ..++ +..
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 457899999985 246778887 8853 3444444443 3444443332 11111 1222 344
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 372 La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
|.......+.++|.++++.+...+ ....|+.+|+
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 555543457789999999887655 2345665554
No 73
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=2e-15 Score=156.02 Aligned_cols=202 Identities=18% Similarity=0.208 Sum_probs=137.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-----CCeeEEecc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-----~~~i~vs~s 238 (612)
+..+.+|++++|++++++.+...+.. . +. .++||+||||||||++|+++|+++. .+++.++++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~---~--------~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT---G--------SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH---T--------CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc---C--------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 56678899999999887777665542 1 12 2499999999999999999999863 346777766
Q ss_pred cccchhhhhHHHHHHHHHH-Hh-----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 239 EFTDSEKSGAARINEMFSI-AR-----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 239 ~~~~~~~~~~~~ir~lF~~-A~-----~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
+.... ..++..+.. +. ...+.+|+|||+|.+.. ...+.|+..++... .
T Consensus 86 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~~-----------~ 139 (327)
T 1iqp_A 86 DERGI-----NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ----------DAQQALRRTMEMFS-----------S 139 (327)
T ss_dssp CHHHH-----HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTT-----------T
T ss_pred ccCch-----HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH----------HHHHHHHHHHHhcC-----------C
Confidence 53221 112222211 11 14578999999998842 24566666666432 2
Q ss_pred cEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHHHH
Q 007214 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (612)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~~A 391 (612)
++.+|++||.+..+++++.+ |+. .+.+++|+.++..++++..+...... ++..+..++..+.| +.+.+.++++.+
T Consensus 140 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 140 NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp TEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 36788889999999999998 886 79999999999999999877654432 22236677777655 666666666644
Q ss_pred HHHHHHhCCCCccHHHHHHHH
Q 007214 392 GIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al 412 (612)
.. ....|+.+++.+++
T Consensus 216 ~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 216 AA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HT-----TCSEECHHHHHHHT
T ss_pred Hh-----cCCCCCHHHHHHHH
Confidence 42 22357777765543
No 74
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=1e-16 Score=181.19 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=130.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE----ecccccchhh----hhHHH-HHHHHHHHhhcCCeEEEEccchhh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA----SGAEFTDSEK----SGAAR-INEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v----s~s~~~~~~~----~~~~~-ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
..++||+||||||||++|+++|+.++.+++.. ++..+..... .+... ....+..| ..+|+||||||.+
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l 403 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKM 403 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhC
Confidence 34799999999999999999999887665442 2233322210 00000 01122233 3479999999988
Q ss_pred hccCCCCChhHHHHHHHHHHHhcCCccc--CCcccccccccEEEEEecCCCC-------------CccccccCCCceeE-
Q 007214 275 AGRHARKDPRRRATFEALIAQLDGDKER--TGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRIDR- 338 (612)
Q Consensus 275 ~~~~~~~~~~~~~~l~~LL~~ld~~~~~--~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRFd~- 338 (612)
.. ...+.|+..|+...-. ........+.++.||+|||++. .|+++|++ |||.
T Consensus 404 ~~----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~ 471 (595)
T 3f9v_A 404 RD----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLI 471 (595)
T ss_dssp CS----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCC
T ss_pred CH----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEE
Confidence 42 2456777777754321 1111233445689999999986 89999999 9985
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCC--------------------------CccCCHHHHHHh--------------cCC
Q 007214 339 RLYIGLPDAKQRVQIFDVHSAGKQL--------------------------AEDVNFEELVFR--------------TVG 378 (612)
Q Consensus 339 ~I~v~~Pd~~eR~~Il~~~l~~~~l--------------------------~~dvdl~~La~~--------------t~G 378 (612)
.+..+.|+.+ ...|.++.+..... -.+...+.|... +.+
T Consensus 472 ~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~ 550 (595)
T 3f9v_A 472 FILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPIL 550 (595)
T ss_dssp EEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBC
T ss_pred EEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 5666778888 88888766643220 011112333333 357
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 379 ~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
.|.+.+.++++.|...|..+++..|+.+|+.+|+.-
T Consensus 551 ~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 551 ITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp SSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999999864
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=5.2e-15 Score=174.07 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=138.5
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh
Q 007214 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (612)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~ 246 (612)
+++|+|++++.+.+...+...+..... ..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 567899988887777776653211000 01233579999999999999999999988 789999999988764211
Q ss_pred -----------hHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 247 -----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 247 -----------~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
+......+....+...+++|||||+|.+. ...++.|+..|+......+..+...-.+++
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~----------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH----------PDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC----------HHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC----------HHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 11122334444455557999999999873 247788888888643221111111224688
Q ss_pred EEEecCCC--------------------------CCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC-------C
Q 007214 316 FICATNRP--------------------------DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-------Q 362 (612)
Q Consensus 316 VIaaTN~p--------------------------~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-------~ 362 (612)
||+|||.. ..+.|+|+. ||+..+.+.+|+.++...|++.++... .
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~ 781 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKR 781 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999972 235667776 999999999999999999998776521 1
Q ss_pred CC---ccCCHHHHHHhcC--CCcHHHHHHHHHHHHHHH
Q 007214 363 LA---EDVNFEELVFRTV--GFSGADIRNLVNESGIMS 395 (612)
Q Consensus 363 l~---~dvdl~~La~~t~--G~sgadL~~lv~~A~~~A 395 (612)
.. .+.-+..|+.... .++.++|.++++.+...+
T Consensus 782 ~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 782 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp CEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred ceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 11 1112455665544 567778888887765443
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.55 E-value=8.2e-15 Score=152.31 Aligned_cols=208 Identities=20% Similarity=0.232 Sum_probs=125.4
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhh-
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG- 247 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~- 247 (612)
+++|.+...+.+.+.+.... ..+.+|||+||||||||++|++++... +.||+.++|+.+.......
T Consensus 3 ~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHH
Confidence 57788766555555554432 245689999999999999999999865 6899999999876431110
Q ss_pred -----------H-HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 248 -----------A-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 248 -----------~-~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
+ ......|..|. +++|||||||.+.. .....|+..++...-...........++.
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r 139 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP----------LMQVRLLRAIQEREVQRVGSNQTISVDVR 139 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH----------HHHHHHHHHHHSSBCCBTTBCCCCBCCCE
T ss_pred hcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH----------HHHHHHHHHHhcCEeeecCCcccccCCeE
Confidence 0 01223455553 46999999998842 24566777776543211111122345689
Q ss_pred EEEecCCC-------CCccccccCCCceeEEEEeCCCCHHHH----HHHHHHHhcC----CCC-CccC---CHHHHHHhc
Q 007214 316 FICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQR----VQIFDVHSAG----KQL-AEDV---NFEELVFRT 376 (612)
Q Consensus 316 VIaaTN~p-------~~LD~aLlrpgRFd~~I~v~~Pd~~eR----~~Il~~~l~~----~~l-~~dv---dl~~La~~t 376 (612)
||+|||.+ ..+++.|.. ||. .+.+..|+..+| ..+++.++.. ... ...+ .+..|....
T Consensus 140 iI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 140 LIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp EEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred EEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 99999985 134555655 664 455555555544 3355544321 110 1112 255566665
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 377 VGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 377 ~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
..-+.++|.++++.|...+ ....|+.+|+
T Consensus 217 wpGnvReL~~~l~~~~~~~---~~~~i~~~~l 245 (304)
T 1ojl_A 217 WPGNIRELENAIERAVVLL---TGEYISEREL 245 (304)
T ss_dssp CSSHHHHHHHHHHHHHHHC---CSSSBCGGGS
T ss_pred CCCCHHHHHHHHHHHHHhC---CCCcccHHhh
Confidence 3447788999998887654 2345665554
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=1e-14 Score=153.40 Aligned_cols=206 Identities=16% Similarity=0.139 Sum_probs=134.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-----CeeEEecc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-----PFVFASGA 238 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-----~~i~vs~s 238 (612)
+..+.+|++++|++++.+.|...+. .. +.|. +||+||||||||++|+++|+.+.. .+..++++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~---~g--------~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVD---EG--------KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHH---TT--------CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHh---cC--------CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 5677899999999877776665543 21 2344 999999999999999999998632 35566655
Q ss_pred cccchhhhhHHHHHHHHHHHhh------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 239 EFTDSEKSGAARINEMFSIARR------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 239 ~~~~~~~~~~~~ir~lF~~A~~------~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
+... ...++........ ..+.|++|||+|.+.. ...+.|+..++....
T Consensus 86 ~~~~-----~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~~~----------- 139 (340)
T 1sxj_C 86 DDRG-----IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN----------AAQNALRRVIERYTK----------- 139 (340)
T ss_dssp SCCS-----HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----------HHHHHHHHHHHHTTT-----------
T ss_pred cccc-----HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----------HHHHHHHHHHhcCCC-----------
Confidence 4321 2233433332221 2368999999998842 235667776665332
Q ss_pred cEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCCccCCHHHHHHhcCCCcHHHHHHHHHH
Q 007214 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK--QLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (612)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~La~~t~G~sgadL~~lv~~ 390 (612)
.+.+|++||.+..+.+++++ |+. .+.+..++.++..+++...+... .+.+ ..+..++..+.| ..+.+.++++.
T Consensus 140 ~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G-~~r~~~~~l~~ 214 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG-DMRRVLNVLQS 214 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT-CHHHHHHHTTT
T ss_pred CeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHHHHHHH
Confidence 25677888999999999998 885 78999999999999988777433 3332 235566666544 44444444443
Q ss_pred HHHHHHHhCCCCccHHHHHHHH
Q 007214 391 SGIMSVRKGHSKIQQQDIVDVL 412 (612)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al 412 (612)
+...+...+...|+.+++.+++
T Consensus 215 ~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 215 CKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHhcCCcccccccHHHHHHHh
Confidence 3322211222368888876654
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=4.7e-14 Score=148.22 Aligned_cols=193 Identities=11% Similarity=0.109 Sum_probs=127.0
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC------------
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------ 230 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~------------ 230 (612)
++..+.+|++++|++++.+.+...+. +. .+.|. ++|+||||||||++++++|+++..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~--~~--------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD--QP--------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT--CT--------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh--hC--------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 35678899999999877665544330 21 13455 999999999999999999996421
Q ss_pred -----------------CeeEEecccccchhhhhHHHHHHHHHHHh--------------hcCCeEEEEccchhhhccCC
Q 007214 231 -----------------PFVFASGAEFTDSEKSGAARINEMFSIAR--------------RNAPAFVFVDEIDAIAGRHA 279 (612)
Q Consensus 231 -----------------~~i~vs~s~~~~~~~~~~~~ir~lF~~A~--------------~~~P~ILfIDEiD~l~~~~~ 279 (612)
+++.+++++... .....++..+..+. ...|.||+|||+|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~---- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGN---NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT---- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC----
T ss_pred ecccccccceeeeecccceEEecHhhcCC---cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC----
Confidence 122222221100 00012444444432 2357799999999862
Q ss_pred CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhc
Q 007214 280 RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 280 ~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (612)
....+.|+..++... .++.+|.+||.++.+.+++++ |+ ..+.+++|+.++..++++..+.
T Consensus 148 ------~~~~~~L~~~le~~~-----------~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 148 ------KDAQAALRRTMEKYS-----------KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp ------HHHHHHHHHHHHHST-----------TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhhc-----------CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHH
Confidence 124556666665432 236788889999999999998 88 7899999999999999998775
Q ss_pred CCCCC-c-cCCHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007214 360 GKQLA-E-DVNFEELVFRTVGFSGADIRNLVNESGIM 394 (612)
Q Consensus 360 ~~~l~-~-dvdl~~La~~t~G~sgadL~~lv~~A~~~ 394 (612)
...+. + +..+..++..+.| +.+++.++++.+...
T Consensus 208 ~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 208 NERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 43332 2 3346778877755 667777777765543
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.45 E-value=1.5e-12 Score=138.89 Aligned_cols=227 Identities=11% Similarity=0.077 Sum_probs=144.0
Q ss_pred ccccceecCcccHHHHHHHH-HHh-CCchhhhhcCCccCceEEE--EcCCCChHHHHHHHHHHHc---------CCCeeE
Q 007214 168 SMYKEVVLGGDVWDLLDELM-IYM-GNPMQYYERGVQFVRGVLL--SGPPGTGKTLFARTLAKES---------GLPFVF 234 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv-~~l-~~p~~~~~~g~~~p~gvLL--~GPPGTGKT~LAralA~e~---------g~~~i~ 234 (612)
...++++|.++..+.|...+ ... ..+ ...+..++| +||||||||++++++++++ +.++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 34478899986666665554 322 220 024568999 9999999999999998875 567888
Q ss_pred Eecccccchh-----------------hh-hHHHHHHHHHHHh-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 007214 235 ASGAEFTDSE-----------------KS-GAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (612)
Q Consensus 235 vs~s~~~~~~-----------------~~-~~~~ir~lF~~A~-~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ 295 (612)
++|....... +. .......+..... ...|++|+|||+|.+...+. . ....+..++..
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~---~~~~l~~l~~~ 167 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-I---AAEDLYTLLRV 167 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-S---CHHHHHHHHTH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-c---chHHHHHHHHH
Confidence 8875432110 00 0111222222222 35589999999999963211 1 12344555554
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCC---Ccc---ccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCC---CCCcc
Q 007214 296 LDGDKERTGIDRFSLRQAVIFICATNRPD---ELD---LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK---QLAED 366 (612)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD---~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~---~l~~d 366 (612)
+....... ...++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++..+... ....+
T Consensus 168 ~~~~~~~~------~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~ 239 (412)
T 1w5s_A 168 HEEIPSRD------GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEP 239 (412)
T ss_dssp HHHSCCTT------SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCH
T ss_pred HHhcccCC------CCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCCh
Confidence 44322000 013478888888665 344 55666 665569999999999999998665321 11122
Q ss_pred CCHHHHHHhcC------CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 367 VNFEELVFRTV------GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 367 vdl~~La~~t~------G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
..+..++..+. | .++.+.++++.|...|..++...++.+++..++..
T Consensus 240 ~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp HHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 23567777777 5 67788899999888888888888999998887765
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.42 E-value=5.9e-13 Score=150.84 Aligned_cols=224 Identities=18% Similarity=0.321 Sum_probs=137.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC---eeEEecccc
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEF 240 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---~i~vs~s~~ 240 (612)
+.++.+|++++|++.+.+.+...+. ....++|+||||||||++|+++|+.+... .+.+.+...
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 5667889999999877766555443 22479999999999999999999987532 122221111
Q ss_pred cch--------hhhh-------------------------------------------------HHHHHHHHHH------
Q 007214 241 TDS--------EKSG-------------------------------------------------AARINEMFSI------ 257 (612)
Q Consensus 241 ~~~--------~~~~-------------------------------------------------~~~ir~lF~~------ 257 (612)
... .+.. ......+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 100 0000 0001112210
Q ss_pred -----------------HhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC-C---------cccccc
Q 007214 258 -----------------ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT-G---------IDRFSL 310 (612)
Q Consensus 258 -----------------A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~-~---------~~~~~~ 310 (612)
.....+.+|||||+|.+. ....+.|+..|+...-.. + ......
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCC----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 011245699999999873 124566666665322110 0 001223
Q ss_pred cccEEEEEecCCC--CCccccccCCCcee---EEEEeCC--C-CHHHHHHHHHHHhcC-------CCCCccCCHHHHHHh
Q 007214 311 RQAVIFICATNRP--DELDLEFVRPGRID---RRLYIGL--P-DAKQRVQIFDVHSAG-------KQLAEDVNFEELVFR 375 (612)
Q Consensus 311 ~~~ViVIaaTN~p--~~LD~aLlrpgRFd---~~I~v~~--P-d~~eR~~Il~~~l~~-------~~l~~dvdl~~La~~ 375 (612)
+.++.||+|||+. +.++++|++ ||+ ..+.++. + +.+....+++...+. ..+. +..+..|.+.
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls-~eAl~~Li~~ 326 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFT-KEAVEEIVRE 326 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBB-HHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCC-HHHHHHHHHH
Confidence 4568999999986 679999999 996 4566543 2 345555555443321 1222 1224444443
Q ss_pred ---cCCC------cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 376 ---TVGF------SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 376 ---t~G~------sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
..|- +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 327 ~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 327 AQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 2563 79999999999999999899999999999999864
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.39 E-value=1.2e-13 Score=127.40 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=75.9
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHH
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~i 251 (612)
+++|.++..+.+.+.+.... ..+.+|||+||||||||++|++++...+ ||+.++|+.+.... .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------~ 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------P 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------H
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------h
Confidence 46788776666665554321 2346799999999999999999999888 99999998865432 4
Q ss_pred HHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 007214 252 NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (612)
Q Consensus 252 r~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (612)
..+|+.+. +++|||||+|.+.. . ....|+..++... ..++.+|+|||.+
T Consensus 68 ~~~~~~a~---~~~l~lDei~~l~~-------~---~q~~Ll~~l~~~~----------~~~~~iI~~tn~~ 116 (143)
T 3co5_A 68 MELLQKAE---GGVLYVGDIAQYSR-------N---IQTGITFIIGKAE----------RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHTT---TSEEEEEECTTCCH-------H---HHHHHHHHHHHHT----------TTTCEEEEEEEEC
T ss_pred hhHHHhCC---CCeEEEeChHHCCH-------H---HHHHHHHHHHhCC----------CCCEEEEEecCCC
Confidence 55666653 46999999998842 2 2334454444321 1236888888864
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.38 E-value=5.1e-12 Score=132.74 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=113.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------eeEEecccccchhhhhHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------~i~vs~s~~~~~~~~~~~~ir~lF~~ 257 (612)
+.|.++||+||||||||++|+++|+.+..+ ++.++..+- ....+...++.+.+.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLGVDAVREVTEK 99 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBCHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCCHHHHHHHHHH
Confidence 567889999999999999999999987542 222322100 011234457777777
Q ss_pred Hhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCC
Q 007214 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (612)
Q Consensus 258 A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (612)
+.. ..+.|++|||+|.+.. ...|.|+..++... .++++|.+||.++.+.+++++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~----------~a~naLLk~lEep~-----------~~~~~Il~t~~~~~l~~ti~S- 157 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD----------AAANALLKTLEEPP-----------AETWFFLATREPERLLATLRS- 157 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH----------HHHHHHHHHHTSCC-----------TTEEEEEEESCGGGSCHHHHT-
T ss_pred HhhccccCCcEEEEECchhhcCH----------HHHHHHHHHhcCCC-----------CCeEEEEEeCChHhCcHHHhh-
Confidence 653 3468999999999842 35688998887632 347888888999999999998
Q ss_pred CceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHH
Q 007214 334 GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESG 392 (612)
Q Consensus 334 gRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~ 392 (612)
|+ ..+.+++|+.++..++++... .+ ++..+..++..+.| +++.+.++++.+.
T Consensus 158 -Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 158 -RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp -TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred -cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccch
Confidence 88 579999999999999998765 22 22235667776655 5666666665443
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.38 E-value=9e-13 Score=121.67 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=76.8
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhhH
Q 007214 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA 248 (612)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~~ 248 (612)
+++|.+...+.+.+.+.... ..+..|||+||||||||++|++++... +.||+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 56787765555555444332 234679999999999999999999876 78999 999987655
Q ss_pred HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 007214 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (612)
Q Consensus 249 ~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (612)
......|..+. +++|||||+|.+.. .....|+..|.... .++.+|+|||.+
T Consensus 66 ~~~~~~~~~a~---~g~l~ldei~~l~~----------~~q~~Ll~~l~~~~-----------~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 PQLNDFIALAQ---GGTLVLSHPEHLTR----------EQQYHLVQLQSQEH-----------RPFRLIGIGDTS 116 (145)
T ss_dssp SCHHHHHHHHT---TSCEEEECGGGSCH----------HHHHHHHHHHHSSS-----------CSSCEEEEESSC
T ss_pred hhhhcHHHHcC---CcEEEEcChHHCCH----------HHHHHHHHHHhhcC-----------CCEEEEEECCcC
Confidence 22445666663 46899999998842 23455666663321 236788999874
No 84
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=107.59 Aligned_cols=74 Identities=23% Similarity=0.462 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 343 GLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 343 ~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
|+||.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++||..|+++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998888999999999999999999999999999999999999999999999999875
No 85
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.33 E-value=3.3e-12 Score=108.04 Aligned_cols=75 Identities=23% Similarity=0.457 Sum_probs=71.3
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 342 IGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
-.+||.++|.+||+.++++.++..++|+..||..|.||||+||.++|++|++.|+++....|+++||.+|++++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999888999999999999999999999999999999999989999999999999875
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.29 E-value=2.5e-11 Score=155.11 Aligned_cols=146 Identities=22% Similarity=0.292 Sum_probs=97.7
Q ss_pred cCceEEEEcCCCChHHHHHHHH-HHHcCCCeeEEecccccchhhhhHHHHHHHHHHHh---------------hcCCeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTL-AKESGLPFVFASGAEFTDSEKSGAARINEMFSIAR---------------RNAPAFV 266 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAral-A~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~---------------~~~P~IL 266 (612)
..+++||+||||||||++|+.+ +...+.+++.++++..... ..+...++... ...++||
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~-----~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT-----EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH-----HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH-----HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 4578999999999999999555 5445778888888776543 22333333321 1235899
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-----CccccccCCCceeEEEE
Q 007214 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLY 341 (612)
Q Consensus 267 fIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~ 341 (612)
||||+|.-...+ .+.......+.++++ ..++...... .+..-.++.+|||||+|. .|+++++| || ..+.
T Consensus 1341 FiDEinmp~~d~-yg~q~~lelLRq~le-~gg~yd~~~~-~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~ 1414 (2695)
T 4akg_A 1341 FCDEINLPKLDK-YGSQNVVLFLRQLME-KQGFWKTPEN-KWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILY 1414 (2695)
T ss_dssp EEETTTCSCCCS-SSCCHHHHHHHHHHH-TSSEECTTTC-CEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEE
T ss_pred Eecccccccccc-cCchhHHHHHHHHHh-cCCEEEcCCC-cEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEE
Confidence 999998643222 222233445555542 2232221111 111225689999999994 79999999 99 8899
Q ss_pred eCCCCHHHHHHHHHHHhc
Q 007214 342 IGLPDAKQRVQIFDVHSA 359 (612)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~ 359 (612)
++.|+.+++..|+..+++
T Consensus 1415 i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.25 E-value=8.3e-12 Score=153.54 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=102.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhC-C----------chhhhh------cCCc----------cCce--EEEEcCCC
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIYMG-N----------PMQYYE------RGVQ----------FVRG--VLLSGPPG 214 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~-~----------p~~~~~------~g~~----------~p~g--vLL~GPPG 214 (612)
....++|+||-|.+++|+.+.+.+.+.- . +..|.. .|.. +|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 4556999999999999998888877632 2 445555 3333 5566 99999999
Q ss_pred ChHHHHHHHHHHHc---CCCeeEEecccccch-------------hhh----hHHHHHHHHHHHhhcCCeEEEEccchhh
Q 007214 215 TGKTLFARTLAKES---GLPFVFASGAEFTDS-------------EKS----GAARINEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 215 TGKT~LAralA~e~---g~~~i~vs~s~~~~~-------------~~~----~~~~ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
||||+||+++|.+. |-|.++++..+.... .+. +++.++.+|..|+..+||+||+|++|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999998766 677778877764422 123 6778999999999999999999999999
Q ss_pred hccCC----CC---ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 007214 275 AGRHA----RK---DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (612)
Q Consensus 275 ~~~~~----~~---~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (612)
.+++. .+ ..-..+.++++|.+|++..... +|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~---------~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS---------NTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT---------TCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccC---------CeEEE-Eeccc
Confidence 87731 11 1234557999999999855443 36666 77874
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=1.8e-11 Score=116.36 Aligned_cols=134 Identities=15% Similarity=0.095 Sum_probs=84.3
Q ss_pred CCcccccceecC-cccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEeccc
Q 007214 165 DTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (612)
Q Consensus 165 ~~~~~f~dvvG~-~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~ 239 (612)
..+.+|+++++. ++.++.++.+..++.+. ....+.+++|+||||||||+|++++++.+ |..++++++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456789999874 34556666666665543 22346789999999999999999999876 77888888777
Q ss_pred ccchhhhhHH--HHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 007214 240 FTDSEKSGAA--RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (612)
Q Consensus 240 ~~~~~~~~~~--~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (612)
+......... ....++... ..|.+|+|||++... .+......+..++..... .+..+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~-----~~~~~~~~l~~ll~~~~~-------------~~~~ii 137 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER-----LSDWQRELISYIITYRYN-------------NLKSTI 137 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC-----CCHHHHHHHHHHHHHHHH-------------TTCEEE
T ss_pred HHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc-----CCHHHHHHHHHHHHHHHH-------------cCCCEE
Confidence 6544211100 011222222 357899999998542 233444555566655421 124677
Q ss_pred EecCCCC
Q 007214 318 CATNRPD 324 (612)
Q Consensus 318 aaTN~p~ 324 (612)
.|||.+.
T Consensus 138 ~tsn~~~ 144 (180)
T 3ec2_A 138 ITTNYSL 144 (180)
T ss_dssp EECCCCS
T ss_pred EEcCCCh
Confidence 7888753
No 89
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.22 E-value=2.4e-11 Score=103.16 Aligned_cols=71 Identities=23% Similarity=0.466 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 346 DAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 346 d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
|.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|.+++...|+++||..|++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999875
No 90
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=6.4e-11 Score=123.08 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=95.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc------CCCeeEEecccccchhhhhHHHHHHHHHHHhhc----CCeEEEEccchh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES------GLPFVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDA 273 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~------g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~----~P~ILfIDEiD~ 273 (612)
+..+|||||||+|||++|+++|+.+ ...++.++++.- ..+...++.+.+.+... ...|++|||+|.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 4589999999999999999999864 345666664421 12344578888877643 247999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCCCCHHHHHHH
Q 007214 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (612)
Q Consensus 274 l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~I 353 (612)
+. ....|.|+..|+... ..+++|.+||.+..+.+++++ | .+++++|+.++..++
T Consensus 94 lt----------~~a~naLLk~LEep~-----------~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 94 MT----------QQAANAFLKALEEPP-----------EYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDL 147 (305)
T ss_dssp BC----------HHHHHHTHHHHHSCC-----------TTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHH
T ss_pred hC----------HHHHHHHHHHHhCCC-----------CCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHH
Confidence 84 235788999988643 236777778889999999999 8 889999999999999
Q ss_pred HHHHh
Q 007214 354 FDVHS 358 (612)
Q Consensus 354 l~~~l 358 (612)
++..+
T Consensus 148 L~~~~ 152 (305)
T 2gno_A 148 VKEKI 152 (305)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98776
No 91
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.11 E-value=1.3e-10 Score=97.23 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 346 DAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 346 d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
|.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|.+++...|+++||..|+.++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 68999999999999999888999999999999999999999999999999999988999999999999864
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.04 E-value=4.8e-10 Score=120.18 Aligned_cols=213 Identities=21% Similarity=0.231 Sum_probs=121.1
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhh
Q 007214 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (612)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~ 246 (612)
|.+++|....-+.+.+.+..+.. ....||++|++|||||++|+++.... +.||+.++|+.+......
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45567765443444444433322 34568999999999999999998765 469999999987653211
Q ss_pred h------------H-HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 007214 247 G------------A-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (612)
Q Consensus 247 ~------------~-~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (612)
. + ......|+.|. ..+||||||+.+.. ..+..|+..|+...-...........+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 272 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSL----------EAQAKLLRVIESGKFYRLGGRKEIEVN 272 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCH----------HHHHHHHHHHHHSEECCBTCCSBEECC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 0 0 01224555553 35899999999842 245566666654221111111223346
Q ss_pred EEEEEecCCCCCccccccCCCceeE-------EEEeCCCCHHHHH----HHHHHHhc----CCCCC-ccCC---HHHHHH
Q 007214 314 VIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRV----QIFDVHSA----GKQLA-EDVN---FEELVF 374 (612)
Q Consensus 314 ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~----~Il~~~l~----~~~l~-~dvd---l~~La~ 374 (612)
+.||+|||.. +. .+.+.|+|.. .+.+..|...+|. .+++.++. ..... ..++ +..|..
T Consensus 273 ~rii~at~~~--l~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 273 VRILAATNRN--IK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 349 (387)
T ss_dssp CEEEEEESSC--HH-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred EEEEEeCCCC--HH-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 8899999973 21 1222344421 3455666665552 33343332 11111 1222 344444
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 007214 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (612)
Q Consensus 375 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~A 411 (612)
...--+.++|+|+++.|+..+ ....|+.+|+...
T Consensus 350 ~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 350 YPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp SCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 443335679999999988765 3357888887544
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.03 E-value=2.2e-10 Score=110.59 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=67.0
Q ss_pred CcccccceecCc-ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccccc
Q 007214 166 TKSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (612)
Q Consensus 166 ~~~~f~dvvG~~-e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~ 241 (612)
.+.+|+++++.+ ..++.+..+..++.+... ...+++++|+||||||||++|+++++++ +.++++++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 457899999876 444455666666543310 0124799999999999999999999877 7788889888765
Q ss_pred chhhhh--HHHHHHHHHHHhhcCCeEEEEccchhh
Q 007214 242 DSEKSG--AARINEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 242 ~~~~~~--~~~ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
...... ...+..++..... +.+|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 432110 0012233333332 359999999765
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.01 E-value=1.2e-09 Score=118.71 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=124.8
Q ss_pred eecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHH-HHHcCCCeeEEecccccchhhhhHH--
Q 007214 173 VVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTL-AKESGLPFVFASGAEFTDSEKSGAA-- 249 (612)
Q Consensus 173 vvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAral-A~e~g~~~i~vs~s~~~~~~~~~~~-- 249 (612)
|.|++++|..|.-.. .....+ ++..-+|||.|+||| ||++|+++ ++-+.. .+++++.. ....+....
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~-ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRR-TELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGG-CCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCC-CCccCceEEEE
Confidence 677777766553322 111111 233447999999999 99999999 665433 22222211 000000000
Q ss_pred -----H-HHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 007214 250 -----R-INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (612)
Q Consensus 250 -----~-ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (612)
. -...+..|. ..|+|||||+.+. ..++..|++.|+...-.-. .. ..+.++.||||+|..
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~----------~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEGAP----------EPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAAINPG 349 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTTCC----------HHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEEECCC
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhhCC----------HHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEEeCcc
Confidence 0 012223332 2599999999873 2367788888775432222 11 445678999999986
Q ss_pred C-----------CccccccCCCceeEEEE-eCCCCHHH-------------HHHHHHHHhc----CCCCCccCC--HHHH
Q 007214 324 D-----------ELDLEFVRPGRIDRRLY-IGLPDAKQ-------------RVQIFDVHSA----GKQLAEDVN--FEEL 372 (612)
Q Consensus 324 ~-----------~LD~aLlrpgRFd~~I~-v~~Pd~~e-------------R~~Il~~~l~----~~~l~~dvd--l~~L 372 (612)
+ .|++++++ |||..+. ++.|+.+. ..+++. +++ ...+.+++. +..+
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHH
Confidence 5 78889999 9987554 46666443 122221 222 111222110 1111
Q ss_pred ------H--H------hcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 373 ------V--F------RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 373 ------a--~------~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
. . ...|.|++.+..+++-|...|..+++..|+.+|+.+|+.=
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 1 0 2458899999999999999999999999999999999864
No 95
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.98 E-value=1.6e-10 Score=96.65 Aligned_cols=69 Identities=29% Similarity=0.462 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 007214 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (612)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (612)
++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++||..|+.++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 478999999999988888999999999999999999999999999999999999999999999998764
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.88 E-value=1e-07 Score=98.84 Aligned_cols=186 Identities=12% Similarity=0.110 Sum_probs=110.7
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc-----
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT----- 241 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~----- 241 (612)
....+.++|.++ ++..+.. +.. ..++|+||+|+|||+|++.++++.+.+++++++....
T Consensus 9 ~~~~~~~~gR~~---el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREK---EIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHH---HHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHH---HHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 334566788764 4455554 432 3799999999999999999999988788888876531
Q ss_pred ch---hhh---------------------------------------hHHHHHHHHHHHhhc--CCeEEEEccchhhhcc
Q 007214 242 DS---EKS---------------------------------------GAARINEMFSIARRN--APAFVFVDEIDAIAGR 277 (612)
Q Consensus 242 ~~---~~~---------------------------------------~~~~ir~lF~~A~~~--~P~ILfIDEiD~l~~~ 277 (612)
.. ... ....+..+++..... .|.+|+|||+|.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 00 000 001233444444332 3899999999998531
Q ss_pred CCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCcc---------ccccCCCceeEEEEeCCCCHH
Q 007214 278 HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD---------LEFVRPGRIDRRLYIGLPDAK 348 (612)
Q Consensus 278 ~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD---------~aLlrpgRFd~~I~v~~Pd~~ 348 (612)
. +......+..+.... .++.+|+|++....+. ..+ .||+...+.+++.+.+
T Consensus 153 ~---~~~~~~~l~~~~~~~---------------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~ 212 (357)
T 2fna_A 153 R---GVNLLPALAYAYDNL---------------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSRE 212 (357)
T ss_dssp T---TCCCHHHHHHHHHHC---------------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHH
T ss_pred C---chhHHHHHHHHHHcC---------------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHH
Confidence 0 111122333333321 1255666655432111 112 2476788999999999
Q ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHH
Q 007214 349 QRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (612)
Q Consensus 349 eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~ 390 (612)
+..+++...+.......+ +...+...|.|.. .-+..++..
T Consensus 213 e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 213 EAIEFLRRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHHH
Confidence 999999876542222222 2378888888864 446655543
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.87 E-value=3e-09 Score=98.80 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=47.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhh
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~ 275 (612)
....++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------HHHhCCCEEEEeCccccC
Confidence 34679999999999999999999877 777889988877654 112357899999998763
No 98
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.83 E-value=4.8e-09 Score=111.71 Aligned_cols=199 Identities=20% Similarity=0.227 Sum_probs=111.7
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEecccccchhhhhH
Q 007214 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTDSEKSGA 248 (612)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s~~~~~~~~~~ 248 (612)
.+++|.......+.+.+..+.. ....+|++|++||||+++|+++....+. +|+.++|+.+.+......
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3566776555555554443322 2345999999999999999999876654 399999998765421110
Q ss_pred -------------HHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 007214 249 -------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (612)
Q Consensus 249 -------------~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (612)
..-...|+.|.. ..||||||+.+.. ..+..|+..++...-...........++.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQ----------RVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCH----------HHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCH----------HHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 011234555533 4799999999842 34556666665432111111112234578
Q ss_pred EEEecCCCCCccccccCCCceeE-------EEEeCCCCHHHH----HHHHHHHhcC----CCCC-ccCC---HHHHHHhc
Q 007214 316 FICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQR----VQIFDVHSAG----KQLA-EDVN---FEELVFRT 376 (612)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR----~~Il~~~l~~----~~l~-~dvd---l~~La~~t 376 (612)
+|+|||.. +.. ....|+|.. .+.+..|...+| ..+++.++.. .... ..++ +..|....
T Consensus 266 ii~at~~~--l~~-~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 266 VISATNKN--LEE-EIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEEEESSC--HHH-HHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EEEecCCC--HHH-HHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 99999963 222 222344432 344445554444 3444444321 1111 1222 44555544
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 007214 377 VGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 377 ~G~sgadL~~lv~~A~~~A 395 (612)
---+.++|+|+++.|...+
T Consensus 343 wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHhC
Confidence 3336688889988877553
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.82 E-value=2.4e-09 Score=111.40 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=71.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEec--ccccchh-hhhHHHHHHHHHHHhhcCCeEEEEccchhhhc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG--AEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~--s~~~~~~-~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
|....+.++|+||||||||+||.++|.+.|.+.++++. .+..... ......+..+++...... +|+||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 44455668999999999999999999876655444444 3222211 222334455555555544 999999999854
Q ss_pred cCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccc
Q 007214 277 RHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330 (612)
Q Consensus 277 ~~~~--~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aL 330 (612)
.... ......+.+.+++..|.++.... ++.+|+++| +...|+++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~---------gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASR---------GCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHH---------TCEEEEECC-CSSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhC---------CCEEEEEeC-CcccchhH
Confidence 3221 01111345667777666543322 367888888 56666665
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.80 E-value=5.1e-09 Score=108.83 Aligned_cols=101 Identities=15% Similarity=0.250 Sum_probs=63.3
Q ss_pred CcccccceecCc-ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecccc
Q 007214 166 TKSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEF 240 (612)
Q Consensus 166 ~~~~f~dvvG~~-e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~~ 240 (612)
.+.+|+++++.+ ..+..+..+..|+.+.. ...+.+++|+||||||||+||+++|.++ |.++++++++++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 347899998765 33445555555655431 1135799999999999999999998754 588888888776
Q ss_pred cchhhh--hHHHHHHHHHHHhhcCCeEEEEccchhh
Q 007214 241 TDSEKS--GAARINEMFSIARRNAPAFVFVDEIDAI 274 (612)
Q Consensus 241 ~~~~~~--~~~~ir~lF~~A~~~~P~ILfIDEiD~l 274 (612)
...... ....+...+.... .+.+|+|||++..
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 543211 0111122222222 3469999999755
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.79 E-value=3.8e-07 Score=94.33 Aligned_cols=189 Identities=17% Similarity=0.116 Sum_probs=106.2
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc-----
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT----- 241 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~----- 241 (612)
...-+.++|.++..+.|.+.+. . | +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~---~-------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLE---N-------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHH---H-------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHh---c-------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 3344567888755444444332 1 1 5799999999999999999999876 6777765431
Q ss_pred -ch---h------------------------hh----hHHHHHHHHH----HHhhcCCeEEEEccchhhhccCCCCChhH
Q 007214 242 -DS---E------------------------KS----GAARINEMFS----IARRNAPAFVFVDEIDAIAGRHARKDPRR 285 (612)
Q Consensus 242 -~~---~------------------------~~----~~~~ir~lF~----~A~~~~P~ILfIDEiD~l~~~~~~~~~~~ 285 (612)
.. . +. ....+..+++ .+....|.+|+|||+|.+.......+...
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 151 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKEL 151 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhH
Confidence 00 0 00 0011222322 23323489999999999853100011122
Q ss_pred HHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCc---------cccccCCCceeEEEEeCCCCHHHHHHHHHH
Q 007214 286 RATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL---------DLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (612)
Q Consensus 286 ~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L---------D~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~ 356 (612)
...+..++... .++.+|.|+.....+ ...+. ||+...+.+++.+.++-.+++..
T Consensus 152 ~~~L~~~~~~~---------------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 152 LALFAYAYDSL---------------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp HHHHHHHHHHC---------------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhc---------------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHH
Confidence 22233332221 124555555432111 11222 46767899999999999999987
Q ss_pred HhcCCCCC-ccCCHHHHHHhcCCCcHHHHHHHHH
Q 007214 357 HSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVN 389 (612)
Q Consensus 357 ~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~ 389 (612)
.+...... .+..+..+...|.|.. .-+..++.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 215 GFREVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 65433221 2234667777888754 44555544
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.77 E-value=1.4e-07 Score=121.19 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=115.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD 282 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~ 282 (612)
...|+++.||||||||.+++++|+.+|.+++.++|++-.... .+..+|..+.... +.+++||++.+.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~-----~lg~~~~g~~~~G-aw~~~DE~nr~~------- 710 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQ-----VLSRLLVGITQIG-AWGCFDEFNRLD------- 710 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHH-----HHHHHHHHHHHHT-CEEEEETTTSSC-------
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChh-----HhhHHHHHHHhcC-CEeeehhhhhcC-------
Confidence 346899999999999999999999999999999999866542 3466676666553 799999999763
Q ss_pred hhHHHHHHHHHHH----hcCCccc--CCcccccccccEEEEEecCC----CCCccccccCCCceeEEEEeCCCCHHHHHH
Q 007214 283 PRRRATFEALIAQ----LDGDKER--TGIDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (612)
Q Consensus 283 ~~~~~~l~~LL~~----ld~~~~~--~~~~~~~~~~~ViVIaaTN~----p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~ 352 (612)
.+....+++.+.. +...... .....+....++.|++|.|. ...|+++|.+ || +.+.+..||.+...+
T Consensus 711 ~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 711 EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 2333444333332 2111100 01112344556788999984 4578999998 99 789999999999888
Q ss_pred HHHHHhcCCCCCccC-----CHHHHHH-h-----cCCCcHHHHHHHHHHHHHHH
Q 007214 353 IFDVHSAGKQLAEDV-----NFEELVF-R-----TVGFSGADIRNLVNESGIMS 395 (612)
Q Consensus 353 Il~~~l~~~~l~~dv-----dl~~La~-~-----t~G~sgadL~~lv~~A~~~A 395 (612)
|+-... +...+... .+-.+++ . ...|.-+.+..+++.|....
T Consensus 788 i~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 788 MILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 864322 21111110 1111111 1 23477889999888776543
No 103
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.74 E-value=8e-09 Score=110.26 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=78.8
Q ss_pred cCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhc-c
Q 007214 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAG-R 277 (612)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~-~ 277 (612)
++++.+..++|+||||+||||+++++++..+..++.+...+ ... ...+..+ ...+++++||++.+.. .
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~--~~~---~~~lg~~------~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--DRL---NFELGVA------IDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT--TTH---HHHHGGG------TTCSCEEETTCCCSTTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc--hhH---HHHHHHh------cchhHHHHHHHHHHHHHH
Confidence 47788889999999999999999999998876655433222 000 0011111 2346789999998864 2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCC
Q 007214 278 HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (612)
Q Consensus 278 ~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (612)
+.............+...+++. +.|+++||+++.+ +++++|||++..+....
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~--------------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGS--------------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCS--------------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhccccCcchHHHHHHHHhcCC--------------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2111111111334555556652 4678889999999 79999999988776644
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.71 E-value=1.8e-08 Score=98.20 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=81.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH--------cC-CCeeEEecccccchhh-----------hhHH--HHHHHHHHH--h
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE--------SG-LPFVFASGAEFTDSEK-----------SGAA--RINEMFSIA--R 259 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e--------~g-~~~i~vs~s~~~~~~~-----------~~~~--~ir~lF~~A--~ 259 (612)
+-..|++|+||||||++|.+.+.. .| .+++..++.++..... .... ....+++.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 446899999999999999886433 45 7777777665532110 0000 112333332 2
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEE
Q 007214 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRR 339 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~ 339 (612)
...++||+|||++.+.+.+....+. ..++..+.... ..++-+|.+|+.+..|+.++++ |++.+
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~-----~rll~~l~~~r----------~~~~~iil~tq~~~~l~~~lr~--ri~~~ 147 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI-----PENVQWLNTHR----------HQGIDIFVLTQGPKLLDQNLRT--LVRKH 147 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC-----CHHHHGGGGTT----------TTTCEEEEEESCGGGBCHHHHT--TEEEE
T ss_pred ccCceEEEEEChhhhccCccccchh-----HHHHHHHHhcC----------cCCeEEEEECCCHHHHhHHHHH--HhheE
Confidence 3447899999999996543211111 12444444321 1235778888889999999988 99999
Q ss_pred EEeCCCCHHHH
Q 007214 340 LYIGLPDAKQR 350 (612)
Q Consensus 340 I~v~~Pd~~eR 350 (612)
+++..|....+
T Consensus 148 ~~l~~~~~~~~ 158 (199)
T 2r2a_A 148 YHIASNKMGMR 158 (199)
T ss_dssp EEEEECSSCCE
T ss_pred EEEcCcccCcc
Confidence 99988754433
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.43 E-value=2.4e-07 Score=115.63 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch-----hh------------hhHHHHHHHHHHHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS-----EK------------SGAARINEMFSIAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~-----~~------------~~~~~ir~lF~~A~ 259 (612)
|++.+++++|+||||||||+||.+++.++ |....+++..+.... .+ .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47788999999999999999999997764 667777776654321 11 22345677777888
Q ss_pred hcCCeEEEEccchhhhccC----CCC--Ch-hHHHHHHHHHHHhcCCcccC
Q 007214 260 RNAPAFVFVDEIDAIAGRH----ARK--DP-RRRATFEALIAQLDGDKERT 303 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~~~----~~~--~~-~~~~~l~~LL~~ld~~~~~~ 303 (612)
..+|++||||+++.+.+.. ..+ +. ...+.++++|.+|.+.....
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~ 1553 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 1553 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999887632 111 11 13556788888887755443
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.36 E-value=7.8e-07 Score=86.77 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=27.0
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
.+..+++|+|||||||||++|.++|+.++-.++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 334568999999999999999999998864443
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.36 E-value=9.3e-07 Score=114.35 Aligned_cols=144 Identities=22% Similarity=0.304 Sum_probs=91.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-CCCeeEEecccccchhhhhHHHHHHHHHHH----h------------hcCCeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFTDSEKSGAARINEMFSIA----R------------RNAPAFV 266 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~-g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A----~------------~~~P~IL 266 (612)
.+.|||+||||||||++++.....+ +.+++.++++.-... ..+...++.. + ....+|+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta-----~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP-----ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH-----HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH-----HHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 4679999999999998876654443 667788888775543 2233333321 0 1223799
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-----CccccccCCCceeEEEE
Q 007214 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLY 341 (612)
Q Consensus 267 fIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~ 341 (612)
||||++.-. ...-+....-..+.+++..- ++....... +..-.++.+|||+|.|. .|+++++| ||. .+.
T Consensus 1379 FiDDiNmp~-~D~yGtQ~~ielLrqlld~~-g~yd~~~~~-~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi~ 1452 (3245)
T 3vkg_A 1379 FCDEINLPS-TDKYGTQRVITFIRQMVEKG-GFWRTSDHT-WIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-ILL 1452 (3245)
T ss_dssp EETTTTCCC-CCTTSCCHHHHHHHHHHHHS-EEEETTTTE-EEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EEE
T ss_pred EecccCCCC-ccccccccHHHHHHHHHHcC-CeEECCCCe-EEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EEE
Confidence 999998432 11122223334455555431 222211111 22235689999999883 58999999 994 599
Q ss_pred eCCCCHHHHHHHHHHHh
Q 007214 342 IGLPDAKQRVQIFDVHS 358 (612)
Q Consensus 342 v~~Pd~~eR~~Il~~~l 358 (612)
++.|+.+....|+..++
T Consensus 1453 i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999987554
No 108
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.22 E-value=4.3e-06 Score=87.40 Aligned_cols=176 Identities=12% Similarity=0.087 Sum_probs=109.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CC-CeeEEecccccchhhhhHHHHHHHHHHHhh----cCCeEEEEccchh-
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GL-PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDA- 273 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~-~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~----~~P~ILfIDEiD~- 273 (612)
.+..+|||||+|+||++.++++++.+ +. ++..+... . ...++.+.+.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~-----~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P-----NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T-----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C-----CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 45689999999999999999998754 32 22222111 1 1224455544432 3457999999987
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC------CCccccccCCCceeEEEEeCCCCH
Q 007214 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP------DELDLEFVRPGRIDRRLYIGLPDA 347 (612)
Q Consensus 274 l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p------~~LD~aLlrpgRFd~~I~v~~Pd~ 347 (612)
+.. ...+.|+..++.... ++++|.+|+.+ ..+.+++.+ |. ..+.+.+|+.
T Consensus 89 l~~----------~~~~aLl~~le~p~~-----------~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~ 144 (343)
T 1jr3_D 89 PNA----------AINEQLLTLTGLLHD-----------DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQ 144 (343)
T ss_dssp CCT----------THHHHHHHHHTTCBT-----------TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCT
T ss_pred CCh----------HHHHHHHHHHhcCCC-----------CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCH
Confidence 631 145778877765332 23444444432 346677776 65 5789999999
Q ss_pred HHHHHHHHHHhcCCCCCcc-CCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 007214 348 KQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (612)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl~~Al~~ 414 (612)
.+..+.++..+....+.-+ ..+..|+..+.| +.+++.+.++..+..+ +...|+.+++.+.+..
T Consensus 145 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp THHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 9999888877765543322 225566665544 5555666655544432 3457999998777654
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.16 E-value=5.9e-06 Score=107.08 Aligned_cols=136 Identities=20% Similarity=0.199 Sum_probs=94.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccchhhhhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCCh
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP 283 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~~~~~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~ 283 (612)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-.... .+..+|.-+... .+..++||++.+- .
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~-----~~g~i~~G~~~~-GaW~cfDEfNrl~-------~ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQ-----AMSRIFVGLCQC-GAWGCFDEFNRLE-------E 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHH-----HHHHHHHHHHHH-TCEEEEETTTSSC-------H
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHH-----HHHHHHhhHhhc-CcEEEehhhhcCC-------H
Confidence 35778999999999999999999999999999999866543 244556555544 3688999999772 2
Q ss_pred hHHHHHHHHHHHh----cCCcccCC---cccccccccEEEEEecCC----CCCccccccCCCceeEEEEeCCCCHHHHHH
Q 007214 284 RRRATFEALIAQL----DGDKERTG---IDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (612)
Q Consensus 284 ~~~~~l~~LL~~l----d~~~~~~~---~~~~~~~~~ViVIaaTN~----p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~ 352 (612)
+.-..+.+.+..+ ......-. ...+..+.++.|++|.|. ...|+++|.. || +.|.+..||.+...+
T Consensus 671 ~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~e 747 (3245)
T 3vkg_A 671 RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQ 747 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHH
Confidence 3333333322211 11110000 122444566889999984 3579999998 99 779999999999888
Q ss_pred HHH
Q 007214 353 IFD 355 (612)
Q Consensus 353 Il~ 355 (612)
|+-
T Consensus 748 i~L 750 (3245)
T 3vkg_A 748 VML 750 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.12 E-value=7.3e-06 Score=83.12 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGL 230 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (612)
..++++||||||||||++|+++|+..+.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3468999999999999999999997654
No 111
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.09 E-value=7.5e-06 Score=89.32 Aligned_cols=127 Identities=16% Similarity=0.285 Sum_probs=96.0
Q ss_pred CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe---------cC---CCCCccccc
Q 007214 263 PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA---------TN---RPDELDLEF 330 (612)
Q Consensus 263 P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa---------TN---~p~~LD~aL 330 (612)
|.|+||||+|.+. ....+.|+..|+... .+++|+++ |+ .++.|++.+
T Consensus 296 ~~VliIDEa~~l~----------~~a~~aLlk~lEe~~-----------~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i 354 (456)
T 2c9o_A 296 PGVLFVDEVHMLD----------IECFTYLHRALESSI-----------APIVIFASNRGNCVIRGTEDITSPHGIPLDL 354 (456)
T ss_dssp ECEEEEESGGGCB----------HHHHHHHHHHTTSTT-----------CCEEEEEECCSEEECBTTSSCEEETTCCHHH
T ss_pred ceEEEEechhhcC----------HHHHHHHHHHhhccC-----------CCEEEEecCCccccccccccccccccCChhH
Confidence 4699999999983 347788888887532 23444454 33 267889999
Q ss_pred cCCCceeEEEEeCCCCHHHHHHHHHHHhcC--CCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 007214 331 VRPGRIDRRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (612)
Q Consensus 331 lrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~dl 408 (612)
++ ||.. +.+++|+.++..++++..+.. ..+.+ ..+..++..+..-+++..-++++.|...|..++...|+.+|+
T Consensus 355 ~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~-~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v 430 (456)
T 2c9o_A 355 LD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISE-EALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHV 430 (456)
T ss_dssp HT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHH
T ss_pred Hh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHH
Confidence 99 9976 699999999999999877642 22222 235667766623388889999999999999999999999999
Q ss_pred HHHHHH
Q 007214 409 VDVLDK 414 (612)
Q Consensus 409 ~~Al~~ 414 (612)
.+|+.-
T Consensus 431 ~~~~~~ 436 (456)
T 2c9o_A 431 EEISEL 436 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.95 E-value=4.1e-05 Score=72.89 Aligned_cols=27 Identities=26% Similarity=0.605 Sum_probs=23.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPF 232 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~ 232 (612)
.+.|.||+|+|||||++.+++.+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876544
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.91 E-value=4.2e-05 Score=74.99 Aligned_cols=77 Identities=17% Similarity=0.077 Sum_probs=50.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH--c-------CCCeeEEecccccch---------hhh---------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE--S-------GLPFVFASGAEFTDS---------EKS--------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e--~-------g~~~i~vs~s~~~~~---------~~~--------------- 246 (612)
|++...-++|+||||+|||+|++.+|.. . +...+++++...... .+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4556667999999999999999999985 2 446777776552100 000
Q ss_pred -hH---HHHHHHHHHHhhcCCeEEEEccchhhhc
Q 007214 247 -GA---ARINEMFSIARRNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 247 -~~---~~ir~lF~~A~~~~P~ILfIDEiD~l~~ 276 (612)
.. ..+..+.+......|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 00 1122334444556799999999998864
No 114
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.84 E-value=5.3e-05 Score=80.41 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=51.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh-----h-----------hhHHHHHHHHH-HHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----K-----------SGAARINEMFS-IAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~-----~-----------~~~~~ir~lF~-~A~ 259 (612)
|++....++|+||||+|||+||..+|.++ |.++++++...-.... + .....+....+ ..+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45666779999999999999999997654 6788888866532211 0 01112222222 233
Q ss_pred hcCCeEEEEccchhhhc
Q 007214 260 RNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~ 276 (612)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46789999999999974
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.83 E-value=3e-05 Score=74.84 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=33.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~ 239 (612)
|++...-++|+||||+|||+|++.+|...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4556667899999999999999999986677888888665
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.78 E-value=0.00011 Score=71.19 Aligned_cols=38 Identities=32% Similarity=0.585 Sum_probs=29.1
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEec
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASG 237 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~ 237 (612)
|++....++|+||||+|||+|++.++... +.++++++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34556678999999999999999998643 556666554
No 117
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.77 E-value=0.00018 Score=70.64 Aligned_cols=113 Identities=27% Similarity=0.279 Sum_probs=63.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHH--HH--cCCCeeEEecccccchh-------h-----------------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLA--KE--SGLPFVFASGAEFTDSE-------K----------------------- 245 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA--~e--~g~~~i~vs~s~~~~~~-------~----------------------- 245 (612)
|++...-+.|.||+|+|||||++.++ .. .+...+.++........ +
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34556679999999999999999998 32 34455555443211100 0
Q ss_pred -------------hhHHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 007214 246 -------------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (612)
Q Consensus 246 -------------~~~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (612)
........+........|.+|+|||.-+...... ........+..++..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-d~~~~~~~l~~l~~~l~~~------------- 171 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-EERKIREVLLKLNTILLEM------------- 171 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-SGGGHHHHHHHHHHHHHHH-------------
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-CHHHHHHHHHHHHHHHHHC-------------
Confidence 0011122333344457899999999988864211 1123344466666666321
Q ss_pred cEEEEEecCCCCCc
Q 007214 313 AVIFICATNRPDEL 326 (612)
Q Consensus 313 ~ViVIaaTN~p~~L 326 (612)
++.||.+|...+..
T Consensus 172 g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 172 GVTTILTTEAPDPQ 185 (251)
T ss_dssp CCEEEEEECCC---
T ss_pred CCeEEEEECCCCCC
Confidence 24566677665443
No 118
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.76 E-value=4.4e-05 Score=80.49 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=51.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh-----h------------hhHHHHHHHHHHHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----K------------SGAARINEMFSIAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~-----~------------~~~~~ir~lF~~A~ 259 (612)
|++...-++|+||||+|||+|+..+|..+ |.++++++...-.... + .....+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45666779999999999999999998654 6677888765432211 0 01111222222334
Q ss_pred hcCCeEEEEccchhhhc
Q 007214 260 RNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~ 276 (612)
...|.+|+||++.++..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999863
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.75 E-value=7.5e-05 Score=78.89 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=51.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh-----------------hhhHHHHHHHHHHHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----------------KSGAARINEMFSIAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~-----------------~~~~~~ir~lF~~A~ 259 (612)
|++...-++|+||||+|||+|+..+|..+ +.++++++........ ......+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45566678999999999999999998764 6778888876532210 001111222222333
Q ss_pred hcCCeEEEEccchhhhc
Q 007214 260 RNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~ 276 (612)
...|.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999988865
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.72 E-value=5.9e-05 Score=78.48 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=61.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEecccc-c-c-------hhhh---------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEF-T-D-------SEKS--------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~~-~-~-------~~~~--------------- 246 (612)
|++...-++|+||||+|||+++..+|... +.+.++++...- . + ..+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666779999999999999999999865 556788887652 1 1 0000
Q ss_pred -hH---HHHHHHHHHHhh-cCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcCC
Q 007214 247 -GA---ARINEMFSIARR-NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDGD 299 (612)
Q Consensus 247 -~~---~~ir~lF~~A~~-~~P~ILfIDEiD~l~~~~~~--~~-~~~~~~l~~LL~~ld~~ 299 (612)
.. ..+..+....+. ..+.+|+||.+..+...... ++ ..+.+.+.+++..|..+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~l 243 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRL 243 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHH
Confidence 01 112233344445 67899999999998643111 11 12233456666665543
No 121
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.68 E-value=0.0008 Score=75.09 Aligned_cols=170 Identities=10% Similarity=0.064 Sum_probs=89.7
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH-------cCCCeeEEecccc
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE-------SGLPFVFASGAEF 240 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e-------~g~~~i~vs~s~~ 240 (612)
.....++|.+.. +..+...+... ...++-++|+||+|+|||+||+.++.. ....++.++.+..
T Consensus 121 ~~~~~~vGR~~~---l~~L~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKL---VNAIQQKLSKL-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHH---HHHHHHHHTTS-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHH---HHHHHHHHhcc-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 344567888754 44455555432 123567999999999999999999642 1122444443332
Q ss_pred cch-----hh-----------------hhHHHHHHHHHH-Hh-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 241 TDS-----EK-----------------SGAARINEMFSI-AR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 241 ~~~-----~~-----------------~~~~~ir~lF~~-A~-~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
... .. .....+...+.. .. ...|++|+||+++... .+.
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~----------------~l~-- 252 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW----------------VLK-- 252 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH----------------HHH--
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH----------------HHH--
Confidence 110 00 000111222222 22 2268999999997421 122
Q ss_pred cCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEe-CCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHh
Q 007214 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYI-GLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFR 375 (612)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v-~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~ 375 (612)
.+. .+..||.||..+.... .. . +.. ..+.. +..+.++-.++|..++.............|++.
T Consensus 253 -~l~-----------~~~~ilvTsR~~~~~~-~~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~ 316 (591)
T 1z6t_A 253 -AFD-----------SQCQILLTTRDKSVTD-SV-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKE 316 (591)
T ss_dssp -TTC-----------SSCEEEEEESCGGGGT-TC-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHH
T ss_pred -Hhc-----------CCCeEEEECCCcHHHH-hc-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 111 1246666776543221 11 1 221 22222 467889999999887654221112346788989
Q ss_pred cCCCcH
Q 007214 376 TVGFSG 381 (612)
Q Consensus 376 t~G~sg 381 (612)
+.|..-
T Consensus 317 ~~G~PL 322 (591)
T 1z6t_A 317 CKGSPL 322 (591)
T ss_dssp HTTCHH
T ss_pred hCCCcH
Confidence 888643
No 122
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.64 E-value=8e-05 Score=78.74 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=52.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh-----h-----------hhHHHHHHHHHH-Hh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----K-----------SGAARINEMFSI-AR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~-----~-----------~~~~~ir~lF~~-A~ 259 (612)
|++....++|+||||+|||+||..+|.++ |.++++++...-.... + .....+..+.+. .+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45667789999999999999999998653 6788888875422211 0 011223333332 23
Q ss_pred hcCCeEEEEccchhhhc
Q 007214 260 RNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~ 276 (612)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46789999999999864
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=0.00016 Score=69.99 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=30.1
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCC---------CeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGL---------PFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~---------~~i~vs~s~ 239 (612)
|++...-+.|.||+|+|||+|++.++...-. ..++++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4556667899999999999999999985422 266666544
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.61 E-value=6.9e-05 Score=93.90 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=56.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchhhh-----------------hHHHHHHHHHHHh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS-----------------GAARINEMFSIAR 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~~~-----------------~~~~ir~lF~~A~ 259 (612)
|++....++|+||||||||+||.+++.+ .|.+.++++..+..+.... +....+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 4677788999999999999999999654 4889999998886554211 1122333334445
Q ss_pred hcCCeEEEEccchhhhc
Q 007214 260 RNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~ 276 (612)
..+|++|+||++..+..
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 67799999999999854
No 125
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.60 E-value=0.0013 Score=65.07 Aligned_cols=161 Identities=17% Similarity=0.248 Sum_probs=84.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc--------ccchh-h----------h--hHHHHHHHHHHHhh
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE--------FTDSE-K----------S--GAARINEMFSIARR 260 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~--------~~~~~-~----------~--~~~~ir~lF~~A~~ 260 (612)
-.|++.|+||+|||+++-++|..+ |..++.++... +.... . . ....+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 458999999999999998887654 77766555432 11100 0 0 011223322 2
Q ss_pred cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC-----------------
Q 007214 261 NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP----------------- 323 (612)
Q Consensus 261 ~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p----------------- 323 (612)
..|.+++|||+-..... ...+....+.+..++. .++-|++|+|.-
T Consensus 83 ~~pdlvIVDElG~~~~~-~~r~~~~~qDV~~~l~-----------------sgidVitT~Nlqh~esl~d~v~~itg~~v 144 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAP-GSRHTKRWQDIQELLA-----------------AGIDVYTTVNVQHLESLNDQVRGITGVQV 144 (228)
T ss_dssp HCCSEEEESCTTCBCCT-TCSSSBHHHHHHHHHH-----------------TTCEEEEEEEGGGBGGGHHHHHHHHSCCC
T ss_pred cCCCEEEEeCCCCCCcc-cchhHHHHHHHHHHHc-----------------CCCCEEEEccccccccHHHHHHHHcCCCc
Confidence 46899999998654211 1222223333322221 124567777721
Q ss_pred -CCccccccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccCCHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 007214 324 -DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (612)
Q Consensus 324 -~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~~A~~~A~ 396 (612)
+.++..+++ +-|....++.|..+ +++....++-..++..-..+.. =|+...|..|-.-|...++
T Consensus 145 ~e~vpd~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~---~f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 145 RETLPDWVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDA---FFTQTNLTALREMAMQTAA 209 (228)
T ss_dssp CSCBCHHHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_pred CCcCccHHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHh---hhchhhHHHHHHHHHHHHH
Confidence 234444554 55677778887665 3333334443333322233332 2677777666554544443
No 126
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.54 E-value=4.9e-05 Score=71.08 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=31.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
++-|+|+||||+||||++++++..++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4569999999999999999999999999887765443
No 127
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.53 E-value=0.0002 Score=75.11 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=59.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEecccccc-h--------hhh---------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTD-S--------EKS--------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~~~~-~--------~~~--------------- 246 (612)
|++...-++|+||||+|||+||..+|... +.+.++++...-.. . .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45556668999999999999999999863 45677887665211 0 000
Q ss_pred -hH---HHHHHHHHHHhh--cCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcCC
Q 007214 247 -GA---ARINEMFSIARR--NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDGD 299 (612)
Q Consensus 247 -~~---~~ir~lF~~A~~--~~P~ILfIDEiD~l~~~~~~--~~-~~~~~~l~~LL~~ld~~ 299 (612)
.. ..+..+....+. ..+.+|+||.+..+...... ++ ..+.+.+.+++..|...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~l 259 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKI 259 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 00 112223344444 67899999999998743111 11 12223455665555543
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00046 Score=67.49 Aligned_cols=40 Identities=40% Similarity=0.602 Sum_probs=30.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~ 239 (612)
|++...-++|+||||+|||+++..+|.. .+.++++++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4556667899999999999999888654 366777766543
No 129
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.50 E-value=0.0011 Score=79.77 Aligned_cols=170 Identities=9% Similarity=0.028 Sum_probs=95.0
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---C----CCeeEEecccc
Q 007214 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGAEF 240 (612)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g----~~~i~vs~s~~ 240 (612)
..-..++|.++. +.++.+.|... ...++-|.|+|++|+|||+||+.++... . ..++.++.+..
T Consensus 121 ~~~~~~vgR~~~---~~~l~~~l~~~-------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKL---VHAIQQKLWKL-------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHH---HHHHHHHHHTT-------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHH---HHHHHHHHhhc-------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 334567888754 44444444322 1235668899999999999999997652 1 12335554432
Q ss_pred cchh----------------------hhhHHHHHHHHHHHhh--cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 007214 241 TDSE----------------------KSGAARINEMFSIARR--NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (612)
Q Consensus 241 ~~~~----------------------~~~~~~ir~lF~~A~~--~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~l 296 (612)
.... ......+...+..... ..+.+|+||+++... .+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------~~ 251 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------VL 251 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------HH
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------HH
Confidence 1100 0011122333333323 337999999998431 12
Q ss_pred cCCcccCCcccccccccEEEEEecCCCCCccccccCCCceeEEEEeCC-CCHHHHHHHHHHHhcCCCCCccCCHHHHHHh
Q 007214 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL-PDAKQRVQIFDVHSAGKQLAEDVNFEELVFR 375 (612)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~-Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~ 375 (612)
+.+. .+..||.||..+..... .. .....+.++. .+.++-.++|..+.............+|++.
T Consensus 252 ~~~~-----------~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~ 316 (1249)
T 3sfz_A 252 KAFD-----------NQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKE 316 (1249)
T ss_dssp TTTC-----------SSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHH
T ss_pred Hhhc-----------CCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHH
Confidence 2221 12367777776543321 11 1234677775 8888999999877644332222336788989
Q ss_pred cCCCcH
Q 007214 376 TVGFSG 381 (612)
Q Consensus 376 t~G~sg 381 (612)
+.|..-
T Consensus 317 ~~glPL 322 (1249)
T 3sfz_A 317 CKGSPL 322 (1249)
T ss_dssp TTTCHH
T ss_pred hCCCHH
Confidence 888654
No 130
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.45 E-value=6.6e-05 Score=70.72 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
++.|+|+||||+|||++++.+|+.+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999988754
No 131
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.45 E-value=0.00022 Score=74.00 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=46.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc-----CCCeeEEecccccch-h----hh-----------hHHHH-HHHHHH---Hhh
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFTDS-E----KS-----------GAARI-NEMFSI---ARR 260 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~-----g~~~i~vs~s~~~~~-~----~~-----------~~~~i-r~lF~~---A~~ 260 (612)
-++++||||+|||+|+-.++.++ |..+++++..+-... . +. ....+ -.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 47899999999999988776543 667888887653221 0 10 01111 122222 355
Q ss_pred cCCeEEEEccchhhhcc
Q 007214 261 NAPAFVFVDEIDAIAGR 277 (612)
Q Consensus 261 ~~P~ILfIDEiD~l~~~ 277 (612)
.+|.+|+||-|.++.++
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 68999999999999753
No 132
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.42 E-value=0.00017 Score=78.58 Aligned_cols=54 Identities=15% Similarity=0.286 Sum_probs=39.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++..+.+|+++ .++.++.+..+..++... ...++|.||||||||+++.+++..+
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCccccC--CHHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46778899987 566777788877776654 1279999999999999999998765
No 133
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.00061 Score=66.71 Aligned_cols=40 Identities=43% Similarity=0.507 Sum_probs=30.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~~i~vs~s~ 239 (612)
|+++..-++++|+||+|||++|..+|.+ .+.++++++...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 4556667999999999999999887543 377887777543
No 134
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.40 E-value=0.00034 Score=69.94 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 178 e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
+.+..++.+...+.... .....|..++|.||||+||||+++.+++.++.+++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 10 EFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34445555544433221 123456789999999999999999999999877777877765
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.39 E-value=9.3e-05 Score=69.88 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=29.6
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
...|.-|+|.|+||+||||+++.++..+|.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456779999999999999999999999988765
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.37 E-value=0.00051 Score=73.70 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCeeEEecccccch---------hhh---------------
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS---------EKS--------------- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~~i~vs~s~~~~~---------~~~--------------- 246 (612)
|++...-++|+||||+|||+|++.+|-.. +...++++..+.... .+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666779999999999999999776433 234777776652110 000
Q ss_pred -h---HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCC--C-hhHHHHHHHHHHHhcC
Q 007214 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--D-PRRRATFEALIAQLDG 298 (612)
Q Consensus 247 -~---~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~--~-~~~~~~l~~LL~~ld~ 298 (612)
. ...+..+........|.+|+||++-.+......+ + .++.+.+.+++..|..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~ 312 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQR 312 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHH
Confidence 0 0112223334445679999999998886432111 1 2233344555555544
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.35 E-value=7.7e-05 Score=71.32 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=38.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEeccc--------ccchhhh-----hHHHHHHHHHHHhhcCCeEEEE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE--------FTDSEKS-----GAARINEMFSIARRNAPAFVFV 268 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~--------~~~~~~~-----~~~~ir~lF~~A~~~~P~ILfI 268 (612)
.-++++||||+|||+++..++.. .|.+++.+.... +....+. ......++++.+. ..+.+|+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 35789999999999999766654 365554443220 0000000 0011223333332 24679999
Q ss_pred ccchhh
Q 007214 269 DEIDAI 274 (612)
Q Consensus 269 DEiD~l 274 (612)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999976
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.0001 Score=70.81 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=29.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
..+.++|.||||+||||+++++|+.+|.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 456799999999999999999999999988754
No 139
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.32 E-value=0.00024 Score=73.47 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------------C----CCeeEEecccc--cch-------hhh-----
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------------G----LPFVFASGAEF--TDS-------EKS----- 246 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------------g----~~~i~vs~s~~--~~~-------~~~----- 246 (612)
|++...-++|+||||+|||++|..+|... | .++++++...- .+. .+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45566678999999999999999998752 3 56777876653 110 000
Q ss_pred ----------hHH----HHHHHHHHHhh-cCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcCC
Q 007214 247 ----------GAA----RINEMFSIARR-NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDGD 299 (612)
Q Consensus 247 ----------~~~----~ir~lF~~A~~-~~P~ILfIDEiD~l~~~~~~--~~-~~~~~~l~~LL~~ld~~ 299 (612)
... .+..+....+. ..+.+|+||.+..+...... ++ ..+.+.+.+++..|..+
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~l 244 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKL 244 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 000 12223334444 56899999999998642111 11 12233456666655543
No 140
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.32 E-value=0.00047 Score=72.54 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=31.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcC---------CCeeEEeccc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAE 239 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g---------~~~i~vs~s~ 239 (612)
|++...-+.|+||||+|||+|++.+|.... -..++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 556666789999999999999999998762 3457777654
No 141
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.30 E-value=0.00034 Score=86.76 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=54.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh-----hh--------hHHHHHHHHHHHh----
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----KS--------GAARINEMFSIAR---- 259 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~-----~~--------~~~~ir~lF~~A~---- 259 (612)
|+.+...++|+||||+|||+||..+|.++ +.++++++........ +. ....+..+++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 57778889999999999999999998754 5688888876654321 10 0012334444443
Q ss_pred hcCCeEEEEccchhhhc
Q 007214 260 RNAPAFVFVDEIDAIAG 276 (612)
Q Consensus 260 ~~~P~ILfIDEiD~l~~ 276 (612)
...|++|+||.++.+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999864
No 142
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.27 E-value=0.0016 Score=70.68 Aligned_cols=100 Identities=23% Similarity=0.344 Sum_probs=69.0
Q ss_pred HHHHHHHHhhcCCeEEEEccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec----CCCC
Q 007214 251 INEMFSIARRNAPAFVFVDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT----NRPD 324 (612)
Q Consensus 251 ir~lF~~A~~~~P~ILfIDEiD~l~~~~~--~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT----N~p~ 324 (612)
.+...+.|..+ .|+|+||||.++.+.. .++...+...+.||..|++.........+ ..++|++|||. +.|.
T Consensus 241 ~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~-d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 241 KQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV-KTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEE-ECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccccee-cCCcEEEEeccccccCChh
Confidence 44555555444 4899999999976532 23334455778999999986543221111 24568899887 2344
Q ss_pred CccccccCCCceeEEEEeCCCCHHHHHHHHH
Q 007214 325 ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFD 355 (612)
Q Consensus 325 ~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~ 355 (612)
.+-|.|+. ||+.+|.++.++.++..+|+.
T Consensus 318 dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 318 DLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 45577877 999999999999999999984
No 143
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.23 E-value=0.0012 Score=66.62 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
|++...-++|+||||+|||+|++.+|..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445567999999999999999999864
No 144
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.22 E-value=0.0039 Score=69.33 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=79.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH----HcCCCe---eEEeccccc-----c-------hhhh-------------hHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAK----ESGLPF---VFASGAEFT-----D-------SEKS-------------GAAR 250 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~----e~g~~~---i~vs~s~~~-----~-------~~~~-------------~~~~ 250 (612)
..+.|.|+|++|+|||+||+.+++ ...-.| +.++.+... . ..+. ....
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 356789999999999999999997 232222 233333311 0 0000 0111
Q ss_pred HHHHHHHHhhcC-CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCcccc
Q 007214 251 INEMFSIARRNA-PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLE 329 (612)
Q Consensus 251 ir~lF~~A~~~~-P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~a 329 (612)
+...+...-... +++|+||+++... +. .+... . +..||.||....... .
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~-----------~~---~~~~~------~---------gs~ilvTTR~~~v~~-~ 280 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEE-----------TI---RWAQE------L---------RLRCLVTTRDVEISN-A 280 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHH-----------HH---HHHHH------T---------TCEEEEEESBGGGGG-G
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCch-----------hh---ccccc------C---------CCEEEEEcCCHHHHH-H
Confidence 223333333343 7999999998541 11 11111 1 136777776533211 1
Q ss_pred ccCCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCCccC--CHHHHHHhcCCCcH
Q 007214 330 FVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV--NFEELVFRTVGFSG 381 (612)
Q Consensus 330 LlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~La~~t~G~sg 381 (612)
. +..+..+.++..+.++-.++|..+........+. ...+|++.+.|..-
T Consensus 281 ~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPL 331 (549)
T 2a5y_B 281 A---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPA 331 (549)
T ss_dssp C---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred c---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChH
Confidence 1 1134578999999999999999875433211111 14567777777543
No 145
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00023 Score=72.83 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 178 e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
+..+.+.+++..+... ......|..++|.||||+||||+++.++.+++..++++++..+.
T Consensus 11 ~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 11 QFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 3444555555433221 12234567799999999999999999999886567778764443
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.20 E-value=0.00016 Score=68.00 Aligned_cols=30 Identities=37% Similarity=0.600 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|+|.|+||+|||++++.+|..+|.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999987643
No 147
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.20 E-value=0.0002 Score=66.04 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
-|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876544
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.17 E-value=0.0002 Score=67.57 Aligned_cols=40 Identities=35% Similarity=0.447 Sum_probs=32.4
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
++.+.-+.|.||||+||||+++.+++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4456678999999999999999999987777777765443
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.0002 Score=67.24 Aligned_cols=33 Identities=39% Similarity=0.788 Sum_probs=28.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.++.|+|+|+||+|||++++.+|..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345799999999999999999999998877643
No 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.13 E-value=0.00027 Score=67.59 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=29.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
..|.-|+|.|+||+||||+++.++..+|.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456699999999999999999999999887654
No 151
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.13 E-value=0.00024 Score=65.91 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
-..++|.|+|||||||+++.+|..+|.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35799999999999999999999999998754
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.12 E-value=0.00085 Score=73.00 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=31.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~~i~vs~s 238 (612)
|+.+..-++|.|+||+|||+|+..+|.. .|.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 5666677999999999999999998764 36688877754
No 153
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.12 E-value=0.00022 Score=67.50 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=28.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH-cCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE-SGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e-~g~~~i~v 235 (612)
.+..|+|+|+||||||++++.+|.. +|.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3456999999999999999999998 68777643
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.11 E-value=0.00019 Score=67.11 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
.++|.||||+||||+++++|+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 155
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.07 E-value=0.00029 Score=65.36 Aligned_cols=30 Identities=37% Similarity=0.698 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
+..+.|.||||+||||+++.+|+.++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999887654
No 156
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.07 E-value=0.00024 Score=66.81 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
|.-|+|.|+||+||||+++.++..+|.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4568999999999999999999999887653
No 157
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.05 E-value=0.0013 Score=64.91 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=43.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc-------ccchhhhh-----HHHHHHHHHHHhh----cCCeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE-------FTDSEKSG-----AARINEMFSIARR----NAPAFV 266 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~-------~~~~~~~~-----~~~ir~lF~~A~~----~~P~IL 266 (612)
-++++||||+|||+++..++..+ |..++.++... +.+..+.. .....++++.++. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 46788999999999998887655 66666664222 11111100 0112355655554 347899
Q ss_pred EEccchhh
Q 007214 267 FVDEIDAI 274 (612)
Q Consensus 267 fIDEiD~l 274 (612)
+|||++.+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999876
No 158
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.03 E-value=0.00032 Score=65.85 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=28.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.++-|+|.|+||+||||+++.++..+|.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456799999999999999999999998766544
No 159
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.01 E-value=0.00036 Score=69.88 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s 238 (612)
-++|.||||+|||++|+++|++++.+++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999988776643
No 160
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.00 E-value=0.00032 Score=66.31 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=28.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.+.-|+|.|+||+||||+++.+|+.+|.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999999876644
No 161
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.99 E-value=0.00041 Score=66.37 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
++-|+|.||||+||||+++.+++.+|.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999999877654
No 162
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.98 E-value=0.0003 Score=64.63 Aligned_cols=29 Identities=41% Similarity=0.750 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
-|+|.||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888887654
No 163
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.98 E-value=0.0066 Score=67.69 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=51.7
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC--CccccccCCCceeEEEE
Q 007214 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRRLY 341 (612)
Q Consensus 264 ~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~~I~ 341 (612)
.+|+|||++.+.... .......+..+...-. .-+|.+|.+|.+|. .++..++. -|...|.
T Consensus 345 ivvVIDE~~~L~~~~---~~~~~~~L~~Iar~GR-------------a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~ 406 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---GKKVEELIARIAQKAR-------------AAGIHLILATQRPSVDVITGLIKA--NIPTRIA 406 (574)
T ss_dssp EEEEESCCTTHHHHT---CHHHHHHHHHHHHHCT-------------TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEE
T ss_pred EEEEEeCHHHHhhhh---hHHHHHHHHHHHHHHh-------------hCCeEEEEEecCcccccccHHHHh--hhccEEE
Confidence 689999999886421 1222333444443321 23589999999987 78887776 7888899
Q ss_pred eCCCCHHHHHHHHH
Q 007214 342 IGLPDAKQRVQIFD 355 (612)
Q Consensus 342 v~~Pd~~eR~~Il~ 355 (612)
+...+..+-..|+.
T Consensus 407 lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 407 FQVSSKIDSRTILD 420 (574)
T ss_dssp ECCSCHHHHHHHHS
T ss_pred EEcCCHHHHHHhcC
Confidence 99999888887874
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.97 E-value=0.00032 Score=65.18 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=24.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-HcCCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAK-ESGLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~-e~g~~~i 233 (612)
|.-|+|.||||+||||+++.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 45789999999999999999998 4554433
No 165
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.97 E-value=0.00033 Score=68.14 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
+..|+|.|+||+||||+++.+|..+|.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45689999999999999999999999876654
No 166
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.97 E-value=0.00041 Score=68.22 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=31.2
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
.+.|+-|+|.||||+||+|.|+.+|+.+|++.+ +..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 346778999999999999999999999987654 444443
No 167
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.96 E-value=0.00036 Score=67.80 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=28.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.+.-|+|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 346799999999999999999999999776543
No 168
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.96 E-value=0.00034 Score=68.39 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=28.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
..+.-|+|.||||+||||+++.+|..+|.+++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999998776643
No 169
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.96 E-value=0.0014 Score=65.81 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEF 240 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~ 240 (612)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456899999999999999999987 7888886665544
No 170
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.94 E-value=0.0004 Score=64.99 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
+.-|+|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999877
No 171
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.94 E-value=0.00041 Score=67.04 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|+|.||||+||||+++.+|.++|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998887654
No 172
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.93 E-value=0.00038 Score=65.92 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=28.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.+.-|+|.|+||+||||+++.+++.+|.+++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356799999999999999999999998665543
No 173
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.92 E-value=0.00036 Score=64.64 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
+.|+|.|+||+|||++++.+|..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988764
No 174
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.90 E-value=0.002 Score=69.83 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=31.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~~i~vs~s 238 (612)
|+.+..-++|.|+||+|||+|+..+|.. .|.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5666677899999999999999988764 36788887754
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.90 E-value=0.00046 Score=64.83 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
+..++|.||||+||||+++.+|+.+|.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3458999999999999999999999876653
No 176
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.89 E-value=0.00045 Score=66.64 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|+|.||||+||||+++.++.++|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887654
No 177
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.89 E-value=0.00048 Score=65.81 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=28.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.+.-|+|.|+||+||||+++.+++.+|.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 455689999999999999999999998766654
No 178
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.88 E-value=0.00025 Score=68.08 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-+.|.||+|+||||+++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 179
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.87 E-value=0.00047 Score=68.56 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=28.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|.-|+|.||||+||||+|+.+++.+|.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 466799999999999999999999998776644
No 180
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.87 E-value=0.0024 Score=66.07 Aligned_cols=39 Identities=31% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
|+.+..-++|.|+||+|||+|+..+|... |.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56666679999999999999999998654 5677777644
No 181
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.86 E-value=0.00039 Score=65.30 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
.-|+|.||||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 182
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.85 E-value=0.00052 Score=63.28 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|+|.|+||+||||+++.++..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887643
No 183
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.85 E-value=0.00037 Score=67.85 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=27.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
.+..|+|.||||+||||+++.+|..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999976543
No 184
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.85 E-value=0.0078 Score=66.41 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=49.8
Q ss_pred Ce-EEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC--CccccccCCCceeEE
Q 007214 263 PA-FVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRR 339 (612)
Q Consensus 263 P~-ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~~ 339 (612)
|. +|+|||+..+... ....+..++..+-.... .-++.+|.+|.+|. .++..++. -|...
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gR---------a~GI~LIlaTQrp~~dvl~~~i~~--n~~~R 358 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKKVEELIARLAQKAR---------AAGIHLVLATQRPSVDVITGLIKA--NIPTR 358 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHHHHHHHHHHHHHCG---------GGTEEEEEEESCCCTTTSCHHHHH--HCCEE
T ss_pred CcEEEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhh---------hCCcEEEEEecCCccccccHHHHh--hcCCe
Confidence 54 8999999887631 01122333333321111 12478889999987 57777776 78888
Q ss_pred EEeCCCCHHHHHHHHH
Q 007214 340 LYIGLPDAKQRVQIFD 355 (612)
Q Consensus 340 I~v~~Pd~~eR~~Il~ 355 (612)
|.+...+..+...|+.
T Consensus 359 I~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 359 IAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEECCSSHHHHHHHHS
T ss_pred EEEEcCCHHHHHHhcC
Confidence 9999999999888874
No 185
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.83 E-value=0.00094 Score=62.56 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=31.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
.+.-+.|.|++|+||||+++.++..+ |.|++.+++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 45568899999999999999999987 99998877443
No 186
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.82 E-value=0.00056 Score=67.23 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
+..|+|.|+||+||||+++.+|..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999776543
No 187
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.78 E-value=0.01 Score=64.33 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=49.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch---------------------hhhhHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS---------------------EKSGAARINEMFSIA 258 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~---------------------~~~~~~~ir~lF~~A 258 (612)
.|.-+++.||||+||||++..+|..+ |..+..+++.-+... .......++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998654 666766665543211 011223356677778
Q ss_pred hhcCCeEEEEccch
Q 007214 259 RRNAPAFVFVDEID 272 (612)
Q Consensus 259 ~~~~P~ILfIDEiD 272 (612)
+...+.+++||..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778899999773
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.77 E-value=0.00073 Score=62.89 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
+..++|.||||+||||+++.+++.+|.+++ ++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 456899999999999999999998876554 44444
No 189
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.72 E-value=0.00093 Score=63.97 Aligned_cols=36 Identities=42% Similarity=0.639 Sum_probs=28.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
.+.-+.|.||||+||||+++.+++.+|..+ +++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 456789999999999999999999987544 454444
No 190
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.68 E-value=0.0067 Score=58.51 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=66.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc---------ccchhh------------------hhHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE---------FTDSEK------------------SGAARINEMF 255 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~---------~~~~~~------------------~~~~~ir~lF 255 (612)
.|++|+++|.|||++|-++|-.+ |..+..+.... +..... ......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48899999999999999997544 77777774221 111110 0122344555
Q ss_pred HHHhh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCcccccc
Q 007214 256 SIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFV 331 (612)
Q Consensus 256 ~~A~~----~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLl 331 (612)
..+++ ....+|+|||+-....-+-- ....++..+.... ...-||.|+|.+ +++|+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~~ev~~~l~~Rp-----------~~~~vIlTGr~a---p~~l~ 168 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-------PLEEVISALNARP-----------GHQTVIITGRGC---HRDIL 168 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CHHHHHHHHHTSC-----------TTCEEEEECSSC---CHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-------CHHHHHHHHHhCc-----------CCCEEEEECCCC---cHHHH
Confidence 55544 44689999999664321111 1234555555432 235688888764 44555
Q ss_pred CCCceeEEEEe
Q 007214 332 RPGRIDRRLYI 342 (612)
Q Consensus 332 rpgRFd~~I~v 342 (612)
. .-|.+-++
T Consensus 169 e--~AD~VTem 177 (196)
T 1g5t_A 169 D--LADTVSEL 177 (196)
T ss_dssp H--HCSEEEEC
T ss_pred H--hCcceeee
Confidence 4 55555554
No 191
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.67 E-value=0.00081 Score=65.05 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.|+|.||||+||||+++.++..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877654
No 192
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.67 E-value=0.00096 Score=69.42 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=32.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
.++.++|+||+|+|||++++.+|++++.+++.++...+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 34579999999999999999999999988888765543
No 193
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.67 E-value=0.00093 Score=65.04 Aligned_cols=33 Identities=39% Similarity=0.700 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
++|.||||+||+|.|+.+|+.+|++.+ +..++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 788999999999999999999987755 444443
No 194
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.63 E-value=0.0014 Score=61.59 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs 236 (612)
-|.|.|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89888765
No 195
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.62 E-value=0.007 Score=62.46 Aligned_cols=71 Identities=25% Similarity=0.246 Sum_probs=45.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh---------------------hhhHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE---------------------KSGAARINEMFSI 257 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~---------------------~~~~~~ir~lF~~ 257 (612)
..++-+++.||+|+||||++..+|..+ +..+..+++.-+.... +.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456778999999999999999998754 5556555543322110 0001112234455
Q ss_pred HhhcCCeEEEEccch
Q 007214 258 ARRNAPAFVFVDEID 272 (612)
Q Consensus 258 A~~~~P~ILfIDEiD 272 (612)
+....|.+++||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 566778899999774
No 196
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.61 E-value=0.0043 Score=61.32 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s 238 (612)
.++++||+|+|||.++.+++...+.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998888777766544
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.59 E-value=0.0013 Score=62.89 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=27.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.+.-|.|.|+||+||||+++.+++.++.+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 356799999999999999999999876655443
No 198
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.58 E-value=0.0015 Score=68.98 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc----CCCeeEEec-cccc--------ch--hhhhHHHHHHHHHHHhhcCCeEEEEcc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES----GLPFVFASG-AEFT--------DS--EKSGAARINEMFSIARRNAPAFVFVDE 270 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~-s~~~--------~~--~~~~~~~ir~lF~~A~~~~P~ILfIDE 270 (612)
.+++.||+|+||||+.+++++.. +..++.+.- .++. .. .+.....+...+..|-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48899999999999999998764 233332221 1110 00 111112355577778788999999999
Q ss_pred ch
Q 007214 271 ID 272 (612)
Q Consensus 271 iD 272 (612)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 83
No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.54 E-value=0.0015 Score=62.60 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=25.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
.+.-|.|.|+||+||||+++.++..++.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3567999999999999999999998754433
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.53 E-value=0.0015 Score=63.36 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
.-+.|.||||+||||+++.+++.+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999977653
No 201
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.51 E-value=0.0016 Score=61.99 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-CCCeeEEe
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES-GLPFVFAS 236 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~-g~~~i~vs 236 (612)
+.-|.|.|+||+||||+++.+++.+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777654
No 202
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.50 E-value=0.0017 Score=62.21 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=28.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
.+.-+.|.||+|+||||+++++|+.+ |...+++++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 45678899999999999999999987 55444555433
No 203
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.49 E-value=0.0011 Score=63.37 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
-|.|.|++|+||||+++.+|+ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887766543
No 204
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.48 E-value=0.0018 Score=65.19 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=42.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC----CCeeEEecccc----------cch--hhhhHHHHHHHHHHHhhcCCeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEF----------TDS--EKSGAARINEMFSIARRNAPAFV 266 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g----~~~i~vs~s~~----------~~~--~~~~~~~ir~lF~~A~~~~P~IL 266 (612)
+..-++|.||+|+||||+++++++... ..++ +....+ ... .+.....++..+..+-...|.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 344588999999999999999987542 1222 111110 000 01011234666666666789999
Q ss_pred EEccch
Q 007214 267 FVDEID 272 (612)
Q Consensus 267 fIDEiD 272 (612)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.47 E-value=0.015 Score=62.89 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=46.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchh---------------------hhhHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE---------------------KSGAARINEMFSIA 258 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~---------------------~~~~~~ir~lF~~A 258 (612)
.|+-+++.||+|+||||++..+|..+ |..+..+++.-+.... .............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999998654 6666666644322110 00111234455666
Q ss_pred hhcCCeEEEEccch
Q 007214 259 RRNAPAFVFVDEID 272 (612)
Q Consensus 259 ~~~~P~ILfIDEiD 272 (612)
....+.+++||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 66678899999874
No 206
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.44 E-value=0.0033 Score=66.62 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=44.2
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcC----CCeeEEecc-cc--------cch--hhhhHHHHHHHHHHHhhcCCeE
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGA-EF--------TDS--EKSGAARINEMFSIARRNAPAF 265 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g----~~~i~vs~s-~~--------~~~--~~~~~~~ir~lF~~A~~~~P~I 265 (612)
.++...++|.||+|+||||+++++++... ..++.+... ++ ... .+.....++..+..+-...|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 34455689999999999999999988542 223222211 00 000 0001122455666666778999
Q ss_pred EEEccch
Q 007214 266 VFVDEID 272 (612)
Q Consensus 266 LfIDEiD 272 (612)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999983
No 207
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.44 E-value=0.0015 Score=61.89 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
-|.|.|+||+||||+++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987653
No 208
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.42 E-value=0.0019 Score=64.33 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCe--------eEEecccccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPF--------VFASGAEFTD 242 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~--------i~vs~s~~~~ 242 (612)
.+.-|.|.|+||+||||+|+.++..+|.++ ..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 456799999999999999999999999874 3566666654
No 209
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.42 E-value=0.006 Score=56.93 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.1
Q ss_pred cCceEEEEcCCCChHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFART 223 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAra 223 (612)
.+.-+.|.||+|+|||||+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445688999999999999994
No 210
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.42 E-value=0.0022 Score=60.50 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCeeEEe
Q 007214 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~~i~vs 236 (612)
|.|.|+||+||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99987654
No 211
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.42 E-value=0.00099 Score=62.44 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC---CCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESG---LPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g---~~~i~vs 236 (612)
-|+|.|+||+||||+++.+++.++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 488999999999999999999775 3455554
No 212
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.42 E-value=0.0016 Score=63.58 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
-|+|.||||+||||+++.++..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999876543
No 213
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0017 Score=61.56 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
+.-|.|.|++|+||||+++.+|+. |.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 566899999999999999999998 877664
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.38 E-value=0.0023 Score=63.25 Aligned_cols=30 Identities=30% Similarity=0.637 Sum_probs=26.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
|.-+.|.||||+||||+++.+++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 567999999999999999999999987654
No 215
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.38 E-value=0.0025 Score=60.62 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.+.|.|++|+|||++++.+|+.+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999887754
No 216
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.33 E-value=0.0075 Score=65.46 Aligned_cols=39 Identities=31% Similarity=0.244 Sum_probs=31.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
|+.+..-++|.|+||+|||++|-.+|... |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56666679999999999999999887644 6777777654
No 217
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.33 E-value=0.0027 Score=71.16 Aligned_cols=32 Identities=38% Similarity=0.570 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEe
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE---SGLPFVFAS 236 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs 236 (612)
+.+++.||||||||+++++++.. .|.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 46899999999999999999764 366666554
No 218
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.31 E-value=0.023 Score=62.84 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=58.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccch-----------------------------hhhh
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS-----------------------------EKSG 247 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~-----------------------------~~~~ 247 (612)
++.....++|.||||+|||+|++.++... |-+.+++...+-... ...+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45556668999999999999999998653 455555554321100 0012
Q ss_pred HHHHHHHHHHHhhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 007214 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (612)
Q Consensus 248 ~~~ir~lF~~A~~~~P~ILfIDEiD~l~~~~~~~~~~~~~~l~~LL~~ld 297 (612)
....+.+...+....|.+|+||=+..+-.. .........+..++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG--VSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CChHHHHHHHHHHHHHHH
Confidence 334566677777788999999966555321 111123344555555554
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.29 E-value=0.0024 Score=61.10 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
..+.|.||+|+||||+++.+|+ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999997 8877663
No 220
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.27 E-value=0.0084 Score=65.84 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=31.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s 238 (612)
|+.+..-++|.|+||+|||+|+..+|... |.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 56666679999999999999999998654 5678887754
No 221
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.25 E-value=0.0026 Score=63.13 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
|..+.|.||||+||||+++.+|+.+|.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999999999999999877643
No 222
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.0027 Score=60.46 Aligned_cols=28 Identities=25% Similarity=0.168 Sum_probs=24.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLP 231 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (612)
+.-|+|.|+||+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3568999999999999999999988764
No 223
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.22 E-value=0.0024 Score=66.66 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=47.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEeccc-c-----cchh-hh--hHHHHHHHHHHHhhcCCeEEEEccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE-F-----TDSE-KS--GAARINEMFSIARRNAPAFVFVDEI 271 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s~-~-----~~~~-~~--~~~~ir~lF~~A~~~~P~ILfIDEi 271 (612)
....++|.||+|+|||||++++++.... ..+.+.... + .... .. +..+.+..+..|-...|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 3456999999999999999999987632 244444322 1 1110 00 2345667777787888999999997
Q ss_pred h
Q 007214 272 D 272 (612)
Q Consensus 272 D 272 (612)
-
T Consensus 250 ~ 250 (330)
T 2pt7_A 250 R 250 (330)
T ss_dssp C
T ss_pred C
Confidence 5
No 224
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.20 E-value=0.0021 Score=61.82 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.-|.|+|++||||||+++.++..+|++++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3578999999999999999999889877643
No 225
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.18 E-value=0.0023 Score=64.22 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
...+.|.||+|+||||+++.+|+.+|.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45699999999999999999999999887653
No 226
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.18 E-value=0.0028 Score=65.53 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=33.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~~ 242 (612)
.|+-++|.||+|+|||+|+..+|+.++.++++++.-.+-.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~ 48 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYK 48 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccc
Confidence 4567899999999999999999999988887776655543
No 227
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.17 E-value=0.026 Score=62.32 Aligned_cols=39 Identities=38% Similarity=0.469 Sum_probs=27.7
Q ss_pred CccCceEEEEcCCCChHHHHHHH--HHHHc--CCCeeEEeccc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFART--LAKES--GLPFVFASGAE 239 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAra--lA~e~--g~~~i~vs~s~ 239 (612)
++....++|.||+|+|||||++. +++-. +-.-+++++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 45566799999999999999999 44432 44455555443
No 228
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.17 E-value=0.0021 Score=67.62 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999988865
No 229
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.13 E-value=0.0036 Score=60.22 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
+.+.++++.+... .+.+.-+.|.||+|+|||||++.+++.+.
T Consensus 6 ~~~~~~~~~~~~~-------~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPR-------QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTT-------CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4555666655432 23455688999999999999999998764
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.13 E-value=0.0024 Score=66.71 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=31.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
++-|+|.||+|+|||+|+..+|+.++.+++..+.-.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 4568999999999999999999999988877765543
No 231
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.07 E-value=0.0022 Score=65.20 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=24.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-CCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES-GLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~-g~~~i 233 (612)
|.-|+|.|+||+||||+++.++..+ +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4568999999999999999999864 55444
No 232
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.04 E-value=0.0024 Score=61.14 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=26.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc-CCCeeEE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFA 235 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~-g~~~i~v 235 (612)
.+.-+.|.||||+||||+++.+++.+ +++++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 34558899999999999999999877 5555443
No 233
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.99 E-value=0.0048 Score=57.98 Aligned_cols=35 Identities=37% Similarity=0.399 Sum_probs=27.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEec
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASG 237 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~ 237 (612)
.+.-++|.|+||+||||+++.+|..+ |.++..+++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45668899999999999999999876 445555543
No 234
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.98 E-value=0.0032 Score=60.73 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
|..+.|.|+||+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999999876643
No 235
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.97 E-value=0.0053 Score=65.97 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=28.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
.|.-|+|+|+||+||||+|+.++..++..++ +...+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchH
Confidence 4566899999999999999999998876554 44444
No 236
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.96 E-value=0.0035 Score=60.50 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
+.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 78766543
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.96 E-value=0.0036 Score=60.35 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
.+.-+.|.||+|+||||+++.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 238
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.96 E-value=0.012 Score=56.17 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
..+.-+.|.||+|+||||+++.+++.+ +.+++..+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 345568899999999999999999865 66666654443
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.94 E-value=0.0038 Score=60.15 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=30.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEF 240 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~~ 240 (612)
.+.-++|.|+||+||||+++.+++.+ |.+++.+++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45568899999999999999999865 567777775443
No 240
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.92 E-value=0.0049 Score=60.51 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=27.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
.+..+.|.|++|+|||++++.+|+.+|++++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 45568999999999999999999999987654
No 241
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.85 E-value=0.0053 Score=61.20 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
..-+.|.||+|+||||+++.+|+.+|.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 346889999999999999999999998765
No 242
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.84 E-value=0.0047 Score=59.17 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
..++-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999874
No 243
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.83 E-value=0.031 Score=58.41 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=30.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s 238 (612)
|+.+..-++|.|+||+|||+|+..+|.. .|.++.+++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4556667999999999999999999765 36777777643
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.82 E-value=0.033 Score=57.06 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=29.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEeccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~ 239 (612)
.+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46678999999999999999998643 66676666544
No 245
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.82 E-value=0.0038 Score=63.39 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
|.-|.|.|+||+||||+++.++ ++|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568999999999999999999 678766543
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.78 E-value=0.0058 Score=57.44 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
.+-+.|.||+|+|||||++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998753
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.70 E-value=0.0056 Score=58.11 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.+.-+.|.||+|+||||+++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45568999999999999999999875
No 248
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.68 E-value=0.0054 Score=63.53 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEeccccc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~~ 241 (612)
+-++|.||+|+|||+|+..+|..++..+++.+.-.+-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccce
Confidence 4578999999999999999999988777666654433
No 249
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.64 E-value=0.0059 Score=63.89 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s 238 (612)
+-|+|.||+|+|||++|+.+|..++..++..+.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4689999999999999999999998766655543
No 250
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.59 E-value=0.0047 Score=59.86 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=26.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
.++++|.||+|+|||+||..+++..+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 57899999999999999999998765 665544
No 251
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.52 E-value=0.054 Score=58.52 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=46.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecccccchhh---------------------hhHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSEK---------------------SGAARINEMFS 256 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s~~~~~~~---------------------~~~~~ir~lF~ 256 (612)
..|+.+++.|++|+||||++-.+|..+ |..+..+++.-+..... .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457889999999999999999887543 77788777765332110 00122355666
Q ss_pred HHhhcCCeEEEEccc
Q 007214 257 IARRNAPAFVFVDEI 271 (612)
Q Consensus 257 ~A~~~~P~ILfIDEi 271 (612)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666445578898764
No 252
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.52 E-value=0.0082 Score=57.89 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
-|.|.||+|||||++++.+|+.+|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999883
No 253
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.48 E-value=0.0074 Score=56.76 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g 229 (612)
-+.|.||+|+||||+++.+++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998553
No 254
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.42 E-value=0.0071 Score=57.90 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=25.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC--CCee
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG--LPFV 233 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g--~~~i 233 (612)
.+.-+.|.||+|+||||+++.+++.++ +.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 345688999999999999999999877 4444
No 255
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.37 E-value=0.04 Score=60.66 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=28.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEec
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASG 237 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~ 237 (612)
..++.|++.|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 356789999999999999999998654 666666665
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.34 E-value=0.055 Score=56.04 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=29.5
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
...++-+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3467779999999999999999998754 5566666543
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.33 E-value=0.01 Score=56.24 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=25.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s 238 (612)
+.-+.|.||+|+||||+++.+++.. |-+.++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~--~~~~~~~~ 39 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL--AEIKISIS 39 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS--SSEEECCC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC--CCeEEece
Confidence 3458899999999999999999875 34444443
No 258
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.32 E-value=0.056 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
+.+++.+|+|+|||+++-..+.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999988777654
No 259
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.26 E-value=0.0089 Score=63.91 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEEecccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~~ 240 (612)
++-++|.||+|+|||+|+..+|..++..+++++.-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~Qv 38 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV 38 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccce
Confidence 3467899999999999999999999877766554433
No 260
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.21 E-value=0.037 Score=56.98 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++..-+.|.||+|+|||||++.+++..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345568999999999999999998744
No 261
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.21 E-value=0.017 Score=58.61 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=30.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s 238 (612)
|++...-++|.||||+|||+|++.+|... |.++++++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 45556678999999999999999998754 5566666543
No 262
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.19 E-value=0.012 Score=65.07 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=45.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC--CCeeEEeccc-ccch------------hhhhHHHHHHHHHHHhhcCCeEEEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAE-FTDS------------EKSGAARINEMFSIARRNAPAFVFV 268 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g--~~~i~vs~s~-~~~~------------~~~~~~~ir~lF~~A~~~~P~ILfI 268 (612)
..++++.||+|+||||+++++++... ...+.+.... +.-. ...+...+..+...+-...|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45699999999999999999998763 2345554332 1100 0001112455566666778999999
Q ss_pred ccch
Q 007214 269 DEID 272 (612)
Q Consensus 269 DEiD 272 (612)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9973
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.19 E-value=0.01 Score=55.94 Aligned_cols=24 Identities=42% Similarity=0.740 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+-+.|.||+|+||||+++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.18 E-value=0.014 Score=55.81 Aligned_cols=25 Identities=40% Similarity=0.689 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
|.|+|+||+|+|||+|++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999988764
No 265
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.05 E-value=0.06 Score=57.89 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=39.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCC---CeeEEecc-ccc-c-----hhh-hhHHHHHHHHHHHhhcCCeEEEEccc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGL---PFVFASGA-EFT-D-----SEK-SGAARINEMFSIARRNAPAFVFVDEI 271 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~---~~i~vs~s-~~~-~-----~~~-~~~~~ir~lF~~A~~~~P~ILfIDEi 271 (612)
-+++.||+|+||||+++++++.... .++.+.-. ++. . ... ...-........+-...|.++++.|+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 4789999999999999999987642 33333211 110 0 000 00011334444555567999999985
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.04 E-value=0.068 Score=54.69 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=28.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEeccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~ 239 (612)
+.-+++.|++|+||||++..+|..+ |..+..+++.-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6678899999999999999998655 66676666543
No 267
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.03 E-value=0.067 Score=58.63 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=23.7
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...+.-+.|.||+|+||||+++.||+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3456668899999999999999999865
No 268
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.95 E-value=0.026 Score=54.28 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=42.4
Q ss_pred CceEEEEcCCCChHH-HHHHHHHH--HcCCCeeEEecc---cccch----hhhh-----HHHHHHHHHHHhhcCCeEEEE
Q 007214 204 VRGVLLSGPPGTGKT-LFARTLAK--ESGLPFVFASGA---EFTDS----EKSG-----AARINEMFSIARRNAPAFVFV 268 (612)
Q Consensus 204 p~gvLL~GPPGTGKT-~LAralA~--e~g~~~i~vs~s---~~~~~----~~~~-----~~~ir~lF~~A~~~~P~ILfI 268 (612)
.+-.++|||.|+||| .|.+++.+ +.+..++.+... .+... .+.. .....++++..+ ...+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEE
Confidence 345788999999999 88888855 457788777644 22111 1100 011223333332 3469999
Q ss_pred ccchhh
Q 007214 269 DEIDAI 274 (612)
Q Consensus 269 DEiD~l 274 (612)
||++-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999977
No 269
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.94 E-value=0.09 Score=54.95 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=25.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEe
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs 236 (612)
+.-|.|.|+||+|||+++.+++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4568999999999999999998764 55544443
No 270
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.91 E-value=0.07 Score=50.35 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=15.0
Q ss_pred ceEEEEcCCCChHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFA 221 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LA 221 (612)
+.+++.+|+|+|||..+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 56999999999999863
No 271
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.90 E-value=0.015 Score=57.52 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
-+-|.||||+||||+|+.++..+|++.++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999999999887643
No 272
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.87 E-value=0.015 Score=55.27 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeEEeccc
Q 007214 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~~i~vs~s~ 239 (612)
+|++|++|+|||++|..+|.. +.|.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 273
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=94.86 E-value=0.031 Score=47.90 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=43.7
Q ss_pred hcCCCcChHHHH-HhhccCCccEEEEEcCeeEEEEEEecCce----eEEEEeCCCChhHHHHHHh
Q 007214 33 RYRPKLPYTYFL-EKLDSSEVAAVVFTEDLKRLYVTMKEGFP----LEYVVDIPLDPYLFETIAS 92 (612)
Q Consensus 33 ~~~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~ 92 (612)
+..++|||++|. ++|++|.|++|++.+. ..+.+.++++.. ..|.+.++.-+.|.+.|.+
T Consensus 13 ~~~~eIs~~eF~~~~L~kG~V~kI~V~nk-~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le~ 76 (99)
T 2lna_A 13 RSGREITWKDFVNNYLSKGVVDRLEVVNK-RFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLET 76 (99)
T ss_dssp SSSEECCHHHHHHHTGGGTCEEEEEEETT-TEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHhhCCCceEEEEEcC-CEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHHH
Confidence 345689999999 7999999999988744 467777776641 2367788876667666654
No 274
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.86 E-value=0.02 Score=64.71 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=32.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~ 240 (612)
.+.-|+|.|+||+||||++++++..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 35568999999999999999999998 999998875443
No 275
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.83 E-value=0.014 Score=55.88 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++-+.|.||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999865
No 276
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.77 E-value=0.093 Score=64.38 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.0
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
+++..-+.|+||+|+|||||++.+.+++.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 33445589999999999999999998763
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.76 E-value=0.021 Score=52.96 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+...-+.|.||.|+|||||+|.+++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344458899999999999999999986
No 278
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.72 E-value=0.015 Score=57.38 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (612)
.+.-+-|.||+|+||||+++.+++.+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34457899999999999999999988754
No 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.72 E-value=0.045 Score=65.04 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
.+-+.|+||+|.|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 467899999999999999999863
No 280
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.64 E-value=0.11 Score=58.39 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=23.2
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+++..-+.|.||+|+|||||++.+++..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3445568999999999999999998754
No 281
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.64 E-value=0.088 Score=58.83 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++..-+.|.||+|+|||||++.+++..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 344558899999999999999998754
No 282
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.62 E-value=0.11 Score=61.35 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
....-+.|.||.|+||||+.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3445689999999999999999874
No 283
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.62 E-value=0.011 Score=57.56 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=16.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHH-HHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLA-KES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA-~e~ 228 (612)
...-+.|.||+|+||||+++.++ +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34558899999999999999999 765
No 284
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.62 E-value=0.021 Score=55.13 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
.++-+.|.||+|+|||+|++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 285
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.60 E-value=0.026 Score=59.36 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=45.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CeeEEecc-ccc-----ch---h-----hh---hHHHHHHHHHHHhhcC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGA-EFT-----DS---E-----KS---GAARINEMFSIARRNA 262 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~--~~i~vs~s-~~~-----~~---~-----~~---~~~~ir~lF~~A~~~~ 262 (612)
+....++|.||+|+|||||++++++.... ..+.+... ++. .. . .. ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 34457999999999999999999986632 23444321 110 00 0 00 1123566777777778
Q ss_pred CeEEEEccch
Q 007214 263 PAFVFVDEID 272 (612)
Q Consensus 263 P~ILfIDEiD 272 (612)
|..++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 9999999974
No 286
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.59 E-value=0.05 Score=61.64 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGA 238 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s 238 (612)
-.|++||||||||+++-.+..+ .+.+++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 4789999999999765544332 25566555433
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.58 E-value=0.082 Score=53.95 Aligned_cols=70 Identities=23% Similarity=0.165 Sum_probs=44.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecccccchhh---------------------hhHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK---------------------SGAARINEMFSIA 258 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s~~~~~~~---------------------~~~~~ir~lF~~A 258 (612)
.++.+.+.|++|+||||++..+|..+ +..+..+++.-...... ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678888999999999999998754 55555555432111000 0011234556666
Q ss_pred hhcCCeEEEEccch
Q 007214 259 RRNAPAFVFVDEID 272 (612)
Q Consensus 259 ~~~~P~ILfIDEiD 272 (612)
....+.+|+||+--
T Consensus 177 ~~~~~D~viiDtpp 190 (295)
T 1ls1_A 177 RLEARDLILVDTAG 190 (295)
T ss_dssp HHHTCCEEEEECCC
T ss_pred HhCCCCEEEEeCCC
Confidence 55567899999863
No 288
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.56 E-value=0.019 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||+|+|||||++.+++..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34458899999999999999999976
No 289
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.53 E-value=0.022 Score=54.58 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
...-+.|.||+|+|||||++++++...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345588999999999999999999763
No 290
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.45 E-value=0.035 Score=57.04 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.0
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999865
No 291
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.41 E-value=0.02 Score=56.26 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~ 234 (612)
.-|.+.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 458899999999999999999999999864
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.37 E-value=0.05 Score=55.50 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
..|.-|.|.||+|+||||+++.+++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4566788999999999999999998764
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.36 E-value=0.025 Score=58.31 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=25.1
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.+++...+.|+||+|+|||||++.+++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45556679999999999999999999876
No 294
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.35 E-value=0.15 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=23.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456778999999999999999999764
No 295
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.35 E-value=0.025 Score=62.60 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (612)
.+.-|+|+|.||+||||+++.+|+.++.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35568999999999999999999988543
No 296
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.32 E-value=0.018 Score=58.85 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC---CCeeEEecccccc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTD 242 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g---~~~i~vs~s~~~~ 242 (612)
+.-|.|.||+|+||||+++.++..++ ..+..+++.++..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 34588999999999999999998765 4556667666653
No 297
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.28 E-value=0.011 Score=56.33 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g 229 (612)
-|.|.||+|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998874
No 298
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.15 E-value=0.044 Score=57.73 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.2
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4456678999999999999999999865
No 299
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.14 E-value=0.03 Score=54.94 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC--CCeeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESG--LPFVF 234 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g--~~~i~ 234 (612)
+.-|.|.||||+||||+++.+++.++ .+++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 44578899999999999999999876 45443
No 300
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.05 E-value=0.11 Score=48.86 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFAR 222 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (612)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 301
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.04 E-value=0.032 Score=54.56 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
+...-+.|.||+|+|||||++++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445688999999999999999998764
No 302
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.01 E-value=0.11 Score=49.93 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=31.1
Q ss_pred CCcccccceecC-cccHHHHHHHHHHhCCchhhhhcCC---ccCceEEEEcCCCChHHHHH
Q 007214 165 DTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGV---QFVRGVLLSGPPGTGKTLFA 221 (612)
Q Consensus 165 ~~~~~f~dvvG~-~e~k~~L~elv~~l~~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LA 221 (612)
.+..+|+|..+. +++.+.+... -+..|..++...+ ...+.+++.+|+|+|||..+
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 456778885333 3333333321 1334444443221 12467999999999999754
No 303
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.99 E-value=0.12 Score=57.79 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++..-+.|.||+|+|||||++.+++..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344568999999999999999998754
No 304
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.97 E-value=0.2 Score=53.86 Aligned_cols=36 Identities=28% Similarity=0.181 Sum_probs=28.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
.+..+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 56778899999999999999998754 5566666553
No 305
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.88 E-value=0.16 Score=49.06 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=30.8
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhcC---CccCceEEEEcCCCChHHHHH
Q 007214 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG---VQFVRGVLLSGPPGTGKTLFA 221 (612)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g---~~~p~gvLL~GPPGTGKT~LA 221 (612)
..+|+++-..+.+.+.|.+. -...|..++... +...+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 45688875555554444331 123343343321 112367999999999999853
No 306
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.79 E-value=0.35 Score=57.05 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (612)
..-++|.||.|+||||+.|.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999953
No 307
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.74 E-value=0.031 Score=57.34 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
.+.-+.|.||+|+|||||++.+++.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 308
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.69 E-value=0.066 Score=59.62 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=29.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC----CCeeEEecccc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEF 240 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g----~~~i~vs~s~~ 240 (612)
.+..+.|.|++|+||||+++++|+.++ ..+..+++..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 345688999999999999999999874 34555665554
No 309
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.66 E-value=0.041 Score=61.57 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=30.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC----CCeeEEecc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGA 238 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g----~~~i~vs~s 238 (612)
.+.-|+|.|+||+||||+|+++++.++ .+++.++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 345688999999999999999999875 788877643
No 310
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.64 E-value=0.043 Score=51.97 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=24.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
.+|+||.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 579999999999999999999874 54443
No 311
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.61 E-value=0.041 Score=53.59 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCeeEEe
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~~i~vs 236 (612)
..|-|+|..|||||++++.++. +|.|++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4688999999999999999997 898877544
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.44 E-value=0.046 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.+.||+|+|||++++.+++.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999998764
No 313
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.42 E-value=0.047 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
|+-|.+.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999983
No 314
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.40 E-value=0.072 Score=55.23 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
..|.-+.|.||+|+||||+++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999999999998765
No 315
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.40 E-value=0.19 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
+..|+|.|++|+|||+|+.++.+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 346999999999999999999864
No 316
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.34 E-value=0.12 Score=50.41 Aligned_cols=67 Identities=9% Similarity=0.043 Sum_probs=38.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH---cCCCeeEEecccccchhhh--hHHH------------HHHHHHHHhhcCCeEEEE
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS--GAAR------------INEMFSIARRNAPAFVFV 268 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e---~g~~~i~vs~s~~~~~~~~--~~~~------------ir~lF~~A~~~~P~ILfI 268 (612)
-.+++||.|+|||+.+-.++.. .|..++.+...-- ..++. ..++ ..++++.+. ....+|+|
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d-~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvViI 107 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID-NRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVIAI 107 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-CcchHHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEEEE
Confidence 3568899999999988877654 4777776653221 11111 0111 123333332 23579999
Q ss_pred ccchhh
Q 007214 269 DEIDAI 274 (612)
Q Consensus 269 DEiD~l 274 (612)
||+.-+
T Consensus 108 DEaQF~ 113 (214)
T 2j9r_A 108 DEVQFF 113 (214)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999976
No 317
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.33 E-value=0.26 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...|++.|++|+|||+|+.++.+..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4569999999999999999998643
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.25 E-value=0.048 Score=56.22 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=23.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+.+.-+.|.||+|+|||||++.+++.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345568899999999999999999865
No 319
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.25 E-value=0.022 Score=56.82 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.+.-|.|.|++|+||||+++.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999999987
No 320
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.22 E-value=0.033 Score=60.61 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=25.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCe
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~~ 232 (612)
.+.-|+|.|.||+|||++++.+|+.++.++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 355799999999999999999999875443
No 321
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.11 E-value=0.18 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||||+|||||.+++++.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34458899999999999999998754
No 322
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.10 E-value=0.061 Score=58.54 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..++|+||||+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358999999999999999887643
No 323
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.03 E-value=0.48 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...-+.|.||.|+||||+.|.++.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999863
No 324
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.02 E-value=0.057 Score=55.51 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=22.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.+.-+.|.||+|+||||+++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999865
No 325
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.99 E-value=0.099 Score=57.58 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=24.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGL 230 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (612)
+..|.|.|++||||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999874
No 326
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.94 E-value=0.26 Score=48.04 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhcC---CccCceEEEEcCCCChHHHHHH
Q 007214 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG---VQFVRGVLLSGPPGTGKTLFAR 222 (612)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g---~~~p~gvLL~GPPGTGKT~LAr 222 (612)
.+-.+|+++-..+.+.+.+.+. -+..|..++..- +...+.+++.+|+|+|||+..-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 4456788864444443333321 133343333321 1123679999999999998643
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.80 E-value=0.065 Score=50.34 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=25.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEe
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs 236 (612)
.+-+.+.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468899999999999999998764 55554444
No 328
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.74 E-value=0.086 Score=56.89 Aligned_cols=36 Identities=33% Similarity=0.356 Sum_probs=29.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
.|+.++++|+||+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45779999999999999999998765 5666666654
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.65 E-value=0.073 Score=49.39 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g 229 (612)
-.+|+||.|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999988664
No 330
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.63 E-value=0.045 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34458899999999999999999754
No 331
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.63 E-value=0.041 Score=53.87 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999754
No 332
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.60 E-value=0.046 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
..-+.|.||.|+|||||++.+++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999974
No 333
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.58 E-value=0.046 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||+|+|||||++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999998753
No 334
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.53 E-value=0.054 Score=53.69 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.7
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++. .-+.|.||.|+|||||.+.+++-.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 568899999999999999999753
No 335
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.48 E-value=0.21 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
.-|.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 336
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.39 E-value=0.28 Score=50.85 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.+.|+||+|||+++.+++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998654
No 337
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.17 Score=46.80 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=22.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
....|++.|++|+|||+|+.++++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998753
No 338
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.29 E-value=0.12 Score=58.38 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
..++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999988777654
No 339
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.22 E-value=0.074 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
.-+.|.||+|+|||+|++.+++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999975
No 340
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.22 E-value=0.13 Score=49.95 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEe
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs 236 (612)
.-|.|.||+|+||||+++.++..+ |.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 457788999999999999998876 45665443
No 341
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.21 E-value=0.28 Score=60.16 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+..-+-|+||+|+|||||++.+.+-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34458899999999999999998744
No 342
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.15 E-value=0.055 Score=54.26 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999754
No 343
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.15 E-value=0.072 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-+.|.||+|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 344
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.12 E-value=0.2 Score=52.28 Aligned_cols=25 Identities=44% Similarity=0.619 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.|+||+|||||..++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998753
No 345
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.07 E-value=0.056 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999753
No 346
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.01 E-value=0.056 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||.|+|||||.+.+++-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999754
No 347
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.43 Score=44.19 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
--|+|.|++|+|||+|++++.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 348
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.97 E-value=0.067 Score=53.19 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...-+.|.||.|+|||||++.+++-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445889999999999999999974
No 349
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.92 E-value=0.072 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...-+.|.||.|+|||||++.+++-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445889999999999999999974
No 350
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.89 E-value=0.059 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||.+.+++..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568899999999999999999754
No 351
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.87 E-value=0.055 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999998754
No 352
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.85 E-value=0.063 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44568899999999999999999754
No 353
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.82 E-value=0.061 Score=53.46 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999998754
No 354
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.81 E-value=0.31 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
+..|+|.|.||+|||+|+.++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 456999999999999999999753
No 355
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.79 E-value=0.61 Score=53.22 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=17.2
Q ss_pred cCceEEEEcCCCChHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFAR 222 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAr 222 (612)
..+.+++.||+|+|||+.+-
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35789999999999998773
No 356
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.79 E-value=0.1 Score=54.58 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGL 230 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (612)
..-+.|.||+|+|||||++.+++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456899999999999999999997654
No 357
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.79 E-value=0.13 Score=54.11 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=16.1
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTL 224 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAral 224 (612)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 57999999999999844433
No 358
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.77 E-value=0.062 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||.+.+++-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458899999999999999999754
No 359
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.77 E-value=0.085 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.+.|.||+|+|||||.+.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 360
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.76 E-value=0.12 Score=50.93 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc-------CCCeeEEe
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES-------GLPFVFAS 236 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~-------g~~~i~vs 236 (612)
.-|.|.||+|+||||+++.++..+ |.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 447888999999999999999876 66665443
No 361
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.75 E-value=0.099 Score=46.62 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
.+++.|++|+|||+|++++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 362
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.75 E-value=0.066 Score=53.85 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34458899999999999999999754
No 363
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.70 E-value=0.11 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...|+|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998754
No 364
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.68 E-value=0.068 Score=53.93 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44458899999999999999999754
No 365
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.66 E-value=0.066 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+.+.|.||+|+|||||++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999875
No 366
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.65 E-value=0.1 Score=51.66 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLP 231 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~ 231 (612)
+.-|.+.|++|+||||+++.++..+ |.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4568899999999999999998765 555
No 367
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.64 E-value=0.065 Score=54.29 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34458899999999999999999754
No 368
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.61 E-value=0.32 Score=59.47 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.9
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
++..-+-|.||+|+|||||++.+++..
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558999999999999999998765
No 369
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.60 E-value=0.1 Score=46.86 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 370
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.60 E-value=0.78 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=18.2
Q ss_pred ccCceEEEEcCCCChHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFART 223 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAra 223 (612)
...+.+++.||+|+|||+.+-.
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHH
Confidence 3457899999999999998743
No 371
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.55 E-value=0.067 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||.+.+++-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999754
No 372
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.53 E-value=0.079 Score=55.79 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|||||||.|.+|+-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3447899999999999999999854
No 373
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.49 E-value=0.073 Score=53.27 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999754
No 374
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.44 E-value=0.074 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999754
No 375
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.37 E-value=0.12 Score=57.58 Aligned_cols=35 Identities=31% Similarity=0.357 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCeeEEecc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~~i~vs~s 238 (612)
+.-|+|.|+||+||||+++.+++.+ |.++..+++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 4568999999999999999999875 4566666643
No 376
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.33 E-value=0.068 Score=53.78 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++++++-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34458899999999999999999754
No 377
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.30 E-value=0.073 Score=53.13 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||.+.+++-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999754
No 378
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.26 E-value=0.11 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|+||+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 379
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.25 E-value=0.075 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999754
No 380
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.24 E-value=0.11 Score=58.63 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=19.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
+-++++||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46999999999999998877543
No 381
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.23 E-value=0.11 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.|++.|++|+|||+|+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 382
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.20 E-value=1.2 Score=43.97 Aligned_cols=67 Identities=15% Similarity=0.038 Sum_probs=37.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH---HcCCCeeEEecccccchhh-hhHH------------HHHHHHHHHhhcCCeEEEE
Q 007214 205 RGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTDSEK-SGAA------------RINEMFSIARRNAPAFVFV 268 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~---e~g~~~i~vs~s~~~~~~~-~~~~------------~ir~lF~~A~~~~P~ILfI 268 (612)
.-.+++||.|+|||+.+-..+. ..|..++.+...- ...++ ...+ ...++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~-D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK-DTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT-CCCC-----------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC-CccchHHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 4467889999999976665544 3466666554221 11111 0000 112344444 33569999
Q ss_pred ccchhh
Q 007214 269 DEIDAI 274 (612)
Q Consensus 269 DEiD~l 274 (612)
||+.-+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999876
No 383
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.20 E-value=0.092 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999854
No 384
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.20 E-value=0.088 Score=55.34 Aligned_cols=25 Identities=40% Similarity=0.440 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|+|||||.+.+|+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999754
No 385
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.20 E-value=0.093 Score=55.25 Aligned_cols=25 Identities=40% Similarity=0.297 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3457899999999999999999754
No 386
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.20 E-value=0.19 Score=49.02 Aligned_cols=30 Identities=27% Similarity=0.182 Sum_probs=25.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
++-|.+.|++|+||||+++.++..++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 345888999999999999999999887543
No 387
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.03 E-value=0.083 Score=55.38 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3457899999999999999999754
No 388
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.03 E-value=0.097 Score=55.51 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|||||||.|.+|+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3457899999999999999999854
No 389
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.02 E-value=0.08 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
....|++.|++|+|||+|+.++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999753
No 390
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.02 E-value=0.098 Score=55.34 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3457899999999999999999754
No 391
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.98 E-value=0.39 Score=55.62 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...+++.||+|+|||+++..++.+
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999987777544
No 392
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.98 E-value=0.12 Score=46.22 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-.|++.|++|+|||+|+.++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 393
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.93 E-value=0.13 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 394
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.88 E-value=0.12 Score=46.98 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
-+.|.|+||+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999863
No 395
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.87 E-value=0.13 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-.|++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998753
No 396
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.86 E-value=0.098 Score=55.30 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3458899999999999999999754
No 397
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.76 E-value=0.13 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 398
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.75 E-value=0.1 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~ 226 (612)
-|+|.|++|+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 399
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.73 E-value=0.13 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 400
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.70 E-value=0.13 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999865
No 401
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.64 E-value=0.13 Score=46.52 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|+||+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45999999999999999999753
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.63 E-value=0.26 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-++|.|+.|+||||+++.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999754
No 403
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.62 E-value=0.21 Score=58.01 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
-.++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999988777654
No 404
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.55 E-value=0.095 Score=52.67 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||.|+|||||.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 405
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.53 E-value=0.14 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 406
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.51 E-value=0.18 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...|++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999763
No 407
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.50 E-value=0.14 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...|++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 408
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.47 E-value=0.1 Score=56.38 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
..+-.++.|+||||||++...++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 445678999999999999988774
No 409
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.46 E-value=0.19 Score=47.80 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g 229 (612)
...+++.|++|+|||+|+.+++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999999998753
No 410
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.44 E-value=0.16 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
.+..|++.|++|+|||+|+.++.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345699999999999999999976
No 411
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.43 E-value=0.15 Score=45.62 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
.|++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 412
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.40 E-value=0.12 Score=47.52 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
.-|.|.|++|+|||+|++++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999873
No 413
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.37 E-value=0.084 Score=55.44 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+.|.||+|+|||||.+.+|+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999754
No 414
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.36 E-value=0.13 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 415
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.31 E-value=0.15 Score=46.78 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...|+|.|++|+|||+|+.++.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999863
No 416
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.30 E-value=0.16 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
.|++.|++|+|||+|+.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3889999999999999999764
No 417
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.24 E-value=0.15 Score=45.91 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~ 226 (612)
-|++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 418
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.22 E-value=0.56 Score=52.70 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.1
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHH
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
+..|. +.|.||+|+|||||++++++.
T Consensus 43 l~lp~-iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 43 LALPA-IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCC-EECCCCTTSCHHHHHHHHHSC
T ss_pred ccCCe-EEEECCCCChHHHHHHHHhCC
Confidence 34455 889999999999999999875
No 419
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.20 E-value=0.61 Score=48.52 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=31.2
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhcC---CccCceEEEEcCCCChHHHHHH
Q 007214 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG---VQFVRGVLLSGPPGTGKTLFAR 222 (612)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g---~~~p~gvLL~GPPGTGKT~LAr 222 (612)
...+|+++-..+.+.+.+... -+..|..++... +-..+.+++.+|+|+|||+.+-
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred hhcCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 345677765555444444331 133343333321 1123569999999999998743
No 420
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.12 E-value=0.11 Score=52.96 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||++.+++..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33458899999999999999998753
No 421
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.11 E-value=0.25 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...++++.||+|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 422
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.11 E-value=0.16 Score=46.07 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 423
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.11 E-value=0.14 Score=45.94 Aligned_cols=21 Identities=48% Similarity=0.782 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~ 226 (612)
-|++.|+||+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 424
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.10 E-value=0.13 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...-+.|.||+|||||||.+.+|+-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3455889999999999999999974
No 425
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.09 E-value=0.15 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~ 226 (612)
-.|++.|+||+|||+|++++.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999975
No 426
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.02 E-value=0.37 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
.|.|.|+||+|||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999864
No 427
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.02 E-value=0.17 Score=45.86 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..|++.|++|+|||+|++++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 428
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=90.00 E-value=1 Score=46.84 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=21.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHH
Q 007214 202 QFVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
..| -|.+.|++|+|||+|..++.+
T Consensus 33 ~lp-~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 33 SLP-AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCC-EEEEECBTTSSHHHHHHHHHT
T ss_pred cCC-EEEEECCCCCcHHHHHHHHhC
Confidence 344 688999999999999999987
No 429
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.99 E-value=0.19 Score=49.27 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc----CCCeeE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES----GLPFVF 234 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~----g~~~i~ 234 (612)
+.-|.+.|++|+||||+++.+++.+ |.+++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4457788999999999999999865 445554
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.99 E-value=0.18 Score=47.23 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
....|++.|++|+|||+|+.++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 431
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.90 E-value=0.39 Score=55.51 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...+.|.||.|+||||+.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456899999999999999999863
No 432
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.81 E-value=0.17 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 433
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.80 E-value=0.17 Score=46.73 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
.-|++.|++|+|||+|++++...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 434
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.79 E-value=0.5 Score=51.98 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=15.1
Q ss_pred ceEEEEcCCCChHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFAR 222 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (612)
+.+|+.+|+|+|||+...
T Consensus 41 ~d~lv~apTGsGKTl~~~ 58 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQ 58 (523)
T ss_dssp CCEEEECSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHH
Confidence 469999999999998543
No 435
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.79 E-value=0.18 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-.|++.|++|+|||+|+.++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998643
No 436
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.77 E-value=0.18 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45999999999999999999864
No 437
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.74 E-value=0.18 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|++++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 438
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.74 E-value=0.21 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
.--|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999875
No 439
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.71 E-value=0.18 Score=46.55 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..|++.|++|+|||+|+.+++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 440
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.67 E-value=0.18 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|++++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999874
No 441
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.66 E-value=0.18 Score=49.04 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
+.-+.|.||.|+||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345778999999999999999986
No 442
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.63 E-value=0.18 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.56 E-value=0.34 Score=47.43 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=26.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc--CCCeeEEe
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES--GLPFVFAS 236 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~--g~~~i~vs 236 (612)
....+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568899999999999999998665 55555555
No 444
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.56 E-value=0.19 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.-|+|.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999887654
No 445
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.47 E-value=0.21 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (612)
-.+|+||.|+|||++..|+.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997543
No 446
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=89.45 E-value=0.31 Score=48.36 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKESGLPF 232 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~~ 232 (612)
-+.|+|++|+|||++++.++..+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 477999999999999999998888775
No 447
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=89.41 E-value=1.2 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLA 225 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA 225 (612)
...++|.||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4678999999999999999993
No 448
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.40 E-value=0.31 Score=56.63 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH----cCCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE----SGLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e----~g~~~i~vs 236 (612)
-+++.||||||||+++..++.. .+.+++.+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 4789999999999887666543 244555444
No 449
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.35 E-value=0.18 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (612)
...|++.|++|+|||+|++++.+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999964
No 450
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=89.34 E-value=1.3 Score=49.03 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=31.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH--hCCchhhhhcCCc-----cCceEEEEcCCCChHHHH
Q 007214 164 SDTKSMYKEVVLGGDVWDLLDELMIY--MGNPMQYYERGVQ-----FVRGVLLSGPPGTGKTLF 220 (612)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~--l~~p~~~~~~g~~-----~p~gvLL~GPPGTGKT~L 220 (612)
...+.+|+++.....+...+.+.+.. +..|..++..-++ ..+.+++.+|+|+|||+.
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34567788876333233333333332 2233333332211 356899999999999984
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.29 E-value=0.19 Score=54.56 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+.|.||.|+|||||+|.+++-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34458999999999999999999854
No 452
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.28 E-value=0.21 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...|++.|++|+|||+|+.++...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446999999999999999999864
No 453
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.22 E-value=0.13 Score=48.37 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...-+.|.|++|+|||+|.+++++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445899999999999999998753
No 454
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.21 E-value=0.22 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|++|+|||+|++++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 455
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.20 E-value=1 Score=44.50 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFAR 222 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (612)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 569999999999998643
No 456
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.18 E-value=1.8 Score=45.20 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc----CCCeeEEecc
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~----g~~~i~vs~s 238 (612)
++++.+|+|+|||..+-+++.+. +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999888776554 5565555543
No 457
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.17 E-value=0.24 Score=46.24 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...|++.|++|+|||+|++++...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999874
No 458
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.16 E-value=0.21 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 459
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.11 E-value=0.21 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999864
No 460
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.11 E-value=0.24 Score=47.31 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
..-+++.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468888999999999999999775
No 461
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.03 E-value=0.23 Score=51.22 Aligned_cols=29 Identities=41% Similarity=0.549 Sum_probs=24.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCee
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i 233 (612)
.+|++|.|++|+|||++|.++.+. |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 468999999999999999999874 54443
No 462
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.01 E-value=0.24 Score=50.46 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.-+.|.||+|+|||||.+++++..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999998754
No 463
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.99 E-value=0.33 Score=46.86 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=25.4
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCC
Q 007214 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL 230 (612)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (612)
..|+.-|+|+|.||+||+++|+.+...+|.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 346677899999999999999999887753
No 464
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.98 E-value=0.2 Score=48.61 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357888999999999999998866
No 465
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.94 E-value=0.22 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...|++.|++|+|||+|++++.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999874
No 466
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.93 E-value=0.2 Score=46.07 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
.|++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999863
No 467
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.90 E-value=0.23 Score=45.27 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
.-.|++.|++|+|||+|++++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 468
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.89 E-value=0.53 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
.-|.|.|+||+|||+|..++.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999863
No 469
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.88 E-value=0.58 Score=53.21 Aligned_cols=18 Identities=44% Similarity=0.748 Sum_probs=16.0
Q ss_pred ceEEEEcCCCChHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFAR 222 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (612)
+.+++.||+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 579999999999999874
No 470
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.85 E-value=0.33 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-++|.||||+|||+|++.+|+..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34559999999999999999998753
No 471
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.84 E-value=0.34 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
.-+.|.||+|+|||||+++++ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999999 54
No 472
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.81 E-value=0.24 Score=46.22 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
.-|++.|+||+|||+|++++.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999873
No 473
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.79 E-value=0.3 Score=51.03 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCC
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLP 231 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (612)
..-+.|.||+|+|||+|.+.+++.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3458899999999999999999987543
No 474
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.72 E-value=0.22 Score=51.25 Aligned_cols=31 Identities=39% Similarity=0.425 Sum_probs=24.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCeeEE
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~~i~v 235 (612)
.+|+||.|++|+|||++|-++.. .|..++.=
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~D 177 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGD 177 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence 57899999999999999998864 46555533
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.71 E-value=0.24 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 476
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.70 E-value=0.19 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...-+-|.||+|+|||||+|++++-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33458899999999999999999754
No 477
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.68 E-value=1.1 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
+..-+-|.||+|+|||||++.+++..
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34458899999999999999998743
No 478
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.68 E-value=0.23 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 479
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.66 E-value=0.24 Score=46.07 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
--|++.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 34899999999999999999864
No 480
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.66 E-value=0.19 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
.-|++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999764
No 481
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.62 E-value=0.2 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|.|.|+||+|||+|..++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 482
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.62 E-value=0.39 Score=51.78 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=24.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (612)
...-+.|.||+|+|||+|++.+++.....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 33458899999999999999999987543
No 483
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.61 E-value=0.25 Score=45.16 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
.+..|++.|++|+|||+|+.++..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999873
No 484
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.57 E-value=0.23 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.57 E-value=0.3 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 007214 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (612)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~ 226 (612)
....|++.|++|+|||+|+.++..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999964
No 486
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.55 E-value=0.24 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (612)
...|++.|++|+|||+|+.++.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3469999999999999999998753
No 487
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.49 E-value=0.25 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 488
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.46 E-value=0.25 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 007214 206 GVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (612)
-|+|.|++|+|||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988764
No 489
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=88.44 E-value=0.24 Score=45.18 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 007214 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (612)
...|++.|++|+|||+|+.++...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999853
No 490
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.44 E-value=0.25 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 491
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.41 E-value=0.61 Score=47.57 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 007214 207 VLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e 227 (612)
|.+.|+||+|||+|..++.+.
T Consensus 13 v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 789999999999999999764
No 492
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.40 E-value=0.25 Score=45.86 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|++|+|||+|++++.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999875
No 493
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.35 E-value=0.43 Score=46.61 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=36.0
Q ss_pred eEEEEcCCCChHHH-HHHHHH--HHcCCCeeEEeccc--------ccchhhhh-----HHHHHHHHHHHhhcCCeEEEEc
Q 007214 206 GVLLSGPPGTGKTL-FARTLA--KESGLPFVFASGAE--------FTDSEKSG-----AARINEMFSIARRNAPAFVFVD 269 (612)
Q Consensus 206 gvLL~GPPGTGKT~-LAralA--~e~g~~~i~vs~s~--------~~~~~~~~-----~~~ir~lF~~A~~~~P~ILfID 269 (612)
-.+++||.|+|||+ |.+.+- .+.+..++.+...- +.+..+.. .....+++... .....+|+||
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 35789999999999 555542 33466655443211 00000000 01112333322 2346799999
Q ss_pred cchhh
Q 007214 270 EIDAI 274 (612)
Q Consensus 270 EiD~l 274 (612)
|++-+
T Consensus 109 EaQFf 113 (219)
T 3e2i_A 109 EVQFF 113 (219)
T ss_dssp CGGGS
T ss_pred chhcC
Confidence 99877
No 494
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.33 E-value=0.19 Score=45.79 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
--|++.|++|+|||+|++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 495
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.32 E-value=0.21 Score=53.66 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 007214 207 VLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e 227 (612)
+.|.||+|+|||||++++++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 496
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.28 E-value=0.26 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
-.|++.|++|+|||+|+.++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 497
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.22 E-value=0.22 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 498
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=88.19 E-value=0.73 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|.|.|.||+|||+|..++.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 499
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.18 E-value=0.25 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 007214 205 RGVLLSGPPGTGKTLFARTLAKE 227 (612)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (612)
..|+|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.17 E-value=0.38 Score=46.29 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=24.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc--CCCeeEEe
Q 007214 206 GVLLSGPPGTGKTLFARTLAKES--GLPFVFAS 236 (612)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~--g~~~i~vs 236 (612)
=|.+-|+.|+||||+++.++..+ |.+++...
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 36788999999999999999877 55655543
Done!