BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007215
         (612 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L7C|A Chain A, Biophysical Studies Of Lipid Interacting Regions Of Dgd2
           In Arabidopsis Thaliana
          Length = 19

 Score = 36.6 bits (83), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/18 (72%), Positives = 17/18 (94%)

Query: 360 QAFSKGAYFLGKMVWAKG 377
           Q F+KGAY++GKMVW+KG
Sbjct: 1   QPFTKGAYYIGKMVWSKG 18


>pdb|2KT6|A Chain A, Structural Homology Between The C-Terminal Domain Of The
           Papc Usher And Its Plug
          Length = 85

 Score = 33.1 bits (74), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 131 FGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQEL 190
           FG    S+K R + +V    L W++G          +  K + Q   + VP    SDQ+L
Sbjct: 21  FGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQ---VNVPETAISDQQL 77

Query: 191 VYPNVTFCSPEE 202
           + P    C+P++
Sbjct: 78  LLP----CTPQK 85


>pdb|3L48|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Papc
           Usher
 pdb|3L48|B Chain B, Crystal Structure Of The C-Terminal Domain Of The Papc
           Usher
 pdb|3L48|C Chain C, Crystal Structure Of The C-Terminal Domain Of The Papc
           Usher
 pdb|3L48|D Chain D, Crystal Structure Of The C-Terminal Domain Of The Papc
           Usher
 pdb|3L48|E Chain E, Crystal Structure Of The C-Terminal Domain Of The Papc
           Usher
          Length = 94

 Score = 33.1 bits (74), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 131 FGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQEL 190
           FG    S+K R + +V    L W++G          +  K + Q   + VP    SDQ+L
Sbjct: 24  FGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGKIQCQ---VNVPETAISDQQL 80

Query: 191 VYPNVTFCSPEE 202
           + P    C+P++
Sbjct: 81  LLP----CTPQK 88


>pdb|3FJB|A Chain A, Crystal Structure Of V31i Mutant Of Human Acidic
           Fibroblast Growth Factor
 pdb|3FJB|B Chain B, Crystal Structure Of V31i Mutant Of Human Acidic
           Fibroblast Growth Factor
          Length = 146

 Score = 29.3 bits (64), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 569 YCFTGNEFLR-LCTGAIPGTRDYDKQHCR 596
           YC  G  FLR L  G I GTRD   QH +
Sbjct: 21  YCSNGGHFLRILPDGTIDGTRDRSDQHIQ 49


>pdb|3BA5|A Chain A, Crystal Structure Of D28a Mutant Of Human Acidic
           Fibroblast Growth Factor
 pdb|3BA5|B Chain B, Crystal Structure Of D28a Mutant Of Human Acidic
           Fibroblast Growth Factor
          Length = 146

 Score = 29.3 bits (64), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 569 YCFTGNEFLR-LCTGAIPGTRDYDKQHCR 596
           YC  G  FLR L  G + GTRD   QH +
Sbjct: 21  YCSNGGHFLRILPAGTVDGTRDRSDQHIQ 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,186,615
Number of Sequences: 62578
Number of extensions: 880758
Number of successful extensions: 2020
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2019
Number of HSP's gapped (non-prelim): 5
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)