Query 007215
Match_columns 612
No_of_seqs 436 out of 3143
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 20:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02501 digalactosyldiacylgly 100.0 9E-105 2E-109 863.1 48.1 549 63-612 245-794 (794)
2 PLN02846 digalactosyldiacylgly 100.0 7.6E-70 1.6E-74 585.7 41.0 458 138-603 2-461 (462)
3 cd03796 GT1_PIG-A_like This fa 100.0 3.1E-36 6.6E-41 325.6 30.7 347 142-531 1-370 (398)
4 PLN02871 UDP-sulfoquinovose:DA 100.0 2E-35 4.3E-40 325.6 32.5 353 138-530 56-436 (465)
5 PRK10307 putative glycosyl tra 100.0 3E-35 6.5E-40 319.2 30.7 367 141-530 1-409 (412)
6 TIGR02468 sucrsPsyn_pln sucros 100.0 2.4E-34 5.3E-39 330.0 34.6 269 251-525 310-669 (1050)
7 PRK00654 glgA glycogen synthas 100.0 3.2E-34 7E-39 315.9 24.1 270 250-525 117-461 (466)
8 TIGR03449 mycothiol_MshA UDP-N 100.0 4.5E-33 9.8E-38 301.1 29.4 352 143-525 1-400 (405)
9 cd04962 GT1_like_5 This family 100.0 5.2E-33 1.1E-37 295.9 27.8 347 141-525 1-369 (371)
10 PLN02939 transferase, transfer 100.0 9.3E-33 2E-37 312.5 28.3 378 138-531 479-969 (977)
11 TIGR03088 stp2 sugar transfera 100.0 4.4E-32 9.6E-37 290.1 31.2 342 141-525 2-371 (374)
12 PLN02316 synthase/transferase 100.0 5E-32 1.1E-36 311.9 31.2 256 250-525 708-1032(1036)
13 TIGR02095 glgA glycogen/starch 100.0 1.3E-32 2.7E-37 304.1 25.3 271 249-525 126-471 (473)
14 TIGR02149 glgA_Coryne glycogen 100.0 1E-31 2.2E-36 288.2 30.6 269 249-525 81-385 (388)
15 cd03814 GT1_like_2 This family 100.0 1.5E-31 3.2E-36 281.4 30.6 344 142-525 1-364 (364)
16 TIGR02472 sucr_P_syn_N sucrose 100.0 5E-32 1.1E-36 296.4 27.0 277 242-524 103-438 (439)
17 cd03802 GT1_AviGT4_like This f 100.0 2.5E-31 5.4E-36 278.5 27.2 319 141-525 1-335 (335)
18 cd03792 GT1_Trehalose_phosphor 100.0 3.7E-31 7.9E-36 283.2 28.3 262 247-525 81-370 (372)
19 PRK15427 colanic acid biosynth 100.0 7.8E-31 1.7E-35 283.9 30.0 264 244-525 111-404 (406)
20 cd03791 GT1_Glycogen_synthase_ 100.0 1.3E-31 2.9E-36 296.1 24.3 271 249-525 127-475 (476)
21 PRK14099 glycogen synthase; Pr 100.0 3E-31 6.5E-36 292.5 27.0 275 249-530 131-480 (485)
22 PRK14098 glycogen synthase; Pr 100.0 3.6E-31 7.8E-36 292.1 27.4 209 315-525 220-484 (489)
23 PRK15179 Vi polysaccharide bio 100.0 1.1E-30 2.5E-35 295.0 31.8 279 240-526 389-693 (694)
24 cd03817 GT1_UGDG_like This fam 100.0 2.5E-30 5.5E-35 272.0 32.0 333 142-507 1-351 (374)
25 PRK15484 lipopolysaccharide 1, 100.0 1.2E-30 2.5E-35 280.4 29.3 250 249-525 97-376 (380)
26 cd03805 GT1_ALG2_like This fam 100.0 8E-31 1.7E-35 281.7 27.2 265 247-520 90-392 (392)
27 cd03821 GT1_Bme6_like This fam 100.0 2E-30 4.3E-35 272.6 29.3 349 142-522 1-375 (375)
28 cd03812 GT1_CapH_like This fam 100.0 3.7E-30 8.1E-35 272.1 29.6 323 142-506 1-338 (358)
29 KOG1111 N-acetylglucosaminyltr 100.0 4.1E-31 9E-36 264.7 20.7 347 142-530 2-368 (426)
30 TIGR02470 sucr_synth sucrose s 100.0 6.5E-30 1.4E-34 288.6 32.9 272 250-526 384-747 (784)
31 cd04951 GT1_WbdM_like This fam 100.0 3.6E-30 7.7E-35 271.9 29.0 337 142-525 1-359 (360)
32 cd04955 GT1_like_6 This family 100.0 4.1E-30 8.9E-35 272.1 28.8 340 142-525 1-363 (363)
33 cd03807 GT1_WbnK_like This fam 100.0 7.7E-30 1.7E-34 267.1 28.9 342 142-525 1-365 (365)
34 cd03800 GT1_Sucrose_synthase T 100.0 6.8E-30 1.5E-34 274.0 27.8 274 243-521 91-397 (398)
35 PRK09922 UDP-D-galactose:(gluc 100.0 1.8E-29 3.8E-34 269.1 29.8 323 141-525 1-354 (359)
36 cd03795 GT1_like_4 This family 100.0 1.5E-29 3.3E-34 266.9 28.8 317 142-504 1-337 (357)
37 cd03816 GT1_ALG1_like This fam 100.0 1.8E-29 3.9E-34 274.3 28.5 275 247-525 91-408 (415)
38 cd03801 GT1_YqgM_like This fam 100.0 2.5E-29 5.5E-34 262.1 28.3 350 142-525 1-374 (374)
39 cd03822 GT1_ecORF704_like This 100.0 4.8E-29 1E-33 262.8 29.3 336 142-525 1-366 (366)
40 cd05844 GT1_like_7 Glycosyltra 100.0 1.4E-29 3E-34 269.2 25.3 265 243-522 74-366 (367)
41 cd03794 GT1_wbuB_like This fam 100.0 3.7E-29 8E-34 264.0 28.3 268 249-520 97-393 (394)
42 cd03820 GT1_amsD_like This fam 100.0 9.9E-29 2.1E-33 256.6 30.7 327 142-521 1-347 (348)
43 cd03798 GT1_wlbH_like This fam 100.0 1.2E-28 2.6E-33 258.0 30.0 274 241-525 81-375 (377)
44 cd03813 GT1_like_3 This family 100.0 1.6E-29 3.5E-34 279.3 24.1 265 250-525 172-475 (475)
45 cd03818 GT1_ExpC_like This fam 100.0 1.8E-29 3.9E-34 272.6 23.9 207 315-522 156-396 (396)
46 cd03819 GT1_WavL_like This fam 100.0 1.6E-28 3.4E-33 259.4 28.2 250 240-508 67-340 (355)
47 PRK15490 Vi polysaccharide bio 100.0 1.4E-28 3E-33 266.8 27.9 277 240-525 269-574 (578)
48 PLN00142 sucrose synthase 100.0 4.3E-29 9.3E-34 281.9 24.8 272 250-525 407-769 (815)
49 cd03806 GT1_ALG11_like This fa 100.0 1.8E-28 3.9E-33 266.6 28.0 239 249-501 105-395 (419)
50 cd03809 GT1_mtfB_like This fam 100.0 8.5E-29 1.8E-33 260.8 23.3 340 142-522 1-365 (365)
51 TIGR03087 stp1 sugar transfera 100.0 3.8E-28 8.2E-33 262.4 28.7 269 243-525 96-395 (397)
52 cd03823 GT1_ExpE7_like This fa 100.0 1.5E-28 3.3E-33 257.7 24.9 332 142-525 1-358 (359)
53 PRK10125 putative glycosyl tra 100.0 2E-28 4.3E-33 264.7 25.6 194 316-525 191-403 (405)
54 cd03825 GT1_wcfI_like This fam 100.0 5.2E-28 1.1E-32 255.9 26.8 315 141-525 1-363 (365)
55 cd03799 GT1_amsK_like This is 100.0 4E-28 8.6E-33 255.8 25.5 257 241-519 69-354 (355)
56 PLN02949 transferase, transfer 100.0 1.8E-27 3.9E-32 260.3 30.7 208 315-531 220-459 (463)
57 cd03808 GT1_cap1E_like This fa 100.0 2.1E-27 4.6E-32 247.6 28.5 266 240-521 69-358 (359)
58 cd03811 GT1_WabH_like This fam 100.0 4.4E-27 9.5E-32 244.3 28.8 310 142-495 1-326 (353)
59 TIGR02918 accessory Sec system 100.0 1.8E-27 3.9E-32 262.7 25.1 264 243-525 203-498 (500)
60 PLN02275 transferase, transfer 100.0 1.9E-26 4.1E-31 247.0 30.9 243 248-496 97-371 (371)
61 cd03804 GT1_wbaZ_like This fam 99.9 1.6E-25 3.4E-30 237.4 28.0 250 243-520 75-350 (351)
62 PHA01630 putative group 1 glyc 99.9 7.4E-25 1.6E-29 230.3 25.3 226 271-525 61-329 (331)
63 cd04946 GT1_AmsK_like This fam 99.9 7.6E-25 1.7E-29 237.4 24.3 253 249-521 125-406 (407)
64 cd04949 GT1_gtfA_like This fam 99.9 3E-25 6.5E-30 237.0 20.7 255 249-519 97-371 (372)
65 PHA01633 putative glycosyl tra 99.9 6.3E-24 1.4E-28 221.4 25.2 221 277-522 71-335 (335)
66 cd03793 GT1_Glycogen_synthase_ 99.9 1.6E-22 3.5E-27 219.7 22.7 278 243-526 140-586 (590)
67 cd03788 GT1_TPS Trehalose-6-Ph 99.9 2.9E-22 6.3E-27 220.0 13.9 267 251-523 131-458 (460)
68 COG0297 GlgA Glycogen synthase 99.9 3.4E-21 7.4E-26 208.6 21.9 374 141-531 1-480 (487)
69 PRK13609 diacylglycerol glucos 99.9 1.4E-20 3.1E-25 202.1 23.5 254 241-525 94-370 (380)
70 PRK05749 3-deoxy-D-manno-octul 99.9 6.5E-21 1.4E-25 207.9 20.4 268 241-525 114-418 (425)
71 cd03785 GT1_MurG MurG is an N- 99.9 1.6E-20 3.4E-25 198.9 22.7 237 241-508 79-333 (350)
72 PRK00726 murG undecaprenyldiph 99.9 1.9E-20 4E-25 199.4 22.7 235 240-506 80-331 (357)
73 cd04950 GT1_like_1 Glycosyltra 99.9 3.3E-20 7.1E-25 199.0 20.8 256 249-525 100-370 (373)
74 PF00534 Glycos_transf_1: Glyc 99.8 3.3E-21 7.2E-26 183.1 9.3 156 352-508 4-167 (172)
75 cd01635 Glycosyltransferase_GT 99.8 2.9E-19 6.2E-24 175.2 23.3 221 143-482 1-229 (229)
76 TIGR02400 trehalose_OtsA alpha 99.8 8.7E-20 1.9E-24 199.3 20.9 259 251-524 127-454 (456)
77 TIGR01133 murG undecaprenyldip 99.8 1.9E-19 4.2E-24 190.4 22.2 234 241-508 80-330 (348)
78 PLN02605 monogalactosyldiacylg 99.8 1.5E-19 3.2E-24 194.5 20.3 240 241-507 90-356 (382)
79 PRK13608 diacylglycerol glucos 99.8 8.1E-19 1.7E-23 189.3 24.4 254 241-525 94-370 (391)
80 PLN03063 alpha,alpha-trehalose 99.8 1.2E-18 2.7E-23 201.5 17.1 267 251-525 147-476 (797)
81 KOG0853 Glycosyltransferase [C 99.7 1.9E-16 4.1E-21 169.4 21.0 209 315-525 209-466 (495)
82 PRK14501 putative bifunctional 99.7 2.6E-17 5.6E-22 190.5 14.8 190 333-525 229-461 (726)
83 COG0438 RfaG Glycosyltransfera 99.7 2.8E-15 6.1E-20 154.2 24.8 202 316-525 151-375 (381)
84 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 1E-15 2.2E-20 163.0 21.9 240 241-499 78-338 (363)
85 TIGR00236 wecB UDP-N-acetylglu 99.7 4.4E-16 9.5E-21 166.4 15.9 243 240-501 75-336 (365)
86 KOG1387 Glycosyltransferase [C 99.7 2.8E-14 6.1E-19 143.1 26.6 246 245-503 144-429 (465)
87 PF13692 Glyco_trans_1_4: Glyc 99.6 4.1E-16 8.8E-21 142.0 8.6 130 364-498 3-135 (135)
88 PRK09814 beta-1,6-galactofuran 99.6 7.7E-15 1.7E-19 155.0 18.4 219 244-496 56-298 (333)
89 PRK00025 lpxB lipid-A-disaccha 99.6 3.1E-14 6.7E-19 152.8 15.8 242 240-505 74-347 (380)
90 TIGR02398 gluc_glyc_Psyn gluco 99.6 2E-13 4.3E-18 149.0 19.9 163 334-501 250-451 (487)
91 KOG2941 Beta-1,4-mannosyltrans 99.5 1.4E-11 3.1E-16 124.1 26.9 255 249-504 101-411 (444)
92 TIGR02094 more_P_ylases alpha- 99.5 6.2E-12 1.3E-16 141.2 25.0 167 359-525 385-599 (601)
93 TIGR00215 lpxB lipid-A-disacch 99.4 1.4E-12 3.1E-17 140.3 15.4 235 241-498 79-347 (385)
94 PLN03064 alpha,alpha-trehalose 99.4 7.3E-12 1.6E-16 145.1 19.3 183 339-525 334-560 (934)
95 TIGR03713 acc_sec_asp1 accesso 99.3 7.8E-12 1.7E-16 138.7 13.1 140 364-508 320-497 (519)
96 PF05693 Glycogen_syn: Glycoge 99.1 2.9E-09 6.3E-14 116.2 17.8 97 430-526 464-581 (633)
97 cd04299 GT1_Glycogen_Phosphory 99.1 1.3E-08 2.8E-13 116.7 22.7 166 360-525 475-688 (778)
98 PRK12446 undecaprenyldiphospho 99.0 1.9E-07 4.1E-12 99.5 24.7 248 241-523 81-348 (352)
99 TIGR02919 accessory Sec system 98.9 5.6E-09 1.2E-13 113.5 12.5 161 316-499 240-412 (438)
100 PF13524 Glyco_trans_1_2: Glyc 98.9 1E-09 2.3E-14 93.2 5.5 85 438-522 1-92 (92)
101 COG0707 MurG UDP-N-acetylgluco 98.9 6.5E-08 1.4E-12 102.5 19.9 254 239-524 79-351 (357)
102 PF13439 Glyco_transf_4: Glyco 98.8 2.6E-09 5.6E-14 100.5 3.8 165 145-345 2-176 (177)
103 TIGR03590 PseG pseudaminic aci 98.8 3.9E-07 8.4E-12 93.9 19.6 188 242-468 71-269 (279)
104 COG1519 KdtA 3-deoxy-D-manno-o 98.7 2.3E-06 5E-11 90.1 20.2 250 242-508 114-395 (419)
105 PRK10117 trehalose-6-phosphate 98.5 3.1E-06 6.8E-11 92.1 16.9 181 339-525 227-452 (474)
106 PF00982 Glyco_transf_20: Glyc 98.5 2.6E-06 5.6E-11 93.6 16.2 238 250-501 140-443 (474)
107 PF13528 Glyco_trans_1_3: Glyc 98.5 9E-06 1.9E-10 85.0 19.7 217 241-495 84-317 (318)
108 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 7.5E-06 1.6E-10 87.7 18.4 233 240-496 82-337 (365)
109 cd03784 GT1_Gtf_like This fami 98.4 2E-05 4.4E-10 85.2 21.0 120 363-497 240-371 (401)
110 TIGR03492 conserved hypothetic 98.4 1.2E-05 2.5E-10 87.1 18.9 179 311-503 156-368 (396)
111 PF13579 Glyco_trans_4_4: Glyc 98.4 6.3E-07 1.4E-11 82.6 6.8 92 239-339 59-160 (160)
112 COG0380 OtsA Trehalose-6-phosp 98.3 6.6E-05 1.4E-09 81.7 19.9 160 338-502 250-449 (486)
113 PF09314 DUF1972: Domain of un 98.2 2.2E-05 4.7E-10 75.2 13.2 171 140-341 1-185 (185)
114 COG3914 Spy Predicted O-linked 98.2 6.1E-05 1.3E-09 81.8 17.6 179 344-525 411-612 (620)
115 PF02684 LpxB: Lipid-A-disacch 98.1 4.6E-05 9.9E-10 81.2 14.4 234 241-498 72-340 (373)
116 PLN02205 alpha,alpha-trehalose 98.1 9E-05 2E-09 87.0 17.3 137 362-501 338-520 (854)
117 PF04007 DUF354: Protein of un 98.0 0.00033 7.2E-09 73.6 18.9 218 238-497 70-309 (335)
118 PF02350 Epimerase_2: UDP-N-ac 98.0 6.1E-05 1.3E-09 80.0 12.7 239 241-498 57-318 (346)
119 TIGR00661 MJ1255 conserved hyp 98.0 0.0018 3.9E-08 68.1 23.4 115 365-499 191-315 (321)
120 PF13844 Glyco_transf_41: Glyc 97.9 8.9E-05 1.9E-09 80.6 11.5 172 351-525 273-465 (468)
121 COG0763 LpxB Lipid A disacchar 97.8 6.9E-05 1.5E-09 78.4 9.6 240 241-499 75-345 (381)
122 PF13477 Glyco_trans_4_2: Glyc 97.6 0.0007 1.5E-08 61.5 11.6 75 240-323 63-139 (139)
123 PRK01021 lpxB lipid-A-disaccha 97.6 0.0011 2.5E-08 73.9 14.2 199 241-465 300-513 (608)
124 COG0381 WecB UDP-N-acetylgluco 97.4 0.0075 1.6E-07 63.6 17.8 239 241-499 82-342 (383)
125 COG3980 spsG Spore coat polysa 97.4 0.0091 2E-07 60.0 17.3 91 364-464 160-251 (318)
126 PF08323 Glyco_transf_5: Starc 97.4 5.9E-05 1.3E-09 76.2 2.0 41 142-183 1-43 (245)
127 TIGR01426 MGT glycosyltransfer 97.0 0.0086 1.9E-07 64.7 13.7 122 364-498 227-359 (392)
128 COG3660 Predicted nucleoside-d 96.8 0.18 3.9E-06 50.4 18.8 147 317-469 111-275 (329)
129 COG4641 Uncharacterized protei 96.6 0.091 2E-06 55.2 16.2 153 338-502 168-331 (373)
130 PRK14089 ipid-A-disaccharide s 96.6 0.011 2.3E-07 62.8 9.5 78 376-465 183-260 (347)
131 COG1817 Uncharacterized protei 96.5 0.44 9.6E-06 48.9 19.7 217 240-498 73-314 (346)
132 PHA03392 egt ecdysteroid UDP-g 96.1 0.08 1.7E-06 59.3 13.9 119 364-498 298-432 (507)
133 PF04101 Glyco_tran_28_C: Glyc 96.0 0.00033 7.1E-09 66.2 -5.2 98 397-499 35-145 (167)
134 PF06258 Mito_fiss_Elm1: Mitoc 95.4 0.58 1.3E-05 49.0 16.1 147 317-469 99-259 (311)
135 KOG3742 Glycogen synthase [Car 95.1 0.0099 2.1E-07 62.8 1.6 96 428-525 493-611 (692)
136 PRK02797 4-alpha-L-fucosyltran 94.9 5.5 0.00012 41.3 21.0 153 364-525 146-315 (322)
137 PF07429 Glyco_transf_56: 4-al 94.6 4.1 8.9E-05 42.8 19.0 137 363-502 184-337 (360)
138 PRK14986 glycogen phosphorylas 94.5 0.16 3.5E-06 58.9 9.6 133 359-491 539-703 (815)
139 PLN02448 UDP-glycosyltransfera 94.5 0.31 6.7E-06 54.0 11.6 123 364-498 276-415 (459)
140 COG0058 GlgP Glucan phosphoryl 94.0 0.31 6.7E-06 56.0 10.3 123 360-482 484-628 (750)
141 PF00343 Phosphorylase: Carboh 93.2 0.65 1.4E-05 53.3 11.3 132 359-490 440-603 (713)
142 PF00201 UDPGT: UDP-glucoronos 93.2 0.56 1.2E-05 52.3 10.7 122 365-498 279-409 (500)
143 cd04300 GT1_Glycogen_Phosphory 93.1 0.42 9E-06 55.6 9.5 132 359-490 526-689 (797)
144 COG1819 Glycosyl transferases, 93.0 0.97 2.1E-05 49.2 11.9 125 361-499 235-369 (406)
145 PF05159 Capsule_synth: Capsul 92.7 1.1 2.3E-05 45.9 11.1 86 377-468 138-227 (269)
146 PRK10017 colanic acid biosynth 92.1 17 0.00036 39.9 20.0 114 379-499 260-393 (426)
147 PLN03004 UDP-glycosyltransfera 92.0 1.3 2.8E-05 48.9 11.4 125 364-497 272-423 (451)
148 TIGR02093 P_ylase glycogen/sta 91.8 0.53 1.2E-05 54.6 8.3 133 359-491 523-687 (794)
149 PRK14985 maltodextrin phosphor 91.5 0.32 6.9E-06 56.3 6.0 132 359-490 525-688 (798)
150 PF04464 Glyphos_transf: CDP-G 91.3 0.33 7.1E-06 51.9 5.7 175 315-498 134-336 (369)
151 PF10087 DUF2325: Uncharacteri 90.9 0.79 1.7E-05 39.1 6.6 74 397-470 2-86 (97)
152 COG4671 Predicted glycosyl tra 90.6 18 0.00038 38.2 17.0 129 363-498 220-365 (400)
153 PLN02208 glycosyltransferase f 89.8 4.2 9.2E-05 44.8 12.8 77 420-499 313-402 (442)
154 TIGR03609 S_layer_CsaB polysac 89.8 11 0.00025 38.8 15.5 86 377-468 189-278 (298)
155 PLN03007 UDP-glucosyltransfera 89.6 4.8 0.0001 44.9 13.3 126 364-498 287-440 (482)
156 PLN02562 UDP-glycosyltransfera 89.1 3.6 7.9E-05 45.4 11.6 124 364-497 275-412 (448)
157 cd03789 GT1_LPS_heptosyltransf 88.9 2 4.4E-05 43.9 9.0 86 377-469 138-227 (279)
158 PLN02410 UDP-glucoronosyl/UDP- 88.8 5.3 0.00012 44.1 12.7 77 419-498 325-410 (451)
159 PLN00414 glycosyltransferase f 88.2 7 0.00015 43.1 13.1 87 408-499 304-403 (446)
160 PLN02173 UDP-glucosyl transfer 87.6 6.1 0.00013 43.6 12.1 77 419-498 318-408 (449)
161 PLN02764 glycosyltransferase f 87.5 3.9 8.5E-05 45.1 10.6 76 420-498 319-407 (453)
162 TIGR02195 heptsyl_trn_II lipop 86.6 4 8.7E-05 42.9 9.8 105 355-466 166-277 (334)
163 PLN00164 glucosyltransferase; 86.2 9.8 0.00021 42.4 13.0 76 420-498 341-431 (480)
164 PF11440 AGT: DNA alpha-glucos 86.1 43 0.00093 34.2 19.5 235 242-497 54-352 (355)
165 COG2327 WcaK Polysaccharide py 86.1 34 0.00073 36.7 16.1 217 271-503 118-355 (385)
166 PF01075 Glyco_transf_9: Glyco 84.8 4.8 0.0001 40.1 9.0 97 363-466 106-209 (247)
167 PLN02210 UDP-glucosyl transfer 84.8 11 0.00024 41.7 12.5 126 364-498 271-415 (456)
168 PF15024 Glyco_transf_18: Glyc 84.5 13 0.00029 41.5 12.6 146 364-525 278-454 (559)
169 TIGR02193 heptsyl_trn_I lipopo 84.2 16 0.00035 38.0 12.9 125 364-496 181-319 (319)
170 COG0859 RfaF ADP-heptose:LPS h 82.8 5.6 0.00012 42.0 8.8 96 364-466 177-277 (334)
171 PLN02167 UDP-glycosyltransfera 82.5 8.5 0.00018 42.8 10.5 123 364-498 282-434 (475)
172 PLN02670 transferase, transfer 82.1 11 0.00024 41.9 11.0 125 365-498 281-429 (472)
173 PLN02554 UDP-glycosyltransfera 81.5 10 0.00022 42.3 10.6 76 419-497 343-439 (481)
174 PF12000 Glyco_trans_4_3: Gkyc 81.1 2.2 4.8E-05 40.5 4.4 92 249-345 64-170 (171)
175 PLN02534 UDP-glycosyltransfera 80.9 20 0.00043 40.1 12.6 75 420-497 346-443 (491)
176 PLN02992 coniferyl-alcohol glu 80.9 15 0.00031 41.0 11.5 76 420-498 340-427 (481)
177 KOG4626 O-linked N-acetylgluco 80.0 61 0.0013 36.8 15.3 141 353-496 749-902 (966)
178 cd01967 Nitrogenase_MoFe_alpha 79.1 69 0.0015 34.7 16.0 110 374-497 134-257 (406)
179 PLN02863 UDP-glucoronosyl/UDP- 78.9 25 0.00054 39.2 12.6 121 365-496 286-431 (477)
180 PF12038 DUF3524: Domain of un 78.6 14 0.00029 34.9 8.6 81 243-328 50-132 (168)
181 PLN02555 limonoid glucosyltran 77.0 28 0.00061 38.8 12.2 75 419-498 338-429 (480)
182 PLN02152 indole-3-acetate beta 76.6 25 0.00054 38.9 11.6 126 365-497 264-416 (455)
183 PRK13744 conjugal transfer pro 76.6 1.1 2.4E-05 34.4 0.7 16 25-40 16-31 (83)
184 PF06925 MGDG_synth: Monogalac 74.9 6.9 0.00015 36.8 5.9 68 241-328 79-150 (169)
185 PRK10964 ADP-heptose:LPS hepto 74.6 18 0.00039 37.7 9.6 94 367-468 183-281 (322)
186 PLN02207 UDP-glycosyltransfera 73.9 39 0.00085 37.5 12.3 127 364-497 277-425 (468)
187 PLN03015 UDP-glucosyl transfer 72.2 57 0.0012 36.3 13.0 75 420-497 337-425 (470)
188 PRK10422 lipopolysaccharide co 71.4 22 0.00047 37.7 9.4 99 363-468 184-290 (352)
189 PRK10916 ADP-heptose:LPS hepto 69.5 32 0.0007 36.3 10.2 94 365-465 183-286 (348)
190 TIGR00670 asp_carb_tr aspartat 67.0 75 0.0016 33.1 11.9 121 315-444 95-225 (301)
191 KOG3349 Predicted glycosyltran 66.1 47 0.001 30.8 8.7 94 365-467 6-108 (170)
192 TIGR02201 heptsyl_trn_III lipo 66.0 44 0.00096 35.1 10.4 96 364-466 183-286 (344)
193 TIGR00288 conserved hypothetic 65.7 35 0.00075 32.0 8.2 68 375-443 88-156 (160)
194 PF03016 Exostosin: Exostosin 65.6 6.4 0.00014 40.4 3.8 48 429-476 230-280 (302)
195 PF04230 PS_pyruv_trans: Polys 65.2 77 0.0017 31.1 11.6 88 375-467 189-284 (286)
196 TIGR01012 Sa_S2_E_A ribosomal 65.0 14 0.00031 35.8 5.7 99 375-475 43-148 (196)
197 PRK04020 rps2P 30S ribosomal p 63.1 19 0.00041 35.2 6.2 99 375-475 49-154 (204)
198 KOG1050 Trehalose-6-phosphate 60.7 57 0.0012 38.2 10.5 140 361-501 274-443 (732)
199 PF11071 DUF2872: Protein of u 56.6 68 0.0015 28.9 7.8 63 431-496 68-140 (141)
200 PLN02527 aspartate carbamoyltr 55.2 1.4E+02 0.003 31.2 11.4 122 315-444 96-227 (306)
201 PRK11891 aspartate carbamoyltr 54.5 1E+02 0.0023 33.7 10.7 123 315-444 182-317 (429)
202 PF01113 DapB_N: Dihydrodipico 54.3 27 0.00058 31.1 5.2 43 427-469 59-101 (124)
203 cd01972 Nitrogenase_VnfE_like 53.3 3.4E+02 0.0073 29.7 16.1 111 374-496 136-263 (426)
204 cd01080 NAD_bind_m-THF_DH_Cycl 52.2 60 0.0013 30.7 7.5 98 380-482 30-129 (168)
205 TIGR03646 YtoQ_fam YtoQ family 51.8 1E+02 0.0022 27.8 8.2 63 431-496 71-143 (144)
206 PTZ00254 40S ribosomal protein 51.6 22 0.00048 35.8 4.6 101 374-475 51-158 (249)
207 PF01408 GFO_IDH_MocA: Oxidore 50.9 87 0.0019 26.9 8.0 69 393-467 24-94 (120)
208 PRK00676 hemA glutamyl-tRNA re 49.7 95 0.0021 32.9 9.2 129 393-525 173-317 (338)
209 PF13407 Peripla_BP_4: Peripla 48.8 1.9E+02 0.0042 28.3 11.2 62 407-468 18-89 (257)
210 COG2984 ABC-type uncharacteriz 46.8 78 0.0017 33.0 7.8 87 380-469 147-249 (322)
211 PF09210 DUF1957: Domain of un 46.7 12 0.00025 32.4 1.6 36 71-113 67-102 (102)
212 TIGR00853 pts-lac PTS system, 44.8 42 0.00091 28.4 4.7 71 397-468 7-84 (95)
213 KOG0832 Mitochondrial/chloropl 44.6 2.6E+02 0.0056 27.9 10.4 38 437-475 175-213 (251)
214 cd05565 PTS_IIB_lactose PTS_II 44.4 62 0.0013 27.7 5.7 69 397-466 4-79 (99)
215 cd01965 Nitrogenase_MoFe_beta_ 43.6 3E+02 0.0064 30.1 12.4 94 374-467 131-253 (428)
216 TIGR01088 aroQ 3-dehydroquinat 43.1 56 0.0012 29.9 5.4 90 407-496 31-138 (141)
217 TIGR01283 nifE nitrogenase mol 42.9 5E+02 0.011 28.6 15.5 110 374-497 167-294 (456)
218 PF02670 DXP_reductoisom: 1-de 42.8 1.3E+02 0.0027 27.2 7.6 97 361-466 22-121 (129)
219 PRK08192 aspartate carbamoyltr 42.8 2.8E+02 0.006 29.4 11.5 123 315-444 100-235 (338)
220 PRK13015 3-dehydroquinate dehy 42.3 50 0.0011 30.4 5.0 90 407-496 33-140 (146)
221 PRK13396 3-deoxy-7-phosphohept 42.1 2.3E+02 0.0049 30.3 10.6 99 364-467 101-216 (352)
222 cd01425 RPS2 Ribosomal protein 41.5 3.3E+02 0.0072 26.2 12.3 80 394-474 56-166 (193)
223 KOG1192 UDP-glucuronosyl and U 41.3 1.3E+02 0.0029 33.1 9.5 127 365-497 280-421 (496)
224 PRK13398 3-deoxy-7-phosphohept 40.8 3.8E+02 0.0082 27.3 11.8 99 366-467 28-142 (266)
225 PRK05447 1-deoxy-D-xylulose 5- 40.4 1.1E+02 0.0023 33.1 7.9 87 375-468 36-124 (385)
226 TIGR00658 orni_carb_tr ornithi 40.1 3.4E+02 0.0074 28.2 11.6 117 315-443 94-224 (304)
227 cd00466 DHQase_II Dehydroquina 39.4 54 0.0012 29.9 4.7 90 407-496 31-138 (140)
228 PRK05395 3-dehydroquinate dehy 39.1 62 0.0013 29.8 5.1 90 407-496 33-140 (146)
229 PRK01713 ornithine carbamoyltr 39.0 2.7E+02 0.0058 29.5 10.7 119 315-443 101-233 (334)
230 cd05564 PTS_IIB_chitobiose_lic 38.5 71 0.0015 27.0 5.1 70 397-467 3-79 (96)
231 PRK00048 dihydrodipicolinate r 38.0 1.1E+02 0.0023 31.1 7.3 43 426-468 51-93 (257)
232 TIGR03316 ygeW probable carbam 37.8 2.8E+02 0.006 29.7 10.6 103 332-443 134-253 (357)
233 TIGR00715 precor6x_red precorr 37.4 2.9E+02 0.0062 28.0 10.2 115 364-496 131-255 (256)
234 PRK06718 precorrin-2 dehydroge 37.3 2.2E+02 0.0049 27.6 9.2 99 394-496 33-140 (202)
235 cd01971 Nitrogenase_VnfN_like 37.3 4.3E+02 0.0094 28.8 12.4 110 374-497 131-259 (427)
236 PRK02255 putrescine carbamoylt 36.8 2.4E+02 0.0053 29.9 9.9 119 315-444 97-231 (338)
237 PRK13397 3-deoxy-7-phosphohept 36.5 3.2E+02 0.0068 27.7 10.2 111 371-497 21-147 (250)
238 cd01974 Nitrogenase_MoFe_beta 34.9 6.4E+02 0.014 27.6 13.4 114 374-499 135-278 (435)
239 cd01973 Nitrogenase_VFe_beta_l 34.8 2.9E+02 0.0062 30.6 10.5 112 373-496 139-276 (454)
240 COG1887 TagB Putative glycosyl 34.7 6.2E+02 0.013 27.4 13.3 136 356-498 201-353 (388)
241 PRK03515 ornithine carbamoyltr 34.7 3.5E+02 0.0077 28.6 10.7 120 315-444 100-234 (336)
242 PRK05299 rpsB 30S ribosomal pr 34.5 5.1E+02 0.011 26.3 11.8 39 436-475 158-197 (258)
243 cd01968 Nitrogenase_NifE_I Nit 34.0 6.4E+02 0.014 27.3 15.9 110 375-496 133-254 (410)
244 COG0062 Uncharacterized conser 33.7 2.6E+02 0.0056 27.4 8.8 100 363-469 50-161 (203)
245 PRK13940 glutamyl-tRNA reducta 33.3 2.5E+02 0.0054 30.7 9.6 92 396-493 207-301 (414)
246 PLN02342 ornithine carbamoyltr 33.2 4.1E+02 0.0089 28.3 10.9 117 315-443 140-267 (348)
247 PRK13302 putative L-aspartate 32.7 2.4E+02 0.0051 28.8 8.9 71 393-468 30-100 (271)
248 COG3473 Maleate cis-trans isom 32.7 2.5E+02 0.0054 27.6 8.2 85 381-469 109-214 (238)
249 PF10686 DUF2493: Protein of u 32.7 2.6E+02 0.0056 22.3 7.4 54 364-419 4-59 (71)
250 COG0373 HemA Glutamyl-tRNA red 32.6 3.4E+02 0.0074 29.6 10.3 97 395-496 203-305 (414)
251 PF13905 Thioredoxin_8: Thiore 32.3 1.5E+02 0.0032 24.3 6.1 78 364-442 3-84 (95)
252 cd00027 BRCT Breast Cancer Sup 31.9 2.1E+02 0.0045 21.1 7.1 61 395-465 2-64 (72)
253 PF11997 DUF3492: Domain of un 31.8 1.6E+02 0.0035 30.1 7.4 77 250-328 171-258 (268)
254 PRK06683 hypothetical protein; 31.4 1.9E+02 0.0042 23.7 6.4 43 377-424 15-60 (82)
255 PRK05380 pyrG CTP synthetase; 30.9 8.3E+02 0.018 27.7 17.0 93 377-469 271-382 (533)
256 PRK04531 acetylglutamate kinas 30.5 1.8E+02 0.0038 31.7 7.8 118 362-497 36-162 (398)
257 PF01220 DHquinase_II: Dehydro 29.8 92 0.002 28.5 4.6 90 407-496 32-139 (140)
258 COG1830 FbaB DhnA-type fructos 29.6 5.4E+02 0.012 26.3 10.4 114 366-498 117-259 (265)
259 COG0684 MenG Demethylmenaquino 29.3 1.2E+02 0.0026 29.8 5.6 103 393-496 70-183 (210)
260 COG0757 AroQ 3-dehydroquinate 29.3 1.7E+02 0.0038 26.7 6.1 90 407-496 32-139 (146)
261 PF03853 YjeF_N: YjeF-related 29.3 3.7E+02 0.008 25.1 9.0 104 361-469 24-141 (169)
262 TIGR01761 thiaz-red thiazoliny 29.0 4.2E+02 0.0091 28.1 10.2 90 364-466 4-97 (343)
263 PRK00779 ornithine carbamoyltr 29.0 6.1E+02 0.013 26.4 11.3 117 315-443 98-225 (304)
264 cd06167 LabA_like LabA_like pr 28.8 2.1E+02 0.0046 25.7 7.2 66 373-439 78-146 (149)
265 PRK02102 ornithine carbamoyltr 28.5 4E+02 0.0086 28.2 9.8 118 315-443 101-232 (331)
266 cd00316 Oxidoreductase_nitroge 28.3 2.9E+02 0.0062 29.6 9.1 91 374-466 126-231 (399)
267 KOG0780 Signal recognition par 28.1 4E+02 0.0087 28.9 9.5 71 456-526 264-342 (483)
268 PF01531 Glyco_transf_11: Glyc 28.1 2.3E+02 0.005 29.3 8.0 85 377-466 189-275 (298)
269 PRK04523 N-acetylornithine car 28.0 4.4E+02 0.0095 27.9 10.1 103 332-444 136-253 (335)
270 cd01539 PBP1_GGBP Periplasmic 27.8 3.7E+02 0.0081 27.3 9.6 33 436-468 58-91 (303)
271 cd01750 GATase1_CobQ Type 1 gl 27.5 1.7E+02 0.0038 28.1 6.5 68 397-468 3-81 (194)
272 cd01976 Nitrogenase_MoFe_alpha 27.3 8.4E+02 0.018 26.6 17.1 109 375-497 147-269 (421)
273 PRK04284 ornithine carbamoyltr 27.1 5.6E+02 0.012 27.1 10.7 119 315-444 100-233 (332)
274 PF01012 ETF: Electron transfe 27.1 1.7E+02 0.0036 27.1 6.2 89 377-465 16-120 (164)
275 PRK15438 erythronate-4-phospha 27.0 2.1E+02 0.0046 30.8 7.6 78 392-469 114-210 (378)
276 PRK14804 ornithine carbamoyltr 27.0 5.6E+02 0.012 26.7 10.6 117 315-443 97-226 (311)
277 KOG2884 26S proteasome regulat 27.0 2.6E+02 0.0056 27.6 7.2 114 363-496 108-227 (259)
278 COG4567 Response regulator con 26.9 4.6E+02 0.01 24.6 8.5 129 393-523 8-154 (182)
279 cd05212 NAD_bind_m-THF_DH_Cycl 26.7 4.9E+02 0.011 23.7 9.0 74 391-468 25-100 (140)
280 TIGR02932 vnfK_nitrog V-contai 26.6 5.9E+02 0.013 28.1 11.3 111 374-496 143-280 (457)
281 TIGR02536 eut_hyp ethanolamine 26.2 4.4E+02 0.0096 25.8 9.0 67 394-468 20-99 (207)
282 TIGR02931 anfK_nitrog Fe-only 25.9 6.8E+02 0.015 27.7 11.6 111 374-496 147-283 (461)
283 TIGR01639 P_fal_TIGR01639 Plas 25.8 44 0.00096 25.9 1.6 25 26-55 18-42 (61)
284 KOG2501 Thioredoxin, nucleored 25.4 2.1E+02 0.0046 26.7 6.2 66 379-444 53-119 (157)
285 cd03146 GAT1_Peptidase_E Type 25.1 5E+02 0.011 25.2 9.4 92 376-469 15-124 (212)
286 PF01936 NYN: NYN domain; Int 24.9 1.6E+02 0.0035 26.2 5.5 67 374-441 75-144 (146)
287 COG4109 Predicted transcriptio 24.6 3.7E+02 0.008 28.6 8.4 54 395-451 115-171 (432)
288 TIGR01470 cysG_Nterm siroheme 24.4 4.1E+02 0.0088 25.8 8.5 99 394-496 32-140 (205)
289 COG2247 LytB Putative cell wal 24.4 3.8E+02 0.0083 28.1 8.4 75 392-468 75-164 (337)
290 PF08660 Alg14: Oligosaccharid 24.3 94 0.002 29.4 3.9 76 239-331 80-163 (170)
291 PRK15408 autoinducer 2-binding 24.3 4.6E+02 0.01 27.5 9.6 62 408-469 44-115 (336)
292 PRK05718 keto-hydroxyglutarate 24.0 3.5E+02 0.0075 26.6 7.9 80 382-465 54-134 (212)
293 PF10093 DUF2331: Uncharacteri 23.9 3.6E+02 0.0078 29.0 8.5 105 354-470 172-293 (374)
294 TIGR01768 GGGP-family geranylg 23.7 1E+02 0.0023 30.5 4.2 72 370-445 4-81 (223)
295 PF10649 DUF2478: Protein of u 23.6 1.1E+02 0.0024 28.7 4.1 40 436-475 94-140 (159)
296 TIGR01361 DAHP_synth_Bsub phos 23.3 3.8E+02 0.0083 27.2 8.3 115 368-496 28-156 (260)
297 cd05311 NAD_bind_2_malic_enz N 23.1 5E+02 0.011 25.6 9.0 92 364-465 26-126 (226)
298 TIGR01286 nifK nitrogenase mol 22.7 4.8E+02 0.01 29.4 9.7 113 373-497 191-336 (515)
299 PRK06015 keto-hydroxyglutarate 22.5 5.2E+02 0.011 25.2 8.7 80 381-464 42-122 (201)
300 CHL00073 chlN photochlorophyll 22.4 1.1E+03 0.024 26.2 14.7 89 396-498 195-289 (457)
301 KOG4131 Ngg1-interacting facto 22.4 1.4E+02 0.003 29.8 4.6 91 364-469 144-237 (272)
302 TIGR01182 eda Entner-Doudoroff 22.3 5.6E+02 0.012 25.0 8.9 80 381-464 46-126 (204)
303 PRK15424 propionate catabolism 21.9 4.7E+02 0.01 29.7 9.4 98 381-497 96-194 (538)
304 PF01081 Aldolase: KDPG and KH 21.9 2.8E+02 0.0061 26.9 6.7 80 382-465 47-127 (196)
305 KOG1047 Bifunctional leukotrie 21.9 32 0.00068 38.4 0.1 16 10-29 296-317 (613)
306 PF08288 PIGA: PIGA (GPI ancho 21.9 1.1E+02 0.0024 25.7 3.2 44 243-287 42-86 (90)
307 COG0052 RpsB Ribosomal protein 21.8 2.7E+02 0.0058 28.1 6.5 27 449-475 169-196 (252)
308 TIGR01279 DPOR_bchN light-inde 21.8 1E+03 0.022 25.7 12.5 110 374-499 130-250 (407)
309 PRK06719 precorrin-2 dehydroge 21.7 5E+02 0.011 24.0 8.2 37 432-468 67-103 (157)
310 COG1879 RbsB ABC-type sugar tr 21.7 5.1E+02 0.011 26.6 9.3 63 435-499 91-158 (322)
311 PF00185 OTCace: Aspartate/orn 21.6 4.3E+02 0.0092 24.5 7.7 73 364-445 3-83 (158)
312 PLN02696 1-deoxy-D-xylulose-5- 21.6 2.9E+02 0.0062 30.5 7.3 88 375-467 92-181 (454)
313 TIGR00746 arcC carbamate kinas 21.5 2.4E+02 0.0052 29.5 6.6 46 452-497 175-223 (310)
314 PRK10017 colanic acid biosynth 21.5 5.1E+02 0.011 28.4 9.4 42 366-407 3-46 (426)
315 COG0673 MviM Predicted dehydro 21.5 3E+02 0.0066 28.4 7.6 77 381-466 19-98 (342)
316 PRK12562 ornithine carbamoyltr 21.5 7.3E+02 0.016 26.3 10.2 120 315-444 100-234 (334)
317 PF04430 DUF498: Protein of un 21.4 1.7E+02 0.0036 25.4 4.6 42 383-424 42-87 (110)
318 cd05312 NAD_bind_1_malic_enz N 21.4 7.1E+02 0.015 25.6 9.8 40 426-465 94-138 (279)
319 PRK13376 pyrB bifunctional asp 21.3 6.6E+02 0.014 28.4 10.3 97 335-438 142-244 (525)
320 PF03435 Saccharop_dh: Sacchar 21.2 4.8E+02 0.01 27.8 9.2 77 386-466 15-98 (386)
321 cd05014 SIS_Kpsf KpsF-like pro 20.8 2.3E+02 0.005 24.6 5.6 72 396-467 2-82 (128)
322 PRK05562 precorrin-2 dehydroge 20.6 7.4E+02 0.016 24.5 9.5 72 394-469 48-120 (223)
323 TIGR01282 nifD nitrogenase mol 20.6 1.2E+03 0.025 25.9 16.9 108 375-496 180-303 (466)
324 PF04392 ABC_sub_bind: ABC tra 20.3 3.5E+02 0.0077 27.6 7.6 88 376-466 115-218 (294)
325 PF00862 Sucrose_synth: Sucros 20.3 3.3E+02 0.0072 30.5 7.4 71 249-324 399-477 (550)
326 PRK06091 membrane protein FdrA 20.3 5.8E+02 0.012 29.0 9.5 51 446-496 265-316 (555)
327 PF11238 DUF3039: Protein of u 20.1 74 0.0016 24.3 1.8 16 450-465 15-30 (58)
328 PRK08306 dipicolinate synthase 20.1 2.9E+02 0.0063 28.5 6.9 43 428-470 203-247 (296)
No 1
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=8.8e-105 Score=863.14 Aligned_cols=549 Identities=89% Similarity=1.405 Sum_probs=506.4
Q ss_pred cchhhHhhHHHHHHHHhhhhhhhhhhhccccCCCccccccccCccccccccccccccccccCCCccccCCCCCCCCCCce
Q 007215 63 KYQSYLDLCDKIVESLCSKRKEQLLLRSIAGGECSVLENDNINDELDLRIASVLQSTGHHYEGGFWTDFGKDDLSDKKRN 142 (612)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 142 (612)
..|+|||+|||+||+||||||+|++++++|++++++++|++..++||||||+++|||||||+||+|+++.+.++++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 324 (794)
T PLN02501 245 QLGVRKDICDKIVESLCSKRKNQLLLRSLSAGESSLLESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKHELSDGKRH 324 (794)
T ss_pred hhhhhHHHHHHHHHHHHhhccccccccccccccccccccccccccchhhhhhhhhccCccccCCcccCccccccccCCCe
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCcCcccccHHHHHHHhhhcCCccEEEEecccCCCCceEEcCC-cccCCchhHHHHHHHHHHhhhCCCCCc
Q 007215 143 VAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVGFKADF 221 (612)
Q Consensus 143 I~ivt~~~~P~~~G~a~~~l~~~~~La~~~~~~Vtl~~p~l~~G~~V~V~p~-~~f~~~~~~~~~~~~w~~~~v~~~~~~ 221 (612)
|+|||++.+|||+||++|++++|+||++.|+++||+++|||+..+|..|||+ .+|.+|++|+.|+++|+++++++.+.+
T Consensus 325 ~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~~~ 404 (794)
T PLN02501 325 VAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFKADF 404 (794)
T ss_pred EEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999996 899999999999999999999999999
Q ss_pred eecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCCCEEEEEeCCcHhHHHHhccchhHH
Q 007215 222 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQA 301 (612)
Q Consensus 222 ~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~~~~~~~~~ 301 (612)
+|.|||++|+.+.+||++++++.+.+..++|||||+++|.+++|++++.+|+++++|+|+++||++.+|...++.+.+..
T Consensus 405 ~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~ 484 (794)
T PLN02501 405 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQA 484 (794)
T ss_pred eEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHH
Confidence 99999999999999999999999999999999999999999999977899999999999999999999998888777777
Q ss_pred HHHHHHHHHHHHhcCCeEEEeChhhhccCCCcEEEeCCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHH
Q 007215 302 FFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYREL 381 (612)
Q Consensus 302 ~~~~~i~~~~~~~~ad~vI~~S~~~~~~~~~~i~vinGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~L 381 (612)
++.+.+++++.+++||.|+++|..+++++...+.++||||+++|.|..+.....+++...+.+.++|+||+.++||++.|
T Consensus 485 ~llk~l~~~v~r~hcD~VIaPS~atq~L~~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~L 564 (794)
T PLN02501 485 FFVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYREL 564 (794)
T ss_pred HHHHHHHHHHHHhhCCEEEcCCHHHHHhcccceeecccccccccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHH
Confidence 78889999999888999999999998888777777799999999988665444556665555678999999999999999
Q ss_pred HHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCc
Q 007215 382 IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKF 461 (612)
Q Consensus 382 i~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~P 461 (612)
|+|++.+.++.++++|+|+|+|++.+.++++++++++.+.|+|+.++..++|+.+|+||+||.+|+||++++||||||+|
T Consensus 565 LeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlP 644 (794)
T PLN02501 565 IDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKF 644 (794)
T ss_pred HHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCC
Confidence 99999998878899999999999999999999999988999999998889999999999999999999999999999999
Q ss_pred EEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHHHHHHHHHhccccccCCCCcccccc
Q 007215 462 VICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYSELNRILNNNKDDAKSSR 541 (612)
Q Consensus 462 VVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~~~~~~~~sWe~~~~~~~~~y~~~~~~~~~~~~~~~~~ 541 (612)
||++++|+.+++.++.+|++++|+++++++|.+++.+++.+........+||+++++++++..+++++++.... .....
T Consensus 645 VVATd~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a~~~~SWeAaadrLle~~~~~~~~~~~~~-~~~~~ 723 (794)
T PLN02501 645 VVCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQRYNLSWEAATQRFMEYSDLDKVLNNGDD-AKLSK 723 (794)
T ss_pred EEEecCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHHHHhhCCHHHHHHHHHHhhccccccccccc-ccccc
Confidence 99999999887778889998899999999999999776655444446689999999999999998887765322 11223
Q ss_pred cccccccccCCCcChhhhHHhHHHHHHHhhcccccceeeeeecCCCCcchHhHHHHcCCCCCCCCCCCCCC
Q 007215 542 NDGKIIRKSFSVPNLSEVVDGGLAFAHYCFTGNEFLRLCTGAIPGTRDYDKQHCRDLHLLPPQVENPIYGW 612 (612)
Q Consensus 542 ~~~~~~~~~~~~p~l~~~~d~~l~~~~~~~~~~~~~r~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (612)
...+++..+.+.|+|++++|++++..|++++|.+.+|++||++|||+++|+|+|+||||.+|.+++|+|||
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~r~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (794)
T PLN02501 724 SGGKSITKSVSMPNLSEMVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPHVENPIYGW 794 (794)
T ss_pred ccccchhhhccCCcHHHHhhhHHHHHHHHhhccHHHHHHhcCCCCCCCcCHHHHHhcCCCCCCCCCCCCCC
Confidence 34455666777889999999999999999999999999999999999999999999999999999999999
No 2
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=7.6e-70 Score=585.68 Aligned_cols=458 Identities=58% Similarity=1.027 Sum_probs=398.3
Q ss_pred CCCceEEEEeCCCCCCcCcccccHHHHHHHhhhcCCccEEEEecccCCCCceEEcCC-cccCCchhHHHHHHHHHHhhhC
Q 007215 138 DKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVG 216 (612)
Q Consensus 138 ~~~~kI~ivt~~~~P~~~G~a~~~l~~~~~La~~~~~~Vtl~~p~l~~G~~V~V~p~-~~f~~~~~~~~~~~~w~~~~v~ 216 (612)
+++|||+|||+.|+|+++|++++...++.+|+++|+|+|+++.||++...|..|+|+ .+|.++++++.++++|+.+++.
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~ 81 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERIS 81 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEE
Confidence 357999999999999999988888888889999988999999999998888888996 8899999999999999988988
Q ss_pred CCCCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCCCEEEEEeCCcHhHHHHhcc
Q 007215 217 FKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKN 296 (612)
Q Consensus 217 ~~~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~~~~ 296 (612)
+.+.+++++||++|+..++++.+..++.+.+.+.+|||||+++|++++|+.++.+|+++++++|+++||++.+|...+..
T Consensus 82 r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~ 161 (462)
T PLN02846 82 FLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKN 161 (462)
T ss_pred EecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhcc
Confidence 99999999999988888888888999999999999999999999999998667889888889999999999999877665
Q ss_pred chhHHHHHHHHHHHHHHhcCCeEEEeChhhhccCCCcEEEeCCCCCCCCCCCccchhhhhhc-cCCCCcEEEEEeccCCc
Q 007215 297 GALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQG-QQAFSKGAYFLGKMVWA 375 (612)
Q Consensus 297 ~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~~~~~~i~vinGVd~~~f~~~~~~~~~~~~~-~~~~~~~il~vGrl~~~ 375 (612)
+....++.+.+.+++.+.+||.++++|..++++.+..+.+++|||+++|.+..+. .+.... .....++++|+||+.++
T Consensus 162 g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~GVd~~~f~~~~~~-~~~~~~~~~~~~~~~l~vGRL~~e 240 (462)
T PLN02846 162 GRVKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVHGVNPKFLEIGKLK-LEQQKNGEQAFTKGAYYIGKMVWS 240 (462)
T ss_pred chHHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCceechhhcCCCccc-HhhhcCCCCCcceEEEEEecCccc
Confidence 5556677788889988888999999999888877666666689999999887543 222221 11224578999999999
Q ss_pred cCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHH
Q 007215 376 KGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEA 455 (612)
Q Consensus 376 Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEA 455 (612)
||++.||+|++++.+..++++|+|+|+|++.++++++++++++.+.|+++..+.+++++.||+||+||.+|+||++++||
T Consensus 241 K~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEA 320 (462)
T PLN02846 241 KGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEA 320 (462)
T ss_pred CCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHHH
Confidence 99999999999998877899999999999999999999999988666666777778999999999999999999999999
Q ss_pred HHcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHHHHHHHHHhccccccCCCC
Q 007215 456 LAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYSELNRILNNNKD 535 (612)
Q Consensus 456 MA~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~~~~~~~~sWe~~~~~~~~~y~~~~~~~~~~~ 535 (612)
||||+|||+++.++.+++.++.||+++.|.++++++|.+++.+++.......++.|||+++++++++.|++++..+..+.
T Consensus 321 mA~G~PVVa~~~~~~~~v~~~~ng~~~~~~~~~a~ai~~~l~~~~~~~~~~a~~~~SWe~~~~~l~~~~~~~~~~~~~~~ 400 (462)
T PLN02846 321 LAMGKIVVCANHPSNEFFKQFPNCRTYDDGKGFVRATLKALAEEPAPLTDAQRHELSWEAATERFLRVADLDLPSSAKPN 400 (462)
T ss_pred HHcCCcEEEecCCCcceeecCCceEecCCHHHHHHHHHHHHccCchhHHHHHHHhCCHHHHHHHHHHHhccCCcCccccc
Confidence 99999999999999888888999999999999999999999766655555566789999999999999998776654321
Q ss_pred cccccccccccccccCCCcChhhhHHhHHHHHHHhhcccccceeeeeecCCCCcchHhHHHHcCCCCC
Q 007215 536 DAKSSRNDGKIIRKSFSVPNLSEVVDGGLAFAHYCFTGNEFLRLCTGAIPGTRDYDKQHCRDLHLLPP 603 (612)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~p~l~~~~d~~l~~~~~~~~~~~~~r~~~g~~~g~~~~~~~~~~~~~~~~~ 603 (612)
. ...++..+.+ |+|++++|.+++..|++++|.|..|++||++|||++.|+|+|+||||++|
T Consensus 401 ~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (462)
T PLN02846 401 K------SSLKNFMSTS-PNLKKNMEDASAYLHNVASGFETSRRAFGAIPGSLQPDEQQCKELGLALQ 461 (462)
T ss_pred c------ccccchhccC-ccHhhhhhhHHHHHHHHhhhhHHHHHHccCCCCCCCCCHHHHHhcCCCCC
Confidence 1 1122333333 68999999999999999999999999999999999999999999999987
No 3
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=3.1e-36 Score=325.60 Aligned_cols=347 Identities=14% Similarity=0.145 Sum_probs=244.4
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
||++|+..|.|..|| +++.+..++ +|++. ||+|+|+ +.. .... ...+ . ....+
T Consensus 1 kI~~v~~~~~p~~GG-~e~~~~~la~~L~~~--------------G~~V~v~~~~~--~~~~-~~~~----~---~~~i~ 55 (398)
T cd03796 1 RICMVSDFFYPNLGG-VETHIYQLSQCLIKR--------------GHKVVVITHAY--GNRV-GIRY----L---TNGLK 55 (398)
T ss_pred CeeEEeecccccccc-HHHHHHHHHHHHHHc--------------CCeeEEEeccC--CcCC-Cccc----c---cCcee
Confidence 799999999998766 888888888 99999 8888884 221 1110 0011 0 00011
Q ss_pred CceecccCCCcccc-cccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccc
Q 007215 220 DFKISFYPGKFSKE-RRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG 297 (612)
Q Consensus 220 ~~~i~~~~~~y~~~-~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~ 297 (612)
...++......... .........+.+.+.+.+|||||++++....... +..+.+..+ |+|.+.|+.+....
T Consensus 56 v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~-~~~~~~~~~~~~v~t~h~~~~~~~------ 128 (398)
T cd03796 56 VYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERITIVHGHQAFSALAHE-ALLHARTMGLKTVFTDHSLFGFAD------ 128 (398)
T ss_pred EEEecceeccCCccccchhhhHHHHHHHHHhcCCCEEEECCCCchHHHH-HHHHhhhcCCcEEEEecccccccc------
Confidence 11111111000000 1111123445566667899999999875432211 234456666 99999998642110
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEE
Q 007215 298 ALQAFFVKHINNWVTRAYCDKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFL 369 (612)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~v 369 (612)
........+.++..+ .+|.++++|+..++ ++.+++.++ ||+|++.|.+.... ..+++++++|+
T Consensus 129 -~~~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~-------~~~~~~~i~~~ 199 (398)
T cd03796 129 -ASSIHTNKLLRFSLA-DVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK-------RDNDKITIVVI 199 (398)
T ss_pred -hhhHHhhHHHHHhhc-cCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc-------CCCCceEEEEE
Confidence 001112223344333 68999999997654 334667777 89998877654321 12456789999
Q ss_pred eccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCC
Q 007215 370 GKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS 445 (612)
Q Consensus 370 Grl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~ 445 (612)
||+.++||++.|++|++.+.++.++++|+++|+|+..+.++++++++++. |.|+|.+++.+ ++++.||++|+||..
T Consensus 200 grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~ 279 (398)
T cd03796 200 SRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLT 279 (398)
T ss_pred eccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChh
Confidence 99999999999999999998888999999999999888999999999875 89999987655 999999999999999
Q ss_pred CcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHhCCCCCC------CHHHHhcCCHHHHHH
Q 007215 446 DVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPL------TPEQRYNLSWEAATQ 518 (612)
Q Consensus 446 E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~------~~~~~~~~sWe~~~~ 518 (612)
|+||++++||||||+|||+|+.|+..+++.+.+++++ .|+++++++|.+++.+..+.. .....+.|||+.+++
T Consensus 280 E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 359 (398)
T cd03796 280 EAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAK 359 (398)
T ss_pred hccCHHHHHHHHcCCCEEECCCCCchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHH
Confidence 9999999999999999999999997666665445555 899999999999996533331 144567899999999
Q ss_pred HHHHHHhcccccc
Q 007215 519 RFIEYSELNRILN 531 (612)
Q Consensus 519 ~~~~~y~~~~~~~ 531 (612)
+|.+.|+ +++.
T Consensus 360 ~~~~~y~--~l~~ 370 (398)
T cd03796 360 RTEKVYD--RILQ 370 (398)
T ss_pred HHHHHHH--HHhc
Confidence 9999999 6553
No 4
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=2e-35 Score=325.64 Aligned_cols=353 Identities=19% Similarity=0.168 Sum_probs=245.7
Q ss_pred CCCceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEE-cCCcccCCchhHHHHHHHHHHhhh
Q 007215 138 DKKRNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELV-YPNVTFCSPEEQENYMRNWLEERV 215 (612)
Q Consensus 138 ~~~~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V-~p~~~f~~~~~~~~~~~~w~~~~v 215 (612)
.++|||++++..+++...||+.+.+..++ +|.+. ||+|+| .+.. ..++...+. ++
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~--------------G~eV~vlt~~~--~~~~~~~g~-------~v 112 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREM--------------GDEVLVVTTDE--GVPQEFHGA-------KV 112 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHC--------------CCeEEEEecCC--CCCccccCc-------ee
Confidence 56799999997655444444778887777 99999 888888 3331 111111111 11
Q ss_pred CCCCCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHh
Q 007215 216 GFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKRE 294 (612)
Q Consensus 216 ~~~~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~ 294 (612)
.....+.++++.. ...+......+.+.+.+.+||+||++.|....+.. ..+++..+ |+|.++|++...+....
T Consensus 113 ~~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~--~~~ak~~~ip~V~~~h~~~~~~~~~~ 186 (465)
T PLN02871 113 IGSWSFPCPFYQK----VPLSLALSPRIISEVARFKPDLIHASSPGIMVFGA--LFYAKLLCVPLVMSYHTHVPVYIPRY 186 (465)
T ss_pred eccCCcCCccCCC----ceeeccCCHHHHHHHHhCCCCEEEECCCchhHHHH--HHHHHHhCCCEEEEEecCchhhhhcc
Confidence 1111111122111 01111112356677778899999999886554443 34455666 99999999876654332
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc----c---CCCcEEEe-CCCCCCCCCCCcc-chhhhhhc-cCCCCc
Q 007215 295 KNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD----L---PKSVICNV-HGVNPKFLQIGEK-VATDREQG-QQAFSK 364 (612)
Q Consensus 295 ~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~----~---~~~~i~vi-nGVd~~~f~~~~~-~~~~~~~~-~~~~~~ 364 (612)
....+...+ ..+.+++.+ .+|.++++|+.+++ . +.+++.++ ||+|.+.|.+... ...+.++. ..++++
T Consensus 187 ~~~~~~~~~-~~~~r~~~~-~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~ 264 (465)
T PLN02871 187 TFSWLVKPM-WDIIRFLHR-AADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKP 264 (465)
T ss_pred cchhhHHHH-HHHHHHHHh-hCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCe
Confidence 211111111 223444444 68999999997665 1 24667777 8999988866432 22333332 234568
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEec
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINP 442 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~P 442 (612)
+|+|+||+.++||++.++++++++ ++++|+|+|+|+..+++++++++. +|.|+|.+++.+ ++|+.||+||+|
T Consensus 265 ~i~~vGrl~~~K~~~~li~a~~~~----~~~~l~ivG~G~~~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~~aDv~V~p 338 (465)
T PLN02871 265 LIVYVGRLGAEKNLDFLKRVMERL----PGARLAFVGDGPYREELEKMFAGT--PTVFTGMLQGDELSQAYASGDVFVMP 338 (465)
T ss_pred EEEEeCCCchhhhHHHHHHHHHhC----CCcEEEEEeCChHHHHHHHHhccC--CeEEeccCCHHHHHHHHHHCCEEEEC
Confidence 899999999999999999999876 589999999999888888887653 599999997655 999999999999
Q ss_pred cCCCcchHHHHHHHHcCCcEEeeCCCCccc-ccc---CCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhc
Q 007215 443 SISDVLCTATAEALAMGKFVICADHPSNEF-FRS---FPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYN 510 (612)
Q Consensus 443 S~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~---~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~ 510 (612)
|..|+||++++||||||+|||+|+.||..+ +.+ +.+|+++ +|+++++++|.++++ +++.+. +.....
T Consensus 339 S~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~ 417 (465)
T PLN02871 339 SESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA-DPELRERMGAAAREEVEK 417 (465)
T ss_pred CcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998655 445 6889988 799999999999995 444332 222357
Q ss_pred CCHHHHHHHHHH-HHhccccc
Q 007215 511 LSWEAATQRFIE-YSELNRIL 530 (612)
Q Consensus 511 ~sWe~~~~~~~~-~y~~~~~~ 530 (612)
|+|+.+++++++ .|+ +++
T Consensus 418 fsw~~~a~~l~~~~Y~--~~~ 436 (465)
T PLN02871 418 WDWRAATRKLRNEQYS--AAI 436 (465)
T ss_pred CCHHHHHHHHHHHHHH--HHH
Confidence 999999999998 798 544
No 5
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=3e-35 Score=319.20 Aligned_cols=367 Identities=14% Similarity=0.063 Sum_probs=249.7
Q ss_pred ceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEE-cCCcccCCchhHHHHHHHH-HHhhhCC
Q 007215 141 RNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELV-YPNVTFCSPEEQENYMRNW-LEERVGF 217 (612)
Q Consensus 141 ~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V-~p~~~f~~~~~~~~~~~~w-~~~~v~~ 217 (612)
|||++++..|+|..+| +...+..++ +|.+. ||+|+| ++...+........+.... ..+....
T Consensus 1 mkIlii~~~~~P~~~g-~~~~~~~l~~~L~~~--------------G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (412)
T PRK10307 1 MKILVYGINYAPELTG-IGKYTGEMAEWLAAR--------------GHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGG 65 (412)
T ss_pred CeEEEEecCCCCCccc-hhhhHHHHHHHHHHC--------------CCeEEEEecCCCCCCCCCCcccccccceeeecCC
Confidence 6899999999999887 556666777 99999 888888 3321111100000000000 0000111
Q ss_pred CCCceecccCCCcccccccccCh--------HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcH
Q 007215 218 KADFKISFYPGKFSKERRSIIPA--------GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL 288 (612)
Q Consensus 218 ~~~~~i~~~~~~y~~~~~si~~~--------~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~ 288 (612)
....+++.+........+.+... ..+.+.+ +.+||+||++.|..+.... +...+++.+ |++..+|+.++
T Consensus 66 i~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~p~~~~~~~-~~~~~~~~~~~~v~~~~d~~~ 143 (412)
T PRK10307 66 VTVWRCPLYVPKQPSGLKRLLHLGSFALSSFFPLLAQR-RWRPDRVIGVVPTLFCAPG-ARLLARLSGARTWLHIQDYEV 143 (412)
T ss_pred eEEEEccccCCCCccHHHHHHHHHHHHHHHHHHHhhcc-CCCCCEEEEeCCcHHHHHH-HHHHHHhhCCCEEEEeccCCH
Confidence 11112221111001111111100 1111222 3789999999887654432 344556666 99988888765
Q ss_pred hHHHHhc--cchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc------cCCCcEEEe-CCCCCCCCCCCcc---chhhhh
Q 007215 289 EYIKREK--NGALQAFFVKHINNWVTRAYCDKVLRLSAATQD------LPKSVICNV-HGVNPKFLQIGEK---VATDRE 356 (612)
Q Consensus 289 ~~~~~~~--~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~---~~~~~~ 356 (612)
+...... ......++...+++++.+ .+|.++++|+.+++ ...+++.++ ||+|++.|.+... ...+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 222 (412)
T PRK10307 144 DAAFGLGLLKGGKVARLATAFERSLLR-RFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADADVDALRAQ 222 (412)
T ss_pred HHHHHhCCccCcHHHHHHHHHHHHHHh-hCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccchHHHHHH
Confidence 5431111 122223344556666665 69999999997765 234567777 8999887665422 235566
Q ss_pred hccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc-eEEecCCCCHH--HHH
Q 007215 357 QGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKGRDHAD--DSL 433 (612)
Q Consensus 357 ~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~-v~f~g~~~~~~--~ll 433 (612)
+++++++++++|+|++.+.||++.|++|++++.+ .++++|+|+|+|+..++++++++++++. |.|+|.+++.+ +++
T Consensus 223 ~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~-~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~ 301 (412)
T PRK10307 223 LGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRD-RPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALL 301 (412)
T ss_pred cCCCCCCEEEEEcCccccccCHHHHHHHHHHhcc-CCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHH
Confidence 7777777899999999999999999999998854 4789999999999999999999988876 99999887665 999
Q ss_pred hccceEEeccCCCc----chHHHHHHHHcCCcEEeeCCCCc--cccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-
Q 007215 434 HGYKVFINPSISDV----LCTATAEALAMGKFVICADHPSN--EFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT- 504 (612)
Q Consensus 434 ~~aDv~V~PS~~E~----fgl~llEAMA~G~PVVas~~gg~--~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~- 504 (612)
+.||++|+||..|+ +|.+++||||||+|||+|+.||. .+++. .+|+++ +|+++++++|.+++++ ++.+.
T Consensus 302 ~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~-~~G~~~~~~d~~~la~~i~~l~~~-~~~~~~ 379 (412)
T PRK10307 302 KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE-GIGVCVEPESVEALVAAIAALARQ-ALLRPK 379 (412)
T ss_pred HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh-CCcEEeCCCCHHHHHHHHHHHHhC-HHHHHH
Confidence 99999999999998 57789999999999999998763 45555 688887 8999999999999954 43222
Q ss_pred ------HHHHhcCCHHHHHHHHHHHHhccccc
Q 007215 505 ------PEQRYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 505 ------~~~~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
....+.|+|+.++++|.+.|+ +++
T Consensus 380 ~~~~a~~~~~~~fs~~~~~~~~~~~~~--~~~ 409 (412)
T PRK10307 380 LGTVAREYAERTLDKENVLRQFIADIR--GLV 409 (412)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHH--HHh
Confidence 334567999999999999998 654
No 6
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=2.4e-34 Score=329.98 Aligned_cols=269 Identities=14% Similarity=0.101 Sum_probs=195.2
Q ss_pred CccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHH-hccch---------hHHHHHHHHHHHHHHhcCCeE
Q 007215 251 DADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR-EKNGA---------LQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 251 ~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~-~~~~~---------~~~~~~~~i~~~~~~~~ad~v 319 (612)
.|||||+|.+.. ++. +...+..++ |+|.+.|+.-.....+ ...+. +........++.... .||.|
T Consensus 310 ~pDvIHaHyw~s-G~a--a~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~-~Ad~V 385 (1050)
T TIGR02468 310 WPYVIHGHYADA-GDS--AALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLD-ASEIV 385 (1050)
T ss_pred CCCEEEECcchH-HHH--HHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHH-hcCEE
Confidence 499999996542 333 256677778 9999999864222211 01110 000111223445444 69999
Q ss_pred EEeChhhhc-----c---C---------------------CCcEEEe-CCCCCCCCCCCccch-----------------
Q 007215 320 LRLSAATQD-----L---P---------------------KSVICNV-HGVNPKFLQIGEKVA----------------- 352 (612)
Q Consensus 320 I~~S~~~~~-----~---~---------------------~~~i~vi-nGVd~~~f~~~~~~~----------------- 352 (612)
|++|....+ + + ..++.|| ||||++.|.|.....
T Consensus 386 IasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~ 465 (1050)
T TIGR02468 386 ITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPP 465 (1050)
T ss_pred EEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccch
Confidence 999985543 1 1 1277788 899999887642111
Q ss_pred ---hhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhcc--CCCeEEEEEecCCCH-----------HHHHHHHHHc
Q 007215 353 ---TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND--LDGFKLDVFGNGEDA-----------YEVQSAAKRL 416 (612)
Q Consensus 353 ---~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~--~~~~~LvIvG~g~~~-----------~~l~~~~~~l 416 (612)
...++...+++++|+|+||+.++||++.||+|+..+.+. .+++. +|+|++++. ..++++++++
T Consensus 466 ~~~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 466 IWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred hhHHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 112344567788999999999999999999999998643 35665 567876643 3467788999
Q ss_pred CCc--eEEecCCCCHH--HHHhcc----ceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEec--CCH
Q 007215 417 DLN--LNFQKGRDHAD--DSLHGY----KVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRSFPNCLTY--KTS 485 (612)
Q Consensus 417 ~l~--v~f~g~~~~~~--~ll~~a----Dv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~--~d~ 485 (612)
++. |.|.|..+..+ ++|+.| |+||+||.+|+||++++||||||+|||+|+.||..+ +.++.+|+++ .|+
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~ 624 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQ 624 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCH
Confidence 986 89999876655 899887 699999999999999999999999999999998655 5568899998 799
Q ss_pred HHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHHHHHh
Q 007215 486 EDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 486 ~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
++|+++|.++++ +++.++ ......|+|++++++|++.|.
T Consensus 625 eaLA~AL~~LL~-Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 625 QAIADALLKLVA-DKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIA 669 (1050)
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 999999999995 444333 222346999999999999988
No 7
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=3.2e-34 Score=315.91 Aligned_cols=270 Identities=16% Similarity=0.179 Sum_probs=192.4
Q ss_pred CCccEEEECCCchhHHhhhhHHHhhh-----CC-CEEEEEeCCcHhH------HHHhccc--hh-HHHHH----HHHHHH
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTDK-----FN-HVVGVVHTNYLEY------IKREKNG--AL-QAFFV----KHINNW 310 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~~-----~~-pvv~~~H~~~~~~------~~~~~~~--~~-~~~~~----~~i~~~ 310 (612)
.+|||||+|++.. +..+ ...+.. .+ |+|.++|+....- ....... .+ ...+. ..+.+.
T Consensus 117 ~~pDiiH~h~w~~-~~~~--~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T PRK00654 117 PRPDIVHAHDWHT-GLIP--ALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKA 193 (466)
T ss_pred CCCceEEECCcHH-HHHH--HHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHH
Confidence 5899999998653 2222 122222 25 9999999864210 0000000 00 00000 001111
Q ss_pred HHHhcCCeEEEeChhhhc-c---------------CCCcEEEe-CCCCCCCCCCCc-------------------cchhh
Q 007215 311 VTRAYCDKVLRLSAATQD-L---------------PKSVICNV-HGVNPKFLQIGE-------------------KVATD 354 (612)
Q Consensus 311 ~~~~~ad~vI~~S~~~~~-~---------------~~~~i~vi-nGVd~~~f~~~~-------------------~~~~~ 354 (612)
.. ..||.|+++|+..++ + ..+++.+| ||||.+.|.|.. +...+
T Consensus 194 ~~-~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~ 272 (466)
T PRK00654 194 GL-YYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQ 272 (466)
T ss_pred HH-HhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHH
Confidence 12 258999999996543 2 13467777 999999887642 12345
Q ss_pred hhhccCC-CCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHH-
Q 007215 355 REQGQQA-FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHAD- 430 (612)
Q Consensus 355 ~~~~~~~-~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~- 430 (612)
.++++++ +.++++|+||+.++||++.|++|++++.++ +++|+|+|+|+. .+.+++++++++.++.++.+.++..
T Consensus 273 ~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~ 350 (466)
T PRK00654 273 ERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALA 350 (466)
T ss_pred HHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHH
Confidence 6677764 678999999999999999999999998764 799999999874 3678888988887776644444433
Q ss_pred -HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccC------CcEEec--CCHHHHHHHHHHHHhC--
Q 007215 431 -DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRSF------PNCLTY--KTSEDFVARVKEALAN-- 498 (612)
Q Consensus 431 -~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~------~~g~l~--~d~~~la~aI~~ll~~-- 498 (612)
.+++.||++|+||.+|+||++++|||+||+|+|++++||..+ +.++ .+|+++ +|+++|+++|.++++.
T Consensus 351 ~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~ 430 (466)
T PRK00654 351 HRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYR 430 (466)
T ss_pred HHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999999999554 5556 789988 7999999999998752
Q ss_pred CCCCCCHH----HHhcCCHHHHHHHHHHHHh
Q 007215 499 DPQPLTPE----QRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 499 ~~~~~~~~----~~~~~sWe~~~~~~~~~y~ 525 (612)
++..++++ .++.|||++++++|.++|+
T Consensus 431 ~~~~~~~~~~~~~~~~fsw~~~a~~~~~lY~ 461 (466)
T PRK00654 431 QPPLWRALQRQAMAQDFSWDKSAEEYLELYR 461 (466)
T ss_pred CHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 22222222 2367999999999999998
No 8
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=4.5e-33 Score=301.09 Aligned_cols=352 Identities=14% Similarity=0.114 Sum_probs=239.9
Q ss_pred EEEEeCCCCCCc------CcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhh
Q 007215 143 VAIVTTASLPWM------TGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEER 214 (612)
Q Consensus 143 I~ivt~~~~P~~------~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~ 214 (612)
|+++++..+|.. .||+++.+..++ +|+++ ||+|+|+ +......+. .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~--------------G~~V~v~~~~~~~~~~~---~~-------- 55 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARR--------------GIEVDIFTRATRPSQPP---VV-------- 55 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhC--------------CCEEEEEecccCCCCCC---cc--------
Confidence 678888888877 566899998888 99999 8888883 221000100 00
Q ss_pred hCCCCCceecccC-CCcccc--ccccc----ChHhHh-hhcc--CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEE
Q 007215 215 VGFKADFKISFYP-GKFSKE--RRSII----PAGDTS-QFIP--SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVV 283 (612)
Q Consensus 215 v~~~~~~~i~~~~-~~y~~~--~~si~----~~~~l~-~~l~--~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~ 283 (612)
....++.+...+ ..+... ..... ....+. ..+. ..+||+||++.... .+.. ...++..+ |+|.++
T Consensus 56 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~-~~~~--~~~~~~~~~p~v~t~ 131 (405)
T TIGR03449 56 -EVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLS-GQVG--WLLRDRWGVPLVHTA 131 (405)
T ss_pred -ccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHH-HHHH--HHHHHhcCCCEEEec
Confidence 011122221111 001100 00000 011122 2233 24799999987432 2222 33445556 999999
Q ss_pred eCCcHhHHHHhc-cchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCccchhh
Q 007215 284 HTNYLEYIKREK-NGALQAFFVKHINNWVTRAYCDKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEKVATD 354 (612)
Q Consensus 284 H~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~~~~~ 354 (612)
|+.......... .........+.+++.+.+ .+|.++++|+...+ ...+++.++ ||+|.+.|.+.+....+
T Consensus 132 h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~ 210 (405)
T TIGR03449 132 HTLAAVKNAALADGDTPEPEARRIGEQQLVD-NADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATER 210 (405)
T ss_pred cchHHHHHHhccCCCCCchHHHHHHHHHHHH-hcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHH
Confidence 986432111000 000111222334444443 68999999996433 233567777 89998887765555556
Q ss_pred hhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC--eEEEEEecC-----CCHHHHHHHHHHcCCc--eEEecC
Q 007215 355 REQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG--FKLDVFGNG-----EDAYEVQSAAKRLDLN--LNFQKG 425 (612)
Q Consensus 355 ~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~--~~LvIvG~g-----~~~~~l~~~~~~l~l~--v~f~g~ 425 (612)
.++++++++++++|+||+.+.||++.+++|++++.++.++ ++|+|+|++ +..+.++++++++++. |.|+|.
T Consensus 211 ~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~ 290 (405)
T TIGR03449 211 ARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPP 290 (405)
T ss_pred HhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCC
Confidence 6677777788999999999999999999999999877776 999999963 3457788889998875 999999
Q ss_pred CCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEec--CCHHHHHHHHHHHHhCCC
Q 007215 426 RDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRSFPNCLTY--KTSEDFVARVKEALANDP 500 (612)
Q Consensus 426 ~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~ 500 (612)
+++.+ ++++.||++|+||..|+||++++|||+||+|||+++.|+..+ +.++.+|+++ +|+++++++|.+++++ +
T Consensus 291 ~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~-~ 369 (405)
T TIGR03449 291 RPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDD-P 369 (405)
T ss_pred CCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhC-H
Confidence 87666 999999999999999999999999999999999999998554 5567889988 6999999999999954 4
Q ss_pred CCCC------HHHHhcCCHHHHHHHHHHHHh
Q 007215 501 QPLT------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 501 ~~~~------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+..+ ....+.|+|+.++++|.+.|.
T Consensus 370 ~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 370 RTRIRMGAAAVEHAAGFSWAATADGLLSSYR 400 (405)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3222 222356999999999999998
No 9
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.2e-33 Score=295.88 Aligned_cols=347 Identities=15% Similarity=0.136 Sum_probs=239.7
Q ss_pred ceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 141 RNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 141 ~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
|||++++ .|..|| +.+....++ +|++. ||+|+|+.. ..+...... . ..+. ..
T Consensus 1 mki~~~~---~p~~gG-~~~~~~~la~~L~~~--------------G~~v~v~~~---~~~~~~~~~----~-~~~~-~~ 53 (371)
T cd04962 1 MKIGIVC---YPTYGG-SGVVATELGKALARR--------------GHEVHFITS---SRPFRLDEY----S-PNIF-FH 53 (371)
T ss_pred CceeEEE---EeCCCC-ccchHHHHHHHHHhc--------------CCceEEEec---CCCcchhhh----c-cCeE-EE
Confidence 5899997 365566 788888888 99999 899888432 111110000 0 0000 00
Q ss_pred CceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhh-hHHHhhhCC-CEEEEEeCCcHhHHHHhccc
Q 007215 220 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHH-GKRWTDKFN-HVVGVVHTNYLEYIKREKNG 297 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~-~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~ 297 (612)
...+..++.. ............+.+.+.+.+||+||++.+....+... .....++.+ |++.++|......... .
T Consensus 54 ~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~---~ 129 (371)
T cd04962 54 EVEVPQYPLF-QYPPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQ---D 129 (371)
T ss_pred Eecccccchh-hcchhHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccc---c
Confidence 0111111110 00001111234566677788999999986542211110 011222225 8999999753322111 0
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----c-CCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEe
Q 007215 298 ALQAFFVKHINNWVTRAYCDKVLRLSAATQD-----L-PKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLG 370 (612)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~-~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vG 370 (612)
.....+.++..+ .+|.++++|+.+++ + ..+++.++ ||+|...+.+......+.+++.++++++++|+|
T Consensus 130 ----~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 204 (371)
T cd04962 130 ----PSFQPATRFSIE-KSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHIS 204 (371)
T ss_pred ----ccchHHHHHHHh-hCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEec
Confidence 011222333333 58999999997655 2 24567777 899987766554444455666777788999999
Q ss_pred ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcc
Q 007215 371 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVL 448 (612)
Q Consensus 371 rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~f 448 (612)
|+.+.||++.+++|++++.++ .+++++++|.|++.+.++++++++++. +.|+|..++..++++.||++|+||..|+|
T Consensus 205 ~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~ 283 (371)
T cd04962 205 NFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESF 283 (371)
T ss_pred ccccccCHHHHHHHHHHHHhc-CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCC
Confidence 999999999999999998766 568999999999999999999988875 99999988888999999999999999999
Q ss_pred hHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHH
Q 007215 449 CTATAEALAMGKFVICADHPSNEF-FRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQ 518 (612)
Q Consensus 449 gl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~ 518 (612)
|++++|||+||+|||+|+.|+..+ +.++.+|+++ +|+++++++|.++++ ++..+. ....+.|+|+.+++
T Consensus 284 ~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~fs~~~~~~ 362 (371)
T cd04962 284 GLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLE-DDELWQEFSRAARNRAAERFDSERIVP 362 (371)
T ss_pred ccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999998554 5557899988 699999999999995 443322 22356799999999
Q ss_pred HHHHHHh
Q 007215 519 RFIEYSE 525 (612)
Q Consensus 519 ~~~~~y~ 525 (612)
+|.+.|+
T Consensus 363 ~~~~~y~ 369 (371)
T cd04962 363 QYEALYR 369 (371)
T ss_pred HHHHHHH
Confidence 9999997
No 10
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=9.3e-33 Score=312.48 Aligned_cols=378 Identities=14% Similarity=0.156 Sum_probs=243.5
Q ss_pred CCCceEEEEeCCCCCCc-CcccccHHHHHH-HhhhcCCccEEEEecccCCCC-c-e--------EEcCCcccCCchhHHH
Q 007215 138 DKKRNVAIVTTASLPWM-TGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSD-Q-E--------LVYPNVTFCSPEEQEN 205 (612)
Q Consensus 138 ~~~~kI~ivt~~~~P~~-~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~-~-V--------~V~p~~~f~~~~~~~~ 205 (612)
.+++||++|+.+..|.. +||....+.-+. +|++. +++|.+++|....-. + + .+.. .+..+.....
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~--~~~g~~~~~~ 555 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKYDCMQYDQIRNLKVLDVVVES--YFDGNLFKNK 555 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCCcccChhhhhcccccceEEEE--eecCceeEEE
Confidence 46799999999999985 787777777777 88887 345555555443211 0 0 0000 0000000000
Q ss_pred HHHHHHHhhhCCCCCceecccC----------C-Cc---ccccccccChHhHhhhcc--CCCccEEEECCCchhHHhhhh
Q 007215 206 YMRNWLEERVGFKADFKISFYP----------G-KF---SKERRSIIPAGDTSQFIP--SKDADIAILEEPEHLNWYHHG 269 (612)
Q Consensus 206 ~~~~w~~~~v~~~~~~~i~~~~----------~-~y---~~~~~si~~~~~l~~~l~--~~~pDVVh~~~p~~l~~~~~~ 269 (612)
+ | ....+++.+.+.. . -| ....|+.+.......++. ..+|||||+|++..-....
T Consensus 556 v---~----~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~p-- 626 (977)
T PLN02939 556 I---W----TGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAP-- 626 (977)
T ss_pred E---E----EEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHH--
Confidence 0 0 0001122221111 0 01 122233333333444443 3689999999987432211
Q ss_pred HHHh----h-hCC-CEEEEEeCCcHhHH---HHhccchhH-H------HHH----HHHHHHHH-HhcCCeEEEeChhhhc
Q 007215 270 KRWT----D-KFN-HVVGVVHTNYLEYI---KREKNGALQ-A------FFV----KHINNWVT-RAYCDKVLRLSAATQD 328 (612)
Q Consensus 270 ~~~~----~-~~~-pvv~~~H~~~~~~~---~~~~~~~~~-~------~~~----~~i~~~~~-~~~ad~vI~~S~~~~~ 328 (612)
..+. . ..+ ++|.++|+....-. .......+. . .+. ..++-+.. -.+||.|+++|+..++
T Consensus 627 ll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~ 706 (977)
T PLN02939 627 LYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQ 706 (977)
T ss_pred HHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHH
Confidence 1111 1 123 89999998742110 000000000 0 110 11111111 1258999999996443
Q ss_pred ---------------cCCCcEEEe-CCCCCCCCCCCc-------------------cchhhhhhccCC---CCcEEEEEe
Q 007215 329 ---------------LPKSVICNV-HGVNPKFLQIGE-------------------KVATDREQGQQA---FSKGAYFLG 370 (612)
Q Consensus 329 ---------------~~~~~i~vi-nGVd~~~f~~~~-------------------~~~~~~~~~~~~---~~~~il~vG 370 (612)
....++.+| ||||++.|.|.. +...++++|++. +.++++|+|
T Consensus 707 EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VG 786 (977)
T PLN02939 707 EVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCIT 786 (977)
T ss_pred HHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEee
Confidence 123566666 999998887653 234567788763 468999999
Q ss_pred ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH---HHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEecc
Q 007215 371 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA---YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPS 443 (612)
Q Consensus 371 rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~---~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS 443 (612)
|+.++||++.+++|+..+.+ ++++|+|+|+|++. +.++++++++++. |.|+|.+++.. .+++.||+||+||
T Consensus 787 RL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPS 864 (977)
T PLN02939 787 RLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPS 864 (977)
T ss_pred cCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECC
Confidence 99999999999999988865 47899999999763 6788888888765 99999988775 7999999999999
Q ss_pred CCCcchHHHHHHHHcCCcEEeeCCCCccc-ccc---------CCcEEec--CCHHHHHHHHHHHHh---CCCCCCCHHH-
Q 007215 444 ISDVLCTATAEALAMGKFVICADHPSNEF-FRS---------FPNCLTY--KTSEDFVARVKEALA---NDPQPLTPEQ- 507 (612)
Q Consensus 444 ~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~---------~~~g~l~--~d~~~la~aI~~ll~---~~~~~~~~~~- 507 (612)
.+|+||++++|||+||+|+|++++||..+ |.+ +.||+++ .|+++|+++|.+++. ++++.++.+.
T Consensus 865 r~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~ 944 (977)
T PLN02939 865 MFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQ 944 (977)
T ss_pred CccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999999999999999999544 433 4689988 899999999999874 3454444333
Q ss_pred ---HhcCCHHHHHHHHHHHHhcccccc
Q 007215 508 ---RYNLSWEAATQRFIEYSELNRILN 531 (612)
Q Consensus 508 ---~~~~sWe~~~~~~~~~y~~~~~~~ 531 (612)
...|+|+.++++|.++|+ +++.
T Consensus 945 ~am~~dFSWe~~A~qYeeLY~--~ll~ 969 (977)
T PLN02939 945 KDMNIDFSWDSSASQYEELYQ--RAVA 969 (977)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--HHHH
Confidence 357999999999999999 6543
No 11
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.4e-32 Score=290.09 Aligned_cols=342 Identities=13% Similarity=0.095 Sum_probs=231.9
Q ss_pred ceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 141 RNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 141 ~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
+||+.+...+- .||+++.+..++ +|.+. |+++.|+.- ..... + .+.+.+. ...
T Consensus 2 ~~il~ii~~~~---~GG~e~~~~~l~~~l~~~--------------~~~~~v~~~---~~~~~---~-~~~~~~~--~i~ 55 (374)
T TIGR03088 2 PLIVHVVYRFD---VGGLENGLVNLINHLPAD--------------RYRHAVVAL---TEVSA---F-RKRIQRP--DVA 55 (374)
T ss_pred ceEEEEeCCCC---CCcHHHHHHHHHhhcccc--------------ccceEEEEc---CCCCh---h-HHHHHhc--Cce
Confidence 68999988772 455888888888 88888 777666311 01111 1 1111111 111
Q ss_pred CceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CE-EEEEeCCcHhHHHHhccc
Q 007215 220 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HV-VGVVHTNYLEYIKREKNG 297 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pv-v~~~H~~~~~~~~~~~~~ 297 (612)
...+...+ .........+.+.+.+.+|||||++++..+... ..+...+ |. +.+.|... .... ..
T Consensus 56 ~~~~~~~~------~~~~~~~~~l~~~l~~~~~Divh~~~~~~~~~~----~~~~~~~~~~~i~~~h~~~--~~~~-~~- 121 (374)
T TIGR03088 56 FYALHKQP------GKDVAVYPQLYRLLRQLRPDIVHTRNLAALEAQ----LPAALAGVPARIHGEHGRD--VFDL-DG- 121 (374)
T ss_pred EEEeCCCC------CCChHHHHHHHHHHHHhCCCEEEEcchhHHHHH----HHHHhcCCCeEEEeecCcc--cccc-hh-
Confidence 11111100 111122345777778899999999876433211 2223334 43 22233211 1000 00
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCccc--hhhhhhccCCCCcEEE
Q 007215 298 ALQAFFVKHINNWVTRAYCDKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEKV--ATDREQGQQAFSKGAY 367 (612)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~~--~~~~~~~~~~~~~~il 367 (612)
..+....+.++..+ .+|.++++|+.+++ .+.+++.++ ||+|++.|.+.... ..........++++++
T Consensus 122 --~~~~~~~~~~~~~~-~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (374)
T TIGR03088 122 --SNWKYRWLRRLYRP-LIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVG 198 (374)
T ss_pred --hHHHHHHHHHHHHh-cCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEE
Confidence 11222334444333 57999999997655 234667777 89998877654211 1222233345567999
Q ss_pred EEeccCCccCHHHHHHHHHHhhccCC----CeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEe
Q 007215 368 FLGKMVWAKGYRELIDLLAKHKNDLD----GFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFIN 441 (612)
Q Consensus 368 ~vGrl~~~Kg~~~Li~A~~~l~~~~~----~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~ 441 (612)
|+||+.+.||++.+++|++++.++.+ +++|+++|.|+..+++++.++++++. +.|.|...+..++++.||++|+
T Consensus 199 ~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ 278 (374)
T TIGR03088 199 TVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVL 278 (374)
T ss_pred EEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEe
Confidence 99999999999999999999876654 78999999999888999999999886 7788988888899999999999
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeCCCCccccc-cCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCC
Q 007215 442 PSISDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLS 512 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~-~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~s 512 (612)
||..|+||++++||||||+|||+|+.|+..+++ ++.+|+++ +|+++++++|.++++++..+.. +...+.|+
T Consensus 279 pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs 358 (374)
T TIGR03088 279 PSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFS 358 (374)
T ss_pred ccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999865554 56788887 7999999999999954332211 33457899
Q ss_pred HHHHHHHHHHHHh
Q 007215 513 WEAATQRFIEYSE 525 (612)
Q Consensus 513 We~~~~~~~~~y~ 525 (612)
|+.++++|.+.|+
T Consensus 359 ~~~~~~~~~~~y~ 371 (374)
T TIGR03088 359 INAMVAAYAGLYD 371 (374)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999998
No 12
>PLN02316 synthase/transferase
Probab=100.00 E-value=5e-32 Score=311.95 Aligned_cols=256 Identities=14% Similarity=0.109 Sum_probs=191.3
Q ss_pred CCccEEEECCCchhHHhhhhHHHhh-----hCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeC
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTD-----KFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLS 323 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~-----~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S 323 (612)
.+|||||+|++.. ++.. ...+.. ..+ |+|.++|... +.. .. +... ..+||.|+++|
T Consensus 708 ~~PDIIHaHDW~t-alva-~llk~~~~~~~~~~~p~V~TiHnl~--~~~--------n~----lk~~--l~~AD~ViTVS 769 (1036)
T PLN02316 708 FHPDIIHCHDWSS-APVA-WLFKDHYAHYGLSKARVVFTIHNLE--FGA--------NH----IGKA--MAYADKATTVS 769 (1036)
T ss_pred CCCCEEEECCChH-HHHH-HHHHHhhhhhccCCCCEEEEeCCcc--cch--------hH----HHHH--HHHCCEEEeCC
Confidence 5899999998743 2222 111111 123 8999999753 211 01 1111 12689999999
Q ss_pred hhhhc-------cC--CCcEEEe-CCCCCCCCCCCc--------------------cchhhhhhccC-CCCcEEEEEecc
Q 007215 324 AATQD-------LP--KSVICNV-HGVNPKFLQIGE--------------------KVATDREQGQQ-AFSKGAYFLGKM 372 (612)
Q Consensus 324 ~~~~~-------~~--~~~i~vi-nGVd~~~f~~~~--------------------~~~~~~~~~~~-~~~~~il~vGrl 372 (612)
+..++ +. ..++.+| ||||++.|.|.. +..++.++|++ ++.++++|+||+
T Consensus 770 ~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL 849 (1036)
T PLN02316 770 PTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRL 849 (1036)
T ss_pred HHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEecc
Confidence 97543 12 2577777 999988776532 12245667776 367899999999
Q ss_pred CCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH---HHHHHHHHHcCC----ceEEecCCCCHH--HHHhccceEEecc
Q 007215 373 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA---YEVQSAAKRLDL----NLNFQKGRDHAD--DSLHGYKVFINPS 443 (612)
Q Consensus 373 ~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~---~~l~~~~~~l~l----~v~f~g~~~~~~--~ll~~aDv~V~PS 443 (612)
.++||++.|++|+.++.+ .+++|+|+|+|++. ..++++++++++ .|.|.+..++.. .+++.||+||+||
T Consensus 850 ~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS 927 (1036)
T PLN02316 850 THQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPS 927 (1036)
T ss_pred ccccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCC
Confidence 999999999999999875 37899999999874 678888887765 388888877654 7999999999999
Q ss_pred CCCcchHHHHHHHHcCCcEEeeCCCCccc-cccC-------------CcEEec--CCHHHHHHHHHHHHhCCCCCC---C
Q 007215 444 ISDVLCTATAEALAMGKFVICADHPSNEF-FRSF-------------PNCLTY--KTSEDFVARVKEALANDPQPL---T 504 (612)
Q Consensus 444 ~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~-------------~~g~l~--~d~~~la~aI~~ll~~~~~~~---~ 504 (612)
.+|+||++.+|||+||+|+|++++||..+ |.++ .+|+++ .|+++|+.+|.+++....... .
T Consensus 928 ~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~ 1007 (1036)
T PLN02316 928 IFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFN 1007 (1036)
T ss_pred cccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999654 4442 589998 799999999999996432211 1
Q ss_pred ----HHHHhcCCHHHHHHHHHHHHh
Q 007215 505 ----PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 505 ----~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+.....|||+.++++|+++|+
T Consensus 1008 ~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 1008 SLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 223467999999999999998
No 13
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.3e-32 Score=304.07 Aligned_cols=271 Identities=16% Similarity=0.165 Sum_probs=195.3
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhC---C-CEEEEEeCCcHhH---HHHhccchhH-HHH-HH--------HHHHHH
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKF---N-HVVGVVHTNYLEY---IKREKNGALQ-AFF-VK--------HINNWV 311 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~---~-pvv~~~H~~~~~~---~~~~~~~~~~-~~~-~~--------~i~~~~ 311 (612)
..+|||||+|++... ... ...+..+ + |+|.++|+....- ........+. ..+ .. .+.+..
T Consensus 126 ~~~~DiiH~hdw~~~-~~~--~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 202 (473)
T TIGR02095 126 GWQPDVVHAHDWHTA-LVP--ALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGG 202 (473)
T ss_pred CCCCCEEEECCcHHH-HHH--HHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHH
Confidence 368999999986532 222 1122211 3 8999999864210 0000000000 000 00 011222
Q ss_pred HHhcCCeEEEeChhhhc-c---------------CCCcEEEe-CCCCCCCCCCCcc-------------------chhhh
Q 007215 312 TRAYCDKVLRLSAATQD-L---------------PKSVICNV-HGVNPKFLQIGEK-------------------VATDR 355 (612)
Q Consensus 312 ~~~~ad~vI~~S~~~~~-~---------------~~~~i~vi-nGVd~~~f~~~~~-------------------~~~~~ 355 (612)
.+ +||.++++|+..++ + .+.++.+| ||||.+.|.|... ...++
T Consensus 203 ~~-~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~ 281 (473)
T TIGR02095 203 IV-YADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQE 281 (473)
T ss_pred HH-hCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHH
Confidence 22 58999999996543 2 12467777 9999998876421 23456
Q ss_pred hhccCC--CCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCC--CHHHHHHHHHHcCCceEEecCCCCHH-
Q 007215 356 EQGQQA--FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGE--DAYEVQSAAKRLDLNLNFQKGRDHAD- 430 (612)
Q Consensus 356 ~~~~~~--~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~--~~~~l~~~~~~l~l~v~f~g~~~~~~- 430 (612)
+++++. ++++++|+||+.++||++.+++|++++.++ +++|+|+|+|+ ..+++++++.+++.++.|++..++..
T Consensus 282 ~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 282 ELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred HcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 677764 678999999999999999999999999764 59999999995 34678888888876688888777665
Q ss_pred -HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCcc-ccccC------CcEEec--CCHHHHHHHHHHHHh---
Q 007215 431 -DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE-FFRSF------PNCLTY--KTSEDFVARVKEALA--- 497 (612)
Q Consensus 431 -~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~-~i~~~------~~g~l~--~d~~~la~aI~~ll~--- 497 (612)
.+++.||++++||.+|+||++++|||+||+|||+++.||.. .+.++ .+|+++ .|+++++++|.+++.
T Consensus 360 ~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~ 439 (473)
T TIGR02095 360 HLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYR 439 (473)
T ss_pred HHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999954 45555 789988 799999999999885
Q ss_pred CCCCCCCHHH----HhcCCHHHHHHHHHHHHh
Q 007215 498 NDPQPLTPEQ----RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 498 ~~~~~~~~~~----~~~~sWe~~~~~~~~~y~ 525 (612)
++++.++++. ++.|||++++++|.++|+
T Consensus 440 ~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 440 QDPSLWEALQKNAMSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred cCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 1444444333 356999999999999998
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1e-31 Score=288.22 Aligned_cols=269 Identities=16% Similarity=0.168 Sum_probs=195.6
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhh
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQ 327 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~ 327 (612)
..++|+||++.+... ... ....+..+ |++.+.|+..+..............+...+++...+ .+|.++++|+.++
T Consensus 81 ~~~~divh~~~~~~~-~~~--~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~vi~~S~~~~ 156 (388)
T TIGR02149 81 PVDADVVHSHTWYTF-LAG--HLAKKLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIE-AADRVIAVSGGMR 156 (388)
T ss_pred CCCCCeEeecchhhh-hHH--HHHHHhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHh-hCCEEEEccHHHH
Confidence 457999999875532 222 22333446 999999986532110000000001122344454444 6899999999765
Q ss_pred c-----c---CCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEE
Q 007215 328 D-----L---PKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLD 398 (612)
Q Consensus 328 ~-----~---~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~Lv 398 (612)
+ + ..+++.++ ||+|++.+.+......+.+++.++++++++|+||+.+.||++.|++|++++. ++++++
T Consensus 157 ~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~ 233 (388)
T TIGR02149 157 EDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVV 233 (388)
T ss_pred HHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEE
Confidence 4 2 23567777 8999988877655556677777777889999999999999999999999885 367899
Q ss_pred EEecCCCH----HHHHHHHHHcCC---ceEEec-CCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 399 VFGNGEDA----YEVQSAAKRLDL---NLNFQK-GRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 399 IvG~g~~~----~~l~~~~~~l~l---~v~f~g-~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
++|+|++. +.+++.+.+++. .+.|++ .++..+ ++++.||++|+||.+|+||++++||||||+|||+|+.|
T Consensus 234 i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~ 313 (388)
T TIGR02149 234 LCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG 313 (388)
T ss_pred EEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC
Confidence 98887664 445566666655 266655 455544 99999999999999999999999999999999999999
Q ss_pred Ccccc-ccCCcEEec--CCH------HHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHh
Q 007215 469 SNEFF-RSFPNCLTY--KTS------EDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 469 g~~~i-~~~~~g~l~--~d~------~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+..++ .++.+|+++ +|+ ++++++|.+++++ ++.++ +...+.|+|+.++++|.+.|+
T Consensus 314 ~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 314 GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD-PELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 86555 456789988 677 8999999999954 43322 233467999999999999998
No 15
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-31 Score=281.40 Aligned_cols=344 Identities=22% Similarity=0.256 Sum_probs=240.6
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
||++|+..|+|..+| +.+.+..++ +|++. ||+|+++ +.. . ...... .......
T Consensus 1 kIl~i~~~~~p~~~G-~~~~~~~l~~~L~~~--------------g~~v~~~~~~~---~-~~~~~~------~~~~~~~ 55 (364)
T cd03814 1 RIAIVTDTFLPQVNG-VVRTLQRLVEHLRAR--------------GHEVLVIAPGP---F-RESEGP------ARVVPVP 55 (364)
T ss_pred CeEEEecccCccccc-eehHHHHHHHHHHHC--------------CCEEEEEeCCc---h-hhccCC------CCceeec
Confidence 699999999998867 677777777 99998 8888884 221 0 000000 0000111
Q ss_pred CceecccCCCccccccc-ccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccc
Q 007215 220 DFKISFYPGKFSKERRS-IIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG 297 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~~s-i~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~ 297 (612)
......+.. .+. ......+.+.+.+.+||+||++.+..+.+.. ..+.++.+ |++..+|+.+..+.......
T Consensus 56 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 128 (364)
T cd03814 56 SVPLPGYPE-----IRLALPPRRRVRRLLDAFAPDVVHIATPGPLGLAA--LRAARRLGIPVVTSYHTDFPEYLRYYGLG 128 (364)
T ss_pred ccccCcccc-----eEecccchhhHHHHHHhcCCCEEEEeccchhhHHH--HHHHHHcCCCEEEEEecChHHHhhhcccc
Confidence 111111111 111 1123445566667899999998877665554 45666667 99999999887665332221
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEEeChhhhc----cCCCcEEEe-CCCCCCCCCCCccc-hhhhhhccCCCCcEEEEEec
Q 007215 298 ALQAFFVKHINNWVTRAYCDKVLRLSAATQD----LPKSVICNV-HGVNPKFLQIGEKV-ATDREQGQQAFSKGAYFLGK 371 (612)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~----~~~~~i~vi-nGVd~~~f~~~~~~-~~~~~~~~~~~~~~il~vGr 371 (612)
........+.++..+ .+|.+++.|+...+ ....++.++ +|+|.+.+.+.... ....+++ ...++.++|+|+
T Consensus 129 -~~~~~~~~~~~~~~~-~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~ 205 (364)
T cd03814 129 -PLSWLAWAYLRWFHN-RADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG-PPDRPVLLYVGR 205 (364)
T ss_pred -hHhHhhHHHHHHHHH-hCCEEEeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhC-CCCCeEEEEEec
Confidence 122222344444444 58999999997765 223556666 79998877655332 2233333 344678999999
Q ss_pred cCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCCCcch
Q 007215 372 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLC 449 (612)
Q Consensus 372 l~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fg 449 (612)
+.+.||++.++++++++.++ ++++++++|.+++.+.++ ....++.|+|..+..+ ++++.||++++||..|+||
T Consensus 206 ~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~ 280 (364)
T cd03814 206 LAPEKNLEALLDADLPLRRR-PPVRLVIVGDGPARARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFG 280 (364)
T ss_pred cccccCHHHHHHHHHHhhhc-CCceEEEEeCCchHHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCC
Confidence 99999999999999999887 899999999998876655 2333599999876555 9999999999999999999
Q ss_pred HHHHHHHHcCCcEEeeCCCCccccc-cCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-----HHHHhcCCHHHHHHHHH
Q 007215 450 TATAEALAMGKFVICADHPSNEFFR-SFPNCLTY--KTSEDFVARVKEALANDPQPLT-----PEQRYNLSWEAATQRFI 521 (612)
Q Consensus 450 l~llEAMA~G~PVVas~~gg~~~i~-~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-----~~~~~~~sWe~~~~~~~ 521 (612)
++++||||||+|||+++.++..++. ++.+|+++ .|.++++++|.++++++..+.+ ......++|+.+++++.
T Consensus 281 ~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (364)
T cd03814 281 LVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLL 360 (364)
T ss_pred cHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 9999999999999999999865544 45888887 7889999999999954433221 12224799999999999
Q ss_pred HHHh
Q 007215 522 EYSE 525 (612)
Q Consensus 522 ~~y~ 525 (612)
+.|+
T Consensus 361 ~~~~ 364 (364)
T cd03814 361 EAYR 364 (364)
T ss_pred HhhC
Confidence 9884
No 16
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=5e-32 Score=296.41 Aligned_cols=277 Identities=14% Similarity=0.161 Sum_probs=189.5
Q ss_pred hHhhhccC--CCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhcc-c----hhHH--HHHH--HHHH
Q 007215 242 DTSQFIPS--KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKN-G----ALQA--FFVK--HINN 309 (612)
Q Consensus 242 ~l~~~l~~--~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~-~----~~~~--~~~~--~i~~ 309 (612)
.+.+.+.+ .+|||||+|.+. .++.. ..+++..+ |+|.+.|+........... + .+.. .+.. ..++
T Consensus 103 ~l~~~~~~~~~~~DvIH~h~~~-~~~~~--~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (439)
T TIGR02472 103 NLLQHLRQQGHLPDLIHAHYAD-AGYVG--ARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEE 179 (439)
T ss_pred HHHHHHHHcCCCCCEEEEcchh-HHHHH--HHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHH
Confidence 34455543 379999999753 23333 34555566 9999999753321110000 0 0000 0011 1233
Q ss_pred HHHHhcCCeEEEeChhh-hc-------cCCCcEEEe-CCCCCCCCCCCccch-------hhhhhccCCCCcEEEEEeccC
Q 007215 310 WVTRAYCDKVLRLSAAT-QD-------LPKSVICNV-HGVNPKFLQIGEKVA-------TDREQGQQAFSKGAYFLGKMV 373 (612)
Q Consensus 310 ~~~~~~ad~vI~~S~~~-~~-------~~~~~i~vi-nGVd~~~f~~~~~~~-------~~~~~~~~~~~~~il~vGrl~ 373 (612)
+..+ .+|.||++|... .+ ++++++.+| ||||++.|.+..... ...+++..+++++++|+||+.
T Consensus 180 ~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~ 258 (439)
T TIGR02472 180 ETLA-HASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPD 258 (439)
T ss_pred HHHH-hCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCc
Confidence 4344 589999999642 22 355778888 899998886642211 112344555678999999999
Q ss_pred CccCHHHHHHHHHHhhc--cCCCeEEEEEecCCCHH-----------HHHHHHHHcCCc--eEEecCCCCHH--HHHhcc
Q 007215 374 WAKGYRELIDLLAKHKN--DLDGFKLDVFGNGEDAY-----------EVQSAAKRLDLN--LNFQKGRDHAD--DSLHGY 436 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~--~~~~~~LvIvG~g~~~~-----------~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~a 436 (612)
+.||++.||+|++++.. ..+++. +++|+|++.+ .+.++++++++. |.|.|.++..+ ++|+.|
T Consensus 259 ~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a 337 (439)
T TIGR02472 259 RRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLA 337 (439)
T ss_pred ccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHH
Confidence 99999999999986432 223332 3678776532 234456777775 88999876554 888877
Q ss_pred ----ceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccc-cCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-----
Q 007215 437 ----KVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCLTY--KTSEDFVARVKEALANDPQPLT----- 504 (612)
Q Consensus 437 ----Dv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~-~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~----- 504 (612)
|+||+||.+|+||++++||||||+|||+|+.||..+++ ++.+|+++ +|+++++++|.+++++ +..++
T Consensus 338 ~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~ 416 (439)
T TIGR02472 338 ARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSD-SSQWQLWSRN 416 (439)
T ss_pred hhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence 99999999999999999999999999999999866554 56889987 8999999999999954 43323
Q ss_pred --HHHHhcCCHHHHHHHHHHHH
Q 007215 505 --PEQRYNLSWEAATQRFIEYS 524 (612)
Q Consensus 505 --~~~~~~~sWe~~~~~~~~~y 524 (612)
+...+.|+|+.++++|.+..
T Consensus 417 a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 417 GIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 23346799999999998864
No 17
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=2.5e-31 Score=278.45 Aligned_cols=319 Identities=13% Similarity=0.084 Sum_probs=225.2
Q ss_pred ceEEEEeCCCCC---CcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhh
Q 007215 141 RNVAIVTTASLP---WMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERV 215 (612)
Q Consensus 141 ~kI~ivt~~~~P---~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v 215 (612)
|||++|++.+.| ...||+.+.+..++ +|.+. ||+|.|+ +... ........+
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~--------------g~~V~v~~~~~~-~~~~~~~~~--------- 56 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVAR--------------GHEVTLFASGDS-KTAAPLVPV--------- 56 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhc--------------CceEEEEecCCC-Ccccceeec---------
Confidence 699999998743 33444888888888 89998 8888873 2210 000000000
Q ss_pred CCCCCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHh
Q 007215 216 GFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKRE 294 (612)
Q Consensus 216 ~~~~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~ 294 (612)
... ...... . ............+.+.+.+.+||+||++.+....+ +.+..+ |++.+.|+........
T Consensus 57 ~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~------~~~~~~~~~v~~~h~~~~~~~~~- 124 (335)
T cd03802 57 VPE-PLRLDA-P---GRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP------FARPLPVPVVTTLHGPPDPELLK- 124 (335)
T ss_pred cCC-Cccccc-c---hhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh------hhcccCCCEEEEecCCCCcccch-
Confidence 000 000000 0 00011112234456677788999999987765433 233445 9999999876433211
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhccCC--CcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEec
Q 007215 295 KNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPK--SVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGK 371 (612)
Q Consensus 295 ~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~~~~--~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGr 371 (612)
........+.++++|+...+... .++.++ ||+|++.|.+.. ..+..++|+||
T Consensus 125 --------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~vi~ngvd~~~~~~~~-----------~~~~~i~~~Gr 179 (335)
T cd03802 125 --------------LYYAARPDVPFVSISDAQRRPWPPLPWVATVHNGIDLDDYPFRG-----------PKGDYLLFLGR 179 (335)
T ss_pred --------------HHHhhCcCCeEEEecHHHHhhcccccccEEecCCcChhhCCCCC-----------CCCCEEEEEEe
Confidence 11112246889999998766322 466677 899988876521 22458999999
Q ss_pred cCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHc---CCceEEecCCCCHH--HHHhccceEEeccCC-
Q 007215 372 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRL---DLNLNFQKGRDHAD--DSLHGYKVFINPSIS- 445 (612)
Q Consensus 372 l~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l---~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~- 445 (612)
+.+.||++.+++++++. +++|+++|.+++.+.+.....+. +..+.|+|.+++.+ ++++.+|++|+||.+
T Consensus 180 ~~~~Kg~~~li~~~~~~-----~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~ 254 (335)
T cd03802 180 ISPEKGPHLAIRAARRA-----GIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWE 254 (335)
T ss_pred eccccCHHHHHHHHHhc-----CCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccc
Confidence 99999999999998653 68999999998877766665554 34499999998876 899999999999985
Q ss_pred CcchHHHHHHHHcCCcEEeeCCCCcccccc-CCcEEecCCHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHHHHHHHHH
Q 007215 446 DVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLTYKTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYS 524 (612)
Q Consensus 446 E~fgl~llEAMA~G~PVVas~~gg~~~i~~-~~~g~l~~d~~~la~aI~~ll~~~~~~~~~~~~~~~sWe~~~~~~~~~y 524 (612)
|+||++++||||||+|||+++.|+..+++. +.+|+++.++++++++|.++++.+....++...++|+|+.++++|.+.|
T Consensus 255 E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 255 EPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDSVEELAAAVARADRLDRAACRRRAERRFSAARMVDDYLALY 334 (335)
T ss_pred CCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCCHHHHHHHHHHHhccHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999998665554 6699999779999999999975554444566678899999999999998
Q ss_pred h
Q 007215 525 E 525 (612)
Q Consensus 525 ~ 525 (612)
+
T Consensus 335 ~ 335 (335)
T cd03802 335 R 335 (335)
T ss_pred C
Confidence 5
No 18
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=3.7e-31 Score=283.24 Aligned_cols=262 Identities=14% Similarity=0.095 Sum_probs=190.8
Q ss_pred ccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChh
Q 007215 247 IPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAA 325 (612)
Q Consensus 247 l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~ 325 (612)
+...+|||||+|++....+.. +.+..+ |++.++|+....+. ....+.+.+++. .+|.+++.|..
T Consensus 81 ~~~~~~Dvv~~h~~~~~~~~~----~~~~~~~~~i~~~H~~~~~~~---------~~~~~~~~~~~~--~~d~~i~~~~~ 145 (372)
T cd03792 81 LLDLDADVVVIHDPQPLALPL----FKKKRGRPWIWRCHIDLSSPN---------RRVWDFLQPYIE--DYDAAVFHLPE 145 (372)
T ss_pred cccCCCCEEEECCCCchhHHH----hhhcCCCeEEEEeeeecCCCc---------HHHHHHHHHHHH--hCCEEeecHHH
Confidence 346789999999887433222 223325 89999998753321 112222333322 36788877743
Q ss_pred -hhc-cCCCcEEEe-CCCCCCC-CC-C---CccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEE
Q 007215 326 -TQD-LPKSVICNV-HGVNPKF-LQ-I---GEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKL 397 (612)
Q Consensus 326 -~~~-~~~~~i~vi-nGVd~~~-f~-~---~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~L 397 (612)
... +..+++ ++ ||||+.. +. . ......+.++++++++++++++||+.+.||++.+++|++.+.+..++++|
T Consensus 146 ~~~~~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l 224 (372)
T cd03792 146 YVPPQVPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQL 224 (372)
T ss_pred hcCCCCCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEE
Confidence 333 444455 55 8999652 11 1 12233456677778889999999999999999999999999887789999
Q ss_pred EEEecCCCH-----HHHHHHHHHcCCc--eEEecCC--CCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 398 DVFGNGEDA-----YEVQSAAKRLDLN--LNFQKGR--DHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 398 vIvG~g~~~-----~~l~~~~~~l~l~--v~f~g~~--~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+++|+|+.. +.++++.+..++. +.|+|.. ++.+ ++++.||+|++||.+|+||++++||||||+|||+|+
T Consensus 225 ~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~ 304 (372)
T cd03792 225 VLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGP 304 (372)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcC
Confidence 999998652 2344545445543 8888876 4444 899999999999999999999999999999999999
Q ss_pred CCC-ccccccCCcEEecCCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHh
Q 007215 467 HPS-NEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 467 ~gg-~~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
.++ .+.+.++.+|+++.+.++++++|.+++.+ ++.++ +...+.|+|+.+++++++.|+
T Consensus 305 ~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 305 VGGIPLQIEDGETGFLVDTVEEAAVRILYLLRD-PELRRKMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred CCCchhhcccCCceEEeCCcHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 998 45566788999988899999999999954 43322 223567999999999999998
No 19
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=7.8e-31 Score=283.91 Aligned_cols=264 Identities=14% Similarity=0.135 Sum_probs=199.2
Q ss_pred hhhccCCCccEEEECCCchhHHhhhhHHHhh--hCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEE
Q 007215 244 SQFIPSKDADIAILEEPEHLNWYHHGKRWTD--KFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVL 320 (612)
Q Consensus 244 ~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~--~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI 320 (612)
...+.+.+||+||+|..... +.. ..... ..+ +++.++|......... .......+... .+ .+|.++
T Consensus 111 ~~~~~~~~~diihaH~~~~~-~~~--~~~~~~~~~~~~~~~t~Hg~d~~~~~~------~~~~~~~~~~~-~~-~ad~vv 179 (406)
T PRK15427 111 AQVATPFVADVFIAHFGPAG-VTA--AKLRELGVLRGKIATIFHGIDISSREV------LNHYTPEYQQL-FR-RGDLML 179 (406)
T ss_pred hhhhccCCCCEEEEcCChHH-HHH--HHHHHhCCCCCCeEEEEcccccccchh------hhhhhHHHHHH-HH-hCCEEE
Confidence 34445778999999875432 222 12222 233 7888999753211100 01111111222 22 489999
Q ss_pred EeChhhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCC
Q 007215 321 RLSAATQD------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLD 393 (612)
Q Consensus 321 ~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~ 393 (612)
++|+..++ .+.+++.++ ||+|++.|.+..... ......++|+||+.+.||++.+++|++.+.++.+
T Consensus 180 ~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~~-------~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~ 252 (406)
T PRK15427 180 PISDLWAGRLQKMGCPPEKIAVSRMGVDMTRFSPRPVKA-------PATPLEIISVARLTEKKGLHVAIEACRQLKEQGV 252 (406)
T ss_pred ECCHHHHHHHHHcCCCHHHEEEcCCCCCHHHcCCCcccc-------CCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCC
Confidence 99997655 334677777 899988876532211 1234579999999999999999999999988888
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCC------CcchHHHHHHHHcCCcEE
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS------DVLCTATAEALAMGKFVI 463 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~------E~fgl~llEAMA~G~PVV 463 (612)
+++++|+|+|+..+++++++++++++ |.|+|.+++.+ ++++.||+||+||.. ||||++++||||||+|||
T Consensus 253 ~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI 332 (406)
T PRK15427 253 AFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVV 332 (406)
T ss_pred CEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEE
Confidence 99999999999999999999999986 99999998776 999999999999984 999999999999999999
Q ss_pred eeCCCCcccc-ccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHh
Q 007215 464 CADHPSNEFF-RSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 464 as~~gg~~~i-~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+|+.||.+++ .++.+|+++ +|+++++++|.++++.+++.++ +...+.|+|+.+++++.+.|+
T Consensus 333 ~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 333 STLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999996554 557899888 8999999999999963554332 344577999999999999987
No 20
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.3e-31 Score=296.07 Aligned_cols=271 Identities=17% Similarity=0.170 Sum_probs=192.9
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhh------CC-CEEEEEeCCcHhHH------HHhccchhHHH--------HHHHH
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDK------FN-HVVGVVHTNYLEYI------KREKNGALQAF--------FVKHI 307 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~------~~-pvv~~~H~~~~~~~------~~~~~~~~~~~--------~~~~i 307 (612)
..+|||||+|++....... ..... .+ |+|.++|+...... ........... ....+
T Consensus 127 ~~~pDviH~hd~~t~~~~~---~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (476)
T cd03791 127 GWKPDIIHCHDWHTGLVPA---LLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNF 203 (476)
T ss_pred CCCCcEEEECchHHHHHHH---HHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccH
Confidence 3799999999876422221 22222 25 99999998643211 00000000000 00122
Q ss_pred HHHHHHhcCCeEEEeChhhhc-cC---------------CCcEEEe-CCCCCCCCCCCccc-------------------
Q 007215 308 NNWVTRAYCDKVLRLSAATQD-LP---------------KSVICNV-HGVNPKFLQIGEKV------------------- 351 (612)
Q Consensus 308 ~~~~~~~~ad~vI~~S~~~~~-~~---------------~~~i~vi-nGVd~~~f~~~~~~------------------- 351 (612)
.+.... .||.++++|+..++ +. ..++.+| ||+|.+.|.+....
T Consensus 204 ~~~~~~-~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~ 282 (476)
T cd03791 204 LKAGIV-YADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKA 282 (476)
T ss_pred HHHHHH-hcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHH
Confidence 233222 58999999986543 21 3567777 99999888765321
Q ss_pred hhhhhhccC--CCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH--HHHHHHHHHcCCceEEecCCC
Q 007215 352 ATDREQGQQ--AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLNLNFQKGRD 427 (612)
Q Consensus 352 ~~~~~~~~~--~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l~v~f~g~~~ 427 (612)
..+++++++ ++.++++|+||+.++||++.+++|+.++.++ +++|+++|.|+.. +.++++++++..++.|++..+
T Consensus 283 ~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 360 (476)
T cd03791 283 ALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYD 360 (476)
T ss_pred HHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 235556663 6788999999999999999999999998765 4899999998653 567777777654588777666
Q ss_pred CHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCcc-ccccCC------cEEec--CCHHHHHHHHHHHH
Q 007215 428 HAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE-FFRSFP------NCLTY--KTSEDFVARVKEAL 496 (612)
Q Consensus 428 ~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~-~i~~~~------~g~l~--~d~~~la~aI~~ll 496 (612)
+.. ++++.||++++||.+|+||++++|||+||+|||+++.||.. .+.++. +|+++ .|+++++++|.+++
T Consensus 361 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l 440 (476)
T cd03791 361 EALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRAL 440 (476)
T ss_pred HHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHH
Confidence 544 78999999999999999999999999999999999999954 555555 89988 78999999999987
Q ss_pred hC--CCCCCC----HHHHhcCCHHHHHHHHHHHHh
Q 007215 497 AN--DPQPLT----PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 497 ~~--~~~~~~----~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+. +++.+. +..+..|+|+.++++|.+.|+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 441 ALYRDPEAWRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHcCHHHHHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 42 333333 223356999999999999997
No 21
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3e-31 Score=292.48 Aligned_cols=275 Identities=14% Similarity=0.177 Sum_probs=192.2
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhH-HHH---hccchhHHHH----HH-----HHHHHHHHh
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEY-IKR---EKNGALQAFF----VK-----HINNWVTRA 314 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~-~~~---~~~~~~~~~~----~~-----~i~~~~~~~ 314 (612)
+.+|||||+|++.. ++...-+.+..+.+ |.|.++|+....- ... ...+.....+ .. .+.+...+
T Consensus 131 ~~~pDIiH~Hdw~~-~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~- 208 (485)
T PRK14099 131 GFVPDIVHAHDWQA-GLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQ- 208 (485)
T ss_pred CCCCCEEEECCcHH-HHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHH-
Confidence 57999999998653 22220111222334 8999999863211 000 0000000000 00 01222222
Q ss_pred cCCeEEEeChhhhc-c---------------CCCcEEEe-CCCCCCCCCCCcc-------------------chhhhhhc
Q 007215 315 YCDKVLRLSAATQD-L---------------PKSVICNV-HGVNPKFLQIGEK-------------------VATDREQG 358 (612)
Q Consensus 315 ~ad~vI~~S~~~~~-~---------------~~~~i~vi-nGVd~~~f~~~~~-------------------~~~~~~~~ 358 (612)
.||.|+++|+..++ + ..+++.+| ||||++.|.|... ...+++++
T Consensus 209 ~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g 288 (485)
T PRK14099 209 LADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFG 288 (485)
T ss_pred hcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcC
Confidence 58999999997544 2 13567777 9999998876532 23455677
Q ss_pred cCC--CCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCce-EEecCCCCHHHHH
Q 007215 359 QQA--FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNL-NFQKGRDHADDSL 433 (612)
Q Consensus 359 ~~~--~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v-~f~g~~~~~~~ll 433 (612)
++. +.++++++||+.++||++.|++|++++.++ +++|+|+|+|+. .+.+++++++++..+ .|+|...+...++
T Consensus 289 l~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~ 366 (485)
T PRK14099 289 LDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLI 366 (485)
T ss_pred CCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHH
Confidence 753 467889999999999999999999998753 689999999874 477888888877565 5788744444666
Q ss_pred -hccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccC---------CcEEec--CCHHHHHHHHHH---HHh
Q 007215 434 -HGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRSF---------PNCLTY--KTSEDFVARVKE---ALA 497 (612)
Q Consensus 434 -~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~---------~~g~l~--~d~~~la~aI~~---ll~ 497 (612)
+.||+||+||.+|+||++++|||+||+|+|++++||..+ +.++ .+|+++ .|+++|+++|.+ ++
T Consensus 367 ~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~- 445 (485)
T PRK14099 367 QAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALF- 445 (485)
T ss_pred HhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHh-
Confidence 579999999999999999999999999889999998644 4443 589988 899999999997 55
Q ss_pred CCCCCCCHHH----HhcCCHHHHHHHHHHHHhccccc
Q 007215 498 NDPQPLTPEQ----RYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 498 ~~~~~~~~~~----~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
+++..++++. .+.|||++++++|.++|+ +++
T Consensus 446 ~d~~~~~~l~~~~~~~~fSw~~~a~~y~~lY~--~l~ 480 (485)
T PRK14099 446 ADPVAWRRLQRNGMTTDVSWRNPAQHYAALYR--SLV 480 (485)
T ss_pred cCHHHHHHHHHHhhhhcCChHHHHHHHHHHHH--HHH
Confidence 4444444332 356999999999999999 554
No 22
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=3.6e-31 Score=292.13 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=169.0
Q ss_pred cCCeEEEeChhhhc-cC----------------CCcEEEe-CCCCCCCCCCCccc-------------------hhhhhh
Q 007215 315 YCDKVLRLSAATQD-LP----------------KSVICNV-HGVNPKFLQIGEKV-------------------ATDREQ 357 (612)
Q Consensus 315 ~ad~vI~~S~~~~~-~~----------------~~~i~vi-nGVd~~~f~~~~~~-------------------~~~~~~ 357 (612)
+||.|+++|+..++ +. ..++.+| ||||++.|.|.... ..++++
T Consensus 220 ~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~l 299 (489)
T PRK14098 220 HADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEV 299 (489)
T ss_pred hcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHh
Confidence 58999999996544 21 3467777 99999988765321 233455
Q ss_pred ccC--CCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHH--H
Q 007215 358 GQQ--AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHAD--D 431 (612)
Q Consensus 358 ~~~--~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~--~ 431 (612)
+++ ++.++++|+||+.++||++.|++|+.++.+ .+++|+|+|+|+. .+.+++++++++.+|.|.|.+++.+ +
T Consensus 300 gl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 300 GLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHL 377 (489)
T ss_pred CCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHH
Confidence 554 456899999999999999999999999876 3799999999885 3788888888876699999988765 8
Q ss_pred HHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-ccc----CCcEEec--CCHHHHHHHHHHHHh--CCCCC
Q 007215 432 SLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRS----FPNCLTY--KTSEDFVARVKEALA--NDPQP 502 (612)
Q Consensus 432 ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~----~~~g~l~--~d~~~la~aI~~ll~--~~~~~ 502 (612)
+++.||+||+||.+|+||++.+|||+||+|+|++++||..+ +.+ +.+|+++ .|+++++++|.++++ ++++.
T Consensus 378 ~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~ 457 (489)
T PRK14098 378 AIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEER 457 (489)
T ss_pred HHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999999999998643 332 5789988 899999999998753 34444
Q ss_pred CCHH----HHhcCCHHHHHHHHHHHHh
Q 007215 503 LTPE----QRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 503 ~~~~----~~~~~sWe~~~~~~~~~y~ 525 (612)
++.+ ..+.|||+.++++|.++|+
T Consensus 458 ~~~~~~~~~~~~fsw~~~a~~y~~lY~ 484 (489)
T PRK14098 458 WEELVLEAMERDFSWKNSAEEYAQLYR 484 (489)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4332 2367999999999999998
No 23
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.1e-30 Score=294.99 Aligned_cols=279 Identities=11% Similarity=-0.040 Sum_probs=200.9
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEE-EEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVG-VVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~-~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
...+.+.+++.+|||||++......+. ...++..+ |+|. +.|+........ . ..+....+.+.+....++
T Consensus 389 ~~~L~~~lk~~kpDIVH~h~~~a~~lg---~lAa~~~gvPvIv~t~h~~~~~~~~~----~-~~~~~~~l~~~l~~~~~~ 460 (694)
T PRK15179 389 TTKLTDVMRSSVPSVVHIWQDGSIFAC---ALAALLAGVPRIVLSVRTMPPVDRPD----R-YRVEYDIIYSELLKMRGV 460 (694)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHHHHH---HHHHHHcCCCEEEEEeCCCccccchh----H-HHHHHHHHHHHHHhcCCe
Confidence 356777788899999999876543222 23344445 7765 456543211100 0 011112222333333355
Q ss_pred eEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCccchh-hh--hhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 318 KVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEKVAT-DR--EQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 318 ~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~~~~-~~--~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
.+++.|+..++ .+.+++.+| ||||++.|.+...... .. ....+.+.++|+++||+.+.||++.+|+|+.
T Consensus 461 i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a 540 (694)
T PRK15179 461 ALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQ 540 (694)
T ss_pred EEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHH
Confidence 66777765432 445678888 8999877754321111 11 1122344678999999999999999999999
Q ss_pred HhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEe
Q 007215 387 KHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVIC 464 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVa 464 (612)
++.++.|+++|+|+|+|+..+.++++++++++. |.|+|..++...+++.+|+||+||.+|+||++++||||||+|||+
T Consensus 541 ~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa 620 (694)
T PRK15179 541 RFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT 620 (694)
T ss_pred HHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE
Confidence 998888999999999999999999999999986 999999988889999999999999999999999999999999999
Q ss_pred eCCCCcc-ccccCCcEEec--CC--HHHHHHHHHHHHhCCC---CCC---CHHHHhcCCHHHHHHHHHHHHhc
Q 007215 465 ADHPSNE-FFRSFPNCLTY--KT--SEDFVARVKEALANDP---QPL---TPEQRYNLSWEAATQRFIEYSEL 526 (612)
Q Consensus 465 s~~gg~~-~i~~~~~g~l~--~d--~~~la~aI~~ll~~~~---~~~---~~~~~~~~sWe~~~~~~~~~y~~ 526 (612)
|++||.. .+.++.+|+++ +| +++++++|.+++.+.. ... +....+.|||+.++++|.+.|++
T Consensus 621 t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~~ 693 (694)
T PRK15179 621 TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQM 693 (694)
T ss_pred ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 9999855 45567899998 45 4689999988874321 111 13345689999999999999983
No 24
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.98 E-value=2.5e-30 Score=272.04 Aligned_cols=333 Identities=21% Similarity=0.260 Sum_probs=230.6
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEE-cCCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELV-YPNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V-~p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
||+++|..|+|..+| +.......+ +|++. ||+|++ .+.. ......... ....
T Consensus 1 kil~~~~~~~p~~~G-~~~~~~~l~~~L~~~--------------g~~v~v~~~~~--~~~~~~~~~---------~~~~ 54 (374)
T cd03817 1 KIGIFTDTYLPQVNG-VATSIRRLAEELEKR--------------GHEVYVVAPSY--PGAPEEEEV---------VVVR 54 (374)
T ss_pred CeeEeehhccCCCCC-eehHHHHHHHHHHHc--------------CCeEEEEeCCC--CCCCccccc---------cccc
Confidence 699999999999888 666666666 99999 888887 3331 000000000 0000
Q ss_pred CceecccCCCcccccccccC-hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccc
Q 007215 220 DFKISFYPGKFSKERRSIIP-AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG 297 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~~si~~-~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~ 297 (612)
.... ............. ...+...+.+.+||+||++.+....... ..+.++.+ |++..+|+.+..+.......
T Consensus 55 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 129 (374)
T cd03817 55 PFRV---PTFKYPDFRLPLPIPRALIIILKELGPDIVHTHTPFSLGLLG--LRVARKLGIPVVATYHTMYEDYTHYVPLG 129 (374)
T ss_pred cccc---ccchhhhhhccccHHHHHHHHHhhcCCCEEEECCchhhhhHH--HHHHHHcCCCEEEEecCCHHHHHHHHhcc
Confidence 0000 0000000111111 2233444667899999999886554443 45566667 99999999887665332221
Q ss_pred h-hHHHHHH-HHHHHHHHhcCCeEEEeChhhhc----c-CCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEE
Q 007215 298 A-LQAFFVK-HINNWVTRAYCDKVLRLSAATQD----L-PKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFL 369 (612)
Q Consensus 298 ~-~~~~~~~-~i~~~~~~~~ad~vI~~S~~~~~----~-~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~v 369 (612)
. ....... .+++.... .+|.++++|+.+++ . ...++.++ ||+|...+.+......+..++....++.++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~-~~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 208 (374)
T cd03817 130 RLLARAVVRRKLSRRFYN-RCDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYV 208 (374)
T ss_pred cchhHHHHHHHHHHHHhh-hCCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCCCCCeEEEEE
Confidence 1 1111222 34444444 58999999997655 1 23446666 79998877665443334445555667889999
Q ss_pred eccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCC
Q 007215 370 GKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS 445 (612)
Q Consensus 370 Grl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~ 445 (612)
|++.+.||++.++++++.+.++.++++++++|.++..+.++++++++++. +.|+|.+++.+ ++++.||++++||..
T Consensus 209 G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~ 288 (374)
T cd03817 209 GRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTT 288 (374)
T ss_pred eeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccc
Confidence 99999999999999999998877899999999999988899988888765 89999987666 999999999999999
Q ss_pred CcchHHHHHHHHcCCcEEeeCCCCcc-ccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCCHHH
Q 007215 446 DVLCTATAEALAMGKFVICADHPSNE-FFRSFPNCLTY-KTSEDFVARVKEALANDPQPLTPEQ 507 (612)
Q Consensus 446 E~fgl~llEAMA~G~PVVas~~gg~~-~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~~~~ 507 (612)
|++|++++|||+||+|||+++.|+.. .+.++.+|+++ .+.++++++|.++++ +++..+.+.
T Consensus 289 e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~-~~~~~~~~~ 351 (374)
T cd03817 289 ETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQ-DPELRRRLS 351 (374)
T ss_pred cCcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHHh-ChHHHHHHH
Confidence 99999999999999999999999854 45556889988 333399999999994 444434333
No 25
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.98 E-value=1.2e-30 Score=280.40 Aligned_cols=250 Identities=20% Similarity=0.238 Sum_probs=195.0
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhh-CC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhh
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDK-FN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAAT 326 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~-~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~ 326 (612)
..++||||+++...+ +. ....+ .+ +++.++|..+.... +. .++.+|++|+.+
T Consensus 97 ~~~~~vi~v~~~~~~--~~---~~~~~~~~~~~v~~~h~~~~~~~---------------~~------~~~~ii~~S~~~ 150 (380)
T PRK15484 97 ITKDSVIVIHNSMKL--YR---QIRERAPQAKLVMHMHNAFEPEL---------------LD------KNAKIIVPSQFL 150 (380)
T ss_pred CCCCcEEEEeCcHHh--HH---HHHhhCCCCCEEEEEecccChhH---------------hc------cCCEEEEcCHHH
Confidence 466999999875432 22 22233 33 88888887642111 00 358999999987
Q ss_pred hc-----cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEE
Q 007215 327 QD-----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVF 400 (612)
Q Consensus 327 ~~-----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIv 400 (612)
++ ++..++.++ ||+|.+.|.+......+.+++.++++++++|+||+.+.||++.|++|++++.++.|+++|+|+
T Consensus 151 ~~~~~~~~~~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lviv 230 (380)
T PRK15484 151 KKFYEERLPNADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVV 230 (380)
T ss_pred HHHHHhhCCCCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 65 345677777 899988777654444566677766778999999999999999999999999888899999999
Q ss_pred ecCCCH---------HHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCC-CcchHHHHHHHHcCCcEEeeCCC
Q 007215 401 GNGEDA---------YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSIS-DVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 401 G~g~~~---------~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~-E~fgl~llEAMA~G~PVVas~~g 468 (612)
|+++.. +.+++++++++..+.|+|.++..+ ++++.||++|+||.+ |+||++++||||||+|||+|+.|
T Consensus 231 G~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g 310 (380)
T PRK15484 231 GDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG 310 (380)
T ss_pred eCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCC
Confidence 987632 356666777777799999987655 999999999999985 99999999999999999999999
Q ss_pred Cccc-cccCCcEE-ec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHHHHHh
Q 007215 469 SNEF-FRSFPNCL-TY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 469 g~~~-i~~~~~g~-l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
|..+ +.++.+|+ ++ .|+++++++|.+++++ ++..+ +...+.|+|+.++++|.+.|+
T Consensus 311 g~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d-~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 311 GITEFVLEGITGYHLAEPMTSDSIISDINRTLAD-PELTQIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred CcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8655 55678898 43 7999999999999954 43322 234567999999999999997
No 26
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.98 E-value=8e-31 Score=281.71 Aligned_cols=265 Identities=16% Similarity=0.129 Sum_probs=192.5
Q ss_pred ccCCCccEEEECCCchhHHhhhhHHHhhhCCCEEEEEeCCcHhHHHHhccchhH----HHHHHHHHHHHHHhcCCeEEEe
Q 007215 247 IPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQ----AFFVKHINNWVTRAYCDKVLRL 322 (612)
Q Consensus 247 l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~ad~vI~~ 322 (612)
+...++|+||++......+.. ....+ .|++..+|....... . ...+. ......++++..+ .+|.++++
T Consensus 90 ~~~~~~Dvi~~~~~~~~~~~~---~~~~~-~~~i~~~h~~~~~~~--~-~~~~~~~~~~~~~~~~e~~~~~-~ad~ii~~ 161 (392)
T cd03805 90 LPDEKYDVFIVDQVSACVPLL---KLFSP-SKILFYCHFPDQLLA--Q-RGSLLKRLYRKPFDWLEEFTTG-MADKIVVN 161 (392)
T ss_pred cccCCCCEEEEcCcchHHHHH---HHhcC-CcEEEEEecChHHhc--C-CCcHHHHHHHHHHHHHHHHHhh-CceEEEEc
Confidence 446789999997644322221 11111 488888884322111 1 11111 2223455555555 68999999
Q ss_pred Chhhhc-----cC---CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccC-
Q 007215 323 SAATQD-----LP---KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDL- 392 (612)
Q Consensus 323 S~~~~~-----~~---~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~- 392 (612)
|+.+++ ++ ...+.++ ||+|.+.+.+.............++.++++|+||+.+.||++.+++|++++.++.
T Consensus 162 s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~ 241 (392)
T cd03805 162 SNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLA 241 (392)
T ss_pred ChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcc
Confidence 997765 12 1333355 8999887765433222233344566788999999999999999999999998876
Q ss_pred --CCeEEEEEecCCCH--------HHHHHHHHH-cCCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHH
Q 007215 393 --DGFKLDVFGNGEDA--------YEVQSAAKR-LDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALA 457 (612)
Q Consensus 393 --~~~~LvIvG~g~~~--------~~l~~~~~~-l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA 457 (612)
++++|+++|+++.. +++++++++ +++. |.|+|.+++.+ ++++.||++++||..|+||++++||||
T Consensus 242 ~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma 321 (392)
T cd03805 242 EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMY 321 (392)
T ss_pred cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHH
Confidence 79999999998753 678888888 7775 99999999887 899999999999999999999999999
Q ss_pred cCCcEEeeCCCCcc-ccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHH
Q 007215 458 MGKFVICADHPSNE-FFRSFPNCLTY-KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRF 520 (612)
Q Consensus 458 ~G~PVVas~~gg~~-~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~ 520 (612)
||+|||+|+.|+.. .+.++.+|+++ .|+++++++|.++++++ +..+ +...+.|+|+.+++++
T Consensus 322 ~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~-~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 322 AGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDP-DLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred cCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 99999999999855 45556789888 89999999999999554 3222 2245678998887753
No 27
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.98 E-value=2e-30 Score=272.60 Aligned_cols=349 Identities=19% Similarity=0.154 Sum_probs=230.2
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
||++|+..+.|..|| +.+.+..++ +|++. ||+|+|+ +.. ........ .....
T Consensus 1 kIl~i~~~~~~~~gG-~~~~~~~l~~~L~~~--------------g~~v~v~~~~~---~~~~~~~~--------~~~~~ 54 (375)
T cd03821 1 KILHVIPSFDPKYGG-PVRVVLNLSKALAKL--------------GHEVTVATTDA---GGDPLLVA--------LNGVP 54 (375)
T ss_pred CeEEEcCCCCcccCC-eehHHHHHHHHHHhc--------------CCcEEEEecCC---CCccchhh--------ccCce
Confidence 699999999877666 777777777 89888 8888883 221 11110000 00000
Q ss_pred CceecccCCCccccc-cccc-ChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhcc
Q 007215 220 DFKISFYPGKFSKER-RSII-PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKN 296 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~-~si~-~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~ 296 (612)
.... .....+.... .... ............++|+||++.+....... .....++.+ |++...|+....+.. ..
T Consensus 55 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~--~~ 130 (375)
T cd03821 55 VKLF-SINVAYGLNLARYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWAL--PH 130 (375)
T ss_pred eeec-ccchhhhhhhhhhccChhHHHHHHHhCCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEcccccccccc--cc
Confidence 0000 0000000000 0001 11112222335689999998754333222 234445556 999999987654431 11
Q ss_pred chhHHHHHH-HHHHHHHHhcCCeEEEeChhhhc-----cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEE
Q 007215 297 GALQAFFVK-HINNWVTRAYCDKVLRLSAATQD-----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFL 369 (612)
Q Consensus 297 ~~~~~~~~~-~i~~~~~~~~ad~vI~~S~~~~~-----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~v 369 (612)
..+...+.. ..++.... .++.+++.|..... ....++.++ ||+|.+.+.+......+..++....+++++|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 209 (375)
T cd03821 131 KALKKRLAWFLFERRLLQ-AAAAVHATSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKRIILFL 209 (375)
T ss_pred chhhhHHHHHHHHHHHHh-cCCEEEECCHHHHHHHHhhCCcccEEEcCCCcChhccCcchhhhhhhhccCCCCCcEEEEE
Confidence 111122221 22222222 57888888865433 345667777 79998877654322224445556677899999
Q ss_pred eccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH--HHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEecc
Q 007215 370 GKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPS 443 (612)
Q Consensus 370 Grl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS 443 (612)
|++.+.||++.+++|+.++.++.++++++++|.++.. ..++.+++++++. +.|+|.+++.+ ++++.||++|+||
T Consensus 210 G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps 289 (375)
T cd03821 210 GRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPS 289 (375)
T ss_pred eCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEecc
Confidence 9999999999999999999988899999999987543 4455555777765 89999999666 8999999999999
Q ss_pred CCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHH
Q 007215 444 ISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEA 515 (612)
Q Consensus 444 ~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~ 515 (612)
..|+||++++|||+||+|||+++.++..++.....|+++ .++++++++|.++++++ +... +...+.|+|+.
T Consensus 290 ~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~s~~~ 368 (375)
T cd03821 290 HSENFGIVVAEALACGTPVVTTDKVPWQELIEYGCGWVVDDDVDALAAALRRALELP-QRLKAMGENGRALVEERFSWTA 368 (375)
T ss_pred ccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhcCceEEeCCChHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999986665555778877 77799999999999553 2222 33367899999
Q ss_pred HHHHHHH
Q 007215 516 ATQRFIE 522 (612)
Q Consensus 516 ~~~~~~~ 522 (612)
+++++.+
T Consensus 369 ~~~~~~~ 375 (375)
T cd03821 369 IAQQLLE 375 (375)
T ss_pred HHHHhhC
Confidence 9988763
No 28
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.97 E-value=3.7e-30 Score=272.10 Aligned_cols=323 Identities=16% Similarity=0.132 Sum_probs=218.1
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEE-cCCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELV-YPNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V-~p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
||+++++.+ . .||+.+.+..++ +|++. |++|++ .+.. ........ +. . ....
T Consensus 1 kIl~~~~~~--~-~GG~~~~~~~l~~~L~~~--------------~~~v~~i~~~~---~~~~~~~~----~~-~-~~~~ 54 (358)
T cd03812 1 KILHIVGTM--N-RGGIETFIMNYYRNLDRS--------------KIQFDFLVTSK---EEGDYDDE----IE-K-LGGK 54 (358)
T ss_pred CEEEEeCCC--C-CccHHHHHHHHHHhcCcc--------------ceEEEEEEeCC---CCcchHHH----HH-H-cCCe
Confidence 689999877 3 444777777777 88877 888887 3331 11111110 00 0 0111
Q ss_pred CceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CE-EEEEeCCcHhHHHHhccc
Q 007215 220 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HV-VGVVHTNYLEYIKREKNG 297 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pv-v~~~H~~~~~~~~~~~~~ 297 (612)
.+.+ +.+. .........+.+.+.+.+||+||++.+....... .+.+..+ +. +...|..+...... .
T Consensus 55 ~~~~---~~~~---~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~--~- 122 (358)
T cd03812 55 IYYI---PARK---KNPLKYFKKLYKLIKKNKYDIVHVHGSSASGFIL---LAAKKAGVKVRIAHSHNTSDSHDKK--K- 122 (358)
T ss_pred EEEe---cCCC---ccHHHHHHHHHHHHhcCCCCEEEEeCcchhHHHH---HHHhhCCCCeEEEEecccccccccc--c-
Confidence 1111 1100 1111122345556667899999998876333332 3344444 44 55566554322100 0
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----cCCCcEEEe-CCCCCCCCCCCcc-chhhhhhccCCCCcEEEEEe
Q 007215 298 ALQAFFVKHINNWVTRAYCDKVLRLSAATQD-----LPKSVICNV-HGVNPKFLQIGEK-VATDREQGQQAFSKGAYFLG 370 (612)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~~~~~i~vi-nGVd~~~f~~~~~-~~~~~~~~~~~~~~~il~vG 370 (612)
. ......+++...+ .+|.++++|+...+ ..+.++.++ ||+|.+.+.+... ...+.+.+..++++.++|+|
T Consensus 123 ~--~~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG 199 (358)
T cd03812 123 K--ILKYKVLRKLINR-LATDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVG 199 (358)
T ss_pred h--hhHHHHHHHHHHh-cCCEEEEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEe
Confidence 0 0001233344333 58999999997655 234677777 8999876654422 11234445566778999999
Q ss_pred ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcc
Q 007215 371 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVL 448 (612)
Q Consensus 371 rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~f 448 (612)
|+.++||++.+++|+..+.++.++++++|+|+|+..+.+++.++++++. +.|+|...+..++++.||++|+||..|+|
T Consensus 200 r~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~ 279 (358)
T cd03812 200 RFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGL 279 (358)
T ss_pred ccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCC
Confidence 9999999999999999999888999999999999998999988888875 89999977777999999999999999999
Q ss_pred hHHHHHHHHcCCcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCCHH
Q 007215 449 CTATAEALAMGKFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLTPE 506 (612)
Q Consensus 449 gl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~~~ 506 (612)
|++++||||||+|||+|+.|+..++..+..+++. +++++++++|.+++ ++++..+.+
T Consensus 280 ~~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~-~~~~~~~~~ 338 (358)
T cd03812 280 PLVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLK-SEDRRERSS 338 (358)
T ss_pred CHHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHH-hCcchhhhh
Confidence 9999999999999999999996665555445544 67899999999999 445544433
No 29
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.97 E-value=4.1e-31 Score=264.67 Aligned_cols=347 Identities=14% Similarity=0.160 Sum_probs=245.7
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 220 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~~ 220 (612)
+|++|+++|+|..|| ++...+.+. .|-+. ||.|.|.+.. |..... -.|+.+-+ .+...+.
T Consensus 2 ~i~mVsdff~P~~gg-veshiy~lSq~li~l--------------ghkVvvitha-yg~r~g-irylt~gl--kVyylp~ 62 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGG-VESHIYALSQCLIRL--------------GHKVVVITHA-YGNRVG-IRYLTNGL--KVYYLPA 62 (426)
T ss_pred cceeeCcccccCCCC-hhhhHHHhhcchhhc--------------CCeEEEEecc-ccCccc-eeeecCCc--eEEEEee
Confidence 699999999999888 777777777 67777 9998884430 111100 01100000 0111110
Q ss_pred ceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchh
Q 007215 221 FKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGAL 299 (612)
Q Consensus 221 ~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~ 299 (612)
. ..|...--....+. +.-+...+.+++..+||-|.++..... .++..++..+ +.|++-|..+.--. +
T Consensus 63 ~--v~~n~tT~ptv~~~--~Pllr~i~lrE~I~ivhghs~fS~lah-e~l~hartMGlktVfTdHSlfGfad-------~ 130 (426)
T KOG1111|consen 63 V--VGYNQTTFPTVFSD--FPLLRPILLRERIEIVHGHSPFSYLAH-EALMHARTMGLKTVFTDHSLFGFAD-------I 130 (426)
T ss_pred e--eeecccchhhhhcc--CcccchhhhhhceEEEecCChHHHHHH-HHHHHHHhcCceEEEeccccccccc-------h
Confidence 0 01111000001111 222344455778999999888754333 3667777788 88888888542111 0
Q ss_pred HHHHHHHHHHHHHH--hcCCeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEE
Q 007215 300 QAFFVKHINNWVTR--AYCDKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFL 369 (612)
Q Consensus 300 ~~~~~~~i~~~~~~--~~ad~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~v 369 (612)
.+. ..++.+.- ...|.+||+|...++ ++.+++.+| |.++++.|.|...... +.+...++.+
T Consensus 131 ~si---~~n~ll~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~~------S~~i~~ivv~ 201 (426)
T KOG1111|consen 131 GSI---LTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADKP------SADIITIVVA 201 (426)
T ss_pred hhh---hhcceeeeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccccC------CCCeeEEEEE
Confidence 111 11221111 125899999997666 667888888 7999999988543311 1223688999
Q ss_pred eccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCC
Q 007215 370 GKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS 445 (612)
Q Consensus 370 Grl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~ 445 (612)
+|+.++||+|.|+++++++.+++|+++++|+|+||....+++..+++.+. |.++|.+++.+ +.|..-|+|++||..
T Consensus 202 sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlT 281 (426)
T KOG1111|consen 202 SRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLT 281 (426)
T ss_pred eeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHH
Confidence 99999999999999999999999999999999999998899988888876 99999999999 999999999999999
Q ss_pred CcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHhCC---CCCCCHHHHhcCCHHHHHHHHH
Q 007215 446 DVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALAND---PQPLTPEQRYNLSWEAATQRFI 521 (612)
Q Consensus 446 E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~---~~~~~~~~~~~~sWe~~~~~~~ 521 (612)
|.||++++|||+||+|||+|++||.+++.....-.+. .+++++++++++++..- |+.......+-|+|++++++..
T Consensus 282 Eafc~~ivEAaScGL~VVsTrVGGIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h~~v~~~y~w~dVa~rTe 361 (426)
T KOG1111|consen 282 EAFCMVIVEAASCGLPVVSTRVGGIPEVLPEDMITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKKMYSWKDVAERTE 361 (426)
T ss_pred HHHHHHHHHHHhCCCEEEEeecCCccccCCccceeccCCChHHHHHHHHHHHHHhccCchhHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999888876533333 77899999998887432 3334566778899999999999
Q ss_pred HHHhccccc
Q 007215 522 EYSELNRIL 530 (612)
Q Consensus 522 ~~y~~~~~~ 530 (612)
++|. +..
T Consensus 362 kvy~--r~~ 368 (426)
T KOG1111|consen 362 KVYD--RAA 368 (426)
T ss_pred HHHH--HHh
Confidence 9999 544
No 30
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=6.5e-30 Score=288.57 Aligned_cols=272 Identities=10% Similarity=0.144 Sum_probs=192.6
Q ss_pred CCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccch----h--HHHHHHHHH-HHHHHhcCCeEEE
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA----L--QAFFVKHIN-NWVTRAYCDKVLR 321 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~----~--~~~~~~~i~-~~~~~~~ad~vI~ 321 (612)
.+||+||+|.+.. ++.+ ...+++.+ |.+.+.|+.-... ....+. . ...+...+. .......||.||+
T Consensus 384 ~~pDlIHahy~d~-glva--~lla~~lgVP~v~t~HsL~~~K--~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IIt 458 (784)
T TIGR02470 384 GKPDLIIGNYSDG-NLVA--SLLARKLGVTQCTIAHALEKTK--YPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIIT 458 (784)
T ss_pred CCCCEEEECCCch-HHHH--HHHHHhcCCCEEEECCcchhhc--ccccccccccchhHHHhhhhhhHHHHHHhcCCEEEE
Confidence 4799999987653 2333 56788888 9999999763211 111010 0 001111111 2233336999999
Q ss_pred eChhh-h---c------------------------cCCCcEEEe-CCCCCCCCCCCccchh-------------------
Q 007215 322 LSAAT-Q---D------------------------LPKSVICNV-HGVNPKFLQIGEKVAT------------------- 353 (612)
Q Consensus 322 ~S~~~-~---~------------------------~~~~~i~vi-nGVd~~~f~~~~~~~~------------------- 353 (612)
.|... . + .+..++.++ ||+|++.|.|......
T Consensus 459 sT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~ 538 (784)
T TIGR02470 459 STYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDN 538 (784)
T ss_pred CcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhH
Confidence 99632 1 0 134677778 7999886655422111
Q ss_pred hhhhcc--CCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC------------HHHHHHHHHHcCCc
Q 007215 354 DREQGQ--QAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED------------AYEVQSAAKRLDLN 419 (612)
Q Consensus 354 ~~~~~~--~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~------------~~~l~~~~~~l~l~ 419 (612)
++.++. .+++++|+++||+.+.||++.|++|+.++.+..++++|+|+|++.+ .+.+.++++++++.
T Consensus 539 ~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~ 618 (784)
T TIGR02470 539 DEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH 618 (784)
T ss_pred HHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC
Confidence 133443 5678899999999999999999999988765446789999998753 14566788899876
Q ss_pred --eEEecCCCC---HHHHHh----ccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCcc-ccccCCcEEec--CCHHH
Q 007215 420 --LNFQKGRDH---ADDSLH----GYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE-FFRSFPNCLTY--KTSED 487 (612)
Q Consensus 420 --v~f~g~~~~---~~~ll~----~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~-~i~~~~~g~l~--~d~~~ 487 (612)
|.|+|...+ ..++++ .+|+||+||.+|+||++++||||||+|||+|+.||.. .|.++.+|+++ .|+++
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~ea 698 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEE 698 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHH
Confidence 899997532 235664 2479999999999999999999999999999999955 56678999998 79999
Q ss_pred HHHHHHHHHh---CCCCCCC-------HHHHhcCCHHHHHHHHHHHHhc
Q 007215 488 FVARVKEALA---NDPQPLT-------PEQRYNLSWEAATQRFIEYSEL 526 (612)
Q Consensus 488 la~aI~~ll~---~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~~ 526 (612)
++++|.++++ .++..+. +...+.|+|+.++++++.....
T Consensus 699 LA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~~ 747 (784)
T TIGR02470 699 AAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAGI 747 (784)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999998873 3554443 2224679999999999988763
No 31
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.97 E-value=3.6e-30 Score=271.95 Aligned_cols=337 Identities=14% Similarity=0.099 Sum_probs=234.1
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 220 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~~ 220 (612)
||+++++.+ . .||+++.+..++ +|.++ ||+|+|+... ..+... .. . .....
T Consensus 1 ~il~~~~~~--~-~gG~~~~~~~l~~~L~~~--------------g~~v~v~~~~--~~~~~~-~~-~-----~~~~~-- 52 (360)
T cd04951 1 KILYVITGL--G-LGGAEKQVVDLADQFVAK--------------GHQVAIISLT--GESEVK-PP-I-----DATII-- 52 (360)
T ss_pred CeEEEecCC--C-CCCHHHHHHHHHHhcccC--------------CceEEEEEEe--CCCCcc-ch-h-----hccce--
Confidence 588887765 2 355888888877 89888 8888873110 111000 00 0 00000
Q ss_pred ceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchh
Q 007215 221 FKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGAL 299 (612)
Q Consensus 221 ~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~ 299 (612)
..+..... ..........+.+.+.+.+||+||++.+....+.. -..+. ..+ +++.+.|+....
T Consensus 53 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~-l~~~~-~~~~~~v~~~h~~~~~---------- 116 (360)
T cd04951 53 LNLNMSKN----PLSFLLALWKLRKILRQFKPDVVHAHMFHANIFAR-LLRLF-LPSPPLICTAHSKNEG---------- 116 (360)
T ss_pred EEeccccc----chhhHHHHHHHHHHHHhcCCCEEEEcccchHHHHH-HHHhh-CCCCcEEEEeeccCch----------
Confidence 01111100 01111123345566777899999998765332222 01122 223 888888875421
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCc--cchhhhhhccCCCCcEEEEE
Q 007215 300 QAFFVKHINNWVTRAYCDKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGE--KVATDREQGQQAFSKGAYFL 369 (612)
Q Consensus 300 ~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~--~~~~~~~~~~~~~~~~il~v 369 (612)
......+.++..+ .++.++++|+...+ ++.+++.++ ||+|...+.+.. ....+.++++.+++++++|+
T Consensus 117 -~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 194 (360)
T cd04951 117 -GRLRMLAYRLTDF-LSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAV 194 (360)
T ss_pred -hHHHHHHHHHHhh-ccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEE
Confidence 1111222222222 46788888886544 344677777 899987765542 23344556666777899999
Q ss_pred eccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCc
Q 007215 370 GKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDV 447 (612)
Q Consensus 370 Grl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~ 447 (612)
|++.+.||++.+++|+.++.++.++++|+|+|+|+..+.+++.++++++. +.|+|...+..++++.||++++||..|+
T Consensus 195 g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~ 274 (360)
T cd04951 195 GRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEG 274 (360)
T ss_pred eeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccC
Confidence 99999999999999999998888899999999999999999988888765 8999998888899999999999999999
Q ss_pred chHHHHHHHHcCCcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHH
Q 007215 448 LCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQR 519 (612)
Q Consensus 448 fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~ 519 (612)
||++++||||||+|||+++.|+..+++.. +|+.+ +|+++++++|.+++++++.... ....+.|+|+.++++
T Consensus 275 ~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~-~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 353 (360)
T cd04951 275 FGLVVAEAMACELPVVATDAGGVREVVGD-SGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQ 353 (360)
T ss_pred CChHHHHHHHcCCCEEEecCCChhhEecC-CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999986666554 56555 9999999999999955544322 334577999999999
Q ss_pred HHHHHh
Q 007215 520 FIEYSE 525 (612)
Q Consensus 520 ~~~~y~ 525 (612)
|.+.|+
T Consensus 354 ~~~~y~ 359 (360)
T cd04951 354 WLTLYT 359 (360)
T ss_pred HHHHhh
Confidence 999996
No 32
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=4.1e-30 Score=272.05 Aligned_cols=340 Identities=16% Similarity=0.173 Sum_probs=221.3
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
||+|++..+.|...||+++.+..++ +|.++ ||+|+|+ +.. ........ ..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~--------------g~~v~v~~~~~--~~~~~~~~------------~~ 52 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVAR--------------GHEVTVYCRSP--YPKQKETE------------YN 52 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhc--------------CCCEEEEEccC--CCCCcccc------------cC
Confidence 6999988766666666888888888 99999 8898883 221 01110000 01
Q ss_pred CceecccCCCccccc-ccccChHhHhhhc-cCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhcc
Q 007215 220 DFKISFYPGKFSKER-RSIIPAGDTSQFI-PSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKN 296 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~-~si~~~~~l~~~l-~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~ 296 (612)
++++...+....... ........+...+ .+.++|++|...|....+. ....+.+ |++.++|+...... ..
T Consensus 53 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~v~~~h~~~~~~~---~~ 125 (363)
T cd04955 53 GVRLIHIPAPEIGGLGTIIYDILAILHALFVKRDIDHVHALGPAIAPFL----PLLRLKGKKVVVNMDGLEWKRA---KW 125 (363)
T ss_pred CceEEEcCCCCccchhhhHHHHHHHHHHHhccCCeEEEEecCccHHHHH----HHHHhcCCCEEEEccCcceeec---cc
Confidence 222211111000000 0011111122222 2456777777666643222 2333346 89999887532211 11
Q ss_pred chhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEe
Q 007215 297 GALQAFFVKHINNWVTRAYCDKVLRLSAATQD-----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLG 370 (612)
Q Consensus 297 ~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vG 370 (612)
......+.+..+++..+ .+|.++++|+.+++ +.... .++ ||+|...+.+ ........+..+ ++.++|+|
T Consensus 126 ~~~~~~~~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~-~~i~ngv~~~~~~~--~~~~~~~~~~~~-~~~i~~~G 200 (363)
T cd04955 126 GRPAKRYLKFGEKLAVK-FADRLIADSPGIKEYLKEKYGRDS-TYIPYGADHVVSSE--EDEILKKYGLEP-GRYYLLVG 200 (363)
T ss_pred ccchhHHHHHHHHHHHh-hccEEEeCCHHHHHHHHHhcCCCC-eeeCCCcChhhcch--hhhhHHhcCCCC-CcEEEEEe
Confidence 11223334555555444 68999999997755 33344 445 8999776554 112223333333 35688999
Q ss_pred ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHH-HcCCc--eEEecCCCCHH--HHHhccceEEeccCC
Q 007215 371 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAK-RLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS 445 (612)
Q Consensus 371 rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~-~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~ 445 (612)
|+.+.||++.+++|++++.+ +++|+++|+++....+.+.+. ++++. |+|+|.+++.+ ++++.+|++++||..
T Consensus 201 ~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~ 277 (363)
T cd04955 201 RIVPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHS 277 (363)
T ss_pred cccccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCcc
Confidence 99999999999999998864 789999999876655555444 45543 99999998877 899999999999999
Q ss_pred -CcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHH
Q 007215 446 -DVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQ 518 (612)
Q Consensus 446 -E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~ 518 (612)
|+||++++||||||+|||+|+.|+..++.+. +|.++.+.+.++++|.++++++....+ +...+.|+|+.+++
T Consensus 278 ~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~-~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 356 (363)
T cd04955 278 VGGTNPSLLEAMAYGCPVLASDNPFNREVLGD-KAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIREKYTWEKIAD 356 (363)
T ss_pred CCCCChHHHHHHHcCCCEEEecCCccceeecC-CeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999987776665 677763333499999999955422211 23345699999999
Q ss_pred HHHHHHh
Q 007215 519 RFIEYSE 525 (612)
Q Consensus 519 ~~~~~y~ 525 (612)
+|.+.|+
T Consensus 357 ~~~~~y~ 363 (363)
T cd04955 357 QYEELYK 363 (363)
T ss_pred HHHHHhC
Confidence 9999985
No 33
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.97 E-value=7.7e-30 Score=267.08 Aligned_cols=342 Identities=18% Similarity=0.109 Sum_probs=239.4
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 220 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~~ 220 (612)
||++++..+.+ || +.+.+..++ +|.+. |+++.++.. ......... +.+ .+
T Consensus 1 ~i~~i~~~~~~--gG-~~~~~~~l~~~l~~~--------------~~~v~~~~~---~~~~~~~~~----~~~-----~~ 51 (365)
T cd03807 1 KVLHVITGLDV--GG-AERMLVRLLKGLDRD--------------RFEHVVISL---TDRGELGEE----LEE-----AG 51 (365)
T ss_pred CeEEEEeeccC--cc-HHHHHHHHHHHhhhc--------------cceEEEEec---CcchhhhHH----HHh-----cC
Confidence 68999998866 44 777777777 88888 888887321 011111111 111 11
Q ss_pred ceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhh-CC-CEEEEEeCCcHhHHHHhccch
Q 007215 221 FKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDK-FN-HVVGVVHTNYLEYIKREKNGA 298 (612)
Q Consensus 221 ~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~-~~-pvv~~~H~~~~~~~~~~~~~~ 298 (612)
+.+...+.. ...........+.+.+.+.+||+||++.+....+.. ..... .+ +++...|....... .
T Consensus 52 i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~div~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~------~ 120 (365)
T cd03807 52 VPVYCLGKR--PGRPDPGALLRLYKLIRRLRPDVVHTWMYHADLYGG---LAARLAGVPPVIWGIRHSDLDLG------K 120 (365)
T ss_pred CeEEEEecc--cccccHHHHHHHHHHHHhhCCCEEEeccccccHHHH---HHHHhcCCCcEEEEecCCccccc------c
Confidence 111111110 001222234556677778899999997654332222 11222 34 88888888764421 0
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEeChhhhc------cCCCcEEEe-CCCCCCCCCCCcc--chhhhhhccCCCCcEEEEE
Q 007215 299 LQAFFVKHINNWVTRAYCDKVLRLSAATQD------LPKSVICNV-HGVNPKFLQIGEK--VATDREQGQQAFSKGAYFL 369 (612)
Q Consensus 299 ~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~--~~~~~~~~~~~~~~~il~v 369 (612)
........+.+.+.+ .+|.++++|+...+ ++.+++.++ ||+|...+.+... ...+.++++++..+.++|+
T Consensus 121 ~~~~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 199 (365)
T cd03807 121 KSTRLVARLRRLLSS-FIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIV 199 (365)
T ss_pred hhHhHHHHHHHHhcc-ccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEe
Confidence 112333444444443 57888999997655 334667777 8999776655432 2233566677777899999
Q ss_pred eccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHH-HcCCc--eEEecCCCCHHHHHhccceEEeccCCC
Q 007215 370 GKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAK-RLDLN--LNFQKGRDHADDSLHGYKVFINPSISD 446 (612)
Q Consensus 370 Grl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~-~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E 446 (612)
|++.+.||++.+++|+..+.++.++++++++|.++.....+.... ++++. +.|+|...+..++++.||++++||..|
T Consensus 200 G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e 279 (365)
T cd03807 200 ARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSE 279 (365)
T ss_pred cccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccc
Confidence 999999999999999999988888999999999988877777776 67765 888998888889999999999999999
Q ss_pred cchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHH
Q 007215 447 VLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQ 518 (612)
Q Consensus 447 ~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~ 518 (612)
++|++++|||+||+|||+++.|+..++... +|+++ +|+++++++|.++++++....+ ....+.|+|+.+++
T Consensus 280 ~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~-~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 358 (365)
T cd03807 280 GFPNVLLEAMACGLPVVATDVGDNAELVGD-TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVE 358 (365)
T ss_pred cCCcHHHHHHhcCCCEEEcCCCChHHHhhc-CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999997766665 77776 7999999999999965432211 34456799999999
Q ss_pred HHHHHHh
Q 007215 519 RFIEYSE 525 (612)
Q Consensus 519 ~~~~~y~ 525 (612)
+|.+.|+
T Consensus 359 ~~~~~y~ 365 (365)
T cd03807 359 AYEELYR 365 (365)
T ss_pred HHHHHhC
Confidence 9999985
No 34
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=6.8e-30 Score=274.04 Aligned_cols=274 Identities=16% Similarity=0.170 Sum_probs=197.6
Q ss_pred HhhhccCC--CccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchh-HHHHHHHHHHHHHHhcCCe
Q 007215 243 TSQFIPSK--DADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGAL-QAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 243 l~~~l~~~--~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ad~ 318 (612)
+...+.+. +||+||++.+.. .+.. ..+++..+ |++.+.|+.............. ........++.+.+ .+|.
T Consensus 91 ~~~~~~~~~~~~Div~~~~~~~-~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~ 166 (398)
T cd03800 91 LLRFLRREGGRPDLIHAHYWDS-GLVA--LLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLR-AADR 166 (398)
T ss_pred HHHHHHhcCCCccEEEEecCcc-chHH--HHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHh-hCCE
Confidence 44445555 999999986542 2222 34556667 9999999764322111000000 11111233444444 6899
Q ss_pred EEEeChhhhc-----c--CCCcEEEe-CCCCCCCCCCCccchh-hhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhh
Q 007215 319 VLRLSAATQD-----L--PKSVICNV-HGVNPKFLQIGEKVAT-DREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHK 389 (612)
Q Consensus 319 vI~~S~~~~~-----~--~~~~i~vi-nGVd~~~f~~~~~~~~-~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~ 389 (612)
++++|+..++ . ...++.++ ||+|.+.+.+...... +.....++++++++|+||+.+.||++.+++|+..+.
T Consensus 167 ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~ 246 (398)
T cd03800 167 VIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELP 246 (398)
T ss_pred EEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHH
Confidence 9999997544 1 22446666 8999887765533222 333445566789999999999999999999999998
Q ss_pred ccCCCeEEEEEecCCCH------HHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcC
Q 007215 390 NDLDGFKLDVFGNGEDA------YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMG 459 (612)
Q Consensus 390 ~~~~~~~LvIvG~g~~~------~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G 459 (612)
++.++++++++|++... ..++++++++++. +.|+|.++..+ ++++.||++++||..|+||++++||||||
T Consensus 247 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G 326 (398)
T cd03800 247 ELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACG 326 (398)
T ss_pred HhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcC
Confidence 87889999999987653 3456677777764 89999998766 89999999999999999999999999999
Q ss_pred CcEEeeCCCCcc-ccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHH
Q 007215 460 KFVICADHPSNE-FFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFI 521 (612)
Q Consensus 460 ~PVVas~~gg~~-~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~ 521 (612)
+|||+++.++.. .+.++.+|+++ +|+++++++|.+++++ ++.+. ....+.|+|+.++++|.
T Consensus 327 ~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 327 LPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTD-PALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 999999998854 45556789888 6899999999999954 33222 33347799999999886
No 35
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=1.8e-29 Score=269.11 Aligned_cols=323 Identities=14% Similarity=0.187 Sum_probs=217.1
Q ss_pred ceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEE-cCCcccCCchhHHHHHHHHHHhhhCC-
Q 007215 141 RNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELV-YPNVTFCSPEEQENYMRNWLEERVGF- 217 (612)
Q Consensus 141 ~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V-~p~~~f~~~~~~~~~~~~w~~~~v~~- 217 (612)
|||+++++.+ |..|| +++.+..++ +|.++|. |+++.| .+.. .. .. .|++ ....
T Consensus 1 mkI~~~~~~~-~~~GG-~e~~~~~l~~~L~~~~~------------g~~v~v~~~~~---~~-~~-----~~~~-~~~~~ 56 (359)
T PRK09922 1 MKIAFIGEAV-SGFGG-METVISNVINTFEESKI------------NCEMFFFCRND---KM-DK-----AWLK-EIKYA 56 (359)
T ss_pred CeeEEecccc-cCCCc-hhHHHHHHHHHhhhcCc------------ceeEEEEecCC---CC-Ch-----HHHH-hcchh
Confidence 6899998765 54455 888888888 8888832 455555 3331 10 00 1111 1111
Q ss_pred --CCCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC---CEEEEEeCCcHhHHH
Q 007215 218 --KADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN---HVVGVVHTNYLEYIK 292 (612)
Q Consensus 218 --~~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~---pvv~~~H~~~~~~~~ 292 (612)
.+...+.+. +.......+.+.+.+.+||+||++++....+.. ..++..+ +++...|.......
T Consensus 57 ~~~~~~~~~~~--------~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~~~~~- 124 (359)
T PRK09922 57 QSFSNIKLSFL--------RRAKHVYNFSKWLKETQPDIVICIDVISCLYAN---KARKKSGKQFKIFSWPHFSLDHKK- 124 (359)
T ss_pred cccccchhhhh--------cccHHHHHHHHHHHhcCCCEEEEcCHHHHHHHH---HHHHHhCCCCeEEEEecCcccccc-
Confidence 111111111 111123456677888999999998865432222 2333333 44555564321110
Q ss_pred HhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc------cCCCcEEEe-CCCCCCCCC-CCccchhhhhhccCCCCc
Q 007215 293 REKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD------LPKSVICNV-HGVNPKFLQ-IGEKVATDREQGQQAFSK 364 (612)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~------~~~~~i~vi-nGVd~~~f~-~~~~~~~~~~~~~~~~~~ 364 (612)
. ....++ ..+|.++++|+.+++ ++.+++.++ ||+|.+.+. +... ..+++
T Consensus 125 --------~---~~~~~~---~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~~---------~~~~~ 181 (359)
T PRK09922 125 --------H---AECKKI---TCADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPPE---------RDKPA 181 (359)
T ss_pred --------h---hhhhhh---hcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCcc---------cCCCc
Confidence 0 001111 268999999998765 334567777 899954332 2111 12357
Q ss_pred EEEEEeccCC--ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH----HHHhcc
Q 007215 365 GAYFLGKMVW--AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD----DSLHGY 436 (612)
Q Consensus 365 ~il~vGrl~~--~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~----~ll~~a 436 (612)
+++|+||+.+ .||++.+++|+.++.. +++|+++|+|++.+.++++++++++. |.|+|.+++.. ++++.+
T Consensus 182 ~i~~~Grl~~~~~k~~~~l~~a~~~~~~---~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~ 258 (359)
T PRK09922 182 VFLYVGRLKFEGQKNVKELFDGLSQTTG---EWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNV 258 (359)
T ss_pred EEEEEEEEecccCcCHHHHHHHHHhhCC---CeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcC
Confidence 8999999864 5999999999998743 79999999999999999999998875 99999887643 667788
Q ss_pred ceEEeccCCCcchHHHHHHHHcCCcEEeeC-CCCccc-cccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC---HHHHh
Q 007215 437 KVFINPSISDVLCTATAEALAMGKFVICAD-HPSNEF-FRSFPNCLTY--KTSEDFVARVKEALANDPQPLT---PEQRY 509 (612)
Q Consensus 437 Dv~V~PS~~E~fgl~llEAMA~G~PVVas~-~gg~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~---~~~~~ 509 (612)
|++|+||.+|+||++++||||||+|||+|+ .||.++ +.++.+|+++ +|+++++++|.++++++..+.. .....
T Consensus 259 d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~ 338 (359)
T PRK09922 259 SALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIE 338 (359)
T ss_pred cEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999 777654 5567899887 8999999999999966543222 33345
Q ss_pred cCCHHHHHHHHHHHHh
Q 007215 510 NLSWEAATQRFIEYSE 525 (612)
Q Consensus 510 ~~sWe~~~~~~~~~y~ 525 (612)
.|+=+..++++.+.|+
T Consensus 339 ~~~~~~~~~~~~~~~~ 354 (359)
T PRK09922 339 RFYEVLYFKNLNNALF 354 (359)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5666777777777776
No 36
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.5e-29 Score=266.87 Aligned_cols=317 Identities=19% Similarity=0.149 Sum_probs=214.9
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 220 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~~ 220 (612)
||++++..|+|..|| +.+.+..++ +|.+. ||+|+|+... .. ...... .....+.
T Consensus 1 kil~i~~~~~p~~gG-~~~~~~~l~~~L~~~--------------g~~v~v~~~~--~~-~~~~~~-------~~~~~~~ 55 (357)
T cd03795 1 RVLHVGKFYPPDRGG-IEQVIRDLAEGLAAR--------------GIEVAVLCAS--PE-PKGRDE-------ERNGHRV 55 (357)
T ss_pred CeeEecCCCCCCCCc-HHHHHHHHHHHHHhC--------------CCceEEEecC--CC-Ccchhh-------hccCceE
Confidence 799999999998666 777777777 99999 8998884220 01 011111 0011111
Q ss_pred ceecccCCCcccccccccChHhHhh-hccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccch
Q 007215 221 FKISFYPGKFSKERRSIIPAGDTSQ-FIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA 298 (612)
Q Consensus 221 ~~i~~~~~~y~~~~~si~~~~~l~~-~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~ 298 (612)
.++..... ............. .+...+||+||++.+....... .+....+ |.+.++|+......
T Consensus 56 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~------- 121 (357)
T cd03795 56 IRAPSLLN----VASTPFSPSFFKQLKKLAKKADVIHLHFPNPLADLA---LLLLPRKKPVVVHWHSDIVKQK------- 121 (357)
T ss_pred EEeecccc----cccccccHHHHHHHHhcCCCCCEEEEecCcchHHHH---HHHhccCceEEEEEcChhhccc-------
Confidence 11111100 0000111111111 1446789999998876554333 2222234 88889997543211
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEeChhhhc----c--CCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEec
Q 007215 299 LQAFFVKHINNWVTRAYCDKVLRLSAATQD----L--PKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGK 371 (612)
Q Consensus 299 ~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~----~--~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGr 371 (612)
........+.+...+ .||.++++|+...+ . ...++.++ ||+|++.+.+...... .......+++.++|+|+
T Consensus 122 ~~~~~~~~~~~~~~~-~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~ 199 (357)
T cd03795 122 LLLKLYRPLQRRFLR-RADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEE-AIWRRAAGRPFFLFVGR 199 (357)
T ss_pred hhhhhhhHHHHHHHH-hcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhh-HhhcCCCCCcEEEEecc
Confidence 112223334444443 58999999997654 1 12566666 8999887765432211 22233455689999999
Q ss_pred cCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccC--C
Q 007215 372 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSI--S 445 (612)
Q Consensus 372 l~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~--~ 445 (612)
+.+.||++.+++|++++. +++++|+|+|+....+++.+++++.. |.|+|.+++.+ ++++.||++++||. .
T Consensus 200 ~~~~K~~~~li~a~~~l~----~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~ 275 (357)
T cd03795 200 LVYYKGLDVLLEAAAALP----DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERS 275 (357)
T ss_pred cccccCHHHHHHHHHhcc----CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccc
Confidence 999999999999999986 79999999999988899888777765 99999999766 99999999999996 4
Q ss_pred CcchHHHHHHHHcCCcEEeeCCCCc-ccccc-CCcEEec--CCHHHHHHHHHHHHhCCCCCCC
Q 007215 446 DVLCTATAEALAMGKFVICADHPSN-EFFRS-FPNCLTY--KTSEDFVARVKEALANDPQPLT 504 (612)
Q Consensus 446 E~fgl~llEAMA~G~PVVas~~gg~-~~i~~-~~~g~l~--~d~~~la~aI~~ll~~~~~~~~ 504 (612)
|+||++++|||+||+|||+|+.++. +.+.. +.+|+++ +|+++++++|.++++ +++.+.
T Consensus 276 e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~-~~~~~~ 337 (357)
T cd03795 276 EAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLE-DPELRE 337 (357)
T ss_pred cccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHH-CHHHHH
Confidence 9999999999999999999999975 45554 7889887 789999999999995 444333
No 37
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=1.8e-29 Score=274.26 Aligned_cols=275 Identities=12% Similarity=0.024 Sum_probs=192.1
Q ss_pred ccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHh-ccchhHHHHHHHHHHHHHHhcCCeEEEeCh
Q 007215 247 IPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKRE-KNGALQAFFVKHINNWVTRAYCDKVLRLSA 324 (612)
Q Consensus 247 l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~ 324 (612)
+...+||+||+++|..+.....+..+.+..+ |+|.++|+.+....... ........+...+++++.+ .||.+|++|+
T Consensus 91 ~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ad~ii~vS~ 169 (415)
T cd03816 91 YKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGR-LADYNLCVTK 169 (415)
T ss_pred HhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhh-cCCEeeecCH
Confidence 3456899999987554322211233455556 99999998754332111 1112223455677777666 7999999999
Q ss_pred hhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhh-----------------hcc-CCCCcEEEEEeccCCccCHH
Q 007215 325 ATQD------LPKSVICNV-HGVNPKFLQIGEKVATDRE-----------------QGQ-QAFSKGAYFLGKMVWAKGYR 379 (612)
Q Consensus 325 ~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~-----------------~~~-~~~~~~il~vGrl~~~Kg~~ 379 (612)
.+++ .+++++.++ ||.+ +.|.+......... .+. ++...+++++||+.+.||++
T Consensus 170 ~~~~~l~~~~~~~~ki~vI~Ng~~-~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~ 248 (415)
T cd03816 170 AMKEDLQQFNNWKIRATVLYDRPP-EQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFG 248 (415)
T ss_pred HHHHHHHhhhccCCCeeecCCCCH-HHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHH
Confidence 8765 345788888 7744 44443322111111 111 23345678899999999999
Q ss_pred HHHHHHHHhhc------cCCCeEEEEEecCCCHHHHHHHHHHcCCc-eEEe-cCCCCHH--HHHhccceEEeccC---CC
Q 007215 380 ELIDLLAKHKN------DLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQ-KGRDHAD--DSLHGYKVFINPSI---SD 446 (612)
Q Consensus 380 ~Li~A~~~l~~------~~~~~~LvIvG~g~~~~~l~~~~~~l~l~-v~f~-g~~~~~~--~ll~~aDv~V~PS~---~E 446 (612)
.|++|++.+++ ..|+++|+|+|+|+..+++++++++++++ +.|+ |.++..+ ++|+.||++|.|+. .|
T Consensus 249 ~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~ 328 (415)
T cd03816 249 ILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGL 328 (415)
T ss_pred HHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEcccccccc
Confidence 99999999875 24789999999999999999999999987 6665 4565444 99999999997533 37
Q ss_pred cchHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEecCCHHHHHHHHHHHHhCC--CCCCCHHHHhcCCHHHHHHHHHHH
Q 007215 447 VLCTATAEALAMGKFVICADHPSNEF-FRSFPNCLTYKTSEDFVARVKEALAND--PQPLTPEQRYNLSWEAATQRFIEY 523 (612)
Q Consensus 447 ~fgl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~~d~~~la~aI~~ll~~~--~~~~~~~~~~~~sWe~~~~~~~~~ 523 (612)
++|++++||||||+|||+|+.|+..+ +.++.+|++++|+++++++|.++++++ ++.+++++++.... ..+++...
T Consensus 329 ~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~--~~~~~~~~ 406 (415)
T cd03816 329 DLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFGDSEELAEQLIDLLSNFPNRGKLNSLKKGAQEE--SELRWDEN 406 (415)
T ss_pred CCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEECCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--hhcCHHHH
Confidence 89999999999999999999998554 556789999999999999999999652 55556555543322 33444444
Q ss_pred Hh
Q 007215 524 SE 525 (612)
Q Consensus 524 y~ 525 (612)
|.
T Consensus 407 ~~ 408 (415)
T cd03816 407 WD 408 (415)
T ss_pred HH
Confidence 44
No 38
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=2.5e-29 Score=262.09 Aligned_cols=350 Identities=19% Similarity=0.160 Sum_probs=240.4
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
||++++..++|..+| +...+..++ +|.+. ||+|.++ +.. ......... ....
T Consensus 1 kI~ii~~~~~~~~~G-~~~~~~~l~~~L~~~--------------g~~v~i~~~~~--~~~~~~~~~---------~~~~ 54 (374)
T cd03801 1 KILLVTPEYPPSVGG-AERHVLELARALAAR--------------GHEVTVLTPGD--GGLPDEEEV---------GGIV 54 (374)
T ss_pred CeeEEecccCCccCc-HhHHHHHHHHHHHhc--------------CceEEEEecCC--CCCCceeee---------cCcc
Confidence 699999999888455 666666666 89888 8888773 221 000000000 0000
Q ss_pred CceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccch
Q 007215 220 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA 298 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~ 298 (612)
.... ..................+...+.+.+||+||++.+....... ......+ |++..+|+......... ..
T Consensus 55 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~~~~--~~ 128 (374)
T cd03801 55 VVRP-PPLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAA---LAARLLGIPLVLTVHGLEFGRPGNE--LG 128 (374)
T ss_pred eecC-CcccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHH---HHHHhcCCcEEEEeccchhhccccc--hh
Confidence 0000 0000000001111122345566667899999998877654442 3444555 99999998876543111 11
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----cCC--CcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEe
Q 007215 299 LQAFFVKHINNWVTRAYCDKVLRLSAATQD-----LPK--SVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLG 370 (612)
Q Consensus 299 ~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~~~--~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vG 370 (612)
..........+.... .+|.++++|+.+.+ ... +++.++ ||+|+..+.+.. ...+........++.++|+|
T Consensus 129 ~~~~~~~~~~~~~~~-~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g 206 (374)
T cd03801 129 LLLKLARALERRALR-RADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP-RAARRRLGIPEDEPVILFVG 206 (374)
T ss_pred HHHHHHHHHHHHHHH-hCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc-hHHHhhcCCcCCCeEEEEec
Confidence 112233334444343 58999999997655 222 467777 799988776543 22223333345567899999
Q ss_pred ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCCC
Q 007215 371 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISD 446 (612)
Q Consensus 371 rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E 446 (612)
++.+.||++.+++++..+.++.++++++++|+++....+++.+++++.. +.|.|.++..+ ++++.||++++|+..|
T Consensus 207 ~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~ 286 (374)
T cd03801 207 RLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYE 286 (374)
T ss_pred chhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhc
Confidence 9999999999999999998888899999999888888888888777765 89999996555 9999999999999999
Q ss_pred cchHHHHHHHHcCCcEEeeCCCCcccccc-CCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHH
Q 007215 447 VLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAAT 517 (612)
Q Consensus 447 ~fgl~llEAMA~G~PVVas~~gg~~~i~~-~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~ 517 (612)
++|++++|||+||+|||+++.++..++.. +.+|+++ .|+++++++|.+++.++....+ +...+.|+|++++
T Consensus 287 ~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (374)
T cd03801 287 GFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVA 366 (374)
T ss_pred cccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999988655554 7888888 6689999999999954432211 2346779999999
Q ss_pred HHHHHHHh
Q 007215 518 QRFIEYSE 525 (612)
Q Consensus 518 ~~~~~~y~ 525 (612)
+++.+.|+
T Consensus 367 ~~~~~~~~ 374 (374)
T cd03801 367 ARTEEVYY 374 (374)
T ss_pred HHHHHhhC
Confidence 99999874
No 39
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=4.8e-29 Score=262.80 Aligned_cols=336 Identities=17% Similarity=0.112 Sum_probs=224.4
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 220 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~~ 220 (612)
||++|+.. +|..|| +.+.+..++ .|++. ||+|+++... ......... .....
T Consensus 1 kI~~v~~~-~~~~gG-~~~~~~~l~~~L~~~--------------g~~v~v~~~~--~~~~~~~~~---------~~~~~ 53 (366)
T cd03822 1 RIALVSPY-PPRKCG-IATFTTDLVNALSAR--------------GPDVLVVSVA--ALYPSLLYG---------GEQEV 53 (366)
T ss_pred CeEEecCC-CCCCCc-HHHHHHHHHHHhhhc--------------CCeEEEEEee--cccCcccCC---------Ccccc
Confidence 69999765 566555 788888888 89999 8888884220 000000000 00000
Q ss_pred ceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhH--Hhh-hhHHHhhhCC-CEEEEEeCCcHhHHHHhcc
Q 007215 221 FKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLN--WYH-HGKRWTDKFN-HVVGVVHTNYLEYIKREKN 296 (612)
Q Consensus 221 ~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~--~~~-~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~ 296 (612)
.. ............+.+.+.+.+||+||++.+..+. ... .........+ |++.++|+......
T Consensus 54 ~~--------~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----- 120 (366)
T cd03822 54 VR--------VIVLDNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP----- 120 (366)
T ss_pred ee--------eeecCCchhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc-----
Confidence 00 0001111122345566778899999996632111 111 0011223355 99999999711110
Q ss_pred chhHHHHHHHHHHHHHHhcCCeEEEeC-hhhhcc-C---CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEe
Q 007215 297 GALQAFFVKHINNWVTRAYCDKVLRLS-AATQDL-P---KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLG 370 (612)
Q Consensus 297 ~~~~~~~~~~i~~~~~~~~ad~vI~~S-~~~~~~-~---~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vG 370 (612)
......+.+.+.+ .+|.++++| +..+++ . .+++.++ ||+|...+.+.... .+.....++++++|+|
T Consensus 121 ----~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G 192 (366)
T cd03822 121 ----RPGDRALLRLLLR-RADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESL---KALGGLDGRPVLLTFG 192 (366)
T ss_pred ----chhhhHHHHHHHh-cCCEEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCcccCCchhh---HhhcCCCCCeEEEEEe
Confidence 1112223333333 589999996 444442 1 2577777 89987766543221 2233345568999999
Q ss_pred ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHH-----HHHHcCCc--eEEecC-CCCHH--HHHhccceEE
Q 007215 371 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQS-----AAKRLDLN--LNFQKG-RDHAD--DSLHGYKVFI 440 (612)
Q Consensus 371 rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~-----~~~~l~l~--v~f~g~-~~~~~--~ll~~aDv~V 440 (612)
++.+.||++.+++|++++.++.++++|+++|.+........ +++++++. |.|+|+ ++..+ ++++.||+++
T Consensus 193 ~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v 272 (366)
T cd03822 193 LLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVV 272 (366)
T ss_pred eccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEE
Confidence 99999999999999999998888999999998876433221 26677765 889988 66555 9999999999
Q ss_pred eccCCC--cchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-----HHHHhcC
Q 007215 441 NPSISD--VLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-----PEQRYNL 511 (612)
Q Consensus 441 ~PS~~E--~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-----~~~~~~~ 511 (612)
+||..| ++|++++||||||+|||+++.|+.+++.++.+|+++ +|+++++++|.++++++....+ ......|
T Consensus 273 ~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 352 (366)
T cd03822 273 LPYRSADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAM 352 (366)
T ss_pred ecccccccccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhC
Confidence 999999 999999999999999999999997778788888887 7899999999999954332211 1222349
Q ss_pred CHHHHHHHHHHHHh
Q 007215 512 SWEAATQRFIEYSE 525 (612)
Q Consensus 512 sWe~~~~~~~~~y~ 525 (612)
+|+.++++|.+.|+
T Consensus 353 s~~~~~~~~~~~~~ 366 (366)
T cd03822 353 SWERVAERYLRLLA 366 (366)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999874
No 40
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=1.4e-29 Score=269.16 Aligned_cols=265 Identities=16% Similarity=0.170 Sum_probs=197.1
Q ss_pred HhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEE
Q 007215 243 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLR 321 (612)
Q Consensus 243 l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~ 321 (612)
+...+.+.+||+||++..... +.. ....++.+ |++.++|+............. ........++.+.+ .+|.+++
T Consensus 74 ~~~~~~~~~~dvvh~~~~~~~-~~~--~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~d~ii~ 148 (367)
T cd05844 74 LRRLLRRHRPDLVHAHFGFDG-VYA--LPLARRLGVPLVVTFHGFDATTSLALLLRS-RWALYARRRRRLAR-RAALFIA 148 (367)
T ss_pred HHHHHHhhCCCEEEeccCchH-HHH--HHHHHHcCCCEEEEEeCccccccchhhccc-chhHHHHHHHHHHH-hcCEEEE
Confidence 444566789999999765432 222 23455666 999999964322111111000 02222334444333 5899999
Q ss_pred eChhhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC
Q 007215 322 LSAATQD------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG 394 (612)
Q Consensus 322 ~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~ 394 (612)
+|+.+++ ++..++.++ ||+|.+.+.+... ....+.++|+|++.+.||++.+++|++.+.++.++
T Consensus 149 ~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~~---------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~ 219 (367)
T cd05844 149 VSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATP---------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPE 219 (367)
T ss_pred CCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCCC---------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCC
Confidence 9998766 234567777 8999877654311 12346899999999999999999999999888889
Q ss_pred eEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccC------CCcchHHHHHHHHcCCcEEe
Q 007215 395 FKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSI------SDVLCTATAEALAMGKFVIC 464 (612)
Q Consensus 395 ~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~------~E~fgl~llEAMA~G~PVVa 464 (612)
++|+++|.|+..++++++++++++. +.|+|.+++.+ ++++.||++|+||. .|+||++++||||||+|||+
T Consensus 220 ~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~ 299 (367)
T cd05844 220 VRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVA 299 (367)
T ss_pred eEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEE
Confidence 9999999998888899999987764 99999987666 99999999999997 59999999999999999999
Q ss_pred eCCCCccc-cccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHH
Q 007215 465 ADHPSNEF-FRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIE 522 (612)
Q Consensus 465 s~~gg~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~ 522 (612)
++.++..+ +.++.+|+++ +|+++++++|.+++++ ++.+. ....+.|+|+..++++.+
T Consensus 300 s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 300 TRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLAD-PDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred eCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 99998654 5567888888 6999999999999954 43222 234567999999988764
No 41
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=3.7e-29 Score=263.98 Aligned_cols=268 Identities=18% Similarity=0.193 Sum_probs=198.8
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhcc---chhHHHHHHHHHHHHHHhcCCeEEEeCh
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKN---GALQAFFVKHINNWVTRAYCDKVLRLSA 324 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~ad~vI~~S~ 324 (612)
..+||+||++.+....... +....++.+ |++..+|+.++........ ..........+++...+ .+|.++++|+
T Consensus 97 ~~~~D~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~~s~ 174 (394)
T cd03794 97 RRRPDVIIATSPPLLIALA-ALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYR-RADAIVVISP 174 (394)
T ss_pred ccCCCEEEEcCChHHHHHH-HHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHh-cCCEEEEECH
Confidence 6789999998855443332 233444446 9999999877655432211 11111344555555554 6899999999
Q ss_pred hhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEE
Q 007215 325 ATQD------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKL 397 (612)
Q Consensus 325 ~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~L 397 (612)
..++ .+..++.++ ||+|...+.+......+.+......+..++|+|++.+.||++.+++++.++.+. +++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l 253 (394)
T cd03794 175 GMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRF 253 (394)
T ss_pred HHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhhhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEE
Confidence 7655 234667777 799977665543222123333445677899999999999999999999999877 88999
Q ss_pred EEEecCCCHHHHHHHHHHcCCc-eEEecCCCCHH--HHHhccceEEeccCCCcc-----hHHHHHHHHcCCcEEeeCCCC
Q 007215 398 DVFGNGEDAYEVQSAAKRLDLN-LNFQKGRDHAD--DSLHGYKVFINPSISDVL-----CTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 398 vIvG~g~~~~~l~~~~~~l~l~-v~f~g~~~~~~--~ll~~aDv~V~PS~~E~f-----gl~llEAMA~G~PVVas~~gg 469 (612)
+++|.|+..+.+++.+...++. +.|+|.+++.+ ++++.||++++||..|++ |++++|||+||+|||+++.++
T Consensus 254 ~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~ 333 (394)
T cd03794 254 LIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE 333 (394)
T ss_pred EEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCC
Confidence 9999999988888877777666 99999887666 999999999999998875 888999999999999999998
Q ss_pred ccc-cccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHH
Q 007215 470 NEF-FRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRF 520 (612)
Q Consensus 470 ~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~ 520 (612)
..+ +.++.+|+++ +|+++++++|.+++.+ +..+. +...+.|+|+.++++|
T Consensus 334 ~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 334 SAELVEEAGAGLVVPPGDPEALAAAILELLDD-PEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred chhhhccCCcceEeCCCCHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 554 4445788887 6999999999999944 43332 3334478999888876
No 42
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.97 E-value=9.9e-29 Score=256.56 Aligned_cols=327 Identities=17% Similarity=0.133 Sum_probs=227.9
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 220 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~~ 220 (612)
||++++..+.| .|| +.+.+..++ +|++. ||+|+|+... ... ...+ .....
T Consensus 1 kI~i~~~~~~~-~gG-~~~~~~~l~~~L~~~--------------g~~v~v~~~~--~~~--~~~~---------~~~~~ 51 (348)
T cd03820 1 KILFVIPSLGN-AGG-AERVLSNLANALAEK--------------GHEVTIISLD--KGE--PPFY---------ELDPK 51 (348)
T ss_pred CeEEEeccccC-CCC-hHHHHHHHHHHHHhC--------------CCeEEEEecC--CCC--CCcc---------ccCCc
Confidence 69999998877 455 777777777 89888 8888873220 010 0000 00011
Q ss_pred ceecccCCCc-ccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccch
Q 007215 221 FKISFYPGKF-SKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA 298 (612)
Q Consensus 221 ~~i~~~~~~y-~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~ 298 (612)
+.+...+... ............+.+.+.+.+||+|+++.+....+.. ...... |++...|.........
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~----- 122 (348)
T cd03820 52 IKVIDLGDKRDSKLLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFLA----SLGLKIVKLIVSEHNSPDAYKKR----- 122 (348)
T ss_pred cceeecccccccchhccccchHHHHHhhcccCCCEEEEcCchHHHHHH----HHhhccccEEEecCCCccchhhh-----
Confidence 1111111100 0111222344567777888999999998876322222 222223 7888888775443311
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEeChhhhc----cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccC
Q 007215 299 LQAFFVKHINNWVTRAYCDKVLRLSAATQD----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMV 373 (612)
Q Consensus 299 ~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~ 373 (612)
......++...+ .+|.++++|+..+. ....++.++ ||++...+.+. ....++.++|+|++.
T Consensus 123 ---~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~i~~~g~~~ 188 (348)
T cd03820 123 ---LRRLLLRRLLYR-RADAVVVLTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS----------SDLKSKRILAVGRLV 188 (348)
T ss_pred ---hHHHHHHHHHHh-cCCEEEEeCHHHHHHhhccCCCCeEEecCCcChhhcccc----------CCCCCcEEEEEEeec
Confidence 111113444344 68999999997632 334667777 89987655433 123457899999999
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHH
Q 007215 374 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTA 451 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~ 451 (612)
+.||++.++++++++.+..++++|+++|.+++...++++++++++. +.|.|...+..++++.||++++||..|+||++
T Consensus 189 ~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~ 268 (348)
T cd03820 189 PQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMV 268 (348)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHH
Confidence 9999999999999998888999999999999998898888888875 88888866667999999999999999999999
Q ss_pred HHHHHHcCCcEEeeCCC-Ccccccc-CCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHH
Q 007215 452 TAEALAMGKFVICADHP-SNEFFRS-FPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFI 521 (612)
Q Consensus 452 llEAMA~G~PVVas~~g-g~~~i~~-~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~ 521 (612)
++|||+||+|||+++.+ +.+++.. +.+|+++ .|+++++++|.++++ +++.++ ....+.|+|++++++|.
T Consensus 269 ~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 269 LLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLME-DEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 99999999999999976 4555555 4589888 788999999999994 444332 33456699999988875
No 43
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=1.2e-28 Score=258.04 Aligned_cols=274 Identities=20% Similarity=0.241 Sum_probs=211.4
Q ss_pred HhHhhhcc--CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 241 GDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 241 ~~l~~~l~--~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
..+...+. ..+||+||++.+....... ....+..+ |++..+|+........ ........+.... .+|
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~-------~~~~~~~~~~~~~-~~d 150 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAA--ALLKRKLGIPLVVTLHGSDVNLLPR-------KRLLRALLRRALR-RAD 150 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHH--HHHHHhcCCCEEEEeecchhcccCc-------hhhHHHHHHHHHh-cCC
Confidence 44666776 7899999998655444443 34445555 9999999876543311 1122333343333 589
Q ss_pred eEEEeChhhhc----c--CCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhc
Q 007215 318 KVLRLSAATQD----L--PKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN 390 (612)
Q Consensus 318 ~vI~~S~~~~~----~--~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~ 390 (612)
.++++|+..++ . +..++.++ ||+|...+.+...... .+......++.++|+|++.+.||++.++++++.+.+
T Consensus 151 ~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~ 229 (377)
T cd03798 151 AVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA-RKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLK 229 (377)
T ss_pred eEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH-HhccCCCCceEEEEeccCccccCHHHHHHHHHHHHh
Confidence 99999997765 2 55677777 7999887766533222 223334556789999999999999999999999988
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 391 DLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 391 ~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+.++++++++|.+++.+.+++.++++++. |.+.|.+++.+ ++++.||++++||..|++|++++|||+||+|||+++
T Consensus 230 ~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~ 309 (377)
T cd03798 230 KRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATD 309 (377)
T ss_pred cCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEec
Confidence 88899999999999888888888877765 88999998776 999999999999999999999999999999999999
Q ss_pred CCCccc-cccCCcEEec--CCHHHHHHHHHHHHhCCCC----CCCHHHHhcCCHHHHHHHHHHHHh
Q 007215 467 HPSNEF-FRSFPNCLTY--KTSEDFVARVKEALANDPQ----PLTPEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 467 ~gg~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~~----~~~~~~~~~~sWe~~~~~~~~~y~ 525 (612)
.++..+ +.++.+|+++ .|+++++++|.+++++... .........|+|+..++++.+.|+
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 310 VGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred CCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHHHHhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 998554 4456667777 7999999999999955442 122555677999999999999987
No 44
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.6e-29 Score=279.28 Aligned_cols=265 Identities=15% Similarity=0.135 Sum_probs=201.1
Q ss_pred CCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHH--hc----cchhHHHH---HHHHHHHHHHhcCCeE
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR--EK----NGALQAFF---VKHINNWVTRAYCDKV 319 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~--~~----~~~~~~~~---~~~i~~~~~~~~ad~v 319 (612)
.++|++|++++...++.. ...+++.+ |+|.+.|+.+...... .. ........ .+.+.+...+ .||.|
T Consensus 172 ~~~dviH~~s~~~~g~~~--~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLG--ALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQ-AADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHH--HHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH-hCCEE
Confidence 479999998765444443 45566667 9999999987532110 00 11111111 2233333333 59999
Q ss_pred EEeChhhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccC
Q 007215 320 LRLSAATQD------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDL 392 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~ 392 (612)
+++|+..++ .+++++.+| ||+|.+.|.+.... ...++.++++|+||+.+.||++.+++|++.+.++.
T Consensus 249 i~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~ 322 (475)
T cd03813 249 TTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRA------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKI 322 (475)
T ss_pred EecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCcccc------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC
Confidence 999997655 344678787 89998877654321 12244679999999999999999999999999888
Q ss_pred CCeEEEEEecCCC----HHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 393 DGFKLDVFGNGED----AYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 393 ~~~~LvIvG~g~~----~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
|+++++|+|.++. .++++++++++++. |.|+| ..+..++++.+|++|+||..|+||++++||||||+|||+|+
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd 401 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATD 401 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECC
Confidence 9999999999853 25677888899885 99999 66777999999999999999999999999999999999999
Q ss_pred CCCccccccC-------CcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHh
Q 007215 467 HPSNEFFRSF-------PNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 467 ~gg~~~i~~~-------~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
.|+..+++.+ .+|+++ .|+++++++|.+++++ ++.++ ....+.|+|++++++|.+.|+
T Consensus 402 ~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~-~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 402 VGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD-PELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred CCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9986655544 478877 8999999999999954 44333 334567999999999999985
No 45
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.97 E-value=1.8e-29 Score=272.56 Aligned_cols=207 Identities=15% Similarity=0.122 Sum_probs=160.1
Q ss_pred cCCeEEEeChhhhc-cC---CCcEEEe-CCCCCCCCCCCccchh--hhhhccCCCCcEEEEEec-cCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAATQD-LP---KSVICNV-HGVNPKFLQIGEKVAT--DREQGQQAFSKGAYFLGK-MVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~~~~-~~---~~~i~vi-nGVd~~~f~~~~~~~~--~~~~~~~~~~~~il~vGr-l~~~Kg~~~Li~A~~ 386 (612)
.||.+|++|+..++ ++ .+++.+| ||+|++.|.+...... .....+.+++++++|+|| +.+.||++.+++|+.
T Consensus 156 ~ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~ 235 (396)
T cd03818 156 QADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALP 235 (396)
T ss_pred hCCEEECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHH
Confidence 58999999998766 32 2678778 8999988876533221 112223456678999998 999999999999999
Q ss_pred HhhccCCCeEEEEEecCCC---------HHHHHHHHHHcC----Cc-eEEecCCCCHH--HHHhccceEEeccCCCcchH
Q 007215 387 KHKNDLDGFKLDVFGNGED---------AYEVQSAAKRLD----LN-LNFQKGRDHAD--DSLHGYKVFINPSISDVLCT 450 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~---------~~~l~~~~~~l~----l~-v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl 450 (612)
++.++.|+++|+|+|++.. ....+++.++++ .+ |.|+|.+++.+ ++++.||++|+||..|++|+
T Consensus 236 ~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~ 315 (396)
T cd03818 236 RLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSW 315 (396)
T ss_pred HHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccch
Confidence 9988889999999997421 112223333333 33 99999998776 89999999999999999999
Q ss_pred HHHHHHHcCCcEEeeCCCCcccc-ccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHH
Q 007215 451 ATAEALAMGKFVICADHPSNEFF-RSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRF 520 (612)
Q Consensus 451 ~llEAMA~G~PVVas~~gg~~~i-~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~ 520 (612)
+++||||||+|||+|+.|+..++ .++.+|+++ +|+++++++|.+++++ ++.+. +...+.|+|+.++++|
T Consensus 316 ~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~l~~~ar~~~~~~fs~~~~~~~~ 394 (396)
T cd03818 316 SLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDD-PARRARLRRAARRTALRYDLLSVCLPRQ 394 (396)
T ss_pred HHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999986555 456899988 7999999999999954 43322 3334569999999888
Q ss_pred HH
Q 007215 521 IE 522 (612)
Q Consensus 521 ~~ 522 (612)
++
T Consensus 395 ~~ 396 (396)
T cd03818 395 LA 396 (396)
T ss_pred hC
Confidence 63
No 46
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.97 E-value=1.6e-28 Score=259.39 Aligned_cols=250 Identities=19% Similarity=0.180 Sum_probs=188.2
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCe
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~ 318 (612)
...+.+.+.+.+||+||++.+.. .+.. ..+.+..+ |++.++|+.+.... ..+.+.+ .+|.
T Consensus 67 ~~~l~~~~~~~~~dii~~~~~~~-~~~~--~~~~~~~~~~~i~~~h~~~~~~~---------------~~~~~~~-~~~~ 127 (355)
T cd03819 67 VARLRRLIREEKVDIVHARSRAP-AWSA--YLAARRTRPPFVTTVHGFYSVNF---------------RYNAIMA-RGDR 127 (355)
T ss_pred HHHHHHHHHHcCCCEEEECCCch-hHHH--HHHHHhcCCCEEEEeCCchhhHH---------------HHHHHHH-hcCE
Confidence 34566677788999999987543 2332 23444556 99999998754321 1111122 5899
Q ss_pred EEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCccch-----hhhhhccCCCCcEEEEEeccCCccCHHHHHHHH
Q 007215 319 VLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEKVA-----TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLL 385 (612)
Q Consensus 319 vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~~~-----~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~ 385 (612)
++++|+.+.+ ++.+++.++ ||+|++.+.+..... .+.+++.+++.++++|+||+.+.||++.+++++
T Consensus 128 vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~ 207 (355)
T cd03819 128 VIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEAL 207 (355)
T ss_pred EEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHH
Confidence 9999997655 234577777 899988776543211 234445566678999999999999999999999
Q ss_pred HHhhccCCCeEEEEEecCCCHHH----HHHHHHHcCCc--eEEecCCCCHHHHHhccceEEecc-CCCcchHHHHHHHHc
Q 007215 386 AKHKNDLDGFKLDVFGNGEDAYE----VQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPS-ISDVLCTATAEALAM 458 (612)
Q Consensus 386 ~~l~~~~~~~~LvIvG~g~~~~~----l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS-~~E~fgl~llEAMA~ 458 (612)
..++++.++++++++|.++..+. +.+.++++++. |.|+|..++..++++.||++++|| ..|+||++++|||||
T Consensus 208 ~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~ 287 (355)
T cd03819 208 ARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAM 287 (355)
T ss_pred HHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhc
Confidence 99988878999999999876533 34566777764 999999777789999999999999 789999999999999
Q ss_pred CCcEEeeCCCCccccc-cCCcEEec--CCHHHHHHHHHHHHhCCCCCCCHHHH
Q 007215 459 GKFVICADHPSNEFFR-SFPNCLTY--KTSEDFVARVKEALANDPQPLTPEQR 508 (612)
Q Consensus 459 G~PVVas~~gg~~~i~-~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~~~~~ 508 (612)
|+|||+++.|+..+++ ++.+|+++ +|+++++++|..++..+++.+.++.+
T Consensus 288 G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 340 (355)
T cd03819 288 GRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFA 340 (355)
T ss_pred CCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999865554 45688887 89999999998777566654444443
No 47
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=1.4e-28 Score=266.76 Aligned_cols=277 Identities=14% Similarity=0.015 Sum_probs=195.0
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEE-EEeCCcHhHHHHhccchhHHHHHHHHHH-HHHHhcC
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVG-VVHTNYLEYIKREKNGALQAFFVKHINN-WVTRAYC 316 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~-~~H~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~a 316 (612)
...+...+++.+|||||++........ ...+...+ |++. ..|..+.....+ ....-...+.+ ......+
T Consensus 269 ~~~l~~~ir~~rpDIVHt~~~~a~l~g---~laA~lagvpviv~~~h~~~~~~~~r-----~~~~e~~~~~~a~~i~~~s 340 (578)
T PRK15490 269 IKHLVPHLCERKLDYLSVWQDGACLMI---ALAALIAGVPRIQLGLRGLPPVVRKR-----LFKPEYEPLYQALAVVPGV 340 (578)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccHHHH---HHHHHhcCCCEEEEeecccCCcchhh-----HHHHHHHHhhhhceeEecc
Confidence 355777788999999999875532111 22333345 7753 455522211100 00000011111 1111123
Q ss_pred CeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCccc--hhhh--hhccCCCCcEEEEEeccCCccCHHHHHHH
Q 007215 317 DKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEKV--ATDR--EQGQQAFSKGAYFLGKMVWAKGYRELIDL 384 (612)
Q Consensus 317 d~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~~--~~~~--~~~~~~~~~~il~vGrl~~~Kg~~~Li~A 384 (612)
| +++.|..+.+ ++.+++.+| ||||++.|.+.... ..+. ..+.+++.++++++||+.+.||+..++++
T Consensus 341 d-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A 419 (578)
T PRK15490 341 D-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDF 419 (578)
T ss_pred h-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHH
Confidence 4 5666665433 456788888 99999877764321 1122 22334556789999999999999999999
Q ss_pred HHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcE
Q 007215 385 LAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFV 462 (612)
Q Consensus 385 ~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PV 462 (612)
+.++.++.|+++|+|+|+|+..++++++++++++. |.|+|...+..++|+.+|+||+||.+|+||++++||||||+||
T Consensus 420 ~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPV 499 (578)
T PRK15490 420 AARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPV 499 (578)
T ss_pred HHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCE
Confidence 99988888999999999999999999999999975 9999998888899999999999999999999999999999999
Q ss_pred EeeCCCCcc-ccccCCcEEec--CCHHHHHHHHH---HHHhCCCCC------CCHHHHhcCCHHHHHHHHHHHHh
Q 007215 463 ICADHPSNE-FFRSFPNCLTY--KTSEDFVARVK---EALANDPQP------LTPEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 463 Vas~~gg~~-~i~~~~~g~l~--~d~~~la~aI~---~ll~~~~~~------~~~~~~~~~sWe~~~~~~~~~y~ 525 (612)
|+|+.||.. .+.++.+|+++ .|++++++++. ++......+ .+....+.|||+.++++|.+.|.
T Consensus 500 VATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~ 574 (578)
T PRK15490 500 ISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIA 574 (578)
T ss_pred EEeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 999999855 56678999998 77777777663 222111111 11345678999999999999998
No 48
>PLN00142 sucrose synthase
Probab=99.97 E-value=4.3e-29 Score=281.93 Aligned_cols=272 Identities=11% Similarity=0.141 Sum_probs=189.7
Q ss_pred CCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccch---hHH--HHH-HHHHHHHHHhcCCeEEEe
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA---LQA--FFV-KHINNWVTRAYCDKVLRL 322 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~---~~~--~~~-~~i~~~~~~~~ad~vI~~ 322 (612)
.+||+||+|.+.. ++.+ ...+++++ |.+.+.|+.-...... .... ... .+. +..........||.||+.
T Consensus 407 ~~PDlIHaHYwds-g~vA--~~La~~lgVP~v~T~HsL~k~K~~~-~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIas 482 (815)
T PLN00142 407 GKPDLIIGNYSDG-NLVA--SLLAHKLGVTQCTIAHALEKTKYPD-SDIYWKKFDDKYHFSCQFTADLIAMNHADFIITS 482 (815)
T ss_pred CCCCEEEECCccH-HHHH--HHHHHHhCCCEEEEcccchhhhccc-cCCcccccchhhhhhhchHHHHHHHHhhhHHHhC
Confidence 4699999996653 3333 56788888 9999999763221110 0000 001 111 111222333368999988
Q ss_pred Chhhhc----------------------------cCCCcEEEe-CCCCCCCCCCCccch-------------------hh
Q 007215 323 SAATQD----------------------------LPKSVICNV-HGVNPKFLQIGEKVA-------------------TD 354 (612)
Q Consensus 323 S~~~~~----------------------------~~~~~i~vi-nGVd~~~f~~~~~~~-------------------~~ 354 (612)
|..... ....++.++ ||+|...|.|..... ..
T Consensus 483 T~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~ 562 (815)
T PLN00142 483 TYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQND 562 (815)
T ss_pred cHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHH
Confidence 864321 013467778 799988665432111 11
Q ss_pred hhhcc--CCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC------H------HHHHHHHHHcCCc-
Q 007215 355 REQGQ--QAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED------A------YEVQSAAKRLDLN- 419 (612)
Q Consensus 355 ~~~~~--~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~------~------~~l~~~~~~l~l~- 419 (612)
+.++. .+++++|+++||+.+.||++.||+|+.++.+..++++|+|+|++.+ . ..+.++++++++.
T Consensus 563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~ 642 (815)
T PLN00142 563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKG 642 (815)
T ss_pred HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCC
Confidence 23443 4557799999999999999999999998877667899999998721 1 3466788899886
Q ss_pred -eEEecCCCC---HHHHH---h-ccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-cccccCCcEEec--CCHHHH
Q 007215 420 -LNFQKGRDH---ADDSL---H-GYKVFINPSISDVLCTATAEALAMGKFVICADHPSN-EFFRSFPNCLTY--KTSEDF 488 (612)
Q Consensus 420 -v~f~g~~~~---~~~ll---~-~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-~~i~~~~~g~l~--~d~~~l 488 (612)
|.|+|...+ .++++ + .+|+||+||.+|+||++++||||||+|||+|+.||. +.|.++.+|+++ .|++++
T Consensus 643 ~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaL 722 (815)
T PLN00142 643 QFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEA 722 (815)
T ss_pred cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHH
Confidence 888886543 23344 3 469999999999999999999999999999999995 556678999998 799999
Q ss_pred HHHHHHHHh---CCCCCCCH-------HHHhcCCHHHHHHHHHHHHh
Q 007215 489 VARVKEALA---NDPQPLTP-------EQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 489 a~aI~~ll~---~~~~~~~~-------~~~~~~sWe~~~~~~~~~y~ 525 (612)
+++|.+++. .++..+.+ ...+.|+|+.+++++++...
T Consensus 723 A~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~ 769 (815)
T PLN00142 723 ANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGG 769 (815)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999987652 45544442 23357999999999999775
No 49
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.97 E-value=1.8e-28 Score=266.56 Aligned_cols=239 Identities=14% Similarity=0.110 Sum_probs=175.8
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcH----hHHHHh--c-----------cch---hHH----HH
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL----EYIKRE--K-----------NGA---LQA----FF 303 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~----~~~~~~--~-----------~~~---~~~----~~ 303 (612)
+.+|||++.+....+.+.. ...+. + |+++.+| |+ +..... + ... ... +.
T Consensus 105 ~~~pDv~i~~~g~~~~~~~-~~~~~---~~~~i~y~h--~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~ 178 (419)
T cd03806 105 KLVPDIFIDTMGYPFTYPL-VRLLG---GCPVGAYVH--YPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRL 178 (419)
T ss_pred hcCCCEEEEcCCcccHHHH-HHHhc---CCeEEEEec--CCcchHHHHHHHhhccccccCccchhccchHHHHHHHHHHH
Confidence 4579999988755444443 11122 4 9999999 44 322111 0 001 111 11
Q ss_pred HHHHHHHHHHhcCCeEEEeChhhhc-----cCC-CcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCcc
Q 007215 304 VKHINNWVTRAYCDKVLRLSAATQD-----LPK-SVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAK 376 (612)
Q Consensus 304 ~~~i~~~~~~~~ad~vI~~S~~~~~-----~~~-~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~K 376 (612)
...++++..+ .||.++++|+.+++ +.. +++.++ ||+|.+.+.+.... ....++.++|+||+.++|
T Consensus 179 ~~~~~~~~~~-~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~-------~~~~~~~il~vgr~~~~K 250 (419)
T cd03806 179 FAFLYGLAGS-FADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLD-------EKTRENQILSIAQFRPEK 250 (419)
T ss_pred HHHHHHHHhh-cCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhcccccc-------cccCCcEEEEEEeecCCC
Confidence 1234444444 69999999997765 222 266666 89997765443210 123357899999999999
Q ss_pred CHHHHHHHHHHhhccCC-----CeEEEEEecCCC------HHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEe
Q 007215 377 GYRELIDLLAKHKNDLD-----GFKLDVFGNGED------AYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFIN 441 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~~-----~~~LvIvG~g~~------~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~ 441 (612)
|++.+|+|++++.++.+ +++|+|+|++.. .++++++++++++. |+|+|.++..+ ++|+.||++|+
T Consensus 251 ~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~ 330 (419)
T cd03806 251 NHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLH 330 (419)
T ss_pred CHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEE
Confidence 99999999999987665 499999998743 36688888888885 99999988777 99999999999
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeCCCC-ccccc----cCCcEEecCCHHHHHHHHHHHHhCCCC
Q 007215 442 PSISDVLCTATAEALAMGKFVICADHPS-NEFFR----SFPNCLTYKTSEDFVARVKEALANDPQ 501 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~~gg-~~~i~----~~~~g~l~~d~~~la~aI~~ll~~~~~ 501 (612)
||..|+||++++||||||+|||+++.|| .++++ ++.+|+++.|+++++++|.++++++++
T Consensus 331 ~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~ 395 (419)
T cd03806 331 TMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEE 395 (419)
T ss_pred CCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999876 44555 588999999999999999999965543
No 50
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.96 E-value=8.5e-29 Score=260.82 Aligned_cols=340 Identities=16% Similarity=0.108 Sum_probs=226.4
Q ss_pred eEEEEeCCCCC-CcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCC
Q 007215 142 NVAIVTTASLP-WMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFK 218 (612)
Q Consensus 142 kI~ivt~~~~P-~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~ 218 (612)
||++++..+.| ..|| +.+.+..++ +|++. ||+|+++ +... ......... ....
T Consensus 1 ~ili~~~~~~~~~~gG-~~~~~~~l~~~L~~~--------------~~~v~~~~~~~~-~~~~~~~~~--------~~~~ 56 (365)
T cd03809 1 RILIDARFLASRRPTG-IGRYARELLRALLKL--------------DPEEVLLLLPGA-PGLLLLPLR--------AALR 56 (365)
T ss_pred CEEEechhhhcCCCCc-HHHHHHHHHHHHHhc--------------CCceEEEEecCc-cccccccch--------hccc
Confidence 68999999988 5566 888888888 99998 8887772 2210 011000000 0000
Q ss_pred CCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccc
Q 007215 219 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG 297 (612)
Q Consensus 219 ~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~ 297 (612)
. . ......................+.+.++|+||++.+..... +..+ |++.++|+.++........
T Consensus 57 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~--------~~~~~~~i~~~hd~~~~~~~~~~~- 123 (365)
T cd03809 57 L---L-LRLPRRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL--------RLRGVPVVVTIHDLIPLRFPEYFS- 123 (365)
T ss_pred c---c-cccccccccchhhHHHHHHHHHhhhcCCCeeeecccccCcc--------cCCCCCEEEEeccchhhhCcccCC-
Confidence 0 0 00000000111111223333444457899999977654321 3344 9999999876543322111
Q ss_pred hhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----c--CCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEE
Q 007215 298 ALQAFFVKHINNWVTRAYCDKVLRLSAATQD-----L--PKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFL 369 (612)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~--~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~v 369 (612)
...........+...+ .+|.++++|+.+++ + +.+++.++ ||+|...+....... ........+++.++|+
T Consensus 124 ~~~~~~~~~~~~~~~~-~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~ 201 (365)
T cd03809 124 PGFRRYFRRLLRRALR-RADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE-VLRALYLLPRPYFLYV 201 (365)
T ss_pred HHHHHHHHHHHHHHHH-HcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH-HHHHhcCCCCCeEEEe
Confidence 1112233344444444 58999999997655 2 24567777 799988776543322 2333444567899999
Q ss_pred eccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccC
Q 007215 370 GKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSI 444 (612)
Q Consensus 370 Grl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~ 444 (612)
|++.+.||++.+++++..+.+..++++++++|.+... .......++++.. |.++|.+++.+ ++++.||++++||.
T Consensus 202 G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~ 281 (365)
T cd03809 202 GTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL 281 (365)
T ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch
Confidence 9999999999999999999988778999999986654 3333333445554 89999998776 99999999999999
Q ss_pred CCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHH
Q 007215 445 SDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAA 516 (612)
Q Consensus 445 ~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~ 516 (612)
.|++|++++||||+|+|||+++.|+..++.+. +|+++ .|+++++++|.+++++ ++... ......|+|++.
T Consensus 282 ~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~sw~~~ 359 (365)
T cd03809 282 YEGFGLPVLEAMACGTPVIASNISSLPEVAGD-AALYFDPLDPEALAAAIERLLED-PALREELRERGLARAKRFSWEKT 359 (365)
T ss_pred hccCCCCHHHHhcCCCcEEecCCCCccceecC-ceeeeCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999987666643 45554 8899999999999844 43322 223577999999
Q ss_pred HHHHHH
Q 007215 517 TQRFIE 522 (612)
Q Consensus 517 ~~~~~~ 522 (612)
++++.+
T Consensus 360 ~~~~~~ 365 (365)
T cd03809 360 ARRTLD 365 (365)
T ss_pred HHHHhC
Confidence 998863
No 51
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.96 E-value=3.8e-28 Score=262.40 Aligned_cols=269 Identities=13% Similarity=0.099 Sum_probs=188.8
Q ss_pred HhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhc--cchhHH-------HHHHHHHHHHH
Q 007215 243 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREK--NGALQA-------FFVKHINNWVT 312 (612)
Q Consensus 243 l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~--~~~~~~-------~~~~~i~~~~~ 312 (612)
+.+.+.+.++|+||++.+....+.. ....+ |.|...|+...+...... ...... .....+++.+.
T Consensus 96 l~~~~~~~~~D~v~~~~~~~~~~~~-----~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 170 (397)
T TIGR03087 96 VNALLAAEPVDAIVVFSSAMAQYVT-----PHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERAIA 170 (397)
T ss_pred HHHHHhhCCCCEEEEeccccceecc-----ccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 4455567899999997654322211 12234 888888875332211110 001111 12234555555
Q ss_pred HhcCCeEEEeChhhhc----c---CCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHH--
Q 007215 313 RAYCDKVLRLSAATQD----L---PKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELI-- 382 (612)
Q Consensus 313 ~~~ad~vI~~S~~~~~----~---~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li-- 382 (612)
+ .+|.++++|+..++ . ..+++.++ ||||+++|.+..... . ...+++++++|+|++.+.||++.++
T Consensus 171 ~-~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~--~--~~~~~~~~ilf~G~l~~~k~~~~l~~~ 245 (397)
T TIGR03087 171 A-RFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYP--N--PYPPGKRVLVFTGAMDYWPNIDAVVWF 245 (397)
T ss_pred h-hCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCcccc--C--CCCCCCcEEEEEEecCCccCHHHHHHH
Confidence 4 68999999997655 1 23567777 899998886643211 1 1123457899999999999999988
Q ss_pred --HHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC-CCcchHHHHHHHHcC
Q 007215 383 --DLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI-SDVLCTATAEALAMG 459 (612)
Q Consensus 383 --~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~-~E~fgl~llEAMA~G 459 (612)
++++.+.++.|+++|+|+|+|+.. .++++... ..|.|+|.+++..++++.||++|+||. .||+|++++||||||
T Consensus 246 ~~~~~~~l~~~~p~~~l~ivG~g~~~-~~~~l~~~--~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G 322 (397)
T TIGR03087 246 AERVFPAVRARRPAAEFYIVGAKPSP-AVRALAAL--PGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMA 322 (397)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCChH-HHHHhccC--CCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcC
Confidence 556667777799999999998863 34443322 239999999988899999999999997 499999999999999
Q ss_pred CcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHh
Q 007215 460 KFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 460 ~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+|||+|+.++..+...+.+|+++ +|+++++++|.+++++ ++.+. +...+.|+|+++++++.+.|+
T Consensus 323 ~PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~-~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 323 KPVVASPEAAEGIDALPGAELLVAADPADFAAAILALLAN-PAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred CCEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999998654443344567776 8999999999999954 43222 334567999999999999887
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.96 E-value=1.5e-28 Score=257.69 Aligned_cols=332 Identities=18% Similarity=0.162 Sum_probs=222.3
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCch-hHHHHHHHHHHhhhCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPE-EQENYMRNWLEERVGFK 218 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~-~~~~~~~~w~~~~v~~~ 218 (612)
||+++++.|+|..+||+.+.+..++ +|+++ ||+|.|+ +........ ..... .....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~--------------g~~v~v~~~~~~~~~~~~~~~~~-------~~~~~ 59 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKR--------------GHEVAVLTAGEDPPRQDKEVIGV-------VVYGR 59 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhc--------------CCceEEEeCCCCCCCcccccccc-------eeecc
Confidence 6999999999987777888888777 89988 8888873 221000000 00000 00000
Q ss_pred CCceecccCCCccc------ccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHH
Q 007215 219 ADFKISFYPGKFSK------ERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYI 291 (612)
Q Consensus 219 ~~~~i~~~~~~y~~------~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~ 291 (612)
.. .......... ..........+.+.+.+.+||+||++.+..+.... ..+.++.+ |++.++|+.+....
T Consensus 60 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~--~~~~~~~~~~~i~~~hd~~~~~~ 135 (359)
T cd03823 60 PI--DEVLRSALPRDLFHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSI--LRAARDRGIPIVLTLHDYWLICP 135 (359)
T ss_pred cc--ccccCCCchhhhhHHHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHH--HHHHHhcCCCEEEEEeeeeeecc
Confidence 00 0000000000 00011112345566667899999998875443332 23445556 99999997653221
Q ss_pred HHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCc
Q 007215 292 KREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSK 364 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~ 364 (612)
.. . .. ....|.++++|+...+ ..+.++.++ ||+|...+.+... ..+..++
T Consensus 136 ~~-------~--------~~-~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~-------~~~~~~~ 192 (359)
T cd03823 136 RQ-------G--------LF-KKGGDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR-------APPGGRL 192 (359)
T ss_pred hh-------h--------hh-ccCCCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhcccccc-------CCCCCce
Confidence 11 0 00 0023899999997655 223567777 8999877654322 2234567
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEec
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINP 442 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~P 442 (612)
+++|+|++.+.||++.++++++++.+ ++++|+++|.++......... .....+.++|.++..+ ++++.||++++|
T Consensus 193 ~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ad~~i~p 269 (359)
T cd03823 193 RFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLELEEESYEL-EGDPRVEFLGAYPQEEIDDFYAEIDVLVVP 269 (359)
T ss_pred EEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchhhhHHHHhh-cCCCeEEEeCCCCHHHHHHHHHhCCEEEEc
Confidence 89999999999999999999999876 689999999988775544433 2333499999996555 999999999999
Q ss_pred cC-CCcchHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC---HHHHhcCCHHH
Q 007215 443 SI-SDVLCTATAEALAMGKFVICADHPSNEF-FRSFPNCLTY--KTSEDFVARVKEALANDPQPLT---PEQRYNLSWEA 515 (612)
Q Consensus 443 S~-~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~---~~~~~~~sWe~ 515 (612)
|. .|++|++++|||+||+|||+|+.++..+ +.++.+|+++ +|+++++++|.++++ +++..+ ....+..+.+.
T Consensus 270 s~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~ 348 (359)
T cd03823 270 SIWPENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLID-DPDLLERLRAGIEPPRSIED 348 (359)
T ss_pred CcccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh-ChHHHHHHHHhHHHhhhHHH
Confidence 98 6999999999999999999999998655 4456688888 789999999999995 444333 22233445588
Q ss_pred HHHHHHHHHh
Q 007215 516 ATQRFIEYSE 525 (612)
Q Consensus 516 ~~~~~~~~y~ 525 (612)
++++|.+.|+
T Consensus 349 ~~~~~~~~~~ 358 (359)
T cd03823 349 QAEEYLKLYR 358 (359)
T ss_pred HHHHHHHHhh
Confidence 8888888886
No 53
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.96 E-value=2e-28 Score=264.66 Aligned_cols=194 Identities=13% Similarity=0.058 Sum_probs=146.8
Q ss_pred CCeEEEeChhhhc-----cCCCcEEEe-CCCCCCCCCCCc-cchhhhhhccCCCCcEEEEEecc--CCccCHHHHHHHHH
Q 007215 316 CDKVLRLSAATQD-----LPKSVICNV-HGVNPKFLQIGE-KVATDREQGQQAFSKGAYFLGKM--VWAKGYRELIDLLA 386 (612)
Q Consensus 316 ad~vI~~S~~~~~-----~~~~~i~vi-nGVd~~~f~~~~-~~~~~~~~~~~~~~~~il~vGrl--~~~Kg~~~Li~A~~ 386 (612)
++.+|++|+.+++ +...++.+| ||||++.+.+.. ....+ .++++++++++|+. .+.||++.|++|+.
T Consensus 191 ~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~ 266 (405)
T PRK10125 191 GCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILAELPPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMM 266 (405)
T ss_pred CcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccccccccccccc----cCCCCCEEEEEEeccccCCccHHHHHHHHH
Confidence 5789999998766 344678778 899964322211 11111 12456789999994 46899999999999
Q ss_pred HhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH---HHHhccceEEeccCCCcchHHHHHHHHcCCcEE
Q 007215 387 KHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD---DSLHGYKVFINPSISDVLCTATAEALAMGKFVI 463 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~---~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVV 463 (612)
.+. ++++|+++|.++... ...+.++|...+.+ ++|+.+|+||+||..|+||++++||||||+|||
T Consensus 267 ~l~---~~~~L~ivG~g~~~~---------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVV 334 (405)
T PRK10125 267 ALG---DKIELHTFGKFSPFT---------AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI 334 (405)
T ss_pred hCC---CCeEEEEEcCCCccc---------ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEE
Confidence 874 478999999876421 12377888776543 788999999999999999999999999999999
Q ss_pred eeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCC-----CCCCHHHHhcCCHHHHHHHHHHHHh
Q 007215 464 CADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDP-----QPLTPEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 464 as~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~-----~~~~~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+|++||.++++++.+|+++ +|+++||+++...+.+.. ...+....+.|+|+.++++|+++|+
T Consensus 335 at~~gG~~Eiv~~~~G~lv~~~d~~~La~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 335 ATHSDAAREVLQKSGGKTVSEEEVLQLAQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred EeCCCChHHhEeCCcEEEECCCCHHHHHhccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999998888876789988 899999987654332210 1122445677999999999999997
No 54
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.96 E-value=5.2e-28 Score=255.92 Aligned_cols=315 Identities=17% Similarity=0.125 Sum_probs=220.3
Q ss_pred ceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 141 RNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 141 ~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
|||++++.. +.. ||+.+....++ +|.++ ||+|+|+.. ...
T Consensus 1 MkIl~~~~~--~~~-gG~~~~~~~l~~~l~~~--------------G~~v~v~~~---~~~------------------- 41 (365)
T cd03825 1 MKVLHLNTS--DIS-GGAARAAYRLHRALQAA--------------GVDSTMLVQ---EKK------------------- 41 (365)
T ss_pred CeEEEEecC--CCC-CcHHHHHHHHHHHHHhc--------------CCceeEEEe---ecc-------------------
Confidence 689999865 333 44777777777 99999 999998422 000
Q ss_pred CceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhh-CC-CEEEEEeCCcHhHHHHh---
Q 007215 220 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDK-FN-HVVGVVHTNYLEYIKRE--- 294 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~-~~-pvv~~~H~~~~~~~~~~--- 294 (612)
.+.+.+...+|||||++.+....+.. ..+.+. .+ |.+.++|+.+.......
T Consensus 42 ----------------------~~~~~~~~~~~diih~~~~~~~~~~~--~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~ 97 (365)
T cd03825 42 ----------------------ALISKIEIINADIVHLHWIHGGFLSI--EDLSKLLDRKPVVWTLHDMWPFTGGCHYPG 97 (365)
T ss_pred ----------------------hhhhChhcccCCEEEEEccccCccCH--HHHHHHHcCCCEEEEcccCcccccccCCcc
Confidence 13345567889999997644222111 111122 25 99999998643211000
Q ss_pred ----------------ccc--hhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCC
Q 007215 295 ----------------KNG--ALQAFFVKHINNWVTRAYCDKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIG 348 (612)
Q Consensus 295 ----------------~~~--~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~ 348 (612)
... .+..+........+ ...++.++++|+.+++ ++..++.++ ||+|++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~ 176 (365)
T cd03825 98 GCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAW-ADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPR 176 (365)
T ss_pred ccccccccCCCCCCCCCCCcccHHHHHHHHHHHHh-ccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCC
Confidence 000 11112222222221 1246789999987655 234677777 89999888766
Q ss_pred ccchhhhhhccCCCCcEEEEEeccCC--ccCHHHHHHHHHHhhcc-CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecC
Q 007215 349 EKVATDREQGQQAFSKGAYFLGKMVW--AKGYRELIDLLAKHKND-LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKG 425 (612)
Q Consensus 349 ~~~~~~~~~~~~~~~~~il~vGrl~~--~Kg~~~Li~A~~~l~~~-~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~ 425 (612)
.....+..++.+++++++++.|+... .||++.+++|++.+.++ .++++++++|.++..... .....+.|+|.
T Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-----~~~~~v~~~g~ 251 (365)
T cd03825 177 DKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-----DLPFPVHYLGS 251 (365)
T ss_pred cHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-----cCCCceEecCC
Confidence 65556666777777777778777655 89999999999998775 578999999988764321 23335899999
Q ss_pred CCCHH---HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccc-cCCcEEec--CCHHHHHHHHHHHHhCC
Q 007215 426 RDHAD---DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCLTY--KTSEDFVARVKEALAND 499 (612)
Q Consensus 426 ~~~~~---~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~-~~~~g~l~--~d~~~la~aI~~ll~~~ 499 (612)
+++.+ ++++.||++++||..|+||++++|||+||+|||+++.|+..++. ++.+|+++ .|+++++++|.+++++
T Consensus 252 ~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~- 330 (365)
T cd03825 252 LNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD- 330 (365)
T ss_pred cCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC-
Confidence 99543 88999999999999999999999999999999999999865544 45688887 6899999999999954
Q ss_pred CCCCC-------HHHHhcCCHHHHHHHHHHHHh
Q 007215 500 PQPLT-------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 500 ~~~~~-------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
++... ......|+|+.++++|.+.|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 331 PDEREELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 43222 234467999999999999997
No 55
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.96 E-value=4e-28 Score=255.81 Aligned_cols=257 Identities=17% Similarity=0.097 Sum_probs=190.7
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.++|+||++.+....... ....+..+ +++.++|......... . ...+...+ .+|.+
T Consensus 69 ~~~~~~~~~~~~Dii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~-~~~~v 134 (355)
T cd03799 69 LVLARELRRLGIDHIHAHFGTTPATVA--MLASRLGGIPYSFTAHGKDIFRSPD-------A----IDLDEKLA-RADFV 134 (355)
T ss_pred HHHHHHHHhcCCCEEEECCCCchHHHH--HHHHHhcCCCEEEEEecccccccCc-------h----HHHHHHHh-hCCEE
Confidence 345555667899999998764333222 12222234 8888888643211100 0 12222222 58999
Q ss_pred EEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhcc
Q 007215 320 LRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND 391 (612)
Q Consensus 320 I~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~ 391 (612)
+++|+..++ ....++.++ ||+|.+.+.+.. ......+..++|+|++.+.||++.+++++.++.++
T Consensus 135 i~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~-------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~ 207 (355)
T cd03799 135 VAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRP-------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDR 207 (355)
T ss_pred EECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCcc-------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhc
Confidence 999997655 233567777 899988776543 01123456899999999999999999999999887
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCC------CcchHHHHHHHHcCCc
Q 007215 392 LDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS------DVLCTATAEALAMGKF 461 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~------E~fgl~llEAMA~G~P 461 (612)
.++++++++|.++..+.+++.++++++. |.|.|.++..+ ++++.||++++||.. |+||++++|||+||+|
T Consensus 208 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~P 287 (355)
T cd03799 208 GIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLP 287 (355)
T ss_pred CCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCC
Confidence 8899999999999999999999888765 89999997665 999999999999999 9999999999999999
Q ss_pred EEeeCCCCcccccc-CCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHH
Q 007215 462 VICADHPSNEFFRS-FPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQR 519 (612)
Q Consensus 462 VVas~~gg~~~i~~-~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~ 519 (612)
||+++.|+.+++.. +.+|+++ +|+++++++|.++++++.. +. +...+.|+|+..+++
T Consensus 288 vi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~-~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 288 VISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPEL-RREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred EEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhcCHHHHhhc
Confidence 99999998665554 5689888 5999999999999955432 22 233456888777654
No 56
>PLN02949 transferase, transferring glycosyl groups
Probab=99.96 E-value=1.8e-27 Score=260.29 Aligned_cols=208 Identities=17% Similarity=0.115 Sum_probs=163.6
Q ss_pred cCCeEEEeChhhhc-----cC-CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHH
Q 007215 315 YCDKVLRLSAATQD-----LP-KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAK 387 (612)
Q Consensus 315 ~ad~vI~~S~~~~~-----~~-~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~ 387 (612)
.||.|++.|+.+++ .. .+++.++ ||+|.+.+...... ..++++.++++||+.++||++.+|+|+++
T Consensus 220 ~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~-------~~~~~~~il~vGR~~~~Kg~~llI~A~~~ 292 (463)
T PLN02949 220 CAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLE-------RSEDPPYIISVAQFRPEKAHALQLEAFAL 292 (463)
T ss_pred CCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCcc-------ccCCCCEEEEEEeeeccCCHHHHHHHHHH
Confidence 58999999998765 22 2456666 89986544221110 01234689999999999999999999988
Q ss_pred hhc----cCCCeEEEEEecCCC---H---HHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHH
Q 007215 388 HKN----DLDGFKLDVFGNGED---A---YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATA 453 (612)
Q Consensus 388 l~~----~~~~~~LvIvG~g~~---~---~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~ll 453 (612)
+.+ +.++++|+|+|++.. . ++++++++++++. |.|+|..+..+ ++|+.||++|+||..|+||++++
T Consensus 293 l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvl 372 (463)
T PLN02949 293 ALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVV 372 (463)
T ss_pred HHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHH
Confidence 764 347899999998742 2 5688889999886 99999997666 99999999999999999999999
Q ss_pred HHHHcCCcEEeeCCCCc-ccc-cc---CCcEEecCCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHHH
Q 007215 454 EALAMGKFVICADHPSN-EFF-RS---FPNCLTYKTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFIE 522 (612)
Q Consensus 454 EAMA~G~PVVas~~gg~-~~i-~~---~~~g~l~~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~~ 522 (612)
||||||+|||+++.||. +++ .+ +.+|+++.|+++++++|.++++++++.+. +...+.|||++.++++.+
T Consensus 373 EAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~ 452 (463)
T PLN02949 373 EYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKD 452 (463)
T ss_pred HHHHcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999984 344 33 56788889999999999999965544322 222356999999999999
Q ss_pred HHhcccccc
Q 007215 523 YSELNRILN 531 (612)
Q Consensus 523 ~y~~~~~~~ 531 (612)
.|+ .+++
T Consensus 453 ~i~--~l~~ 459 (463)
T PLN02949 453 AIR--PILN 459 (463)
T ss_pred HHH--HHHh
Confidence 998 5544
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.96 E-value=2.1e-27 Score=247.63 Aligned_cols=266 Identities=18% Similarity=0.182 Sum_probs=192.2
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhh-hCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTD-KFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~-~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
...+.+.+.+.+||+||++......+.. ...+ ... +++...|......... .........++++..+ .+|
T Consensus 69 ~~~~~~~~~~~~~dvv~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~d 140 (359)
T cd03808 69 LLRLYRLLRKERPDIVHTHTPKPGILGR---LAARLAGVPKVIYTVHGLGFVFTSG----GLKRRLYLLLERLALR-FTD 140 (359)
T ss_pred HHHHHHHHHhcCCCEEEEccccchhHHH---HHHHHcCCCCEEEEecCcchhhccc----hhHHHHHHHHHHHHHh-hcc
Confidence 3456667778899999998654322221 1222 223 7777777764332211 1123444556666555 679
Q ss_pred eEEEeChhhhc-----c-C--CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHh
Q 007215 318 KVLRLSAATQD-----L-P--KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKH 388 (612)
Q Consensus 318 ~vI~~S~~~~~-----~-~--~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l 388 (612)
.++++|+...+ . . ...+.++ +|+|++.+.+.... ....++.++|+|++.+.||++.++++++.+
T Consensus 141 ~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l 213 (359)
T cd03808 141 KVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARIL 213 (359)
T ss_pred EEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHH
Confidence 99999997655 1 1 2344444 68887766544321 123467899999999999999999999999
Q ss_pred hccCCCeEEEEEecCCCHHHHHHH-HHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 389 KNDLDGFKLDVFGNGEDAYEVQSA-AKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 389 ~~~~~~~~LvIvG~g~~~~~l~~~-~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
.++.++++|+++|.++........ +.+.+.. |.|+|...+..++++.||++++||..|+||++++|||+||+|||+|
T Consensus 214 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s 293 (359)
T cd03808 214 KAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIAT 293 (359)
T ss_pred HhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEe
Confidence 887889999999999877555443 4555543 8999997788899999999999999999999999999999999999
Q ss_pred CCCCccc-cccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHH
Q 007215 466 DHPSNEF-FRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFI 521 (612)
Q Consensus 466 ~~gg~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~ 521 (612)
+.++..+ +.++.+|+++ +|+++++++|.+++.++ +... +...+.|+|+.++++|.
T Consensus 294 ~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 294 DVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDP-ELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred cCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9998554 4457888887 68999999999988543 3222 33356789888888775
No 58
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.96 E-value=4.4e-27 Score=244.32 Aligned_cols=310 Identities=17% Similarity=0.138 Sum_probs=212.2
Q ss_pred eEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCCC
Q 007215 142 NVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFKA 219 (612)
Q Consensus 142 kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~~ 219 (612)
||++++..+. +||+.+.+..++ +|.+. ||+|.|+ .............. ..
T Consensus 1 kIl~~~~~~~---~gG~~~~~~~l~~~l~~~--------------g~~v~v~~~~~~~~~~~~~~~~--------~~--- 52 (353)
T cd03811 1 KILFVIPSLG---GGGAERVLLNLANGLDKR--------------GYDVTLVVLRDEGDYLELLPSN--------VK--- 52 (353)
T ss_pred CeEEEeeccc---CCCcchhHHHHHHHHHhc--------------CceEEEEEcCCCCccccccccc--------hh---
Confidence 6899998885 344777777777 89888 8888883 22100000000000 00
Q ss_pred CceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccch
Q 007215 220 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA 298 (612)
Q Consensus 220 ~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~ 298 (612)
........ ............+.+.+.+.+||+||++.+ ...+.. ..+..+.+ |.+..+|+...........
T Consensus 53 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~dii~~~~~-~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 124 (353)
T cd03811 53 LIPVRVLK---LKSLRDLLAILRLRRLLRKEKPDVVISHLT-TTPNVL--ALLAARLGTKLIVWEHNSLSLELKRKLR-- 124 (353)
T ss_pred hhceeeee---cccccchhHHHHHHHHHHhcCCCEEEEcCc-cchhHH--HHHHhhcCCceEEEEcCcchhhhccchh--
Confidence 00000000 000112223345677777889999999876 122221 12222225 9999999987654422110
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----cC--CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEe
Q 007215 299 LQAFFVKHINNWVTRAYCDKVLRLSAATQD-----LP--KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLG 370 (612)
Q Consensus 299 ~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~~--~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vG 370 (612)
. ..+.+.... .+|.++++|+.+++ .. .+++.++ ||+|.+.+.+...... .......++.++|+|
T Consensus 125 --~---~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~g 196 (353)
T cd03811 125 --L---LLLIRKLYR-RADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL--ELGIPPDGPVILAVG 196 (353)
T ss_pred --H---HHHHHhhcc-ccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh--hcCCCCCceEEEEEe
Confidence 0 023333333 58999999997665 22 4667777 8999877765432221 233345567899999
Q ss_pred ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcc
Q 007215 371 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVL 448 (612)
Q Consensus 371 rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~f 448 (612)
++.+.||++.++++++.+.++.++++|+++|.++..+.+++.++++++. +.+.|..++..++++.||++|+||..|++
T Consensus 197 ~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~ 276 (353)
T cd03811 197 RLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGF 276 (353)
T ss_pred cchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCC
Confidence 9999999999999999998888899999999999998888889888875 88999988888999999999999999999
Q ss_pred hHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEec--CCHHHHHHHHHHH
Q 007215 449 CTATAEALAMGKFVICADHPSNEF-FRSFPNCLTY--KTSEDFVARVKEA 495 (612)
Q Consensus 449 gl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~--~d~~~la~aI~~l 495 (612)
|++++|||+||+|||+++.|+..+ +.++.+|+++ +|++++++.+..+
T Consensus 277 ~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i 326 (353)
T cd03811 277 PNVLLEAMALGTPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALAL 326 (353)
T ss_pred CcHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 999999999999999999998655 5557889888 7888884444433
No 59
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.96 E-value=1.8e-27 Score=262.68 Aligned_cols=264 Identities=13% Similarity=0.143 Sum_probs=193.3
Q ss_pred HhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHH-HHhcCCeEE
Q 007215 243 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWV-TRAYCDKVL 320 (612)
Q Consensus 243 l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~ad~vI 320 (612)
+.+.|...++||+|+..+....+.. ...... |.+.++|+............. ......+..+ ....+|.+|
T Consensus 203 f~~~L~~~~~di~i~dr~~~~~~~~----~~~~~~~~~v~~lH~~h~~~~~~~~~~~---~~~~~y~~~~~~~~~~D~iI 275 (500)
T TIGR02918 203 FLKQLNLTKKDIIILDRSTGIGQAV----LENKGPAKLGVVVHAEHFSESATNETYI---LWNNYYEYQFSNADYIDFFI 275 (500)
T ss_pred HHHHHhCCCCCEEEEcCCcccchHH----HhcCCCceEEEEEChhhhcCccCcchhH---HHHHHHHHHHhchhhCCEEE
Confidence 3344445689999998777554443 333434 888999986532221100100 0111111111 112479999
Q ss_pred EeChhhhc-----cC-----CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhh
Q 007215 321 RLSAATQD-----LP-----KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHK 389 (612)
Q Consensus 321 ~~S~~~~~-----~~-----~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~ 389 (612)
++|+..++ ++ ..++.++ +|+++.++.+. .. ..+..++|+||+.++||++.||+|+.++.
T Consensus 276 ~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~---~~-------r~~~~il~vGrl~~~Kg~~~li~A~~~l~ 345 (500)
T TIGR02918 276 TATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE---QE-------RKPFSIITASRLAKEKHIDWLVKAVVKAK 345 (500)
T ss_pred ECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc---cc-------cCCeEEEEEeccccccCHHHHHHHHHHHH
Confidence 99996443 21 3556667 68876554321 11 12357999999999999999999999999
Q ss_pred ccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCC
Q 007215 390 NDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 390 ~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~ 467 (612)
++.|+++|+|+|.|+..+.++++++++++. |.|.|.. +..++++.||++|+||..|+||++++||||||+|||++++
T Consensus 346 ~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv 424 (500)
T TIGR02918 346 KSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDV 424 (500)
T ss_pred hhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecC
Confidence 888999999999999989999999998875 8899965 6678999999999999999999999999999999999998
Q ss_pred C-Cc-cccccCCcEEecC--C--------HHHHHHHHHHHHhCCCCCCC-----HHHHhcCCHHHHHHHHHHHHh
Q 007215 468 P-SN-EFFRSFPNCLTYK--T--------SEDFVARVKEALANDPQPLT-----PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 468 g-g~-~~i~~~~~g~l~~--d--------~~~la~aI~~ll~~~~~~~~-----~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+ |. +.+.++.+|+++. + +++||++|.+++ +++.+.+ ...++.|+|+.+++++.++++
T Consensus 425 ~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 425 NYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-NSNDIDAFHEYSYQIAEGFLTANIIEKWKKLVR 498 (500)
T ss_pred CCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6 64 5666789999982 2 889999999999 4433211 334567999999999999886
No 60
>PLN02275 transferase, transferring glycosyl groups
Probab=99.96 E-value=1.9e-26 Score=247.02 Aligned_cols=243 Identities=12% Similarity=0.021 Sum_probs=175.3
Q ss_pred cCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHH-hccchhHHHHHHHHHHHHHHhcCCeEEEeChh
Q 007215 248 PSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR-EKNGALQAFFVKHINNWVTRAYCDKVLRLSAA 325 (612)
Q Consensus 248 ~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~ 325 (612)
+..+||+||+++|..+.....+...++..+ |++.++|+.+...... .........+...+++++.+ .||.+|++|+.
T Consensus 97 ~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ad~ii~~S~~ 175 (371)
T PLN02275 97 KIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGK-MADGHLCVTKA 175 (371)
T ss_pred hCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHh-hCCEEEECCHH
Confidence 457999999987654332211233444456 9999999874322111 11122334556677777666 69999999998
Q ss_pred hhccC----CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhh-----------
Q 007215 326 TQDLP----KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHK----------- 389 (612)
Q Consensus 326 ~~~~~----~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~----------- 389 (612)
+++.. .-.+.++ ||+ .+.|.+..... .. ..+...+++++||+.+.||++.+++|+..+.
T Consensus 176 ~~~~l~~~~g~~i~vi~n~~-~~~f~~~~~~~---~~-~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~ 250 (371)
T PLN02275 176 MQHELDQNWGIRATVLYDQP-PEFFRPASLEI---RL-RPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESD 250 (371)
T ss_pred HHHHHHHhcCCCeEEECCCC-HHHcCcCCchh---cc-cCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhcccccc
Confidence 76521 1125666 664 45555432211 11 1123356789999999999999999998874
Q ss_pred ------ccCCCeEEEEEecCCCHHHHHHHHHHcCCc-eEEecC-CCCHH--HHHhccceEEeccC---CCcchHHHHHHH
Q 007215 390 ------NDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKG-RDHAD--DSLHGYKVFINPSI---SDVLCTATAEAL 456 (612)
Q Consensus 390 ------~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~-v~f~g~-~~~~~--~ll~~aDv~V~PS~---~E~fgl~llEAM 456 (612)
++.|+++|+|+|+|+..+++++++++++++ +.|+++ ++..+ ++|+.||++|.|+. .|+||++++|||
T Consensus 251 ~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAm 330 (371)
T PLN02275 251 SASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMF 330 (371)
T ss_pred ccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHH
Confidence 235789999999999999999999999987 788764 55444 89999999998642 389999999999
Q ss_pred HcCCcEEeeCCCCccc-cccCCcEEecCCHHHHHHHHHHHH
Q 007215 457 AMGKFVICADHPSNEF-FRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 457 A~G~PVVas~~gg~~~-i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
|||+|||+++.|+..+ +.++.+|+++.|+++++++|.+++
T Consensus 331 A~G~PVVa~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 331 GCGLPVCAVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HCCCCEEEecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 9999999999998654 556889999988999999998875
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.95 E-value=1.6e-25 Score=237.42 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=174.7
Q ss_pred HhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCc-------HhHHHHhcc--chhHHHHHHHH---HH
Q 007215 243 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNY-------LEYIKREKN--GALQAFFVKHI---NN 309 (612)
Q Consensus 243 l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~-------~~~~~~~~~--~~~~~~~~~~i---~~ 309 (612)
+.+.+...++|+|+++.+.... . .....+ |.+..+|+.. ..+...... ..........+ ++
T Consensus 75 ~~~~~~~~~~D~v~~~~~~~~~-~-----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (351)
T cd03804 75 AIEQFDLSGYDLVISSSHAVAK-G-----VITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDR 148 (351)
T ss_pred HHHhccccCCCEEEEcCcHHhc-c-----ccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHH
Confidence 4445556789999987653221 1 112233 8888888642 122211111 00011122222 22
Q ss_pred HHHHhcCCeEEEeChhhhc-----cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHH
Q 007215 310 WVTRAYCDKVLRLSAATQD-----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELID 383 (612)
Q Consensus 310 ~~~~~~ad~vI~~S~~~~~-----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~ 383 (612)
...+ .+|.++++|+.+++ +.. ...++ ||+|.+.+.+.. ..++.++|+|++.+.||++.+++
T Consensus 149 ~~~~-~~d~ii~~S~~~~~~~~~~~~~-~~~vi~~~~d~~~~~~~~-----------~~~~~il~~G~~~~~K~~~~li~ 215 (351)
T cd03804 149 RSAA-RVDYFIANSRFVARRIKKYYGR-DATVIYPPVDTDRFTPAE-----------EKEDYYLSVGRLVPYKRIDLAIE 215 (351)
T ss_pred HHhc-CCCEEEECCHHHHHHHHHHhCC-CcEEECCCCCHhhcCcCC-----------CCCCEEEEEEcCccccChHHHHH
Confidence 2222 58999999998765 233 34445 899987775432 12357899999999999999999
Q ss_pred HHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCc
Q 007215 384 LLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKF 461 (612)
Q Consensus 384 A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~P 461 (612)
|+.++ + ++|+|+|+|++.+.+++ ...-+|.|+|.+++.+ ++++.||++++||. |+||++++||||||+|
T Consensus 216 a~~~~----~-~~l~ivG~g~~~~~l~~---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~P 286 (351)
T cd03804 216 AFNKL----G-KRLVVIGDGPELDRLRA---KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTP 286 (351)
T ss_pred HHHHC----C-CcEEEEECChhHHHHHh---hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCC
Confidence 99887 3 78999999998777665 3333499999998866 99999999999999 9999999999999999
Q ss_pred EEeeCCCCcc-ccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC--HHHHhcCCHHHHHHHH
Q 007215 462 VICADHPSNE-FFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT--PEQRYNLSWEAATQRF 520 (612)
Q Consensus 462 VVas~~gg~~-~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~--~~~~~~~sWe~~~~~~ 520 (612)
||+++.|+.. .+.++.+|+++ +|+++++++|.++++++....+ ......|+|++..+++
T Consensus 287 vi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 287 VIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred EEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHHHhcCHHHHHHHh
Confidence 9999999854 45567789887 7999999999999965422222 2233568998777654
No 62
>PHA01630 putative group 1 glycosyl transferase
Probab=99.94 E-value=7.4e-25 Score=230.26 Aligned_cols=226 Identities=18% Similarity=0.161 Sum_probs=164.0
Q ss_pred HHhhh--CC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc------cC-CCcEEEe-CC
Q 007215 271 RWTDK--FN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD------LP-KSVICNV-HG 339 (612)
Q Consensus 271 ~~~~~--~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~------~~-~~~i~vi-nG 339 (612)
.|... .+ |++..+|+.+ .+...++.+.....+|.++++|+.+++ +. .+++.+| ||
T Consensus 61 ~~~~~~~~~~~~v~e~~~~~--------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNG 126 (331)
T PHA01630 61 FWKGIPHVGKNIVFEVADTD--------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHN 126 (331)
T ss_pred HHhhccccCCceEEEEEeec--------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCC
Confidence 35443 55 8888888732 122233444422368999999998765 22 3467777 89
Q ss_pred CCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc
Q 007215 340 VNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN 419 (612)
Q Consensus 340 Vd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~ 419 (612)
||++.|.+..... ..+.++++.|++.++||++.|++|++++.++.++++++++|++.....+. ++.
T Consensus 127 Vd~~~f~~~~~~~--------~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~------~~~ 192 (331)
T PHA01630 127 LNPRMFEYKPKEK--------PHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLF------GLN 192 (331)
T ss_pred CCHHHcCCCcccc--------CCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhc------ccc
Confidence 9988876542211 22346667888999999999999999998888899999999765433221 211
Q ss_pred eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-cccccCCcEEec--------------
Q 007215 420 LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN-EFFRSFPNCLTY-------------- 482 (612)
Q Consensus 420 v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-~~i~~~~~g~l~-------------- 482 (612)
.+.+.++..+ ++++.||+||+||..|+||++++||||||+|||+|+.||. +.+.++.||+++
T Consensus 193 -~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~ 271 (331)
T PHA01630 193 -GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI 271 (331)
T ss_pred -ceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc
Confidence 1234455444 9999999999999999999999999999999999999985 556667776553
Q ss_pred -------CCHHHHHHHHHHHHhCC--CCCCC------HHHHhcCCHHHHHHHHHHHHh
Q 007215 483 -------KTSEDFVARVKEALAND--PQPLT------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 483 -------~d~~~la~aI~~ll~~~--~~~~~------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
.|.+++++++.+++.++ ++... ....+.|+|++++++|.+.|+
T Consensus 272 ~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 272 HVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 47889999999999653 22111 345678999999999999997
No 63
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.93 E-value=7.6e-25 Score=237.41 Aligned_cols=253 Identities=17% Similarity=0.118 Sum_probs=181.0
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-C-EEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhh
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-H-VVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAAT 326 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-p-vv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~ 326 (612)
+.++|++|.+......... ..+.++.. + +|.+.|.... +..... .....+.+.+.+ .+|.++++|+..
T Consensus 125 ~~~~~v~~sy~~~~~~~~~--~~l~~~~~~~~~i~~~Hg~d~-~~~~~~------~~~~~~~~~~~~-~~d~ii~~S~~~ 194 (407)
T cd04946 125 DGQGTVFYSYWLHETAYAL--ALLKKEYLRKRVISRAHGYDL-YEDRYP------SGYIPLRRYLLS-SLDAVFPCSEQG 194 (407)
T ss_pred ccCceEEEEecCchHHHHH--HHHHHhcCCceEEEEeccchh-hhhhcc------ccchHHHHHHHh-cCCEEEECCHHH
Confidence 4567888875433332222 23344444 3 8999997532 111100 001122333333 589999999976
Q ss_pred hc-----cC--CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCC--CeE
Q 007215 327 QD-----LP--KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLD--GFK 396 (612)
Q Consensus 327 ~~-----~~--~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~--~~~ 396 (612)
++ ++ .+++.++ +|++...+.+.. ...+.+.++++|++.+.||++.+++|+.++.++.| +++
T Consensus 195 ~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~---------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~ 265 (407)
T cd04946 195 RNYLQKRYPAYKEKIKVSYLGVSDPGIISKP---------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIK 265 (407)
T ss_pred HHHHHHHCCCccccEEEEECCcccccccCCC---------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEE
Confidence 55 22 3566677 899866543321 11335789999999999999999999999988775 567
Q ss_pred EEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH--HHHhc--cceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc
Q 007215 397 LDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHG--YKVFINPSISDVLCTATAEALAMGKFVICADHPSN 470 (612)
Q Consensus 397 LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~--aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~ 470 (612)
++++|+|++.+.+++++++++.+ |.|+|.+++.+ ++++. +|+|++||.+||+|++++||||||+|||+|+.||.
T Consensus 266 ~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 266 WTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred EEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 78999999999999988877665 89999999877 78865 68999999999999999999999999999999996
Q ss_pred cccc-cCCcEEec---CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHH
Q 007215 471 EFFR-SFPNCLTY---KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFI 521 (612)
Q Consensus 471 ~~i~-~~~~g~l~---~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~ 521 (612)
.+++ ++.+|+++ +|+++++++|.++++ +++.+. +...++|+|+...++|.
T Consensus 346 ~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~-~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 346 PEIVDNGGNGLLLSKDPTPNELVSSLSKFID-NEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 5554 45689877 479999999999995 444433 33345677777776654
No 64
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.93 E-value=3e-25 Score=237.02 Aligned_cols=255 Identities=18% Similarity=0.183 Sum_probs=185.0
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhh
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQ 327 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~ 327 (612)
..++|+++++.+....+.. ...... +.+.++|+.............+.... +.+...+ ..+|.+|++|+..+
T Consensus 97 ~~~~diii~~~~~~~~~~~----~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~d~ii~~s~~~~ 169 (372)
T cd04949 97 DTKPDVFILDRPTLDGQAL----LNMKKAAKVVVVLHSNHVSDNNDPVHSLINNFY-EYVFENL--DKVDGVIVATEQQK 169 (372)
T ss_pred CCCCCEEEECCccccchhH----HhccCCceEEEEEChHHhCCcccccccccchhh-HHHHhCh--hhCCEEEEccHHHH
Confidence 3789999998877655422 222223 67888887543222110011111111 1111111 13799999999765
Q ss_pred c-----cCC-CcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEE
Q 007215 328 D-----LPK-SVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVF 400 (612)
Q Consensus 328 ~-----~~~-~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIv 400 (612)
+ ++. .++.++ ||++...+.+.. .....+..++|+||+.++||++.+++|+.++.++.|+++|+|+
T Consensus 170 ~~l~~~~~~~~~v~~ip~g~~~~~~~~~~--------~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~ 241 (372)
T cd04949 170 QDLQKQFGNYNPIYTIPVGSIDPLKLPAQ--------FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIY 241 (372)
T ss_pred HHHHHHhCCCCceEEEcccccChhhcccc--------hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4 222 336666 799977665432 0112346899999999999999999999999998999999999
Q ss_pred ecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC-Cc-cccccC
Q 007215 401 GNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP-SN-EFFRSF 476 (612)
Q Consensus 401 G~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g-g~-~~i~~~ 476 (612)
|.|++...++.+++++++. |.|.|...+..++++.||++|+||..|+||++++||||||+|||+++.+ |. +.+.++
T Consensus 242 G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~ 321 (372)
T cd04949 242 GYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDG 321 (372)
T ss_pred EeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccC
Confidence 9999988888888888875 8899988888899999999999999999999999999999999999987 54 556667
Q ss_pred CcEEec--CCHHHHHHHHHHHHhCCCCCCCHH------HHhcCCHHHHHHH
Q 007215 477 PNCLTY--KTSEDFVARVKEALANDPQPLTPE------QRYNLSWEAATQR 519 (612)
Q Consensus 477 ~~g~l~--~d~~~la~aI~~ll~~~~~~~~~~------~~~~~sWe~~~~~ 519 (612)
.+|+++ +|+++++++|.+++++ ++.+..+ ..+.|+|++++++
T Consensus 322 ~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~s~~~~~~~ 371 (372)
T cd04949 322 ENGYLVPKGDIEALAEAIIELLND-PKLLQKFSEAAYENAERYSEENVWEK 371 (372)
T ss_pred CCceEeCCCcHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 899998 6999999999999954 4333322 2356777777664
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=99.93 E-value=6.3e-24 Score=221.39 Aligned_cols=221 Identities=15% Similarity=0.131 Sum_probs=160.5
Q ss_pred CCEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-c----CCCcEEEeCCCCCCCCCCCcc-
Q 007215 277 NHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD-L----PKSVICNVHGVNPKFLQIGEK- 350 (612)
Q Consensus 277 ~pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-~----~~~~i~vinGVd~~~f~~~~~- 350 (612)
++++.++|..+.. ...++++.+ .+.+|++|+.+++ + .+..+.+++|+|++.|.+...
T Consensus 71 ~~~~tt~~g~~~~---------------~~y~~~m~~--~~~vIavS~~t~~~L~~~G~~~~i~I~~GVD~~~f~p~~~~ 133 (335)
T PHA01633 71 KYFYTTCDGIPNI---------------EIVNKYLLQ--DVKFIPNSKFSAENLQEVGLQVDLPVFHGINFKIVENAEKL 133 (335)
T ss_pred CceEEeeCCcCch---------------HHHHHHHhc--CCEEEeCCHHHHHHHHHhCCCCceeeeCCCChhhcCccchh
Confidence 3889999987631 233455444 4689999997765 1 112355669999988876532
Q ss_pred -chhhhhhccC-CCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC----eEEEEEecCCCHHHHHHHHHHcCCc--eEE
Q 007215 351 -VATDREQGQQ-AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGNGEDAYEVQSAAKRLDLN--LNF 422 (612)
Q Consensus 351 -~~~~~~~~~~-~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~----~~LvIvG~g~~~~~l~~~~~~l~l~--v~f 422 (612)
...+++++.. ++.++++++||+.++||++.|++|++++.++.|+ ++++++|. .. .+++++. |.|
T Consensus 134 ~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~----~~----~~~l~l~~~V~f 205 (335)
T PHA01633 134 VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH----KQ----FTQLEVPANVHF 205 (335)
T ss_pred hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH----HH----HHHcCCCCcEEE
Confidence 2334444432 4567889999999999999999999999877664 57888873 12 2344443 888
Q ss_pred ec---CCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccccC-------------------Cc
Q 007215 423 QK---GRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSF-------------------PN 478 (612)
Q Consensus 423 ~g---~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~-------------------~~ 478 (612)
.| ..+..+ ++++.||+||+||.+|+||++++||||||+|||+++.|+.+++.++ ..
T Consensus 206 ~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~ 285 (335)
T PHA01633 206 VAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ 285 (335)
T ss_pred EecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc
Confidence 85 334333 9999999999999999999999999999999999999987665432 23
Q ss_pred EEec--CCHHHHHHHHHHHHhCCCC-CCC---HHHHhcCCHHHHHHHHHH
Q 007215 479 CLTY--KTSEDFVARVKEALANDPQ-PLT---PEQRYNLSWEAATQRFIE 522 (612)
Q Consensus 479 g~l~--~d~~~la~aI~~ll~~~~~-~~~---~~~~~~~sWe~~~~~~~~ 522 (612)
|+.+ .|+++++++|.+++..... .+. +..++.|+|+++.++|++
T Consensus 286 g~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 286 KWKIHKFQIEDMANAIILAFELQDREERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eeeecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 5555 6999999999999644322 111 456788999999998864
No 66
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.90 E-value=1.6e-22 Score=219.69 Aligned_cols=278 Identities=13% Similarity=0.073 Sum_probs=173.0
Q ss_pred HhhhccCCCccEEEECCCchhHHhhhhHHHh-hhCC-CEEEEEeCCcHhHHHHhccchhHH----------------HHH
Q 007215 243 TSQFIPSKDADIAILEEPEHLNWYHHGKRWT-DKFN-HVVGVVHTNYLEYIKREKNGALQA----------------FFV 304 (612)
Q Consensus 243 l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~-~~~~-pvv~~~H~~~~~~~~~~~~~~~~~----------------~~~ 304 (612)
+.+.+...++||+|+|++...... ...+ .... |.|++.|.......-......+.+ .-.
T Consensus 140 ~~~~~~~~~~dViH~HeWm~g~a~---~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r 216 (590)
T cd03793 140 FAEQFDDEPAVVAHFHEWQAGVGL---PLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHR 216 (590)
T ss_pred HHhhccCCCCeEEEEcchhHhHHH---HHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHH
Confidence 444433467999999988743222 2333 3344 899999965432210001011110 111
Q ss_pred HHHHHHHHHhcCCeEEEeChhhhc-------cCCCcEEEeCCCCCCCCCCCcc-----------------chhhhhhccC
Q 007215 305 KHINNWVTRAYCDKVLRLSAATQD-------LPKSVICNVHGVNPKFLQIGEK-----------------VATDREQGQQ 360 (612)
Q Consensus 305 ~~i~~~~~~~~ad~vI~~S~~~~~-------~~~~~i~vinGVd~~~f~~~~~-----------------~~~~~~~~~~ 360 (612)
..+|+.... .||.++++|+.+++ .++++ ++.||+|+++|++... ...+..++++
T Consensus 217 ~~iE~~aa~-~Ad~fttVS~it~~E~~~Ll~~~pd~-ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~ 294 (590)
T cd03793 217 YCIERAAAH-CAHVFTTVSEITAYEAEHLLKRKPDV-VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFD 294 (590)
T ss_pred HHHHHHHHh-hCCEEEECChHHHHHHHHHhCCCCCE-EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCC
Confidence 235666555 79999999998765 22233 4449999998876531 1123345566
Q ss_pred CCCcEEEE-EeccCC-ccCHHHHHHHHHHhhc----cCCC---eEEEEEecCCC------------HHHHH---------
Q 007215 361 AFSKGAYF-LGKMVW-AKGYRELIDLLAKHKN----DLDG---FKLDVFGNGED------------AYEVQ--------- 410 (612)
Q Consensus 361 ~~~~~il~-vGrl~~-~Kg~~~Li~A~~~l~~----~~~~---~~LvIvG~g~~------------~~~l~--------- 410 (612)
+++++++| +||+.. +||++.+|+|++++.. ...+ +-|+++-.+.. .++++
T Consensus 295 ~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~ 374 (590)
T cd03793 295 LDKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEK 374 (590)
T ss_pred CCCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHH
Confidence 67778877 799998 9999999999988854 2233 22333322211 00111
Q ss_pred ----------------------------------------------------------HHHHHcCCc--------eEEec
Q 007215 411 ----------------------------------------------------------SAAKRLDLN--------LNFQK 424 (612)
Q Consensus 411 ----------------------------------------------------------~~~~~l~l~--------v~f~g 424 (612)
..+.+.++- |.|++
T Consensus 375 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P 454 (590)
T cd03793 375 IGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHP 454 (590)
T ss_pred hhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcc
Confidence 112222221 44544
Q ss_pred CCC---------CHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc----ccccc-C-CcEEec-------
Q 007215 425 GRD---------HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN----EFFRS-F-PNCLTY------- 482 (612)
Q Consensus 425 ~~~---------~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~----~~i~~-~-~~g~l~------- 482 (612)
..- +.+++++.||++|+||++||||++++||||||+|||+|+.+|. +++.. + ..|+.+
T Consensus 455 ~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~ 534 (590)
T cd03793 455 EFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKS 534 (590)
T ss_pred cccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccc
Confidence 322 2338999999999999999999999999999999999999876 44443 2 234443
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHhc
Q 007215 483 --KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSEL 526 (612)
Q Consensus 483 --~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~~ 526 (612)
.+.++++++|.+++ +.+.+.+ +.....|+|+..++.|.++|++
T Consensus 535 ~~e~v~~La~~m~~~~-~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~ 586 (590)
T cd03793 535 PDESVQQLTQYMYEFC-QLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQL 586 (590)
T ss_pred hHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 24678888888888 3332221 2345669999999999999983
No 67
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.88 E-value=2.9e-22 Score=220.02 Aligned_cols=267 Identities=10% Similarity=0.091 Sum_probs=171.5
Q ss_pred CccEEEECCCchhHHhhhhHHHhhhC-C-CEEEEEeCCcHhHHHHhccchhHHHHHHHHH----------HHHHHh--cC
Q 007215 251 DADIAILEEPEHLNWYHHGKRWTDKF-N-HVVGVVHTNYLEYIKREKNGALQAFFVKHIN----------NWVTRA--YC 316 (612)
Q Consensus 251 ~pDVVh~~~p~~l~~~~~~~~~~~~~-~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~----------~~~~~~--~a 316 (612)
..|+|++|++..+.... ...++. . +++.++|+.++.+.-. ..-+....+++.+. .+...+ .|
T Consensus 131 ~~d~iwihDyhl~llp~---~lr~~~~~~~i~~f~HipfP~~e~~-~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQ---MLRERGPDARIGFFLHIPFPSSEIF-RCLPWREELLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCEEEEeChhhhHHHH---HHHhhCCCCeEEEEEeCCCCChHHH-hhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 57999999986444333 222322 3 8999999988765421 11111122222221 111000 12
Q ss_pred CeEEEeChhhhc---cC--CCcEEEe-CCCCCCCCCCCccch-----hhhhhccCCCCcEEEEEeccCCccCHHHHHHHH
Q 007215 317 DKVLRLSAATQD---LP--KSVICNV-HGVNPKFLQIGEKVA-----TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLL 385 (612)
Q Consensus 317 d~vI~~S~~~~~---~~--~~~i~vi-nGVd~~~f~~~~~~~-----~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~ 385 (612)
+.++..+..... +. ..++.++ +|||++.|.+..... .+...+..+++++|+++||+++.||++.+++|+
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A~ 286 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLAF 286 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHHH
Confidence 333333322111 11 1346666 799988776442211 112234446678999999999999999999999
Q ss_pred HHhhccCCC----eEEEEEecCC-----CHHHH----HHHHHHc----C---C-ceEEe-cCCCCHH--HHHhccceEEe
Q 007215 386 AKHKNDLDG----FKLDVFGNGE-----DAYEV----QSAAKRL----D---L-NLNFQ-KGRDHAD--DSLHGYKVFIN 441 (612)
Q Consensus 386 ~~l~~~~~~----~~LvIvG~g~-----~~~~l----~~~~~~l----~---l-~v~f~-g~~~~~~--~ll~~aDv~V~ 441 (612)
+++.++.|+ ++|+++|.+. +..++ ++++.+. + . .+.++ |.++..+ ++|+.||+||+
T Consensus 287 ~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~ 366 (460)
T cd03788 287 ERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALV 366 (460)
T ss_pred HHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEe
Confidence 999887775 6788887532 22233 3333332 2 1 25555 5555555 99999999999
Q ss_pred ccCCCcchHHHHHHHHcCCc----EEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHh
Q 007215 442 PSISDVLCTATAEALAMGKF----VICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRY 509 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~P----VVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~ 509 (612)
||..||||++++||||||+| ||+|+.+|..+. +.+|+++ .|++++|++|.++++++++.++ +....
T Consensus 367 pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~--~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~ 444 (460)
T cd03788 367 TPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE--LSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVR 444 (460)
T ss_pred CccccccCcccceeEEEecCCCceEEEeccccchhh--cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999987774443 4578877 7999999999999966544322 22335
Q ss_pred cCCHHHHHHHHHHH
Q 007215 510 NLSWEAATQRFIEY 523 (612)
Q Consensus 510 ~~sWe~~~~~~~~~ 523 (612)
.++|+..+++|++.
T Consensus 445 ~~~~~~w~~~~l~~ 458 (460)
T cd03788 445 THDVQAWANSFLDD 458 (460)
T ss_pred hCCHHHHHHHHHHh
Confidence 68998888888764
No 68
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.4e-21 Score=208.60 Aligned_cols=374 Identities=15% Similarity=0.139 Sum_probs=231.0
Q ss_pred ceEEEEeCCCCC-CcCcccccHHHHHH-HhhhcCCccEEEEecccCC---C--C--ceEE-cCCcccCCchhHHHHHHHH
Q 007215 141 RNVAIVTTASLP-WMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCK---S--D--QELV-YPNVTFCSPEEQENYMRNW 210 (612)
Q Consensus 141 ~kI~ivt~~~~P-~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~---G--~--~V~V-~p~~~f~~~~~~~~~~~~w 210 (612)
|||+.+|.+..| -.+||....+..+. +|++.| ++|++++|.... . . ++.. .+ ..+......-..
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g-~~v~v~lP~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---- 74 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRG-VDVRVLLPSYPKVQKEWRDLLKVVGKFG-VLKGGRAQLFIV---- 74 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcC-CeEEEEcCCchhhhhhhccccceeeEee-eeecccceEEEE----
Confidence 689999998888 66776777777777 888885 788888776642 1 1 1100 10 000000000000
Q ss_pred HHhhhCC-CCCcee-----cccCCC--------cccccccccChHhHhhhccC----CCccEEEECCCchhHHhhhhHHH
Q 007215 211 LEERVGF-KADFKI-----SFYPGK--------FSKERRSIIPAGDTSQFIPS----KDADIAILEEPEHLNWYHHGKRW 272 (612)
Q Consensus 211 ~~~~v~~-~~~~~i-----~~~~~~--------y~~~~~si~~~~~l~~~l~~----~~pDVVh~~~p~~l~~~~~~~~~ 272 (612)
.... ..++++ +.+.+| +.+..|..+........+.. .+|||||+|++....... ..
T Consensus 75 ---~~~~~~~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~---~l 148 (487)
T COG0297 75 ---KEYGKDGGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPA---YL 148 (487)
T ss_pred ---EeecccCCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHH---HH
Confidence 0000 000111 111111 11122222222222233321 479999999876432222 22
Q ss_pred hh----hCC-CEEEEEeCCcHhHHHHh---ccchhHHHHHH----------HHHHHHHHhcCCeEEEeChhh-hccC---
Q 007215 273 TD----KFN-HVVGVVHTNYLEYIKRE---KNGALQAFFVK----------HINNWVTRAYCDKVLRLSAAT-QDLP--- 330 (612)
Q Consensus 273 ~~----~~~-pvv~~~H~~~~~~~~~~---~~~~~~~~~~~----------~i~~~~~~~~ad~vI~~S~~~-~~~~--- 330 (612)
+. ... |.|.++|+......-.. ..-.+...... .+.|.- -.+||.|.++|... +++-
T Consensus 149 k~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~g-i~~ad~vttVSptYa~Ei~t~~ 227 (487)
T COG0297 149 KQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGG-LYYADAVTTVSPTYAGEIYTPE 227 (487)
T ss_pred hhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhh-heeccEEEEECHHHHHhhcccc
Confidence 22 334 99999997643322110 00011111101 111111 12489999999953 4411
Q ss_pred ------------CCcEEEe-CCCCCCCCCCCcc-------------------chhhhhhccC--CCCcEEEEEeccCCcc
Q 007215 331 ------------KSVICNV-HGVNPKFLQIGEK-------------------VATDREQGQQ--AFSKGAYFLGKMVWAK 376 (612)
Q Consensus 331 ------------~~~i~vi-nGVd~~~f~~~~~-------------------~~~~~~~~~~--~~~~~il~vGrl~~~K 376 (612)
..++.-| ||+|.+.+.|... ..+..+++++ .+.|.+.++||+..+|
T Consensus 228 ~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QK 307 (487)
T COG0297 228 YGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQK 307 (487)
T ss_pred ccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeecccccc
Confidence 1334444 9999887766522 1233455665 3568999999999999
Q ss_pred CHHHHHHHHHHhhccCCCeEEEEEecCCCH--HHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCCCcchHHH
Q 007215 377 GYRELIDLLAKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTAT 452 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~l 452 (612)
|++.+++++..+.++. .++++.|.|+.. +.+.++++++...+.+.-+.++.- .+++.+|++++||++|++|++-
T Consensus 308 G~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~q 385 (487)
T COG0297 308 GLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQ 385 (487)
T ss_pred chhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHH
Confidence 9999999999998864 899999999432 678888888877655544444444 8999999999999999999999
Q ss_pred HHHHHcCCcEEeeCCCCc-ccccc--------CCcEEec--CCHHHHHHHHHHHHh---CCCCCCCHHH----HhcCCHH
Q 007215 453 AEALAMGKFVICADHPSN-EFFRS--------FPNCLTY--KTSEDFVARVKEALA---NDPQPLTPEQ----RYNLSWE 514 (612)
Q Consensus 453 lEAMA~G~PVVas~~gg~-~~i~~--------~~~g~l~--~d~~~la~aI~~ll~---~~~~~~~~~~----~~~~sWe 514 (612)
++||..|+++|+..+||. +.|.+ ..+|+++ .|+++++.+|.+++. .++..++... ...++|+
T Consensus 386 l~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~sw~ 465 (487)
T COG0297 386 LYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFSWD 465 (487)
T ss_pred HHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcccccCch
Confidence 999999999999999994 54553 4789988 899999999998763 2222133111 2578999
Q ss_pred HHHHHHHHHHhcccccc
Q 007215 515 AATQRFIEYSELNRILN 531 (612)
Q Consensus 515 ~~~~~~~~~y~~~~~~~ 531 (612)
..+++|.+.|+ .+.+
T Consensus 466 ~sa~~y~~lY~--~~~~ 480 (487)
T COG0297 466 LSAKEYVELYK--PLLS 480 (487)
T ss_pred hHHHHHHHHHH--HHhc
Confidence 99999999999 6554
No 69
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.87 E-value=1.4e-20 Score=202.14 Aligned_cols=254 Identities=14% Similarity=0.092 Sum_probs=171.0
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+||++.|...... .+.....+ |++.++++... . .+|+.+ .+|.+
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~~~~---~~~~~~~~ip~~~~~td~~~----~--------------~~~~~~-~ad~i 151 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIAVPE---LKKQTGISIPTYNVLTDFCL----H--------------KIWVHR-EVDRY 151 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHHHHH---HHHhcCCCCCeEEEeCCCCC----C--------------cccccC-CCCEE
Confidence 55777788899999999877643221 23333445 77654433210 0 112222 58999
Q ss_pred EEeChhhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEE-EEEeccCCccCHHHHHHHHHHhhcc
Q 007215 320 LRLSAATQD------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGA-YFLGKMVWAKGYRELIDLLAKHKND 391 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~i-l~vGrl~~~Kg~~~Li~A~~~l~~~ 391 (612)
+++|+.+++ ++++++.++ +.++..+..+.+....+.+++++++++++ ++.|+....|+++.+++++.+.
T Consensus 152 ~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~~--- 228 (380)
T PRK13609 152 FVATDHVKKVLVDIGVPPEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMSV--- 228 (380)
T ss_pred EECCHHHHHHHHHcCCChhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhhC---
Confidence 999997765 345566665 44443343333333456677777666654 5668888889999999988643
Q ss_pred CCCeEEEEEecCC--CHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC-CC
Q 007215 392 LDGFKLDVFGNGE--DAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD-HP 468 (612)
Q Consensus 392 ~~~~~LvIvG~g~--~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~-~g 468 (612)
++++++++|++. ..+.+++++++++.+++|+|.+++..++++.||++|. ++.|++++||||||+|||+++ .+
T Consensus 229 -~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~ 303 (380)
T PRK13609 229 -PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILYKPVP 303 (380)
T ss_pred -CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEECCCCC
Confidence 678888775432 3467777777666459999999887899999999884 456999999999999999986 55
Q ss_pred Ccc-----ccccCCcEEecCCHHHHHHHHHHHHhCCCCCCCHHH------HhcCCHHHHHHHHHHHHh
Q 007215 469 SNE-----FFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQ------RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 469 g~~-----~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~~~~------~~~~sWe~~~~~~~~~y~ 525 (612)
+.+ .+.+...++...|+++++++|.++++ +++.+..+. ...++++.+++.+++.++
T Consensus 304 g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~-~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 304 GQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQ-DDMKLLQMKEAMKSLYLPEPADHIVDDILAENH 370 (380)
T ss_pred CcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence 532 22222233444999999999999994 444433322 234688889998888776
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.86 E-value=6.5e-21 Score=207.88 Aligned_cols=268 Identities=15% Similarity=0.073 Sum_probs=175.3
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+++.+.+||++|+.+... |.. .....++.+ |++.+.|......... ......+.+.+.+ .+|.|
T Consensus 114 ~~~~~~l~~~~Pd~v~~~~~~~--~~~-~l~~~~~~~ip~vl~~~~~~~~s~~~-------~~~~~~~~r~~~~-~~d~i 182 (425)
T PRK05749 114 GAVRRFLRFWRPKLVIIMETEL--WPN-LIAELKRRGIPLVLANARLSERSFKR-------YQKFKRFYRLLFK-NIDLV 182 (425)
T ss_pred HHHHHHHHhhCCCEEEEEecch--hHH-HHHHHHHCCCCEEEEeccCChhhHHH-------HHHHHHHHHHHHH-hCCEE
Confidence 3566778889999999865432 322 123345556 8887655543222211 1112333444443 47999
Q ss_pred EEeChhhhc------cCCCcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhh
Q 007215 320 LRLSAATQD------LPKSVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHK 389 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~ 389 (612)
++.|+..++ .+++ +.++++++.+.+.+.. ....+.+++ +++++++++|+ ..|+.+.+++|++++.
T Consensus 183 i~~S~~~~~~l~~~g~~~~-i~vi~n~~~d~~~~~~~~~~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~ 257 (425)
T PRK05749 183 LAQSEEDAERFLALGAKNE-VTVTGNLKFDIEVPPELAARAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALL 257 (425)
T ss_pred EECCHHHHHHHHHcCCCCC-cEecccccccCCCChhhHHHHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHH
Confidence 999997765 2334 6666544433322211 122333343 35578888886 4688999999999998
Q ss_pred ccCCCeEEEEEecCCCH-HHHHHHHHHcCCc-eEEecC--------------CCCHHHHHhccceEE-eccCCCcchHHH
Q 007215 390 NDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN-LNFQKG--------------RDHADDSLHGYKVFI-NPSISDVLCTAT 452 (612)
Q Consensus 390 ~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~-v~f~g~--------------~~~~~~ll~~aDv~V-~PS~~E~fgl~l 452 (612)
++.|+++|+|+|.|+.. ++++++++++|+. +.|.+. ..+..++|+.||+++ .+|..|++|.++
T Consensus 258 ~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 258 KQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred HhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCH
Confidence 87899999999999886 7899999998886 444442 223449999999855 478889999999
Q ss_pred HHHHHcCCcEEeeCC-CCccccccC--CcEEec--CCHHHHHHHHHHHHhCCCCCCCHHHHhcCCH----HHHHHHHHHH
Q 007215 453 AEALAMGKFVICADH-PSNEFFRSF--PNCLTY--KTSEDFVARVKEALANDPQPLTPEQRYNLSW----EAATQRFIEY 523 (612)
Q Consensus 453 lEAMA~G~PVVas~~-gg~~~i~~~--~~g~l~--~d~~~la~aI~~ll~~~~~~~~~~~~~~~sW----e~~~~~~~~~ 523 (612)
+||||||+|||+++. ++..++.+. .+|.++ +|+++++++|.+++ ++++.+.+++.+.+.+ ..+++++++.
T Consensus 338 lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll-~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~ 416 (425)
T PRK05749 338 LEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLL-TDPDARQAYGEAGVAFLKQNQGALQRTLQL 416 (425)
T ss_pred HHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 999999999999875 344333321 234443 99999999999999 5555555444433221 2456777776
Q ss_pred Hh
Q 007215 524 SE 525 (612)
Q Consensus 524 y~ 525 (612)
++
T Consensus 417 l~ 418 (425)
T PRK05749 417 LE 418 (425)
T ss_pred HH
Confidence 66
No 71
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.86 E-value=1.6e-20 Score=198.93 Aligned_cols=237 Identities=17% Similarity=0.148 Sum_probs=167.5
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+++.+||+||++.+.. .+.. ..+++..+ |++...|+.+.. ..++++.+ .+|.+
T Consensus 79 ~~~~~~i~~~~pDvI~~~~~~~-~~~~--~~~a~~~~~p~v~~~~~~~~~----------------~~~~~~~~-~~~~v 138 (350)
T cd03785 79 LQARKILKKFKPDVVVGFGGYV-SGPV--GLAAKLLGIPLVIHEQNAVPG----------------LANRLLAR-FADRV 138 (350)
T ss_pred HHHHHHHHhcCCCEEEECCCCc-chHH--HHHHHHhCCCEEEEcCCCCcc----------------HHHHHHHH-hhCEE
Confidence 3456667788999999987543 2222 23445556 887654443211 12233333 57999
Q ss_pred EEeChhhhc-cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHH-HHHHHHHhhccCCCeE
Q 007215 320 LRLSAATQD-LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRE-LIDLLAKHKNDLDGFK 396 (612)
Q Consensus 320 I~~S~~~~~-~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~-Li~A~~~l~~~~~~~~ 396 (612)
+++|+...+ ++.+++.++ ||+|.+++.+... +.+++.++++++++++|+....|+... +++|++.+.+ ++++
T Consensus 139 i~~s~~~~~~~~~~~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~~ 213 (350)
T cd03785 139 ALSFPETAKYFPKDKAVVTGNPVREEILALDRE---RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRLQ 213 (350)
T ss_pred EEcchhhhhcCCCCcEEEECCCCchHHhhhhhh---HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCeE
Confidence 999998776 456777777 8999877654321 455666677788888887777777765 4588888863 3555
Q ss_pred -EEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC------
Q 007215 397 -LDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS------ 469 (612)
Q Consensus 397 -LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg------ 469 (612)
++++|.+ +.+.+++.+++++.++.|.|...+..++|+.||++|.+|- +++++|||+||+|||+++.++
T Consensus 214 ~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~ 288 (350)
T cd03785 214 VIHQTGKG-DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDHQ 288 (350)
T ss_pred EEEEcCCc-cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCcH
Confidence 4577887 5677888887765459999998777799999999998762 689999999999999997653
Q ss_pred ---ccccccCCcEEec--C--CHHHHHHHHHHHHhCCCCCCCHHHH
Q 007215 470 ---NEFFRSFPNCLTY--K--TSEDFVARVKEALANDPQPLTPEQR 508 (612)
Q Consensus 470 ---~~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~~~~~~~ 508 (612)
.+.+.+..+|+++ + |+++++++|.+++ ++++.++.+..
T Consensus 289 ~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~ 333 (350)
T cd03785 289 TANARALVKAGAAVLIPQEELTPERLAAALLELL-SDPERLKAMAE 333 (350)
T ss_pred HHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 2456667788887 3 8999999999999 44544444443
No 72
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=1.9e-20 Score=199.38 Aligned_cols=235 Identities=14% Similarity=0.078 Sum_probs=163.3
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCe
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~ 318 (612)
...+.+.+++.+||+||++.+.. .+.. ....+..+ |++.+.|..+.. ..++++.+ .+|.
T Consensus 80 ~~~~~~~ik~~~pDvv~~~~~~~-~~~~--~~~~~~~~~p~v~~~~~~~~~----------------~~~r~~~~-~~d~ 139 (357)
T PRK00726 80 VLQARKILKRFKPDVVVGFGGYV-SGPG--GLAARLLGIPLVIHEQNAVPG----------------LANKLLAR-FAKK 139 (357)
T ss_pred HHHHHHHHHhcCCCEEEECCCcc-hhHH--HHHHHHcCCCEEEEcCCCCcc----------------HHHHHHHH-Hhch
Confidence 34556667788999999997543 2222 22334445 888665543211 12343333 5789
Q ss_pred EEEeChhhh-ccCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHH-HHHHHhhccCCCe
Q 007215 319 VLRLSAATQ-DLPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELI-DLLAKHKNDLDGF 395 (612)
Q Consensus 319 vI~~S~~~~-~~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li-~A~~~l~~~~~~~ 395 (612)
+++.++... +.+..++.++ ||+|.+.+.+.. .+.+++.+++.++++++|+....|++..++ +|++++.+. + .
T Consensus 140 ii~~~~~~~~~~~~~~i~vi~n~v~~~~~~~~~---~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~ 214 (357)
T PRK00726 140 VATAFPGAFPEFFKPKAVVTGNPVREEILALAA---PPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-Q 214 (357)
T ss_pred heECchhhhhccCCCCEEEECCCCChHhhcccc---hhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-E
Confidence 998887442 2455778888 899977655422 222345555677889999988888876665 999888654 3 5
Q ss_pred EEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c----
Q 007215 396 KLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-N---- 470 (612)
Q Consensus 396 ~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~---- 470 (612)
.++++|.|+. +.+.+..+ +++++.|.|+.++..++++.||++|.+| .+++++|||+||+|||+++.++ .
T Consensus 215 ~~~~~G~g~~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~ 288 (357)
T PRK00726 215 VIHQTGKGDL-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRA----GASTVAELAAAGLPAILVPLPHAADDHQ 288 (357)
T ss_pred EEEEcCCCcH-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECC----CHHHHHHHHHhCCCEEEecCCCCCcCcH
Confidence 6788899875 44444455 7777899999977889999999999876 2689999999999999997653 1
Q ss_pred ----cccccCCcEEec--CC--HHHHHHHHHHHHhCCCCCCCHH
Q 007215 471 ----EFFRSFPNCLTY--KT--SEDFVARVKEALANDPQPLTPE 506 (612)
Q Consensus 471 ----~~i~~~~~g~l~--~d--~~~la~aI~~ll~~~~~~~~~~ 506 (612)
+.+.+..+|+++ +| +++++++|.+++++ ++.++.+
T Consensus 289 ~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~ 331 (357)
T PRK00726 289 TANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD-PERLEAM 331 (357)
T ss_pred HHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC-HHHHHHH
Confidence 346667778777 55 99999999999944 5444433
No 73
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.85 E-value=3.3e-20 Score=198.95 Aligned_cols=256 Identities=16% Similarity=0.110 Sum_probs=172.6
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCCCEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD 328 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~ 328 (612)
+.+.+|+..+.|....+.. . ....++|+.+++.+...... .... ...++.+.+ .||.|+++|+.+++
T Consensus 100 ~~~~~i~~~~~P~~~~~~~---~--~~~~~~Vyd~~D~~~~~~~~------~~~~-~~~e~~~~~-~ad~vi~~S~~l~~ 166 (373)
T cd04950 100 GFGRPILWYYTPYTLPVAA---L--LQASLVVYDCVDDLSAFPGG------PPEL-LEAERRLLK-RADLVFTTSPSLYE 166 (373)
T ss_pred CCCCcEEEEeCccHHHHHh---h--cCCCeEEEEcccchhccCCC------CHHH-HHHHHHHHH-hCCEEEECCHHHHH
Confidence 4566788888887665554 1 12227888888776544311 1111 144555554 58999999998766
Q ss_pred cC---CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCC
Q 007215 329 LP---KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGE 404 (612)
Q Consensus 329 ~~---~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~ 404 (612)
.. ..++.++ ||+|.+.|.+........+......+++++|+|++.+.++++.+.++.+ ..|+++|+++|.++
T Consensus 167 ~~~~~~~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ll~~la~----~~p~~~~vliG~~~ 242 (373)
T cd04950 167 AKRRLNPNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLELLEALAK----ARPDWSFVLIGPVD 242 (373)
T ss_pred HHhhCCCCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHHHHHHHHH----HCCCCEEEEECCCc
Confidence 21 2567777 8999887765432211101112245689999999999888876655444 34789999999983
Q ss_pred CHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCC-----CcchHHHHHHHHcCCcEEeeCCCCccccccCC
Q 007215 405 DAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSIS-----DVLCTATAEALAMGKFVICADHPSNEFFRSFP 477 (612)
Q Consensus 405 ~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~-----E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~ 477 (612)
.......+ .+ .-+|+|+|.++..+ ++++.+|++++|+.. +++|++++||||||+|||+|+.+..... ..
T Consensus 243 ~~~~~~~~-~~-~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~~--~~ 318 (373)
T cd04950 243 VSIDPSAL-LR-LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRRY--ED 318 (373)
T ss_pred CccChhHh-cc-CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHhh--cC
Confidence 33222221 11 12499999998777 999999999999864 4689999999999999999987653322 22
Q ss_pred cEEec-CCHHHHHHHHHHHHhCCCCCC-CHH--HHhcCCHHHHHHHHHHHHh
Q 007215 478 NCLTY-KTSEDFVARVKEALANDPQPL-TPE--QRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 478 ~g~l~-~d~~~la~aI~~ll~~~~~~~-~~~--~~~~~sWe~~~~~~~~~y~ 525 (612)
+++++ +|+++++++|.+++.++.... .+. ..+.+||++.++++.+..+
T Consensus 319 ~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~~~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 319 EVVLIADDPEEFVAAIEKALLEDGPARERRRLRLAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred cEEEeCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 34444 889999999999875543322 222 4778999999999986544
No 74
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.84 E-value=3.3e-21 Score=183.07 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=129.5
Q ss_pred hhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhcc-CCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCC
Q 007215 352 ATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND-LDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDH 428 (612)
Q Consensus 352 ~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~-~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~ 428 (612)
..+...+....+++++|+|++.+.||++.+++|+..+.++ .++++++|+|.++....++..++.+++. +.|++...+
T Consensus 4 ~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (172)
T PF00534_consen 4 KLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPD 83 (172)
T ss_dssp HHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSH
T ss_pred HHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccc
Confidence 3445556667788999999999999999999999999764 6899999999888888899999998885 999999983
Q ss_pred H--HHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-cccccCCcEEec--CCHHHHHHHHHHHHhCCCCCC
Q 007215 429 A--DDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN-EFFRSFPNCLTY--KTSEDFVARVKEALANDPQPL 503 (612)
Q Consensus 429 ~--~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~ 503 (612)
. .++++.||++|+||..|+||++++|||+||+|||+++.|+. +.+.++.+|+++ .|+++++++|.+++.++ +.+
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~-~~~ 162 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP-ELR 162 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH-HHH
T ss_pred cccccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH-HHH
Confidence 3 39999999999999999999999999999999999999985 555567789988 88999999999999554 444
Q ss_pred CHHHH
Q 007215 504 TPEQR 508 (612)
Q Consensus 504 ~~~~~ 508 (612)
+.+.+
T Consensus 163 ~~l~~ 167 (172)
T PF00534_consen 163 QKLGK 167 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 75
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=2.9e-19 Score=175.20 Aligned_cols=221 Identities=21% Similarity=0.156 Sum_probs=160.8
Q ss_pred EEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCCCCc
Q 007215 143 VAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 221 (612)
Q Consensus 143 I~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~~~~ 221 (612)
|++++..+.|..+| ..+....++ .|++. ||+|+|+.. .
T Consensus 1 i~~i~~~~~~~~~G-~~~~~~~l~~~L~~~--------------g~~v~v~~~-----------~--------------- 39 (229)
T cd01635 1 ILLVSTPLLPGGGG-VELVLLDLAKALARR--------------GHEVEVVAL-----------L--------------- 39 (229)
T ss_pred CeeeccccCCCCCC-chhHHHHHHHHHHHc--------------CCeEEEEEe-----------c---------------
Confidence 57788888776666 666666666 89998 888888631 0
Q ss_pred eecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhH
Q 007215 222 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQ 300 (612)
Q Consensus 222 ~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~ 300 (612)
...+...+.+.+||+||++.+....... ..+....+ |++.++|+.+.........
T Consensus 40 ------------------~~~~~~~~~~~~~D~i~~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~---- 95 (229)
T cd01635 40 ------------------LLLLLRILRGFKPDVVHAHGYYPAPLAL--LLAARLLGIPLVLTVHGVNRSLLEGVPL---- 95 (229)
T ss_pred ------------------hHHHHHHHhhcCCCEEEEcCCCcHHHHH--HHHHhhCCCCEEEEEcCccHhhcccCcH----
Confidence 0113334446789999999887665543 23444555 9999999988765422110
Q ss_pred HHHHHHHHHHHHHhcCCeEEEeChhhhccCCCcEEEeCCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHH
Q 007215 301 AFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRE 380 (612)
Q Consensus 301 ~~~~~~i~~~~~~~~ad~vI~~S~~~~~~~~~~i~vinGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~ 380 (612)
...... .. .++.. |+|++.+.||++.
T Consensus 96 ----~~~~~~-~~-~~~~~------------------------------------------------~~g~~~~~k~~~~ 121 (229)
T cd01635 96 ----SLLALS-IG-LADKV------------------------------------------------FVGRLAPEKGLDD 121 (229)
T ss_pred ----HHHHHH-Hh-hcceE------------------------------------------------EEEeecccCCHHH
Confidence 011110 00 11111 9999999999999
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHH---HHHhccceEEeccCCCcchHHHHHH
Q 007215 381 LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD---DSLHGYKVFINPSISDVLCTATAEA 455 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~---~ll~~aDv~V~PS~~E~fgl~llEA 455 (612)
+++++..+.++.++++++++|.+++.......+.+++.. +.++|.+...+ .+++.||++++||..|++|++++||
T Consensus 122 ~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Ea 201 (229)
T cd01635 122 LIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEA 201 (229)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHH
Confidence 999999999888899999999999887776655555543 89999974333 5666699999999999999999999
Q ss_pred HHcCCcEEeeCCCCcc-ccccCCcEEec
Q 007215 456 LAMGKFVICADHPSNE-FFRSFPNCLTY 482 (612)
Q Consensus 456 MA~G~PVVas~~gg~~-~i~~~~~g~l~ 482 (612)
|+||+|||+|+.++.. .+.++.+|+++
T Consensus 202 m~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 202 MACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred HhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 9999999999999854 46667788764
No 76
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.84 E-value=8.7e-20 Score=199.32 Aligned_cols=259 Identities=9% Similarity=0.021 Sum_probs=168.4
Q ss_pred CccEEEECCCchhHHhhhhHHHhhhC-C-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc
Q 007215 251 DADIAILEEPEHLNWYHHGKRWTDKF-N-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD 328 (612)
Q Consensus 251 ~pDVVh~~~p~~l~~~~~~~~~~~~~-~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~ 328 (612)
.-|+|.+|+...+.... ...++. . ++.++.|..++...-.... +....++ +.+ ..||.|-.-+....+
T Consensus 127 ~~d~vwvhDYhl~l~p~---~lr~~~~~~~igfFlHipfP~~e~f~~l-p~r~~il---~gl---l~~dligF~t~~~~~ 196 (456)
T TIGR02400 127 PGDIVWVHDYHLMLLPA---MLRELGVQNKIGFFLHIPFPSSEIYRTL-PWRRELL---EGL---LAYDLVGFQTYDDAR 196 (456)
T ss_pred CCCEEEEecchhhHHHH---HHHhhCCCCeEEEEEeCCCCChHHHhhC-CcHHHHH---HHH---hcCCEEEECCHHHHH
Confidence 45899999865443332 223332 2 6778899887654311111 1111111 111 124666555553221
Q ss_pred --------------------c--CCCcEEEe-CCCCCCCCCCCccc--------hhhhhhccCCCCcEEEEEeccCCccC
Q 007215 329 --------------------L--PKSVICNV-HGVNPKFLQIGEKV--------ATDREQGQQAFSKGAYFLGKMVWAKG 377 (612)
Q Consensus 329 --------------------~--~~~~i~vi-nGVd~~~f~~~~~~--------~~~~~~~~~~~~~~il~vGrl~~~Kg 377 (612)
+ ...++.++ +|||++.|.+.... ..+.++ +++++|+++||+++.||
T Consensus 197 ~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~VgRLd~~KG 273 (456)
T TIGR02400 197 NFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVDRLDYSKG 273 (456)
T ss_pred HHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEccccccccC
Confidence 0 11335566 79999887543211 123333 35679999999999999
Q ss_pred HHHHHHHHHHhhccCCC----eEEEEEe-----cCCCHHHHHHHHHHc--------C-C---ceEEec-CCCCHH--HHH
Q 007215 378 YRELIDLLAKHKNDLDG----FKLDVFG-----NGEDAYEVQSAAKRL--------D-L---NLNFQK-GRDHAD--DSL 433 (612)
Q Consensus 378 ~~~Li~A~~~l~~~~~~----~~LvIvG-----~g~~~~~l~~~~~~l--------~-l---~v~f~g-~~~~~~--~ll 433 (612)
++.+++|++++.++.|+ +.|+++| .+++...+++.++++ + . .+.+++ .++..+ ++|
T Consensus 274 i~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly 353 (456)
T TIGR02400 274 LPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALY 353 (456)
T ss_pred HHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHH
Confidence 99999999999887775 5577774 334445555555443 1 1 255544 444444 899
Q ss_pred hccceEEeccCCCcchHHHHHHHHcCCc----EEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC---
Q 007215 434 HGYKVFINPSISDVLCTATAEALAMGKF----VICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT--- 504 (612)
Q Consensus 434 ~~aDv~V~PS~~E~fgl~llEAMA~G~P----VVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~--- 504 (612)
+.||+||+||..||||++++||||||+| ||+|+.+|....+. +|+++ .|++++|++|.++++++++.++
T Consensus 354 ~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~--~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~ 431 (456)
T TIGR02400 354 RAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN--GALLVNPYDIDGMADAIARALTMPLEEREERH 431 (456)
T ss_pred HhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC--CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999 99998877433333 67777 8999999999999965544322
Q ss_pred ---HHHHhcCCHHHHHHHHHHHH
Q 007215 505 ---PEQRYNLSWEAATQRFIEYS 524 (612)
Q Consensus 505 ---~~~~~~~sWe~~~~~~~~~y 524 (612)
+.....+++...+++|++..
T Consensus 432 ~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 432 RAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHh
Confidence 22234578888888888643
No 77
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.84 E-value=1.9e-19 Score=190.41 Aligned_cols=234 Identities=17% Similarity=0.127 Sum_probs=156.9
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+||++.+.... .. ...++..+ |++...+.... ..+++++.+ .+|.+
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~~-~~--~~~~~~~~~p~v~~~~~~~~----------------~~~~~~~~~-~~d~i 139 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVSG-PA--GLAAKLLGIPLFHHEQNAVP----------------GLTNKLLSR-FAKKV 139 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccH-HH--HHHHHHcCCCEEEECCCCCc----------------cHHHHHHHH-HhCee
Confidence 456667778999999998765322 22 22344445 77633221110 112344444 68999
Q ss_pred EEeChhhhccCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHH-HHHHHHHhhccCCCeEE
Q 007215 320 LRLSAATQDLPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRE-LIDLLAKHKNDLDGFKL 397 (612)
Q Consensus 320 I~~S~~~~~~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~-Li~A~~~l~~~~~~~~L 397 (612)
+++|+.+++..+ ..++ ||+|..++.+.. .+.+++++++.++++++|+....|++.. +++|++++.+. +.++
T Consensus 140 i~~~~~~~~~~~--~~~i~n~v~~~~~~~~~---~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~ 212 (348)
T TIGR01133 140 LISFPGAKDHFE--AVLVGNPVRQEIRSLPV---PRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQI 212 (348)
T ss_pred EECchhHhhcCC--ceEEcCCcCHHHhcccc---hhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEE
Confidence 999998877542 2455 899876654321 1234566667788999998877888765 55888888653 4555
Q ss_pred EEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c----
Q 007215 398 DVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-N---- 470 (612)
Q Consensus 398 vIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~---- 470 (612)
++++++.+.+.+++.++++++. +.|. .. +..++++.||++|.+| + +++++|||++|+|+|+++.++ .
T Consensus 213 ~~~~g~~~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~ 286 (348)
T TIGR01133 213 VHQTGKNDLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAADDQY 286 (348)
T ss_pred EEECCcchHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCccchh
Confidence 4444434457788888888865 3344 22 6669999999999875 2 789999999999999998753 2
Q ss_pred ---cccccCCcEEec--C--CHHHHHHHHHHHHhCCCCCCCHHHH
Q 007215 471 ---EFFRSFPNCLTY--K--TSEDFVARVKEALANDPQPLTPEQR 508 (612)
Q Consensus 471 ---~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~~~~~~~ 508 (612)
+.+.++.+|+++ + ++++++++|.+++ ++++.++++.+
T Consensus 287 ~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~ 330 (348)
T TIGR01133 287 YNAKFLEDLGAGLVIRQKELLPEKLLEALLKLL-LDPANLEAMAE 330 (348)
T ss_pred hHHHHHHHCCCEEEEecccCCHHHHHHHHHHHH-cCHHHHHHHHH
Confidence 356667788887 4 4999999999999 55554444444
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.83 E-value=1.5e-19 Score=194.46 Aligned_cols=240 Identities=13% Similarity=0.057 Sum_probs=167.2
Q ss_pred HhHhhhccCCCccEEEECCCch----hHHhhhhHHHh--hhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHH
Q 007215 241 GDTSQFIPSKDADIAILEEPEH----LNWYHHGKRWT--DKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTR 313 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~----l~~~~~~~~~~--~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 313 (612)
..+.+.+.+.+||+||++.|.. ...+. ... ...+ |++.++++.+... ..|+.+
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~---~~~~~~~~~~p~~~~~tD~~~~~-----------------~~w~~~ 149 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLR---WQGKELGKKIPFTTVVTDLGTCH-----------------PTWFHK 149 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHH---HHhhccCCCCCEEEEECCCCCcC-----------------cccccC
Confidence 4566777789999999976552 21111 122 1234 7776664432111 111122
Q ss_pred hcCCeEEEeChhhhc------cCCCcEEEe-CCCCCCCCCCC-ccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHH
Q 007215 314 AYCDKVLRLSAATQD------LPKSVICNV-HGVNPKFLQIG-EKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLL 385 (612)
Q Consensus 314 ~~ad~vI~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~-~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~ 385 (612)
.+|.++++|+.+++ ++++++.++ ++++++++.+. .....+.++++++++++++++|+....|++..+++++
T Consensus 150 -~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l 228 (382)
T PLN02605 150 -GVTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARAL 228 (382)
T ss_pred -CCCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHH
Confidence 58999999997655 455778877 68887766533 3445677888888889999999999999999999999
Q ss_pred HHhhc----cCCCeE-EEEEecCCC-HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcC
Q 007215 386 AKHKN----DLDGFK-LDVFGNGED-AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMG 459 (612)
Q Consensus 386 ~~l~~----~~~~~~-LvIvG~g~~-~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G 459 (612)
..+.. ..++.+ ++++|.++. .+.+++. ..+..++|+|+.++..++|+.||++|.++ .|++++||||||
T Consensus 229 ~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~--~~~~~v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g 302 (382)
T PLN02605 229 GDSLYDKNLGKPIGQVVVICGRNKKLQSKLESR--DWKIPVKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRG 302 (382)
T ss_pred HHhhccccccCCCceEEEEECCCHHHHHHHHhh--cccCCeEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcC
Confidence 76531 134554 667776532 2344433 12335899999998889999999999865 488999999999
Q ss_pred CcEEeeCC------CCccccccCCcEEecCCHHHHHHHHHHHHhCCCCCCCHHH
Q 007215 460 KFVICADH------PSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQ 507 (612)
Q Consensus 460 ~PVVas~~------gg~~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~~~~ 507 (612)
+|||+++. |+.+.+.+...|+.+.|+++++++|.+++.++++.++++.
T Consensus 303 ~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~ 356 (382)
T PLN02605 303 LPIILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMS 356 (382)
T ss_pred CCEEEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999984 3345566666677679999999999999965355444333
No 79
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.83 E-value=8.1e-19 Score=189.32 Aligned_cols=254 Identities=14% Similarity=0.143 Sum_probs=170.4
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+|++..|... ... .+.....+ |++. +++++.. . ..|..+ .+|.+
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~-~~~--l~~~~~~~iP~~~-v~td~~~---~--------------~~w~~~-~~d~~ 151 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPV-MSV--LTEQFNINIPVAT-VMTDYRL---H--------------KNWITP-YSTRY 151 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHH-HHH--HHHhcCCCCCEEE-EeCCCCc---c--------------cccccC-CCCEE
Confidence 56777888899999999877643 221 23334445 7754 4554310 0 011122 58999
Q ss_pred EEeChhhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEE-EEEeccCCccCHHHHHHHHHHhhcc
Q 007215 320 LRLSAATQD------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGA-YFLGKMVWAKGYRELIDLLAKHKND 391 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~i-l~vGrl~~~Kg~~~Li~A~~~l~~~ 391 (612)
++.|+.+++ ++.+++.++ +++++.+..+.+....+.+++++++++++ ++.|++...||++.+++++.+ .
T Consensus 152 ~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~---~ 228 (391)
T PRK13608 152 YVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILA---K 228 (391)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHHh---c
Confidence 999998765 344667776 56766554443344455667776666654 578999989999999998632 3
Q ss_pred CCCeEEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC-CC
Q 007215 392 LDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD-HP 468 (612)
Q Consensus 392 ~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~-~g 468 (612)
.+++++++++++.. .+.+++.... ...+.|+|+.++..++++.||++|. ++.|++++||||||+|+|+++ .+
T Consensus 229 ~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~~~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~p 303 (391)
T PRK13608 229 SANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLNPAP 303 (391)
T ss_pred CCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEeccchHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCC
Confidence 35788866643321 1333332221 2248899999888899999999996 357899999999999999996 44
Q ss_pred Ccc-----ccccCCcEEecCCHHHHHHHHHHHHhCCCCCCCHHH------HhcCCHHHHHHHHHHHHh
Q 007215 469 SNE-----FFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQ------RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 469 g~~-----~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~~~~------~~~~sWe~~~~~~~~~y~ 525 (612)
+.+ .+.+...|...+|+++++++|.++++ +++.++++. ...++++.+++.+.+.++
T Consensus 304 gqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~-~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 304 GQELENALYFEEKGFGKIADTPEEAIKIVASLTN-GNEQLTNMISTMEQDKIKYATQTICRDLLDLIG 370 (391)
T ss_pred CcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Confidence 432 22334456566999999999999994 455444333 235789999999988876
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.79 E-value=1.2e-18 Score=201.46 Aligned_cols=267 Identities=12% Similarity=0.087 Sum_probs=171.0
Q ss_pred CccEEEECCCchhHHhhhhHHHhhhCC--CEEEEEeCCcHhHHHHhccchhHHHHHHHHH----------HHHHHh--cC
Q 007215 251 DADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGALQAFFVKHIN----------NWVTRA--YC 316 (612)
Q Consensus 251 ~pDVVh~~~p~~l~~~~~~~~~~~~~~--pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~----------~~~~~~--~a 316 (612)
.-|+|-+|+...+.... ...++.. ++.++.|..++.+.-.... +....+++.+- .+...+ .|
T Consensus 147 ~~d~vWvhDYhL~llp~---~lR~~~~~~~igfFlHiPFPs~e~fr~l-p~r~~il~gll~aDligF~t~~y~r~Fl~~~ 222 (797)
T PLN03063 147 EGDVVWCHDYHLMFLPQ---YLKEYNNKMKVGWFLHTPFPSSEIYKTL-PSRSELLRAVLTADLIGFHTYDFARHFLSAC 222 (797)
T ss_pred CCCEEEEecchhhhHHH---HHHHhCCCCcEEEEecCCCCCHHHHhhC-CCHHHHHHHHhcCCEEEeCCHHHHHHHHHHH
Confidence 34899999855443332 2333333 8888999998865422111 11122221111 010000 13
Q ss_pred CeEEEeChhhhcc--C--CCcEEEe-CCCCCCCCCCCccc--------hhhhhhccCCCCcEEEEEeccCCccCHHHHHH
Q 007215 317 DKVLRLSAATQDL--P--KSVICNV-HGVNPKFLQIGEKV--------ATDREQGQQAFSKGAYFLGKMVWAKGYRELID 383 (612)
Q Consensus 317 d~vI~~S~~~~~~--~--~~~i~vi-nGVd~~~f~~~~~~--------~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~ 383 (612)
+.++.++.....+ . ..++.++ +|||++.|.+.... ..+..+ +++++|+++||+++.||++.+|+
T Consensus 223 ~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~lIl~VgRLd~~KGi~~lL~ 299 (797)
T PLN03063 223 TRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFF---AGRKVILGVDRLDMIKGIPQKYL 299 (797)
T ss_pred HHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhc---CCCeEEEEecccccccCHHHHHH
Confidence 3444333221111 1 1345566 79998877543211 112222 35679999999999999999999
Q ss_pred HHHHhhccCCCeE----EEEEe-----cCCCHHHHHHHHHHcC--Cc----------eEEec-CCCCHH--HHHhccceE
Q 007215 384 LLAKHKNDLDGFK----LDVFG-----NGEDAYEVQSAAKRLD--LN----------LNFQK-GRDHAD--DSLHGYKVF 439 (612)
Q Consensus 384 A~~~l~~~~~~~~----LvIvG-----~g~~~~~l~~~~~~l~--l~----------v~f~g-~~~~~~--~ll~~aDv~ 439 (612)
|++++.+++|+++ |+.++ .++..+.+++.++++. ++ +.+++ .++..+ .+|+.||+|
T Consensus 300 Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvf 379 (797)
T PLN03063 300 AFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVM 379 (797)
T ss_pred HHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEE
Confidence 9999988888753 44333 3334455666665553 21 34443 445455 999999999
Q ss_pred EeccCCCcchHHHHHHHHcCCc----EEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHH
Q 007215 440 INPSISDVLCTATAEALAMGKF----VICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQ 507 (612)
Q Consensus 440 V~PS~~E~fgl~llEAMA~G~P----VVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~ 507 (612)
|+||..||||++++||||||+| +|+|+.+|..+.. +.+|+++ .|++++|++|.++|+.+++.++ ...
T Consensus 380 vvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l-~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~ 458 (797)
T PLN03063 380 LVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL-GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQY 458 (797)
T ss_pred EeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh-cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999988755443 4467777 8999999999999975554322 233
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 007215 508 RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 508 ~~~~sWe~~~~~~~~~y~ 525 (612)
...++|..-++.|++.++
T Consensus 459 v~~~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 459 VKTHSAQKWADDFMSELN 476 (797)
T ss_pred hhhCCHHHHHHHHHHHHH
Confidence 456899999999999887
No 81
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.73 E-value=1.9e-16 Score=169.44 Aligned_cols=209 Identities=16% Similarity=0.158 Sum_probs=152.7
Q ss_pred cCCeEEEeChhhhc--------cCCCcEEEe-CCCCCCCCCCC-------ccchhhhhhccCCCCcEEEEEeccCCccCH
Q 007215 315 YCDKVLRLSAATQD--------LPKSVICNV-HGVNPKFLQIG-------EKVATDREQGQQAFSKGAYFLGKMVWAKGY 378 (612)
Q Consensus 315 ~ad~vI~~S~~~~~--------~~~~~i~vi-nGVd~~~f~~~-------~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~ 378 (612)
.+|++++.|..+.. +....+.+. +++|.+.+.++ ...+.+...+....+....-+-++.+.||+
T Consensus 209 ~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~ 288 (495)
T KOG0853|consen 209 LAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQ 288 (495)
T ss_pred ccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCc
Confidence 46888888886544 222334444 88887766542 112222333444445566778899999999
Q ss_pred HHHHHHHHHhhccC-----CCeEEEEEecC-CCH---------HHHHHHHHHcCCc---eEEecCCCCHHHHHhccc---
Q 007215 379 RELIDLLAKHKNDL-----DGFKLDVFGNG-EDA---------YEVQSAAKRLDLN---LNFQKGRDHADDSLHGYK--- 437 (612)
Q Consensus 379 ~~Li~A~~~l~~~~-----~~~~LvIvG~g-~~~---------~~l~~~~~~l~l~---v~f~g~~~~~~~ll~~aD--- 437 (612)
+.+++++..+.... ++.+++++|+. .+. ++++++++++++. +.|+....+.+.+..++|
T Consensus 289 ~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~ 368 (495)
T KOG0853|consen 289 DLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKG 368 (495)
T ss_pred eeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcce
Confidence 99999999887766 46788898832 211 6788889999884 677788888874444444
Q ss_pred eEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-ccccccCCcEEec-CCHH---HHHHHHHHHHhCCCCCCCH-------
Q 007215 438 VFINPSISDVLCTATAEALAMGKFVICADHPS-NEFFRSFPNCLTY-KTSE---DFVARVKEALANDPQPLTP------- 505 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~~~i~~~~~g~l~-~d~~---~la~aI~~ll~~~~~~~~~------- 505 (612)
+|+.|.. |.||++++||||||+|||||+.|| .|.++++.+|+++ .+.+ .+|+++.++. .+++.+.+
T Consensus 369 v~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~-~~p~l~~~~~~~G~~ 446 (495)
T KOG0853|consen 369 VLYQPAN-EHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLR-RDPELWARMGKNGLK 446 (495)
T ss_pred EEecCCC-CCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 7778887 999999999999999999999998 6778889999999 6555 5999999999 55554543
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007215 506 EQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 506 ~~~~~~sWe~~~~~~~~~y~ 525 (612)
...+.|+|....+++.+.-.
T Consensus 447 rV~e~fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 447 RVKEMFSWQHYSERIASVLG 466 (495)
T ss_pred HHHHHHhHHHHHHHHHHHhH
Confidence 33445899888777777666
No 82
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.73 E-value=2.6e-17 Score=190.54 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=136.8
Q ss_pred cEEEe-CCCCCCCCCCCccch----hhhhh-ccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC----eEEEEEec
Q 007215 333 VICNV-HGVNPKFLQIGEKVA----TDREQ-GQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGN 402 (612)
Q Consensus 333 ~i~vi-nGVd~~~f~~~~~~~----~~~~~-~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~----~~LvIvG~ 402 (612)
++.++ +|||++.|.+....+ ....+ ...+++++|+++||+++.||+..+++|++++.+++|+ ++|+++|.
T Consensus 229 ~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~ 308 (726)
T PRK14501 229 RVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAV 308 (726)
T ss_pred EEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEec
Confidence 35666 799988876532111 00111 1124567999999999999999999999999887775 68888873
Q ss_pred C-----CCHHHHHHHHHHc----C-------C-ceE-EecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcC---
Q 007215 403 G-----EDAYEVQSAAKRL----D-------L-NLN-FQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMG--- 459 (612)
Q Consensus 403 g-----~~~~~l~~~~~~l----~-------l-~v~-f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G--- 459 (612)
+ ++..++++.++++ + . .+. |.+.++..+ ++|+.||+|++||..||||++++||||||
T Consensus 309 ~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~ 388 (726)
T PRK14501 309 PSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDG 388 (726)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCC
Confidence 3 2223444444332 2 1 244 456666666 99999999999999999999999999994
Q ss_pred --CcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCC-CCC-----HHHHhcCCHHHHHHHHHHHHh
Q 007215 460 --KFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQ-PLT-----PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 460 --~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~-~~~-----~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+||++...|+.+++. +|+++ .|++++|++|.+++.++.+ +.. +.....++|+..+++|++.|+
T Consensus 389 ~g~~vls~~~G~~~~l~---~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~ 461 (726)
T PRK14501 389 DGVLILSEMAGAAAELA---EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELR 461 (726)
T ss_pred CceEEEecccchhHHhC---cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466666777777665 36776 8999999999999965432 111 222357899999999999998
No 83
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=2.8e-15 Score=154.18 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=153.4
Q ss_pred CCeEEEeChhhhc-----cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCC--CcEEEEEeccCCccCHHHHHHHHHH
Q 007215 316 CDKVLRLSAATQD-----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAF--SKGAYFLGKMVWAKGYRELIDLLAK 387 (612)
Q Consensus 316 ad~vI~~S~~~~~-----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~--~~~il~vGrl~~~Kg~~~Li~A~~~ 387 (612)
.+.++..+....+ ....++.++ ++++++.+... ...+... ...++++|++.+.||++.+++++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAPA-------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAK 223 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecCCcCHHHcCcc-------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHH
Confidence 5788888886433 222344455 79987766542 1111122 2589999999999999999999999
Q ss_pred hhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcE
Q 007215 388 HKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFV 462 (612)
Q Consensus 388 l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PV 462 (612)
+.+..++..+.++|.++.. +.+...+.+++.. +.|+|..++.+ .+++.+|++++||.+|+||++++|||++|+||
T Consensus 224 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pv 303 (381)
T COG0438 224 LKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPV 303 (381)
T ss_pred hhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcE
Confidence 9887777999999999883 6666677777653 88889888333 78888999999999999999999999999999
Q ss_pred EeeCCCCccc-cccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHh
Q 007215 463 ICADHPSNEF-FRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 463 Vas~~gg~~~-i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
|+++.++..+ +.++.+|+++ .+.+++++++..++++. +..+ +.....|+|+..++++.+.+.
T Consensus 304 i~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 304 IASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDP-ELREELGEAARERVEEEFSWERIAEQLLELYE 375 (381)
T ss_pred EECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999987544 4444457755 46899999999999554 2111 222267999999999999887
No 84
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.70 E-value=1e-15 Score=163.01 Aligned_cols=240 Identities=11% Similarity=0.014 Sum_probs=155.8
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+||++......+.. ..++++.+ |++.+.++... +.. +..... .+......+|.+
T Consensus 78 ~~l~~~l~~~~pDvV~~~g~~~~~~~~--~~aa~~~~iPvv~~~~g~~s-~~~----~~~~~~-----~r~~~~~~ad~~ 145 (363)
T cd03786 78 IGLEAVLLEEKPDLVLVLGDTNETLAA--ALAAFKLGIPVAHVEAGLRS-FDR----GMPDEE-----NRHAIDKLSDLH 145 (363)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHH--HHHHHHcCCCEEEEeccccc-CCC----CCCchH-----HHHHHHHHhhhc
Confidence 456666777899999998643333322 34555567 88765554221 100 000011 111122257999
Q ss_pred EEeChhhhc------cCCCcEEEe-CCC-CCCCCCCC-c-cchhhhhhccCCCCcEEEEEeccCC---ccCHHHHHHHHH
Q 007215 320 LRLSAATQD------LPKSVICNV-HGV-NPKFLQIG-E-KVATDREQGQQAFSKGAYFLGKMVW---AKGYRELIDLLA 386 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi-nGV-d~~~f~~~-~-~~~~~~~~~~~~~~~~il~vGrl~~---~Kg~~~Li~A~~ 386 (612)
+++|+..++ ++++++.++ |++ |...+.+. . ....+..+++++.+.++++.|+... .||++.+++|++
T Consensus 146 ~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~ 225 (363)
T cd03786 146 FAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALA 225 (363)
T ss_pred cCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHH
Confidence 999997655 445778777 664 53322211 1 1112234555555556778898765 799999999999
Q ss_pred HhhccCCCeEEEEEecCCCHHHHHHHHHHcCC---ceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCc
Q 007215 387 KHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDL---NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKF 461 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l---~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~P 461 (612)
++.+. ++.+++.|.++..+.+++.++++++ .+.|.+.....+ .+++.||++|.+|- | .+.|||+||+|
T Consensus 226 ~l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~P 298 (363)
T cd03786 226 ELAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVP 298 (363)
T ss_pred HHHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCC
Confidence 98654 5777777777767888888887764 388887655444 88999999999984 3 47999999999
Q ss_pred EEeeCCC-CccccccCCcEEec-CCHHHHHHHHHHHHhCC
Q 007215 462 VICADHP-SNEFFRSFPNCLTY-KTSEDFVARVKEALAND 499 (612)
Q Consensus 462 VVas~~g-g~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~ 499 (612)
||+++.. ...+..+...+..+ .|+++++++|.++++++
T Consensus 299 vI~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 299 VLNLRDRTERPETVESGTNVLVGTDPEAILAAIEKLLSDE 338 (363)
T ss_pred EEeeCCCCccchhhheeeEEecCCCHHHHHHHHHHHhcCc
Confidence 9999754 34444443333444 57999999999999543
No 85
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.68 E-value=4.4e-16 Score=166.44 Aligned_cols=243 Identities=12% Similarity=0.067 Sum_probs=152.9
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCe
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~ 318 (612)
+..+.+.+.+.+||+||++........+ ...+.+.+ |++.+-+... ..... ..+.. ...+.+....||.
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la~--a~aa~~~~ipv~h~~~g~~--s~~~~--~~~~~----~~~r~~~~~~ad~ 144 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLAG--ALAAFYLQIPVGHVEAGLR--TGDRY--SPMPE----EINRQLTGHIADL 144 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHH--HHHHHHhCCCEEEEeCCCC--cCCCC--CCCcc----HHHHHHHHHHHHh
Confidence 4567778888999999998643332322 34556667 8764433221 00000 00111 1223222335799
Q ss_pred EEEeChhhhc------cCCCcEEEe-CCC-CCCCCCC--CccchhhhhhccCCCCcEEEEEe-cc-CCccCHHHHHHHHH
Q 007215 319 VLRLSAATQD------LPKSVICNV-HGV-NPKFLQI--GEKVATDREQGQQAFSKGAYFLG-KM-VWAKGYRELIDLLA 386 (612)
Q Consensus 319 vI~~S~~~~~------~~~~~i~vi-nGV-d~~~f~~--~~~~~~~~~~~~~~~~~~il~vG-rl-~~~Kg~~~Li~A~~ 386 (612)
+++.|+..++ .+++++.++ |++ |...... ......+.+++ ..++++++.+ |. ...||++.+++|+.
T Consensus 145 ~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~--~~~~~vl~~~hr~~~~~k~~~~ll~a~~ 222 (365)
T TIGR00236 145 HFAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG--EDKRYILLTLHRRENVGEPLENIFKAIR 222 (365)
T ss_pred ccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcC--CCCCEEEEecCchhhhhhHHHHHHHHHH
Confidence 9999997655 445678888 775 4322111 11222333443 2234566555 43 34589999999999
Q ss_pred HhhccCCCeEEEEEecCCCHHHHHHHHHHcCC--ceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcE
Q 007215 387 KHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDL--NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFV 462 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l--~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PV 462 (612)
++.++.+++++++.|.+... ....+.+.++. ++.|++.....+ .+++.+|+++.+| |..++|||+||+||
T Consensus 223 ~l~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~Pv 296 (365)
T TIGR00236 223 EIVEEFEDVQIVYPVHLNPV-VREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPV 296 (365)
T ss_pred HHHHHCCCCEEEEECCCChH-HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCE
Confidence 98877788888888644322 11123333343 388999877666 8899999999887 55689999999999
Q ss_pred Eee-CCCCccccccCCcEEec-CCHHHHHHHHHHHHhCCCC
Q 007215 463 ICA-DHPSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQ 501 (612)
Q Consensus 463 Vas-~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~ 501 (612)
|++ +.|+.+++.....+.++ .|+++++++|.++++ +++
T Consensus 297 I~~~~~~~~~e~~~~g~~~lv~~d~~~i~~ai~~ll~-~~~ 336 (365)
T TIGR00236 297 LVLRDTTERPETVEAGTNKLVGTDKENITKAAKRLLT-DPD 336 (365)
T ss_pred EECCCCCCChHHHhcCceEEeCCCHHHHHHHHHHHHh-ChH
Confidence 997 66776655554455556 899999999999995 444
No 86
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.68 E-value=2.8e-14 Score=143.11 Aligned_cols=246 Identities=14% Similarity=0.121 Sum_probs=169.4
Q ss_pred hhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcH--hHHHHhc---cchhHHHHHHHHHHHHHHhc---
Q 007215 245 QFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL--EYIKREK---NGALQAFFVKHINNWVTRAY--- 315 (612)
Q Consensus 245 ~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~--~~~~~~~---~~~~~~~~~~~i~~~~~~~~--- 315 (612)
..+.+.-|||.+=..-+.+.+.. .++..+ |+++.+|-... +.+.... ...+..|-.-...+++...+
T Consensus 144 Eai~r~~Pdi~IDtMGY~fs~p~----~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~ 219 (465)
T KOG1387|consen 144 EAIIRFPPDIFIDTMGYPFSYPI----FRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSA 219 (465)
T ss_pred HHHHhCCchheEecCCCcchhHH----HHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhc
Confidence 34447889999876555554443 333445 99999995432 2222111 11133333233334433333
Q ss_pred ---CCeEEEeChhhhc-----cCCCcEEEe-CCCCCCCCCCCccchhhhhhcc-CCCCcEEEEEeccCCccCHHHHHH--
Q 007215 316 ---CDKVLRLSAATQD-----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQ-QAFSKGAYFLGKMVWAKGYRELID-- 383 (612)
Q Consensus 316 ---ad~vI~~S~~~~~-----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~-~~~~~~il~vGrl~~~Kg~~~Li~-- 383 (612)
||.+++.|.++++ .......++ |..+++.+ +...+. ....+.++++|.+.|+||.. +++
T Consensus 220 G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~e~l--------ks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~ 290 (465)
T KOG1387|consen 220 GSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCSTEDL--------KSKFGTEGERENQLLSLAQFRPEKNHK-ILQLF 290 (465)
T ss_pred cccceEEEecchhhHHHHHHHhhccceeEEcCCCCHHHH--------HHHhcccCCcceEEEEEeecCcccccH-HHHHH
Confidence 7999999998877 233445555 66665422 222222 23356889999999999999 444
Q ss_pred HHHHhhc----cCCCeEEEEEecCCCH------HHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCCCcch
Q 007215 384 LLAKHKN----DLDGFKLDVFGNGEDA------YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLC 449 (612)
Q Consensus 384 A~~~l~~----~~~~~~LvIvG~g~~~------~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fg 449 (612)
|+-..+. ..++++|+++|+-..+ ..++.+++++.++ |.|.-.++-++ +++..|.+-|+.-..|-||
T Consensus 291 Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFG 370 (465)
T KOG1387|consen 291 ALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFG 370 (465)
T ss_pred HHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcc
Confidence 4433322 2267999999975433 4566778888887 88988887777 9999999999999999999
Q ss_pred HHHHHHHHcCCcEEeeCCCC--cccccc---CCcEEecCCHHHHHHHHHHHHhCCCCCC
Q 007215 450 TATAEALAMGKFVICADHPS--NEFFRS---FPNCLTYKTSEDFVARVKEALANDPQPL 503 (612)
Q Consensus 450 l~llEAMA~G~PVVas~~gg--~~~i~~---~~~g~l~~d~~~la~aI~~ll~~~~~~~ 503 (612)
+.+.|+||+|+-.|+.+.|| .+++.+ ..+|++..+.++.|+++.+++..+.+.+
T Consensus 371 IsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r 429 (465)
T KOG1387|consen 371 ISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDER 429 (465)
T ss_pred hhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHH
Confidence 99999999999999999988 466655 3689999999999999999998777643
No 87
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.64 E-value=4.1e-16 Score=141.99 Aligned_cols=130 Identities=24% Similarity=0.307 Sum_probs=93.9
Q ss_pred cEEEEEeccCCccCHHHHHH-HHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEec
Q 007215 364 KGAYFLGKMVWAKGYRELID-LLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 442 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~-A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~P 442 (612)
+.++++|++.+.|+++.+++ +++++.++.|+++|.|+|.+++ +++++ . ..+|+|+|.+++..++++.||+++.|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~-~--~~~v~~~g~~~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL-R--RPNVRFHGFVEELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH-H--HCTEEEE-S-HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh-c--CCCEEEcCCHHHHHHHHHhCCEEEEE
Confidence 57889999999999999999 9999999999999999999877 24444 1 22599999995444999999999999
Q ss_pred cC-CCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHhC
Q 007215 443 SI-SDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALAN 498 (612)
Q Consensus 443 S~-~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~ 498 (612)
+. .++++++++|||++|+|||+++.+..+.+.....+.++ +|+++++++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 86 58999999999999999999998544444444455554 9999999999999853
No 88
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.63 E-value=7.7e-15 Score=155.00 Aligned_cols=219 Identities=15% Similarity=0.080 Sum_probs=141.7
Q ss_pred hhhccCCCc-cEEEECCCchhHH--hhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 244 SQFIPSKDA-DIAILEEPEHLNW--YHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 244 ~~~l~~~~p-DVVh~~~p~~l~~--~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
...+.+.++ |+||++.|..+.. ........++.+ |++.++|+.++..... . .. ....++.+.+ .||.+
T Consensus 56 ~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~--~----~~-~~~~~~~~~~-~aD~i 127 (333)
T PRK09814 56 DGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDS--N----YY-LMKEEIDMLN-LADVL 127 (333)
T ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhccc--c----ch-hhHHHHHHHH-hCCEE
Confidence 334555666 9999999876542 121122333446 9999999987653311 1 11 1333444444 59999
Q ss_pred EEeChhhhcc------CCCcEEEeCCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCC
Q 007215 320 LRLSAATQDL------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLD 393 (612)
Q Consensus 320 I~~S~~~~~~------~~~~i~vinGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~ 393 (612)
|++|+.+++. .++++.+++..+... . ...+. ....++.++|+|++...+++ + . ..+
T Consensus 128 I~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~----~-~~~~~---~~~~~~~i~yaG~l~k~~~l----~---~---~~~ 189 (333)
T PRK09814 128 IVHSKKMKDRLVEEGLTTDKIIVQGIFDYLN----D-IELVK---TPSFQKKINFAGNLEKSPFL----K---N---WSQ 189 (333)
T ss_pred EECCHHHHHHHHHcCCCcCceEecccccccc----c-ccccc---cccCCceEEEecChhhchHH----H---h---cCC
Confidence 9999988772 234555554333210 0 00000 11235689999999844321 1 1 236
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccC-----------CCcchHHHHHHHHcCC
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSI-----------SDVLCTATAEALAMGK 460 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~-----------~E~fgl~llEAMA~G~ 460 (612)
+++|+|+|.|+..+ ....+|.|.|.++..+ ++++. |+.+.+.. .-.+|.++.|+||||+
T Consensus 190 ~~~l~i~G~g~~~~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~ 261 (333)
T PRK09814 190 GIKLTVFGPNPEDL-------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL 261 (333)
T ss_pred CCeEEEECCCcccc-------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC
Confidence 78999999998654 2222499999999888 66776 54444321 1357889999999999
Q ss_pred cEEeeCCCCc-cccccCCcEEecCCHHHHHHHHHHHH
Q 007215 461 FVICADHPSN-EFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 461 PVVas~~gg~-~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
|||+++.++. +.+.++.+|+++++.++++++|.++.
T Consensus 262 PVI~~~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~ 298 (333)
T PRK09814 262 PVIVWSKAAIADFIVENGLGFVVDSLEELPEIIDNIT 298 (333)
T ss_pred CEEECCCccHHHHHHhCCceEEeCCHHHHHHHHHhcC
Confidence 9999999884 55566889999999999999998853
No 89
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.57 E-value=3.1e-14 Score=152.84 Aligned_cols=242 Identities=11% Similarity=0.047 Sum_probs=149.2
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCe
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~ 318 (612)
...+.+.+.+.+||+||+.....+ +.. .....++.+ |++...+... +. +......+ +.+ .+|.
T Consensus 74 ~~~~~~~l~~~kPdivi~~~~~~~-~~~-~a~~a~~~~ip~i~~~~~~~--~~----------~~~~~~~~-~~~-~~d~ 137 (380)
T PRK00025 74 RRRLKRRLLAEPPDVFIGIDAPDF-NLR-LEKKLRKAGIPTIHYVSPSV--WA----------WRQGRAFK-IAK-ATDH 137 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC-CHH-HHHHHHHCCCCEEEEeCCch--hh----------cCchHHHH-HHH-HHhh
Confidence 455677778899999999653211 111 012344456 8776544321 11 00011112 122 5789
Q ss_pred EEEeChhhhc-cCC--CcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEE-EEe-ccCCc-cCHHHHHHHHHHhhcc
Q 007215 319 VLRLSAATQD-LPK--SVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAY-FLG-KMVWA-KGYRELIDLLAKHKND 391 (612)
Q Consensus 319 vI~~S~~~~~-~~~--~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il-~vG-rl~~~-Kg~~~Li~A~~~l~~~ 391 (612)
+++.|+..++ +.+ ..+.++ |.+.............+.++++++++++++ +.| |.... ++.+.+++|++.+.++
T Consensus 138 i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~ 217 (380)
T PRK00025 138 VLALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQR 217 (380)
T ss_pred heeCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987655 222 123333 333222211122334556677766666654 444 33333 4578999999999877
Q ss_pred CCCeEEEEEec-CCCHHHHHHHHHHc-CCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEee----
Q 007215 392 LDGFKLDVFGN-GEDAYEVQSAAKRL-DLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA---- 465 (612)
Q Consensus 392 ~~~~~LvIvG~-g~~~~~l~~~~~~l-~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas---- 465 (612)
.++++++++|+ ++..+.+++.++++ ++.+.+.. .+..++++.||++|.+| |.+++|||+||+|+|++
T Consensus 218 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~ 290 (380)
T PRK00025 218 YPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD--GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVS 290 (380)
T ss_pred CCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccC
Confidence 78899999986 55567788888777 77766654 35569999999999997 78888999999999988
Q ss_pred -------------CCCCccccc-cCC--cEEec--CCHHHHHHHHHHHHhCCCCCCCH
Q 007215 466 -------------DHPSNEFFR-SFP--NCLTY--KTSEDFVARVKEALANDPQPLTP 505 (612)
Q Consensus 466 -------------~~gg~~~i~-~~~--~g~l~--~d~~~la~aI~~ll~~~~~~~~~ 505 (612)
+.++...+. ++. .+++. .|++++++++.+++ ++++.++.
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~ 347 (380)
T PRK00025 291 PLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLL-ADGARRQA 347 (380)
T ss_pred HHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHh-cCHHHHHH
Confidence 223322222 222 33444 68999999999999 44544443
No 90
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.55 E-value=2e-13 Score=149.04 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=124.8
Q ss_pred EEEe-CCCCCCCCCCCc--------cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC----eEEEEE
Q 007215 334 ICNV-HGVNPKFLQIGE--------KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVF 400 (612)
Q Consensus 334 i~vi-nGVd~~~f~~~~--------~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~----~~LvIv 400 (612)
+.++ .|||++.|.... ....+++++ ++++|++++|++..||+...++|++++.+++|+ ++|+.+
T Consensus 250 v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi 326 (487)
T TIGR02398 250 LGAHPVGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTA 326 (487)
T ss_pred EEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEE
Confidence 4445 499988774331 122344443 578999999999999999999999999888885 689998
Q ss_pred ecCCC---------HHHHHHHHHHc-------CCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCC
Q 007215 401 GNGED---------AYEVQSAAKRL-------DLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK 460 (612)
Q Consensus 401 G~g~~---------~~~l~~~~~~l-------~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~ 460 (612)
|.+.. ..++++++.+. +.. +.|.+.++..+ .+|+.|||++.+|..||++++..|+|||+.
T Consensus 327 ~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~ 406 (487)
T TIGR02398 327 CVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQG 406 (487)
T ss_pred eCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhc
Confidence 87531 24455555543 222 34567777666 899999999999999999999999999998
Q ss_pred ----cEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCC
Q 007215 461 ----FVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQ 501 (612)
Q Consensus 461 ----PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~ 501 (612)
|+|.|..+|..... .+++++ .|++++|++|.++|+.+.+
T Consensus 407 ~~~GvLILSefaGaa~~l--~~AllVNP~d~~~~A~ai~~AL~m~~~ 451 (487)
T TIGR02398 407 LLDGVLVLSEFAGAAVEL--KGALLTNPYDPVRMDETIYVALAMPKA 451 (487)
T ss_pred CCCCCEEEeccccchhhc--CCCEEECCCCHHHHHHHHHHHHcCCHH
Confidence 99999988854333 246777 8999999999999966553
No 91
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.4e-11 Score=124.07 Aligned_cols=255 Identities=12% Similarity=0.079 Sum_probs=169.1
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhcc--chhHHHHHHHHHHHHHHhcCCeEEEeChh
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKN--GALQAFFVKHINNWVTRAYCDKVLRLSAA 325 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ad~vI~~S~~ 325 (612)
...+|++.+++|..+..+..........+ +.+...|+......-.... ....-.+.++.|+++.+ .||.-+|++++
T Consensus 101 ~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk-~a~~nLcVT~A 179 (444)
T KOG2941|consen 101 LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGK-LADYNLCVTKA 179 (444)
T ss_pred ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhc-ccccchhhHHH
Confidence 57899999988765544431222223344 8888888764431111121 22334566888998887 79999999999
Q ss_pred hhc-cCC----CcEEEe---CC---CCCC----CCCC----------C-cc------chhhhhhc------cCCCCcEEE
Q 007215 326 TQD-LPK----SVICNV---HG---VNPK----FLQI----------G-EK------VATDREQG------QQAFSKGAY 367 (612)
Q Consensus 326 ~~~-~~~----~~i~vi---nG---Vd~~----~f~~----------~-~~------~~~~~~~~------~~~~~~~il 367 (612)
|++ +.+ .+..+. |. .+.+ .|.+ . .. ...-++.. ......+++
T Consensus 180 Mr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallv 259 (444)
T KOG2941|consen 180 MREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLV 259 (444)
T ss_pred HHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEE
Confidence 986 111 112221 11 1100 0100 0 00 00011111 112233555
Q ss_pred EEeccCCccCHHHHHHHHHHh-----hc--cCCCeEEEEEecCCCHHHHHHHHHHcCCc-eEE-ecCCC--CHHHHHhcc
Q 007215 368 FLGKMVWAKGYRELIDLLAKH-----KN--DLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNF-QKGRD--HADDSLHGY 436 (612)
Q Consensus 368 ~vGrl~~~Kg~~~Li~A~~~l-----~~--~~~~~~LvIvG~g~~~~~l~~~~~~l~l~-v~f-~g~~~--~~~~ll~~a 436 (612)
......+..++..|++|+... .+ ..|.+-.+|-|.||..+.+.+.++++++. |.+ +.+.. |...+++.|
T Consensus 260 sSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~sa 339 (444)
T KOG2941|consen 260 SSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASA 339 (444)
T ss_pred ecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhcc
Confidence 666688999999999999733 22 23788899999999999999999999988 766 34433 333899999
Q ss_pred c--eEEeccCC-CcchHHHHHHHHcCCcEEeeCCCCc-cccccCCcEEecCCHHHHHHHHHHHHhCCCCCCC
Q 007215 437 K--VFINPSIS-DVLCTATAEALAMGKFVICADHPSN-EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLT 504 (612)
Q Consensus 437 D--v~V~PS~~-E~fgl~llEAMA~G~PVVas~~gg~-~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~ 504 (612)
| |++++|.+ =..|+++++...||+||+|-+.... |.+.+++||++++|.+++++++..++++-|....
T Consensus 340 DlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~ 411 (444)
T KOG2941|consen 340 DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFEDSEELAEQLQMLFKNFPDNAD 411 (444)
T ss_pred ccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHH
Confidence 8 66677665 4579999999999999999999985 4556689999999999999999999987665433
No 92
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.48 E-value=6.2e-12 Score=141.20 Aligned_cols=167 Identities=11% Similarity=0.027 Sum_probs=128.4
Q ss_pred cCCCCcEEEEEeccCCccCHHHHHHHHHHhhc--cC--CCeEEEEEecCCC--------HHHHHHHHHH--cCCceEEec
Q 007215 359 QQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN--DL--DGFKLDVFGNGED--------AYEVQSAAKR--LDLNLNFQK 424 (612)
Q Consensus 359 ~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~--~~--~~~~LvIvG~g~~--------~~~l~~~~~~--l~l~v~f~g 424 (612)
..++.+++++++|+..+||++.+++++.++.+ +. .++++++.|++.. .+.+.+++++ +..+|.|+.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~ 464 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLE 464 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEc
Confidence 34667899999999999999999999888763 21 3689999999874 2455566665 444588877
Q ss_pred CCCCHH--HHHhccceEEe-ccC-CCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEecC--------------CHH
Q 007215 425 GRDHAD--DSLHGYKVFIN-PSI-SDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYK--------------TSE 486 (612)
Q Consensus 425 ~~~~~~--~ll~~aDv~V~-PS~-~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~~--------------d~~ 486 (612)
..+..- .+++.||++++ ||. +|++|++-+-||.-|.+.+++-.|...+..++.||+.++ |++
T Consensus 465 ~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~~~nGf~f~~~~~~~~~~~~d~~da~ 544 (601)
T TIGR02094 465 NYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYDGDNGWAIGDGEEYDDEEEQDRLDAE 544 (601)
T ss_pred CCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCCCCcEEEECCCccccccccccCCCHH
Confidence 776554 88999999999 999 999999999999999999999888765555778999874 577
Q ss_pred HHHHHHHHHH----hCCCC-----CCC---HHHH-h---cCCHHHHHHHHHHHHh
Q 007215 487 DFVARVKEAL----ANDPQ-----PLT---PEQR-Y---NLSWEAATQRFIEYSE 525 (612)
Q Consensus 487 ~la~aI~~ll----~~~~~-----~~~---~~~~-~---~~sWe~~~~~~~~~y~ 525 (612)
+|-++|++.+ .+++. .+. +... . .|||++++++|.+.|=
T Consensus 545 ~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 545 ALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 8888887655 13222 233 2222 2 5999999999999874
No 93
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.44 E-value=1.4e-12 Score=140.33 Aligned_cols=235 Identities=10% Similarity=0.022 Sum_probs=146.4
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+|+..+-..+.+.. .+.++..+ |++..+. ++....... -.+.+.+ +||.+
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~~~~~~~~--a~aa~~~gip~v~~i~---P~~waw~~~----------~~r~l~~-~~d~v 142 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDAPDFNLTK--ELKKKDPGIKIIYYIS---PQVWAWRKW----------RAKKIEK-ATDFL 142 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccHHH--HHHHhhCCCCEEEEeC---CcHhhcCcc----------hHHHHHH-HHhHh
Confidence 456667778999999996632222221 23555566 8774331 121111000 1333333 68999
Q ss_pred EEeChhhhcc-CC--CcEEEe-CCCCCCCCCC-CccchhhhhhccCCCCcEEEEEe--ccCC-ccCHHHHHHHHHHhhcc
Q 007215 320 LRLSAATQDL-PK--SVICNV-HGVNPKFLQI-GEKVATDREQGQQAFSKGAYFLG--KMVW-AKGYRELIDLLAKHKND 391 (612)
Q Consensus 320 I~~S~~~~~~-~~--~~i~vi-nGVd~~~f~~-~~~~~~~~~~~~~~~~~~il~vG--rl~~-~Kg~~~Li~A~~~l~~~ 391 (612)
+++++...++ .+ .+..++ |++..+.... ..+...++++++++++++|+.+| |..+ .|++..+++|++.+.+.
T Consensus 143 ~~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~ 222 (385)
T TIGR00215 143 LAILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQ 222 (385)
T ss_pred hccCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHh
Confidence 9999976553 22 244445 6553332211 23334556777877778877653 6655 78999999999999888
Q ss_pred CCCeEEEEEe-cCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 392 LDGFKLDVFG-NGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 392 ~~~~~LvIvG-~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
.|++++++.+ .+...+.+++..++++.. +.+++. +..++|+.||++|.+| |.+++|||+||+|+|.+...
T Consensus 223 ~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~ 295 (385)
T TIGR00215 223 EPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRM 295 (385)
T ss_pred CCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcC
Confidence 8898886654 444456667766666443 555543 4557999999999999 77888999999999998322
Q ss_pred C-cc-----c------------cccCCcEEe-c---CCHHHHHHHHHHHHhC
Q 007215 469 S-NE-----F------------FRSFPNCLT-Y---KTSEDFVARVKEALAN 498 (612)
Q Consensus 469 g-~~-----~------------i~~~~~g~l-~---~d~~~la~aI~~ll~~ 498 (612)
+ .. . +.+....-. . -+++.+++.+.+++++
T Consensus 296 ~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 296 KPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLEN 347 (385)
T ss_pred CHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcC
Confidence 1 11 0 111111111 1 4689999999999943
No 94
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.40 E-value=7.3e-12 Score=145.08 Aligned_cols=183 Identities=11% Similarity=0.045 Sum_probs=126.7
Q ss_pred CCCCCCCCCCcc--------chhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeE--EEEE-------e
Q 007215 339 GVNPKFLQIGEK--------VATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFK--LDVF-------G 401 (612)
Q Consensus 339 GVd~~~f~~~~~--------~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~--LvIv-------G 401 (612)
|||++.|..... ...+.++ .++++|+.++|++..||+...++||+++.+++|+++ ++++ +
T Consensus 334 GID~~~f~~~~~~~~v~~~~~~lr~~~---~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~ 410 (934)
T PLN03064 334 GIDSDRFIRALETPQVQQHIKELKERF---AGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRT 410 (934)
T ss_pred EEcHHHHHHHhcChhHHHHHHHHHHHh---CCceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCC
Confidence 999887753311 1233343 356799999999999999999999999988888754 5555 4
Q ss_pred cCCCHHHHHH----HHHH----cCC----ceEEec-CCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCC----cE
Q 007215 402 NGEDAYEVQS----AAKR----LDL----NLNFQK-GRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK----FV 462 (612)
Q Consensus 402 ~g~~~~~l~~----~~~~----l~l----~v~f~g-~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~----PV 462 (612)
++++.+.+++ ++.+ +|- .|.++. .++..+ .+|+.||||++||..|||+++..|||||+. ++
T Consensus 411 ~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvL 490 (934)
T PLN03064 411 DVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVL 490 (934)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCe
Confidence 4444344333 3322 221 155533 345454 899999999999999999999999999944 44
Q ss_pred EeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHHHHHh
Q 007215 463 ICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 463 Vas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
|.|...|..... +.+++++ .|++++|++|.++|..+++.++ ......++|..-++.|++...
T Consensus 491 ILSEfaGaa~~L-~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 491 ILSEFAGAAQSL-GAGAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELN 560 (934)
T ss_pred EEeCCCchHHHh-CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 448877644333 3357777 8999999999999975554333 222345688888888777554
No 95
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.33 E-value=7.8e-12 Score=138.67 Aligned_cols=140 Identities=9% Similarity=0.117 Sum_probs=117.5
Q ss_pred cEEEEEe--ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH---HHHHHHHHHcC---------------------
Q 007215 364 KGAYFLG--KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA---YEVQSAAKRLD--------------------- 417 (612)
Q Consensus 364 ~~il~vG--rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~---~~l~~~~~~l~--------------------- 417 (612)
..+++++ |+ ++|.++.+|+|+.++.++.|+++|.+.|.+.+. ..+++++++++
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPI 398 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhc
Confidence 4677888 99 999999999999999999999999999988643 55555554442
Q ss_pred ----------CceEEecCCC--CHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEecCCH
Q 007215 418 ----------LNLNFQKGRD--HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTS 485 (612)
Q Consensus 418 ----------l~v~f~g~~~--~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~~d~ 485 (612)
..|.|.|... +..+.+..+.++|.+|..|+|+ +.+||++.|+|+| +.|..+.|.++.||++++|.
T Consensus 399 ~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li~d~ 475 (519)
T TIGR03713 399 LQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--NKVETDYVEHNKNGYIIDDI 475 (519)
T ss_pred ccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--ecCCceeeEcCCCcEEeCCH
Confidence 2367777777 4449999999999999999999 9999999999999 77889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHH
Q 007215 486 EDFVARVKEALANDPQPLTPEQR 508 (612)
Q Consensus 486 ~~la~aI~~ll~~~~~~~~~~~~ 508 (612)
++|+++|..+| .++..+.....
T Consensus 476 ~~l~~al~~~L-~~~~~wn~~~~ 497 (519)
T TIGR03713 476 SELLKALDYYL-DNLKNWNYSLA 497 (519)
T ss_pred HHHHHHHHHHH-hCHHHHHHHHH
Confidence 99999999999 55544443333
No 96
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.09 E-value=2.9e-09 Score=116.19 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=62.7
Q ss_pred HHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCcc-----cccc-CCcEEec-----CCHHHHHHHHHHHH--
Q 007215 430 DDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE-----FFRS-FPNCLTY-----KTSEDFVARVKEAL-- 496 (612)
Q Consensus 430 ~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~-----~i~~-~~~g~l~-----~d~~~la~aI~~ll-- 496 (612)
++++..||+.|+||++|++|.+.+|+.|+|+|.|+|+..|.. .+.+ ...|..+ .+.++.+++|.+.+
T Consensus 464 ~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~ 543 (633)
T PF05693_consen 464 YDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYK 543 (633)
T ss_dssp HHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHH
T ss_pred HHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 399999999999999999999999999999999999987632 2222 2334433 55555555555444
Q ss_pred --hCCCCCCC------HHHHhcCCHHHHHHHHHHHHhc
Q 007215 497 --ANDPQPLT------PEQRYNLSWEAATQRFIEYSEL 526 (612)
Q Consensus 497 --~~~~~~~~------~~~~~~~sWe~~~~~~~~~y~~ 526 (612)
..+...+. +......+|+.....|.++|++
T Consensus 544 f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~ 581 (633)
T PF05693_consen 544 FCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDL 581 (633)
T ss_dssp HHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22221111 3334568999999999999985
No 97
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.07 E-value=1.3e-08 Score=116.74 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=121.5
Q ss_pred CCCCcEEEEEeccCCccCHHHHHHHHHHhhc---c-CCCeEEEEEecCCCH--------HHHHHHHH--HcCCceEEecC
Q 007215 360 QAFSKGAYFLGKMVWAKGYRELIDLLAKHKN---D-LDGFKLDVFGNGEDA--------YEVQSAAK--RLDLNLNFQKG 425 (612)
Q Consensus 360 ~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~---~-~~~~~LvIvG~g~~~--------~~l~~~~~--~l~l~v~f~g~ 425 (612)
.++.++|.|+.|+..+|+.+.+++.+.++.+ . ..++.++++|++... +.+.++++ +...+|.|+..
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~ 554 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLED 554 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcC
Confidence 4556689999999999999999998877743 1 135899999987632 23444455 23334888777
Q ss_pred CCCHH--HHHhccceEEeccC--CCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEecCC--------------HHH
Q 007215 426 RDHAD--DSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKT--------------SED 487 (612)
Q Consensus 426 ~~~~~--~ll~~aDv~V~PS~--~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~~d--------------~~~ 487 (612)
++..- .+++.||++++||+ .|++|++-+-||.-|.+-+++-.|--.+..++.||+.+++ +++
T Consensus 555 Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~g~nGwaig~~~~~~~~~~~d~~da~~ 634 (778)
T cd04299 555 YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYDGENGWAIGDGDEYEDDEYQDAEEAEA 634 (778)
T ss_pred CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccCCCCceEeCCCccccChhhcchhhHHH
Confidence 77554 89999999999999 8999999999999999999999887555458899998832 455
Q ss_pred HHHHHHHHHh----CC-----CCCCCHHH----Hh---cCCHHHHHHHHHHHHh
Q 007215 488 FVARVKEALA----ND-----PQPLTPEQ----RY---NLSWEAATQRFIEYSE 525 (612)
Q Consensus 488 la~aI~~ll~----~~-----~~~~~~~~----~~---~~sWe~~~~~~~~~y~ 525 (612)
|-+.|++.+- +. |..+..+. +. .|+|++++++|.+.|-
T Consensus 635 Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 635 LYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 5566654321 22 22232222 22 6999999999998665
No 98
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.96 E-value=1.9e-07 Score=99.46 Aligned_cols=248 Identities=14% Similarity=0.027 Sum_probs=139.5
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
....+.+++.+||+||...-+.. . +....++..+ |++..-.+..+ ...++.+.+ ++|.+
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s-~--p~~~aa~~~~~p~~i~e~n~~~----------------g~~nr~~~~-~a~~v 140 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVS-V--PVVIGGWLNRVPVLLHESDMTP----------------GLANKIALR-FASKI 140 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhh-H--HHHHHHHHcCCCEEEECCCCCc----------------cHHHHHHHH-hhCEE
Confidence 44556677899999998543321 1 1234555556 76543333221 112333333 67777
Q ss_pred EEeChhhh-ccCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHH-HHHHHHhhccCCCeE
Q 007215 320 LRLSAATQ-DLPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYREL-IDLLAKHKNDLDGFK 396 (612)
Q Consensus 320 I~~S~~~~-~~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~L-i~A~~~l~~~~~~~~ 396 (612)
++.-+... .++++++.++ +.|..++.... ....++.++.++++++++.+|.-.-.+.+..+ .+++..+.+ +++
T Consensus 141 ~~~f~~~~~~~~~~k~~~tG~Pvr~~~~~~~-~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~---~~~ 216 (352)
T PRK12446 141 FVTFEEAAKHLPKEKVIYTGSPVREEVLKGN-REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL---KYQ 216 (352)
T ss_pred EEEccchhhhCCCCCeEEECCcCCccccccc-chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc---CcE
Confidence 76555443 3555677766 77776665332 23344556666777888777654334555333 334444432 355
Q ss_pred EE-EEecCCCHHHHHHHHHHcCCceEEecCC-CCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC-----C
Q 007215 397 LD-VFGNGEDAYEVQSAAKRLDLNLNFQKGR-DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP-----S 469 (612)
Q Consensus 397 Lv-IvG~g~~~~~l~~~~~~l~l~v~f~g~~-~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g-----g 469 (612)
++ +.|... .+... .++. .+..+++. ++..++++.||++|.- +-++++.|++++|+|.|..... +
T Consensus 217 vv~~~G~~~-~~~~~---~~~~-~~~~~~f~~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~~ 287 (352)
T PRK12446 217 IVHLCGKGN-LDDSL---QNKE-GYRQFEYVHGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFASRG 287 (352)
T ss_pred EEEEeCCch-HHHHH---hhcC-CcEEecchhhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCCCc
Confidence 44 445432 22221 1121 23445666 5677999999988765 4678999999999999998653 1
Q ss_pred c-----cccccCCcEEec----CCHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHHHHHHHH
Q 007215 470 N-----EFFRSFPNCLTY----KTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEY 523 (612)
Q Consensus 470 ~-----~~i~~~~~g~l~----~d~~~la~aI~~ll~~~~~~~~~~~~~~~sWe~~~~~~~~~ 523 (612)
. +.+.....+... -+++.+++++.+++ ++++..+ .....+.....+++..+.
T Consensus 288 ~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll-~~~~~~~-~~~~~~~~~~aa~~i~~~ 348 (352)
T PRK12446 288 DQILNAESFERQGYASVLYEEDVTVNSLIKHVEELS-HNNEKYK-TALKKYNGKEAIQTIIDH 348 (352)
T ss_pred hHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHH-cCHHHHH-HHHHHcCCCCHHHHHHHH
Confidence 1 123333334333 36899999999998 4443332 233334444455554443
No 99
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.94 E-value=5.6e-09 Score=113.46 Aligned_cols=161 Identities=11% Similarity=0.188 Sum_probs=116.1
Q ss_pred CCeEEEeChh-hhc----cC-CCcEEEeC-CCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHh
Q 007215 316 CDKVLRLSAA-TQD----LP-KSVICNVH-GVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKH 388 (612)
Q Consensus 316 ad~vI~~S~~-~~~----~~-~~~i~vin-GVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l 388 (612)
.|.||+.++. .++ ++ ..++.++| |+= ++... .. ..+..+++++. +..|++++++
T Consensus 240 ~~~iIv~T~~q~~di~~r~~~~~~~~~ip~g~i---~~~~~----~~-----r~~~~~l~~t~-------s~~I~~i~~L 300 (438)
T TIGR02919 240 NKKIIIPNKNEYEKIKELLDNEYQEQISQLGYL---YPFKK----DN-----KYRKQALILTN-------SDQIEHLEEI 300 (438)
T ss_pred cCeEEeCCHHHHHHHHHHhCcccCceEEEEEEE---Eeecc----cc-----CCcccEEEECC-------HHHHHHHHHH
Confidence 4899988865 332 43 34445554 442 11110 01 11335666662 8999999999
Q ss_pred hccCCCeEEEEEecCCC-HHHHHHHHHHcCCceEEecCCC-CHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 389 KNDLDGFKLDVFGNGED-AYEVQSAAKRLDLNLNFQKGRD-HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 389 ~~~~~~~~LvIvG~g~~-~~~l~~~~~~l~l~v~f~g~~~-~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.++.|+++|.| |.+.+ ...|+++ .++...+.|.|... +.++++..||+++..|..|+|++++.||++.|+|||+.+
T Consensus 301 v~~lPd~~f~I-ga~te~s~kL~~L-~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd 378 (438)
T TIGR02919 301 VQALPDYHFHI-AALTEMSSKLMSL-DKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFE 378 (438)
T ss_pred HHhCCCcEEEE-EecCcccHHHHHH-HhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEe
Confidence 99999999999 76666 6788888 77732255555455 566999999999999999999999999999999999998
Q ss_pred CC-CccccccCCcEEec--CCHHHHHHHHHHHHhCC
Q 007215 467 HP-SNEFFRSFPNCLTY--KTSEDFVARVKEALAND 499 (612)
Q Consensus 467 ~g-g~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~ 499 (612)
.. +...++.. |.++ +++++|+++|.++|+++
T Consensus 379 ~t~~~~~~i~~--g~l~~~~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 379 ETAHNRDFIAS--ENIFEHNEVDQLISKLKDLLNDP 412 (438)
T ss_pred cccCCcccccC--CceecCCCHHHHHHHHHHHhcCH
Confidence 76 44343333 4454 99999999999999443
No 100
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.94 E-value=1e-09 Score=93.16 Aligned_cols=85 Identities=27% Similarity=0.388 Sum_probs=69.4
Q ss_pred eEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-cccccCCcEEecCCHHHHHHHHHHHHhCCCCCCC------HHHHhc
Q 007215 438 VFINPSISDVLCTATAEALAMGKFVICADHPSN-EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLT------PEQRYN 510 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~------~~~~~~ 510 (612)
++++|+..+++++.++|+||||+|||+++.++. +.+.++..++.+.|++++.++|..+++++..+.+ +...+.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999874 4555677888889999999999999954433222 455667
Q ss_pred CCHHHHHHHHHH
Q 007215 511 LSWEAATQRFIE 522 (612)
Q Consensus 511 ~sWe~~~~~~~~ 522 (612)
++|+..++++++
T Consensus 81 ~t~~~~~~~il~ 92 (92)
T PF13524_consen 81 HTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHC
Confidence 999999988764
No 101
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=6.5e-08 Score=102.46 Aligned_cols=254 Identities=17% Similarity=0.148 Sum_probs=149.6
Q ss_pred ChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 239 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 239 ~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
......+.+++.+||+|+....+... +....+...+ |++....+..+.. .+++..+ +|+
T Consensus 79 ~~~~a~~il~~~kPd~vig~Ggyvs~---P~~~Aa~~~~iPv~ihEqn~~~G~----------------ank~~~~-~a~ 138 (357)
T COG0707 79 GVLQARKILKKLKPDVVIGTGGYVSG---PVGIAAKLLGIPVIIHEQNAVPGL----------------ANKILSK-FAK 138 (357)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcccc---HHHHHHHhCCCCEEEEecCCCcch----------------hHHHhHH-hhc
Confidence 34556667778999999995544332 1234556666 7776555443222 2333333 455
Q ss_pred eEEEeChhhhc-cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHH-HHHHhhccCCC
Q 007215 318 KVLRLSAATQD-LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELID-LLAKHKNDLDG 394 (612)
Q Consensus 318 ~vI~~S~~~~~-~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~-A~~~l~~~~~~ 394 (612)
.|.+.-+.... ..++++.++ +.|..+++. ......+.. +. .++++|+.+|.-.-.+.+..++. +...+.+ +
T Consensus 139 ~V~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~-~~~~~~~~~-~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~ 212 (357)
T COG0707 139 KVASAFPKLEAGVKPENVVVTGIPVRPEFEE-LPAAEVRKD-GR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN---R 212 (357)
T ss_pred eeeeccccccccCCCCceEEecCcccHHhhc-cchhhhhhh-cc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh---C
Confidence 55544444333 344566666 778777765 222222221 11 15677777765433333443333 3333332 4
Q ss_pred eEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC-Cc---
Q 007215 395 FKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP-SN--- 470 (612)
Q Consensus 395 ~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g-g~--- 470 (612)
+.++...+..+.+.++....+++. +++.++.++..++|+.||++|.= +-++|+.|.+++|+|+|--+.+ +.
T Consensus 213 ~~v~~~~G~~~~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLvIsR----aGa~Ti~E~~a~g~P~IliP~p~~~~~~ 287 (357)
T COG0707 213 IQVIHQTGKNDLEELKSAYNELGV-VRVLPFIDDMAALLAAADLVISR----AGALTIAELLALGVPAILVPYPPGADGH 287 (357)
T ss_pred eEEEEEcCcchHHHHHHHHhhcCc-EEEeeHHhhHHHHHHhccEEEeC----CcccHHHHHHHhCCCEEEeCCCCCccch
Confidence 555444433335667776677776 88899999999999999999765 3679999999999999998766 31
Q ss_pred -----cccccCCcEEec----CCHHHHHHHHHHHHhCCCCCCCHHHH--hcCCHHHHHHHHHHHH
Q 007215 471 -----EFFRSFPNCLTY----KTSEDFVARVKEALANDPQPLTPEQR--YNLSWEAATQRFIEYS 524 (612)
Q Consensus 471 -----~~i~~~~~g~l~----~d~~~la~aI~~ll~~~~~~~~~~~~--~~~sWe~~~~~~~~~y 524 (612)
..+.+...|.++ -+++.+++.|.+++ +++++...|.. +...-...+++..+..
T Consensus 288 Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~-~~~~~l~~m~~~a~~~~~p~aa~~i~~~~ 351 (357)
T COG0707 288 QEYNAKFLEKAGAALVIRQSELTPEKLAELILRLL-SNPEKLKAMAENAKKLGKPDAAERIADLL 351 (357)
T ss_pred HHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 134444455555 25789999999999 44555554433 2222233444444443
No 102
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.81 E-value=2.6e-09 Score=100.47 Aligned_cols=165 Identities=22% Similarity=0.259 Sum_probs=82.4
Q ss_pred EEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCCCCce
Q 007215 145 IVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFKADFK 222 (612)
Q Consensus 145 ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~~~~~ 222 (612)
+++..+.|..|| +++.+..++ +|+++ ||+|+|+ +.. ..+...... ....
T Consensus 2 li~~~~~~~~GG-~e~~~~~l~~~l~~~--------------G~~v~v~~~~~--~~~~~~~~~------------~~~~ 52 (177)
T PF13439_consen 2 LITNIFLPNIGG-AERVVLNLARALAKR--------------GHEVTVVSPGV--KDPIEEELV------------KIFV 52 (177)
T ss_dssp EEECC-TTSSSH-HHHHHHHHHHHHHHT--------------T-EEEEEESS---TTS-SSTEE------------EE--
T ss_pred EEEEecCCCCCh-HHHHHHHHHHHHHHC--------------CCEEEEEEcCC--Cccchhhcc------------ceee
Confidence 455666677666 899998888 99999 8888883 331 111111000 0000
Q ss_pred ecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHH
Q 007215 223 ISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQA 301 (612)
Q Consensus 223 i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~ 301 (612)
...+.. .............+.+.+.+.+||+||++.+....+.. .... + |.+.++|+.+..............
T Consensus 53 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~---~~~~--~~~~v~~~H~~~~~~~~~~~~~~~~~ 126 (177)
T PF13439_consen 53 KIPYPI-RKRFLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIAL---LACR--KVPIVYTIHGPYFERRFLKSKLSPYS 126 (177)
T ss_dssp -TT-SS-TSS--HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHH---HHHH--CSCEEEEE-HHH--HHTTTTSCCCHH
T ss_pred eeeccc-ccccchhHHHHHHHHHHHHHcCCCeEEecccchhHHHH---Hhcc--CCCEEEEeCCCcccccccccccchhh
Confidence 000000 00111222233456667777899999998866443333 1112 5 999999998742111111111222
Q ss_pred HHHHHHHHHHHHhcCCeEEEeChhhhc------cCCCcEEEe-CCCCCCCC
Q 007215 302 FFVKHINNWVTRAYCDKVLRLSAATQD------LPKSVICNV-HGVNPKFL 345 (612)
Q Consensus 302 ~~~~~i~~~~~~~~ad~vI~~S~~~~~------~~~~~i~vi-nGVd~~~f 345 (612)
.+...+.+...+ .+|.+|++|+.+++ ++++++.+| ||||++.|
T Consensus 127 ~~~~~~~~~~~~-~~~~ii~vS~~~~~~l~~~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 127 YLNFRIERKLYK-KADRIIAVSESTKDELIKFGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HHHHCTTHHHHC-CSSEEEESSHHHHHHHHHHT--SS-EEE----B-CCCH
T ss_pred hhhhhhhhhHHh-cCCEEEEECHHHHHHHHHhCCcccCCEEEECCccHHHc
Confidence 333333333322 58999999998766 456888888 89999876
No 103
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.79 E-value=3.9e-07 Score=93.87 Aligned_cols=188 Identities=13% Similarity=0.114 Sum_probs=114.4
Q ss_pred hHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCCCEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEE
Q 007215 242 DTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLR 321 (612)
Q Consensus 242 ~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~ 321 (612)
.+...+.+.+||+|++........+. ...+...+.+..+.+.... . ..||.++.
T Consensus 71 ~~~~~l~~~~~d~vV~D~y~~~~~~~---~~~k~~~~~l~~iDD~~~~-~----------------------~~~D~vin 124 (279)
T TIGR03590 71 ELINLLEEEKFDILIVDHYGLDADWE---KLIKEFGRKILVIDDLADR-P----------------------HDCDLLLD 124 (279)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCHHHH---HHHHHhCCeEEEEecCCCC-C----------------------cCCCEEEe
Confidence 46677777899999996654332222 1222223444444443211 0 04788887
Q ss_pred eChhhhc--cC---CCcEEEeCCCC-----CCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhcc
Q 007215 322 LSAATQD--LP---KSVICNVHGVN-----PKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND 391 (612)
Q Consensus 322 ~S~~~~~--~~---~~~i~vinGVd-----~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~ 391 (612)
.+..... +. +......-|.+ ++|....... ..+ .+.+.+++++|..++.+....+++++.++...
T Consensus 125 ~~~~~~~~~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~~-~~~----~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~ 199 (279)
T TIGR03590 125 QNLGADASDYQGLVPANCRLLLGPSYALLREEFYQLATAN-KRR----KPLRRVLVSFGGADPDNLTLKLLSALAESQIN 199 (279)
T ss_pred CCCCcCHhHhcccCcCCCeEEecchHHhhhHHHHHhhHhh-hcc----cccCeEEEEeCCcCCcCHHHHHHHHHhccccC
Confidence 7664222 21 12223334554 2221111100 000 11235788999888877677888888765321
Q ss_pred CCCeEEEEEecC-CCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 392 LDGFKLDVFGNG-EDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 392 ~~~~~LvIvG~g-~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
.++ .+++|.+ +..+++++.++... ++++++..++..++++.||++|.+ .|.++.|++++|+|+|+....
T Consensus 200 -~~i-~vv~G~~~~~~~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 200 -ISI-TLVTGSSNPNLDELKKFAKEYP-NIILFIDVENMAELMNEADLAIGA-----AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred -ceE-EEEECCCCcCHHHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEEEec
Confidence 223 3467765 44577887776644 588899999998999999999985 568999999999999988654
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=2.3e-06 Score=90.15 Aligned_cols=250 Identities=15% Similarity=0.048 Sum_probs=149.8
Q ss_pred hHhhhccCCCccEEEECCCc-hhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 242 DTSQFIPSKDADIAILEEPE-HLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 242 ~l~~~l~~~~pDVVh~~~p~-~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
.+.+++...+||++++.+-+ ..+... -.++.+ |.+.+---...+..+++ .++ +.+.+.+.. ..|.|
T Consensus 114 ~v~rFl~~~~P~l~Ii~EtElWPnli~----e~~~~~~p~~LvNaRLS~rS~~~y------~k~-~~~~~~~~~-~i~li 181 (419)
T COG1519 114 AVRRFLRKWRPKLLIIMETELWPNLIN----ELKRRGIPLVLVNARLSDRSFARY------AKL-KFLARLLFK-NIDLI 181 (419)
T ss_pred HHHHHHHhcCCCEEEEEeccccHHHHH----HHHHcCCCEEEEeeeechhhhHHH------HHH-HHHHHHHHH-hccee
Confidence 46677778899999884433 333332 333445 66654332222222111 111 222222222 35899
Q ss_pred EEeChhhhc----cCCCcEEEe-C-CCCCCC--CCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhcc
Q 007215 320 LRLSAATQD----LPKSVICNV-H-GVNPKF--LQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND 391 (612)
Q Consensus 320 I~~S~~~~~----~~~~~i~vi-n-GVd~~~--f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~ 391 (612)
++-|+...+ +.-+.+.+. | =.|.+. -........+...+.+ ++++++.+. ...--+.++++++.++++
T Consensus 182 ~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~~l~~~ 257 (419)
T COG1519 182 LAQSEEDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQALKKQ 257 (419)
T ss_pred eecCHHHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHHHHHHhh
Confidence 999996544 333445555 4 122111 0111122233333222 678888876 334445588999999999
Q ss_pred CCCeEEEEEecCCCH-HHHHHHHHHcCCceE-E-ec--CCC-----------CHHHHHhccceEE-eccCCCcchHHHHH
Q 007215 392 LDGFKLDVFGNGEDA-YEVQSAAKRLDLNLN-F-QK--GRD-----------HADDSLHGYKVFI-NPSISDVLCTATAE 454 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~-~~l~~~~~~l~l~v~-f-~g--~~~-----------~~~~ll~~aDv~V-~PS~~E~fgl~llE 454 (612)
.|+..+++|-..+++ +.+.+++++.|+.+. + -+ ... +...+|..+|+.+ =-|..+--|-.++|
T Consensus 258 ~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LE 337 (419)
T COG1519 258 FPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLE 337 (419)
T ss_pred CCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhh
Confidence 999999999998887 788889999988733 2 11 011 1127788888554 45776767788999
Q ss_pred HHHcCCcEEeeCCCC-c----cccccCCcEEecCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 007215 455 ALAMGKFVICADHPS-N----EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQR 508 (612)
Q Consensus 455 AMA~G~PVVas~~gg-~----~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~~~~~ 508 (612)
+.++|+|||.-..-- . +.+.....|+.++|.+.++.++..++ ++++.++.+.+
T Consensus 338 pa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~-~~~~~r~~~~~ 395 (419)
T COG1519 338 PAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLL-ADEDKREAYGR 395 (419)
T ss_pred HHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhc-CCHHHHHHHHH
Confidence 999999999887653 2 34455566778888777777777777 44544444443
No 105
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.51 E-value=3.1e-06 Score=92.12 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=119.7
Q ss_pred CCCCCCCCCCc-------cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC----eEEEEEecCC--C
Q 007215 339 GVNPKFLQIGE-------KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGNGE--D 405 (612)
Q Consensus 339 GVd~~~f~~~~-------~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~----~~LvIvG~g~--~ 405 (612)
|||++.|.... ....++++ +++++|+-+.|++.-||+..=++||+++.+++|+ +.|+-+.... +
T Consensus 227 gID~~~~~~~a~~~~~~~~~~lr~~~---~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~ 303 (474)
T PRK10117 227 GIEPDEIAKQAAGPLPPKLAQLKAEL---KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGD 303 (474)
T ss_pred eEcHHHHHHHhhchHHHHHHHHHHHc---CCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCc
Confidence 99977663221 11122222 3467899999999999999999999999988874 5566554321 1
Q ss_pred -------HHHHHHHHHHcCCc--------eEEec-CCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCC-----cE
Q 007215 406 -------AYEVQSAAKRLDLN--------LNFQK-GRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK-----FV 462 (612)
Q Consensus 406 -------~~~l~~~~~~l~l~--------v~f~g-~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~-----PV 462 (612)
..++++++.+-+.. |.++. .++..+ .+|+.|||++.+|..+|+-++..|+.||-. .+
T Consensus 304 v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvL 383 (474)
T PRK10117 304 VQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVL 383 (474)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccE
Confidence 13344444332211 56543 445444 889999999999999999999999999975 37
Q ss_pred EeeCCCC-ccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-H-----HHHhcCCHHHHHHHHHHHHh
Q 007215 463 ICADHPS-NEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-P-----EQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 463 Vas~~gg-~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-~-----~~~~~~sWe~~~~~~~~~y~ 525 (612)
|.|...| .+++ . ..+++ .|.+++|++|.++|..+.+.++ + ......+-..-++.|++...
T Consensus 384 ILSefAGaA~~L-~--~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~ 452 (474)
T PRK10117 384 VLSQFAGAANEL-T--SALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLK 452 (474)
T ss_pred EEecccchHHHh-C--CCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Confidence 7787666 4444 3 35666 8999999999999976654333 1 11222343344666666554
No 106
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.50 E-value=2.6e-06 Score=93.62 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=120.7
Q ss_pred CCccEEEECCCchhHHhhhhHHHhhhCC--CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhh
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQ 327 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~~~~--pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~ 327 (612)
..-|+|.+|+...+.... ...++.. ++..+.|+.++...-... -+....++ +.. ..||.|=.-+....
T Consensus 140 ~~~D~VWVhDYhL~llP~---~LR~~~~~~~IgfFlHiPFPs~e~fr~-lP~r~eiL---~gl---L~aDlIgFqt~~~~ 209 (474)
T PF00982_consen 140 RPGDLVWVHDYHLMLLPQ---MLRERGPDARIGFFLHIPFPSSEIFRC-LPWREEIL---RGL---LGADLIGFQTFEYA 209 (474)
T ss_dssp -TT-EEEEESGGGTTHHH---HHHHTT--SEEEEEE-S----HHHHTT-STTHHHHH---HHH---TTSSEEEESSHHHH
T ss_pred cCCCEEEEeCCcHHHHHH---HHHhhcCCceEeeEEecCCCCHHHHhh-CCcHHHHH---HHh---hcCCEEEEecHHHH
Confidence 367999998866543333 3333333 778889998876532111 11112211 111 12455554444322
Q ss_pred c----------------------cCCCc--EEEeC-CCCCCCCCCC--------ccchhhhhhccCCC-CcEEEEEeccC
Q 007215 328 D----------------------LPKSV--ICNVH-GVNPKFLQIG--------EKVATDREQGQQAF-SKGAYFLGKMV 373 (612)
Q Consensus 328 ~----------------------~~~~~--i~vin-GVd~~~f~~~--------~~~~~~~~~~~~~~-~~~il~vGrl~ 373 (612)
+ +.... +.+.| |||++.+... .....+.++ .. .++|+-+.|++
T Consensus 210 ~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~---~~~~~ii~gvDrld 286 (474)
T PF00982_consen 210 RNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKF---KGKRKIIVGVDRLD 286 (474)
T ss_dssp HHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHT---TT-SEEEEEE--B-
T ss_pred HHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhc---CCCcEEEEEeccch
Confidence 1 11112 22234 9997765321 112233333 33 47899999999
Q ss_pred CccCHHHHHHHHHHhhccCCC----eEEEEEecC--CCH-------HHHHHHHH----HcCC----ceEEecC-CCCHH-
Q 007215 374 WAKGYRELIDLLAKHKNDLDG----FKLDVFGNG--EDA-------YEVQSAAK----RLDL----NLNFQKG-RDHAD- 430 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~~~~~----~~LvIvG~g--~~~-------~~l~~~~~----~l~l----~v~f~g~-~~~~~- 430 (612)
..||+..=++|++++.+++|+ +.|+-++.. .+. .++.+++. ++|- .|.++.. ++..+
T Consensus 287 ~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~ 366 (474)
T PF00982_consen 287 YTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEEL 366 (474)
T ss_dssp GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHH
T ss_pred hhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHH
Confidence 999999999999999888764 566655531 111 33333333 2332 1666544 54444
Q ss_pred -HHHhccceEEeccCCCcchHHHHHHHHcCCc----EEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCC
Q 007215 431 -DSLHGYKVFINPSISDVLCTATAEALAMGKF----VICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQ 501 (612)
Q Consensus 431 -~ll~~aDv~V~PS~~E~fgl~llEAMA~G~P----VVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~ 501 (612)
.+++.||+++.+|..+|+.++..|+.+|... +|.|...|....... .++++ .|.+++|++|.++|+.+++
T Consensus 367 ~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~-~al~VNP~d~~~~A~ai~~AL~M~~~ 443 (474)
T PF00982_consen 367 LALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE-AALLVNPWDIEEVADAIHEALTMPPE 443 (474)
T ss_dssp HHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT-S-EEE-TT-HHHHHHHHHHHHT--HH
T ss_pred HHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCC-ccEEECCCChHHHHHHHHHHHcCCHH
Confidence 8999999999999999999999999999876 677776664333331 23555 8999999999999966543
No 107
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.49 E-value=9e-06 Score=85.03 Aligned_cols=217 Identities=16% Similarity=0.128 Sum_probs=119.0
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHh---cC
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRA---YC 316 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~a 316 (612)
..+.+.+.+.+||+|++...... ...++..+ |++.+.|..+...... ...........++++.... .+
T Consensus 84 ~~~~~~l~~~~pDlVIsD~~~~~------~~aa~~~giP~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T PF13528_consen 84 RREIRWLREFRPDLVISDFYPLA------ALAARRAGIPVIVISNQYWFLHPNF--WLPWDQDFGRLIERYIDRYHFPPA 155 (318)
T ss_pred HHHHHHHHhcCCCEEEEcChHHH------HHHHHhcCCCEEEEEehHHcccccC--CcchhhhHHHHHHHhhhhccCCcc
Confidence 34556667889999999643322 13445667 9998888765432110 1111122233344443332 13
Q ss_pred CeEEEeChhhhccCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCe
Q 007215 317 DKVLRLSAATQDLPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGF 395 (612)
Q Consensus 317 d~vI~~S~~~~~~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~ 395 (612)
+..+..+-.........+..+ +-+..+..... ..+.+.+++++|..... .++++++.+ ++.
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----------~~~~~~iLv~~gg~~~~----~~~~~l~~~----~~~ 217 (318)
T PF13528_consen 156 DRRLALSFYPPLPPFFRVPFVGPIIRPEIRELP----------PEDEPKILVYFGGGGPG----DLIEALKAL----PDY 217 (318)
T ss_pred cceecCCccccccccccccccCchhcccccccC----------CCCCCEEEEEeCCCcHH----HHHHHHHhC----CCC
Confidence 344444433111111112222 11111111000 01234577899987665 667777665 567
Q ss_pred EEEEEecCCCHHHHHHHHHHcCCceEEecCC-CCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-cc--
Q 007215 396 KLDVFGNGEDAYEVQSAAKRLDLNLNFQKGR-DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-NE-- 471 (612)
Q Consensus 396 ~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~-~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~~-- 471 (612)
.++++|..... ....++++.+.. .+..++++.||++|.-+ --.++.||+++|+|+|+-+..+ .|
T Consensus 218 ~~~v~g~~~~~--------~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~----G~~t~~Ea~~~g~P~l~ip~~~~~EQ~ 285 (318)
T PF13528_consen 218 QFIVFGPNAAD--------PRPGNIHVRPFSTPDFAELMAAADLVISKG----GYTTISEALALGKPALVIPRPGQDEQE 285 (318)
T ss_pred eEEEEcCCccc--------ccCCCEEEeecChHHHHHHHHhCCEEEECC----CHHHHHHHHHcCCCEEEEeCCCCchHH
Confidence 88888765311 113348887766 66669999999998763 2346999999999999998754 22
Q ss_pred ----ccccCCcEEec----CCHHHHHHHHHHH
Q 007215 472 ----FFRSFPNCLTY----KTSEDFVARVKEA 495 (612)
Q Consensus 472 ----~i~~~~~g~l~----~d~~~la~aI~~l 495 (612)
.+.....|... -+++.|+++|+++
T Consensus 286 ~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 286 YNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 12222233333 3678888877653
No 108
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.46 E-value=7.5e-06 Score=87.65 Aligned_cols=233 Identities=11% Similarity=0.039 Sum_probs=128.9
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCe
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~ 318 (612)
+..+.+.+.+.+||+|+++.-...... +...+.+.+ |++.+.-+.. .+. . .. -+.+.+....||.
T Consensus 82 ~~~~~~~~~~~~Pd~vlv~GD~~~~la--~alaA~~~~IPv~HveaG~r-s~~------~-~e----E~~r~~i~~la~l 147 (365)
T TIGR03568 82 IIGFSDAFERLKPDLVVVLGDRFEMLA--AAIAAALLNIPIAHIHGGEV-TEG------A-ID----ESIRHAITKLSHL 147 (365)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHhCCcEEEEECCcc-CCC------C-ch----HHHHHHHHHHHhh
Confidence 345677777899999999653322222 235566667 7764433321 110 0 01 1122222225667
Q ss_pred EEEeChhhhc------cCCCcEEEe--CCCCCCCC-CCCccchhhhhhccCCCCcEE-EEEeccC--Cc---cCHHHHHH
Q 007215 319 VLRLSAATQD------LPKSVICNV--HGVNPKFL-QIGEKVATDREQGQQAFSKGA-YFLGKMV--WA---KGYRELID 383 (612)
Q Consensus 319 vI~~S~~~~~------~~~~~i~vi--nGVd~~~f-~~~~~~~~~~~~~~~~~~~~i-l~vGrl~--~~---Kg~~~Li~ 383 (612)
.++.++..++ .+++++.++ +++|.-.. ..........+++++..++.+ +.+-+-. .. +.+..+++
T Consensus 148 ~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~ 227 (365)
T TIGR03568 148 HFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLK 227 (365)
T ss_pred ccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHH
Confidence 7777775444 234667776 47773211 111223445566665433444 3333321 22 34556666
Q ss_pred HHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcC--C-ceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHc
Q 007215 384 LLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLD--L-NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAM 458 (612)
Q Consensus 384 A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~--l-~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~ 458 (612)
++..+. .++.++.-..++..+.+.+.+.++. . .+.+++.....+ .+++.|+++|--|. | .+.||.++
T Consensus 228 ~L~~~~---~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS----g-gi~EA~~l 299 (365)
T TIGR03568 228 ALDELN---KNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSS----S-GIIEAPSF 299 (365)
T ss_pred HHHHhc---cCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcCh----h-HHHhhhhc
Confidence 665542 2342322122233333333333321 2 389999888777 99999999985441 2 33899999
Q ss_pred CCcEEeeCCCCcccc-ccCCcEEec-CCHHHHHHHHHHHH
Q 007215 459 GKFVICADHPSNEFF-RSFPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 459 G~PVVas~~gg~~~i-~~~~~g~l~-~d~~~la~aI~~ll 496 (612)
|+|||+- +...+. ..+.|.+.+ .|++++.+++.+++
T Consensus 300 g~Pvv~l--~~R~e~~~~g~nvl~vg~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 300 GVPTINI--GTRQKGRLRADSVIDVDPDKEEIVKAIEKLL 337 (365)
T ss_pred CCCEEee--cCCchhhhhcCeEEEeCCCHHHHHHHHHHHh
Confidence 9999954 454443 346777777 79999999999965
No 109
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.43 E-value=2e-05 Score=85.23 Aligned_cols=120 Identities=17% Similarity=0.039 Sum_probs=77.5
Q ss_pred CcEEEEEeccCC---ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceE
Q 007215 363 SKGAYFLGKMVW---AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVF 439 (612)
Q Consensus 363 ~~~il~vGrl~~---~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~ 439 (612)
..+++..|.... .+-...+++++..+ +...++.+|...... ....-++.+.++++ ..+++..||++
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~----~~~~i~~~g~~~~~~------~~~~~~v~~~~~~p-~~~ll~~~d~~ 308 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVATL----GQRAILSLGWGGLGA------EDLPDNVRVVDFVP-HDWLLPRCAAV 308 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHHc----CCeEEEEccCccccc------cCCCCceEEeCCCC-HHHHhhhhhee
Confidence 345567788743 34455666666554 222345566544322 12223488888875 45699999999
Q ss_pred EeccCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccccCCcEEec--C--CHHHHHHHHHHHHh
Q 007215 440 INPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRSFPNCLTY--K--TSEDFVARVKEALA 497 (612)
Q Consensus 440 V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~~~~~g~l~--~--d~~~la~aI~~ll~ 497 (612)
|.- +...++.||+++|+|+|.....+. ..+.....|... . +++++++++.++++
T Consensus 309 I~h----gG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 309 VHH----GGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLD 371 (401)
T ss_pred eec----CCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhC
Confidence 843 445799999999999999977652 233333345444 2 78999999999994
No 110
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.43 E-value=1.2e-05 Score=87.10 Aligned_cols=179 Identities=19% Similarity=0.123 Sum_probs=113.3
Q ss_pred HHHhcCCeEEEeChhhhc-cCC--CcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEE-ecc--CCccCHHHHHH
Q 007215 311 VTRAYCDKVLRLSAATQD-LPK--SVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFL-GKM--VWAKGYRELID 383 (612)
Q Consensus 311 ~~~~~ad~vI~~S~~~~~-~~~--~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~v-Grl--~~~Kg~~~Li~ 383 (612)
+....||.|.+..+...+ +.+ .++.++ |.+-........ . ++.++.++++.+ |.- ...+++..+++
T Consensus 156 l~~~~a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~-~------~l~~~~~~lllLpGSR~ae~~~~lp~~l~ 228 (396)
T TIGR03492 156 MRSRRCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPPER-K------PLLTGRFRIALLPGSRPPEAYRNLKLLLR 228 (396)
T ss_pred hhchhhCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCccccc-c------ccCCCCCEEEEECCCCHHHHHccHHHHHH
Confidence 333378888888876555 433 355556 544322221111 1 333444555444 432 23468889999
Q ss_pred HHHHhhccCCCeEEEEEe-cCCCHHHHHHHHHHcCCc----------------eEEecCCCCHHHHHhccceEEeccCCC
Q 007215 384 LLAKHKNDLDGFKLDVFG-NGEDAYEVQSAAKRLDLN----------------LNFQKGRDHADDSLHGYKVFINPSISD 446 (612)
Q Consensus 384 A~~~l~~~~~~~~LvIvG-~g~~~~~l~~~~~~l~l~----------------v~f~g~~~~~~~ll~~aDv~V~PS~~E 446 (612)
++.++.++ +++.+++.- +..+.+.+++..++.+.. +.+.....+..++++.||++|..|
T Consensus 229 al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS--- 304 (396)
T TIGR03492 229 ALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA--- 304 (396)
T ss_pred HHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc---
Confidence 99999766 677776653 455567777766655543 455566666779999999999985
Q ss_pred cchHHHHHHHHcCCcEEeeCCCCc----ccccc-----CCcEEec-CCHHHHHHHHHHHHhCCCCCC
Q 007215 447 VLCTATAEALAMGKFVICADHPSN----EFFRS-----FPNCLTY-KTSEDFVARVKEALANDPQPL 503 (612)
Q Consensus 447 ~fgl~llEAMA~G~PVVas~~gg~----~~i~~-----~~~g~l~-~d~~~la~aI~~ll~~~~~~~ 503 (612)
|.+..|++++|+|+|....++. ..... +....+. .+++.+++++.++++ +++.+
T Consensus 305 --Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~-d~~~~ 368 (396)
T TIGR03492 305 --GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLA-DPELL 368 (396)
T ss_pred --CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHc-CHHHH
Confidence 5666999999999999985432 11121 2223333 778999999999994 44433
No 111
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.38 E-value=6.3e-07 Score=82.57 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=50.6
Q ss_pred ChHhHhhhc--cCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhc
Q 007215 239 PAGDTSQFI--PSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAY 315 (612)
Q Consensus 239 ~~~~l~~~l--~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 315 (612)
....+.+.+ .+.+||+||++.+. ..+.. ....+..+ |+|.++|+...... ..+...+.+.++++..+ .
T Consensus 59 ~~~~~~~~l~~~~~~~Dvv~~~~~~-~~~~~--~~~~~~~~~p~v~~~h~~~~~~~-----~~~~~~~~~~~~~~~~~-~ 129 (160)
T PF13579_consen 59 FLRRLRRLLAARRERPDVVHAHSPT-AGLVA--ALARRRRGIPLVVTVHGTLFRRG-----SRWKRRLYRWLERRLLR-R 129 (160)
T ss_dssp HHHHHHHHCHHCT---SEEEEEHHH-HHHHH--HHHHHHHT--EEEE-SS-T-----------HHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHhhhccCCeEEEecccc-hhHHH--HHHHHccCCcEEEEECCCchhhc-----cchhhHHHHHHHHHHHh-c
Confidence 345677777 78999999998854 33333 22332556 99999998653322 22334455666776666 6
Q ss_pred CCeEEEeChhhhc------cCCCcEEEe-CC
Q 007215 316 CDKVLRLSAATQD------LPKSVICNV-HG 339 (612)
Q Consensus 316 ad~vI~~S~~~~~------~~~~~i~vi-nG 339 (612)
||.++++|+.+++ .+.+++.++ ||
T Consensus 130 ad~vi~~S~~~~~~l~~~g~~~~ri~vipnG 160 (160)
T PF13579_consen 130 ADRVIVVSEAMRRYLRRYGVPPDRIHVIPNG 160 (160)
T ss_dssp -SEEEESSHHHHHHHHHH---GGGEEE----
T ss_pred CCEEEECCHHHHHHHHHhCCCCCcEEEeCcC
Confidence 9999999998766 455788887 55
No 112
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=6.6e-05 Score=81.67 Aligned_cols=160 Identities=11% Similarity=0.153 Sum_probs=109.7
Q ss_pred C-CCCCCCCCCCc--------cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC----eEEEEEecCC
Q 007215 338 H-GVNPKFLQIGE--------KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGNGE 404 (612)
Q Consensus 338 n-GVd~~~f~~~~--------~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~----~~LvIvG~g~ 404 (612)
| |||+..|.... ..+.+..+ ...+++|+-+.|++.-||+..=+.|++++.+++|. +.++-++...
T Consensus 250 PIgID~~~~~~~~~~~~v~~~~~el~~~~--~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pS 327 (486)
T COG0380 250 PIGIDPEEFERALKSPSVQEKVLELKAEL--GRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPS 327 (486)
T ss_pred eeecCHHHHHHhhcCCchhhHHHHHHHHh--cCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCC
Confidence 5 99987664321 11122222 23378899999999999999999999999988763 5565555433
Q ss_pred CH---------HHHHHHHH----HcCC----ceEEecC-CCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCC----
Q 007215 405 DA---------YEVQSAAK----RLDL----NLNFQKG-RDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK---- 460 (612)
Q Consensus 405 ~~---------~~l~~~~~----~l~l----~v~f~g~-~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~---- 460 (612)
.. .+++.++. ++|- .|.|+-. .+..+ .+++.||+++.+|..||+.++..|+.||--
T Consensus 328 r~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G 407 (486)
T COG0380 328 REDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPG 407 (486)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCC
Confidence 21 22223332 2231 1666554 44444 888889999999999999999999999843
Q ss_pred cEEeeCCCC-ccccccCCcEEec--CCHHHHHHHHHHHHhCCCCC
Q 007215 461 FVICADHPS-NEFFRSFPNCLTY--KTSEDFVARVKEALANDPQP 502 (612)
Q Consensus 461 PVVas~~gg-~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~ 502 (612)
+.|-|...| ..++.+ .+++ .|.+++|++|.++|+.+++.
T Consensus 408 ~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai~~AL~m~~eE 449 (486)
T COG0380 408 VLILSEFAGAASELRD---ALIVNPWDTKEVADAIKRALTMSLEE 449 (486)
T ss_pred cEEEeccccchhhhcc---CEeECCCChHHHHHHHHHHhcCCHHH
Confidence 677777655 444443 4555 89999999999999765543
No 113
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.22 E-value=2.2e-05 Score=75.18 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=99.1
Q ss_pred CceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHhhhCCC
Q 007215 140 KRNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFK 218 (612)
Q Consensus 140 ~~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~~v~~~ 218 (612)
++||+|+.+--.|...||-++....++ +|+++ |++|+|+.... ..+.....|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~--------------g~~v~Vyc~~~-~~~~~~~~y------------ 53 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSK--------------GIDVTVYCRSD-YYPYKEFEY------------ 53 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcC--------------CceEEEEEccC-CCCCCCccc------------
Confidence 378999999999999998888888888 89988 99999953310 111111122
Q ss_pred CCceecccCCCccccccccc-ChHhHhhhc---c--CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHH
Q 007215 219 ADFKISFYPGKFSKERRSII-PAGDTSQFI---P--SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYI 291 (612)
Q Consensus 219 ~~~~i~~~~~~y~~~~~si~-~~~~l~~~l---~--~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~ 291 (612)
.+.++...+........++. ....+...+ . +.+.||+++.....-.++.+-.+..++.+ +++..+|.. ++.
T Consensus 54 ~gv~l~~i~~~~~g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGl--EWk 131 (185)
T PF09314_consen 54 NGVRLVYIPAPKNGSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGL--EWK 131 (185)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcc--hhh
Confidence 22222222221111122222 122222332 2 23688998844331111110012223334 777777765 444
Q ss_pred HHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----cCCCcEEEe-CCCC
Q 007215 292 KREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD-----LPKSVICNV-HGVN 341 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~~~~~i~vi-nGVd 341 (612)
+ .+.+.+..++++.-|+++.+ +||.+|+.|+.+++ +...+.++| .|.|
T Consensus 132 R-~KW~~~~k~~lk~~E~~avk-~ad~lIaDs~~I~~y~~~~y~~~~s~~IaYGad 185 (185)
T PF09314_consen 132 R-AKWGRPAKKYLKFSEKLAVK-YADRLIADSKGIQDYIKERYGRKKSTFIAYGAD 185 (185)
T ss_pred h-hhcCHHHHHHHHHHHHHHHH-hCCEEEEcCHHHHHHHHHHcCCCCcEEecCCCC
Confidence 3 35566677777888888777 99999999999887 443445555 5765
No 114
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.1e-05 Score=81.79 Aligned_cols=179 Identities=14% Similarity=0.028 Sum_probs=119.6
Q ss_pred CCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH---HHHHHHHHHcCCc-
Q 007215 344 FLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA---YEVQSAAKRLDLN- 419 (612)
Q Consensus 344 ~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~---~~l~~~~~~l~l~- 419 (612)
.+.+......+...|++++ .++|.+--...|-...+++.+.++.+..|+-.|++.|+|++. ..++.++++.|+.
T Consensus 411 ~~~~v~p~~sR~~lglp~~--avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~ 488 (620)
T COG3914 411 GFEPVTPPPSRAQLGLPED--AVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDS 488 (620)
T ss_pred CcccCCCCcchhhcCCCCC--eEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCCh
Confidence 3444444456778888887 444444446778888889999888888899999999998775 6788899999987
Q ss_pred --eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc------ccccc-CCcEEecCCHHHH
Q 007215 420 --LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN------EFFRS-FPNCLTYKTSEDF 488 (612)
Q Consensus 420 --v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~------~~i~~-~~~g~l~~d~~~l 488 (612)
++|.+..++++ +-+..||+++=+-- -+-.++.+||+.||+|||+--.-.. .++.+ |-.-+++.+.++.
T Consensus 489 eRL~f~p~~~~~~h~a~~~iADlvLDTyP-Y~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dY 567 (620)
T COG3914 489 ERLRFLPPAPNEDHRARYGIADLVLDTYP-YGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADY 567 (620)
T ss_pred hheeecCCCCCHHHHHhhchhheeeeccc-CCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHH
Confidence 88999999887 88888999986643 3556799999999999996532111 12222 2233344666666
Q ss_pred HHHHHHHHhCCCCCCC---HHHH-----hcCCHHHHHHHHHHHHh
Q 007215 489 VARVKEALANDPQPLT---PEQR-----YNLSWEAATQRFIEYSE 525 (612)
Q Consensus 489 a~aI~~ll~~~~~~~~---~~~~-----~~~sWe~~~~~~~~~y~ 525 (612)
.+.-..+-.+...+.+ ...+ --|+-++.++++.+.|.
T Consensus 568 V~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~ 612 (620)
T COG3914 568 VEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYW 612 (620)
T ss_pred HHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHH
Confidence 6555544423211111 1111 12455667777777776
No 115
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.11 E-value=4.6e-05 Score=81.15 Aligned_cols=234 Identities=15% Similarity=0.094 Sum_probs=137.0
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-C--EEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-H--VVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-p--vv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
..+.+.+...+||++++-+...+++-- .+..++.+ + ++..+--....+- .+-.+.+.+ ++|
T Consensus 72 ~~~~~~~~~~~pd~vIlID~pgFNlrl--ak~lk~~~~~~~viyYI~PqvWAWr---------~~R~~~i~~-----~~D 135 (373)
T PF02684_consen 72 RKLVERIKEEKPDVVILIDYPGFNLRL--AKKLKKRGIPIKVIYYISPQVWAWR---------PGRAKKIKK-----YVD 135 (373)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccHHH--HHHHHHhCCCceEEEEECCceeeeC---------ccHHHHHHH-----HHh
Confidence 346666678999999995544444433 23444444 4 5554433221211 111222333 468
Q ss_pred eEEEeChhhhccC-C--CcEEEe-CC-CCCCCCCCC-ccchhhhhhccCCCCcEEE-EEec-cC-CccCHHHHHHHHHHh
Q 007215 318 KVLRLSAATQDLP-K--SVICNV-HG-VNPKFLQIG-EKVATDREQGQQAFSKGAY-FLGK-MV-WAKGYRELIDLLAKH 388 (612)
Q Consensus 318 ~vI~~S~~~~~~~-~--~~i~vi-nG-Vd~~~f~~~-~~~~~~~~~~~~~~~~~il-~vGr-l~-~~Kg~~~Li~A~~~l 388 (612)
.++++=+.-.++- + -.+..+ |. +| ...+. .....++.+ +++++++|. .-|. -. -.+.+..++++++++
T Consensus 136 ~ll~ifPFE~~~y~~~g~~~~~VGHPl~d--~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l 212 (373)
T PF02684_consen 136 HLLVIFPFEPEFYKKHGVPVTYVGHPLLD--EVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLL 212 (373)
T ss_pred heeECCcccHHHHhccCCCeEEECCcchh--hhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888887555522 2 234444 43 23 11221 223333444 666667664 4453 22 236678899999999
Q ss_pred hccCCCeEEEEEecCCCHHH-HHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC-
Q 007215 389 KNDLDGFKLDVFGNGEDAYE-VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD- 466 (612)
Q Consensus 389 ~~~~~~~~LvIvG~g~~~~~-l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~- 466 (612)
.++.|++++++.......++ +.+.....+..+...-...+..+.++.||+.+..| |++.+|++.+|+|.|+.-
T Consensus 213 ~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk 287 (373)
T PF02684_consen 213 KKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYK 287 (373)
T ss_pred HHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEc
Confidence 99999999998875544433 55555555554444333345558999999998886 999999999999998873
Q ss_pred CCCcc----------------ccccCCcEE--ec---CCHHHHHHHHHHHHhC
Q 007215 467 HPSNE----------------FFRSFPNCL--TY---KTSEDFVARVKEALAN 498 (612)
Q Consensus 467 ~gg~~----------------~i~~~~~g~--l~---~d~~~la~aI~~ll~~ 498 (612)
..... -+.-+..-+ +. -+++.+++++..++.+
T Consensus 288 ~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~ 340 (373)
T PF02684_consen 288 VSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN 340 (373)
T ss_pred CcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC
Confidence 33221 011111100 11 5789999999999844
No 116
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.08 E-value=9e-05 Score=87.05 Aligned_cols=137 Identities=11% Similarity=0.032 Sum_probs=98.5
Q ss_pred CCcEEEEEeccCCccCHHHHHHHHHHhhccCCCe----EEEEEecC-----CCH----HHHHHHHHH----cCC----ce
Q 007215 362 FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGF----KLDVFGNG-----EDA----YEVQSAAKR----LDL----NL 420 (612)
Q Consensus 362 ~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~----~LvIvG~g-----~~~----~~l~~~~~~----l~l----~v 420 (612)
.+++|+-+.|++.-||+..=+.||+++.+++|+. .|+-+... ++. .++.+++.+ +|- .|
T Consensus 338 ~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv 417 (854)
T PLN02205 338 DRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPI 417 (854)
T ss_pred CCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceE
Confidence 4678999999999999999999999999888754 55545431 222 223333332 332 16
Q ss_pred EEe-cCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCC-------------------cEEeeCCCC-ccccccCC
Q 007215 421 NFQ-KGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK-------------------FVICADHPS-NEFFRSFP 477 (612)
Q Consensus 421 ~f~-g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~-------------------PVVas~~gg-~~~i~~~~ 477 (612)
.|+ ..++..+ .+|+.||+++.++..+|+-++..|+.+|.. .+|.|...| ..++ .
T Consensus 418 ~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L-~-- 494 (854)
T PLN02205 418 VLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL-S-- 494 (854)
T ss_pred EEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh-C--
Confidence 665 4455455 889999999999999999999999999864 255555444 3333 2
Q ss_pred cEEec--CCHHHHHHHHHHHHhCCCC
Q 007215 478 NCLTY--KTSEDFVARVKEALANDPQ 501 (612)
Q Consensus 478 ~g~l~--~d~~~la~aI~~ll~~~~~ 501 (612)
..+++ .|.+++|++|.++|..+++
T Consensus 495 ~Ai~VNP~d~~~~a~ai~~AL~m~~~ 520 (854)
T PLN02205 495 GAIRVNPWNIDAVADAMDSALEMAEP 520 (854)
T ss_pred cCeEECCCCHHHHHHHHHHHHcCCHH
Confidence 35566 8999999999999976554
No 117
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.03 E-value=0.00033 Score=73.63 Aligned_cols=218 Identities=14% Similarity=0.045 Sum_probs=127.9
Q ss_pred cChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcC
Q 007215 238 IPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYC 316 (612)
Q Consensus 238 ~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a 316 (612)
.....+.+.+.+.+||++++...... .+.+...+ |.|.+..+...... +++..- +|
T Consensus 70 ~R~~~l~~~~~~~~pDv~is~~s~~a------~~va~~lgiP~I~f~D~e~a~~~----------------~~Lt~P-la 126 (335)
T PF04007_consen 70 ERQYKLLKLIKKFKPDVAISFGSPEA------ARVAFGLGIPSIVFNDTEHAIAQ----------------NRLTLP-LA 126 (335)
T ss_pred HHHHHHHHHHHhhCCCEEEecCcHHH------HHHHHHhCCCeEEEecCchhhcc----------------ceeehh-cC
Confidence 34456777777899999998543222 12344456 99988887543221 111111 57
Q ss_pred CeEEEeChhh----hccCCC-cEEEeCCCCCC----CCCCCccchhhhhhccCCCCcEEEEEeccCCc-----cCH-HHH
Q 007215 317 DKVLRLSAAT----QDLPKS-VICNVHGVNPK----FLQIGEKVATDREQGQQAFSKGAYFLGKMVWA-----KGY-REL 381 (612)
Q Consensus 317 d~vI~~S~~~----~~~~~~-~i~vinGVd~~----~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~-----Kg~-~~L 381 (612)
|.+++++-.- +++..+ ++.-.||++.- .|.|. ....+++|..+. +.|+. |..+. +|- ..+
T Consensus 127 ~~i~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd--~~vl~~lg~~~~-~yIvv--R~~~~~A~y~~~~~~i~ 201 (335)
T PF04007_consen 127 DVIITPEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPD--PEVLKELGLDDE-PYIVV--RPEAWKASYDNGKKSIL 201 (335)
T ss_pred CeeECCcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCC--hhHHHHcCCCCC-CEEEE--EeccccCeeecCccchH
Confidence 8888877532 334433 45556888742 24443 344566776544 44432 33221 121 223
Q ss_pred HHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCc
Q 007215 382 IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKF 461 (612)
Q Consensus 382 i~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~P 461 (612)
-+.++.+.+.. +. ++++...++..+ +.++++ +.+....-+..+++..||++|-- .|+...||...|+|
T Consensus 202 ~~ii~~L~~~~-~~-vV~ipr~~~~~~---~~~~~~--~~i~~~~vd~~~Ll~~a~l~Ig~-----ggTMa~EAA~LGtP 269 (335)
T PF04007_consen 202 PEIIEELEKYG-RN-VVIIPRYEDQRE---LFEKYG--VIIPPEPVDGLDLLYYADLVIGG-----GGTMAREAALLGTP 269 (335)
T ss_pred HHHHHHHHhhC-ce-EEEecCCcchhh---HHhccC--ccccCCCCCHHHHHHhcCEEEeC-----CcHHHHHHHHhCCC
Confidence 34555555442 33 666655444332 334444 55555555666899999999754 47889999999999
Q ss_pred EEeeCCCC---c-cccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 462 VICADHPS---N-EFFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 462 VVas~~gg---~-~~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
.|.+-.|- . ..+.+ .|++. .|++++.+.+.+.+.
T Consensus 270 aIs~~~g~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 270 AISCFPGKLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLG 309 (335)
T ss_pred EEEecCCcchhHHHHHHH--CCCeEecCCHHHHHHHHHHhhh
Confidence 99985542 2 23333 46666 899999997777663
No 118
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.00 E-value=6.1e-05 Score=80.01 Aligned_cols=239 Identities=12% Similarity=0.078 Sum_probs=126.8
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+...+.+.+||+|++..--.-.... ...+.+.+ | |..++.-...+. ...+. ..-..|......||..
T Consensus 57 ~~~~~~~~~~~Pd~Vlv~GD~~~~la~--alaA~~~~ip-v~HieaGlRs~d--~~~g~-----~de~~R~~i~~la~lh 126 (346)
T PF02350_consen 57 IELADVLEREKPDAVLVLGDRNEALAA--ALAAFYLNIP-VAHIEAGLRSGD--RTEGM-----PDEINRHAIDKLAHLH 126 (346)
T ss_dssp HHHHHHHHHHT-SEEEEETTSHHHHHH--HHHHHHTT-E-EEEES-----S---TTSST-----THHHHHHHHHHH-SEE
T ss_pred HHHHHHHHhcCCCEEEEEcCCchHHHH--HHHHHHhCCC-EEEecCCCCccc--cCCCC-----chhhhhhhhhhhhhhh
Confidence 446666778899999995433222222 34555666 6 334443211111 01011 1122333333368999
Q ss_pred EEeChhhhc------cCCCcEEEe--CCCCCCCCCCC-ccchh-hhhhccCCCCcEEEEEe-ccCC---ccCHHHHHHHH
Q 007215 320 LRLSAATQD------LPKSVICNV--HGVNPKFLQIG-EKVAT-DREQGQQAFSKGAYFLG-KMVW---AKGYRELIDLL 385 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi--nGVd~~~f~~~-~~~~~-~~~~~~~~~~~~il~vG-rl~~---~Kg~~~Li~A~ 385 (612)
++.++..++ .+++++.++ +++|.-..... ..... .........++.++... +... ......+.+++
T Consensus 127 f~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l 206 (346)
T PF02350_consen 127 FAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEAL 206 (346)
T ss_dssp EESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHH
Confidence 999996544 456788888 47763211100 00011 01110013344554443 2221 34567777888
Q ss_pred HHhhccCCCeEEEEEecCCCH--HHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCCCcchHHHH-HHHHcCC
Q 007215 386 AKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATA-EALAMGK 460 (612)
Q Consensus 386 ~~l~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~ll-EAMA~G~ 460 (612)
+.+.+. +++.+++.....+. ..+.+..+++. ++.++......+ .+++.|+++|-=| | .+. ||.++|+
T Consensus 207 ~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~ 278 (346)
T PF02350_consen 207 KALAER-QNVPVIFPLHNNPRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSLGK 278 (346)
T ss_dssp HHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGGT-
T ss_pred HHHHhc-CCCcEEEEecCCchHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHhCC
Confidence 887776 68888888864343 55666666663 688888888777 8999999987654 4 566 9999999
Q ss_pred cEEeeCCCC-cccc-ccCCcEEec-CCHHHHHHHHHHHHhC
Q 007215 461 FVICADHPS-NEFF-RSFPNCLTY-KTSEDFVARVKEALAN 498 (612)
Q Consensus 461 PVVas~~gg-~~~i-~~~~~g~l~-~d~~~la~aI~~ll~~ 498 (612)
|+|.-+..+ ..+- ..+.+-+ + .|++++.++|.+++.+
T Consensus 279 P~v~iR~~geRqe~r~~~~nvl-v~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 279 PVVNIRDSGERQEGRERGSNVL-VGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp -EEECSSS-S-HHHHHTTSEEE-ETSSHHHHHHHHHHHHH-
T ss_pred eEEEecCCCCCHHHHhhcceEE-eCCCHHHHHHHHHHHHhC
Confidence 999995554 4444 4456666 6 9999999999999954
No 119
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.98 E-value=0.0018 Score=68.07 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=68.9
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCC-CHHHHHhccceEEecc
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRD-HADDSLHGYKVFINPS 443 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~-~~~~ll~~aDv~V~PS 443 (612)
+++|.|. .+...+++++.++ +++.+++ |..+... +.+..++.+.+... +..+++..||++|.-+
T Consensus 191 iLv~~g~----~~~~~l~~~l~~~----~~~~~i~-~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~ 255 (321)
T TIGR00661 191 ILVYIGF----EYRYKILELLGKI----ANVKFVC-YSYEVAK------NSYNENVEIRRITTDNFKELIKNAELVITHG 255 (321)
T ss_pred EEEECCc----CCHHHHHHHHHhC----CCeEEEE-eCCCCCc------cccCCCEEEEECChHHHHHHHHhCCEEEECC
Confidence 4556543 3556777777655 4554443 4322111 12233577777765 5559999999999875
Q ss_pred CCCcchHHHHHHHHcCCcEEeeCCCCc-c------ccccCCcEEec--CCHHHHHHHHHHHHhCC
Q 007215 444 ISDVLCTATAEALAMGKFVICADHPSN-E------FFRSFPNCLTY--KTSEDFVARVKEALAND 499 (612)
Q Consensus 444 ~~E~fgl~llEAMA~G~PVVas~~gg~-~------~i~~~~~g~l~--~d~~~la~aI~~ll~~~ 499 (612)
-..++.||+++|+|+|..+..+. + .+.....|... .+. ++.+++.+.+.++
T Consensus 256 ----G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 256 ----GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNMK 315 (321)
T ss_pred ----ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhccccc
Confidence 23479999999999999987652 3 23333445444 444 5555555555343
No 120
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.87 E-value=8.9e-05 Score=80.60 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=101.3
Q ss_pred chhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC-HHHHHHHHHHcCCc---eEEecCC
Q 007215 351 VATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLN---LNFQKGR 426 (612)
Q Consensus 351 ~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~-~~~l~~~~~~l~l~---v~f~g~~ 426 (612)
...|..+|++++. ++|.+--...|=-+..++++.++.++.|+.+|++...... .+.+++.+.+.|+. +.|.+..
T Consensus 273 ~~~R~~~gLp~d~--vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~ 350 (468)
T PF13844_consen 273 VTTRAQYGLPEDA--VVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVA 350 (468)
T ss_dssp EEETGGGT--SSS--EEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE--
T ss_pred ccCHHHcCCCCCc--eEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCC
Confidence 4567889998875 4444434567888999999999999999999988765443 36788888899986 8888866
Q ss_pred CCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc------ccccc-CCcEEecCCHHHHHHHHHHHHh
Q 007215 427 DHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN------EFFRS-FPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 427 ~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~------~~i~~-~~~g~l~~d~~~la~aI~~ll~ 497 (612)
+..+ ..++.+|+++=+.. -+-+++.+||+.+|+|||+-..... ..+.. |-.-++..|.+++.+.-.++.+
T Consensus 351 ~~~ehl~~~~~~DI~LDT~p-~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~ 429 (468)
T PF13844_consen 351 PREEHLRRYQLADICLDTFP-YNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLAT 429 (468)
T ss_dssp -HHHHHHHGGG-SEEE--SS-S--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhCCEEeeCCC-CCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhC
Confidence 6554 56677899998743 3557899999999999998864331 12222 2223455899999998888885
Q ss_pred CCCCCCC---H---HH--HhcCCHHHHHHHHHHHHh
Q 007215 498 NDPQPLT---P---EQ--RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 498 ~~~~~~~---~---~~--~~~~sWe~~~~~~~~~y~ 525 (612)
+...+.+ + .. ..-++=...++.+.+.|+
T Consensus 430 D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 430 DPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp -HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 4332211 0 01 112444555666666665
No 121
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.85 E-value=6.9e-05 Score=78.40 Aligned_cols=240 Identities=17% Similarity=0.151 Sum_probs=137.5
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCCCEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVL 320 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI 320 (612)
.++.+.+...+||++++-+...++.-. .+..++.+|.+-++|-..+.-- .|-.....+ ...++|.++
T Consensus 75 ~~~~~~i~~~kpD~~i~IDsPdFnl~v--ak~lrk~~p~i~iihYV~PsVW---------AWr~~Ra~~--i~~~~D~lL 141 (381)
T COG0763 75 RELVRYILANKPDVLILIDSPDFNLRV--AKKLRKAGPKIKIIHYVSPSVW---------AWRPKRAVK--IAKYVDHLL 141 (381)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCchHH--HHHHHHhCCCCCeEEEECccee---------eechhhHHH--HHHHhhHee
Confidence 456666778999999984433333332 2344444455555554333211 111111111 122579999
Q ss_pred EeChhhhcc-CC--CcEEEe-CCC-CCCCCCCCccchhhhhhccCCCCcEE-EEEecc--CCccCHHHHHHHHHHhhccC
Q 007215 321 RLSAATQDL-PK--SVICNV-HGV-NPKFLQIGEKVATDREQGQQAFSKGA-YFLGKM--VWAKGYRELIDLLAKHKNDL 392 (612)
Q Consensus 321 ~~S~~~~~~-~~--~~i~vi-nGV-d~~~f~~~~~~~~~~~~~~~~~~~~i-l~vGrl--~~~Kg~~~Li~A~~~l~~~~ 392 (612)
++=+.-.++ .+ -..+.+ |.. |.-.+.+ ++...+++++++.+++++ +..|.= +-.+....+.+|+++++++.
T Consensus 142 ailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~-~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~ 220 (381)
T COG0763 142 AILPFEPAFYDKFGLPCTYVGHPLADEIPLLP-DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARY 220 (381)
T ss_pred eecCCCHHHHHhcCCCeEEeCChhhhhccccc-cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhC
Confidence 988854442 22 114444 533 3222333 344478888888777666 455642 12367788889999999999
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCC-ceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEee-CCCCc
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDL-NLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA-DHPSN 470 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l-~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas-~~gg~ 470 (612)
|++++++--.....+.++....+... ....+-.-....+.+..||+.+..| |++.+|+|.+|+|.|++ .....
T Consensus 221 ~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk~~~i 295 (381)
T COG0763 221 PDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYKVKPI 295 (381)
T ss_pred CCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEeccHH
Confidence 99999998766654444444332221 1111111122337899999988776 89999999999999988 44332
Q ss_pred cc-ccc---------CCcE----Eec-------CCHHHHHHHHHHHHhCC
Q 007215 471 EF-FRS---------FPNC----LTY-------KTSEDFVARVKEALAND 499 (612)
Q Consensus 471 ~~-i~~---------~~~g----~l~-------~d~~~la~aI~~ll~~~ 499 (612)
.. +.. -.|- .++ -.++.+++++..++.+.
T Consensus 296 t~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 296 TYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNG 345 (381)
T ss_pred HHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcCh
Confidence 11 000 0010 011 45788888988888554
No 122
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.62 E-value=0.0007 Score=61.49 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=48.2
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC--CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~--pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
+..+.+.+.+.+|||||++.+...+..+ ..+++..+ |++.+.|+... +. . .....+.+.+.++..+ .+|
T Consensus 63 ~~~l~k~ik~~~~DvIh~h~~~~~~~~~--~l~~~~~~~~~~i~~~hg~~~-~~-~----~~~~~~~~~~~~~~~k-~~~ 133 (139)
T PF13477_consen 63 YFRLRKIIKKEKPDVIHCHTPSPYGLFA--MLAKKLLKNKKVIYTVHGSDF-YN-S----SKKKKLKKFIIKFAFK-RAD 133 (139)
T ss_pred HHHHHHHhccCCCCEEEEecCChHHHHH--HHHHHHcCCCCEEEEecCCee-ec-C----CchHHHHHHHHHHHHH-hCC
Confidence 3467788889999999999987654443 33334444 89999997532 11 0 0012244566666666 789
Q ss_pred eEEEeC
Q 007215 318 KVLRLS 323 (612)
Q Consensus 318 ~vI~~S 323 (612)
.+++.|
T Consensus 134 ~ii~~~ 139 (139)
T PF13477_consen 134 KIIVQS 139 (139)
T ss_pred EEEEcC
Confidence 998875
No 123
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.56 E-value=0.0011 Score=73.89 Aligned_cols=199 Identities=10% Similarity=0.016 Sum_probs=115.2
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC---CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN---HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~---pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
.++.+.+.+++||++++-+...+++.- .+..++.+ |++..+--....+. .+-.+.+.+ ++|
T Consensus 300 ~~l~~~i~~~kPD~vIlID~PgFNlrL--AK~lkk~Gi~ipviyYVsPqVWAWR---------~~Rikki~k-----~vD 363 (608)
T PRK01021 300 RKLYKTILKTNPRTVICIDFPDFHFLL--IKKLRKRGYKGKIVHYVCPSIWAWR---------PKRKTILEK-----YLD 363 (608)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCHHH--HHHHHhcCCCCCEEEEECccceeeC---------cchHHHHHH-----Hhh
Confidence 345666668899999995544455433 23444444 66655543322221 111122323 468
Q ss_pred eEEEeChhhhcc-CC--CcEEEe-C-CCCCCCCCCCccchhhhhhccCCCCcEE-EEEec-c-CCccCHHHHHHHHH--H
Q 007215 318 KVLRLSAATQDL-PK--SVICNV-H-GVNPKFLQIGEKVATDREQGQQAFSKGA-YFLGK-M-VWAKGYRELIDLLA--K 387 (612)
Q Consensus 318 ~vI~~S~~~~~~-~~--~~i~vi-n-GVd~~~f~~~~~~~~~~~~~~~~~~~~i-l~vGr-l-~~~Kg~~~Li~A~~--~ 387 (612)
.++++=+.-.++ .+ -.++.+ | =+|.-.. ..+..+.+++++++++++++ +.-|. - +=.+....+++|++ +
T Consensus 364 ~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~-~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~ 442 (608)
T PRK01021 364 LLLLILPFEQNLFKDSPLRTVYLGHPLVETISS-FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASS 442 (608)
T ss_pred hheecCccCHHHHHhcCCCeEEECCcHHhhccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888755552 22 234444 4 3332111 12334456777776666655 55564 2 22367788888887 5
Q ss_pred hhccCCCeEEEEEecCCC-HHHHHHHHHHcC-CceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 388 HKNDLDGFKLDVFGNGED-AYEVQSAAKRLD-LNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 388 l~~~~~~~~LvIvG~g~~-~~~l~~~~~~l~-l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
+.+ +.++++....+. .+.+++..++.+ +.+++.... +..+++++||+.+..| |++.+|++.+|+|.|+.
T Consensus 443 l~~---~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 443 LAS---THQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECDCALAKC-----GTIVLETALNQTPTIVT 513 (608)
T ss_pred hcc---CeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEE
Confidence 543 577766543222 355666665544 244554321 2358999999999987 99999999999999886
No 124
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.45 E-value=0.0075 Score=63.59 Aligned_cols=239 Identities=12% Similarity=0.056 Sum_probs=141.8
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+...+.+.+||+|.++.-..-.+.+ ..++.+.+ |+.-+--+.- .+. ..+-.-+++.+....+|.-
T Consensus 82 ~~~~~vl~~~kPD~VlVhGDT~t~lA~--alaa~~~~IpV~HvEAGlR-t~~---------~~~PEE~NR~l~~~~S~~h 149 (383)
T COG0381 82 EGLSKVLEEEKPDLVLVHGDTNTTLAG--ALAAFYLKIPVGHVEAGLR-TGD---------LYFPEEINRRLTSHLSDLH 149 (383)
T ss_pred HHHHHHHHhhCCCEEEEeCCcchHHHH--HHHHHHhCCceEEEecccc-cCC---------CCCcHHHHHHHHHHhhhhh
Confidence 345666678999999996654444332 35555555 6654332221 000 0011233444444467888
Q ss_pred EEeChhhhc------cCCCcEEEe-C-CCCCCCCC---CCccchhhhh-hccCCCCcEE-EEEeccCC-ccCHHHHHHHH
Q 007215 320 LRLSAATQD------LPKSVICNV-H-GVNPKFLQ---IGEKVATDRE-QGQQAFSKGA-YFLGKMVW-AKGYRELIDLL 385 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi-n-GVd~~~f~---~~~~~~~~~~-~~~~~~~~~i-l~vGrl~~-~Kg~~~Li~A~ 385 (612)
++.++..++ .++++|.++ | -+|.-... .......... +.. .+++.+ +..=|-.. .+++..+++++
T Consensus 150 fapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~~~~~~i~~al 228 (383)
T COG0381 150 FAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDD-KDKKYILVTAHRRENVGEPLEEICEAL 228 (383)
T ss_pred cCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhcc-ccCcEEEEEcchhhcccccHHHHHHHH
Confidence 999986544 556778888 4 33311100 1111111111 222 233344 34434322 28999999999
Q ss_pred HHhhccCCCeEEEEEecCCCHHHHHHHH-HHcCCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCC
Q 007215 386 AKHKNDLDGFKLDVFGNGEDAYEVQSAA-KRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK 460 (612)
Q Consensus 386 ~~l~~~~~~~~LvIvG~g~~~~~l~~~~-~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~ 460 (612)
.++.++++++.++. -..+. ..+++.. +.++.. +.++.++.-.+ .++..|-+.+-=| |...=||-..|+
T Consensus 229 ~~i~~~~~~~~viy-p~H~~-~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg~ 301 (383)
T COG0381 229 REIAEEYPDVIVIY-PVHPR-PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLGK 301 (383)
T ss_pred HHHHHhCCCceEEE-eCCCC-hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcCC
Confidence 99998887775444 33333 4444444 455544 88888888777 6666664443322 446789999999
Q ss_pred cEEeeCCCC-ccccccCCcEEec-CCHHHHHHHHHHHHhCC
Q 007215 461 FVICADHPS-NEFFRSFPNCLTY-KTSEDFVARVKEALAND 499 (612)
Q Consensus 461 PVVas~~gg-~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~ 499 (612)
||++-+.+. .++.++..+-.++ .+.+.+.+++.++++++
T Consensus 302 Pvl~lR~~TERPE~v~agt~~lvg~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 302 PVLVLRDTTERPEGVEAGTNILVGTDEENILDAATELLEDE 342 (383)
T ss_pred cEEeeccCCCCccceecCceEEeCccHHHHHHHHHHHhhCh
Confidence 999998774 6676665555666 78899999999999543
No 125
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=0.0091 Score=60.00 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=62.2
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCC-CHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEec
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGE-DAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 442 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~-~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~P 442 (612)
.+++.+|.-++ ||+ .++.++.+.+..-++.+ ++|++. ....+++.++++. ++.++-..++..+++..||+.+..
T Consensus 160 ~ilI~lGGsDp-k~l--t~kvl~~L~~~~~nl~i-V~gs~~p~l~~l~k~~~~~~-~i~~~~~~~dma~LMke~d~aI~A 234 (318)
T COG3980 160 DILITLGGSDP-KNL--TLKVLAELEQKNVNLHI-VVGSSNPTLKNLRKRAEKYP-NINLYIDTNDMAELMKEADLAISA 234 (318)
T ss_pred eEEEEccCCCh-hhh--HHHHHHHhhccCeeEEE-EecCCCcchhHHHHHHhhCC-CeeeEecchhHHHHHHhcchheec
Confidence 36677787554 444 45666666554323433 345443 3467777776654 577777888888999999998776
Q ss_pred cCCCcchHHHHHHHHcCCcEEe
Q 007215 443 SISDVLCTATAEALAMGKFVIC 464 (612)
Q Consensus 443 S~~E~fgl~llEAMA~G~PVVa 464 (612)
-|.++.||...|+|.++
T Consensus 235 -----aGstlyEa~~lgvP~l~ 251 (318)
T COG3980 235 -----AGSTLYEALLLGVPSLV 251 (318)
T ss_pred -----cchHHHHHHHhcCCceE
Confidence 47899999999999433
No 126
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.43 E-value=5.9e-05 Score=76.20 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=28.8
Q ss_pred eEEEEeCCCCC-CcCcccccHHHHHH-HhhhcCCccEEEEeccc
Q 007215 142 NVAIVTTASLP-WMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWL 183 (612)
Q Consensus 142 kI~ivt~~~~P-~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l 183 (612)
||++||+++.| ..+||.......+. +|++.| ++|++++|..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT--EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcC-CeEEEEEccc
Confidence 79999999999 67776777777777 899884 6777777765
No 127
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.03 E-value=0.0086 Score=64.65 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=75.4
Q ss_pred cEEEEEeccCCccC--HHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEe
Q 007215 364 KGAYFLGKMVWAKG--YRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~~Kg--~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~ 441 (612)
.+++.+|.+...+. ++.+++++.++ +...++..|.+.+...+. +...++.+.++++.. +++..||++|.
T Consensus 227 ~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~g~~~~~~~~~----~~~~~v~~~~~~p~~-~ll~~~~~~I~ 297 (392)
T TIGR01426 227 VVLISLGTVFNNQPSFYRTCVEAFRDL----DWHVVLSVGRGVDPADLG----ELPPNVEVRQWVPQL-EILKKADAFIT 297 (392)
T ss_pred EEEEecCccCCCCHHHHHHHHHHHhcC----CCeEEEEECCCCChhHhc----cCCCCeEEeCCCCHH-HHHhhCCEEEE
Confidence 34567787643322 22333443322 323355567665543332 233347777887754 79999999987
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeCCCC-c----cccccCCcEEec----CCHHHHHHHHHHHHhC
Q 007215 442 PSISDVLCTATAEALAMGKFVICADHPS-N----EFFRSFPNCLTY----KTSEDFVARVKEALAN 498 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~~gg-~----~~i~~~~~g~l~----~d~~~la~aI~~ll~~ 498 (612)
.+ | ..+++|||++|+|+|+....+ . ..+.....|... -++++++++|.+++.+
T Consensus 298 hg---G-~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~ 359 (392)
T TIGR01426 298 HG---G-MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSD 359 (392)
T ss_pred CC---C-chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcC
Confidence 54 2 347899999999999987654 2 123333445444 3679999999999944
No 128
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.77 E-value=0.18 Score=50.36 Aligned_cols=147 Identities=19% Similarity=0.112 Sum_probs=84.8
Q ss_pred CeEEEeChhhhc-cC--CCcEEEeCCCC----CCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCH--H---HHHHH
Q 007215 317 DKVLRLSAATQD-LP--KSVICNVHGVN----PKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGY--R---ELIDL 384 (612)
Q Consensus 317 d~vI~~S~~~~~-~~--~~~i~vinGVd----~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~--~---~Li~A 384 (612)
|.||..-+...+ .. ..++.-++|.- +.+..+. .. ..+.++-.+..++.+++|.-.+.-.+ + .+..+
T Consensus 111 Dlvivp~HD~~~~~s~~~~Nilpi~Gs~h~Vt~~~lAa~-~e-~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~ 188 (329)
T COG3660 111 DLVIVPYHDWREELSDQGPNILPINGSPHNVTSQRLAAL-RE-AFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASL 188 (329)
T ss_pred eEEeccchhhhhhhhccCCceeeccCCCCcccHHHhhhh-HH-HHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHH
Confidence 777777764433 22 23344445653 2222221 11 22223223445678999987665544 2 23333
Q ss_pred HHHhhccCCCeEEEEEecCCCHHHHHHHHHH-cCCc-eEEecCCCCHH----HHHhccceEEeccCCCcchHHHHHHHHc
Q 007215 385 LAKHKNDLDGFKLDVFGNGEDAYEVQSAAKR-LDLN-LNFQKGRDHAD----DSLHGYKVFINPSISDVLCTATAEALAM 458 (612)
Q Consensus 385 ~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~-l~l~-v~f~g~~~~~~----~ll~~aDv~V~PS~~E~fgl~llEAMA~ 458 (612)
+.+..++ ....+++--+....+.+++..+. +.-. +.|....+... ++++.||.+|.+..+-.+ .-||.|.
T Consensus 189 l~k~l~~-~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM---~sEAasT 264 (329)
T COG3660 189 LVKILEN-QGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINM---CSEAAST 264 (329)
T ss_pred HHHHHHh-CCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhh---hHHHhcc
Confidence 3333322 24667777776666777777655 3322 66665553222 899999999998665444 4899999
Q ss_pred CCcEEeeCCCC
Q 007215 459 GKFVICADHPS 469 (612)
Q Consensus 459 G~PVVas~~gg 469 (612)
|+||-+...+.
T Consensus 265 gkPv~~~~~~~ 275 (329)
T COG3660 265 GKPVFILEPPN 275 (329)
T ss_pred CCCeEEEecCC
Confidence 99998875443
No 129
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.091 Score=55.18 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=88.6
Q ss_pred CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccC-CCeEEEEEecCCCHHHHHHHHHHc
Q 007215 338 HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDL-DGFKLDVFGNGEDAYEVQSAAKRL 416 (612)
Q Consensus 338 nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~-~~~~LvIvG~g~~~~~l~~~~~~l 416 (612)
.++|++.|.+-...... .--+.++|...+. -++.+-+.+.+-..+. .+-++.+.|..-....... . .
T Consensus 168 ~a~d~~~~~~i~~da~~--------~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~v~rr~~~~g~~y~~~~~~~-~--~ 235 (373)
T COG4641 168 WAVDDSLFHPIPPDASY--------DVDLNLIGNPYPD-RVEEIKEFFVEPSFKLMVDRRFYVLGPRYPDDIWGR-T--W 235 (373)
T ss_pred ccCCchhcccCCccccc--------eeeeEEecCCCcc-HHHHHHHHhhccchhhhccceeeecCCccchhhhcc-c--c
Confidence 48887777654322211 1257788876554 2222223332211111 2355666776511111111 0 0
Q ss_pred CCceEEecCCCCHH---HHHhccceEEeccCC---Cc---chHHHHHHHHcCCcEEeeCCCCcc-ccccCCcEEecCCHH
Q 007215 417 DLNLNFQKGRDHAD---DSLHGYKVFINPSIS---DV---LCTATAEALAMGKFVICADHPSNE-FFRSFPNCLTYKTSE 486 (612)
Q Consensus 417 ~l~v~f~g~~~~~~---~ll~~aDv~V~PS~~---E~---fgl~llEAMA~G~PVVas~~gg~~-~i~~~~~g~l~~d~~ 486 (612)
.-++.+.|...... ..++..|++++-++. ++ +.+-+.|+|+||.|.+++...+.+ .+.++..-.++.|..
T Consensus 236 ~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~k 315 (373)
T COG4641 236 EPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSK 315 (373)
T ss_pred cchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHH
Confidence 11244555555422 566666788776543 33 377899999999999988777754 555566666669999
Q ss_pred HHHHHHHHHHhCCCCC
Q 007215 487 DFVARVKEALANDPQP 502 (612)
Q Consensus 487 ~la~aI~~ll~~~~~~ 502 (612)
++.+++..++..+.++
T Consensus 316 dl~~~~~yll~h~~er 331 (373)
T COG4641 316 DLKEKLKYLLNHPDER 331 (373)
T ss_pred HHHHHHHHHhcCcchH
Confidence 9999999999555443
No 130
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.55 E-value=0.011 Score=62.84 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHH
Q 007215 376 KGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEA 455 (612)
Q Consensus 376 Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEA 455 (612)
+.+..+++++.++.++. ..+++.|... .+.+++...+.. .+.+.+ +..++++.||+.+..| |++.+|+
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~~-~~~i~~~~~~~~-~~~~~~---~~~~~m~~aDlal~~S-----GT~TLE~ 250 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFFK-GKDLKEIYGDIS-EFEISY---DTHKALLEAEFAFICS-----GTATLEA 250 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCCc-HHHHHHHHhcCC-CcEEec---cHHHHHHhhhHHHhcC-----cHHHHHH
Confidence 56677779998888753 6777777643 355666554332 345553 4558999999998886 8888999
Q ss_pred HHcCCcEEee
Q 007215 456 LAMGKFVICA 465 (612)
Q Consensus 456 MA~G~PVVas 465 (612)
+.+|+|.|..
T Consensus 251 al~g~P~Vv~ 260 (347)
T PRK14089 251 ALIGTPFVLA 260 (347)
T ss_pred HHhCCCEEEE
Confidence 9999999985
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.46 E-value=0.44 Score=48.87 Aligned_cols=217 Identities=16% Similarity=0.056 Sum_probs=123.8
Q ss_pred hHhHhhhccCCCccEEEE-CCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 240 AGDTSQFIPSKDADIAIL-EEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~-~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
...+.+.+.+.+||+.+. ++|... +.+...+ |.+.+..+...... ++++.. +||
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~s~~l~-------rvafgLg~psIi~~D~ehA~~q----------------nkl~~P-la~ 128 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKHSPELP-------RVAFGLGIPSIIFVDNEHAEAQ----------------NKLTLP-LAD 128 (346)
T ss_pred HHHHHHHHhhcCCceEeecCCcchh-------hHHhhcCCceEEecCChhHHHH----------------hhcchh-hhh
Confidence 345777788999999987 444421 3333445 77777666432221 233333 577
Q ss_pred eEEEeChhhh----ccCCC--cEEEeCCCC----CCCCCCCccchhhhhhccCCCCcEEEE------EeccCCccCHHHH
Q 007215 318 KVLRLSAATQ----DLPKS--VICNVHGVN----PKFLQIGEKVATDREQGQQAFSKGAYF------LGKMVWAKGYREL 381 (612)
Q Consensus 318 ~vI~~S~~~~----~~~~~--~i~vinGVd----~~~f~~~~~~~~~~~~~~~~~~~~il~------vGrl~~~Kg~~~L 381 (612)
.+++++.... +...+ ++.-.||+- ...|.|. .+..+++|+..+.+.|++ ..-....++.+.+
T Consensus 129 ~ii~P~~~~~~~~~~~G~~p~~i~~~~giae~~~v~~f~pd--~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~ 206 (346)
T COG1817 129 VIITPEAIDEEELLDFGADPNKISGYNGIAELANVYGFVPD--PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVL 206 (346)
T ss_pred heecccccchHHHHHhCCCccceecccceeEEeecccCCCC--HHHHHHcCCCCCCceEEEeeccccceeeccccchhhH
Confidence 8777776443 23333 344446664 1124443 345567777765444442 1123455777777
Q ss_pred HHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEec-CCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCC
Q 007215 382 IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQK-GRDHADDSLHGYKVFINPSISDVLCTATAEALAMGK 460 (612)
Q Consensus 382 i~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g-~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~ 460 (612)
.++++.+.+.. .+++-. .++.++..+++. +...+ ...|.-+++-.|++++-- -|+..-||...|+
T Consensus 207 ~~li~~l~k~g----iV~ipr---~~~~~eife~~~--n~i~pk~~vD~l~Llyya~lvig~-----ggTMarEaAlLGt 272 (346)
T COG1817 207 PDLIKELKKYG----IVLIPR---EKEQAEIFEGYR--NIIIPKKAVDTLSLLYYATLVIGA-----GGTMAREAALLGT 272 (346)
T ss_pred HHHHHHHHhCc----EEEecC---chhHHHHHhhhc--cccCCcccccHHHHHhhhheeecC-----CchHHHHHHHhCC
Confidence 77777775532 444442 233344444443 22222 223333688888877543 4777899999999
Q ss_pred cEEeeCCCC---cc-ccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 461 FVICADHPS---NE-FFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 461 PVVas~~gg---~~-~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
|.|.+..|- .+ ..+ +.|.++ .|+.+..+...+++.+
T Consensus 273 paIs~~pGkll~vdk~li--e~G~~~~s~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 273 PAISCYPGKLLAVDKYLI--EKGLLYHSTDEIAIVEYAVRNLKY 314 (346)
T ss_pred ceEEecCCccccccHHHH--hcCceeecCCHHHHHHHHHHHhhc
Confidence 999998552 22 222 356666 7777777777777743
No 132
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.12 E-value=0.08 Score=59.27 Aligned_cols=119 Identities=14% Similarity=0.048 Sum_probs=75.7
Q ss_pred cEEEEEeccCC-----ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--cc
Q 007215 364 KGAYFLGKMVW-----AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GY 436 (612)
Q Consensus 364 ~~il~vGrl~~-----~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~a 436 (612)
.+++..|.... .+-...+++|++++ + .++++..+++..+ ....-++.+.++.++. ++++ .+
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l----~-~~viw~~~~~~~~------~~~p~Nv~i~~w~Pq~-~lL~hp~v 365 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKL----P-YNVLWKYDGEVEA------INLPANVLTQKWFPQR-AVLKHKNV 365 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCCcCc------ccCCCceEEecCCCHH-HHhcCCCC
Confidence 45567787643 23456666777665 3 4566655433221 1222347778887654 4784 47
Q ss_pred ceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c----cccccCCcEEec----CCHHHHHHHHHHHHhC
Q 007215 437 KVFINPSISDVLCTATAEALAMGKFVICADHPS-N----EFFRSFPNCLTY----KTSEDFVARVKEALAN 498 (612)
Q Consensus 437 Dv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~----~~i~~~~~g~l~----~d~~~la~aI~~ll~~ 498 (612)
++||.= |-..++.||+.+|+|+|+.+..+ . ..+.....|... -+.+++.++|.+++++
T Consensus 366 ~~fItH----GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~ 432 (507)
T PHA03392 366 KAFVTQ----GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIEN 432 (507)
T ss_pred CEEEec----CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCC
Confidence 888653 44568999999999999997764 1 233333445444 3779999999999944
No 133
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=95.97 E-value=0.00033 Score=66.19 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=61.4
Q ss_pred EEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c--
Q 007215 397 LDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----N-- 470 (612)
Q Consensus 397 LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-- 470 (612)
+++.|..... .........+.++.++++.++..++++.||++|.- +-+.++.|++++|+|.|.-+... .
T Consensus 35 iv~~G~~~~~-~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~ 109 (167)
T PF04101_consen 35 IVQTGKNNYE-ELKIKVENFNPNVKVFGFVDNMAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAADNHQE 109 (167)
T ss_dssp CCCCTTCECH-HHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T-CHH
T ss_pred EEEECCCcHH-HHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcchHHHH
Confidence 4555655333 33322444444589999999999999999988764 34579999999999998876554 1
Q ss_pred ---cccccCCcEEec----CCHHHHHHHHHHHHhCC
Q 007215 471 ---EFFRSFPNCLTY----KTSEDFVARVKEALAND 499 (612)
Q Consensus 471 ---~~i~~~~~g~l~----~d~~~la~aI~~ll~~~ 499 (612)
..+.....+..+ .+++.|.++|.+++.++
T Consensus 110 ~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 110 ENAKELAKKGAAIMLDESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp HHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCH
T ss_pred HHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCc
Confidence 123332223333 34678999999998443
No 134
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.43 E-value=0.58 Score=48.96 Aligned_cols=147 Identities=18% Similarity=0.081 Sum_probs=85.3
Q ss_pred CeEEEeChhhhccCCCcEEEeCCCCCCCCCCCccc----hhhhhhccCCCCcEEEEEeccCCcc--CHH---HHHHHHHH
Q 007215 317 DKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKV----ATDREQGQQAFSKGAYFLGKMVWAK--GYR---ELIDLLAK 387 (612)
Q Consensus 317 d~vI~~S~~~~~~~~~~i~vinGVd~~~f~~~~~~----~~~~~~~~~~~~~~il~vGrl~~~K--g~~---~Li~A~~~ 387 (612)
|.||+..+.--. ...++....|. +....+.... ....++...+...+.+.+|.-.... +.+ .|++.+..
T Consensus 99 Dlvi~p~HD~~~-~~~Nvl~t~ga-~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~ 176 (311)
T PF06258_consen 99 DLVIVPEHDRLP-RGPNVLPTLGA-PNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAA 176 (311)
T ss_pred CEEEECcccCcC-CCCceEecccC-CCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHH
Confidence 899988875221 12233332332 2222222111 1222333334455678899754432 223 66666766
Q ss_pred hhccCCCeEEEEEecCCCHHHHHHHHHHcC--C-ceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcE
Q 007215 388 HKNDLDGFKLDVFGNGEDAYEVQSAAKRLD--L-NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFV 462 (612)
Q Consensus 388 l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~--l-~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PV 462 (612)
+.+..+ ..+.|..+.-..+++.+...++- . .+.++..-.+.. ++|+.||.++.+..+- ..+.||++.|+||
T Consensus 177 ~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSv---SMvsEA~~tG~pV 252 (311)
T PF06258_consen 177 LAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSV---SMVSEAAATGKPV 252 (311)
T ss_pred HHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccH---HHHHHHHHcCCCE
Confidence 666654 78888888766655555443332 1 254554333333 9999999999986542 3489999999999
Q ss_pred EeeCCCC
Q 007215 463 ICADHPS 469 (612)
Q Consensus 463 Vas~~gg 469 (612)
.....++
T Consensus 253 ~v~~l~~ 259 (311)
T PF06258_consen 253 YVLPLPG 259 (311)
T ss_pred EEecCCC
Confidence 9987665
No 135
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=95.09 E-value=0.0099 Score=62.83 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=63.9
Q ss_pred CHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc----cc-cccCC-cEE-ec----CC----HHHHHHHH
Q 007215 428 HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN----EF-FRSFP-NCL-TY----KT----SEDFVARV 492 (612)
Q Consensus 428 ~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~----~~-i~~~~-~g~-l~----~d----~~~la~aI 492 (612)
|-+++.+.|.+-|+||++|++|.+..|.--||+|-|+|+..|. ++ |.+.. -|+ ++ .. .++|++-|
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m 572 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFM 572 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHH
Confidence 4458999999999999999999999999999999999998763 33 33322 232 33 33 45555555
Q ss_pred HHHHhCCCCCCC--------HHHHhcCCHHHHHHHHHHHHh
Q 007215 493 KEALANDPQPLT--------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 493 ~~ll~~~~~~~~--------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
.+..+.. +++ +....-++|..+...|.++-.
T Consensus 573 ~~F~~qs--RRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~ 611 (692)
T KOG3742|consen 573 YEFCKQS--RRQRIIQRNRTERLSDLLDWKYLGRYYRKARH 611 (692)
T ss_pred HHHHHHH--HHHHHHHhcchhhHHHHHhHHHHhHHHHHHHH
Confidence 5554221 122 222233688888777776554
No 136
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=94.93 E-value=5.5 Score=41.31 Aligned_cols=153 Identities=15% Similarity=0.028 Sum_probs=90.4
Q ss_pred cEEEEEec-cCCccCHHHHHHHHHHhhccCCCeEEEEE-ec--CCC--HHHHHHHHHHcCC--ceEEecC-CCCHH--HH
Q 007215 364 KGAYFLGK-MVWAKGYRELIDLLAKHKNDLDGFKLDVF-GN--GED--AYEVQSAAKRLDL--NLNFQKG-RDHAD--DS 432 (612)
Q Consensus 364 ~~il~vGr-l~~~Kg~~~Li~A~~~l~~~~~~~~LvIv-G~--g~~--~~~l~~~~~~l~l--~v~f~g~-~~~~~--~l 432 (612)
++.+-+|+ -++..+...+++++++... .++++++- |- |.. .+++.+.++++-. ++..+.. .+-.+ ++
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~~l~~~~~--~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~l 223 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALRALHQQFG--DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLAL 223 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHhC--CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHH
Confidence 45566776 5677888888888877654 46777664 33 222 2555555555544 2555443 33333 89
Q ss_pred HhccceEEeccC-CCcchHHHHHHHHcCCcEEeeCC-CCcccccc-CCcEEec---CCHHHHHHHHHHHHhCCCCCCCHH
Q 007215 433 LHGYKVFINPSI-SDVLCTATAEALAMGKFVICADH-PSNEFFRS-FPNCLTY---KTSEDFVARVKEALANDPQPLTPE 506 (612)
Q Consensus 433 l~~aDv~V~PS~-~E~fgl~llEAMA~G~PVVas~~-gg~~~i~~-~~~g~l~---~d~~~la~aI~~ll~~~~~~~~~~ 506 (612)
++.||+.++--. .+++|+ ++=.+..|+||+.+.. +.-..+.. +-.-+.. -|...+.++=+++...+.+...
T Consensus 224 L~~~Dl~~f~~~RQQgiGn-l~lLi~~G~~v~l~r~n~fwqdl~e~gv~Vlf~~d~L~~~~v~e~~rql~~~dk~~I~-- 300 (322)
T PRK02797 224 LRQCDLGYFIFARQQGIGT-LCLLIQLGKPVVLSRDNPFWQDLTEQGLPVLFTGDDLDEDIVREAQRQLASVDKNIIA-- 300 (322)
T ss_pred HHhCCEEEEeechhhHHhH-HHHHHHCCCcEEEecCCchHHHHHhCCCeEEecCCcccHHHHHHHHHHHHhhCcceee--
Confidence 999998887744 478884 5557999999999954 44333333 3222222 3445555554555544443332
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007215 507 QRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 507 ~~~~~sWe~~~~~~~~~y~ 525 (612)
|+=++..+...++++
T Consensus 301 ----Ff~pn~~~~W~~~l~ 315 (322)
T PRK02797 301 ----FFSPNYLQGWRNALA 315 (322)
T ss_pred ----ecCHhHHHHHHHHHH
Confidence 554555555555554
No 137
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=94.55 E-value=4.1 Score=42.80 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=85.4
Q ss_pred CcEEEEEec-cCCccCHHHHHHHHHHhhccCCCeEEEE-EecCCC-H---HHHHHHHHHcCC--ceEEec-CCCCHH--H
Q 007215 363 SKGAYFLGK-MVWAKGYRELIDLLAKHKNDLDGFKLDV-FGNGED-A---YEVQSAAKRLDL--NLNFQK-GRDHAD--D 431 (612)
Q Consensus 363 ~~~il~vGr-l~~~Kg~~~Li~A~~~l~~~~~~~~LvI-vG~g~~-~---~~l~~~~~~l~l--~v~f~g-~~~~~~--~ 431 (612)
++.-+.+|+ -++..+...+++++++... .++++++ .|-|.. . +++.+.++++-. .+..+. ..+-.+ +
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~~~--~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQFG--DDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHhcC--CCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 345567776 5677788777777766433 4666655 444432 2 445555665533 255544 444444 9
Q ss_pred HHhccceEEeccCC-CcchHHHHHHHHcCCcEEeeCCCC-ccccccCCcEEec----CCHHHHHHHHHHHHhCCCCC
Q 007215 432 SLHGYKVFINPSIS-DVLCTATAEALAMGKFVICADHPS-NEFFRSFPNCLTY----KTSEDFVARVKEALANDPQP 502 (612)
Q Consensus 432 ll~~aDv~V~PS~~-E~fgl~llEAMA~G~PVVas~~gg-~~~i~~~~~g~l~----~d~~~la~aI~~ll~~~~~~ 502 (612)
+++.||+.++.... .+.| +++=.+.+|+||+-+.... -..+....--+++ -|...++++=+++..-|...
T Consensus 262 lL~~cDl~if~~~RQQgiG-nI~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk~~ 337 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIG-NICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLANVDKQQ 337 (360)
T ss_pred HHHhCCEEEEeechhhhHh-HHHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhhCcccc
Confidence 99999999999765 7777 4566899999999996554 4444443222333 35566777766676555443
No 138
>PRK14986 glycogen phosphorylase; Provisional
Probab=94.52 E-value=0.16 Score=58.92 Aligned_cols=133 Identities=13% Similarity=0.014 Sum_probs=94.9
Q ss_pred cCCCCcEEEEEeccCCccCHHH-HHHH---HHHhhccC----CCeEEEEEecCCCH----HHHHH----HHH------Hc
Q 007215 359 QQAFSKGAYFLGKMVWAKGYRE-LIDL---LAKHKNDL----DGFKLDVFGNGEDA----YEVQS----AAK------RL 416 (612)
Q Consensus 359 ~~~~~~~il~vGrl~~~Kg~~~-Li~A---~~~l~~~~----~~~~LvIvG~g~~~----~~l~~----~~~------~l 416 (612)
+.++...++++=|+...|.... ++.. +.++++.- ....+++.|..... +.+.+ .++ +.
T Consensus 539 ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v 618 (815)
T PRK14986 539 VNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQI 618 (815)
T ss_pred cCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 3566667788889999999888 5554 55565541 24778888864332 22222 233 22
Q ss_pred CC--ceEEecCCCCH--HHHHhccceEEeccCC--CcchHHHHHHHHcCCcEEeeCCCCcccccc---CCcEEec-CCHH
Q 007215 417 DL--NLNFQKGRDHA--DDSLHGYKVFINPSIS--DVLCTATAEALAMGKFVICADHPSNEFFRS---FPNCLTY-KTSE 486 (612)
Q Consensus 417 ~l--~v~f~g~~~~~--~~ll~~aDv~V~PS~~--E~fgl~llEAMA~G~PVVas~~gg~~~i~~---~~~g~l~-~d~~ 486 (612)
+. .|.|+..+.-. +.++.++||..+.|+. |..|+.=+=||.-|.+.++|-.|...|+.+ ++||+++ .+.+
T Consensus 619 ~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~ 698 (815)
T PRK14986 619 GDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAE 698 (815)
T ss_pred cCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHH
Confidence 22 37788776633 3889999999999884 999999999999999999999998655554 7899999 6666
Q ss_pred HHHHH
Q 007215 487 DFVAR 491 (612)
Q Consensus 487 ~la~a 491 (612)
++.+-
T Consensus 699 ev~~~ 703 (815)
T PRK14986 699 EVEAL 703 (815)
T ss_pred HHHHH
Confidence 66543
No 139
>PLN02448 UDP-glycosyltransferase family protein
Probab=94.47 E-value=0.31 Score=53.95 Aligned_cols=123 Identities=15% Similarity=-0.042 Sum_probs=72.9
Q ss_pred cEEEEEeccCC--ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEe
Q 007215 364 KGAYFLGKMVW--AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~--~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~ 441 (612)
.+.+..|.... .+-+..++++++.. +..++++..++ ...+.+... .++.+.++.++.+ +|...++-.+
T Consensus 276 vvyvsfGs~~~~~~~~~~~~~~~l~~~-----~~~~lw~~~~~-~~~~~~~~~---~~~~v~~w~pQ~~-iL~h~~v~~f 345 (459)
T PLN02448 276 VLYVSLGSFLSVSSAQMDEIAAGLRDS-----GVRFLWVARGE-ASRLKEICG---DMGLVVPWCDQLK-VLCHSSVGGF 345 (459)
T ss_pred eEEEeecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCc-hhhHhHhcc---CCEEEeccCCHHH-HhccCccceE
Confidence 34456776532 23356666666654 44566555433 222332221 1355667766554 8888776333
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeCCCC-c----cccccC-CcEEec---------CCHHHHHHHHHHHHhC
Q 007215 442 PSISDVLCTATAEALAMGKFVICADHPS-N----EFFRSF-PNCLTY---------KTSEDFVARVKEALAN 498 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~~gg-~----~~i~~~-~~g~l~---------~d~~~la~aI~~ll~~ 498 (612)
-+ -+--.+++||+++|+|+|+-...+ . ..+.+. ..|.-+ -+.+++++++++++.+
T Consensus 346 vt--HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~ 415 (459)
T PLN02448 346 WT--HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDL 415 (459)
T ss_pred Ee--cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcC
Confidence 32 244568999999999999998764 2 123331 223322 3679999999999954
No 140
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=93.97 E-value=0.31 Score=55.96 Aligned_cols=123 Identities=13% Similarity=0.013 Sum_probs=89.3
Q ss_pred CCCCcEEEEEeccCCccCHHHHH----HHHHHhh-ccCCCeEEEEEecCCCH----HH----HHHHHHHcC--CceEEec
Q 007215 360 QAFSKGAYFLGKMVWAKGYRELI----DLLAKHK-NDLDGFKLDVFGNGEDA----YE----VQSAAKRLD--LNLNFQK 424 (612)
Q Consensus 360 ~~~~~~il~vGrl~~~Kg~~~Li----~A~~~l~-~~~~~~~LvIvG~g~~~----~~----l~~~~~~l~--l~v~f~g 424 (612)
.++...++++=|+...|-....+ .....++ +..|.+.+++.|..... .. +...++..+ +.|.|+.
T Consensus 484 ~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~ 563 (750)
T COG0058 484 DPNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLP 563 (750)
T ss_pred CCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeC
Confidence 45567788999999999776554 3445555 34466777888864432 22 222333333 3488988
Q ss_pred CCCCHH--HHHhccceEEeccCC--CcchHHHHHHHHcCCcEEeeCCCCccccc---cCCcEEec
Q 007215 425 GRDHAD--DSLHGYKVFINPSIS--DVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTY 482 (612)
Q Consensus 425 ~~~~~~--~ll~~aDv~V~PS~~--E~fgl~llEAMA~G~PVVas~~gg~~~i~---~~~~g~l~ 482 (612)
.++-.- -++.+|||-.+.|+. |..|+.-+=||.-|.+-|+|-.|...|+. ++.||+++
T Consensus 564 nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~f 628 (750)
T COG0058 564 NYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIF 628 (750)
T ss_pred CCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEe
Confidence 776433 788899999998875 99999999999999999999999865554 78999999
No 141
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=93.25 E-value=0.65 Score=53.28 Aligned_cols=132 Identities=15% Similarity=0.069 Sum_probs=81.8
Q ss_pred cCCCCcEEEEEeccCCccCHHHH----HHHHHHhhcc----CCCeEEEEEecCCCH----HHHHHHHHH----------c
Q 007215 359 QQAFSKGAYFLGKMVWAKGYREL----IDLLAKHKND----LDGFKLDVFGNGEDA----YEVQSAAKR----------L 416 (612)
Q Consensus 359 ~~~~~~~il~vGrl~~~Kg~~~L----i~A~~~l~~~----~~~~~LvIvG~g~~~----~~l~~~~~~----------l 416 (612)
++++...++++-|+...|-.... ++-+.++++. ...+.+++.|..... +.+.+++.+ .
T Consensus 440 ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v 519 (713)
T PF00343_consen 440 LDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEV 519 (713)
T ss_dssp --TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTT
T ss_pred CCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhh
Confidence 35666677899999999998873 3555666654 235789999975432 233332211 1
Q ss_pred CC--ceEEecCCCCHH--HHHhccceEEeccCC--CcchHHHHHHHHcCCcEEeeCCCCccccc---cCCcEEec-CCHH
Q 007215 417 DL--NLNFQKGRDHAD--DSLHGYKVFINPSIS--DVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTY-KTSE 486 (612)
Q Consensus 417 ~l--~v~f~g~~~~~~--~ll~~aDv~V~PS~~--E~fgl~llEAMA~G~PVVas~~gg~~~i~---~~~~g~l~-~d~~ 486 (612)
+. .|.|+..++-.- .++.++||-.+.|+. |..|+.-+=||.-|.+.++|-.|..-++. +.+|++++ .+.+
T Consensus 520 ~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ 599 (713)
T PF00343_consen 520 GDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAE 599 (713)
T ss_dssp CCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHH
T ss_pred ccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHH
Confidence 21 378888776333 889999999999875 99999999999999999999999855543 35788888 6666
Q ss_pred HHHH
Q 007215 487 DFVA 490 (612)
Q Consensus 487 ~la~ 490 (612)
++.+
T Consensus 600 ev~~ 603 (713)
T PF00343_consen 600 EVEE 603 (713)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 142
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=93.16 E-value=0.56 Score=52.34 Aligned_cols=122 Identities=19% Similarity=0.054 Sum_probs=67.2
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
+++..|.+.. .-.+..++++.+..++.|+ +++..-.+.....+ ..++....+.++. ++|+...+-++-+.
T Consensus 279 v~vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l-------~~n~~~~~W~PQ~-~lL~hp~v~~fitH 348 (500)
T PF00201_consen 279 VYVSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENL-------PKNVLIVKWLPQN-DLLAHPRVKLFITH 348 (500)
T ss_dssp EEEE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHH-------HTTEEEESS--HH-HHHTSTTEEEEEES
T ss_pred EEEecCcccc-hhHHHHHHHHHHHHhhCCC-cccccccccccccc-------cceEEEeccccch-hhhhcccceeeeec
Confidence 3456687653 2334434444333334455 56666555322222 1247777887754 58877655444432
Q ss_pred CCcchHHHHHHHHcCCcEEeeCCCC-c----cccccCCcEEec----CCHHHHHHHHHHHHhC
Q 007215 445 SDVLCTATAEALAMGKFVICADHPS-N----EFFRSFPNCLTY----KTSEDFVARVKEALAN 498 (612)
Q Consensus 445 ~E~fgl~llEAMA~G~PVVas~~gg-~----~~i~~~~~g~l~----~d~~~la~aI~~ll~~ 498 (612)
|--.++.||+.+|+|+|+-+.-+ . ..+.....|... -+.+++.++|.+++++
T Consensus 349 --gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 349 --GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLEN 409 (500)
T ss_dssp ----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHS
T ss_pred --cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhh
Confidence 45568999999999999997654 1 234443445443 4679999999999955
No 143
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.06 E-value=0.42 Score=55.61 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=93.5
Q ss_pred cCCCCcEEEEEeccCCccCHHH-H---HHHHHHhhccC----CCeEEEEEecCCCH----HHHHH----HHHH------c
Q 007215 359 QQAFSKGAYFLGKMVWAKGYRE-L---IDLLAKHKNDL----DGFKLDVFGNGEDA----YEVQS----AAKR------L 416 (612)
Q Consensus 359 ~~~~~~~il~vGrl~~~Kg~~~-L---i~A~~~l~~~~----~~~~LvIvG~g~~~----~~l~~----~~~~------l 416 (612)
+.++....+++=|+...|.... + ++.+.++++.- .+..+++.|..... +.+.+ .++. .
T Consensus 526 ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v 605 (797)
T cd04300 526 VDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDV 605 (797)
T ss_pred cCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhc
Confidence 3566677889999999999888 4 44566666541 23778888864432 22222 2221 1
Q ss_pred C--CceEEecCCCC--HHHHHhccceEEeccCC--CcchHHHHHHHHcCCcEEeeCCCCccccc---cCCcEEec-CCHH
Q 007215 417 D--LNLNFQKGRDH--ADDSLHGYKVFINPSIS--DVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTY-KTSE 486 (612)
Q Consensus 417 ~--l~v~f~g~~~~--~~~ll~~aDv~V~PS~~--E~fgl~llEAMA~G~PVVas~~gg~~~i~---~~~~g~l~-~d~~ 486 (612)
+ +.|.|+..+.- .+.++.+|||-.+-|+. |..|+.=+=+|.-|.+.++|-.|.+.|+. +++|++++ .+.+
T Consensus 606 ~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ 685 (797)
T cd04300 606 GDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAE 685 (797)
T ss_pred CCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHH
Confidence 1 13778876653 33889999999998884 99999999999999999999999754443 37899999 6666
Q ss_pred HHHH
Q 007215 487 DFVA 490 (612)
Q Consensus 487 ~la~ 490 (612)
+..+
T Consensus 686 ev~~ 689 (797)
T cd04300 686 EVEA 689 (797)
T ss_pred HHHH
Confidence 6654
No 144
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=92.99 E-value=0.97 Score=49.18 Aligned_cols=125 Identities=21% Similarity=0.149 Sum_probs=76.4
Q ss_pred CCCcEE-EEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceE
Q 007215 361 AFSKGA-YFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVF 439 (612)
Q Consensus 361 ~~~~~i-l~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~ 439 (612)
.+++++ +..|..... ..+++.+.+...+. +.++++...+.+. .+ .....++...+.++..+ ++..||++
T Consensus 235 ~d~~~vyvslGt~~~~---~~l~~~~~~a~~~l-~~~vi~~~~~~~~-~~----~~~p~n~~v~~~~p~~~-~l~~ad~v 304 (406)
T COG1819 235 ADRPIVYVSLGTVGNA---VELLAIVLEALADL-DVRVIVSLGGARD-TL----VNVPDNVIVADYVPQLE-LLPRADAV 304 (406)
T ss_pred CCCCeEEEEcCCcccH---HHHHHHHHHHHhcC-CcEEEEecccccc-cc----ccCCCceEEecCCCHHH-HhhhcCEE
Confidence 444444 455665443 44555444333332 4666666643221 11 12222355566666555 99999999
Q ss_pred EeccCCCcchHHHHHHHHcCCcEEeeCCCC-c---c-ccccCCcEEec----CCHHHHHHHHHHHHhCC
Q 007215 440 INPSISDVLCTATAEALAMGKFVICADHPS-N---E-FFRSFPNCLTY----KTSEDFVARVKEALAND 499 (612)
Q Consensus 440 V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~---~-~i~~~~~g~l~----~d~~~la~aI~~ll~~~ 499 (612)
|... --.++.||+..|+|+|+-..+. . . -+..-..|... .+++.++++|.++|.++
T Consensus 305 I~hG----G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 305 IHHG----GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred EecC----CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 9873 4458999999999999997774 2 2 22333344333 68899999999999543
No 145
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=92.66 E-value=1.1 Score=45.85 Aligned_cols=86 Identities=22% Similarity=0.198 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHhhccCCCeEEEEEecCCCHH--HHHHHHHHc-CC-ceEEecCCCCHHHHHhccceEEeccCCCcchHHH
Q 007215 377 GYRELIDLLAKHKNDLDGFKLDVFGNGEDAY--EVQSAAKRL-DL-NLNFQKGRDHADDSLHGYKVFINPSISDVLCTAT 452 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~--~l~~~~~~l-~l-~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~l 452 (612)
+...+++.+..+.+..|+.+++|-=. |... .-.+..++. .. .+.++..-.+..+++..||.++.-+ +.+-
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~H-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~Vvtin-----StvG 211 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPH-PDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDAVVTIN-----STVG 211 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEEC-chhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCEEEEEC-----CHHH
Confidence 55667777777777778887766543 3210 000112221 22 2556666667779999999776553 4588
Q ss_pred HHHHHcCCcEEeeCCC
Q 007215 453 AEALAMGKFVICADHP 468 (612)
Q Consensus 453 lEAMA~G~PVVas~~g 468 (612)
+|||.+|+||++...+
T Consensus 212 lEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 212 LEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHHcCCceEEecCc
Confidence 9999999999997544
No 146
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=92.05 E-value=17 Score=39.86 Aligned_cols=114 Identities=8% Similarity=0.175 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhccCCCeEEEEEec-------CC-CHHHHHHHHHHcCCc--eEE-ecCCCCHH--HHHhccceEEeccCC
Q 007215 379 RELIDLLAKHKNDLDGFKLDVFGN-------GE-DAYEVQSAAKRLDLN--LNF-QKGRDHAD--DSLHGYKVFINPSIS 445 (612)
Q Consensus 379 ~~Li~A~~~l~~~~~~~~LvIvG~-------g~-~~~~l~~~~~~l~l~--v~f-~g~~~~~~--~ll~~aDv~V~PS~~ 445 (612)
..+.+++..+.++ +.+++++-. ++ |....+++.+.+.-. +++ .....+.+ .+++.||++|-.-.+
T Consensus 260 ~~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH 337 (426)
T PRK10017 260 KAFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH 337 (426)
T ss_pred HHHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch
Confidence 4455666666655 444544442 22 233344555554432 333 34445555 889999999877654
Q ss_pred CcchHHHHHHHHcCCcEEeeCCCC-c-ccccc-C-CcE-Eec--CCHHHHHHHHHHHHhCC
Q 007215 446 DVLCTATAEALAMGKFVICADHPS-N-EFFRS-F-PNC-LTY--KTSEDFVARVKEALAND 499 (612)
Q Consensus 446 E~fgl~llEAMA~G~PVVas~~gg-~-~~i~~-~-~~g-~l~--~d~~~la~aI~~ll~~~ 499 (612)
.++=|+++|+|+|+-.... . .++.. + ... ... -+.+++.+++.+++++.
T Consensus 338 -----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 338 -----SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred -----HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCH
Confidence 5788999999999997753 2 22222 1 222 222 46788999999999443
No 147
>PLN03004 UDP-glycosyltransferase
Probab=92.02 E-value=1.3 Score=48.86 Aligned_cols=125 Identities=16% Similarity=0.046 Sum_probs=74.4
Q ss_pred cEEEEEeccC--CccCHHHHHHHHHHhhccCCCeEEEEEecCC-------CH-----HHHHHHHHHcCCceEEecCCCCH
Q 007215 364 KGAYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNGE-------DA-----YEVQSAAKRLDLNLNFQKGRDHA 429 (612)
Q Consensus 364 ~~il~vGrl~--~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~-------~~-----~~l~~~~~~l~l~v~f~g~~~~~ 429 (612)
-+.+.+|... +.+.+..|..+++.... .+ +..+.... +. +.+.+.++.. .+.+.++.++.
T Consensus 272 VvyvsfGS~~~~~~~q~~ela~gL~~s~~---~F-lW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~--g~~v~~W~PQ~ 345 (451)
T PLN03004 272 VVFLCFGSLGLFSKEQVIEIAVGLEKSGQ---RF-LWVVRNPPELEKTELDLKSLLPEGFLSRTEDK--GMVVKSWAPQV 345 (451)
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHCCC---CE-EEEEcCCccccccccchhhhCChHHHHhccCC--cEEEEeeCCHH
Confidence 3445667752 34566677777766532 23 33333211 01 1222223222 26666777766
Q ss_pred HHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-ccccc-CCcEEec-------CCHHHHHHHHHHHH
Q 007215 430 DDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRS-FPNCLTY-------KTSEDFVARVKEAL 496 (612)
Q Consensus 430 ~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~-~~~g~l~-------~d~~~la~aI~~ll 496 (612)
+ +|+.+++-.+-+. +--++++||+++|+|+|+....+ + ..+.+ -..|..+ -+.++++++|++++
T Consensus 346 ~-iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm 422 (451)
T PLN03004 346 P-VLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEII 422 (451)
T ss_pred H-HhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHh
Confidence 6 8999987444433 33468999999999999997654 2 23333 2445443 27799999999999
Q ss_pred h
Q 007215 497 A 497 (612)
Q Consensus 497 ~ 497 (612)
.
T Consensus 423 ~ 423 (451)
T PLN03004 423 G 423 (451)
T ss_pred c
Confidence 4
No 148
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=91.79 E-value=0.53 Score=54.59 Aligned_cols=133 Identities=15% Similarity=0.038 Sum_probs=93.0
Q ss_pred cCCCCcEEEEEeccCCccCHHH-HHH---HHHHhhccC----CCeEEEEEecCCCH----HHHHHH----HHH------c
Q 007215 359 QQAFSKGAYFLGKMVWAKGYRE-LID---LLAKHKNDL----DGFKLDVFGNGEDA----YEVQSA----AKR------L 416 (612)
Q Consensus 359 ~~~~~~~il~vGrl~~~Kg~~~-Li~---A~~~l~~~~----~~~~LvIvG~g~~~----~~l~~~----~~~------l 416 (612)
+.++....+++=|+...|.... ++. .+.++++.- ....+++.|..... +.+.++ ++. .
T Consensus 523 ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v 602 (794)
T TIGR02093 523 VDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAV 602 (794)
T ss_pred cCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 3455566678889999998888 554 455565541 24678888864432 222222 221 1
Q ss_pred C--CceEEecCCCC--HHHHHhccceEEeccCC--CcchHHHHHHHHcCCcEEeeCCCCccccc---cCCcEEec-CCHH
Q 007215 417 D--LNLNFQKGRDH--ADDSLHGYKVFINPSIS--DVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTY-KTSE 486 (612)
Q Consensus 417 ~--l~v~f~g~~~~--~~~ll~~aDv~V~PS~~--E~fgl~llEAMA~G~PVVas~~gg~~~i~---~~~~g~l~-~d~~ 486 (612)
+ +.|.|+..+.- .+.++.+|||..+-|+. |..|+.=+=+|.-|.+.++|-.|.+.|+. +++|++++ .+.+
T Consensus 603 ~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ 682 (794)
T TIGR02093 603 GDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVE 682 (794)
T ss_pred CCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHH
Confidence 1 23778876653 33889999999998884 99999999999999999999999754443 36899999 6777
Q ss_pred HHHHH
Q 007215 487 DFVAR 491 (612)
Q Consensus 487 ~la~a 491 (612)
++.+.
T Consensus 683 ev~~~ 687 (794)
T TIGR02093 683 EVEAL 687 (794)
T ss_pred HHHHH
Confidence 66543
No 149
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=91.46 E-value=0.32 Score=56.35 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=92.3
Q ss_pred cCCCCcEEEEEeccCCccCHHH-HHHH---HHHhhccC----CCeEEEEEecCCCH----HHHHH----HHHHcC-----
Q 007215 359 QQAFSKGAYFLGKMVWAKGYRE-LIDL---LAKHKNDL----DGFKLDVFGNGEDA----YEVQS----AAKRLD----- 417 (612)
Q Consensus 359 ~~~~~~~il~vGrl~~~Kg~~~-Li~A---~~~l~~~~----~~~~LvIvG~g~~~----~~l~~----~~~~l~----- 417 (612)
+.++...++++=|+...|.... ++.. +.++++.- ....+++.|..... +.+.+ .++..+
T Consensus 525 ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v 604 (798)
T PRK14985 525 INPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLV 604 (798)
T ss_pred cCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhh
Confidence 3455556678889999998887 5554 45555441 23778888874432 22222 222221
Q ss_pred ---CceEEecCCCC--HHHHHhccceEEeccCC--CcchHHHHHHHHcCCcEEeeCCCCcccccc---CCcEEec-CCHH
Q 007215 418 ---LNLNFQKGRDH--ADDSLHGYKVFINPSIS--DVLCTATAEALAMGKFVICADHPSNEFFRS---FPNCLTY-KTSE 486 (612)
Q Consensus 418 ---l~v~f~g~~~~--~~~ll~~aDv~V~PS~~--E~fgl~llEAMA~G~PVVas~~gg~~~i~~---~~~g~l~-~d~~ 486 (612)
+.|.|+..+.- .+.++.++||..+.|+. |..|+.=+=+|.-|.+.++|-.|..-|+.+ ++|++++ .+.+
T Consensus 605 ~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ 684 (798)
T PRK14985 605 GDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVE 684 (798)
T ss_pred CCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHH
Confidence 23778877653 33889999999998874 999999999999999999999998655544 7899999 6666
Q ss_pred HHHH
Q 007215 487 DFVA 490 (612)
Q Consensus 487 ~la~ 490 (612)
++.+
T Consensus 685 ev~~ 688 (798)
T PRK14985 685 QVKA 688 (798)
T ss_pred HHHH
Confidence 6554
No 150
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=91.27 E-value=0.33 Score=51.95 Aligned_cols=175 Identities=12% Similarity=0.065 Sum_probs=84.8
Q ss_pred cCCeEEEeChhhhc-------cCCCcEEEeCCCCC-C-CCCCC--ccchhhhhhccCCCCcEEEEEeccCCccCH-----
Q 007215 315 YCDKVLRLSAATQD-------LPKSVICNVHGVNP-K-FLQIG--EKVATDREQGQQAFSKGAYFLGKMVWAKGY----- 378 (612)
Q Consensus 315 ~ad~vI~~S~~~~~-------~~~~~i~vinGVd~-~-~f~~~--~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~----- 378 (612)
..|.+++.|+..++ +.++++.+ -|..- + ++... ......+.++++.++++|+|+-.......-
T Consensus 134 ~~d~~~~~s~~~~~~~~~~f~~~~~~i~~-~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~ 212 (369)
T PF04464_consen 134 NYDYFIVSSEFEKEIFKKAFGYPEDKILV-TGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKF 212 (369)
T ss_dssp T-SEEEESSHHHHHHHHHHTT--GGGEEE-S--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS-
T ss_pred CCcEEEECCHHHHHHHHHHhccCcceEEE-eCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccccc
Confidence 46899999997665 22333333 45421 1 11111 123455667777888899998543322211
Q ss_pred -HHH--HHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHH
Q 007215 379 -REL--IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEA 455 (612)
Q Consensus 379 -~~L--i~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEA 455 (612)
... ++.+..+. ..++.+++-............ ......+.+...-.+..+++..||++|-= ++-++.|+
T Consensus 213 ~~~~~~~~~l~~~~--~~~~~li~k~Hp~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~~aDiLITD-----ySSi~fD~ 284 (369)
T PF04464_consen 213 FFSDLDFEKLNFLL--KNNYVLIIKPHPNMKKKFKDF-KEDNSNIIFVSDNEDIYDLLAAADILITD-----YSSIIFDF 284 (369)
T ss_dssp ---TT-HHHHHHHH--TTTEEEEE--SHHHHTT-----TT-TTTEEE-TT-S-HHHHHHT-SEEEES-----S-THHHHH
T ss_pred cccccCHHHHHHHh--CCCcEEEEEeCchhhhchhhh-hccCCcEEECCCCCCHHHHHHhcCEEEEe-----chhHHHHH
Confidence 112 22222222 257877766631111111111 12222377777777778999999998764 45589999
Q ss_pred HHcCCcEEee--CCC-------CccccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 456 LAMGKFVICA--DHP-------SNEFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 456 MA~G~PVVas--~~g-------g~~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
+.+++|||-. |.. ......+..-|-.+.|.++|.++|..++.+
T Consensus 285 ~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~ 336 (369)
T PF04464_consen 285 LLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIENIIEN 336 (369)
T ss_dssp GGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHHH
T ss_pred HHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHHhhhhC
Confidence 9999999965 331 111122223355668999999999998844
No 151
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.90 E-value=0.79 Score=39.07 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=52.7
Q ss_pred EEEEec-CCCHHHHHHHHHHcCCceEEe---cCCCCH----HHHHhccceEEeccCC---CcchHHHHHHHHcCCcEEee
Q 007215 397 LDVFGN-GEDAYEVQSAAKRLDLNLNFQ---KGRDHA----DDSLHGYKVFINPSIS---DVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 397 LvIvG~-g~~~~~l~~~~~~l~l~v~f~---g~~~~~----~~ll~~aDv~V~PS~~---E~fgl~llEAMA~G~PVVas 465 (612)
++|+|+ ......+++.++++|....++ +...+. ++.+..+|+.|++..+ ...-.+--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 577776 345588999999999886666 333322 3677778988888655 33444566788899999999
Q ss_pred CCCCc
Q 007215 466 DHPSN 470 (612)
Q Consensus 466 ~~gg~ 470 (612)
+..|.
T Consensus 82 ~~~~~ 86 (97)
T PF10087_consen 82 RSRGV 86 (97)
T ss_pred CCCCH
Confidence 86553
No 152
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=90.65 E-value=18 Score=38.22 Aligned_cols=129 Identities=19% Similarity=0.114 Sum_probs=81.0
Q ss_pred CcEEEEEeccCCccCHHHHHHHHHHhhccCCCe---EEEEEecCCCHHHHHHHHHHcC--CceEEecCCCCHHHHHhccc
Q 007215 363 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGF---KLDVFGNGEDAYEVQSAAKRLD--LNLNFQKGRDHADDSLHGYK 437 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~---~LvIvG~g~~~~~l~~~~~~l~--l~v~f~g~~~~~~~ll~~aD 437 (612)
..+++.+|. -.-|.+.+..+++.. ...+++ -++|.|.--...+.+++.+.-. -.++++.+..+..++++.|+
T Consensus 220 ~~Ilvs~GG--G~dG~eLi~~~l~A~-~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~ 296 (400)
T COG4671 220 FDILVSVGG--GADGAELIETALAAA-QLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR 296 (400)
T ss_pred ceEEEecCC--ChhhHHHHHHHHHHh-hhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh
Confidence 346677774 334554443333222 111333 3667776555566666554444 23888999999999999999
Q ss_pred eEEeccCCCcchHHHHHHHHcCCcEEeeCCC--Ccccccc----CCcEEe----c--CCHHHHHHHHHHHHhC
Q 007215 438 VFINPSISDVLCTATAEALAMGKFVICADHP--SNEFFRS----FPNCLT----Y--KTSEDFVARVKEALAN 498 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAMA~G~PVVas~~g--g~~~i~~----~~~g~l----~--~d~~~la~aI~~ll~~ 498 (612)
..|.-+=+ +++.|-++.|||.+.-+.. +.|..+. .+-|++ . -+++.||++|..+++.
T Consensus 297 ~vVSm~GY----NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 297 LVVSMGGY----NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred eeeecccc----hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 88765422 5789999999998887654 3332222 122332 2 4689999999999953
No 153
>PLN02208 glycosyltransferase family protein
Probab=89.81 E-value=4.2 Score=44.75 Aligned_cols=77 Identities=10% Similarity=-0.014 Sum_probs=52.6
Q ss_pred eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----cc-cccc-CCcEEec-------CCHH
Q 007215 420 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRS-FPNCLTY-------KTSE 486 (612)
Q Consensus 420 v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~~-~i~~-~~~g~l~-------~d~~ 486 (612)
+.+.++.++.+ +|+...+-.+-+. +--++++||+++|+|+|+-..-+ +. .+++ -..|..+ -+.+
T Consensus 313 ~~v~~W~PQ~~-iL~H~~v~~FvtH--cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~ 389 (442)
T PLN02208 313 VVWGGWVQQPL-ILDHPSIGCFVNH--CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKE 389 (442)
T ss_pred cEeeccCCHHH-HhcCCccCeEEcc--CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHH
Confidence 55567777666 8888776555543 33468999999999999997654 22 2233 2445444 2678
Q ss_pred HHHHHHHHHHhCC
Q 007215 487 DFVARVKEALAND 499 (612)
Q Consensus 487 ~la~aI~~ll~~~ 499 (612)
+++++|.+++.++
T Consensus 390 ~l~~ai~~~m~~~ 402 (442)
T PLN02208 390 SLSNAIKSVMDKD 402 (442)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999543
No 154
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=89.76 E-value=11 Score=38.77 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHhhccCCCeEEEEEec--CCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCCCcchHHH
Q 007215 377 GYRELIDLLAKHKNDLDGFKLDVFGN--GEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTAT 452 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~~~~~LvIvG~--g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~l 452 (612)
..+.+.+++..+.++. +.+++++.. ..|.+..+++.+.+.-...++...+..+ ++++.||++|-...+ .+
T Consensus 189 ~~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-----~~ 262 (298)
T TIGR03609 189 RLLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH-----AL 262 (298)
T ss_pred HHHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH-----HH
Confidence 3567777777775542 455555443 3455555555555543323332222222 788889988877665 67
Q ss_pred HHHHHcCCcEEeeCCC
Q 007215 453 AEALAMGKFVICADHP 468 (612)
Q Consensus 453 lEAMA~G~PVVas~~g 468 (612)
+=|+.+|+|+|+-...
T Consensus 263 I~A~~~gvP~i~i~y~ 278 (298)
T TIGR03609 263 ILAAAAGVPFVALSYD 278 (298)
T ss_pred HHHHHcCCCEEEeecc
Confidence 8899999999987443
No 155
>PLN03007 UDP-glucosyltransferase family protein
Probab=89.62 E-value=4.8 Score=44.86 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=70.8
Q ss_pred cEEEEEeccCC--ccCHHHHHHHHHHhhccCCCeEEEEEecCCC--------HHHHHHHHHHcCCceEEecCCCCHHHHH
Q 007215 364 KGAYFLGKMVW--AKGYRELIDLLAKHKNDLDGFKLDVFGNGED--------AYEVQSAAKRLDLNLNFQKGRDHADDSL 433 (612)
Q Consensus 364 ~~il~vGrl~~--~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--------~~~l~~~~~~l~l~v~f~g~~~~~~~ll 433 (612)
.+.+.+|.... .+.+..+.++++... .++ +..++.... .+.+.+.+. +-.+.+.++.++.+ +|
T Consensus 287 vvyvsfGS~~~~~~~~~~~~~~~l~~~~---~~f-lw~~~~~~~~~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~-iL 359 (482)
T PLN03007 287 VIYLSFGSVASFKNEQLFEIAAGLEGSG---QNF-IWVVRKNENQGEKEEWLPEGFEERTK--GKGLIIRGWAPQVL-IL 359 (482)
T ss_pred eEEEeecCCcCCCHHHHHHHHHHHHHCC---CCE-EEEEecCCcccchhhcCCHHHHHHhc--cCCEEEecCCCHHH-Hh
Confidence 34456787643 345555556655542 133 444453211 112222222 22366678877654 88
Q ss_pred hccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----cc-cccc-CCcEEe---------c---CCHHHHHHHHHHH
Q 007215 434 HGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRS-FPNCLT---------Y---KTSEDFVARVKEA 495 (612)
Q Consensus 434 ~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~~-~i~~-~~~g~l---------~---~d~~~la~aI~~l 495 (612)
..+++-.+-+. +--++++||+++|+|+|+....+ +. .+.+ -..|.- . -+.++++++|+++
T Consensus 360 ~h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~ 437 (482)
T PLN03007 360 DHQATGGFVTH--CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREV 437 (482)
T ss_pred ccCccceeeec--CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHH
Confidence 88876333332 33468999999999999997654 11 1111 011111 1 3789999999999
Q ss_pred HhC
Q 007215 496 LAN 498 (612)
Q Consensus 496 l~~ 498 (612)
+.+
T Consensus 438 m~~ 440 (482)
T PLN03007 438 IVG 440 (482)
T ss_pred hcC
Confidence 954
No 156
>PLN02562 UDP-glycosyltransferase
Probab=89.05 E-value=3.6 Score=45.37 Aligned_cols=124 Identities=12% Similarity=0.012 Sum_probs=73.7
Q ss_pred cEEEEEeccC---CccCHHHHHHHHHHhhccCCCeEEEEEecCC---CHHHHHHHHHHcCCceEEecCCCCHHHHHhccc
Q 007215 364 KGAYFLGKMV---WAKGYRELIDLLAKHKNDLDGFKLDVFGNGE---DAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYK 437 (612)
Q Consensus 364 ~~il~vGrl~---~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~---~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aD 437 (612)
.+.+..|... +.+-+..++.++++... .+ +..+..+. ..+.+.+.. .-++.+.++.++.+ +|...+
T Consensus 275 vvyvsfGS~~~~~~~~~~~~l~~~l~~~g~---~f-iW~~~~~~~~~l~~~~~~~~---~~~~~v~~w~PQ~~-iL~h~~ 346 (448)
T PLN02562 275 VIYISFGSWVSPIGESNVRTLALALEASGR---PF-IWVLNPVWREGLPPGYVERV---SKQGKVVSWAPQLE-VLKHQA 346 (448)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHCCC---CE-EEEEcCCchhhCCHHHHHHh---ccCEEEEecCCHHH-HhCCCc
Confidence 3556778753 44566677777766632 22 33343211 112222222 22466667776655 888777
Q ss_pred eEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-ccccc-CCcEEec--CCHHHHHHHHHHHHh
Q 007215 438 VFINPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRS-FPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~-~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
+-.+-+. +--.+++||+++|+|+|+....+ + ..+.+ -..|+-+ -+.++++++|++++.
T Consensus 347 v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~ 412 (448)
T PLN02562 347 VGCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVME 412 (448)
T ss_pred cceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhC
Confidence 5444432 33468999999999999987654 2 22332 2344444 578999999999994
No 157
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.87 E-value=2 Score=43.87 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcC-Cc-eEEecCCCCHH--HHHhccceEEeccCCCcchHHH
Q 007215 377 GYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLD-LN-LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTAT 452 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~-l~-v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~l 452 (612)
..+...++++.+.++ +++++++|+.++.+..+++.+..+ .. +.+.|..+-.+ .+++.||++|-+.. | ++
T Consensus 138 ~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds----g-~~ 210 (279)
T cd03789 138 PAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS----G-PM 210 (279)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC----H-HH
Confidence 445667777777665 788999998777666666665542 23 44455543333 89999999998842 3 33
Q ss_pred HHHHHcCCcEEeeCCCC
Q 007215 453 AEALAMGKFVICADHPS 469 (612)
Q Consensus 453 lEAMA~G~PVVas~~gg 469 (612)
--|.|.|+|+|+--.+.
T Consensus 211 HlA~a~~~p~i~l~g~~ 227 (279)
T cd03789 211 HLAAALGTPTVALFGPT 227 (279)
T ss_pred HHHHHcCCCEEEEECCC
Confidence 34469999999884443
No 158
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=88.84 E-value=5.3 Score=44.09 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=50.9
Q ss_pred ceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccccC-CcEEec---CCHHHHH
Q 007215 419 NLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRSF-PNCLTY---KTSEDFV 489 (612)
Q Consensus 419 ~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~~~-~~g~l~---~d~~~la 489 (612)
++.+.++.++.+ +|...++-.+-+ -+--++++||+++|+|+|+....+- ..+.+. ..|+.+ -+.++++
T Consensus 325 ~g~v~~w~PQ~~-iL~h~~v~~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~ 401 (451)
T PLN02410 325 RGYIVKWAPQKE-VLSHPAVGGFWS--HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVE 401 (451)
T ss_pred CeEEEccCCHHH-HhCCCccCeeee--cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHH
Confidence 355567766665 777765532222 1334589999999999999876542 222222 455544 5789999
Q ss_pred HHHHHHHhC
Q 007215 490 ARVKEALAN 498 (612)
Q Consensus 490 ~aI~~ll~~ 498 (612)
++|++++.+
T Consensus 402 ~av~~lm~~ 410 (451)
T PLN02410 402 RAVKRLMVE 410 (451)
T ss_pred HHHHHHHcC
Confidence 999999944
No 159
>PLN00414 glycosyltransferase family protein
Probab=88.22 E-value=7 Score=43.11 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-ccccc-CCcEEe
Q 007215 408 EVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRS-FPNCLT 481 (612)
Q Consensus 408 ~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~-~~~g~l 481 (612)
.+.+.++..| ..+.++.++.+ +|....+..+-+ -+--++++||+++|+|+|+-+..+ + ..+.+ -..|..
T Consensus 304 ~f~~r~~~~g--~vv~~w~PQ~~-vL~h~~v~~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~ 378 (446)
T PLN00414 304 GFEERVKGRG--IVWEGWVEQPL-ILSHPSVGCFVN--HCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVK 378 (446)
T ss_pred hHHHHhcCCC--eEEeccCCHHH-HhcCCccceEEe--cCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEE
Confidence 3444444333 44457766665 887774433322 234468999999999999997654 2 23322 244544
Q ss_pred c-------CCHHHHHHHHHHHHhCC
Q 007215 482 Y-------KTSEDFVARVKEALAND 499 (612)
Q Consensus 482 ~-------~d~~~la~aI~~ll~~~ 499 (612)
+ -+.+++++++++++.++
T Consensus 379 ~~~~~~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 379 VQREDSGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred eccccCCccCHHHHHHHHHHHhcCC
Confidence 4 27789999999999543
No 160
>PLN02173 UDP-glucosyl transferase family protein
Probab=87.56 E-value=6.1 Score=43.57 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=52.7
Q ss_pred ceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-cccccC-CcEEec--------CC
Q 007215 419 NLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRSF-PNCLTY--------KT 484 (612)
Q Consensus 419 ~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~~-~~g~l~--------~d 484 (612)
++.+.++.++.+ +|+..++-.+-+. +-.++++||+++|+|+|+-+.-+ + ..+++. ..|.-+ -+
T Consensus 318 ~~~i~~W~PQ~~-iL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~ 394 (449)
T PLN02173 318 KSLVLKWSPQLQ-VLSNKAIGCFMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAK 394 (449)
T ss_pred ceEEeCCCCHHH-HhCCCccceEEec--CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCccc
Confidence 367778877554 8888775555443 34568999999999999997654 1 233332 344333 16
Q ss_pred HHHHHHHHHHHHhC
Q 007215 485 SEDFVARVKEALAN 498 (612)
Q Consensus 485 ~~~la~aI~~ll~~ 498 (612)
.+++++++++++.+
T Consensus 395 ~e~v~~av~~vm~~ 408 (449)
T PLN02173 395 REEIEFSIKEVMEG 408 (449)
T ss_pred HHHHHHHHHHHhcC
Confidence 79999999999943
No 161
>PLN02764 glycosyltransferase family protein
Probab=87.48 E-value=3.9 Score=45.08 Aligned_cols=76 Identities=8% Similarity=-0.033 Sum_probs=50.7
Q ss_pred eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c----ccccc-CCcEEec-------CCHH
Q 007215 420 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-N----EFFRS-FPNCLTY-------KTSE 486 (612)
Q Consensus 420 v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~----~~i~~-~~~g~l~-------~d~~ 486 (612)
+.+.++.++.+ +|+...+..+-+. +--++++||+++|+|+|+-+..+ . ..+.+ -..|+.+ -+.+
T Consensus 319 ~v~~~W~PQ~~-vL~h~~v~~FvtH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e 395 (453)
T PLN02764 319 VVWGGWVQQPL-ILSHPSVGCFVSH--CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKE 395 (453)
T ss_pred cEEeCCCCHHH-HhcCcccCeEEec--CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHH
Confidence 45557777666 7777655333322 34468999999999999998764 1 23333 2334432 2779
Q ss_pred HHHHHHHHHHhC
Q 007215 487 DFVARVKEALAN 498 (612)
Q Consensus 487 ~la~aI~~ll~~ 498 (612)
++.+++++++.+
T Consensus 396 ~i~~av~~vm~~ 407 (453)
T PLN02764 396 SLRDAINSVMKR 407 (453)
T ss_pred HHHHHHHHHhcC
Confidence 999999999954
No 162
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=86.62 E-value=4 Score=42.87 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=64.1
Q ss_pred hhhccCCCCcEE-EEEec-cCCccCH--HHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc-eEEecCCCCH
Q 007215 355 REQGQQAFSKGA-YFLGK-MVWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKGRDHA 429 (612)
Q Consensus 355 ~~~~~~~~~~~i-l~vGr-l~~~Kg~--~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~-v~f~g~~~~~ 429 (612)
..+++...++.| +..|. ..+.|.. +...+.++.+.++ +.++++.|+..+.+..+++.+..+.. +.+.|..+=.
T Consensus 166 ~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~ 243 (334)
T TIGR02195 166 AKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLD 243 (334)
T ss_pred HHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHH
Confidence 334444334444 45554 2355543 3666666666543 57889999877766666655554433 3355654433
Q ss_pred H--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 430 D--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 430 ~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+ .+++.||++|-.. +. .+==|.|.|+|+|+-=
T Consensus 244 el~ali~~a~l~I~~D---SG--p~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 244 EAVDLIALAKAVVTND---SG--LMHVAAALNRPLVALY 277 (334)
T ss_pred HHHHHHHhCCEEEeeC---CH--HHHHHHHcCCCEEEEE
Confidence 3 9999999998774 22 3445679999999863
No 163
>PLN00164 glucosyltransferase; Provisional
Probab=86.18 E-value=9.8 Score=42.39 Aligned_cols=76 Identities=11% Similarity=-0.043 Sum_probs=50.2
Q ss_pred eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----cc-cccc-CCcEEec---------CC
Q 007215 420 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRS-FPNCLTY---------KT 484 (612)
Q Consensus 420 v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~~-~i~~-~~~g~l~---------~d 484 (612)
+.+.++.++.+ +|...++-.+-+. +--.+++||+++|+|+|+-..-+ +. .+.+ -..|+.+ -+
T Consensus 341 ~~v~~w~PQ~~-iL~h~~vg~fvtH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~ 417 (480)
T PLN00164 341 LVWPTWAPQKE-ILAHAAVGGFVTH--CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVE 417 (480)
T ss_pred eEEeecCCHHH-HhcCcccCeEEee--cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCc
Confidence 44557766665 8888775433332 23358999999999999987653 22 2333 2445433 15
Q ss_pred HHHHHHHHHHHHhC
Q 007215 485 SEDFVARVKEALAN 498 (612)
Q Consensus 485 ~~~la~aI~~ll~~ 498 (612)
.++++++|.+++.+
T Consensus 418 ~e~l~~av~~vm~~ 431 (480)
T PLN00164 418 AAELERAVRSLMGG 431 (480)
T ss_pred HHHHHHHHHHHhcC
Confidence 78999999999954
No 164
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=86.10 E-value=43 Score=34.24 Aligned_cols=235 Identities=20% Similarity=0.218 Sum_probs=108.1
Q ss_pred hHhhhccCCCccEEEECC-C------chhHHhhhhHHHhhhCC---CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHH
Q 007215 242 DTSQFIPSKDADIAILEE-P------EHLNWYHHGKRWTDKFN---HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWV 311 (612)
Q Consensus 242 ~l~~~l~~~~pDVVh~~~-p------~~l~~~~~~~~~~~~~~---pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~ 311 (612)
...+.+. ++||+++.+ | ..++.+. +..++.+ .+|++.|++..-..++ .. .++..+
T Consensus 54 e~v~~vN--~yDI~m~nSvPa~~vqE~~iNnY~---kii~~Ik~~ik~V~~~Hdh~~lsI~r--n~--------~le~~m 118 (355)
T PF11440_consen 54 ETVKKVN--DYDIVMFNSVPATKVQEAIINNYE---KIIKKIKPSIKVVGFMHDHNKLSIDR--NP--------YLEGTM 118 (355)
T ss_dssp HHHHHHT--SSSEEEEEE--BTTS-HHHHHHHH---HHHHCS-TTSEEEEEE---SHHHHTT--BS--------SHHHHH
T ss_pred HHHHHhh--ccCEEEEecccCchHHHHHHHHHH---HHHHhccccceeEEEeeccceeeccc--cc--------cHHHHH
Confidence 3444444 799998832 2 2344444 4444443 5688889875443322 11 122222
Q ss_pred HHhcCCeEEEeChhh-------hc-cCC-----CcEEEeCCCCCCCCCCCccchhhhhhccCCCCcEE---EEEeccCCc
Q 007215 312 TRAYCDKVLRLSAAT-------QD-LPK-----SVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGA---YFLGKMVWA 375 (612)
Q Consensus 312 ~~~~ad~vI~~S~~~-------~~-~~~-----~~i~vinGVd~~~f~~~~~~~~~~~~~~~~~~~~i---l~vGrl~~~ 375 (612)
. .||.|++-|... .+ +|. +++.-.+-+. .|-+|.+....+..+......+.. +|+||..-.
T Consensus 119 ~--~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~-nfqpp~~i~~~Rstywkd~se~nmnv~~yigR~Tt~ 195 (355)
T PF11440_consen 119 N--EMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMVF-NFQPPMDINKYRSTYWKDVSEKNMNVNRYIGRQTTW 195 (355)
T ss_dssp H--H-SEEEES-TTSHHHHTHHHHHS-SS--SSS-------EE-E----B-HHHHHHHH---GGGSEEEEEEEE--SSGG
T ss_pred H--hhcEEEeccccchHHHHHHHhhccccCchhhhhhhcceee-ecCCcccHHHHHHHHhhhhHhhhcccceeeeeeeee
Confidence 2 269999988841 22 332 1222222111 011222333444444433333333 799999999
Q ss_pred cCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc-------------------eEEecCCCCHH--HHHh
Q 007215 376 KGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-------------------LNFQKGRDHAD--DSLH 434 (612)
Q Consensus 376 Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~-------------------v~f~g~~~~~~--~ll~ 434 (612)
||+..+++.-++..+. ++++-++-|-...... -. +.+.+.. +.++|..-..+ +.++
T Consensus 196 kG~~~mfD~h~~~lK~-~~~~t~~~GierS~A~-~~-i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Ma 272 (355)
T PF11440_consen 196 KGPRRMFDLHEKILKP-AGFKTIMEGIERSPAK-IS-IKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMA 272 (355)
T ss_dssp G-HHHHHHHHHHTTTT-TT-EEEEE---SSTHH-HH-HHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHH
T ss_pred cCcHHHhhhHHHhcCC-cchhHHhhhhhcCCce-ee-eecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHh
Confidence 9999999988887665 7888888884333221 11 2222222 55666666555 4444
Q ss_pred ccceEEeccC------CCcchHHHHHHHHcCC-cEEeeCCCC-ccc------cccCCcEEec---CCHHHHHHHHHHHHh
Q 007215 435 GYKVFINPSI------SDVLCTATAEALAMGK-FVICADHPS-NEF------FRSFPNCLTY---KTSEDFVARVKEALA 497 (612)
Q Consensus 435 ~aDv~V~PS~------~E~fgl~llEAMA~G~-PVVas~~gg-~~~------i~~~~~g~l~---~d~~~la~aI~~ll~ 497 (612)
.+-..+.-+. .+.+-.+-+|..|||+ ||.-...|. +.+ +.+.+.|.++ +|.++-.+.|.++.+
T Consensus 273 ks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E~a~ 352 (355)
T PF11440_consen 273 KSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIEVAN 352 (355)
T ss_dssp TEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHHHHT
T ss_pred hccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHHHHHhc
Confidence 4433333222 2456778999999999 555444543 332 2222334444 778888888888763
No 165
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=86.07 E-value=34 Score=36.75 Aligned_cols=217 Identities=14% Similarity=0.033 Sum_probs=108.3
Q ss_pred HHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhccCC-CcEEEeCCCCCCCCCCC
Q 007215 271 RWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPK-SVICNVHGVNPKFLQIG 348 (612)
Q Consensus 271 ~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~~~~-~~i~vinGVd~~~f~~~ 348 (612)
..++..+ |++.+-|+.-+- .....+.+-+...+ .|..+++--+...++-+ -++..+-+-|+.|.-+.
T Consensus 118 ~la~l~~kp~~~~g~svGP~----------~~~~s~~~~~~~~~-~~s~i~vRD~~S~~llk~~gi~a~l~~D~Af~L~~ 186 (385)
T COG2327 118 LLARLAGKPTFFFGQSVGPL----------KHPLSRQLLNYVLG-GCSAISVRDPVSYELLKQLGINARLVTDPAFLLPA 186 (385)
T ss_pred HHHHHcCCCEEEEeccCCCc----------cCHHHHHHHHHHhc-CCcEEEEecHHhHHHHHHcCCCeEeecCcceeccc
Confidence 4445455 888777765322 22233333333333 35555554444444222 22222212266665432
Q ss_pred ccchhhhhhccCCCCcEEEEEeccCCc--c------CHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc-
Q 007215 349 EKVATDREQGQQAFSKGAYFLGKMVWA--K------GYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN- 419 (612)
Q Consensus 349 ~~~~~~~~~~~~~~~~~il~vGrl~~~--K------g~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~- 419 (612)
.........+..+.+.+.+.+-.+.+. + .+..+++-+.........++++-.+..++..-.+.++......
T Consensus 187 ~~~~~~~~~~~~~~~~~~i~lr~~~~~~t~~~~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~ 266 (385)
T COG2327 187 SSQNATASDVEAREKTVAITLRGLHPDNTAQRSILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSA 266 (385)
T ss_pred ccccccccccccccceEEEEecccCCchhhhHHHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCcc
Confidence 211111111122333344444444432 2 2233333333333332334555556555556566655555422
Q ss_pred -eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-cccccc--CCcEEec----CCHHHHH
Q 007215 420 -LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-NEFFRS--FPNCLTY----KTSEDFV 489 (612)
Q Consensus 420 -v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~~~i~~--~~~g~l~----~d~~~la 489 (612)
+.+.......+ ..++++|++|-.-++ +++=||+.|+|+|+-..-. .+.+.+ +-.++.. .|.+.+.
T Consensus 267 ~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~ 341 (385)
T COG2327 267 EILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILS 341 (385)
T ss_pred ceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCCchHHHH
Confidence 44433322222 678889998876554 6788999999999997764 322222 2222322 6788899
Q ss_pred HHHHHHHhCCCCCC
Q 007215 490 ARVKEALANDPQPL 503 (612)
Q Consensus 490 ~aI~~ll~~~~~~~ 503 (612)
++..+.+.+.++.+
T Consensus 342 ~~~~e~~~~~~~~~ 355 (385)
T COG2327 342 AVVLERLTKLDELR 355 (385)
T ss_pred HHHHHHHhccHHHH
Confidence 98888886655543
No 166
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=84.81 E-value=4.8 Score=40.10 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=55.8
Q ss_pred CcEEEEEeccCCccCHHH--HHHHHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCc-eEEecCCCCHH--HHHhc
Q 007215 363 SKGAYFLGKMVWAKGYRE--LIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLN-LNFQKGRDHAD--DSLHG 435 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg~~~--Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~-v~f~g~~~~~~--~ll~~ 435 (612)
..+++..|.-.+.|.+.. ..+.+..+.+.. ..++++|+..+ .+...+..+..... +.+.|..+=.+ .+++.
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 345567777667776544 777777776653 77888887766 23334444443322 56666554333 89999
Q ss_pred cceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 436 YKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 436 aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
||++|-+- +. .+==|.|.|+|+|+-=
T Consensus 184 a~~~I~~D---tg--~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 184 ADLVIGND---TG--PMHLAAALGTPTVALF 209 (247)
T ss_dssp SSEEEEES---SH--HHHHHHHTT--EEEEE
T ss_pred CCEEEecC---Ch--HHHHHHHHhCCEEEEe
Confidence 99999884 23 3455788999999983
No 167
>PLN02210 UDP-glucosyl transferase
Probab=84.79 E-value=11 Score=41.69 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=69.6
Q ss_pred cEEEEEeccCC--ccCHHHHHHHHHHhhccCCCeEEEEEecCC---CHHHHHHHHHHcCCceEEecCCCCHHHHHhccce
Q 007215 364 KGAYFLGKMVW--AKGYRELIDLLAKHKNDLDGFKLDVFGNGE---DAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKV 438 (612)
Q Consensus 364 ~~il~vGrl~~--~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~---~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv 438 (612)
.+.+..|.... .+-+..+..+++.. ...+ +.+++... +...+.+... ..+..+.++.++.+ +|+.+++
T Consensus 271 vvyvsfGS~~~~~~~~~~e~a~~l~~~---~~~f-lw~~~~~~~~~~~~~~~~~~~--~~~g~v~~w~PQ~~-iL~h~~v 343 (456)
T PLN02210 271 VVYISFGSMLESLENQVETIAKALKNR---GVPF-LWVIRPKEKAQNVQVLQEMVK--EGQGVVLEWSPQEK-ILSHMAI 343 (456)
T ss_pred eEEEEecccccCCHHHHHHHHHHHHhC---CCCE-EEEEeCCccccchhhHHhhcc--CCCeEEEecCCHHH-HhcCcCc
Confidence 34456777543 23344555555443 1223 33344221 2223333321 11233457666655 8888874
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c----ccccc-CCcEEec--------CCHHHHHHHHHHHHhC
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICADHPS-N----EFFRS-FPNCLTY--------KTSEDFVARVKEALAN 498 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~----~~i~~-~~~g~l~--------~d~~~la~aI~~ll~~ 498 (612)
-.+-+. +--++++||+++|+|+|+-+..+ . ..+.+ -..|..+ -+.+++++++++++.+
T Consensus 344 g~FitH--~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~ 415 (456)
T PLN02210 344 SCFVTH--CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEG 415 (456)
T ss_pred CeEEee--CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcC
Confidence 333332 22348899999999999997764 2 23333 2455443 2678999999999943
No 168
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=84.50 E-value=13 Score=41.52 Aligned_cols=146 Identities=25% Similarity=0.252 Sum_probs=92.5
Q ss_pred cEEEEEeccC-CccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEE
Q 007215 364 KGAYFLGKMV-WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFI 440 (612)
Q Consensus 364 ~~il~vGrl~-~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V 440 (612)
+..+-.|+-. -.||-+..++++.+.. .++-.|.+.......+... |+=+|.....+ ++++.+.|||
T Consensus 278 ~~AlVyGK~~~~w~~k~~~l~~l~~~~----eih~tV~~~~~~~~~~P~~-------V~NHG~l~~~ef~~lL~~akvfi 346 (559)
T PF15024_consen 278 NQALVYGKERYMWKGKEKYLDVLHKYM----EIHGTVYDEPQRPPNVPSF-------VKNHGILSGDEFQQLLRKAKVFI 346 (559)
T ss_pred ceeEEEccchhhhcCcHHHHHHHHhhc----EEEEEeccCCCCCcccchh-------hhhcCcCCHHHHHHHHHhhhEee
Confidence 4556667633 3567788888886642 4555555543322223222 33356666666 9999999998
Q ss_pred eccC-CCcchHHHHHHHHcCCcEEeeCCC---C---c-------------------cccccCCcEEec--CCHHHHHHHH
Q 007215 441 NPSI-SDVLCTATAEALAMGKFVICADHP---S---N-------------------EFFRSFPNCLTY--KTSEDFVARV 492 (612)
Q Consensus 441 ~PS~-~E~fgl~llEAMA~G~PVVas~~g---g---~-------------------~~i~~~~~g~l~--~d~~~la~aI 492 (612)
=... +| |=+.+||+|.|+|-|-.... + . +..++.+..+.+ +|.+++-+||
T Consensus 347 GlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Av 424 (559)
T PF15024_consen 347 GLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAV 424 (559)
T ss_pred ecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHH
Confidence 5432 34 33689999999998877531 1 0 113334445555 8999999999
Q ss_pred HHHHhCCCCCCCHHHHhcCCHHHHHHHHHHHHh
Q 007215 493 KEALANDPQPLTPEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 493 ~~ll~~~~~~~~~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+++++++.+ ...-..|+=+.+.+|.-.+.+
T Consensus 425 k~il~~~v~---Py~P~efT~egmLeRv~~~ie 454 (559)
T PF15024_consen 425 KAILATPVE---PYLPYEFTCEGMLERVNALIE 454 (559)
T ss_pred HHHHhcCCC---CcCCcccCHHHHHHHHHHHHH
Confidence 999977543 334455777777777766665
No 169
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=84.25 E-value=16 Score=38.00 Aligned_cols=125 Identities=13% Similarity=0.041 Sum_probs=71.7
Q ss_pred cEEEEEeccCCccCH--HHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHH--HHHhccce
Q 007215 364 KGAYFLGKMVWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKV 438 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~--~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv 438 (612)
.+++..|.-.+.|.. +...+.++.+.++ +..+++.|+++++ +..+++.+..+ ...+.|..+=.+ .+++.||+
T Consensus 181 ~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 181 YAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALP-GAVVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred EEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCC-CCeecCCCCHHHHHHHHHcCCE
Confidence 455667754556654 4666666666543 5777877555544 44455544433 234556554333 99999999
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeCCCCcc-cccc-CCc-EEec------CCHHHHHHHHHHHH
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICADHPSNE-FFRS-FPN-CLTY------KTSEDFVARVKEAL 496 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~-~i~~-~~~-g~l~------~d~~~la~aI~~ll 496 (612)
+|-.- +.+ +==|.|+|+|+|+-=.+..+ .... +.+ ..+. =++++..+++.++|
T Consensus 258 ~I~~D---Sgp--~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 258 VVGVD---TGL--THLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EEeCC---ChH--HHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 99874 333 34466889999987433322 1111 111 1111 46777777777654
No 170
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=82.78 E-value=5.6 Score=41.99 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=65.6
Q ss_pred cEEEEEe-ccCCccCHH--HHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccce
Q 007215 364 KGAYFLG-KMVWAKGYR--ELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKV 438 (612)
Q Consensus 364 ~~il~vG-rl~~~Kg~~--~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv 438 (612)
.+++..| .-...|... ...+.++.+.++. .++++.|+..+.+..+++.+.+...+.+.|..+-.+ .+++.||+
T Consensus 177 ~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 177 YIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred eEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 3445666 444556543 5566666666654 789999988666777777777664444666655555 89999999
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+|-+.. . .+-=|.|.|+|+|+--
T Consensus 255 ~I~~DS---g--~~HlAaA~~~P~I~iy 277 (334)
T COG0859 255 VIGNDS---G--PMHLAAALGTPTIALY 277 (334)
T ss_pred EEccCC---h--HHHHHHHcCCCEEEEE
Confidence 988753 2 3455789999999974
No 171
>PLN02167 UDP-glycosyltransferase family protein
Probab=82.47 E-value=8.5 Score=42.81 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=69.0
Q ss_pred cEEEEEeccC--CccCHHHHHHHHHHhhccCCCeEEEEEecCCC---------HHHHHHHHHHcCCceEEecCCCCHHHH
Q 007215 364 KGAYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNGED---------AYEVQSAAKRLDLNLNFQKGRDHADDS 432 (612)
Q Consensus 364 ~~il~vGrl~--~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~---------~~~l~~~~~~l~l~v~f~g~~~~~~~l 432 (612)
.+.+..|.+. ..+.+..++.+++.... .+ +.+++.... .+.+.+.++. .+.+.++.++.+ +
T Consensus 282 vvyvsfGS~~~~~~~~~~ela~~l~~~~~---~f-lw~~~~~~~~~~~~~~~lp~~~~er~~~---rg~v~~w~PQ~~-i 353 (475)
T PLN02167 282 VVFLCFGSLGSLPAPQIKEIAQALELVGC---RF-LWSIRTNPAEYASPYEPLPEGFMDRVMG---RGLVCGWAPQVE-I 353 (475)
T ss_pred eEEEeecccccCCHHHHHHHHHHHHhCCC---cE-EEEEecCcccccchhhhCChHHHHHhcc---CeeeeccCCHHH-H
Confidence 3445677753 34557777777766532 22 334442111 0122222221 244567765554 7
Q ss_pred Hhccc--eEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----cc-cccc-CCcEEec-----------CCHHHHHHHHH
Q 007215 433 LHGYK--VFINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRS-FPNCLTY-----------KTSEDFVARVK 493 (612)
Q Consensus 433 l~~aD--v~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~~-~i~~-~~~g~l~-----------~d~~~la~aI~ 493 (612)
|+... .||.= +--++++||+++|+|+|+-...+ +. .++. -..|..+ -+.++++++|.
T Consensus 354 L~h~~vg~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~ 429 (475)
T PLN02167 354 LAHKAIGGFVSH----CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVR 429 (475)
T ss_pred hcCcccCeEEee----CCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHH
Confidence 87754 45432 22348999999999999987654 22 2222 2334432 26789999999
Q ss_pred HHHhC
Q 007215 494 EALAN 498 (612)
Q Consensus 494 ~ll~~ 498 (612)
+++.+
T Consensus 430 ~~m~~ 434 (475)
T PLN02167 430 SLMDG 434 (475)
T ss_pred HHhcC
Confidence 99954
No 172
>PLN02670 transferase, transferring glycosyl groups
Probab=82.15 E-value=11 Score=41.92 Aligned_cols=125 Identities=18% Similarity=0.059 Sum_probs=72.5
Q ss_pred EEEEEeccC--CccCHHHHHHHHHHhhccCCCeEEEEEecCCC--H-------HHHHHHHHHcCCceEEecCCCCHHHHH
Q 007215 365 GAYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--A-------YEVQSAAKRLDLNLNFQKGRDHADDSL 433 (612)
Q Consensus 365 ~il~vGrl~--~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~-------~~l~~~~~~l~l~v~f~g~~~~~~~ll 433 (612)
+.+.+|.+. ..+.+..|..+++.... .+ +.++..... . +.+.+.++..| +.+.++.++.+ +|
T Consensus 281 vyvsfGS~~~l~~~q~~ela~gl~~s~~---~F-lWv~r~~~~~~~~~~~~lp~~f~~~~~~rG--~vv~~W~PQ~~-IL 353 (472)
T PLN02670 281 VYVALGTEASLRREEVTELALGLEKSET---PF-FWVLRNEPGTTQNALEMLPDGFEERVKGRG--MIHVGWVPQVK-IL 353 (472)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHCCC---CE-EEEEcCCcccccchhhcCChHHHHhccCCC--eEEeCcCCHHH-Hh
Confidence 345567653 34566667777766532 23 222321111 0 12222232222 55567877665 88
Q ss_pred hccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-cccccCCcEEec--------CCHHHHHHHHHHHHhC
Q 007215 434 HGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRSFPNCLTY--------KTSEDFVARVKEALAN 498 (612)
Q Consensus 434 ~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~~~~g~l~--------~d~~~la~aI~~ll~~ 498 (612)
+..++-.+-+. +--++++||+++|+|+|+....+ + ..+.....|..+ -+.++++++|.+++.+
T Consensus 354 ~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~ 429 (472)
T PLN02670 354 SHESVGGFLTH--CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVD 429 (472)
T ss_pred cCcccceeeec--CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcC
Confidence 77776444432 33468999999999999997654 2 233333455544 2579999999999944
No 173
>PLN02554 UDP-glycosyltransferase family protein
Probab=81.54 E-value=10 Score=42.33 Aligned_cols=76 Identities=9% Similarity=-0.092 Sum_probs=47.2
Q ss_pred ceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----cc-ccc-cCCcEEec----------
Q 007215 419 NLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFR-SFPNCLTY---------- 482 (612)
Q Consensus 419 ~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~~-~i~-~~~~g~l~---------- 482 (612)
++.+.++.++.+ +|+...+-.+-+ -+--.+++||+.+|+|+|+-...+ +. .++ .-..|..+
T Consensus 343 ~g~v~~W~PQ~~-iL~H~~v~~Fvt--H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~ 419 (481)
T PLN02554 343 IGKVIGWAPQVA-VLAKPAIGGFVT--HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLA 419 (481)
T ss_pred CceEEeeCCHHH-HhCCcccCcccc--cCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccc
Confidence 355567766554 775444322222 233458999999999999987654 22 222 22333322
Q ss_pred -----CCHHHHHHHHHHHHh
Q 007215 483 -----KTSEDFVARVKEALA 497 (612)
Q Consensus 483 -----~d~~~la~aI~~ll~ 497 (612)
-+.++++++|.+++.
T Consensus 420 ~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 420 GEMETVTAEEIERGIRCLME 439 (481)
T ss_pred cccCeEcHHHHHHHHHHHhc
Confidence 267899999999994
No 174
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=81.10 E-value=2.2 Score=40.50 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=50.1
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC--CEEEEEeC----CcHhHH-HHhccchhHHHHH---HHHHHHHHHhcCCe
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHT----NYLEYI-KREKNGALQAFFV---KHINNWVTRAYCDK 318 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~--pvv~~~H~----~~~~~~-~~~~~~~~~~~~~---~~i~~~~~~~~ad~ 318 (612)
.+.||||+.|. +|-. ++..+.-+. |+++.+-- ...+.. ..+.......... +.+..++.-..||.
T Consensus 64 Gf~PDvI~~H~----GWGe-~Lflkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~ 138 (171)
T PF12000_consen 64 GFVPDVIIAHP----GWGE-TLFLKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADA 138 (171)
T ss_pred CCCCCEEEEcC----Ccch-hhhHHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCc
Confidence 36799999974 4433 233444553 66654422 111100 0000111122222 33333444445999
Q ss_pred EEEeChhhhc-cC---CCcEEEeC-CCCCCCC
Q 007215 319 VLRLSAATQD-LP---KSVICNVH-GVNPKFL 345 (612)
Q Consensus 319 vI~~S~~~~~-~~---~~~i~vin-GVd~~~f 345 (612)
.|+.|+.-++ +| +++|.|++ |||++++
T Consensus 139 ~isPT~wQ~~~fP~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 139 GISPTRWQRSQFPAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred CcCCCHHHHHhCCHHHHcCcEEeecccchhhc
Confidence 9999998766 44 38899995 9998865
No 175
>PLN02534 UDP-glycosyltransferase
Probab=80.93 E-value=20 Score=40.06 Aligned_cols=75 Identities=11% Similarity=-0.038 Sum_probs=49.0
Q ss_pred eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccccC-CcEEe------------
Q 007215 420 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRSF-PNCLT------------ 481 (612)
Q Consensus 420 v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~~~-~~g~l------------ 481 (612)
+.+.++.++.+ ++...++-.+-+ -+-.++++||+++|+|+|+-...+- ..+.+. ..|+-
T Consensus 346 ~~v~~w~pq~~-iL~h~~v~~fvt--H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~ 422 (491)
T PLN02534 346 LLIKGWAPQVL-ILSHPAIGGFLT--HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDE 422 (491)
T ss_pred eeccCCCCHHH-HhcCCccceEEe--cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccccccc
Confidence 55567777654 888887633332 2445689999999999999977541 112211 11111
Q ss_pred -----cCCHHHHHHHHHHHHh
Q 007215 482 -----YKTSEDFVARVKEALA 497 (612)
Q Consensus 482 -----~~d~~~la~aI~~ll~ 497 (612)
+-+.++++++|++++.
T Consensus 423 ~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 423 ERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccCccCHHHHHHHHHHHhc
Confidence 1367899999999994
No 176
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=80.90 E-value=15 Score=41.02 Aligned_cols=76 Identities=12% Similarity=0.010 Sum_probs=51.7
Q ss_pred eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c---c-ccc-cCCcEEec------CCHHH
Q 007215 420 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-N---E-FFR-SFPNCLTY------KTSED 487 (612)
Q Consensus 420 v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~---~-~i~-~~~~g~l~------~d~~~ 487 (612)
+.+.++.++.+ ++....+-.+-+ -+--++++||+.+|+|+|+-+..+ . . .+. .-..|... -+.++
T Consensus 340 ~vv~~W~PQ~~-iL~h~~vg~Fit--H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~ 416 (481)
T PLN02992 340 FVVPSWAPQAE-ILAHQAVGGFLT--HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSK 416 (481)
T ss_pred EEEeecCCHHH-HhCCcccCeeEe--cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHH
Confidence 66678877665 888777633332 234468999999999999998764 1 2 332 22344433 26789
Q ss_pred HHHHHHHHHhC
Q 007215 488 FVARVKEALAN 498 (612)
Q Consensus 488 la~aI~~ll~~ 498 (612)
++++|.+++.+
T Consensus 417 l~~av~~vm~~ 427 (481)
T PLN02992 417 IEALVRKVMVE 427 (481)
T ss_pred HHHHHHHHhcC
Confidence 99999999954
No 177
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.00 E-value=61 Score=36.79 Aligned_cols=141 Identities=12% Similarity=0.050 Sum_probs=86.2
Q ss_pred hhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecC-CCHHHHHHHHHHcCCc---eEEecCCCC
Q 007215 353 TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNG-EDAYEVQSAAKRLDLN---LNFQKGRDH 428 (612)
Q Consensus 353 ~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g-~~~~~l~~~~~~l~l~---v~f~g~~~~ 428 (612)
.+..++++++..++..+.. -.|=-...++.+.++.++.|+-.|.+.--. -.+..++..+.++|++ |.|..-...
T Consensus 749 ~r~~y~Lp~d~vvf~~FNq--LyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k 826 (966)
T KOG4626|consen 749 TRSQYGLPEDAVVFCNFNQ--LYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAK 826 (966)
T ss_pred CCCCCCCCCCeEEEeechh--hhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccch
Confidence 4566777776433332222 234445678888888888898767665421 1136788889999997 777555444
Q ss_pred HH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCcc------ccccCCcE-EecCCHHHHHHHHHHHH
Q 007215 429 AD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE------FFRSFPNC-LTYKTSEDFVARVKEAL 496 (612)
Q Consensus 429 ~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~------~i~~~~~g-~l~~d~~~la~aI~~ll 496 (612)
.+ .-.+.+||++-+....|- ++-+|.+.+|+|+|+-...... .+..-..| ++..+-++..+.-.++-
T Consensus 827 ~eHvrr~~LaDv~LDTplcnGh-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~La 902 (966)
T KOG4626|consen 827 EEHVRRGQLADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLA 902 (966)
T ss_pred HHHHHhhhhhhhcccCcCcCCc-ccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhh
Confidence 44 445556988877665443 4568999999999987543211 11111112 23377777766655555
No 178
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=79.10 E-value=69 Score=34.65 Aligned_cols=110 Identities=10% Similarity=0.144 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHHH-hhcc-----CCCeEEEEEecC---CCHHHHHHHHHHcCCce-EEecCCCCHHHHHhcc--ceEEe
Q 007215 374 WAKGYRELIDLLAK-HKND-----LDGFKLDVFGNG---EDAYEVQSAAKRLDLNL-NFQKGRDHADDSLHGY--KVFIN 441 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~-l~~~-----~~~~~LvIvG~g---~~~~~l~~~~~~l~l~v-~f~g~~~~~~~ll~~a--Dv~V~ 441 (612)
...|.+..++++-+ +... ..+-.+.|+|.- .+..+++++.++.|+++ .+++.-...+++-+.. .+-|.
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv 213 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLV 213 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEE
Confidence 45678878877643 3221 123457777763 24588999999999984 4455555666555554 44443
Q ss_pred ccCCCcchHHHHHHHH--cCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHh
Q 007215 442 PSISDVLCTATAEALA--MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 442 PS~~E~fgl~llEAMA--~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~ 497 (612)
.+. .++..+.+.|. .|+|.+...--| ..+.+++-+.|.+++.
T Consensus 214 ~~~--~~~~~~a~~L~~r~GiP~~~~~p~G------------~~~t~~~l~~l~~~lg 257 (406)
T cd01967 214 HCS--RSMNYLAREMEERYGIPYMEVNFYG------------FEDTSESLRKIAKFFG 257 (406)
T ss_pred ECh--HHHHHHHHHHHHhhCCCEEEecCCc------------HHHHHHHHHHHHHHhC
Confidence 332 34555555553 799997531101 1356677777777773
No 179
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=78.93 E-value=25 Score=39.16 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=68.3
Q ss_pred EEEEEeccCC--ccCHHHHHHHHHHhhccCCCeEEEEEecCCC----H----HHHHHHHHHcCCceEEecCCCCHHHHHh
Q 007215 365 GAYFLGKMVW--AKGYRELIDLLAKHKNDLDGFKLDVFGNGED----A----YEVQSAAKRLDLNLNFQKGRDHADDSLH 434 (612)
Q Consensus 365 ~il~vGrl~~--~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~----~----~~l~~~~~~l~l~v~f~g~~~~~~~ll~ 434 (612)
+.+..|.+.. .+.+..++++++.... .+ +..++...+ . +.+.+.++.. .+.+.++.++.+ +|.
T Consensus 286 VyvsfGS~~~~~~~~~~ela~gL~~~~~---~f-lw~~~~~~~~~~~~~~lp~~~~~r~~~~--g~~v~~w~PQ~~-vL~ 358 (477)
T PLN02863 286 VYVCFGSQVVLTKEQMEALASGLEKSGV---HF-IWCVKEPVNEESDYSNIPSGFEDRVAGR--GLVIRGWAPQVA-ILS 358 (477)
T ss_pred EEEEeeceecCCHHHHHHHHHHHHhCCC---cE-EEEECCCcccccchhhCCHHHHHHhccC--CEEecCCCCHHH-Hhc
Confidence 4456676532 2346666666665421 23 344442211 0 1222222211 256668887655 777
Q ss_pred cc--ceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----cc-ccccC-CcEEec-------CCHHHHHHHHHHHH
Q 007215 435 GY--KVFINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRSF-PNCLTY-------KTSEDFVARVKEAL 496 (612)
Q Consensus 435 ~a--Dv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~~-~i~~~-~~g~l~-------~d~~~la~aI~~ll 496 (612)
.. ++||.- +--.+++||+++|+|+|+-...+ +. .+.+. ..|..+ -+.+++++++.+++
T Consensus 359 h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m 431 (477)
T PLN02863 359 HRAVGAFLTH----CGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESV 431 (477)
T ss_pred CCCcCeEEec----CCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHh
Confidence 64 555432 34458999999999999987654 22 23332 344433 26789999999988
No 180
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=78.64 E-value=14 Score=34.85 Aligned_cols=81 Identities=25% Similarity=0.174 Sum_probs=49.9
Q ss_pred Hhhhcc-CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEE
Q 007215 243 TSQFIP-SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVL 320 (612)
Q Consensus 243 l~~~l~-~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI 320 (612)
+.+.+. ...+|+|++.+-..+.-+. .......+ |.+..+|.|-..|...... ..-+...+..+.....||.|+
T Consensus 50 ~a~~~~~~~~~dll~aTsmldLa~l~--gL~p~l~~~p~ilYFHENQl~YP~~~~~---~rd~~~~~~ni~saLaAD~v~ 124 (168)
T PF12038_consen 50 FAQQIPLSHSYDLLFATSMLDLATLR--GLRPDLANVPKILYFHENQLAYPVSPGQ---ERDFQYGMNNIYSALAADRVV 124 (168)
T ss_pred HhhccccccCCCEEEeeccccHHHHH--hhccCCCCCCEEEEEecCcccCCCCCCc---cccccHHHHHHHHHHhceeee
Confidence 334343 5678999997765554443 12223334 9999999998777533222 122334455555666789999
Q ss_pred EeChhhhc
Q 007215 321 RLSAATQD 328 (612)
Q Consensus 321 ~~S~~~~~ 328 (612)
..|+.-++
T Consensus 125 FNS~~nr~ 132 (168)
T PF12038_consen 125 FNSAFNRD 132 (168)
T ss_pred ecchhhHH
Confidence 99996554
No 181
>PLN02555 limonoid glucosyltransferase
Probab=76.98 E-value=28 Score=38.80 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=48.9
Q ss_pred ceEEecCCCCHHHHHhcc--ceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-cccccC-CcEEec--------
Q 007215 419 NLNFQKGRDHADDSLHGY--KVFINPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRSF-PNCLTY-------- 482 (612)
Q Consensus 419 ~v~f~g~~~~~~~ll~~a--Dv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~~-~~g~l~-------- 482 (612)
++.+.++.++.+ +|+.- .+||.- +--.+++||+++|+|+|+...-+ + ..+.+. ..|+.+
T Consensus 338 ~g~v~~W~PQ~~-iL~H~~v~~FvtH----~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~ 412 (480)
T PLN02555 338 KGKIVQWCPQEK-VLAHPSVACFVTH----CGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENK 412 (480)
T ss_pred ceEEEecCCHHH-HhCCCccCeEEec----CCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccC
Confidence 356667776554 77443 455432 33468999999999999997654 1 223332 344433
Q ss_pred -CCHHHHHHHHHHHHhC
Q 007215 483 -KTSEDFVARVKEALAN 498 (612)
Q Consensus 483 -~d~~~la~aI~~ll~~ 498 (612)
-+.++++++|++++.+
T Consensus 413 ~v~~~~v~~~v~~vm~~ 429 (480)
T PLN02555 413 LITREEVAECLLEATVG 429 (480)
T ss_pred cCcHHHHHHHHHHHhcC
Confidence 2578999999999943
No 182
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=76.62 E-value=25 Score=38.87 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=72.8
Q ss_pred EEEEEeccC--CccCHHHHHHHHHHhhccCCCeEEEEEecC---------CCHHH---HHHHHHHcCCceEEecCCCCHH
Q 007215 365 GAYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNG---------EDAYE---VQSAAKRLDLNLNFQKGRDHAD 430 (612)
Q Consensus 365 ~il~vGrl~--~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g---------~~~~~---l~~~~~~l~l~v~f~g~~~~~~ 430 (612)
+.+.+|.+. +.+.++.+..+++.... .+ +.++... .+... .....++..-++.+.++.++.
T Consensus 264 vyvsfGS~~~l~~~q~~ela~gL~~s~~---~f-lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~- 338 (455)
T PLN02152 264 IYVSFGTMVELSKKQIEELARALIEGKR---PF-LWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQI- 338 (455)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHcCC---Ce-EEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHH-
Confidence 345667643 45677777788877643 23 3334321 11001 122222233335566777644
Q ss_pred HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c----cccccC-CcEEec-------CCHHHHHHHHHHHHh
Q 007215 431 DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-N----EFFRSF-PNCLTY-------KTSEDFVARVKEALA 497 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~----~~i~~~-~~g~l~-------~d~~~la~aI~~ll~ 497 (612)
++|+..++-.+-+. +-.++++||+.+|+|+|+-+..+ . ..+.+. ..|.-+ -+.++++++|.+++.
T Consensus 339 ~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~ 416 (455)
T PLN02152 339 EVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVME 416 (455)
T ss_pred HHhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHh
Confidence 48888876544443 33458999999999999997654 1 122221 123222 367999999999994
No 183
>PRK13744 conjugal transfer protein TrbG; Provisional
Probab=76.58 E-value=1.1 Score=34.40 Aligned_cols=16 Identities=63% Similarity=1.030 Sum_probs=13.9
Q ss_pred eeecccCCCChhhhhh
Q 007215 25 LVLNEVGIQPPLCEMW 40 (612)
Q Consensus 25 ~~~~~~~~~~~~~~~~ 40 (612)
-||-|-||.|||||.-
T Consensus 16 pvlyesgitpplcevs 31 (83)
T PRK13744 16 PVLYESGITPPLCEVS 31 (83)
T ss_pred cEeeecCCCCcccccc
Confidence 4788999999999974
No 184
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=74.90 E-value=6.9 Score=36.80 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=40.6
Q ss_pred HhHhhhccCCCccEEEECCCchhHH-hhhhHHHhhhC-C-CEEEEEeCCcH-hHHHHhccchhHHHHHHHHHHHHHHhcC
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNW-YHHGKRWTDKF-N-HVVGVVHTNYL-EYIKREKNGALQAFFVKHINNWVTRAYC 316 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~-~~~~~~~~~~~-~-pvv~~~H~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~a 316 (612)
..+.+.|.+.+||+|++..|..... .. .++..... + |++ ++-|++. -.. . | ..-.+
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~-~lk~~~~~~~~p~~-tvvTD~~~~H~---------~--------W-~~~~~ 138 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLS-RLKRRGRLPNIPVV-TVVTDFDTVHP---------F--------W-IHPGV 138 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHH-HHHHhhcccCCcEE-EEEcCCCCCCc---------C--------e-ecCCC
Confidence 4677888899999999988875444 32 12333334 4 555 4444431 111 0 1 11147
Q ss_pred CeEEEeChhhhc
Q 007215 317 DKVLRLSAATQD 328 (612)
Q Consensus 317 d~vI~~S~~~~~ 328 (612)
|..++.|+.+++
T Consensus 139 D~y~Vase~~~~ 150 (169)
T PF06925_consen 139 DRYFVASEEVKE 150 (169)
T ss_pred CEEEECCHHHHH
Confidence 999999998765
No 185
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=74.64 E-value=18 Score=37.73 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=55.3
Q ss_pred EEEeccCCccC--HHHHHHHHHHhhccCCCeEEEEE-ecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEe
Q 007215 367 YFLGKMVWAKG--YRELIDLLAKHKNDLDGFKLDVF-GNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFIN 441 (612)
Q Consensus 367 l~vGrl~~~Kg--~~~Li~A~~~l~~~~~~~~LvIv-G~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~ 441 (612)
+..|.-.+.|. .+...+.+..+.++ +.++++. |+..+.+..+++++.. -.+.+.|..+=.+ .+++.||++|-
T Consensus 183 ~~~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~~-~~~~l~g~~sL~elaali~~a~l~I~ 259 (322)
T PRK10964 183 FLHATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEGF-PYVEVLPKLSLEQVARVLAGAKAVVS 259 (322)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHccC-CcceecCCCCHHHHHHHHHhCCEEEe
Confidence 34444334443 33566666666543 5677776 5433444444444332 1255666655334 99999999998
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 442 PSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
... - .+-=|.|+|+|+|+-=.+
T Consensus 260 nDS---G--p~HlA~A~g~p~valfGp 281 (322)
T PRK10964 260 VDT---G--LSHLTAALDRPNITLYGP 281 (322)
T ss_pred cCC---c--HHHHHHHhCCCEEEEECC
Confidence 742 2 445578999999987433
No 186
>PLN02207 UDP-glycosyltransferase
Probab=73.92 E-value=39 Score=37.50 Aligned_cols=127 Identities=12% Similarity=-0.014 Sum_probs=70.1
Q ss_pred cEEEEEeccC--CccCHHHHHHHHHHhhccCCCeEEEEEecCCC--HHHH-HHHHHHcCCceEEecCCCCHHHHHhccce
Q 007215 364 KGAYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEV-QSAAKRLDLNLNFQKGRDHADDSLHGYKV 438 (612)
Q Consensus 364 ~~il~vGrl~--~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l-~~~~~~l~l~v~f~g~~~~~~~ll~~aDv 438 (612)
.+.+..|... ..+.++.+..++..... .+ +..+..... .+.+ ....++...++.+.++.++.+ +|+...+
T Consensus 277 VVyvSfGS~~~~~~~q~~ela~~l~~~~~---~f-lW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~-IL~H~~v 351 (468)
T PLN02207 277 VVFLCFGSMGRLRGPLVKEIAHGLELCQY---RF-LWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVE-ILAHKAV 351 (468)
T ss_pred EEEEEeccCcCCCHHHHHHHHHHHHHCCC---cE-EEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHH-Hhccccc
Confidence 3445667643 33456677777766532 23 334442111 1101 111122222355567776665 7777665
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeCCCC----cc-cccc-CCcEEe-----------cCCHHHHHHHHHHHHh
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRS-FPNCLT-----------YKTSEDFVARVKEALA 497 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~~-~i~~-~~~g~l-----------~~d~~~la~aI~~ll~ 497 (612)
-.+-+. +--++++||+++|+|+|+-...+ +. .+++ -..|+- .-+.++++++|++++.
T Consensus 352 g~FvTH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 352 GGFVSH--CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ceeeec--CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 333332 22347899999999999997664 22 2333 233431 1367899999999994
No 187
>PLN03015 UDP-glucosyl transferase
Probab=72.24 E-value=57 Score=36.25 Aligned_cols=75 Identities=13% Similarity=0.049 Sum_probs=47.7
Q ss_pred eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----cc-cccc-CCcEEec--------CCH
Q 007215 420 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRS-FPNCLTY--------KTS 485 (612)
Q Consensus 420 v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~~-~i~~-~~~g~l~--------~d~ 485 (612)
+.+.++.++.+ +|+...+-.+-+. +--++++||+++|+|+|+-+.-+ +. .+.+ -..|.-+ -+.
T Consensus 337 l~v~~W~PQ~~-vL~h~~vg~fvtH--~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~ 413 (470)
T PLN03015 337 LVVTQWAPQVE-ILSHRSIGGFLSH--CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGR 413 (470)
T ss_pred eEEEecCCHHH-HhccCccCeEEec--CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCH
Confidence 45567777666 6666655333332 23358999999999999997654 11 2212 1233322 366
Q ss_pred HHHHHHHHHHHh
Q 007215 486 EDFVARVKEALA 497 (612)
Q Consensus 486 ~~la~aI~~ll~ 497 (612)
++++++|++++.
T Consensus 414 e~i~~~v~~lm~ 425 (470)
T PLN03015 414 EEVASLVRKIVA 425 (470)
T ss_pred HHHHHHHHHHHc
Confidence 899999999994
No 188
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=71.37 E-value=22 Score=37.71 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=58.6
Q ss_pred CcEEEEEeccCCccCH--HHHHHHHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCC-c-eEEecCCCCHH--HHHh
Q 007215 363 SKGAYFLGKMVWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDL-N-LNFQKGRDHAD--DSLH 434 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg~--~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l-~-v~f~g~~~~~~--~ll~ 434 (612)
+.+++..|.-.+.|.. +...+.++.+.++ ++++++.|+..+ .+..+++++.... . +.+.|..+=.+ .+++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 3455677765555653 3556666666443 577888875432 2333444443322 2 34556554333 9999
Q ss_pred ccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 435 GYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 435 ~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
.||++|-.. +. .+==|.|+|+|+|+-=.+
T Consensus 262 ~a~l~v~nD---SG--p~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 262 HAQLFIGVD---SA--PAHIAAAVNTPLICLFGA 290 (352)
T ss_pred hCCEEEecC---CH--HHHHHHHcCCCEEEEECC
Confidence 999998773 33 334466889999987433
No 189
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=69.53 E-value=32 Score=36.30 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=57.4
Q ss_pred EEEEEecc-CCccCH--HHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc-----eEEecCCCCHH--HHHh
Q 007215 365 GAYFLGKM-VWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-----LNFQKGRDHAD--DSLH 434 (612)
Q Consensus 365 ~il~vGrl-~~~Kg~--~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~-----v~f~g~~~~~~--~ll~ 434 (612)
+++..|.- .+.|.. +...+.++.+.+ .++++++.|+..+.+..++..+..+.. +.+.|..+=.+ .+++
T Consensus 183 i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~ 260 (348)
T PRK10916 183 IGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIA 260 (348)
T ss_pred EEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHH
Confidence 44556553 345543 345555555543 367888999776666566655544321 33445443333 8999
Q ss_pred ccceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 435 GYKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 435 ~aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
.||++|-.-. - .+==|.|.|+|+|+-
T Consensus 261 ~a~l~I~nDT---G--p~HlAaA~g~P~val 286 (348)
T PRK10916 261 ACKAIVTNDS---G--LMHVAAALNRPLVAL 286 (348)
T ss_pred hCCEEEecCC---h--HHHHHHHhCCCEEEE
Confidence 9999987742 2 344578899999976
No 190
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=67.01 E-value=75 Score=33.10 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=76.4
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.=... ..++.+ ..+.|||+-+....+|.. .-...+.+|. -....|.|+|-..+.+=...++.++.
T Consensus 95 y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-l~g~~va~vGD~~~~~v~~Sl~~~~a 173 (301)
T TIGR00670 95 YSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGR-LDGLKIALVGDLKYGRTVHSLAEALT 173 (301)
T ss_pred hCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCCEEEEEccCCCCcHHHHHHHHHH
Confidence 47887775543 222322 567888987755556642 2223344442 22468899996655555778888887
Q ss_pred HhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 387 KHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
.+ ++++.+++.... .+++.+.+++.|..+.+ .++.++.++.|||+...+.
T Consensus 174 ~~-----g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~---~~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 174 RF-----GVEVYLISPEELRMPKEILEELKAKGIKVRE---TESLEEVIDEADVLYVTRI 225 (301)
T ss_pred Hc-----CCEEEEECCccccCCHHHHHHHHHcCCEEEE---ECCHHHHhCCCCEEEECCc
Confidence 76 578999986432 24555556666655543 3667789999998877654
No 191
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=66.10 E-value=47 Score=30.83 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=60.2
Q ss_pred EEEEEeccCCccCHHHHHHHH------HHhhccCCCeEEE-EEecCCCH--HHHHHHHHHcCCceEEecCCCCHHHHHhc
Q 007215 365 GAYFLGKMVWAKGYRELIDLL------AKHKNDLDGFKLD-VFGNGEDA--YEVQSAAKRLDLNLNFQKGRDHADDSLHG 435 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~------~~l~~~~~~~~Lv-IvG~g~~~--~~l~~~~~~l~l~v~f~g~~~~~~~ll~~ 435 (612)
+++.+|.-. ++.||.++ +++.+..- .+|+ =+|.|... +......+..++.+..+.+.+...+.++.
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~-~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLSEEFLQELQKRGF-TKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEecccc----HHHHHHHHcCHHHHHHHHHcCc-cEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 556777643 78888655 33443322 2343 35666211 22333334566678888888888899999
Q ss_pred cceEEeccCCCcchHHHHHHHHcCCcEEeeCC
Q 007215 436 YKVFINPSISDVLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 436 aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~ 467 (612)
||+.|.- +-.-+++|-+..|+|.|+.-+
T Consensus 81 AdlVIsH----AGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 81 ADLVISH----AGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred ccEEEec----CCcchHHHHHHcCCCEEEEeC
Confidence 9998753 334478999999999887633
No 192
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=65.99 E-value=44 Score=35.11 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=57.4
Q ss_pred cEEEEEeccCCccC--HHHHHHHHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCc--eEEecCCCCHH--HHHhc
Q 007215 364 KGAYFLGKMVWAKG--YRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHG 435 (612)
Q Consensus 364 ~~il~vGrl~~~Kg--~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~ 435 (612)
.+++..|.-.+.|. .+...+.++.+.++ +.++++.|+..+ .+..++..+..+.. +.+.|..+=.+ .+++.
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 34456665444443 44555666565543 577888886432 23344444443322 33556554333 99999
Q ss_pred cceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 436 YKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 436 aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
||++|-.. +. .+==|.|+|+|+|+-=
T Consensus 261 a~l~Vs~D---SG--p~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 261 ARLFIGVD---SV--PMHMAAALGTPLVALF 286 (344)
T ss_pred CCEEEecC---CH--HHHHHHHcCCCEEEEE
Confidence 99999873 33 3455788999999873
No 193
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=65.72 E-value=35 Score=32.03 Aligned_cols=68 Identities=12% Similarity=-0.066 Sum_probs=47.8
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCC-CCHHHHHhccceEEecc
Q 007215 375 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGR-DHADDSLHGYKVFINPS 443 (612)
Q Consensus 375 ~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~-~~~~~ll~~aDv~V~PS 443 (612)
.=.+...|+|+..+....-+.-+++-|+ .|...+.+.+++.|..|..+|.. ...+++.++||-|+.-.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD-~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRD-ADFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILG 156 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEecc-HhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCC
Confidence 3467889999988755445664444454 45566666678889888888843 45668999999887643
No 194
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=65.58 E-value=6.4 Score=40.44 Aligned_cols=48 Identities=25% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHhccceEEeccCCCcchHHHHHHHHcCC-cEEeeCCCC--ccccccC
Q 007215 429 ADDSLHGYKVFINPSISDVLCTATAEALAMGK-FVICADHPS--NEFFRSF 476 (612)
Q Consensus 429 ~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~-PVVas~~gg--~~~i~~~ 476 (612)
..+.|+.++.++.|.=...+..-+.|||++|+ |||.++.-- .+++++-
T Consensus 230 ~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw 280 (302)
T PF03016_consen 230 YMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDW 280 (302)
T ss_pred HHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCH
Confidence 34789999999998666567888999999999 888876433 3445553
No 195
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=65.23 E-value=77 Score=31.12 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=51.7
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHH-----HHcCCceEEecCCCCHH---HHHhccceEEeccCCC
Q 007215 375 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAA-----KRLDLNLNFQKGRDHAD---DSLHGYKVFINPSISD 446 (612)
Q Consensus 375 ~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~-----~~l~l~v~f~g~~~~~~---~ll~~aDv~V~PS~~E 446 (612)
..-.+.+.+.+..+.+......++.....+......... ......+.......+.+ ++++.||++|-...+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH- 267 (286)
T PF04230_consen 189 EEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH- 267 (286)
T ss_pred hhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH-
Confidence 344556667777776644444444444433322211111 11111244444444444 899999999988876
Q ss_pred cchHHHHHHHHcCCcEEeeCC
Q 007215 447 VLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 447 ~fgl~llEAMA~G~PVVas~~ 467 (612)
..+=|+++|+|+|+-+.
T Consensus 268 ----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 ----GAILALSLGVPVIAISY 284 (286)
T ss_pred ----HHHHHHHcCCCEEEEec
Confidence 57889999999998653
No 196
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=64.98 E-value=14 Score=35.79 Aligned_cols=99 Identities=14% Similarity=-0.040 Sum_probs=58.7
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHH--HHHhccceEEeccCCCcc
Q 007215 375 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHAD--DSLHGYKVFINPSISDVL 448 (612)
Q Consensus 375 ~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~--~ll~~aDv~V~PS~~E~f 448 (612)
.|=.+.|.+|+.-+.+-. +-+++++|..+.. ..+++.++..|-. -+|+|+.-... .-+..-|+.+..... .-
T Consensus 43 ~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~-~~ 120 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPR-AD 120 (196)
T ss_pred HHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCc-cc
Confidence 344555556655444333 4579999987765 4455556666543 46777765444 222333555554332 22
Q ss_pred hHHHHHHHHcCCcEEee-CCCCcccccc
Q 007215 449 CTATAEALAMGKFVICA-DHPSNEFFRS 475 (612)
Q Consensus 449 gl~llEAMA~G~PVVas-~~gg~~~i~~ 475 (612)
..++.||..+|.|+|+- |.-+.+..++
T Consensus 121 ~~Av~EA~~l~IP~Iai~DTn~dp~~vd 148 (196)
T TIGR01012 121 HQALKEASEVGIPIVALCDTDNPLRYVD 148 (196)
T ss_pred cHHHHHHHHcCCCEEEEeeCCCCCccCC
Confidence 45899999999999998 4445444443
No 197
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=63.08 E-value=19 Score=35.20 Aligned_cols=99 Identities=15% Similarity=-0.002 Sum_probs=59.6
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHHHH--HhccceEEeccCCCcc
Q 007215 375 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHADDS--LHGYKVFINPSISDVL 448 (612)
Q Consensus 375 ~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~~l--l~~aDv~V~PS~~E~f 448 (612)
.|=...|..|+.-+... .+-+++++|..+.. ..+++.+...|-. -+|+|+.-....+ +..=|+.+.....+ =
T Consensus 49 ~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~-~ 126 (204)
T PRK04020 49 RKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRG-D 126 (204)
T ss_pred HHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcc-c
Confidence 45556666666555443 34568889987765 4555666666644 3677776655422 11225544443322 2
Q ss_pred hHHHHHHHHcCCcEEee-CCCCcccccc
Q 007215 449 CTATAEALAMGKFVICA-DHPSNEFFRS 475 (612)
Q Consensus 449 gl~llEAMA~G~PVVas-~~gg~~~i~~ 475 (612)
..++.||.-+|.|+|+- |.-.....++
T Consensus 127 ~~AI~EA~kl~IP~IaivDTn~dp~~Vd 154 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCDTDNLTSNVD 154 (204)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCcccCc
Confidence 57899999999999998 4444444443
No 198
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=60.66 E-value=57 Score=38.23 Aligned_cols=140 Identities=10% Similarity=0.027 Sum_probs=90.8
Q ss_pred CCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC----eEEEEEecCCC--HH---HHHH----HHH----HcCC----c
Q 007215 361 AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGNGED--AY---EVQS----AAK----RLDL----N 419 (612)
Q Consensus 361 ~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~----~~LvIvG~g~~--~~---~l~~----~~~----~l~l----~ 419 (612)
..+++++-+-+++.-||...=+.|+.++..++|. +.++.+..+.. .+ .++. .+. +.+- .
T Consensus 274 ~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~p 353 (732)
T KOG1050|consen 274 KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQP 353 (732)
T ss_pred cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccce
Confidence 3566788888999999998888888888777753 44444443221 12 1222 111 1111 1
Q ss_pred eEE-ecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcC----CcEEeeCCCCccccccCCcEEec--CCHHHHHH
Q 007215 420 LNF-QKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMG----KFVICADHPSNEFFRSFPNCLTY--KTSEDFVA 490 (612)
Q Consensus 420 v~f-~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G----~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~ 490 (612)
|.+ ...++..+ +++..+|++...+..+|..++.+|+.+|. .+.|.+..-|.+...+. ...++ -|.++++.
T Consensus 354 V~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d-~aivvnpw~~~~~~~ 432 (732)
T KOG1050|consen 354 VHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLED-AAIVVNPWDGDEFAI 432 (732)
T ss_pred EEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccc-cCEEECCcchHHHHH
Confidence 333 44455445 78888899999999999999999999885 45666655443332211 12233 67899999
Q ss_pred HHHHHHhCCCC
Q 007215 491 RVKEALANDPQ 501 (612)
Q Consensus 491 aI~~ll~~~~~ 501 (612)
+|..+++...+
T Consensus 433 ~i~~al~~s~~ 443 (732)
T KOG1050|consen 433 LISKALTMSDE 443 (732)
T ss_pred HHHHHhhcCHH
Confidence 99999965443
No 199
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=56.57 E-value=68 Score=28.87 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=39.1
Q ss_pred HHHhccceEEeccCCCcch--HH---HHHHHHcCCcEEeeCCCCc----cccccCCcEEe-cCCHHHHHHHHHHHH
Q 007215 431 DSLHGYKVFINPSISDVLC--TA---TAEALAMGKFVICADHPSN----EFFRSFPNCLT-YKTSEDFVARVKEAL 496 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fg--l~---llEAMA~G~PVVas~~gg~----~~i~~~~~g~l-~~d~~~la~aI~~ll 496 (612)
.++..||+.|.-- -|-+- ++ .--|.|.|+|.|.-..... .++- ..... +.++++..+.+..++
T Consensus 68 ~li~~aDvVVvrF-GekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvd--a~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 68 TLIEKADVVVVRF-GEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVD--AAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHhhCCEEEEEe-chHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHh--HhhHhhhCCHHHHHHHHHHHh
Confidence 6788889877641 12110 12 3346899999999876642 2322 22233 389999888888765
No 200
>PLN02527 aspartate carbamoyltransferase
Probab=55.22 E-value=1.4e+02 Score=31.20 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=74.0
Q ss_pred cCCeEEEeChhh---hccC-CCcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAAT---QDLP-KSVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~~---~~~~-~~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.|+.=.... .++. ...+.|||+-|....+|.. .-...+.+|. -....|.|+|-....+=...++.++.
T Consensus 96 y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-l~g~kva~vGD~~~~rv~~Sl~~~~~ 174 (306)
T PLN02527 96 YSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGR-LDGIKVGLVGDLANGRTVRSLAYLLA 174 (306)
T ss_pred hCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCC-cCCCEEEEECCCCCChhHHHHHHHHH
Confidence 478777765532 2222 2567888987654455542 2223344442 22468899996543344677777776
Q ss_pred HhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 387 KHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
.+ .++.+.+++.... .+++.+.+++.|..+.+ .++.++.++.|||+.....
T Consensus 175 ~~----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 175 KY----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEE---SSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred hc----CCCEEEEECCCccCCCHHHHHHHHHcCCEEEE---EcCHHHHhCCCCEEEECCc
Confidence 64 4678999886332 24555556665644443 3567789999998877553
No 201
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=54.48 E-value=1e+02 Score=33.71 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=75.0
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCcc----chhhhhhcc---CCCCcEEEEEeccCCccCHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGEK----VATDREQGQ---QAFSKGAYFLGKMVWAKGYRELID 383 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~~----~~~~~~~~~---~~~~~~il~vGrl~~~Kg~~~Li~ 383 (612)
++|.++.=... ..++. ...+.|||+-|.+..+|... -...+.+|. .-....|.|+|-+...+=...++.
T Consensus 182 y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~ 261 (429)
T PRK11891 182 YVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVK 261 (429)
T ss_pred hCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHH
Confidence 47877776542 23332 25688899887666666522 223344431 122468899997643444666677
Q ss_pred HHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 384 LLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 384 A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
++..+ .++++.+++.... .+++.+.+++.|..+.+ .++.++.++.|||+...+.
T Consensus 262 ~la~~----~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~---~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 262 LLALY----RGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ---TDDLAAGLRGADVVYATRI 317 (429)
T ss_pred HHHHh----cCCEEEEECCCccccCHHHHHHHHhcCCeEEE---EcCHHHHhCCCCEEEEcCc
Confidence 66543 3678989886432 24555556666655554 4667789999999877653
No 202
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=54.33 E-value=27 Score=31.08 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=30.7
Q ss_pred CCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 427 DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 427 ~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
++.++++..+|+.|--|..+..--.+-.|+.+|+|+|.--.|.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 4566888889999988866666666778889999999987775
No 203
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=53.27 E-value=3.4e+02 Score=29.66 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=66.3
Q ss_pred CccCHHHHHHHHHH-hhcc----CCCeEEEEEecCC--------CHHHHHHHHHHcCCceE-EecCCCCHHHHHhccceE
Q 007215 374 WAKGYRELIDLLAK-HKND----LDGFKLDVFGNGE--------DAYEVQSAAKRLDLNLN-FQKGRDHADDSLHGYKVF 439 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~-l~~~----~~~~~LvIvG~g~--------~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~aDv~ 439 (612)
...|.+..++++-+ +... ..+-.+-|+|... +..+++++.++.|+++. +++.-...+++.+..+.-
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~ 215 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAA 215 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCC
Confidence 34688888877743 3221 1122477777543 34889999999999954 445445556555555433
Q ss_pred EeccCCCcchHHHHHHH--HcCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 440 INPSISDVLCTATAEAL--AMGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 440 V~PS~~E~fgl~llEAM--A~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
++-.....++..+.+.| -+|+|.+....+ |. ...+++-++|.+++
T Consensus 216 lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~------------~~T~~~l~~ia~~~ 263 (426)
T cd01972 216 ANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGI------------EATDKWLREIAKVL 263 (426)
T ss_pred EEEEEChhHHHHHHHHHHHHhCCCeEecCCccCH------------HHHHHHHHHHHHHh
Confidence 33322323677888888 489999865433 22 23455666666666
No 204
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=52.15 E-value=60 Score=30.65 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=57.0
Q ss_pred HHHHHHHHhhccCCCeEEEEEecCCC-HHHHHHHHHHcCCceEEecCCC-CHHHHHhccceEEeccCCCcchHHHHHHHH
Q 007215 380 ELIDLLAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLNLNFQKGRD-HADDSLHGYKVFINPSISDVLCTATAEALA 457 (612)
Q Consensus 380 ~Li~A~~~l~~~~~~~~LvIvG~g~~-~~~l~~~~~~l~l~v~f~g~~~-~~~~ll~~aDv~V~PS~~E~fgl~llEAMA 457 (612)
..++.++++.....+.+++|+|.|.. ...+.+...+.+..+.+..... +..+.++.||++|...-... +.--|.+.
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~--ii~~~~~~ 107 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPG--LVKGDMVK 107 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCc--eecHHHcc
Confidence 44555555554556789999999986 4435555555665666555443 34489999999998865532 22233333
Q ss_pred cCCcEEeeCCCCccccccCCcEEec
Q 007215 458 MGKFVICADHPSNEFFRSFPNCLTY 482 (612)
Q Consensus 458 ~G~PVVas~~gg~~~i~~~~~g~l~ 482 (612)
-| .+.-|.+....+. ..+|-++
T Consensus 108 ~~--~viIDla~prdvd-~~~~~~~ 129 (168)
T cd01080 108 PG--AVVIDVGINRVPD-KSGGKLV 129 (168)
T ss_pred CC--eEEEEccCCCccc-ccCCCee
Confidence 33 4555555433322 3334455
No 205
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=51.85 E-value=1e+02 Score=27.80 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=37.9
Q ss_pred HHHhccceEEeccCCCcch--HH---HHHHHHcCCcEEeeCCCCc----cccccCCcEEec-CCHHHHHHHHHHHH
Q 007215 431 DSLHGYKVFINPSISDVLC--TA---TAEALAMGKFVICADHPSN----EFFRSFPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fg--l~---llEAMA~G~PVVas~~gg~----~~i~~~~~g~l~-~d~~~la~aI~~ll 496 (612)
.++..||+.|.-- -|-+- ++ .--|.|.|+|.|.-..... .++- .....+ .++++..+.+..++
T Consensus 71 ~li~~aDvvVvrF-GekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvd--aaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 71 KLIEKADVVIALF-GEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVD--NKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHhhCCEEEEEe-chHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHh--HHHHHHhcCHHHHHHHHHHhh
Confidence 5778888877641 12110 12 3346899999999876642 2322 122333 88888888887665
No 206
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=51.55 E-value=22 Score=35.77 Aligned_cols=101 Identities=16% Similarity=0.004 Sum_probs=57.4
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHH--HHHhccceEEeccCCCc
Q 007215 374 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHAD--DSLHGYKVFINPSISDV 447 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~--~ll~~aDv~V~PS~~E~ 447 (612)
-.|=.+.|..|+.-+..-..+-.++++|..+.. ..+++.+...|-. -+|+|+.-... .-+..-|++|..... .
T Consensus 51 L~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~-~ 129 (249)
T PTZ00254 51 LAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPR-T 129 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCC-c
Confidence 345555666665444322123457788877654 4455556655543 46777655444 222333555554322 2
Q ss_pred chHHHHHHHHcCCcEEee-CCCCcccccc
Q 007215 448 LCTATAEALAMGKFVICA-DHPSNEFFRS 475 (612)
Q Consensus 448 fgl~llEAMA~G~PVVas-~~gg~~~i~~ 475 (612)
=..++.||-.+|.|||+- |.-+....++
T Consensus 130 d~qAI~EA~~lnIPvIal~DTds~p~~VD 158 (249)
T PTZ00254 130 DHQAIREASYVNIPVIALCDTDSPLEYVD 158 (249)
T ss_pred chHHHHHHHHhCCCEEEEecCCCCcccCc
Confidence 245899999999999998 4445444443
No 207
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=50.88 E-value=87 Score=26.94 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=48.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEeccCCCcchHHHHHHHHcCCcEEeeCC
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPSISDVLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~ 467 (612)
++++++-+ ..++.+..++.+++++.. ...+.++++. ..|+.+..+..+.-.-.+.+++..|++|++-.-
T Consensus 24 ~~~~v~~v-~d~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 24 PDFEVVAV-CDPDPERAEAFAEKYGIP-----VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp TTEEEEEE-ECSSHHHHHHHHHHTTSE-----EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred CCcEEEEE-EeCCHHHHHHHHHHhccc-----chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 45655533 234556677777888855 3455778888 568887777766677789999999999998743
No 208
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=49.66 E-value=95 Score=32.89 Aligned_cols=129 Identities=17% Similarity=0.033 Sum_probs=68.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCc-eEEecCC------CCHH----HHHhccceEEecc--CCCcchHHHHHHHHcC
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKGR------DHAD----DSLHGYKVFINPS--ISDVLCTATAEALAMG 459 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~-v~f~g~~------~~~~----~ll~~aDv~V~PS--~~E~fgl~llEAMA~G 459 (612)
.+-+++++|.|+..+..-+...+.|.. +.+.... .+.. ++...+|+.+..| ..-+.+....|.+..-
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~ 252 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI 252 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc
Confidence 456788888877765544444555544 4443222 1111 4567889999853 3334555555554422
Q ss_pred CcEEeeCCCC---ccccccCCcEEecCCHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHHHHHHHHHh
Q 007215 460 KFVICADHPS---NEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 460 ~PVVas~~gg---~~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~~~~~~~~sWe~~~~~~~~~y~ 525 (612)
.+-+.-|..- .+.+....+.. ..|.++|.+-+.+-+. .+.+...+...--+..+.+|.+.|+
T Consensus 253 ~~r~~iDLAvPRdId~v~~~~~v~-Ly~iDdL~~i~~~n~~---~R~~~~~~ae~iI~~~~~~~~~~~~ 317 (338)
T PRK00676 253 PDRIVFDFNVPRTFPWSETPFPHR-YLDMDFISEWVQKHLQ---CRKEVNNKHKLSLREAAYKQWESYE 317 (338)
T ss_pred cCcEEEEecCCCCCccccccCCcE-EEEhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2124445443 23222222323 3567777666665552 2223333333455678889999998
No 209
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.76 E-value=1.9e+02 Score=28.28 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCceEEe-cCCCCHH---HHHh-----ccc-eEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 407 YEVQSAAKRLDLNLNFQ-KGRDHAD---DSLH-----GYK-VFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~-g~~~~~~---~ll~-----~aD-v~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
..+++.+++++..+.+. ....+.+ +.+. .+| +.+.|...+...-.+-++...|+|||..+.+
T Consensus 18 ~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 33445566666664442 2222223 2222 236 5556666677777788899999999999877
No 210
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=46.81 E-value=78 Score=33.05 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=56.6
Q ss_pred HHHHHHHHhhccCCCeE-E-EEEecCCCH-----HHHHHHHHHcCCce-EE-ecCCCCHH----HHHhccceEEeccCC-
Q 007215 380 ELIDLLAKHKNDLDGFK-L-DVFGNGEDA-----YEVQSAAKRLDLNL-NF-QKGRDHAD----DSLHGYKVFINPSIS- 445 (612)
Q Consensus 380 ~Li~A~~~l~~~~~~~~-L-vIvG~g~~~-----~~l~~~~~~l~l~v-~f-~g~~~~~~----~ll~~aDv~V~PS~~- 445 (612)
.-+++++++. |+++ + +++..++.. +++++.+++.|+.| .. .....+.+ .+....|++..|...
T Consensus 147 q~i~lik~~~---Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~ 223 (322)
T COG2984 147 QQIELIKALL---PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL 223 (322)
T ss_pred HHHHHHHHhC---CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH
Confidence 3344444443 5543 3 566666632 77888889999883 33 44555555 344556888877543
Q ss_pred --CcchHHHHHHHHcCCcEEeeCCCC
Q 007215 446 --DVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 446 --E~fgl~llEAMA~G~PVVas~~gg 469 (612)
-++...+.+|....+|+++++.+.
T Consensus 224 i~s~~~~l~~~a~~~kiPli~sd~~~ 249 (322)
T COG2984 224 IVSAIESLLQVANKAKIPLIASDTSS 249 (322)
T ss_pred HHHHHHHHHHHHHHhCCCeecCCHHH
Confidence 345567889999999999998765
No 211
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=46.71 E-value=12 Score=32.37 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhhhhhhhhccccCCCccccccccCcccccccc
Q 007215 71 CDKIVESLCSKRKEQLLLRSIAGGECSVLENDNINDELDLRIA 113 (612)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (612)
+.++.+.|.+.+-+...+.. +-..+|+||+||+|++
T Consensus 67 F~~L~~~l~~~~id~~~L~~-------~E~~d~iFp~idyr~f 102 (102)
T PF09210_consen 67 FWRLYDMLESGRIDEEWLEE-------LEEKDNIFPDIDYRIF 102 (102)
T ss_dssp HHHHHHHHHHS---HHHHHH-------HHHHS---TT--GGGG
T ss_pred HHHHHHHHHcCCcCHHHHHH-------HHHHcCCCcccCCCcC
Confidence 34555666654444333332 2336899999999986
No 212
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=44.81 E-value=42 Score=28.45 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=45.1
Q ss_pred EEEEecCCCH----HHHHHHHHHcCCceEE-ecCCCCHHHHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCCC
Q 007215 397 LDVFGNGEDA----YEVQSAAKRLDLNLNF-QKGRDHADDSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHP 468 (612)
Q Consensus 397 LvIvG~g~~~----~~l~~~~~~l~l~v~f-~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~g 468 (612)
|++.|.|-.. ..+++.+++.|+++.+ .....+.++....+|+++..... .+-..-++..+ .|+||+.-+..
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi-~~~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQV-AYMLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchH-HHHHHHHHHHhhhcCCCEEEeChh
Confidence 5677777554 5677778888888655 44444555677888987776543 22333444444 47799987543
No 213
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=44.59 E-value=2.6e+02 Score=27.85 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=28.2
Q ss_pred ceEEeccCCCcchHHHHHHHHcCCcEEee-CCCCcccccc
Q 007215 437 KVFINPSISDVLCTATAEALAMGKFVICA-DHPSNEFFRS 475 (612)
Q Consensus 437 Dv~V~PS~~E~fgl~llEAMA~G~PVVas-~~gg~~~i~~ 475 (612)
|++|.-...|.. .+++||.=+++|+|+- |....+..+.
T Consensus 175 D~vvvln~~e~~-sAilEA~K~~IPTIgIVDtN~~P~liT 213 (251)
T KOG0832|consen 175 DLVVVLNPEENH-SAILEAAKMAIPTIGIVDTNCNPELIT 213 (251)
T ss_pred ceeEecCccccc-HHHHHHHHhCCCeEEEecCCCCcccee
Confidence 777777666665 4899999999999997 4445555543
No 214
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=44.36 E-value=62 Score=27.74 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=44.3
Q ss_pred EEEEecCCCH----HHHHHHHHHcCCceEE-ecCCCCHHHHHhccceEEeccCCCcchHHHHH--HHHcCCcEEeeC
Q 007215 397 LDVFGNGEDA----YEVQSAAKRLDLNLNF-QKGRDHADDSLHGYKVFINPSISDVLCTATAE--ALAMGKFVICAD 466 (612)
Q Consensus 397 LvIvG~g~~~----~~l~~~~~~l~l~v~f-~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llE--AMA~G~PVVas~ 466 (612)
++++|.|-.. +.+++.+++.|+++.+ -....+.++....+|+++..... .|-..-++ +-..|+||..-+
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv-~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQM-ASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChH-HHHHHHHHHHhhhcCCCEEEeC
Confidence 5666777554 7788888999988665 34444555788889977766442 22222233 334588998765
No 215
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=43.56 E-value=3e+02 Score=30.07 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=55.7
Q ss_pred CccCHHHHHHHHHH-hhcc---CCCeEEEEEecCC----CHHHHHHHHHHcCCceEEecC-------------------C
Q 007215 374 WAKGYRELIDLLAK-HKND---LDGFKLDVFGNGE----DAYEVQSAAKRLDLNLNFQKG-------------------R 426 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~-l~~~---~~~~~LvIvG~g~----~~~~l~~~~~~l~l~v~f~g~-------------------~ 426 (612)
...|.+..++++-+ +... ..+-.+.++|... +..+++++.++.|+++..+.. -
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg 210 (428)
T cd01965 131 HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGG 210 (428)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCC
Confidence 34788888877633 3221 1234566666433 468999999999999554322 1
Q ss_pred CCHHHHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCC
Q 007215 427 DHADDSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADH 467 (612)
Q Consensus 427 ~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~ 467 (612)
...+++-+..+.-++-....-++..+.|+|. +|+|-+..+.
T Consensus 211 ~~~e~i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~ 253 (428)
T cd01965 211 TTLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVPYILFPT 253 (428)
T ss_pred CcHHHHHHhccCcEEEEEChhhhHHHHHHHHHHHCCCeeecCC
Confidence 3444444444322222222235667777775 8999987754
No 216
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=43.08 E-value=56 Score=29.88 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Cccccc-
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFR- 474 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~- 474 (612)
+.+++.++++|+++.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|+ +.++|+|=-... ..|.+.
T Consensus 31 ~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~fR~ 110 (141)
T TIGR01088 31 EIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEFRH 110 (141)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 455566777787788776665555 666655 3 8889987777889999997 578999865333 344333
Q ss_pred -----cCCcEEec-CCHHHHHHHHHHHH
Q 007215 475 -----SFPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 475 -----~~~~g~l~-~d~~~la~aI~~ll 496 (612)
+-..|.+. --.+...-|+..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~a~~ 138 (141)
T TIGR01088 111 HSYTAPVAGGVIVGLGAQGYLLALRYLV 138 (141)
T ss_pred cccccccceEEEeecCHHHHHHHHHHHH
Confidence 22345565 45666666666655
No 217
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=42.93 E-value=5e+02 Score=28.64 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=63.7
Q ss_pred CccCHHHHHHHHHH-hhcc-CC--------CeEEEEEecCC---CHHHHHHHHHHcCCceE-EecCCCCHHHHHhcc--c
Q 007215 374 WAKGYRELIDLLAK-HKND-LD--------GFKLDVFGNGE---DAYEVQSAAKRLDLNLN-FQKGRDHADDSLHGY--K 437 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~-l~~~-~~--------~~~LvIvG~g~---~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~a--D 437 (612)
...|.+..++++-+ +... .+ +-.+-|+|.-. +..+++++.+++|+++. .++.-...+++.... .
T Consensus 167 ~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~ 246 (456)
T TIGR01283 167 KNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAK 246 (456)
T ss_pred hhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCc
Confidence 44677766666633 2211 11 34577778533 34689999999999954 355545556554444 4
Q ss_pred eEEeccCCCcchHHHHHHH--HcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHh
Q 007215 438 VFINPSISDVLCTATAEAL--AMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAM--A~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~ 497 (612)
+-|..+ ...+..+.+.| -+|+|.+....=| ..+.+++-++|.+++.
T Consensus 247 lniv~~--~~~~~~~a~~L~e~~GiP~~~~~~~G------------~~~T~~~L~~Ia~~lg 294 (456)
T TIGR01283 247 LNMVQC--SKSMINLARKMEEKYGIPYFEGSFYG------------IEDTSKALRDIADLFG 294 (456)
T ss_pred EEEEEC--HhHHHHHHHHHHHHcCCCEEecCCCc------------HHHHHHHHHHHHHHhC
Confidence 444332 22446678888 5799998531001 1345666677777773
No 218
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=42.84 E-value=1.3e+02 Score=27.25 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=57.9
Q ss_pred CCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccce
Q 007215 361 AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKV 438 (612)
Q Consensus 361 ~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv 438 (612)
++++.++.+.- .+|++.|.+...+++ .+.+++.+....+.+++.....+..++++.+.....++.. .+|+
T Consensus 22 ~d~f~v~~Lsa---~~n~~~L~~q~~~f~-----p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~~~~~~D~ 93 (129)
T PF02670_consen 22 PDKFEVVALSA---GSNIEKLAEQAREFK-----PKYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELAEEPEVDI 93 (129)
T ss_dssp TTTEEEEEEEE---SSTHHHHHHHHHHHT------SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHTHTT-SE
T ss_pred CCceEEEEEEc---CCCHHHHHHHHHHhC-----CCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHhcCCCCCE
Confidence 34445544432 689999999988873 3456666444445565555444555777666665556666 4688
Q ss_pred EEeccCCCcchH-HHHHHHHcCCcEEeeC
Q 007215 439 FINPSISDVLCT-ATAEALAMGKFVICAD 466 (612)
Q Consensus 439 ~V~PS~~E~fgl-~llEAMA~G~PVVas~ 466 (612)
.|+... -.-|+ +.++|+-.|+-+.-.|
T Consensus 94 vv~Ai~-G~aGL~pt~~Ai~~gk~iaLAN 121 (129)
T PF02670_consen 94 VVNAIV-GFAGLKPTLAAIKAGKDIALAN 121 (129)
T ss_dssp EEE--S-SGGGHHHHHHHHHTTSEEEE--
T ss_pred EEEeCc-ccchHHHHHHHHHCCCeEEEec
Confidence 888754 22243 6899999998765543
No 219
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=42.78 E-value=2.8e+02 Score=29.41 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=72.5
Q ss_pred cCCeEEEeChhh---hccC-CCcEEEeCCCCCCCCCCCcc----chhhhhh---ccCCCCcEEEEEeccCCccCHHHHHH
Q 007215 315 YCDKVLRLSAAT---QDLP-KSVICNVHGVNPKFLQIGEK----VATDREQ---GQQAFSKGAYFLGKMVWAKGYRELID 383 (612)
Q Consensus 315 ~ad~vI~~S~~~---~~~~-~~~i~vinGVd~~~f~~~~~----~~~~~~~---~~~~~~~~il~vGrl~~~Kg~~~Li~ 383 (612)
++|.|+.=.... .++. ...+.|||+-|-+..+|... -...+.+ |..-....|.|+|-....+=...++.
T Consensus 100 y~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~ 179 (338)
T PRK08192 100 YSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSR 179 (338)
T ss_pred cCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHH
Confidence 578877766532 2232 25678889877445555422 2233332 21123468899997644455667777
Q ss_pred HHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 384 LLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 384 A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
++... .++.+.+++.-.. .+.+.+.+++.|..+.. .++.++.+..|||+...+.
T Consensus 180 ~l~~~----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 180 LLCMY----KNVSFTLVSPKELAMPDYVISDIENAGHKITI---TDQLEGNLDKADILYLTRI 235 (338)
T ss_pred HHHHh----cCCEEEEECCccccCCHHHHHHHHHcCCeEEE---EcCHHHHHccCCEEEEcCc
Confidence 66543 3678889886432 24444455555544443 4566789999998887644
No 220
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=42.25 E-value=50 Score=30.40 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Cccccc-
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFR- 474 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~- 474 (612)
+.+++.+++++..+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|+ ++++|+|=-... ..|.+.
T Consensus 33 ~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK13015 33 ALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAFRH 112 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 445556666777777766655555 455444 3 8889977767788999996 578999865333 344333
Q ss_pred -----cCCcEEec-CCHHHHHHHHHHHH
Q 007215 475 -----SFPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 475 -----~~~~g~l~-~d~~~la~aI~~ll 496 (612)
+-..|.+. --++...-|+..++
T Consensus 113 ~S~is~~~~G~I~G~G~~gY~lAl~al~ 140 (146)
T PRK13015 113 HSYVSAIADGVICGLGTEGYRLALRRLA 140 (146)
T ss_pred cccccCceeEEEeeCCHHHHHHHHHHHH
Confidence 23456666 55666666666665
No 221
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.13 E-value=2.3e+02 Score=30.25 Aligned_cols=99 Identities=11% Similarity=-0.006 Sum_probs=59.5
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCC-----------CH---HHHHHHHHHcCCceEE-ecCCCC
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGE-----------DA---YEVQSAAKRLDLNLNF-QKGRDH 428 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~-----------~~---~~l~~~~~~l~l~v~f-~g~~~~ 428 (612)
+.++..| .+.-.+.+.+++..+.+++. .++++..|.-. .. +.+.+..++.|+.+.- .-...+
T Consensus 101 ~l~vIAG-PCsIEs~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d~~~ 177 (352)
T PRK13396 101 PVVVVAG-PCSVENEEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMDAAD 177 (352)
T ss_pred eEEEEEe-CCcccCHHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCCHHH
Confidence 3444555 66677888888888888775 45555544211 12 4555666788865321 222223
Q ss_pred HHHHHhccceEEeccCC-CcchHHHHHHH-HcCCcEEeeCC
Q 007215 429 ADDSLHGYKVFINPSIS-DVLCTATAEAL-AMGKFVICADH 467 (612)
Q Consensus 429 ~~~ll~~aDv~V~PS~~-E~fgl~llEAM-A~G~PVVas~~ 467 (612)
.+.+...+|++=.+|.. ..|. +++++ ..|+||+.++.
T Consensus 178 v~~~~~~~d~lqIga~~~~n~~--LL~~va~t~kPVllk~G 216 (352)
T PRK13396 178 LEKIAEVADVIQVGARNMQNFS--LLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHhhCCeEEECcccccCHH--HHHHHHccCCeEEEeCC
Confidence 33444557999999874 4444 45555 67999998853
No 222
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=41.49 E-value=3.3e+02 Score=26.19 Aligned_cols=80 Identities=20% Similarity=0.063 Sum_probs=47.9
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHH-HH-------------------------HhccceEEecc
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHAD-DS-------------------------LHGYKVFINPS 443 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~-~l-------------------------l~~aDv~V~PS 443 (612)
+-+++++|..+.. ..+++.++..+.. -+|+|+.-... .. ...-|++|...
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~ 135 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLD 135 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeC
Confidence 4578888887654 3444455555433 35666655444 22 12236666554
Q ss_pred CCCcchHHHHHHHHcCCcEEee-CCCCccccc
Q 007215 444 ISDVLCTATAEALAMGKFVICA-DHPSNEFFR 474 (612)
Q Consensus 444 ~~E~fgl~llEAMA~G~PVVas-~~gg~~~i~ 474 (612)
..+. ..++.||-.+|.|+|+- |.......+
T Consensus 136 ~~~~-~~ai~Ea~~l~IP~I~i~Dtn~~~~~i 166 (193)
T cd01425 136 PRKE-HQAIREASKLGIPVIAIVDTNCDPDLI 166 (193)
T ss_pred Cccc-hHHHHHHHHcCCCEEEEecCCCCCccc
Confidence 4322 67899999999999998 333433333
No 223
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=41.26 E-value=1.3e+02 Score=33.11 Aligned_cols=127 Identities=18% Similarity=0.070 Sum_probs=66.5
Q ss_pred EEEEEeccC-----CccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHc-CCceEEecCCCCHHHHHhccce
Q 007215 365 GAYFLGKMV-----WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRL-DLNLNFQKGRDHADDSLHGYKV 438 (612)
Q Consensus 365 ~il~vGrl~-----~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l-~l~v~f~g~~~~~~~ll~~aDv 438 (612)
+++..|.+. +.+-...+..+++.+ +++.++..=..++...+.+...+. ...|.+.++.++.+-++..-.+
T Consensus 280 vyvSfGS~~~~~~lp~~~~~~l~~~l~~~----~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v 355 (496)
T KOG1192|consen 280 VYISFGSMVNSADLPEEQKKELAKALESL----QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAV 355 (496)
T ss_pred EEEECCcccccccCCHHHHHHHHHHHHhC----CCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcC
Confidence 334556664 455666777777766 355555554433322211111111 1137777899888854222222
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-ccccc-CCcEEec---CCHHHHHHHHHHHHh
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRS-FPNCLTY---KTSEDFVARVKEALA 497 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~-~~~g~l~---~d~~~la~aI~~ll~ 497 (612)
-.+-+ +=|++ +++||+.+|+|+|+.+.=+ + ..+.+ +..+... .+...+.+++.+++.
T Consensus 356 ~~FvT-HgG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~ 421 (496)
T KOG1192|consen 356 GGFVT-HGGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILE 421 (496)
T ss_pred cEEEE-CCccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHc
Confidence 22222 22333 4599999999999765432 2 23333 3344443 222337888888873
No 224
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.76 E-value=3.8e+02 Score=27.34 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=60.8
Q ss_pred EEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEec-----------CCCH---HHHHHHHHHcCCceEE-ecCCCCHH
Q 007215 366 AYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGN-----------GEDA---YEVQSAAKRLDLNLNF-QKGRDHAD 430 (612)
Q Consensus 366 il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~-----------g~~~---~~l~~~~~~l~l~v~f-~g~~~~~~ 430 (612)
++.++..+--...+.+++..+++++. +++++..|. |... ..+++..+++|+.+.- .-...+.+
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~ 105 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVE 105 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHH
Confidence 44555566667888999999888874 456777771 1112 5566777888866322 22222333
Q ss_pred HHHhccceEEeccCCCcchHHHHHH-HHcCCcEEeeCC
Q 007215 431 DSLHGYKVFINPSISDVLCTATAEA-LAMGKFVICADH 467 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fgl~llEA-MA~G~PVVas~~ 467 (612)
.+...+|++-.+|.. ..-..++++ -..|+||+.++.
T Consensus 106 ~l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 106 EVADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 333447888888864 223334444 467999998854
No 225
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=40.37 E-value=1.1e+02 Score=33.08 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=54.7
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhcc--ceEEeccCCCcchHHH
Q 007215 375 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINPSISDVLCTAT 452 (612)
Q Consensus 375 ~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~a--Dv~V~PS~~E~fgl~l 452 (612)
.+|++.+.+..++.. .+.+++.+......+++.... ..+.++.+.....++.+.. |++|....-..---.+
T Consensus 36 ~~n~~~l~~q~~~f~-----p~~v~i~~~~~~~~l~~~l~~--~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~pt 108 (385)
T PRK05447 36 GKNVELLAEQAREFR-----PKYVVVADEEAAKELKEALAA--AGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLPT 108 (385)
T ss_pred CCCHHHHHHHHHHhC-----CCEEEEcCHHHHHHHHHhhcc--CCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHHH
Confidence 578888877776663 346666654434444443321 1244555555555777754 8888876543223568
Q ss_pred HHHHHcCCcEEeeCCC
Q 007215 453 AEALAMGKFVICADHP 468 (612)
Q Consensus 453 lEAMA~G~PVVas~~g 468 (612)
++|+.+|++|...+-.
T Consensus 109 l~Ai~aGK~VaLANKE 124 (385)
T PRK05447 109 LAAIRAGKRIALANKE 124 (385)
T ss_pred HHHHHCCCcEEEeCHH
Confidence 9999999999997754
No 226
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=40.08 E-value=3.4e+02 Score=28.22 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=68.0
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCcc----chhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGEK----VATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~~----~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++. ...+.|||+-+ ...+|... -...+.+|.- +...|.|+|-+ ..=...++.++.
T Consensus 94 y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~~HPtQaL~Dl~Ti~e~~g~l-~g~~v~~vGd~--~~v~~Sl~~~l~ 169 (304)
T TIGR00658 94 YVDGIMARVYKHEDVEELAKYASVPVINGLT-DLFHPCQALADLLTIIEHFGKL-KGVKVVYVGDG--NNVCNSLMLAGA 169 (304)
T ss_pred hCCEEEEECCChHHHHHHHHhCCCCEEECCC-CCCChHHHHHHHHHHHHHhCCC-CCcEEEEEeCC--CchHHHHHHHHH
Confidence 47877776553 22222 25677888744 34555421 2233344421 23578899976 234556677776
Q ss_pred HhhccCCCeEEEEEecCCCH--HH----HHHHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~----l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
++ ++++.+++..... +. +++.+++.|..+.+. ++.++.++.+|++...+
T Consensus 170 ~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~---~d~~~a~~~aDvvy~~~ 224 (304)
T TIGR00658 170 KL-----GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELT---HDPVEAVKGADVIYTDV 224 (304)
T ss_pred Hc-----CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEE---cCHHHHhCCCCEEEEcC
Confidence 65 5789999853321 22 223345556555432 56678999999888764
No 227
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=39.41 E-value=54 Score=29.95 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Cccccc-
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFR- 474 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~- 474 (612)
+.+++.++++|+.+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|+ +.++|+|=-... ..|.+.
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~fR~ 110 (140)
T cd00466 31 ALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREEFRH 110 (140)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 445566677777777776655555 555555 3 8889977766788999996 568899865433 334332
Q ss_pred -----cCCcEEec-CCHHHHHHHHHHHH
Q 007215 475 -----SFPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 475 -----~~~~g~l~-~d~~~la~aI~~ll 496 (612)
+-..|.+. --.+...-|+..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~~~~ 138 (140)
T cd00466 111 HSVISPVATGVIAGLGADGYRLALEALA 138 (140)
T ss_pred ccccccceeEEEEeCCHHHHHHHHHHHH
Confidence 23455666 55667777777665
No 228
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=39.13 E-value=62 Score=29.80 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Cccccc-
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFR- 474 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~- 474 (612)
+.+++.++++|+.+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|+ +.++|+|=-... ..|.+.
T Consensus 33 ~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK05395 33 ALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRH 112 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 445555667777777766655555 555555 2 8889987777788999997 478999865433 344332
Q ss_pred -----cCCcEEec-CCHHHHHHHHHHHH
Q 007215 475 -----SFPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 475 -----~~~~g~l~-~d~~~la~aI~~ll 496 (612)
+-..|.+. --.+...-|+..++
T Consensus 113 ~S~is~~a~G~I~G~G~~gY~lAl~al~ 140 (146)
T PRK05395 113 HSYISDVAVGVICGFGADGYLLALEALA 140 (146)
T ss_pred cccccccceEEEeeCCHHhHHHHHHHHH
Confidence 23456666 45566666666655
No 229
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=39.05 E-value=2.7e+02 Score=29.46 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=68.4
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCcc----chhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGEK----VATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~~----~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++. ...+.|||+-+ +..+|... -...+.+|..-....|.|+|-+.. .=...++.++.
T Consensus 101 y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~-~v~~Sl~~~~~ 178 (334)
T PRK01713 101 MYDAIEYRGFKQSIVNELAEYAGVPVFNGLT-DEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN-NMGNSLLLIGA 178 (334)
T ss_pred hCCEEEEEcCchHHHHHHHHhCCCCEEECCC-CCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc-CHHHHHHHHHH
Confidence 47887775552 22222 25678889855 45566522 223333331123457899997532 23455777777
Q ss_pred HhhccCCCeEEEEEecCCCH--HH----HHHHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~----l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
++ ++.+.+++..... +. .++.+++.|..+.+ .++.++.+..|||+...+
T Consensus 179 ~~-----g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~---~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 179 KL-----GMDVRICAPKALLPEASLVEMCEKFAKESGARITV---TDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred Hc-----CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEEcc
Confidence 65 5788888853221 22 23344555655544 366778999999887753
No 230
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=38.50 E-value=71 Score=27.04 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=44.8
Q ss_pred EEEEecCCCH----HHHHHHHHHcCCceEE-ecCCCCHHHHHhccceEEeccCCCcchHHHHH--HHHcCCcEEeeCC
Q 007215 397 LDVFGNGEDA----YEVQSAAKRLDLNLNF-QKGRDHADDSLHGYKVFINPSISDVLCTATAE--ALAMGKFVICADH 467 (612)
Q Consensus 397 LvIvG~g~~~----~~l~~~~~~l~l~v~f-~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llE--AMA~G~PVVas~~ 467 (612)
++++|.|-.. +.+++.+++.|+++.+ .....+.++....+|+++..... .+-..-++ +.-.++||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv-~~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQV-RYMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhH-HHHHHHHHHHhccCCCcEEEcCh
Confidence 6777777654 5677778888887555 44444555677889977766442 22333344 3457889987754
No 231
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=37.96 E-value=1.1e+02 Score=31.05 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 426 RDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 426 ~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
..+.++++..+|+.+--+..+...-.+..|+..|+|||....|
T Consensus 51 ~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 51 TDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred cCCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3556677778899987776666666788999999999987655
No 232
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=37.84 E-value=2.8e+02 Score=29.69 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=56.7
Q ss_pred CcEEEeCCCCCCCCCCCcc----chhhhhhccCC--CCcEEE--EEeccCCccCH---HHHHHHHHHhhccCCCeEEEEE
Q 007215 332 SVICNVHGVNPKFLQIGEK----VATDREQGQQA--FSKGAY--FLGKMVWAKGY---RELIDLLAKHKNDLDGFKLDVF 400 (612)
Q Consensus 332 ~~i~vinGVd~~~f~~~~~----~~~~~~~~~~~--~~~~il--~vGrl~~~Kg~---~~Li~A~~~l~~~~~~~~LvIv 400 (612)
..+.|||+-+ +..+|... -...+.+|..+ ....+. +.|.+...++. ..++.++.++ ++++.++
T Consensus 134 s~vPVINa~~-~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~-----G~~v~~~ 207 (357)
T TIGR03316 134 QRPPLVNLQC-DIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRF-----GMDVTLA 207 (357)
T ss_pred CCCCEEECCC-CCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHc-----CCEEEEE
Confidence 4578889765 44666522 22334454211 123444 44433222222 4577777766 6789999
Q ss_pred ecCCC--HHHHH----HHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 401 GNGED--AYEVQ----SAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 401 G~g~~--~~~l~----~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
+.... .+.+. +.+++.|..+.+ .++.++.++.+|++...+
T Consensus 208 ~P~~~~~~~~~~~~a~~~~~~~g~~~~~---~~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 208 HPEGYHLLPEVIEVAKKNAAENGGKFNI---VNSMDEAFKDADIVYPKS 253 (357)
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEECC
Confidence 86432 23332 334556655543 366778899999887764
No 233
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=37.36 E-value=2.9e+02 Score=28.05 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=70.5
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc----eEEecCCCCHH--HHHhccc
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN----LNFQKGRDHAD--DSLHGYK 437 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~----v~f~g~~~~~~--~ll~~aD 437 (612)
.+++.+|+ |++..+... . . ...+.+.+. |..+.+. .+.++|+. +-..|..+... ++++.+.
T Consensus 131 ~i~lttG~----k~l~~f~~~---~-~-~~~~~~RvL---P~~~~l~-~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~ 197 (256)
T TIGR00715 131 RVFLTAGA----SWLSHFSLS---Q-D-EAVVFVRVL---PYPQALA-QALKLGFPSDRIIAMRGPFSEELEKALLREYR 197 (256)
T ss_pred cEEEecCc----chHHHHhhc---c-C-CceEEEEEC---CCchhhH-HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcC
Confidence 57777886 677666442 1 1 122433443 4444454 46777775 44567766555 8888875
Q ss_pred --eEEeccCCC--cchHHHHHHHHcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 438 --VFINPSISD--VLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 438 --v~V~PS~~E--~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
++|.=-.-+ ++--++--|+.+|.|||.-+.+..+.- .-.+.|.+++.+.+.+++
T Consensus 198 i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~-----~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 198 IDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPG-----VAIFDDISQLNQFVARLL 255 (256)
T ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCC-----CccCCCHHHHHHHHHHhc
Confidence 444332222 455678889999999999988753210 124478888888887765
No 234
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=37.31 E-value=2.2e+02 Score=27.58 Aligned_cols=99 Identities=9% Similarity=0.093 Sum_probs=55.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-ccc
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-NEF 472 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~~~ 472 (612)
+.++.++... ..+++.++++.. .+.+...... +..+..+|+++..+-.+..-..+.+....|.+|-+.+.+. .++
T Consensus 33 ga~V~VIs~~-~~~~l~~l~~~~--~i~~~~~~~~-~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f 108 (202)
T PRK06718 33 GAHIVVISPE-LTENLVKLVEEG--KIRWKQKEFE-PSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNV 108 (202)
T ss_pred CCeEEEEcCC-CCHHHHHHHhCC--CEEEEecCCC-hhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeE
Confidence 3556666532 234566655542 2444332222 3457788988877666655666666667889988887764 333
Q ss_pred ccc---CCcEEec-----CCHHHHHHHHHHHH
Q 007215 473 FRS---FPNCLTY-----KTSEDFVARVKEAL 496 (612)
Q Consensus 473 i~~---~~~g~l~-----~d~~~la~aI~~ll 496 (612)
+.. ..+.+.+ +....++..|.+-+
T Consensus 109 ~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~i 140 (202)
T PRK06718 109 VFPSALHRGKLTISVSTDGASPKLAKKIRDEL 140 (202)
T ss_pred EEeeEEEcCCeEEEEECCCCChHHHHHHHHHH
Confidence 222 1122222 44556777776665
No 235
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=37.27 E-value=4.3e+02 Score=28.81 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=64.9
Q ss_pred CccCHHHHHHHHHH-hhcc---CCCeEEEEEecC--------CCHHHHHHHHHHcCCceE-EecCCCCHHHHHhc--cce
Q 007215 374 WAKGYRELIDLLAK-HKND---LDGFKLDVFGNG--------EDAYEVQSAAKRLDLNLN-FQKGRDHADDSLHG--YKV 438 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~-l~~~---~~~~~LvIvG~g--------~~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~--aDv 438 (612)
...|.+..++++-+ +..+ .++-.+-|+|.- .|.++++++.++.|+++. .++.-...+++-+. |.+
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~~A~~ 210 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRSIPKAQF 210 (427)
T ss_pred cccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcE
Confidence 34788887777643 3221 223457777742 345889999999999953 34444455655554 444
Q ss_pred EEeccCCCcchHHHHHHH--HcCCcEEeeC-CC-CccccccCCcEEecCCHHHHHHHHHHHHh
Q 007215 439 FINPSISDVLCTATAEAL--AMGKFVICAD-HP-SNEFFRSFPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAM--A~G~PVVas~-~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll~ 497 (612)
-|..+. ..+..+.+.| -+|+|.+..+ .+ |. .+.+++.++|.+++.
T Consensus 211 niv~~~--~~g~~~a~~L~~~~giP~i~~~~~P~G~------------~~t~~~l~~i~~~~g 259 (427)
T cd01971 211 NLVLSP--WVGLEFAQHLEEKYGQPYIHSPTLPIGA------------KATAEFLRQVAKFAG 259 (427)
T ss_pred EEEEcH--hhHHHHHHHHHHHhCCceEecCCCccCH------------HHHHHHHHHHHHHhC
Confidence 444332 2456677777 4799998764 22 22 234556666666663
No 236
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=36.80 E-value=2.4e+02 Score=29.85 Aligned_cols=119 Identities=11% Similarity=0.111 Sum_probs=67.2
Q ss_pred cCCeEEEeCh---hhhccC-CCcEEEeCCCCCCCCCCCc----cchhhhhhcc--CCCCcEEEEEeccCCccCHHHHHHH
Q 007215 315 YCDKVLRLSA---ATQDLP-KSVICNVHGVNPKFLQIGE----KVATDREQGQ--QAFSKGAYFLGKMVWAKGYRELIDL 384 (612)
Q Consensus 315 ~ad~vI~~S~---~~~~~~-~~~i~vinGVd~~~f~~~~----~~~~~~~~~~--~~~~~~il~vGrl~~~Kg~~~Li~A 384 (612)
++|.+++=.. ...++. ...+.||||-+. ..+|.. .-...+.+|. .-+...|.|+|-.. .=...++.+
T Consensus 97 y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~--~v~~Sl~~~ 173 (338)
T PRK02255 97 LVDIIMARVDRHQTVVELAKYATVPVINGMSD-YNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDAT--QVCVSLMFI 173 (338)
T ss_pred hCcEEEEecCChHHHHHHHHhCCCCEEECCCC-CCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCc--hHHHHHHHH
Confidence 4787755443 223332 256788897654 345542 2223344431 12346889999752 234455666
Q ss_pred HHHhhccCCCeEEEEEecCCCH--HHHH----HHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 385 LAKHKNDLDGFKLDVFGNGEDA--YEVQ----SAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 385 ~~~l~~~~~~~~LvIvG~g~~~--~~l~----~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
+.++ ++++.+++..... +++. +.+++.|..+.+. ++.++.+..+||+.....
T Consensus 174 ~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvy~~~w 231 (338)
T PRK02255 174 ATKM-----GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVT---DDVDEAVKDADFVYTDVW 231 (338)
T ss_pred HHhC-----CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEE---cCHHHHhCCCCEEEEccc
Confidence 6554 5789999864221 2232 3344456555543 566789999998877653
No 237
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.52 E-value=3.2e+02 Score=27.70 Aligned_cols=111 Identities=9% Similarity=0.018 Sum_probs=67.8
Q ss_pred ccCCccCHHHHHHHHHHhhccCCCeEEEEEecCC-----------CH---HHHHHHHHHcCCceEE-ecCCCCHHHHHhc
Q 007215 371 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGE-----------DA---YEVQSAAKRLDLNLNF-QKGRDHADDSLHG 435 (612)
Q Consensus 371 rl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~-----------~~---~~l~~~~~~l~l~v~f-~g~~~~~~~ll~~ 435 (612)
..+.-..-+.+++..+.+++. ++.++..|.-. .. +.+.+..+++|+.+.- .-...+.+.+...
T Consensus 21 GPC~vEs~e~~~~~a~~~~~~--g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~ 98 (250)
T PRK13397 21 GPCSIESYDHIRLAASSAKKL--GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY 98 (250)
T ss_pred ccCccCCHHHHHHHHHHHHHc--CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc
Confidence 455556777778877776654 56677776422 12 5666677888866321 2222233344555
Q ss_pred cceEEeccCCCcchHHHHHHH-HcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHh
Q 007215 436 YKVFINPSISDVLCTATAEAL-AMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 436 aDv~V~PS~~E~fgl~llEAM-A~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~ 497 (612)
+|++=.||.. ..-..+++++ ..|+||+.++.- ..+++++..+++.+.+
T Consensus 99 vdilqIgs~~-~~n~~LL~~va~tgkPVilk~G~-------------~~t~~e~~~A~e~i~~ 147 (250)
T PRK13397 99 LDVIQVGARN-MQNFEFLKTLSHIDKPILFKRGL-------------MATIEEYLGALSYLQD 147 (250)
T ss_pred CCEEEECccc-ccCHHHHHHHHccCCeEEEeCCC-------------CCCHHHHHHHHHHHHH
Confidence 7999889863 3345677776 579999987431 1355666677776664
No 238
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.92 E-value=6.4e+02 Score=27.58 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=65.7
Q ss_pred CccCHHHHHHHHH-Hhhcc----CCCeEEEEEecCC---C-HHHHHHHHHHcCCceEEecC------------------C
Q 007215 374 WAKGYRELIDLLA-KHKND----LDGFKLDVFGNGE---D-AYEVQSAAKRLDLNLNFQKG------------------R 426 (612)
Q Consensus 374 ~~Kg~~~Li~A~~-~l~~~----~~~~~LvIvG~g~---~-~~~l~~~~~~l~l~v~f~g~------------------~ 426 (612)
...|.+..++++- .+... ..+-.+-|+|.-. + ..+++++.++.|+++..++. -
T Consensus 135 ~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg 214 (435)
T cd01974 135 HITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGG 214 (435)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCC
Confidence 4478888887774 33221 1122455565322 2 58899999999999654321 2
Q ss_pred CCHHHHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHHhCC
Q 007215 427 DHADDSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEALAND 499 (612)
Q Consensus 427 ~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll~~~ 499 (612)
...+++-+..+.-++.....-.+..+.+.|. +|+|.+....+ |. .+.+++-++|.+++..+
T Consensus 215 ~~~~~i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~~~~~~p~G~------------~~t~~~l~~l~~~~g~~ 278 (435)
T cd01974 215 TTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETLNMPIGV------------AATDEFLMALSELTGKP 278 (435)
T ss_pred CCHHHHHhhccCcEEEEECccccHHHHHHHHHHhCCCeeecCCCcCh------------HHHHHHHHHHHHHhCCC
Confidence 2344555554433433333334556677765 79998876433 22 34567778888887433
No 239
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=34.84 E-value=2.9e+02 Score=30.60 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=61.8
Q ss_pred CCccCHHHHHHHHH-Hhhcc-CCCeEEEEEecC---CCHHHHHHHHHHcCCceEEecC------------------CCCH
Q 007215 373 VWAKGYRELIDLLA-KHKND-LDGFKLDVFGNG---EDAYEVQSAAKRLDLNLNFQKG------------------RDHA 429 (612)
Q Consensus 373 ~~~Kg~~~Li~A~~-~l~~~-~~~~~LvIvG~g---~~~~~l~~~~~~l~l~v~f~g~------------------~~~~ 429 (612)
....|++..++++- .+... .++-.+-|+|.- .|.++++++.++.|+++..+.. -...
T Consensus 139 s~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~~d~~~~d~~~~~~~~~~~~g~~~~ 218 (454)
T cd01973 139 SMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANILMDTEDFDSPMLPDKSAVTHGNTTI 218 (454)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEeeccccccCCCCCcccccCCCCCCH
Confidence 34468888887773 33221 233356666632 2348899999999999654421 1233
Q ss_pred HHHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 430 DDSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 430 ~~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
+++-+..+.-++.....-.+..+.|+|. +|+|.+..+.+ |. .+.+++-+.|.+++
T Consensus 219 ~~i~~~~~A~~niv~~~~~~~~~A~~Le~~fGiPyi~~~~P~G~------------~~T~~~l~~ia~~~ 276 (454)
T cd01973 219 EDIADSANAIATIALARYEGGKAAEFLQKKFDVPAILGPTPIGI------------KNTDAFLQNIKELT 276 (454)
T ss_pred HHHHHhhhCcEEEEEChhhhHHHHHHHHHHHCCCeeccCCCcCh------------HHHHHHHHHHHHHH
Confidence 3444443332222222224566777774 79998865433 22 23455666666666
No 240
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=34.71 E-value=6.2e+02 Score=27.36 Aligned_cols=136 Identities=11% Similarity=0.007 Sum_probs=76.0
Q ss_pred hhccCCCCcEEEEEeccCCcc---C---HHHHHHHHHHhhccC-CCeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCC
Q 007215 356 EQGQQAFSKGAYFLGKMVWAK---G---YRELIDLLAKHKNDL-DGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRD 427 (612)
Q Consensus 356 ~~~~~~~~~~il~vGrl~~~K---g---~~~Li~A~~~l~~~~-~~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~ 427 (612)
.+.++.++++|+|.-...... | ....++..+...... .+..+++ =..+.. ..... ..+..-.+..+-...
T Consensus 201 ~~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~-k~Hp~is~~~~~-~~~~~~~~~~vs~~~ 278 (388)
T COG1887 201 ALPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLGENEYVIIV-KPHPLISDKIDK-RYALDDFVLDVSDNA 278 (388)
T ss_pred hcCCcccCceEEecCCccCCccccchhhhhhhhhHHHHHHhhccCCeEEEE-ecChhhhhhhhh-hhhccceeEecccch
Confidence 344556688999987776654 2 333333222222222 3454444 333322 11111 111111122223334
Q ss_pred CHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc---------cccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 428 HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN---------EFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 428 ~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~---------~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
+..+++..+|++|.= ++.+..|+|..-+|||---.-.. .......-|-++.+.+++.++|.....+
T Consensus 279 di~dll~~sDiLITD-----ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~~ 353 (388)
T COG1887 279 DINDLLLVSDILITD-----YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDED 353 (388)
T ss_pred hHHHHHhhhCEEEee-----chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhcc
Confidence 444999999999764 56789999999999998733221 1112223355668889999999988853
No 241
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=34.67 E-value=3.5e+02 Score=28.61 Aligned_cols=120 Identities=9% Similarity=0.071 Sum_probs=69.5
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCcc----chhhhhhcc-CCCCcEEEEEeccCCccCHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGEK----VATDREQGQ-QAFSKGAYFLGKMVWAKGYRELIDLL 385 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~~----~~~~~~~~~-~~~~~~il~vGrl~~~Kg~~~Li~A~ 385 (612)
++|.|+.-... ..++. ...+.|||+-+ +..+|... -...+.+|. .-....+.|+|-.. ..=...++.++
T Consensus 100 y~D~Iv~R~~~~~~~~~~a~~~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~-~~v~~Sl~~~~ 177 (336)
T PRK03515 100 MYDGIQYRGYGQEIVETLAEYAGVPVWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDAR-NNMGNSLLEAA 177 (336)
T ss_pred hCcEEEEEeCChHHHHHHHHhCCCCEEECCC-CCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCc-CcHHHHHHHHH
Confidence 47887766542 23332 25677889855 34565422 223344431 12346889999642 22356777777
Q ss_pred HHhhccCCCeEEEEEecCCCH--HHH----HHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 386 AKHKNDLDGFKLDVFGNGEDA--YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 386 ~~l~~~~~~~~LvIvG~g~~~--~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
..+ ++.+.+++..... +++ ++.+++.|..+.+. ++.++.+..+|++...+.
T Consensus 178 ~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~---~d~~ea~~~aDvvytd~W 234 (336)
T PRK03515 178 ALT-----GLDLRLVAPKACWPEAALVTECRALAQKNGGNITLT---EDIAEGVKGADFIYTDVW 234 (336)
T ss_pred HHc-----CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHhCCCCEEEecCc
Confidence 765 6789998853321 222 33445556555543 566788999999877653
No 242
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=34.50 E-value=5.1e+02 Score=26.31 Aligned_cols=39 Identities=15% Similarity=0.013 Sum_probs=25.3
Q ss_pred cceEEeccCCCcchHHHHHHHHcCCcEEee-CCCCcccccc
Q 007215 436 YKVFINPSISDVLCTATAEALAMGKFVICA-DHPSNEFFRS 475 (612)
Q Consensus 436 aDv~V~PS~~E~fgl~llEAMA~G~PVVas-~~gg~~~i~~ 475 (612)
-|+++....... ..++.||..+|.|||+- |....+..++
T Consensus 158 Pd~iii~d~~~~-~~ai~Ea~kl~IPiIaivDTn~dp~~Id 197 (258)
T PRK05299 158 PDALFVVDPNKE-HIAVKEARKLGIPVVAIVDTNCDPDGVD 197 (258)
T ss_pred CCEEEEeCCCcc-HHHHHHHHHhCCCEEEEeeCCCCCcccc
Confidence 355555443322 37899999999999998 4444444443
No 243
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.00 E-value=6.4e+02 Score=27.28 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=62.5
Q ss_pred ccCHHHHHHHHH-Hhhcc-CC----CeEEEEEecC---CCHHHHHHHHHHcCCceE-EecCCCCHHHHHhccceEEeccC
Q 007215 375 AKGYRELIDLLA-KHKND-LD----GFKLDVFGNG---EDAYEVQSAAKRLDLNLN-FQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 375 ~Kg~~~Li~A~~-~l~~~-~~----~~~LvIvG~g---~~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
..|.+..++++- .+... .+ +-.+-|+|.- .+..+++++.++.|+++. .+..-...+++.+..+..++-..
T Consensus 133 ~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~ 212 (410)
T cd01968 133 NLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAHRAKLNVVQ 212 (410)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhhhCcEEEEE
Confidence 467777766653 33211 11 3457778743 234789999999999954 34444455555555443333222
Q ss_pred CCcchHHHHHHH--HcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 445 SDVLCTATAEAL--AMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 445 ~E~fgl~llEAM--A~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
....+..+.+.| -+|+|.+....-|. ...+++-++|.+++
T Consensus 213 ~~~~~~~~a~~L~~~fGip~~~~~p~G~------------~~t~~~l~~ia~~~ 254 (410)
T cd01968 213 CSKSMIYLARKMEEKYGIPYIEVSFYGI------------RDTSKSLRNIAELL 254 (410)
T ss_pred chhHHHHHHHHHHHHhCCCeEecCcCcH------------HHHHHHHHHHHHHh
Confidence 233455667777 47999885310011 34566667777776
No 244
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=33.70 E-value=2.6e+02 Score=27.36 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=57.4
Q ss_pred CcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH--HHHHHHHHHcCCc--eEEecCCCCHHHHHhccce
Q 007215 363 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKV 438 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv 438 (612)
..++++.|. -..|=|-++-| +.|....-++.+...|+.... +......+.++.. +...... +....+|+
T Consensus 50 ~~v~vlcG~--GnNGGDG~VaA-R~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~----~~~~~~dv 122 (203)
T COG0062 50 RRVLVLCGP--GNNGGDGLVAA-RHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELE----DEPESADV 122 (203)
T ss_pred CEEEEEECC--CCccHHHHHHH-HHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccc----cccccCCE
Confidence 346777774 34566665543 455555557888888865532 3333333334432 2222111 15677777
Q ss_pred EEec--------cCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 439 FINP--------SISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 439 ~V~P--------S~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
.|=. ...|++...+-..-+.|+|||+-|.++
T Consensus 123 IVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 123 IVDALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred EEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 7632 234666655555556999999999984
No 245
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=33.33 E-value=2.5e+02 Score=30.66 Aligned_cols=92 Identities=9% Similarity=-0.049 Sum_probs=50.8
Q ss_pred EEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCcccccc
Q 007215 396 KLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRS 475 (612)
Q Consensus 396 ~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~ 475 (612)
++.|+.... +..++++++++- .... ..++..+.+..||+.|+.+-...+ +.- ..+.-+.|.+.-|.+-...|..
T Consensus 207 ~I~V~nRt~--~ra~~La~~~~~-~~~~-~~~~l~~~l~~aDiVI~aT~a~~~-vi~-~~~~~~~~~~~iDLavPRdidp 280 (414)
T PRK13940 207 QIMLANRTI--EKAQKITSAFRN-ASAH-YLSELPQLIKKADIIIAAVNVLEY-IVT-CKYVGDKPRVFIDISIPQALDP 280 (414)
T ss_pred EEEEECCCH--HHHHHHHHHhcC-CeEe-cHHHHHHHhccCCEEEECcCCCCe-eEC-HHHhCCCCeEEEEeCCCCCCCc
Confidence 577777643 445666666641 1111 123345789999999998654322 111 3344678998888875444333
Q ss_pred ---CCcEEecCCHHHHHHHHH
Q 007215 476 ---FPNCLTYKTSEDFVARVK 493 (612)
Q Consensus 476 ---~~~g~l~~d~~~la~aI~ 493 (612)
.-.|....|.++|.+.+.
T Consensus 281 ~v~~l~~v~l~~iDdl~~i~~ 301 (414)
T PRK13940 281 KLGELEQNVYYCVDDINAVIE 301 (414)
T ss_pred cccCcCCeEEEeHHHHHHHHH
Confidence 212333345555554444
No 246
>PLN02342 ornithine carbamoyltransferase
Probab=33.20 E-value=4.1e+02 Score=28.31 Aligned_cols=117 Identities=12% Similarity=0.133 Sum_probs=68.6
Q ss_pred cCCeEEEeCh---hhhccC-CCcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSA---ATQDLP-KSVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~---~~~~~~-~~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.|+.=.. ...++. ...+.|||+-+. ..+|.. .-...+.+|.- +...|.|+|-.. .=...++.++.
T Consensus 140 y~D~IviR~~~~~~~~~la~~~~vPVINA~~~-~~HPtQaLaDl~Ti~e~~G~l-~glkva~vGD~~--nva~Sli~~~~ 215 (348)
T PLN02342 140 YNDIIMARVFAHQDVLDLAEYSSVPVINGLTD-YNHPCQIMADALTIIEHIGRL-EGTKVVYVGDGN--NIVHSWLLLAA 215 (348)
T ss_pred hCCEEEEeCCChHHHHHHHHhCCCCEEECCCC-CCChHHHHHHHHHHHHHhCCc-CCCEEEEECCCc--hhHHHHHHHHH
Confidence 4788876543 223332 256788897553 456652 22233444432 246788999642 23455666666
Q ss_pred HhhccCCCeEEEEEecCCCH--HHHHHHHHHcCC-ceEEecCCCCHHHHHhccceEEecc
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDL-NLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l-~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
.+ ++++.+++..... +++.+.+++.+. .+.+ .++.++.+..+||+...+
T Consensus 216 ~~-----G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~---~~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 216 VL-----PFHFVCACPKGYEPDAKTVEKARAAGISKIEI---TNDPAEAVKGADVVYTDV 267 (348)
T ss_pred Hc-----CCEEEEECCcccccCHHHHHHHHHhCCCcEEE---EcCHHHHhCCCCEEEECC
Confidence 65 5789999864322 344444555553 3433 366678999999988764
No 247
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=32.74 E-value=2.4e+02 Score=28.79 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=48.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
+++++..+-+. +.+..++.+++++.. ....+.++++..+|+++..+-.+...-...+++..|++|++...+
T Consensus 30 ~~~el~aV~dr-~~~~a~~~a~~~g~~----~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 30 PGLTLSAVAVR-DPQRHADFIWGLRRP----PPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred CCeEEEEEECC-CHHHHHHHHHhcCCC----cccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecch
Confidence 56777655543 344456666665521 224567788888998888876666666678889999999976444
No 248
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.71 E-value=2.5e+02 Score=27.61 Aligned_cols=85 Identities=11% Similarity=0.060 Sum_probs=44.5
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCH--HHHHHHHHHcCCc-eEE--ecCCCC-------HHHHHhcc--------c-eE
Q 007215 381 LIDLLAKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLN-LNF--QKGRDH-------ADDSLHGY--------K-VF 439 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l~-v~f--~g~~~~-------~~~ll~~a--------D-v~ 439 (612)
.+++++.+.. -++.++-.--++ +...+..+..|.+ +.| +|-.++ +...++.| | +|
T Consensus 109 vv~aL~al~a----~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiF 184 (238)
T COG3473 109 VVEALNALGA----QRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIF 184 (238)
T ss_pred HHHHHHhhCc----ceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEE
Confidence 4566666533 245555432221 3344455666776 555 333332 22444444 3 67
Q ss_pred EeccCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 440 INPSISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 440 V~PS~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
+.....-+|+..-.==-..|+|||.|+...
T Consensus 185 iSCTnlRt~eii~~lE~~~G~PVvsSN~AT 214 (238)
T COG3473 185 ISCTNLRTFEIIEKLERDTGVPVVSSNQAT 214 (238)
T ss_pred EEeeccccHHHHHHHHHHhCCceeeccHHH
Confidence 766555555433222248999999998753
No 249
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=32.68 E-value=2.6e+02 Score=22.33 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=35.0
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecC-CCH-HHHHHHHHHcCCc
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNG-EDA-YEVQSAAKRLDLN 419 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g-~~~-~~l~~~~~~l~l~ 419 (612)
+.|++.|.-+ ....+.+-+++.++.++.|+.. +|-|+. ... ....+.+++.++.
T Consensus 4 ~rVli~GgR~-~~D~~~i~~~Ld~~~~~~~~~~-lvhGga~~GaD~iA~~wA~~~gv~ 59 (71)
T PF10686_consen 4 MRVLITGGRD-WTDHELIWAALDKVHARHPDMV-LVHGGAPKGADRIAARWARERGVP 59 (71)
T ss_pred CEEEEEECCc-cccHHHHHHHHHHHHHhCCCEE-EEECCCCCCHHHHHHHHHHHCCCe
Confidence 4555665533 3488889999999988888764 555654 233 3344556777766
No 250
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=32.55 E-value=3.4e+02 Score=29.61 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCC--CcchHH-HHHHHHcCCcEEeeCCCCcc
Q 007215 395 FKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSIS--DVLCTA-TAEALAMGKFVICADHPSNE 471 (612)
Q Consensus 395 ~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~--E~fgl~-llEAMA~G~PVVas~~gg~~ 471 (612)
-++.|++. ..+.-++++++++..+ ...++..+++..||+++..+-. ...+.. +-+|+.--...+.-|.+-..
T Consensus 203 ~~i~IaNR--T~erA~~La~~~~~~~---~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 203 KKITIANR--TLERAEELAKKLGAEA---VALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred CEEEEEcC--CHHHHHHHHHHhCCee---ecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 45677764 4466677888887321 2234555899999988876322 223333 34445554556777777655
Q ss_pred ccccCC---cEEecCCHHHHHHHHHHHH
Q 007215 472 FFRSFP---NCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 472 ~i~~~~---~g~l~~d~~~la~aI~~ll 496 (612)
.+.... +|..+.|.++|.....+-+
T Consensus 278 die~~v~~l~~v~l~~iDDL~~iv~~n~ 305 (414)
T COG0373 278 DVEPEVGELPNVFLYTIDDLEEIVEENL 305 (414)
T ss_pred CCCccccCcCCeEEEehhhHHHHHHHhH
Confidence 554432 2333344555544444333
No 251
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=32.29 E-value=1.5e+02 Score=24.25 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=44.4
Q ss_pred cEEEEEec-cCC--ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCC-HHHHHhccceE
Q 007215 364 KGAYFLGK-MVW--AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDH-ADDSLHGYKVF 439 (612)
Q Consensus 364 ~~il~vGr-l~~--~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~-~~~ll~~aDv~ 439 (612)
++++++.. -++ .+-+..|.+..+++.+ ..++.++.+....+.++.++..++.+..-..+....+ ..++.+.+++-
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 45544433 332 2344455555555553 3589999999888888899988888666333333322 23677777654
Q ss_pred Eec
Q 007215 440 INP 442 (612)
Q Consensus 440 V~P 442 (612)
-.|
T Consensus 82 ~iP 84 (95)
T PF13905_consen 82 GIP 84 (95)
T ss_dssp SSS
T ss_pred cCC
Confidence 444
No 252
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.95 E-value=2.1e+02 Score=21.05 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=41.0
Q ss_pred eEEEEEec--CCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 395 FKLDVFGN--GEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 395 ~~LvIvG~--g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
..+.+.|. +.+...+++++..+|..+. .... ..++.+|.++....- ...+|...|+|||..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~--~~~~------~~~thvI~~~~~~~~--~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVT--SSVS------KKTTHVIVGSDAGPK--KLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEe--cccc------CCceEEEECCCCCch--HHHHHHHcCCeEecH
Confidence 46778887 4677899999999886533 2222 456677776543221 278888999999864
No 253
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=31.85 E-value=1.6e+02 Score=30.08 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=44.5
Q ss_pred CCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHh--cc------chhHHHHHHHHHHHHHHh--cCCe
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKRE--KN------GALQAFFVKHINNWVTRA--YCDK 318 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~--~~------~~~~~~~~~~i~~~~~~~--~ad~ 318 (612)
-+.||+|+.+--..+..+ ...+.+.+ |.+.+=|..+.+--... .. ..++....+.++.+.... .||.
T Consensus 171 P~advyHsvstGyAgl~g--~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~ 248 (268)
T PF11997_consen 171 PKADVYHSVSTGYAGLLG--ALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADR 248 (268)
T ss_pred CCCCEEecCCccHHHHHH--HHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 367999996554444443 55666667 99999999986422111 11 112222333333322222 3899
Q ss_pred EEEeChhhhc
Q 007215 319 VLRLSAATQD 328 (612)
Q Consensus 319 vI~~S~~~~~ 328 (612)
|+++++..++
T Consensus 249 I~~l~~~n~~ 258 (268)
T PF11997_consen 249 ITPLYEYNRE 258 (268)
T ss_pred ecccchhhHH
Confidence 9999986544
No 254
>PRK06683 hypothetical protein; Provisional
Probab=31.41 E-value=1.9e+02 Score=23.75 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhhccCCCeEEEEEecCCCH---HHHHHHHHHcCCceEEec
Q 007215 377 GYRELIDLLAKHKNDLDGFKLDVFGNGEDA---YEVQSAAKRLDLNLNFQK 424 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~~~~~LvIvG~g~~~---~~l~~~~~~l~l~v~f~g 424 (612)
|....++++++ ...+++|+...-+. +.+..+++.+++++.++.
T Consensus 15 G~~~v~kaik~-----gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 15 GHKRTLEAIKN-----GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred cHHHHHHHHHc-----CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 66666676654 35788888765544 556667788887765544
No 255
>PRK05380 pyrG CTP synthetase; Validated
Probab=30.94 E-value=8.3e+02 Score=27.67 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHhhccCCCeEEEEEecCCCH--------HHHHHHHHHcCCc--eEEecCCC--C--HHHHHhccceEEec
Q 007215 377 GYRELIDLLAKHKNDLDGFKLDVFGNGEDA--------YEVQSAAKRLDLN--LNFQKGRD--H--ADDSLHGYKVFINP 442 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~~~~~LvIvG~g~~~--------~~l~~~~~~l~l~--v~f~g~~~--~--~~~ll~~aDv~V~P 442 (612)
++..--+...++......+++-++|.-.+. +.|+......+.. +.++.... + ..+.+..+|-+|+|
T Consensus 271 ~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlp 350 (533)
T PRK05380 271 DLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVP 350 (533)
T ss_pred CHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEec
Confidence 333333333444332346899999974332 3344434444444 44544322 2 33788999988887
Q ss_pred cCC-----CcchHHHHHHHHcCCcEEeeCCCC
Q 007215 443 SIS-----DVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 443 S~~-----E~fgl~llEAMA~G~PVVas~~gg 469 (612)
--+ ++.-..+-+|...|+|+++.-.|.
T Consensus 351 GGfG~~~~~g~i~~i~~a~e~~iPiLGIClGm 382 (533)
T PRK05380 351 GGFGERGIEGKILAIRYARENNIPFLGICLGM 382 (533)
T ss_pred CCCCccccccHHHHHHHHHHCCCcEEEEchHH
Confidence 522 222334666778899999887765
No 256
>PRK04531 acetylglutamate kinase; Provisional
Probab=30.51 E-value=1.8e+02 Score=31.65 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=63.3
Q ss_pred CCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeE-EEEEecCCCHHHHHHHHHHcCCceEEecC--CCCHH--HHHhcc
Q 007215 362 FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFK-LDVFGNGEDAYEVQSAAKRLDLNLNFQKG--RDHAD--DSLHGY 436 (612)
Q Consensus 362 ~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~-LvIvG~g~~~~~l~~~~~~l~l~v~f~g~--~~~~~--~ll~~a 436 (612)
.+..++-+|.-.-....+.+++.+..+.+. +.+ +++-|+|+. +.++.++.|++-+|..+ +.+.+ ++...+
T Consensus 36 ~~~~VIKiGG~~l~~~~~~l~~dla~L~~~--G~~~VlVHGggpq---I~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~ 110 (398)
T PRK04531 36 ERFAVIKVGGAVLRDDLEALASSLSFLQEV--GLTPIVVHGAGPQ---LDAELDAAGIEKETVNGLRVTSPEALAIVRKV 110 (398)
T ss_pred CcEEEEEEChHHhhcCHHHHHHHHHHHHHC--CCcEEEEECCCHH---HHHHHHHcCCCcEEECCEecCCHHHHHHHHHH
Confidence 345666666532224567888888877664 344 555576654 55677788988666543 33333 222221
Q ss_pred ceEEeccCCCcchHH--HHHHHHcCC-cEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHh
Q 007215 437 KVFINPSISDVLCTA--TAEALAMGK-FVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALA 497 (612)
Q Consensus 437 Dv~V~PS~~E~fgl~--llEAMA~G~-PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~ 497 (612)
-.-++ ..++ +-+++..|. |||+ ..|- ..+|..+ -|.+++|.++...|.
T Consensus 111 l~~vn------~~lv~~I~~~L~~g~IPVls-plg~------~~~G~~~NvnaD~vA~~LA~aL~ 162 (398)
T PRK04531 111 FQRSN------LDLVEAVESSLRAGSIPVIA-SLGE------TPSGQILNINADVAANELVSALQ 162 (398)
T ss_pred HHHHH------HHHHHHHHHHHHCCCEEEEe-CcEE------CCCCcEEEECHHHHHHHHHHHcC
Confidence 11111 1211 555777886 5553 3331 1223333 567777777777663
No 257
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=29.84 E-value=92 Score=28.50 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHHH-cCCcEEeeCCC---Ccccccc
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEALA-MGKFVICADHP---SNEFFRS 475 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAMA-~G~PVVas~~g---g~~~i~~ 475 (612)
+.+++.++++|+.+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|++ .++|+|=-... ..|.+..
T Consensus 32 ~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~RE~fR~ 111 (140)
T PF01220_consen 32 QKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHAREEFRH 111 (140)
T ss_dssp HHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGGS-GGGG
T ss_pred HHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 445566777777777766655555 555544 3 88899877777889999974 68899876443 2343333
Q ss_pred ------CCcEEec-CCHHHHHHHHHHHH
Q 007215 476 ------FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 476 ------~~~g~l~-~d~~~la~aI~~ll 496 (612)
...|.+. --.+...-||..++
T Consensus 112 ~S~~s~~~~g~I~G~G~~gY~lAl~al~ 139 (140)
T PF01220_consen 112 HSVISPVAVGVISGFGADGYLLALEALV 139 (140)
T ss_dssp --SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccEEEEEeCCHHHHHHHHHHHh
Confidence 2356666 44556666666554
No 258
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=29.57 E-value=5.4e+02 Score=26.26 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=59.3
Q ss_pred EEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-----------HHHHHHHHHcCCceEEecCCCCHHHHHh
Q 007215 366 AYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-----------YEVQSAAKRLDLNLNFQKGRDHADDSLH 434 (612)
Q Consensus 366 il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-----------~~l~~~~~~l~l~v~f~g~~~~~~~ll~ 434 (612)
-+|+|.-...+.++.+.+++....+-.=.+-+.+...|+.. ....+++.++|-++.=.....+.
T Consensus 117 ~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~----- 191 (265)
T COG1830 117 TVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP----- 191 (265)
T ss_pred EEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh-----
Confidence 35777776766666666666655443322334444444432 11222444555442222222222
Q ss_pred ccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc---c--------ccccCCcEEec-------CCHHHHHHHHHHHH
Q 007215 435 GYKVFINPSISDVLCTATAEALAMGKFVICADHPSN---E--------FFRSFPNCLTY-------KTSEDFVARVKEAL 496 (612)
Q Consensus 435 ~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~---~--------~i~~~~~g~l~-------~d~~~la~aI~~ll 496 (612)
|.|--++ -+||+|||.+--+.. + .+..+..|..+ .+|+.+.++|..+.
T Consensus 192 -----------e~F~~vv---~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Iv 257 (265)
T COG1830 192 -----------ESFRRVV---AACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIV 257 (265)
T ss_pred -----------HHHHHHH---HhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHh
Confidence 3443322 367899998854422 1 22234445433 78899999999887
Q ss_pred hC
Q 007215 497 AN 498 (612)
Q Consensus 497 ~~ 498 (612)
-+
T Consensus 258 he 259 (265)
T COG1830 258 HE 259 (265)
T ss_pred cC
Confidence 43
No 259
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=29.35 E-value=1.2e+02 Score=29.84 Aligned_cols=103 Identities=11% Similarity=0.037 Sum_probs=62.6
Q ss_pred CCeEEEEEecCCCH-----HHHHHHHHHcCCc-eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 393 DGFKLDVFGNGEDA-----YEVQSAAKRLDLN-LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 393 ~~~~LvIvG~g~~~-----~~l~~~~~~l~l~-v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
|+-.|+|-|.|+.. ..+-.++...|.. +...|.+.|.+++ ..-|+-|+.--.-+.+.+--..-.-.+||.+..
T Consensus 70 ~GdVLVid~~g~~~~A~~Gd~la~~a~~~G~~GvVidG~vRDv~~l-~el~~pv~a~~~~p~~~~k~~~geinvpV~~gG 148 (210)
T COG0684 70 PGDVLVIDGGGDLRRALWGDLLATLAKVRGWAGVVIDGAVRDVDEL-RELDFPVFARGVTPRGATKRGIGEVNVPVTCGG 148 (210)
T ss_pred CCCEEEEeCCCCcceeehHHHHHHHHHHcCccEEEEeceeechHHH-hhcCCCeEeccccCCCCCcCCcceecccEEECC
Confidence 45568888888743 6677788888888 6678888888844 444433332111122222223356678888877
Q ss_pred CCC--ccccccCCcEEec---CCHHHHHHHHHHHH
Q 007215 467 HPS--NEFFRSFPNCLTY---KTSEDFVARVKEAL 496 (612)
Q Consensus 467 ~gg--~~~i~~~~~g~l~---~d~~~la~aI~~ll 496 (612)
..- -+.+..+.+|.++ ...++.++.-.+..
T Consensus 149 v~v~PGD~vvgD~dGvVVvp~~~~~ev~~~A~~~~ 183 (210)
T COG0684 149 VTVNPGDIVVADADGVVVVPAELADEVAEAAKEIK 183 (210)
T ss_pred EEECCCCEEEEcCCceEEeccchhHHHHHHHHHHH
Confidence 653 4677888889887 44444444433333
No 260
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=29.33 E-value=1.7e+02 Score=26.66 Aligned_cols=90 Identities=17% Similarity=0.319 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc-----ceEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Ccccccc
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY-----KVFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFRS 475 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a-----Dv~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~~ 475 (612)
+.+++.+.+++.++.|+..-.+.+ +.++.| ++.++|.-+--.+.++-+|+ +..+|+|=-... ..|++..
T Consensus 32 ~~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaRE~FRh 111 (146)
T COG0757 32 ADLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAREEFRH 111 (146)
T ss_pred HHHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhcccccc
Confidence 445566777787777766655555 555554 28999988888899999996 567899865433 3555544
Q ss_pred ------CCcEEec-CCHHHHHHHHHHHH
Q 007215 476 ------FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 476 ------~~~g~l~-~d~~~la~aI~~ll 496 (612)
-..|.++ --+....-++..+.
T Consensus 112 hS~~s~~a~GvI~GlG~~GY~lAl~~l~ 139 (146)
T COG0757 112 HSYTSPVAKGVICGLGAQGYLLALRALV 139 (146)
T ss_pred cccccchhceeEecCcHHHHHHHHHHHH
Confidence 2345566 44555555555544
No 261
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=29.29 E-value=3.7e+02 Score=25.13 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=56.7
Q ss_pred CCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH----HHHHHHHHHcCCceEEecCCCCHH--HHHh
Q 007215 361 AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA----YEVQSAAKRLDLNLNFQKGRDHAD--DSLH 434 (612)
Q Consensus 361 ~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~----~~l~~~~~~l~l~v~f~g~~~~~~--~ll~ 434 (612)
..+++++++|. -.+|-+-+. +.+.|.+...++.+.+++..+.. ..-.+++++.+ +.+.....+.+ ..+.
T Consensus 24 ~~~~v~il~G~--GnNGgDgl~-~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~ 98 (169)
T PF03853_consen 24 KGPRVLILCGP--GNNGGDGLV-AARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG--IKIIELDSDEDLSEALE 98 (169)
T ss_dssp TT-EEEEEE-S--SHHHHHHHH-HHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT---EEESSCCGSGGGHHGS
T ss_pred CCCeEEEEECC--CCChHHHHH-HHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC--CcEeeccccchhhcccc
Confidence 34567788886 355666554 44556666566777778765443 23334456666 44444333322 4566
Q ss_pred ccceEEeccC--------CCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 435 GYKVFINPSI--------SDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 435 ~aDv~V~PS~--------~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
.+|+.|=.-. .+..--.+-.+=.++.|||+-|.++
T Consensus 99 ~~dlIIDal~G~G~~~~l~~~~~~~i~~iN~~~~~viAiDiPS 141 (169)
T PF03853_consen 99 PADLIIDALFGTGFSGPLRGPIAELIDWINASRAPVIAIDIPS 141 (169)
T ss_dssp CESEEEEES-STTGGSCGSTCHHHHHHHHHHHCSEEEEESS-T
T ss_pred cccEEEEecccCCCCCCcCHHHHHHHHHHhccCCcEEEecCCC
Confidence 7887774321 1223333444456799999999984
No 262
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=29.03 E-value=4.2e+02 Score=28.14 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=55.7
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccc--eEEe
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYK--VFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aD--v~V~ 441 (612)
..+..+|. .. | ...++++..+.+ +++++-+-+ .+.+..++.++++|.. .+.+.++++...| +++.
T Consensus 4 ~rVgViG~-~~--G-~~h~~al~~~~~---~~eLvaV~d-~~~erA~~~A~~~gi~-----~y~~~eell~d~Di~~V~i 70 (343)
T TIGR01761 4 QSVVVCGT-RF--G-QFYLAAFAAAPE---RFELAGILA-QGSERSRALAHRLGVP-----LYCEVEELPDDIDIACVVV 70 (343)
T ss_pred cEEEEEeH-HH--H-HHHHHHHHhCCC---CcEEEEEEc-CCHHHHHHHHHHhCCC-----ccCCHHHHhcCCCEEEEEe
Confidence 45667775 22 3 245667766521 566655554 4456777888888843 3567778887655 4444
Q ss_pred ccCC--CcchHHHHHHHHcCCcEEeeC
Q 007215 442 PSIS--DVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 442 PS~~--E~fgl~llEAMA~G~PVVas~ 466 (612)
|+.. ..-.-.+.+||..|+.|++-.
T Consensus 71 pt~~P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 71 RSAIVGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CCCCCCccHHHHHHHHHhCCCeEEEcC
Confidence 4321 122335778999999999874
No 263
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=28.96 E-value=6.1e+02 Score=26.38 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=69.0
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++. ...+.|||+-+. ..+|.. .-...+.+|.- +...|.|+|- ..+=...++.++.
T Consensus 98 ~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~-~~HPtQaL~Dl~Ti~e~~g~l-~gl~i~~vGd--~~~v~~Sl~~~l~ 173 (304)
T PRK00779 98 YVDAIMIRTFEHETLEELAEYSTVPVINGLTD-LSHPCQILADLLTIYEHRGSL-KGLKVAWVGD--GNNVANSLLLAAA 173 (304)
T ss_pred hCCEEEEcCCChhHHHHHHHhCCCCEEeCCCC-CCChHHHHHHHHHHHHHhCCc-CCcEEEEEeC--CCccHHHHHHHHH
Confidence 47887755442 22332 256788886553 345542 22233444432 2357889997 3345566677776
Q ss_pred HhhccCCCeEEEEEecCCCH--HHHH-HHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YEVQ-SAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~l~-~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
.+ ++++.+++..... +++. ..+++.|..+.+ .++.++.+..+|++...+
T Consensus 174 ~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~---~~d~~~a~~~aDvvy~~~ 225 (304)
T PRK00779 174 LL-----GFDLRVATPKGYEPDPEIVEKIAKETGASIEV---THDPKEAVKGADVVYTDV 225 (304)
T ss_pred Hc-----CCEEEEECCcccCCCHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEecC
Confidence 65 5789999864322 2232 235566655543 367778999999988764
No 264
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=28.82 E-value=2.1e+02 Score=25.67 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=42.5
Q ss_pred CCccCHHH--HHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCC-CCHHHHHhccceE
Q 007215 373 VWAKGYRE--LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGR-DHADDSLHGYKVF 439 (612)
Q Consensus 373 ~~~Kg~~~--Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~-~~~~~ll~~aDv~ 439 (612)
..+|+.|. .+++++...+...+.-+++-|+++... +.+.+++.|..|...+.. ....++...||=|
T Consensus 78 ~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~-~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f 146 (149)
T cd06167 78 SGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVP-LVERLRELGKRVIVVGFEAKTSRELRKAADRF 146 (149)
T ss_pred CcccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHH-HHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence 45676664 447777776655566566666554444 445567778888887877 4444788888743
No 265
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=28.54 E-value=4e+02 Score=28.17 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=68.0
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.=... ..++. ...+.|||+-+. ..+|.. .-..++.+|.- ....|.|+|-+. ..=...++.++.
T Consensus 101 y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~l-~g~~va~vGd~~-~~v~~Sl~~~~~ 177 (331)
T PRK02102 101 MYDGIEYRGFKQEIVEELAKYSGVPVWNGLTD-EWHPTQMLADFMTMKEHFGPL-KGLKLAYVGDGR-NNMANSLMVGGA 177 (331)
T ss_pred cCCEEEEECCchHHHHHHHHhCCCCEEECCCC-CCChHHHHHHHHHHHHHhCCC-CCCEEEEECCCc-ccHHHHHHHHHH
Confidence 57887776553 23332 256778898764 455542 22233344422 246888999763 224556666666
Q ss_pred HhhccCCCeEEEEEecCCCH--HHH----HHHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
.+ ++.+.+++..... +++ ++.+++.|..+.+ .++.++.+..+||+..-.
T Consensus 178 ~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~---~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 178 KL-----GMDVRICAPKELWPEEELVALAREIAKETGAKITI---TEDPEEAVKGADVIYTDV 232 (331)
T ss_pred Hc-----CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEEcC
Confidence 65 5789898853321 222 2334445644443 456778899999887753
No 266
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=28.26 E-value=2.9e+02 Score=29.56 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=57.8
Q ss_pred CccCHHHHHHHHHHhh-c-----cCCCeEEEEEecCC----CHHHHHHHHHHcCCceEEecCC-CCHHHHHh--ccceEE
Q 007215 374 WAKGYRELIDLLAKHK-N-----DLDGFKLDVFGNGE----DAYEVQSAAKRLDLNLNFQKGR-DHADDSLH--GYKVFI 440 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~-~-----~~~~~~LvIvG~g~----~~~~l~~~~~~l~l~v~f~g~~-~~~~~ll~--~aDv~V 440 (612)
...|.+..++++.+.. . ....-.+.++|..+ +..+++++.++.|+++...... ...+++-+ .|++.+
T Consensus 126 ~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nl 205 (399)
T cd00316 126 QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNL 205 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEE
Confidence 4468888887775432 2 11234578888644 5588999999999996553333 55554444 445444
Q ss_pred eccCCCcchHHHHHHHH--cCCcEEeeC
Q 007215 441 NPSISDVLCTATAEALA--MGKFVICAD 466 (612)
Q Consensus 441 ~PS~~E~fgl~llEAMA--~G~PVVas~ 466 (612)
..+. -+|..+.|.|. +|+|-+...
T Consensus 206 v~~~--~~g~~~a~~l~~~~g~p~~~~~ 231 (399)
T cd00316 206 VLCR--ESGLYLARYLEEKYGIPYILIN 231 (399)
T ss_pred EecH--hHHHHHHHHHHHHhCCCeEEeC
Confidence 4433 25667777774 899998875
No 267
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.13 E-value=4e+02 Score=28.89 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=48.7
Q ss_pred HHcCCcEEeeCCCC-ccccccCC-cEE----ec-CCHHHHHHHHHHHHhC-CCCCCCHHHHhcCCHHHHHHHHHHHHhc
Q 007215 456 LAMGKFVICADHPS-NEFFRSFP-NCL----TY-KTSEDFVARVKEALAN-DPQPLTPEQRYNLSWEAATQRFIEYSEL 526 (612)
Q Consensus 456 MA~G~PVVas~~gg-~~~i~~~~-~g~----l~-~d~~~la~aI~~ll~~-~~~~~~~~~~~~~sWe~~~~~~~~~y~~ 526 (612)
.|.++||+--..|- .+++.... .-| += +|.+.|.+++.++..+ .++.......-+|+.....++|.....+
T Consensus 264 aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~d~~el~~kl~~gkFtlrd~y~Qfq~imkm 342 (483)
T KOG0780|consen 264 AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDDAKELVEKLKQGKFTLRDFYDQFQNIMKM 342 (483)
T ss_pred hhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHHHHHhCCccHHHHHHHHHHHHhh
Confidence 46799999888884 56555532 222 22 9999999999999833 3344456666778877777777776654
No 268
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=28.12 E-value=2.3e+02 Score=29.29 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHH
Q 007215 377 GYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAE 454 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llE 454 (612)
..+...+|++.+.++.++.+++|+++ |.+.+++..+.....+.+.+.-+..+ .+++.||.+|.+. -+||.=. -
T Consensus 189 ~~~Yy~~Ai~~i~~~~~~~~f~ifSD--D~~w~k~~l~~~~~~~~~~~~~~~~~Dl~lms~C~~~Iisn--STFswW~-a 263 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKVKNPKFFIFSD--DIEWCKENLKFSNGDVYFSGNNSPYEDLYLMSQCKHFIISN--STFSWWA-A 263 (298)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHhhcCCcEEEECCCCHHHHHHHHHhCCcEEECC--ChHHHHH-H
Confidence 45667788888888888899999995 55666665554443456666523223 7889999888873 3455422 1
Q ss_pred HHHcCCcEEeeC
Q 007215 455 ALAMGKFVICAD 466 (612)
Q Consensus 455 AMA~G~PVVas~ 466 (612)
.++-|-.++..+
T Consensus 264 ~L~~~~~i~i~p 275 (298)
T PF01531_consen 264 YLSKNDKIVIAP 275 (298)
T ss_pred HHCCCCCEEEEC
Confidence 234454454443
No 269
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=28.04 E-value=4.4e+02 Score=27.88 Aligned_cols=103 Identities=11% Similarity=0.005 Sum_probs=58.2
Q ss_pred CcEEEeCCCCCCCCCCCcc----chhhhhhccC--CCCcEEEEEeccCC--ccCHHHHHHHHHHhhccCCCeEEEEEec-
Q 007215 332 SVICNVHGVNPKFLQIGEK----VATDREQGQQ--AFSKGAYFLGKMVW--AKGYRELIDLLAKHKNDLDGFKLDVFGN- 402 (612)
Q Consensus 332 ~~i~vinGVd~~~f~~~~~----~~~~~~~~~~--~~~~~il~vGrl~~--~Kg~~~Li~A~~~l~~~~~~~~LvIvG~- 402 (612)
..+.|||+-+. .+|... -...+.+|.- +-+..+.|+|-... ..=...++.++.++ ++++.+++.
T Consensus 136 s~vPVINa~~~--~HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~-----g~~v~~~~P~ 208 (335)
T PRK04523 136 STVPVINMETI--THPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRL-----GMDVTLLCPT 208 (335)
T ss_pred CCCCEEECCCC--CChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHc-----CCEEEEECCc
Confidence 56888898764 566422 2234445532 22233467764322 12244566666665 578999986
Q ss_pred C---CCHHH---HHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 403 G---EDAYE---VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 403 g---~~~~~---l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
. ++.+. .++.+++.|..+.+ ..+.++.+..+||+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~g~~~~~---~~d~~ea~~~aDvvy~~~w 253 (335)
T PRK04523 209 PDYILDERYMDWAEQNAAESGGSLTV---SHDIDSAYAGADVVYAKSW 253 (335)
T ss_pred hhhCCCHHHHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEecee
Confidence 2 22222 22344556655554 3667789999998877654
No 270
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.84 E-value=3.7e+02 Score=27.31 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=20.7
Q ss_pred cce-EEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 436 YKV-FINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 436 aDv-~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
+|. ++.|...+...-.+-++...|+|||+.+..
T Consensus 58 vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 58 VDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 453 344543333344566778899999998764
No 271
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=27.53 E-value=1.7e+02 Score=28.06 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=43.7
Q ss_pred EEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCC-----------CcchHHHHHHHHcCCcEEee
Q 007215 397 LDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSIS-----------DVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 397 LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~-----------E~fgl~llEAMA~G~PVVas 465 (612)
++..|.......+.+++++.|.++.++....+ +..+|.+++|.-. .++--.+.++...|+||++.
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 34445445556777777777777666655444 5567888887543 12223467778889999987
Q ss_pred CCC
Q 007215 466 DHP 468 (612)
Q Consensus 466 ~~g 468 (612)
-.|
T Consensus 79 C~G 81 (194)
T cd01750 79 CGG 81 (194)
T ss_pred CHH
Confidence 555
No 272
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.35 E-value=8.4e+02 Score=26.57 Aligned_cols=109 Identities=9% Similarity=0.097 Sum_probs=60.6
Q ss_pred ccCHHHHHHHHHH-hhc-----cCCCeEEEEEecC---CCHHHHHHHHHHcCCceE-EecCCCCHHHHHhcc--ceEEec
Q 007215 375 AKGYRELIDLLAK-HKN-----DLDGFKLDVFGNG---EDAYEVQSAAKRLDLNLN-FQKGRDHADDSLHGY--KVFINP 442 (612)
Q Consensus 375 ~Kg~~~Li~A~~~-l~~-----~~~~~~LvIvG~g---~~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~a--Dv~V~P 442 (612)
..|.+...+++.+ +.. ..++-.+-|+|.- .+..+++++.++.|+++. .+..-...+++-... .+-|..
T Consensus 147 ~~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~ 226 (421)
T cd01976 147 SLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIH 226 (421)
T ss_pred cHHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEE
Confidence 3466655555532 221 1123457777742 245789999999999854 344444555454444 444333
Q ss_pred cCCCcchHHHHHHH--HcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHh
Q 007215 443 SISDVLCTATAEAL--AMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 443 S~~E~fgl~llEAM--A~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~ 497 (612)
+... +..+.|.| -.|+|-+...--|. .+.+++-++|.+++.
T Consensus 227 ~~~~--~~~~a~~Le~~fGiP~~~~~p~Gi------------~~t~~~l~~ia~~~g 269 (421)
T cd01976 227 CYRS--MNYIARMMEEKYGIPWMEYNFFGP------------TKIAESLRKIAAYFD 269 (421)
T ss_pred CcHH--HHHHHHHHHHHhCCcEEecccCCH------------HHHHHHHHHHHHHhC
Confidence 3222 23456666 48999987531021 345667777777773
No 273
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=27.06 E-value=5.6e+02 Score=27.07 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCcc----chhhhh-hccCCCCcEEEEEeccCCccCHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGEK----VATDRE-QGQQAFSKGAYFLGKMVWAKGYRELIDLL 385 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~~----~~~~~~-~~~~~~~~~il~vGrl~~~Kg~~~Li~A~ 385 (612)
++|.++.-... ..++. ...+.||||-+ +..+|... -...+. +|. -....|.|+|-+. ..=...++.++
T Consensus 100 y~D~iviR~~~~~~~~~~a~~s~vPVINa~~-~~~HPtQaL~Dl~Ti~e~~~g~-l~g~kia~vGD~~-~~v~~Sl~~~~ 176 (332)
T PRK04284 100 MYDGIEYRGFSQRTVETLAEYSGVPVWNGLT-DEDHPTQVLADFLTAKEHLKKP-YKDIKFTYVGDGR-NNVANALMQGA 176 (332)
T ss_pred hCCEEEEecCchHHHHHHHHhCCCCEEECCC-CCCChHHHHHHHHHHHHHhcCC-cCCcEEEEecCCC-cchHHHHHHHH
Confidence 47887776553 22232 25677889755 34555422 223333 232 2246889999762 22345666666
Q ss_pred HHhhccCCCeEEEEEecCCCH--HHH----HHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 386 AKHKNDLDGFKLDVFGNGEDA--YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 386 ~~l~~~~~~~~LvIvG~g~~~--~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
..+ ++.+.+++..... +.+ ++.+++.|..+.+ ..+.++.+..||++...+.
T Consensus 177 ~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~---~~d~~ea~~~aDvvy~~~w 233 (332)
T PRK04284 177 AIM-----GMDFHLVCPKELNPDDELLNKCKEIAAETGGKITI---TDDIDEGVKGSDVIYTDVW 233 (332)
T ss_pred HHc-----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEECCc
Confidence 655 6788888853211 222 2334455655554 3667788999998877643
No 274
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=27.06 E-value=1.7e+02 Score=27.09 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHhhccC-CCeEEEEEecCCCH-HHHHHHHHHcCCc-eEEecC--CC--CHH-------HHHhc--cceEE
Q 007215 377 GYRELIDLLAKHKNDL-DGFKLDVFGNGEDA-YEVQSAAKRLDLN-LNFQKG--RD--HAD-------DSLHG--YKVFI 440 (612)
Q Consensus 377 g~~~Li~A~~~l~~~~-~~~~LvIvG~g~~~-~~l~~~~~~l~l~-v~f~g~--~~--~~~-------~ll~~--aDv~V 440 (612)
--..++.+..++.++. ..+..+++|+.+.. +.+++....+|.+ +..... .. +.+ ++++. +|+++
T Consensus 16 ~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl 95 (164)
T PF01012_consen 16 VSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVL 95 (164)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3456777777887654 35778889953443 5667767778876 443321 11 222 44444 58999
Q ss_pred eccCCCcchHHHHHHHHcCCcEEee
Q 007215 441 NPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 441 ~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
+|+...+-.+...=|..+|.|+++-
T Consensus 96 ~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 96 FGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp EESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred EcCcCCCCcHHHHHHHHhCCCccce
Confidence 9988877777777788888888865
No 275
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=27.01 E-value=2.1e+02 Score=30.79 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=56.5
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecC----------CCCHHHHHhccceEE--eccCCC----cc---hHHH
Q 007215 392 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKG----------RDHADDSLHGYKVFI--NPSISD----VL---CTAT 452 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~----------~~~~~~ll~~aDv~V--~PS~~E----~f---gl~l 452 (612)
..+-++-|+|-|.--..+.+.++.+|.+|..+.. ..+.+++++.||+++ .|...+ +. +-..
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~ 193 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL 193 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence 3567899999988888888888888887655321 223458999999887 554443 43 4468
Q ss_pred HHHHHcCCcEEeeCCCC
Q 007215 453 AEALAMGKFVICADHPS 469 (612)
Q Consensus 453 lEAMA~G~PVVas~~gg 469 (612)
+++|--|.-+|-+..|+
T Consensus 194 l~~mk~gailIN~aRG~ 210 (378)
T PRK15438 194 IRSLKPGAILINACRGA 210 (378)
T ss_pred HhcCCCCcEEEECCCch
Confidence 88898888888777775
No 276
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=27.00 E-value=5.6e+02 Score=26.73 Aligned_cols=117 Identities=10% Similarity=0.092 Sum_probs=66.6
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCc----cchhhhhhcc-CCCCcEEEEEeccCCccCHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGE----KVATDREQGQ-QAFSKGAYFLGKMVWAKGYRELIDLL 385 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~----~~~~~~~~~~-~~~~~~il~vGrl~~~Kg~~~Li~A~ 385 (612)
++|.++.-... ..++. ...+.|||+-|.. .+|.. --..++.+|. .-....+.|+|. ..+=...++.++
T Consensus 97 ~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~-~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd--~~rv~~Sl~~~~ 173 (311)
T PRK14804 97 NVSVIMARLKKHEDLLVMKNGSQVPVINGCDNM-FHPCQSLADIMTIALDSPEIPLNQKQLTYIGV--HNNVVNSLIGIT 173 (311)
T ss_pred cCCEEEEeCCChHHHHHHHHHCCCCEEECCCCC-CChHHHHHHHHHHHHHhCCCCCCCCEEEEECC--CCcHHHHHHHHH
Confidence 67887764332 22222 2557788976654 55542 2223344442 123468889994 334456777777
Q ss_pred HHhhccCCCeEEEEEecCCCHHH----HHHHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 386 AKHKNDLDGFKLDVFGNGEDAYE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 386 ~~l~~~~~~~~LvIvG~g~~~~~----l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
..+ ++.+.+++.....+. ..+.+++.+ .+.+ .++.++.+..+||+....
T Consensus 174 ~~~-----G~~v~~~~P~~~~~~~~~~~~~~~~~~g-~i~~---~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 174 AAL-----GIHLTLVTPIAAKENIHAQTVERAKKKG-TLSW---EMNLHKAVSHADYVYTDT 226 (311)
T ss_pred HHc-----CCEEEEECCCCccHHHHHHHHHHHHhcC-CeEE---EeCHHHHhCCCCEEEeee
Confidence 765 678999986443222 223333333 3443 256778899999887643
No 277
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.95 E-value=2.6e+02 Score=27.62 Aligned_cols=114 Identities=11% Similarity=0.136 Sum_probs=56.4
Q ss_pred CcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhccceEEe
Q 007215 363 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFIN 441 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~ 441 (612)
..+++|+|....+--- .|++..+++++..-.+.++.+|..... +.+.+.++..+.. | ..+.+...
T Consensus 108 ~riVvFvGSpi~e~ek-eLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~----~---------~gshlv~V 173 (259)
T KOG2884|consen 108 QRIVVFVGSPIEESEK-ELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK----G---------DGSHLVSV 173 (259)
T ss_pred eEEEEEecCcchhhHH-HHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC----C---------CCceEEEe
Confidence 3466777764332111 566666666665445556666654443 4455544443311 0 11233444
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccC----CcEEecCCHHHHHHHHHHHH
Q 007215 442 PSISDVLCTATAEALAMGKFVICADHPSNEF-FRSF----PNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~----~~g~l~~d~~~la~aI~~ll 496 (612)
|.- .+++-.-.-.||+.-+.|+... .... +-|+..++-.+||.||+--+
T Consensus 174 ppg------~~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSM 227 (259)
T KOG2884|consen 174 PPG------PLLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSM 227 (259)
T ss_pred CCC------ccHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhH
Confidence 421 1344445567888876554221 1111 12333344456888887666
No 278
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=26.90 E-value=4.6e+02 Score=24.58 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=73.4
Q ss_pred CCeEEEEEecCCCHHHHHHH---HHHcCCceEEecCCCCHHHHHhcc--c-eEEeccCCCcchHHHHHHHHcCCc----E
Q 007215 393 DGFKLDVFGNGEDAYEVQSA---AKRLDLNLNFQKGRDHADDSLHGY--K-VFINPSISDVLCTATAEALAMGKF----V 462 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~---~~~l~l~v~f~g~~~~~~~ll~~a--D-v~V~PS~~E~fgl~llEAMA~G~P----V 462 (612)
|+-.|+|+-+ |...++.+ .++-|..|.....+.+.-...+.. + +.|---...+.|+.++|++..-.+ |
T Consensus 8 pd~~lllvdD--D~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~riv 85 (182)
T COG4567 8 PDKSLLLVDD--DTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIV 85 (182)
T ss_pred CCceeEEecC--ChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEE
Confidence 4446777764 43334433 445555555433332222233322 1 333333456899999999987654 7
Q ss_pred EeeCCCCc----cccccCCcEEec--CCHHHHHHHHHHHHhCCC--CCCCHHHHhcCCHHHHHHHHHHH
Q 007215 463 ICADHPSN----EFFRSFPNCLTY--KTSEDFVARVKEALANDP--QPLTPEQRYNLSWEAATQRFIEY 523 (612)
Q Consensus 463 Vas~~gg~----~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~--~~~~~~~~~~~sWe~~~~~~~~~ 523 (612)
|.|..++. +-|.-|..-++. .|.+++..++.+--.+.. ..-..+...+..||.+-+-|.+.
T Consensus 86 vLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~~d~~~~~~~~pmS~~rl~WEhIqrvl~e~ 154 (182)
T COG4567 86 VLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRREPDEDTAPPENPMSADRLRWEHIQRVLEEC 154 (182)
T ss_pred EEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcCCCcccCCCCCCCchhHhhHHHHHHHHHHh
Confidence 77777753 344445555666 788888888776531211 12236777778998776655553
No 279
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=26.66 E-value=4.9e+02 Score=23.69 Aligned_cols=74 Identities=20% Similarity=0.128 Sum_probs=49.1
Q ss_pred cCCCeEEEEEecCCCH-HHHHHHHHHcCCceEEecC-CCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 391 DLDGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKG-RDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 391 ~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~-~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
+..+-+++|+|.+... +.+..+..+.+..+..... -.+.++..+.||+.+...-.- ++.--|-+.-|.-|+ |+|
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~Vi--dvg 100 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATVI--NCS 100 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEEE--EcC
Confidence 4457789999987765 5566666666766665443 335668999999998875543 334456666776666 444
No 280
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=26.58 E-value=5.9e+02 Score=28.15 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHH-Hhhc--cCCCeEEEEEecC---CCHHHHHHHHHHcCCceEEecC------------------CCCH
Q 007215 374 WAKGYRELIDLLA-KHKN--DLDGFKLDVFGNG---EDAYEVQSAAKRLDLNLNFQKG------------------RDHA 429 (612)
Q Consensus 374 ~~Kg~~~Li~A~~-~l~~--~~~~~~LvIvG~g---~~~~~l~~~~~~l~l~v~f~g~------------------~~~~ 429 (612)
...|++..++++- .+.. ..++-++-|+|.- .|..+++++.++.|+++..+.. -...
T Consensus 143 ~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~l~d~~~~d~~~~~~~~~~~~g~ts~ 222 (457)
T TIGR02932 143 QVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANILMDTEDFDSPMLPDKSIFTHGRTTV 222 (457)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCccccCCCCCCH
Confidence 3478888887764 3322 1123346666632 2457899999999999655321 1233
Q ss_pred HHHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 430 DDSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 430 ~~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
+++-+....-++.......|..+.|+|. +|+|-+..+.+ |. .+.+++-+.|.+++
T Consensus 223 ~~i~~~~~A~~nlv~~~~~g~~~A~~Lee~fGiPy~~~~~p~G~------------~~t~~~L~~la~~~ 280 (457)
T TIGR02932 223 EDIADSANAIATLALAKYEGGNTAEFLQETFDVPSILVPTPYGI------------KNTDAMLKNISELT 280 (457)
T ss_pred HHHHhhhhCcEEEEEcccchHHHHHHHHHHHCCCeeccCCCcCh------------HHHHHHHHHHHHHH
Confidence 3444433332222222234567777775 79998764432 22 23455556666665
No 281
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=26.22 E-value=4.4e+02 Score=25.83 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=41.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCC-C-------cc-----hHHHHHHHHcCC
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSIS-D-------VL-----CTATAEALAMGK 460 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~-E-------~f-----gl~llEAMA~G~ 460 (612)
.=+-+++++..+..-.+++.+++. +..+. ...+.||+++.|.+. . |. ...+++++..|+
T Consensus 20 ~~k~i~~~~~~~~~i~e~~~~~~~--i~~~~------~~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK 91 (207)
T TIGR02536 20 EKKYIVALGDSKHAIPEEMLKEFD--VSWVT------SEQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGK 91 (207)
T ss_pred cCceEEEecCCchhhHHHHHhhcc--eeecc------hhhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCC
Confidence 334455554444444444555553 44332 245688999999764 1 11 245899999999
Q ss_pred cEEeeCCC
Q 007215 461 FVICADHP 468 (612)
Q Consensus 461 PVVas~~g 468 (612)
||++...|
T Consensus 92 ~V~v~~eg 99 (207)
T TIGR02536 92 PIYILKPG 99 (207)
T ss_pred eEEEEecc
Confidence 99998755
No 282
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=25.92 E-value=6.8e+02 Score=27.72 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=63.7
Q ss_pred CccCHHHHHHHHH-Hhhc-cCCCeEEEEEecC---CCHHHHHHHHHHcCCceEEecCC------------------CCHH
Q 007215 374 WAKGYRELIDLLA-KHKN-DLDGFKLDVFGNG---EDAYEVQSAAKRLDLNLNFQKGR------------------DHAD 430 (612)
Q Consensus 374 ~~Kg~~~Li~A~~-~l~~-~~~~~~LvIvG~g---~~~~~l~~~~~~l~l~v~f~g~~------------------~~~~ 430 (612)
...|++..++++- .+.. ..++-.+-|+|.. .+..+++++.++.|+++..+... ...+
T Consensus 147 ~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~gg~tle 226 (461)
T TIGR02931 147 MITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEANVLFEIESFDSPLMPDKSAVSHGSTTIE 226 (461)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceEEeeccccccCCCCCcccccCCCCCcHH
Confidence 3568887777664 2222 1233456667742 34588999999999995543211 2344
Q ss_pred HHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 431 DSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
++-+....-++-+.....+..+.|+|. +|+|-+..+.+ |. .+.+++-..|.+++
T Consensus 227 ei~~~~~A~lniv~~~~~g~~~A~~Lee~~giP~~~~~~piGi------------~~T~~fl~~l~~~~ 283 (461)
T TIGR02931 227 DLTDTANAKGTIALNRYEGMKAADYLQKKFDVPAIIGPTPIGI------------RNTDTFLQNLKKMT 283 (461)
T ss_pred HHHhhccCcEEEEEcHhhHHHHHHHHHHHhCCCeeccCCCcch------------HHHHHHHHHHHHHH
Confidence 455544443443333335667777774 69998865432 21 23455666666666
No 283
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=25.76 E-value=44 Score=25.86 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=20.1
Q ss_pred eecccCCCChhhhhhhhhhHHHHHHHHHHH
Q 007215 26 VLNEVGIQPPLCEMWGRILPIIWNQIRSIL 55 (612)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (612)
++|.++=.||.++|. +||||++++-
T Consensus 18 ~i~~L~~~~~~~dm~-----~IW~~v~~~e 42 (61)
T TIGR01639 18 LINSLDEIPNRNDML-----IIWNQVHGIE 42 (61)
T ss_pred HHHhhcCCCCHHHHH-----HHHHHHHHHH
Confidence 466777789999986 7999998764
No 284
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=25.35 E-value=2.1e+02 Score=26.71 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH-HHHhccceEEeccC
Q 007215 379 RELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD-DSLHGYKVFINPSI 444 (612)
Q Consensus 379 ~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~-~ll~~aDv~V~PS~ 444 (612)
..|.+.+.++.++.+.+.++++-...+.+++.....+....-.++++-++.. ++...+.+-..|+.
T Consensus 53 P~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l 119 (157)
T KOG2501|consen 53 PILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPAL 119 (157)
T ss_pred chHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCcee
Confidence 4677888999888888999999998888888887777666655566666555 77777877666654
No 285
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.14 E-value=5e+02 Score=25.19 Aligned_cols=92 Identities=16% Similarity=0.031 Sum_probs=54.4
Q ss_pred cCHHHHHHHHHHhhccCCCeEEEEEecCCC--H---HHHHHHHHHc-CCceEEecCC--CCHHHHHhccceEEeccC---
Q 007215 376 KGYRELIDLLAKHKNDLDGFKLDVFGNGED--A---YEVQSAAKRL-DLNLNFQKGR--DHADDSLHGYKVFINPSI--- 444 (612)
Q Consensus 376 Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~---~~l~~~~~~l-~l~v~f~g~~--~~~~~ll~~aDv~V~PS~--- 444 (612)
.+.+.|.+.+.+..+ .+.+++++..... . ..+.+..+++ |..+..+... ++..+.+..||+.++|-=
T Consensus 15 ~~~~~l~~~l~~~~~--~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~ 92 (212)
T cd03146 15 HALPAIDDLLLSLTK--ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTF 92 (212)
T ss_pred cchHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHH
Confidence 355566666655542 3567888876543 2 3344455677 7664433222 233478899999998841
Q ss_pred -----C-C-cchHHHHHHHHcCCcEEeeCCCC
Q 007215 445 -----S-D-VLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 445 -----~-E-~fgl~llEAMA~G~PVVas~~gg 469 (612)
. + ++--.+-++...|+|++.+-.|.
T Consensus 93 ~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 93 NLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred HHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 0 1 12223445667899999998875
No 286
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=24.92 E-value=1.6e+02 Score=26.16 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=34.2
Q ss_pred CccCHHHHH--HHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecC-CCCHHHHHhccceEEe
Q 007215 374 WAKGYRELI--DLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKG-RDHADDSLHGYKVFIN 441 (612)
Q Consensus 374 ~~Kg~~~Li--~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~-~~~~~~ll~~aDv~V~ 441 (612)
.+|+.+..| +++....+..++.-+++.|+++....++ .+++.|..|.+++. -...+++.+.||-|+.
T Consensus 75 ~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~-~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~ 144 (146)
T PF01936_consen 75 GKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVR-KLRERGKRVIVVGAEDSASEALRSAADEFIS 144 (146)
T ss_dssp -S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHH-HHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred ccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHH-HHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence 557776554 6666665444566666677655444444 46688888888773 3344489999997763
No 287
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=24.56 E-value=3.7e+02 Score=28.65 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=41.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccc---eEEeccCCCcchHH
Q 007215 395 FKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYK---VFINPSISDVLCTA 451 (612)
Q Consensus 395 ~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aD---v~V~PS~~E~fgl~ 451 (612)
=.|+|+| +++.++.++-+.+..|...|+++-.++..+.|| +=|+.|.++.|-.+
T Consensus 115 g~LlIVG---nR~~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlstsYDTFTVA 171 (432)
T COG4109 115 GGLLIVG---NREDIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTFTVA 171 (432)
T ss_pred CceEEEe---cHHHHHHHHHhcCCeEEEeCCCCccHHHHHhhcccCCceEEecccceeHH
Confidence 3599999 466677777777767999999998888888874 66777778888554
No 288
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=24.40 E-value=4.1e+02 Score=25.85 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=53.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCC-CcchHHHHHHHHcCCcEEeeCCCC-cc
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSIS-DVLCTATAEALAMGKFVICADHPS-NE 471 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~-E~fgl~llEAMA~G~PVVas~~gg-~~ 471 (612)
+.++.++..... +++++++++. .+.+...-.. .+.+..+++++..+-. |.---...+|-+.|+||-+.+.+. .+
T Consensus 32 ga~VtVvsp~~~-~~l~~l~~~~--~i~~~~~~~~-~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~ 107 (205)
T TIGR01470 32 GAQLRVIAEELE-SELTLLAEQG--GITWLARCFD-ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS 107 (205)
T ss_pred CCEEEEEcCCCC-HHHHHHHHcC--CEEEEeCCCC-HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe
Confidence 456667664333 5666665543 4665443333 3457788865554333 333445667778999997776654 33
Q ss_pred cccc---CCcEEec-----CCHHHHHHHHHHHH
Q 007215 472 FFRS---FPNCLTY-----KTSEDFVARVKEAL 496 (612)
Q Consensus 472 ~i~~---~~~g~l~-----~d~~~la~aI~~ll 496 (612)
++.. ..+.+.+ +....++..|.+-+
T Consensus 108 f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~i 140 (205)
T TIGR01470 108 FIFPSIVDRSPVVVAISSGGAAPVLARLLRERI 140 (205)
T ss_pred EEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHH
Confidence 2222 1122222 44556666666555
No 289
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=24.38 E-value=3.8e+02 Score=28.09 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=40.5
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH------HHHh-----ccc---eEEeccCCCcchHHHHHHHH
Q 007215 392 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD------DSLH-----GYK---VFINPSISDVLCTATAEALA 457 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~------~ll~-----~aD---v~V~PS~~E~fgl~llEAMA 457 (612)
.|+..++|-|...-....+...+.+|..|.=.|+.+..+ ..++ +.+ ++|.-. ++ ++-.++|+|-
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~G-wD-y~~~~~e~~k 152 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYG-WD-YADALMELMK 152 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEec-cc-cHHHHHHHHh
Confidence 356544444433334666666777777766666666555 1221 233 333322 22 2227888888
Q ss_pred cCC-cEEeeCCC
Q 007215 458 MGK-FVICADHP 468 (612)
Q Consensus 458 ~G~-PVVas~~g 468 (612)
-|+ ||+.++..
T Consensus 153 ~~~~p~~~~n~~ 164 (337)
T COG2247 153 EGIVPVILKNTS 164 (337)
T ss_pred cCcceeEecccc
Confidence 887 66666543
No 290
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=24.34 E-value=94 Score=29.38 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=40.4
Q ss_pred ChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhC------C-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHH
Q 007215 239 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF------N-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWV 311 (612)
Q Consensus 239 ~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~------~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~ 311 (612)
........+.+.+||+|++..|..-.-.. .+++.+ + ++|++-- ..+....++..++++
T Consensus 80 ~~~~~~~il~r~rPdvii~nGpg~~vp~~---~~~~l~~~~~~~~~kiIyIES------~aRv~~lSlTGklly------ 144 (170)
T PF08660_consen 80 AFLQSLRILRRERPDVIISNGPGTCVPVC---LAAKLLRLLGLRGSKIIYIES------FARVKTLSLTGKLLY------ 144 (170)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCceeeHHH---HHHHHHHHhhccCCcEEEEEe------eeecCCCchHHHHHH------
Confidence 33445556668899999998876432222 222222 5 5554421 111112222222222
Q ss_pred HHhcCCeEEEeChhhhc-cCC
Q 007215 312 TRAYCDKVLRLSAATQD-LPK 331 (612)
Q Consensus 312 ~~~~ad~vI~~S~~~~~-~~~ 331 (612)
. .||.+++--+++.+ +++
T Consensus 145 -~-~aD~f~VQW~~l~~~yp~ 163 (170)
T PF08660_consen 145 -P-FADRFIVQWEELAEKYPR 163 (170)
T ss_pred -H-hCCEEEEcCHHHHhHCCC
Confidence 2 48999999998876 443
No 291
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=24.32 E-value=4.6e+02 Score=27.46 Aligned_cols=62 Identities=23% Similarity=0.410 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCceEEecCCC-CHH-------HHH-hccceEE-eccCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 408 EVQSAAKRLDLNLNFQKGRD-HAD-------DSL-HGYKVFI-NPSISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 408 ~l~~~~~~l~l~v~f~g~~~-~~~-------~ll-~~aDv~V-~PS~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
.+++.++++|..+.+.+... +.+ .++ +..|..+ .|...+.+.-.+-+|+..|+|||+.+...
T Consensus 44 Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~ 115 (336)
T PRK15408 44 GAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDT 115 (336)
T ss_pred HHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 34455666666555433221 111 122 2246444 45444555567888999999999998753
No 292
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.97 E-value=3.5e+02 Score=26.62 Aligned_cols=80 Identities=9% Similarity=0.020 Sum_probs=40.3
Q ss_pred HHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH-HHHhccceEEeccCCCcchHHHHHHHHcCC
Q 007215 382 IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD-DSLHGYKVFINPSISDVLCTATAEALAMGK 460 (612)
Q Consensus 382 i~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~-~ll~~aDv~V~PS~~E~fgl~llEAMA~G~ 460 (612)
+++++.+++++|++ ++-+|.--+.++.+. +.+.|-+....+..++.- +.-..+++.+.|... -+.-+.+|+.+|.
T Consensus 54 ~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~-a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~--TptEi~~a~~~Ga 129 (212)
T PRK05718 54 LEAIRLIAKEVPEA-LIGAGTVLNPEQLAQ-AIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVS--TPSELMLGMELGL 129 (212)
T ss_pred HHHHHHHHHHCCCC-EEEEeeccCHHHHHH-HHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCC--CHHHHHHHHHCCC
Confidence 34445555555653 455555444444444 445554444434433311 444444666666432 1223667777777
Q ss_pred cEEee
Q 007215 461 FVICA 465 (612)
Q Consensus 461 PVVas 465 (612)
.+|--
T Consensus 130 ~~vKl 134 (212)
T PRK05718 130 RTFKF 134 (212)
T ss_pred CEEEE
Confidence 77654
No 293
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.90 E-value=3.6e+02 Score=29.02 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=65.4
Q ss_pred hhhhccC---CCCcEEEEEeccCCccC-HHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHH-----------HcCC
Q 007215 354 DREQGQQ---AFSKGAYFLGKMVWAKG-YRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAK-----------RLDL 418 (612)
Q Consensus 354 ~~~~~~~---~~~~~il~vGrl~~~Kg-~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~-----------~l~l 418 (612)
..++|++ ++...|...+ ..+. +..++++++.-. ..+.++|.++ .-...+.+... .-.+
T Consensus 172 ~~~lg~~~~~~~~~~vslF~---Ye~~~l~~ll~~~~~~~---~pv~llvp~g-~~~~~~~~~~~~~~~~~g~~~~~g~l 244 (374)
T PF10093_consen 172 LRRLGLPEPEPGALRVSLFC---YENAALASLLDAWAASP---KPVHLLVPEG-RALNSLAAWLGDALLQAGDSWQRGNL 244 (374)
T ss_pred HHHcCCCCCCCCCeEEEEEe---CCchHHHHHHHHHhcCC---CCeEEEecCC-ccHHHHHHHhccccccCccccccCCe
Confidence 3456664 3333443333 4444 888888887543 3466666654 44444433322 1123
Q ss_pred ceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc
Q 007215 419 NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN 470 (612)
Q Consensus 419 ~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~ 470 (612)
.+.+++++++.+ ++|..||+-++=- |- +.+=|.-+|+|.|=.-.+-.
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~NfVRG--ED---SfVRAqwAgkPFvWhIYpQ~ 293 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDFNFVRG--ED---SFVRAQWAGKPFVWHIYPQE 293 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCccceEec--ch---HHHHHHHhCCCceEecCcCc
Confidence 377889998888 9999999765542 22 46899999999998876643
No 294
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=23.71 E-value=1e+02 Score=30.54 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=39.9
Q ss_pred eccCCccC-HHHHHHHHHHhhccCCCeEEEEEecCC--CH---HHHHHHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 370 GKMVWAKG-YRELIDLLAKHKNDLDGFKLDVFGNGE--DA---YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 370 Grl~~~Kg-~~~Li~A~~~l~~~~~~~~LvIvG~g~--~~---~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
-.++|.|- .+...+.++++.+.. ...+++|+.. .. .++.+.++++.+.+..++ .+...+...+|.+++||
T Consensus 4 ~liDPdK~~~~~~~~~~~~~~~~g--tdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp--~~~~~i~~~aDa~l~~s 79 (223)
T TIGR01768 4 TLIDPDKTNPSEADEIAKAAAESG--TDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFP--SNPTNVSRDADALFFPS 79 (223)
T ss_pred eeECCCCCCccccHHHHHHHHhcC--CCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeC--CCccccCcCCCEEEEEE
Confidence 34566663 223334444554443 3455666533 22 334455677777744322 34445677899999998
Q ss_pred CC
Q 007215 444 IS 445 (612)
Q Consensus 444 ~~ 445 (612)
..
T Consensus 80 vl 81 (223)
T TIGR01768 80 VL 81 (223)
T ss_pred ee
Confidence 64
No 295
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=23.59 E-value=1.1e+02 Score=28.69 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=26.2
Q ss_pred cceEEeccC----CCcch--HHHHHHHHcCCcEEeeCCCC-cccccc
Q 007215 436 YKVFINPSI----SDVLC--TATAEALAMGKFVICADHPS-NEFFRS 475 (612)
Q Consensus 436 aDv~V~PS~----~E~fg--l~llEAMA~G~PVVas~~gg-~~~i~~ 475 (612)
+|++|+--. .||-| -.+.||++.|+||+++=... .+....
T Consensus 94 ~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l~~W~~ 140 (159)
T PF10649_consen 94 ADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNLEAWRA 140 (159)
T ss_pred CCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHH
Confidence 477776532 24444 46999999999999984443 443333
No 296
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.27 E-value=3.8e+02 Score=27.18 Aligned_cols=115 Identities=11% Similarity=0.030 Sum_probs=64.3
Q ss_pred EEeccCCccCHHHHHHHHHHhhccCCCeEE-----------EEEecCCC-HHHHHHHHHHcCCceEE-ecCCCCHHHHHh
Q 007215 368 FLGKMVWAKGYRELIDLLAKHKNDLDGFKL-----------DVFGNGED-AYEVQSAAKRLDLNLNF-QKGRDHADDSLH 434 (612)
Q Consensus 368 ~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~L-----------vIvG~g~~-~~~l~~~~~~l~l~v~f-~g~~~~~~~ll~ 434 (612)
+++..+--...+.+++..+++++...++.. -.-|-|.. ...+++.++++|+.+.- .-...+.+.+..
T Consensus 28 ~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~ 107 (260)
T TIGR01361 28 VIAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAE 107 (260)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHh
Confidence 455566667788888877777643221100 11222211 15677778888866322 222223334445
Q ss_pred ccceEEeccCCCcchHHHHHHH-HcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 435 GYKVFINPSISDVLCTATAEAL-AMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 435 ~aDv~V~PS~~E~fgl~llEAM-A~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
.+|++-.+|. +..-..+++++ ..|+||+.+..-. .+.+++.+++..+.
T Consensus 108 ~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G~~-------------~t~~e~~~Ave~i~ 156 (260)
T TIGR01361 108 YADILQIGAR-NMQNFELLKEVGKQGKPVLLKRGMG-------------NTIEEWLYAAEYIL 156 (260)
T ss_pred hCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCCCC-------------CCHHHHHHHHHHHH
Confidence 5788888886 34444566665 4699999885322 24455556666555
No 297
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=23.12 E-value=5e+02 Score=25.60 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=47.2
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecC----CCH-----HHHHHHHHHcCCceEEecCCCCHHHHHh
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNG----EDA-----YEVQSAAKRLDLNLNFQKGRDHADDSLH 434 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g----~~~-----~~l~~~~~~l~l~v~f~g~~~~~~~ll~ 434 (612)
..++++|.-.-.+++-..+... . ...-++.++... .+. +..++++++.+.. +...+..+.+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~---G--~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~----~~~~~l~~~l~ 96 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA---G--AKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE----KTGGTLKEALK 96 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc---C--cCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC----cccCCHHHHHh
Confidence 4677777755555554444211 0 010146666654 222 1223344443211 10023436677
Q ss_pred ccceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 435 GYKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 435 ~aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
.+|++|+.|..--|+-..++.|+ ..|+|..
T Consensus 97 ~~dvlIgaT~~G~~~~~~l~~m~-~~~ivf~ 126 (226)
T cd05311 97 GADVFIGVSRPGVVKKEMIKKMA-KDPIVFA 126 (226)
T ss_pred cCCEEEeCCCCCCCCHHHHHhhC-CCCEEEE
Confidence 89999998864345556788886 4566653
No 298
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=22.74 E-value=4.8e+02 Score=29.40 Aligned_cols=113 Identities=10% Similarity=0.094 Sum_probs=63.1
Q ss_pred CCccCHHHHHHHHHH-hhc-------cCCCeEEEEEecC----CCHHHHHHHHHHcCCceEEecC---------------
Q 007215 373 VWAKGYRELIDLLAK-HKN-------DLDGFKLDVFGNG----EDAYEVQSAAKRLDLNLNFQKG--------------- 425 (612)
Q Consensus 373 ~~~Kg~~~Li~A~~~-l~~-------~~~~~~LvIvG~g----~~~~~l~~~~~~l~l~v~f~g~--------------- 425 (612)
....|++.+++++-+ +.. ..++-++-|+|+- .+..+++++.+..|+++.++..
T Consensus 191 s~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~ 270 (515)
T TIGR01286 191 SHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRM 270 (515)
T ss_pred cHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEEccCccccccCCCCCCccc
Confidence 445788888877643 221 1233456667632 3458899999999998664332
Q ss_pred ---CCCHHHHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHHh
Q 007215 426 ---RDHADDSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 426 ---~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll~ 497 (612)
-...+++-...+.-++-+...-.+....|.|. +|.|.+....+ |. ...+++-.+|.+++.
T Consensus 271 ~~ggttleei~~a~~A~~~ivl~~~~~~~~a~~l~~~~g~p~~~~~~PiGi------------~~Td~fL~~la~~~g 336 (515)
T TIGR01286 271 YAGGTTLEEMKDAPNAEATVLLQPYTLRKTKEYIEKTWKQETPKLNIPLGV------------KGTDEFLMKVSEISG 336 (515)
T ss_pred cCCCCCHHHHHHhhhCcEEEEEchhhhHHHHHHHHHHhCCCcccCCCCccH------------HHHHHHHHHHHHHHC
Confidence 12333333333322222222223446677666 79998766544 21 345667777777763
No 299
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.51 E-value=5.2e+02 Score=25.19 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=43.8
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH-HHHhccceEEeccCCCcchHHHHHHHHcC
Q 007215 381 LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD-DSLHGYKVFINPSISDVLCTATAEALAMG 459 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~-~ll~~aDv~V~PS~~E~fgl~llEAMA~G 459 (612)
.+++++++++++|++ ++=+|.--+.+++++ +.+.|-+..+-+..++.- +.-+.+++.++|--. .+.-+++|+.+|
T Consensus 42 a~~~I~~l~~~~~~~-~vGAGTVl~~e~a~~-ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~--TptEi~~A~~~G 117 (201)
T PRK06015 42 ALDAIRAVAAEVEEA-IVGAGTILNAKQFED-AAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAA--TPSEVMALREEG 117 (201)
T ss_pred HHHHHHHHHHHCCCC-EEeeEeCcCHHHHHH-HHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCC--CHHHHHHHHHCC
Confidence 345555555556652 333444455565554 444554443333333222 556666777777432 345577888888
Q ss_pred CcEEe
Q 007215 460 KFVIC 464 (612)
Q Consensus 460 ~PVVa 464 (612)
.-+|=
T Consensus 118 a~~vK 122 (201)
T PRK06015 118 YTVLK 122 (201)
T ss_pred CCEEE
Confidence 77763
No 300
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=22.40 E-value=1.1e+03 Score=26.18 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=53.2
Q ss_pred EEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHHHHHhcc--ceEEeccCCCcchHHHHHHH--HcCCcEEeeCCCC
Q 007215 396 KLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINPSISDVLCTATAEAL--AMGKFVICADHPS 469 (612)
Q Consensus 396 ~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~a--Dv~V~PS~~E~fgl~llEAM--A~G~PVVas~~gg 469 (612)
.+.++|.-++ ..+++.+.+++|++|..+..-...+++-+.- .+.+..+ +|.-..++++ -+|+|.+..+.+
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~~~~~~c~~~---P~ls~aa~~Le~~~gvp~~~~P~P- 270 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIKVSGWLPSQRYTDLPSLGEGVYVCGVN---PFLSRTATTLMRRRKCKLIGAPFP- 270 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCeEeEEeCCCCHHHHHhhCcccEEEEcC---cchHHHHHHHHHHhCCceeecCCc-
Confidence 5888997553 4788899999999965433333444444433 2222222 2222445555 579999887655
Q ss_pred ccccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 470 NEFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 470 ~~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
+=..+.+++-++|.+++..
T Consensus 271 ----------iGi~~Td~fLr~Ia~~~G~ 289 (457)
T CHL00073 271 ----------IGPDGTRAWIEKICSVFGI 289 (457)
T ss_pred ----------CcHHHHHHHHHHHHHHhCc
Confidence 0114567777888888744
No 301
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=22.37 E-value=1.4e+02 Score=29.81 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=49.8
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEE-ecCCCCHHHHHhc--cceEE
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNF-QKGRDHADDSLHG--YKVFI 440 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f-~g~~~~~~~ll~~--aDv~V 440 (612)
+.+.| ||..+-|---.+++.++++++..+-+++...-+... +..++. |-. .|.- ..+++. +|+++
T Consensus 144 ~~~G~-gr~~e~~~~~~~~~~l~~ik~~l~~v~val~~g~~~----~~~i~~----V~vcAgsg---~svlk~~~adly~ 211 (272)
T KOG4131|consen 144 ETIGY-GREEETKINLNVVEILKRIKRGLSSVRVALAVGHTL----ESQIKK----VAVCAGSG---SSVLKGVDADLYI 211 (272)
T ss_pred ccccc-cceeeccCcccHHHHHHHHHhcCCeEEEeeccCCcc----ccceeE----EEEeeccC---cceeccccccEEE
Confidence 45555 888776655558888888877666666544332211 111111 111 1111 123333 45554
Q ss_pred eccCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 441 NPSISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 441 ~PS~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
-- |-.=--+++|++.|+-||..+...
T Consensus 212 TG---EmSHH~vL~~~~~g~sVilc~HSN 237 (272)
T KOG4131|consen 212 TG---EMSHHDVLDAAANGISVILCEHSN 237 (272)
T ss_pred ec---cccHHHHHHHHHcCCeEEEecCCC
Confidence 32 222234799999999999987764
No 302
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.27 E-value=5.6e+02 Score=25.04 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=42.6
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH-HHHhccceEEeccCCCcchHHHHHHHHcC
Q 007215 381 LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD-DSLHGYKVFINPSISDVLCTATAEALAMG 459 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~-~ll~~aDv~V~PS~~E~fgl~llEAMA~G 459 (612)
.+++++++++++|++ ++=+|+--+.++.++ +.+.|-+..+-+..+..- +..+.+++.+.|-- ..+.-+..|+.+|
T Consensus 46 a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~-a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~--~TptEi~~A~~~G 121 (204)
T TIGR01182 46 ALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQ-AVDAGAQFIVSPGLTPELAKHAQDHGIPIIPGV--ATPSEIMLALELG 121 (204)
T ss_pred HHHHHHHHHHHCCCC-EEEEEeCCCHHHHHH-HHHcCCCEEECCCCCHHHHHHHHHcCCcEECCC--CCHHHHHHHHHCC
Confidence 344555555555653 455565556666655 334554433333332221 55555677777732 1344577777778
Q ss_pred CcEEe
Q 007215 460 KFVIC 464 (612)
Q Consensus 460 ~PVVa 464 (612)
..+|=
T Consensus 122 a~~vK 126 (204)
T TIGR01182 122 ITALK 126 (204)
T ss_pred CCEEE
Confidence 76653
No 303
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=21.93 E-value=4.7e+02 Score=29.68 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=63.8
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCC
Q 007215 381 LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGK 460 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~ 460 (612)
+++|+...++. .-++.++|-......++.+.+-+++++.........+ .--.+.++-+.|.
T Consensus 96 il~al~~a~~~--~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e-----------------~~~~v~~lk~~G~ 156 (538)
T PRK15424 96 VMQALARARKL--TSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEED-----------------ARGQINELKANGI 156 (538)
T ss_pred HHHHHHHHHhc--CCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHH-----------------HHHHHHHHHHCCC
Confidence 56777665443 3468888877767777777777777765544444333 2234577778888
Q ss_pred cEEeeCCCCcccccc-CCcEEecCCHHHHHHHHHHHHh
Q 007215 461 FVICADHPSNEFFRS-FPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 461 PVVas~~gg~~~i~~-~~~g~l~~d~~~la~aI~~ll~ 497 (612)
-+|.-+.-..+.-.. +-+|.+..+.+++.+++.+++.
T Consensus 157 ~~vvG~~~~~~~A~~~g~~g~~~~s~e~i~~a~~~A~~ 194 (538)
T PRK15424 157 EAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFEDALD 194 (538)
T ss_pred CEEEcCchHHHHHHHhCCceEEecCHHHHHHHHHHHHH
Confidence 888866444443333 5667776667888888888763
No 304
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.93 E-value=2.8e+02 Score=26.93 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=44.1
Q ss_pred HHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH-HHHhccceEEeccCCCcchHHHHHHHHcCC
Q 007215 382 IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD-DSLHGYKVFINPSISDVLCTATAEALAMGK 460 (612)
Q Consensus 382 i~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~-~ll~~aDv~V~PS~~E~fgl~llEAMA~G~ 460 (612)
+++++.+++++|++ ++=+|.--+.++.++ +.+.|-+..+-+..++.- ++-+.+++.+.|--. .+.-+.+|+.+|.
T Consensus 47 ~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~-a~~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~--TptEi~~A~~~G~ 122 (196)
T PF01081_consen 47 LEAIEALRKEFPDL-LVGAGTVLTAEQAEA-AIAAGAQFIVSPGFDPEVIEYAREYGIPYIPGVM--TPTEIMQALEAGA 122 (196)
T ss_dssp HHHHHHHHHHHTTS-EEEEES--SHHHHHH-HHHHT-SEEEESS--HHHHHHHHHHTSEEEEEES--SHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCC-eeEEEeccCHHHHHH-HHHcCCCEEECCCCCHHHHHHHHHcCCcccCCcC--CHHHHHHHHHCCC
Confidence 34555555556775 455666666666665 455565544444433222 566666788888432 3555788888888
Q ss_pred cEEee
Q 007215 461 FVICA 465 (612)
Q Consensus 461 PVVas 465 (612)
.+|=-
T Consensus 123 ~~vK~ 127 (196)
T PF01081_consen 123 DIVKL 127 (196)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77744
No 305
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=21.89 E-value=32 Score=38.37 Aligned_cols=16 Identities=69% Similarity=1.441 Sum_probs=12.7
Q ss_pred chhhhccCc------Cceeeeeeecc
Q 007215 10 FWHIWFGNL------DHFWIILVLNE 29 (612)
Q Consensus 10 ~~~~~~~~~------~~~~~~~~~~~ 29 (612)
.=|-||||| +||| |||
T Consensus 296 IAHSWtGNlVTN~sWehfW----LNE 317 (613)
T KOG1047|consen 296 IAHSWTGNLVTNASWEHFW----LNE 317 (613)
T ss_pred hhhhhcccccccCccchhh----hcc
Confidence 359999997 7999 566
No 306
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=21.87 E-value=1.1e+02 Score=25.73 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=29.8
Q ss_pred HhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCc
Q 007215 243 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNY 287 (612)
Q Consensus 243 l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~ 287 (612)
+...+.+++.||||.|........ .+..-++..+ +.|.+-|+.+
T Consensus 42 ~R~IlirE~I~IVHgH~a~S~l~h-E~i~hA~~mGlktVfTDHSLf 86 (90)
T PF08288_consen 42 LRNILIRERIDIVHGHQAFSTLCH-EAILHARTMGLKTVFTDHSLF 86 (90)
T ss_pred HHHHHHHcCeeEEEeehhhhHHHH-HHHHHHHhCCCcEEeeccccc
Confidence 455566899999999876432222 2455667778 8888888754
No 307
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.77 E-value=2.7e+02 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=20.1
Q ss_pred hHHHHHHHHcCCcEEee-CCCCcccccc
Q 007215 449 CTATAEALAMGKFVICA-DHPSNEFFRS 475 (612)
Q Consensus 449 gl~llEAMA~G~PVVas-~~gg~~~i~~ 475 (612)
-.++.||--+|.||||- |.-..+..++
T Consensus 169 ~iAv~EA~klgIPVvAlvDTn~dpd~VD 196 (252)
T COG0052 169 KIAVKEANKLGIPVVALVDTNCDPDGVD 196 (252)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCccCc
Confidence 35899999999999998 5445444444
No 308
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.76 E-value=1e+03 Score=25.69 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=63.2
Q ss_pred CccCHHHHHHHHHHhhc-c-C-CCeEEEEEecCCC--HHHHHHHHHHcCCceE-EecCCCCHHHHHhc--cceEEeccCC
Q 007215 374 WAKGYRELIDLLAKHKN-D-L-DGFKLDVFGNGED--AYEVQSAAKRLDLNLN-FQKGRDHADDSLHG--YKVFINPSIS 445 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~-~-~-~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~--aDv~V~PS~~ 445 (612)
..+|.+.+++++-.... . . .+-.+.+.|.-+. ..+++++.++.|+++. +++.. +.+++-.. +...+. .
T Consensus 130 ~~~G~~~~~~alv~~~~~~~~~~~~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lpd~-~~~e~~~~~~~~~~~~---~ 205 (407)
T TIGR01279 130 FTQGEDTVLAALVPFCPEAPASEQRALVLVGSVNDIVADQLRLELKQLGIPVVGFLPAS-HFTELPVIGPGTVVAP---L 205 (407)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCcEEEEeccChhhHHHHHHHHHHcCCeEEEEeCCC-CcchhhhcCCCeEEEE---e
Confidence 35778888877744322 1 1 1245788887543 3788999999999965 66533 22332212 111111 1
Q ss_pred CcchHHHHHHHH--cCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHHhCC
Q 007215 446 DVLCTATAEALA--MGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEALAND 499 (612)
Q Consensus 446 E~fgl~llEAMA--~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll~~~ 499 (612)
..+...+.+.|. +|+|.+..+.+ |. .+.+++-++|.+++..+
T Consensus 206 ~~~~~~~A~~Le~~~GiP~~~~~~PiGi------------~~T~~~l~~la~~~g~~ 250 (407)
T TIGR01279 206 QPYLSDTATTLRRERGAKVLSAPFPFGP------------DGTRRFLEAIAAEFGIE 250 (407)
T ss_pred chHHHHHHHHHHHHhCCccccCCCCcCH------------HHHHHHHHHHHHHhCcC
Confidence 123445777774 79998765433 22 24567777777777444
No 309
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.74 E-value=5e+02 Score=24.01 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=21.8
Q ss_pred HHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 432 SLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 432 ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
-+..+|+++..+..+..-..+.+....+.+|-..+.+
T Consensus 67 dl~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~ 103 (157)
T PRK06719 67 DIKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDG 103 (157)
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCC
Confidence 4677888877765555544444444445566655544
No 310
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=21.69 E-value=5.1e+02 Score=26.57 Aligned_cols=63 Identities=22% Similarity=0.167 Sum_probs=40.3
Q ss_pred ccc-eEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEecCCH----HHHHHHHHHHHhCC
Q 007215 435 GYK-VFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTS----EDFVARVKEALAND 499 (612)
Q Consensus 435 ~aD-v~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~~d~----~~la~aI~~ll~~~ 499 (612)
.+| +.|.|...+.+.-.+-+|...|.|||+.+...... .....++-.|. ...++.+.+.+...
T Consensus 91 ~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~--~~~~~~vg~dn~~~G~~~a~~l~~~~~~~ 158 (322)
T COG1879 91 GVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPGP--GDRVAYVGSDNYKAGRLAAEYLAKALGGK 158 (322)
T ss_pred CCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCCC--CceeEEEecCcHHHHHHHHHHHHHHhCCC
Confidence 345 66677777888889999999999999998875432 22222332222 23455666666443
No 311
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=21.58 E-value=4.3e+02 Score=24.48 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=47.4
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC---H-HHH----HHHHHHcCCceEEecCCCCHHHHHhc
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED---A-YEV----QSAAKRLDLNLNFQKGRDHADDSLHG 435 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~---~-~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~ 435 (612)
..+.|+|- ....=...++.++.++ +..+.+++.... . ..+ ++.+.+.+..+.+. ++.++.++.
T Consensus 3 l~i~~vGD-~~~rv~~Sl~~~~~~~-----g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~---~~~~e~l~~ 73 (158)
T PF00185_consen 3 LKIAYVGD-GHNRVAHSLIELLAKF-----GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT---DDIEEALKG 73 (158)
T ss_dssp EEEEEESS-TTSHHHHHHHHHHHHT-----TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE---SSHHHHHTT
T ss_pred CEEEEECC-CCChHHHHHHHHHHHc-----CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE---eCHHHhcCC
Confidence 47889995 3344466777777777 466888886441 1 122 34445556556665 777799999
Q ss_pred cceEEeccCC
Q 007215 436 YKVFINPSIS 445 (612)
Q Consensus 436 aDv~V~PS~~ 445 (612)
+|+....+..
T Consensus 74 aDvvy~~~~~ 83 (158)
T PF00185_consen 74 ADVVYTDRWQ 83 (158)
T ss_dssp -SEEEEESSS
T ss_pred CCEEEEcCcc
Confidence 9998777654
No 312
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=21.57 E-value=2.9e+02 Score=30.52 Aligned_cols=88 Identities=19% Similarity=0.117 Sum_probs=49.8
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhcc--ceEEeccCCCcchHHH
Q 007215 375 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINPSISDVLCTAT 452 (612)
Q Consensus 375 ~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~a--Dv~V~PS~~E~fgl~l 452 (612)
.+|++.|.+...+++ .+.+.+++......+++.....+...+++.+.+...++.... |++|+...--.--...
T Consensus 92 g~Ni~lL~~q~~~f~-----p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pT 166 (454)
T PLN02696 92 GSNVTLLADQVRKFK-----PKLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPT 166 (454)
T ss_pred CCCHHHHHHHHHHhC-----CCEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCccccchHHH
Confidence 467777777776663 245555543333444443321111244444444455666644 7887775421112256
Q ss_pred HHHHHcCCcEEeeCC
Q 007215 453 AEALAMGKFVICADH 467 (612)
Q Consensus 453 lEAMA~G~PVVas~~ 467 (612)
++|+.+|+.|...|-
T Consensus 167 l~AIkaGK~VALANK 181 (454)
T PLN02696 167 VAAIEAGKDIALANK 181 (454)
T ss_pred HHHHHCCCcEEEecH
Confidence 999999999888775
No 313
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=21.54 E-value=2.4e+02 Score=29.51 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=33.4
Q ss_pred HHHHHHcCCcEEeeCCCCccccccCCcE--Ee-cCCHHHHHHHHHHHHh
Q 007215 452 TAEALAMGKFVICADHPSNEFFRSFPNC--LT-YKTSEDFVARVKEALA 497 (612)
Q Consensus 452 llEAMA~G~PVVas~~gg~~~i~~~~~g--~l-~~d~~~la~aI~~ll~ 497 (612)
+-+.+..|.+||++..||.+.+.++..- .. +.|.+.+|..+...+.
T Consensus 175 I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~ 223 (310)
T TIGR00746 175 IKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVN 223 (310)
T ss_pred HHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhC
Confidence 3347899999999988888877653221 11 2688999998888874
No 314
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=21.49 E-value=5.1e+02 Score=28.36 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=30.8
Q ss_pred EEEEecc-CCccCHHHHHHHH-HHhhccCCCeEEEEEecCCCHH
Q 007215 366 AYFLGKM-VWAKGYRELIDLL-AKHKNDLDGFKLDVFGNGEDAY 407 (612)
Q Consensus 366 il~vGrl-~~~Kg~~~Li~A~-~~l~~~~~~~~LvIvG~g~~~~ 407 (612)
|+-+|.. ....|=+.++.++ ..+++..|++.+++.-..|...
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t 46 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSS 46 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccch
Confidence 4444443 3568888888876 7778888999999998877653
No 315
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=21.47 E-value=3e+02 Score=28.44 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=51.2
Q ss_pred HHHHHHHhhccCCC-eEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhcc--ceEEeccCCCcchHHHHHHHH
Q 007215 381 LIDLLAKHKNDLDG-FKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINPSISDVLCTATAEALA 457 (612)
Q Consensus 381 Li~A~~~l~~~~~~-~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~a--Dv~V~PS~~E~fgl~llEAMA 457 (612)
.+.++... ++ +.++-+. ..+.+..++.+++++.. -...+.+++++.- |+++..+...--.-.++.|+.
T Consensus 19 ~~~~~~~~----~~~~~~vav~-d~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~ 89 (342)
T COG0673 19 HLPALAAL----GGGLELVAVV-DRDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATPNALHAELALAALE 89 (342)
T ss_pred hHHHHHhC----CCceEEEEEe-cCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHh
Confidence 44555544 23 3333333 34556678888888855 3456677888875 777777666555556699999
Q ss_pred cCCcEEeeC
Q 007215 458 MGKFVICAD 466 (612)
Q Consensus 458 ~G~PVVas~ 466 (612)
.|++|+|=.
T Consensus 90 aGkhVl~EK 98 (342)
T COG0673 90 AGKHVLCEK 98 (342)
T ss_pred cCCEEEEcC
Confidence 999999864
No 316
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=21.47 E-value=7.3e+02 Score=26.26 Aligned_cols=120 Identities=8% Similarity=0.052 Sum_probs=68.9
Q ss_pred cCCeEEEeChh---hhccC-CCcEEEeCCCCCCCCCCCc----cchhhhhhcc-CCCCcEEEEEeccCCccCHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLP-KSVICNVHGVNPKFLQIGE----KVATDREQGQ-QAFSKGAYFLGKMVWAKGYRELIDLL 385 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~-~~~i~vinGVd~~~f~~~~----~~~~~~~~~~-~~~~~~il~vGrl~~~Kg~~~Li~A~ 385 (612)
++|.|+.-... .+++. ...+.|||+-+ ...+|.. .-...+.+|. .-....+.|+|-+. ..=...++.++
T Consensus 100 y~D~iviR~~~~~~~~~~a~~~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~-~~v~~S~~~~~ 177 (334)
T PRK12562 100 MYDGIQYRGHGQEVVETLAEYAGVPVWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDAR-NNMGNSMLEAA 177 (334)
T ss_pred hCCEEEEECCchHHHHHHHHhCCCCEEECCC-CCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCC-CCHHHHHHHHH
Confidence 47887776653 22232 25678889765 4455542 2223344431 12246889999763 23455667777
Q ss_pred HHhhccCCCeEEEEEecCCCH--HH----HHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 386 AKHKNDLDGFKLDVFGNGEDA--YE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 386 ~~l~~~~~~~~LvIvG~g~~~--~~----l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
.++ ++.+.+++..... ++ .++.+++.|..+.. ..+.++.++.+||+.....
T Consensus 178 ~~~-----G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~---~~d~~~a~~~aDvvyt~~w 234 (334)
T PRK12562 178 ALT-----GLDLRLVAPQACWPEASLVAECSALAQKHGGKITL---TEDIAAGVKGADFIYTDVW 234 (334)
T ss_pred HHc-----CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEEcCc
Confidence 665 5788888853311 22 23344555544433 4566788999998877653
No 317
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=21.45 E-value=1.7e+02 Score=25.40 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHhhccCCCeEEEEEecCCCH----HHHHHHHHHcCCceEEec
Q 007215 383 DLLAKHKNDLDGFKLDVFGNGEDA----YEVQSAAKRLDLNLNFQK 424 (612)
Q Consensus 383 ~A~~~l~~~~~~~~LvIvG~g~~~----~~l~~~~~~l~l~v~f~g 424 (612)
+.+..+....|+..++|+|.|... +++++..++.|+.+.+..
T Consensus 42 ~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~ 87 (110)
T PF04430_consen 42 EDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMD 87 (110)
T ss_dssp HHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-
T ss_pred HHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEEC
Confidence 445555555577889999998764 778888888888777643
No 318
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=21.44 E-value=7.1e+02 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=29.1
Q ss_pred CCCHHHHHh--ccceEEeccC-CCcchHHHHHHHH--cCCcEEee
Q 007215 426 RDHADDSLH--GYKVFINPSI-SDVLCTATAEALA--MGKFVICA 465 (612)
Q Consensus 426 ~~~~~~ll~--~aDv~V~PS~-~E~fgl~llEAMA--~G~PVVas 465 (612)
..+..+.++ .+|++|=.|. .-.|.--++++|+ |..|+|-.
T Consensus 94 ~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 94 GKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 345557777 6688888885 3567778888888 57788766
No 319
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=21.26 E-value=6.6e+02 Score=28.38 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=59.1
Q ss_pred EEeCCCCCCCCCCCcc----chhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC--HHH
Q 007215 335 CNVHGVNPKFLQIGEK----VATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYE 408 (612)
Q Consensus 335 ~vinGVd~~~f~~~~~----~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~ 408 (612)
.+||+-|.+..+|... -...+.+|..-....+.|+|-+...+=...++.++..+ ..+.+.+++.... .++
T Consensus 142 ~VINAgdg~~~HPTQaLaDl~TI~E~~G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~----g~~~v~l~~P~~~~~p~~ 217 (525)
T PRK13376 142 AFINAGDGKHEHPTQELLDEFTFLEQNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIF----KNVKVDLIAPEELAMPEH 217 (525)
T ss_pred eEEECCCCCCCCchHHHHHHHHHHHHcCCCcCCCEEEEECCCCCCcHHHHHHHHHHhc----CCcEEEEECCccccCCHH
Confidence 4679887766777532 22344454222346889999774444466777777665 2378888885332 244
Q ss_pred HHHHHHHcCCceEEecCCCCHHHHHhccce
Q 007215 409 VQSAAKRLDLNLNFQKGRDHADDSLHGYKV 438 (612)
Q Consensus 409 l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv 438 (612)
+.+.+++.|..+.. .++.++.++.||+
T Consensus 218 ~~~~a~~~G~~v~i---~~d~~eav~~AD~ 244 (525)
T PRK13376 218 YVEKMKKNGFEVRI---FSSIEEYLSQKDV 244 (525)
T ss_pred HHHHHHHcCCeEEE---EcCHHHHhccCCc
Confidence 44555555544443 3456688999993
No 320
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=21.16 E-value=4.8e+02 Score=27.76 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=45.5
Q ss_pred HHhhccCCCe-EEEEEecCCCHHHHHHHHHH-cCCceEE-ecCCCCHH---HHHhccceEEeccCCCcchHHHH-HHHHc
Q 007215 386 AKHKNDLDGF-KLDVFGNGEDAYEVQSAAKR-LDLNLNF-QKGRDHAD---DSLHGYKVFINPSISDVLCTATA-EALAM 458 (612)
Q Consensus 386 ~~l~~~~~~~-~LvIvG~g~~~~~l~~~~~~-l~l~v~f-~g~~~~~~---~ll~~aDv~V~PS~~E~fgl~ll-EAMA~ 458 (612)
..|.+. .+. +++++|. +.+.+++++++ .+..+.+ .-.+.+.+ ++++.+|++|+.+-.- ++..++ -|+.+
T Consensus 15 ~~L~~~-~~~~~v~va~r--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~ 90 (386)
T PF03435_consen 15 RLLARR-GPFEEVTVADR--NPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEA 90 (386)
T ss_dssp HHHHCT-TCE-EEEEEES--SHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHH
T ss_pred HHHhcC-CCCCcEEEEEC--CHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHh
Confidence 344443 344 7888885 55666666665 3334444 33444444 7889999999876433 555555 45788
Q ss_pred CCcEEeeC
Q 007215 459 GKFVICAD 466 (612)
Q Consensus 459 G~PVVas~ 466 (612)
|++.|-+.
T Consensus 91 g~~yvD~~ 98 (386)
T PF03435_consen 91 GVHYVDTS 98 (386)
T ss_dssp T-EEEESS
T ss_pred CCCeeccc
Confidence 99999853
No 321
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.83 E-value=2.3e+02 Score=24.59 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=40.7
Q ss_pred EEEEEecCCCH---HHHHHHHHHcCCceEEecCCCCHH---HHHhccceEEeccCC-Ccc--hHHHHHHHHcCCcEEeeC
Q 007215 396 KLDVFGNGEDA---YEVQSAAKRLDLNLNFQKGRDHAD---DSLHGYKVFINPSIS-DVL--CTATAEALAMGKFVICAD 466 (612)
Q Consensus 396 ~LvIvG~g~~~---~~l~~~~~~l~l~v~f~g~~~~~~---~ll~~aDv~V~PS~~-E~f--gl~llEAMA~G~PVVas~ 466 (612)
++.++|.|... .++.......+..+.+........ ..+..-|+++.-|.. +.- --.+-.|-..|.|||+--
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT 81 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAIT 81 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 47888888665 444444455565555543322111 223444888888876 222 223445667799999864
Q ss_pred C
Q 007215 467 H 467 (612)
Q Consensus 467 ~ 467 (612)
.
T Consensus 82 ~ 82 (128)
T cd05014 82 G 82 (128)
T ss_pred C
Confidence 3
No 322
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=20.63 E-value=7.4e+02 Score=24.55 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=41.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcch-HHHHHHHHcCCcEEeeCCCC
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLC-TATAEALAMGKFVICADHPS 469 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fg-l~llEAMA~G~PVVas~~gg 469 (612)
+.++.++...-. ++++.+++.- .+++...--+ ++.+..+++++..+-.+... ...-+|-+.|.+|.+.+.+.
T Consensus 48 gA~VtVVap~i~-~el~~l~~~~--~i~~~~r~~~-~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~ 120 (223)
T PRK05562 48 GCYVYILSKKFS-KEFLDLKKYG--NLKLIKGNYD-KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYK 120 (223)
T ss_pred CCEEEEEcCCCC-HHHHHHHhCC--CEEEEeCCCC-hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcc
Confidence 567777775332 4566655432 2555443222 24567777666654443333 34556667899999887653
No 323
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=20.63 E-value=1.2e+03 Score=25.88 Aligned_cols=108 Identities=10% Similarity=0.095 Sum_probs=60.4
Q ss_pred ccCHHHHHHHHHH-hhcc-------CCCeEEEEEecCC---CHHHHHHHHHHcCCceE-EecCCCCHHHHHhcc--ceEE
Q 007215 375 AKGYRELIDLLAK-HKND-------LDGFKLDVFGNGE---DAYEVQSAAKRLDLNLN-FQKGRDHADDSLHGY--KVFI 440 (612)
Q Consensus 375 ~Kg~~~Li~A~~~-l~~~-------~~~~~LvIvG~g~---~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~a--Dv~V 440 (612)
..|.+...+++-+ +... ..+-.+-|+|.-. +..+++++.+++|+++. .+..-...+++-... .+-+
T Consensus 180 ~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~lni 259 (466)
T TIGR01282 180 SLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLNL 259 (466)
T ss_pred hHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEE
Confidence 3466666665533 2211 1134677777432 45789999999999843 344444555454444 4443
Q ss_pred eccCCCcchHHHHHHHH--cCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 441 NPSISDVLCTATAEALA--MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 441 ~PS~~E~fgl~llEAMA--~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
..+.. .+..+.|.|- +|+|.+..+.=|. .+.+++-++|.+++
T Consensus 260 v~~~~--~~~~~A~~Le~~fGiP~~~~~~~Gi------------~~T~~~Lr~ia~~~ 303 (466)
T TIGR01282 260 IHCYR--SMNYISRHMEEKYGIPWMEYNFFGP------------TKIAESLRKIAEFF 303 (466)
T ss_pred EEChH--HHHHHHHHHHHHhCCceEeCCCCCH------------HHHHHHHHHHHHHH
Confidence 33322 2235666664 7999886421011 34566777777777
No 324
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=20.32 E-value=3.5e+02 Score=27.58 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHHhhccCCCe-EE-EEEecCCC-----HHHHHHHHHHcCCceEE--ecCCCCHH----HHHhccceEEec
Q 007215 376 KGYRELIDLLAKHKNDLDGF-KL-DVFGNGED-----AYEVQSAAKRLDLNLNF--QKGRDHAD----DSLHGYKVFINP 442 (612)
Q Consensus 376 Kg~~~Li~A~~~l~~~~~~~-~L-vIvG~g~~-----~~~l~~~~~~l~l~v~f--~g~~~~~~----~ll~~aDv~V~P 442 (612)
.-+...++.+.++. |++ ++ +++..... .+.+++.++++|+++.. .....+.+ .+....|+++.+
T Consensus 115 ~~~~~~l~l~~~l~---P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~ 191 (294)
T PF04392_consen 115 PPIEKQLELIKKLF---PDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLL 191 (294)
T ss_dssp --HHHHHHHHHHHS---TT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-
T ss_pred cCHHHHHHHHHHhC---CCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEE
Confidence 34455555555553 332 33 34443322 15666677888877432 33333433 233345766666
Q ss_pred cCC---CcchHHHHHHHHcCCcEEeeC
Q 007215 443 SIS---DVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 443 S~~---E~fgl~llEAMA~G~PVVas~ 466 (612)
... ..+...+..+..+++||+++.
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 192 PDNLVDSNFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp S-HHHHHTHHHHHHHCCCTT--EEESS
T ss_pred CCcchHhHHHHHHHHHHhcCCCEEECC
Confidence 432 334445567778999999975
No 325
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=20.32 E-value=3.3e+02 Score=30.47 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=34.7
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccc-hhHH-----HHH-HHHHHHHHHhcCCeEE
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG-ALQA-----FFV-KHINNWVTRAYCDKVL 320 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~-~~~~-----~~~-~~i~~~~~~~~ad~vI 320 (612)
..+||+||-+-... +.. +...+.+.+ |.+.+-|..--.- ..... .+.. .+. +.....++.-+||.||
T Consensus 399 ~~~PdlI~GnYsDg-nlv--A~LLs~~lgv~~~~iaHsLek~K--y~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfII 473 (550)
T PF00862_consen 399 QGKPDLIIGNYSDG-NLV--ASLLSRKLGVTQCFIAHSLEKTK--YEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFII 473 (550)
T ss_dssp TS--SEEEEEHHHH-HHH--HHHHHHHHT-EEEEE-SS-HHHH--HHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEE
T ss_pred CCCCcEEEeccCcc-hHH--HHHHHhhcCCceehhhhcccccc--ccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEE
Confidence 46899999853221 122 346777888 9999999863221 11111 1111 111 2222233334689999
Q ss_pred EeCh
Q 007215 321 RLSA 324 (612)
Q Consensus 321 ~~S~ 324 (612)
+.+.
T Consensus 474 tST~ 477 (550)
T PF00862_consen 474 TSTY 477 (550)
T ss_dssp ESSH
T ss_pred Ecch
Confidence 9887
No 326
>PRK06091 membrane protein FdrA; Validated
Probab=20.28 E-value=5.8e+02 Score=29.01 Aligned_cols=51 Identities=14% Similarity=-0.050 Sum_probs=35.6
Q ss_pred CcchHHHHHHH-HcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 446 DVLCTATAEAL-AMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 446 E~fgl~llEAM-A~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
|+..-.+++++ .+|+|||+...|..+.-....+.+.+.+.+++++....+.
T Consensus 265 E~v~~~fl~aar~~~KPVVvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la 316 (555)
T PRK06091 265 EAVRLKIINAMKATGKPVVALFLGYTPAVARDENVWFASTLDEAARLACLLS 316 (555)
T ss_pred hHHHHHHHHHHhhCCCCEEEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHh
Confidence 55555777765 5699999999997654333334444499999988777665
No 327
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.13 E-value=74 Score=24.35 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCcEEee
Q 007215 450 TATAEALAMGKFVICA 465 (612)
Q Consensus 450 l~llEAMA~G~PVVas 465 (612)
-.+.|++-+|.||+|-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 3689999999999986
No 328
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=20.07 E-value=2.9e+02 Score=28.54 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=22.6
Q ss_pred CHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEE--eeCCCCc
Q 007215 428 HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVI--CADHPSN 470 (612)
Q Consensus 428 ~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVV--as~~gg~ 470 (612)
+..+.++.+|+.++..-.....-..++.|.-|.-+| +++.|+.
T Consensus 203 ~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred HHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCc
Confidence 334788899999987532112222344455555443 3344444
Done!