Query 007215
Match_columns 612
No_of_seqs 436 out of 3143
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 20:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 2.4E-36 8.3E-41 321.2 28.2 346 139-530 3-380 (394)
2 3fro_A GLGA glycogen synthase; 100.0 5.3E-37 1.8E-41 330.7 23.2 276 249-532 120-433 (439)
3 3c48_A Predicted glycosyltrans 100.0 2.2E-35 7.6E-40 319.4 24.6 363 136-532 16-428 (438)
4 2jjm_A Glycosyl transferase, g 100.0 1.4E-34 4.8E-39 309.1 22.3 277 241-531 89-387 (394)
5 2r60_A Glycosyl transferase, g 100.0 7.9E-35 2.7E-39 321.4 20.9 368 139-532 6-462 (499)
6 2x6q_A Trehalose-synthase TRET 100.0 3.1E-34 1.1E-38 308.7 24.8 343 139-525 39-412 (416)
7 2qzs_A Glycogen synthase; glyc 100.0 6E-34 2.1E-38 312.8 20.4 272 250-530 128-477 (485)
8 3vue_A GBSS-I, granule-bound s 100.0 4.5E-33 1.5E-37 310.1 26.0 211 315-530 241-512 (536)
9 1rzu_A Glycogen synthase 1; gl 100.0 2.1E-33 7.1E-38 308.5 23.0 277 248-533 127-479 (485)
10 2gek_A Phosphatidylinositol ma 100.0 6.8E-34 2.3E-38 303.8 16.5 349 137-533 17-387 (406)
11 2iuy_A Avigt4, glycosyltransfe 100.0 3.3E-33 1.1E-37 292.7 16.5 303 140-531 3-337 (342)
12 2iw1_A Lipopolysaccharide core 100.0 9.7E-33 3.3E-37 291.6 16.5 339 141-525 1-369 (374)
13 3s28_A Sucrose synthase 1; gly 100.0 8.5E-32 2.9E-36 310.2 25.2 272 250-525 406-767 (816)
14 3oy2_A Glycosyltransferase B73 100.0 1.3E-32 4.5E-37 295.5 17.1 335 141-533 1-394 (413)
15 2x0d_A WSAF; GT4 family, trans 100.0 1.5E-30 5.2E-35 281.0 14.8 334 138-525 44-407 (413)
16 2hy7_A Glucuronosyltransferase 100.0 1.7E-28 5.7E-33 264.5 16.1 233 251-525 124-377 (406)
17 1f0k_A MURG, UDP-N-acetylgluco 99.9 7.2E-26 2.5E-30 238.6 20.9 247 241-525 86-355 (364)
18 2vsy_A XCC0866; transferase, g 99.9 9.8E-26 3.3E-30 252.4 17.6 326 137-531 202-561 (568)
19 3beo_A UDP-N-acetylglucosamine 99.9 4.6E-25 1.6E-29 233.1 14.7 265 241-525 85-374 (375)
20 2bfw_A GLGA glycogen synthase; 99.9 4.3E-24 1.5E-28 205.9 13.7 171 336-508 2-190 (200)
21 1uqt_A Alpha, alpha-trehalose- 99.9 5.5E-24 1.9E-28 233.4 13.1 188 332-525 219-452 (482)
22 3nb0_A Glycogen [starch] synth 99.9 7E-23 2.4E-27 226.8 20.3 275 249-530 179-634 (725)
23 1vgv_A UDP-N-acetylglucosamine 99.9 3.2E-24 1.1E-28 227.6 8.8 268 241-525 76-374 (384)
24 3qhp_A Type 1 capsular polysac 99.9 1.5E-23 5.1E-28 196.1 11.8 153 363-518 2-165 (166)
25 1v4v_A UDP-N-acetylglucosamine 99.9 2E-22 6.8E-27 213.5 11.8 268 241-530 81-365 (376)
26 2f9f_A First mannosyl transfer 99.9 1E-21 3.5E-26 186.4 11.7 140 357-500 17-164 (177)
27 2xci_A KDO-transferase, 3-deox 99.8 3.4E-20 1.1E-24 197.4 21.3 234 241-511 101-357 (374)
28 3t5t_A Putative glycosyltransf 99.8 1.8E-20 6E-25 204.0 19.2 261 250-525 148-471 (496)
29 3otg_A CALG1; calicheamicin, T 99.7 1.7E-16 6E-21 169.7 17.1 257 241-525 120-408 (412)
30 3dzc_A UDP-N-acetylglucosamine 99.7 2.3E-17 7.9E-22 176.8 10.0 265 240-523 100-393 (396)
31 3rhz_A GTF3, nucleotide sugar 99.6 3.5E-16 1.2E-20 163.8 11.8 211 250-496 73-302 (339)
32 3s2u_A UDP-N-acetylglucosamine 99.6 9.8E-15 3.4E-19 154.6 17.8 236 241-508 82-333 (365)
33 3ot5_A UDP-N-acetylglucosamine 99.6 1.3E-15 4.5E-20 163.5 10.5 247 240-506 103-368 (403)
34 2iyf_A OLED, oleandomycin glyc 99.6 1.3E-13 4.5E-18 148.4 21.3 262 241-525 94-399 (430)
35 3tsa_A SPNG, NDP-rhamnosyltran 99.5 9.1E-14 3.1E-18 147.6 16.5 258 241-524 104-387 (391)
36 4fzr_A SSFS6; structural genom 99.5 1.4E-13 4.9E-18 146.7 16.0 144 362-520 227-395 (398)
37 3ia7_A CALG4; glycosysltransfe 99.4 6.7E-12 2.3E-16 133.2 20.6 260 241-525 92-398 (402)
38 3oti_A CALG3; calicheamicin, T 99.4 1.1E-12 3.8E-17 139.8 11.9 146 363-524 233-396 (398)
39 4hwg_A UDP-N-acetylglucosamine 99.4 7.6E-13 2.6E-17 141.0 10.2 237 240-499 83-343 (385)
40 3rsc_A CALG2; TDP, enediyne, s 99.3 7E-11 2.4E-15 126.3 23.2 147 363-524 248-412 (415)
41 2p6p_A Glycosyl transferase; X 99.3 1.2E-10 4E-15 123.3 20.0 223 242-498 98-347 (384)
42 2yjn_A ERYCIII, glycosyltransf 99.1 9.4E-10 3.2E-14 118.9 17.3 147 364-525 269-435 (441)
43 2iya_A OLEI, oleandomycin glyc 98.9 1.3E-07 4.6E-12 101.2 24.7 125 363-499 256-390 (424)
44 3h4t_A Glycosyltransferase GTF 98.9 4.8E-08 1.6E-12 104.3 20.7 121 362-497 221-351 (404)
45 1l5w_A Maltodextrin phosphoryl 98.8 4.4E-08 1.5E-12 110.6 15.5 167 360-530 523-731 (796)
46 2o6l_A UDP-glucuronosyltransfe 98.8 2.1E-08 7.2E-13 93.5 10.7 119 363-498 22-154 (170)
47 3q3e_A HMW1C-like glycosyltran 98.8 1.4E-08 4.9E-13 112.4 9.8 231 241-499 339-589 (631)
48 1iir_A Glycosyltransferase GTF 98.7 6.6E-07 2.3E-11 95.6 20.1 119 363-498 239-368 (415)
49 4amg_A Snogd; transferase, pol 98.6 4.9E-08 1.7E-12 103.4 9.0 124 364-498 239-368 (400)
50 2c4m_A Glycogen phosphorylase; 98.5 6.3E-07 2.2E-11 101.2 14.6 167 360-530 513-720 (796)
51 1rrv_A Glycosyltransferase GTF 98.5 5.8E-06 2E-10 88.2 21.6 119 363-498 238-369 (416)
52 2gj4_A Glycogen phosphorylase, 98.2 1.9E-06 6.6E-11 97.7 9.5 167 360-530 547-755 (824)
53 3hbm_A UDP-sugar hydrolase; PS 98.2 0.00012 4.3E-09 73.9 19.7 93 364-467 159-252 (282)
54 4gyw_A UDP-N-acetylglucosamine 97.7 0.00018 6.1E-09 82.4 13.1 175 347-525 507-703 (723)
55 2jzc_A UDP-N-acetylglucosamine 95.8 0.01 3.6E-07 57.5 6.1 47 418-468 114-161 (224)
56 1psw_A ADP-heptose LPS heptosy 95.2 0.039 1.3E-06 56.6 8.1 106 353-465 170-286 (348)
57 2c1x_A UDP-glucose flavonoid 3 95.2 0.042 1.4E-06 59.1 8.6 75 419-498 326-412 (456)
58 3hbf_A Flavonoid 3-O-glucosylt 94.9 0.11 3.9E-06 55.7 10.9 128 362-497 272-413 (454)
59 2pq6_A UDP-glucuronosyl/UDP-gl 94.4 0.13 4.5E-06 55.5 10.3 77 417-498 352-439 (482)
60 1ygp_A Yeast glycogen phosphor 94.2 0.22 7.6E-06 56.6 11.4 130 361-490 598-768 (879)
61 3tov_A Glycosyl transferase fa 93.3 0.21 7.1E-06 51.6 8.8 106 357-469 179-290 (349)
62 2acv_A Triterpene UDP-glucosyl 91.6 0.65 2.2E-05 49.8 10.2 122 365-497 279-424 (463)
63 2gt1_A Lipopolysaccharide hept 91.1 0.84 2.9E-05 46.1 10.0 126 364-497 180-321 (326)
64 2vch_A Hydroquinone glucosyltr 88.9 2 6.8E-05 46.2 11.2 74 421-497 342-428 (480)
65 3l7i_A Teichoic acid biosynthe 83.8 3.2 0.00011 47.1 9.8 169 316-496 479-681 (729)
66 3gt7_A Sensor protein; structu 61.3 53 0.0018 28.1 10.1 107 394-500 7-129 (154)
67 3uuw_A Putative oxidoreductase 53.8 40 0.0014 33.3 8.8 69 392-466 29-97 (308)
68 3u7q_A Nitrogenase molybdenum- 53.8 1.9E+02 0.0067 30.7 14.7 90 375-466 192-298 (492)
69 4had_A Probable oxidoreductase 53.2 58 0.002 32.6 10.1 77 381-466 39-117 (350)
70 4fb5_A Probable oxidoreductase 51.1 38 0.0013 34.4 8.3 97 365-466 27-125 (393)
71 4ekn_B Aspartate carbamoyltran 50.6 32 0.0011 34.5 7.3 122 315-444 96-227 (306)
72 1vi6_A 30S ribosomal protein S 49.6 31 0.001 32.5 6.5 99 374-474 49-154 (208)
73 2pln_A HP1043, response regula 48.7 75 0.0026 26.2 8.7 101 394-497 18-132 (137)
74 3mz0_A Inositol 2-dehydrogenas 48.1 73 0.0025 31.9 9.8 71 392-466 25-97 (344)
75 3grc_A Sensor protein, kinase; 48.1 1.1E+02 0.0039 25.0 9.9 104 394-497 6-126 (140)
76 4h3v_A Oxidoreductase domain p 46.5 60 0.0021 32.8 9.0 69 394-467 37-107 (390)
77 2zay_A Response regulator rece 45.4 1.1E+02 0.0038 25.4 9.4 105 394-498 8-128 (147)
78 4hkt_A Inositol 2-dehydrogenas 44.7 85 0.0029 31.1 9.7 75 381-466 18-94 (331)
79 3e9m_A Oxidoreductase, GFO/IDH 44.6 1.3E+02 0.0045 29.7 11.1 78 380-466 19-98 (330)
80 1e2b_A Enzyme IIB-cellobiose; 42.4 15 0.00051 30.6 2.9 63 397-460 7-74 (106)
81 3kht_A Response regulator; PSI 42.4 1.4E+02 0.0048 24.6 9.5 104 394-497 5-127 (144)
82 3db2_A Putative NADPH-dependen 41.8 88 0.003 31.4 9.3 70 392-467 27-98 (354)
83 3moi_A Probable dehydrogenase; 41.5 85 0.0029 32.1 9.2 68 393-466 26-95 (387)
84 3jte_A Response regulator rece 41.4 1.5E+02 0.0051 24.4 9.7 103 395-497 4-122 (143)
85 3u80_A 3-dehydroquinate dehydr 41.4 45 0.0016 29.6 5.9 90 407-496 36-146 (151)
86 1p9l_A Dihydrodipicolinate red 40.7 78 0.0027 30.4 8.1 73 396-468 2-78 (245)
87 3cg4_A Response regulator rece 39.8 1.6E+02 0.0053 24.2 9.6 103 394-496 7-125 (142)
88 3h5i_A Response regulator/sens 39.4 1.6E+02 0.0055 24.2 10.2 104 394-497 5-123 (140)
89 1mio_A Nitrogenase molybdenum 39.0 3.9E+02 0.013 28.6 14.3 108 375-496 182-302 (533)
90 1zq6_A Otcase, ornithine carba 38.7 58 0.002 33.3 7.1 102 332-443 156-273 (359)
91 3nbm_A PTS system, lactose-spe 38.4 62 0.0021 26.9 6.1 69 397-466 10-85 (108)
92 1fy2_A Aspartyl dipeptidase; s 37.5 58 0.002 30.8 6.6 89 378-469 17-123 (229)
93 3bch_A 40S ribosomal protein S 37.1 51 0.0017 31.9 6.0 100 374-474 84-190 (253)
94 3ehd_A Uncharacterized conserv 37.1 58 0.002 29.3 6.1 66 431-496 65-161 (162)
95 4f3y_A DHPR, dihydrodipicolina 37.0 46 0.0016 32.6 5.9 43 427-469 65-107 (272)
96 3euw_A MYO-inositol dehydrogen 36.6 1.5E+02 0.0052 29.4 10.1 90 365-467 6-97 (344)
97 4ep1_A Otcase, ornithine carba 36.0 89 0.003 31.7 7.9 118 315-444 125-256 (340)
98 3ec7_A Putative dehydrogenase; 35.8 1E+02 0.0036 31.0 8.7 93 364-466 24-118 (357)
99 1dxh_A Ornithine carbamoyltran 35.7 64 0.0022 32.7 6.8 120 315-444 100-233 (335)
100 3rc1_A Sugar 3-ketoreductase; 35.7 1.1E+02 0.0037 30.8 8.8 91 364-466 28-120 (350)
101 1ydw_A AX110P-like protein; st 35.7 2.4E+02 0.0082 28.2 11.5 92 364-466 7-102 (362)
102 2l2q_A PTS system, cellobiose- 35.4 1.2E+02 0.004 25.0 7.4 90 397-497 8-104 (109)
103 3n8k_A 3-dehydroquinate dehydr 35.4 56 0.0019 29.5 5.5 88 409-496 62-167 (172)
104 1pvv_A Otcase, ornithine carba 35.0 98 0.0034 31.0 8.1 118 315-444 101-232 (315)
105 1h05_A 3-dehydroquinate dehydr 35.0 59 0.002 28.7 5.5 90 407-496 34-141 (146)
106 3rot_A ABC sugar transporter, 34.9 1.8E+02 0.0062 27.7 10.1 63 436-498 62-126 (297)
107 3cnb_A DNA-binding response re 34.9 1.8E+02 0.0063 23.6 10.3 105 394-498 8-130 (143)
108 3j20_B 30S ribosomal protein S 34.9 45 0.0015 31.2 5.1 99 374-474 45-150 (202)
109 3nva_A CTP synthase; rossman f 34.8 2.5E+02 0.0086 30.2 11.5 207 250-468 134-388 (535)
110 3lte_A Response regulator; str 34.8 1.8E+02 0.0061 23.4 9.6 104 394-497 6-124 (132)
111 2w37_A Ornithine carbamoyltran 34.5 93 0.0032 31.8 7.8 119 315-444 122-254 (359)
112 2iz6_A Molybdenum cofactor car 34.3 39 0.0013 30.9 4.5 64 431-497 103-173 (176)
113 3ezy_A Dehydrogenase; structur 34.2 1.6E+02 0.0055 29.3 9.8 70 392-466 24-95 (344)
114 2pju_A Propionate catabolism o 33.8 1.3E+02 0.0043 28.6 8.2 99 379-496 93-192 (225)
115 3u3x_A Oxidoreductase; structu 33.1 2.6E+02 0.009 28.0 11.3 91 364-466 27-119 (361)
116 1ml4_A Aspartate transcarbamoy 33.1 57 0.002 32.6 5.9 104 332-444 121-230 (308)
117 2xzm_B RPS0E; ribosome, transl 33.0 44 0.0015 32.2 4.8 96 375-471 47-150 (241)
118 3lwz_A 3-dehydroquinate dehydr 33.0 59 0.002 28.9 5.2 89 408-496 40-146 (153)
119 2i6u_A Otcase, ornithine carba 32.8 1.6E+02 0.0054 29.4 9.1 102 332-444 115-226 (307)
120 2ho3_A Oxidoreductase, GFO/IDH 32.7 1.2E+02 0.0041 29.9 8.4 77 381-466 16-93 (325)
121 1rcu_A Conserved hypothetical 32.4 41 0.0014 31.3 4.4 63 431-495 114-192 (195)
122 1k68_A Phytochrome response re 31.9 2E+02 0.0069 23.2 9.4 103 395-497 3-130 (140)
123 2q5c_A NTRC family transcripti 31.7 1.1E+02 0.0039 28.1 7.4 99 379-496 81-181 (196)
124 3hzh_A Chemotaxis response reg 31.4 1.9E+02 0.0065 24.4 8.7 102 395-496 37-155 (157)
125 3gd5_A Otcase, ornithine carba 31.2 1.3E+02 0.0044 30.3 8.1 100 333-444 125-234 (323)
126 3v5n_A Oxidoreductase; structu 30.8 1.6E+02 0.0054 30.4 9.3 73 393-467 63-142 (417)
127 3hdg_A Uncharacterized protein 30.7 1.8E+02 0.006 23.7 8.1 104 394-497 7-124 (137)
128 3dfz_A SIRC, precorrin-2 dehyd 30.7 86 0.0029 29.7 6.5 121 364-496 32-161 (223)
129 2qr3_A Two-component system re 30.3 2.2E+02 0.0075 23.1 8.8 104 395-498 4-126 (140)
130 3ohs_X Trans-1,2-dihydrobenzen 30.3 1.8E+02 0.0062 28.7 9.3 68 394-466 28-97 (334)
131 1zh8_A Oxidoreductase; TM0312, 30.3 1.3E+02 0.0044 30.0 8.3 93 363-466 18-113 (340)
132 2gkg_A Response regulator homo 30.1 2E+02 0.0069 22.6 9.0 102 395-497 6-124 (127)
133 3heb_A Response regulator rece 30.1 2.4E+02 0.0082 23.5 9.2 103 394-496 4-133 (152)
134 3kip_A 3-dehydroquinase, type 30.1 57 0.0019 29.4 4.6 59 438-496 87-156 (167)
135 3kke_A LACI family transcripti 29.9 3.7E+02 0.013 25.5 12.9 40 454-498 90-129 (303)
136 3dty_A Oxidoreductase, GFO/IDH 29.8 1.5E+02 0.0052 30.2 8.9 71 393-465 38-115 (398)
137 3cea_A MYO-inositol 2-dehydrog 29.7 2.2E+02 0.0077 28.0 10.0 91 364-465 9-101 (346)
138 2zkq_b 40S ribosomal protein S 29.5 42 0.0014 33.3 4.1 100 374-474 51-157 (295)
139 3eod_A Protein HNR; response r 29.4 1.8E+02 0.0062 23.4 7.9 105 393-497 6-125 (130)
140 2j48_A Two-component sensor ki 29.3 1.2E+02 0.004 23.7 6.4 101 396-496 3-116 (119)
141 3q2i_A Dehydrogenase; rossmann 29.2 1.3E+02 0.0046 30.0 8.2 91 364-466 14-106 (354)
142 4dad_A Putative pilus assembly 28.7 2E+02 0.007 23.6 8.3 106 394-499 20-142 (146)
143 3csu_A Protein (aspartate carb 28.7 71 0.0024 31.9 5.7 104 333-444 121-230 (310)
144 3u5c_A 40S ribosomal protein S 28.3 56 0.0019 31.6 4.6 101 373-474 49-156 (252)
145 1qkk_A DCTD, C4-dicarboxylate 28.2 2E+02 0.007 24.0 8.2 101 394-497 3-120 (155)
146 1gqo_A Dehydroquinase; dehydra 27.9 88 0.003 27.5 5.4 90 407-496 32-139 (143)
147 1duv_G Octase-1, ornithine tra 27.4 1.2E+02 0.0041 30.6 7.2 102 333-444 121-233 (333)
148 4fyk_A Deoxyribonucleoside 5'- 27.1 1.1E+02 0.0038 27.1 6.1 65 431-497 64-141 (152)
149 2uyg_A 3-dehydroquinate dehydr 27.1 1.2E+02 0.0042 26.7 6.2 90 407-496 31-139 (149)
150 3nhm_A Response regulator; pro 27.0 2.4E+02 0.0083 22.6 9.4 103 395-498 5-122 (133)
151 3fw2_A Thiol-disulfide oxidore 26.9 2.8E+02 0.0094 23.2 10.6 107 363-497 34-148 (150)
152 2glx_A 1,5-anhydro-D-fructose 26.6 2.1E+02 0.0072 28.0 9.1 68 393-465 23-92 (332)
153 1qgu_B Protein (nitrogenase mo 26.5 4.8E+02 0.017 27.7 12.4 113 374-498 191-334 (519)
154 1oth_A Protein (ornithine tran 26.5 1.3E+02 0.0045 30.2 7.3 116 315-442 101-230 (321)
155 4a8t_A Putrescine carbamoyltra 26.1 1.1E+02 0.0038 30.9 6.7 115 315-441 118-248 (339)
156 1uqr_A 3-dehydroquinate dehydr 25.9 85 0.0029 27.9 5.0 90 407-496 33-140 (154)
157 3iz6_A 40S ribosomal protein S 25.9 69 0.0024 31.8 4.9 100 374-474 55-161 (305)
158 3evn_A Oxidoreductase, GFO/IDH 25.7 1.2E+02 0.004 30.1 6.9 90 365-466 7-98 (329)
159 3lua_A Response regulator rece 25.3 1.8E+02 0.0061 23.8 7.2 105 394-498 4-127 (140)
160 2qxy_A Response regulator; reg 25.3 2.2E+02 0.0076 23.2 7.8 105 395-499 5-122 (142)
161 1tlt_A Putative oxidoreductase 25.2 1.5E+02 0.0051 29.1 7.6 68 393-466 29-96 (319)
162 3ip3_A Oxidoreductase, putativ 25.2 1.3E+02 0.0045 29.8 7.2 72 392-466 22-98 (337)
163 3m2t_A Probable dehydrogenase; 25.1 1.1E+02 0.0038 30.8 6.7 91 365-466 7-99 (359)
164 2qip_A Protein of unknown func 24.9 1E+02 0.0036 27.3 5.7 65 375-442 91-159 (165)
165 3pdi_A Nitrogenase MOFE cofact 24.8 5.3E+02 0.018 27.1 12.2 88 395-496 204-299 (483)
166 3i42_A Response regulator rece 24.7 2.6E+02 0.009 22.2 8.5 104 394-497 3-121 (127)
167 1k66_A Phytochrome response re 24.7 2.8E+02 0.0097 22.5 8.6 104 394-497 6-137 (149)
168 1h6d_A Precursor form of gluco 24.7 1.3E+02 0.0043 31.4 7.2 93 364-466 84-181 (433)
169 1mb3_A Cell division response 24.5 2.6E+02 0.0088 22.0 9.8 103 396-498 3-121 (124)
170 2rjn_A Response regulator rece 24.3 3.1E+02 0.01 22.8 9.4 104 393-496 6-124 (154)
171 3gl9_A Response regulator; bet 24.2 2.7E+02 0.0093 22.1 9.3 101 396-496 4-120 (122)
172 3g85_A Transcriptional regulat 23.9 3.7E+02 0.013 25.1 10.1 57 436-498 69-125 (289)
173 2qsj_A DNA-binding response re 23.6 2.6E+02 0.0089 23.2 8.0 106 394-499 3-125 (154)
174 3uug_A Multiple sugar-binding 23.6 3.6E+02 0.012 25.8 10.1 61 435-497 59-121 (330)
175 4a8p_A Putrescine carbamoyltra 23.6 1.2E+02 0.0042 30.8 6.5 115 315-441 96-226 (355)
176 4e7p_A Response regulator; DNA 23.5 3.1E+02 0.011 22.6 9.1 104 395-498 21-140 (150)
177 3tpf_A Otcase, ornithine carba 23.4 1.5E+02 0.0052 29.5 7.0 118 315-443 91-222 (307)
178 3ijp_A DHPR, dihydrodipicolina 23.4 91 0.0031 30.8 5.3 43 427-469 80-122 (288)
179 3oqb_A Oxidoreductase; structu 23.3 2.4E+02 0.0081 28.4 8.8 59 404-466 54-114 (383)
180 3k9c_A Transcriptional regulat 22.9 4.7E+02 0.016 24.5 14.2 45 451-498 80-124 (289)
181 2czc_A Glyceraldehyde-3-phosph 22.8 1.1E+02 0.0037 30.8 5.9 82 380-466 16-110 (334)
182 2o4c_A Erythronate-4-phosphate 22.7 2E+02 0.0068 29.5 8.0 86 384-469 106-210 (380)
183 3l6u_A ABC-type sugar transpor 22.6 4.7E+02 0.016 24.4 13.0 59 436-497 65-125 (293)
184 3hdv_A Response regulator; PSI 22.6 3E+02 0.01 22.1 9.7 105 394-498 7-127 (136)
185 3m9w_A D-xylose-binding peripl 22.5 4.5E+02 0.015 24.9 10.5 58 436-496 59-118 (313)
186 4gmf_A Yersiniabactin biosynth 22.4 1.6E+02 0.0053 30.1 7.1 91 363-466 7-101 (372)
187 2dc1_A L-aspartate dehydrogena 22.3 1.3E+02 0.0045 28.1 6.2 43 427-469 41-84 (236)
188 2ixa_A Alpha-N-acetylgalactosa 22.2 2.7E+02 0.0094 28.8 9.2 95 364-466 21-122 (444)
189 3f6c_A Positive transcription 22.1 3.1E+02 0.01 22.0 11.0 104 395-498 2-120 (134)
190 3l49_A ABC sugar (ribose) tran 22.0 3.3E+02 0.011 25.5 9.2 58 435-497 61-120 (291)
191 3e18_A Oxidoreductase; dehydro 21.7 2.2E+02 0.0076 28.5 8.2 67 393-466 28-96 (359)
192 3ilh_A Two component response 21.7 3.2E+02 0.011 22.1 9.7 105 394-498 9-139 (146)
193 1xea_A Oxidoreductase, GFO/IDH 21.7 2E+02 0.007 28.2 7.8 68 393-466 26-94 (323)
194 3aek_A Light-independent proto 21.4 3.7E+02 0.013 27.8 10.0 109 374-498 163-278 (437)
195 3l4e_A Uncharacterized peptida 21.3 1.4E+02 0.0048 27.7 6.0 90 376-469 12-123 (206)
196 2yq5_A D-isomer specific 2-hyd 21.2 4.6E+02 0.016 26.3 10.3 99 396-495 3-114 (343)
197 2f62_A Nucleoside 2-deoxyribos 21.2 1.9E+02 0.0064 25.8 6.5 36 431-466 63-105 (161)
198 3cz5_A Two-component response 20.9 3.2E+02 0.011 22.6 8.0 103 394-498 5-125 (153)
199 3sho_A Transcriptional regulat 20.7 4.3E+02 0.015 23.1 9.9 74 396-469 41-125 (187)
200 4gqa_A NAD binding oxidoreduct 20.7 4.1E+02 0.014 26.9 10.2 96 364-467 27-128 (412)
201 1vlv_A Otcase, ornithine carba 20.6 2.4E+02 0.0082 28.2 7.9 119 315-444 113-245 (325)
202 3bbn_B Ribosomal protein S2; s 20.4 2.4E+02 0.0083 26.7 7.4 38 436-474 158-196 (231)
203 3h9u_A Adenosylhomocysteinase; 20.3 1.2E+02 0.0041 31.8 5.7 75 394-468 211-300 (436)
204 3gvp_A Adenosylhomocysteinase 20.2 2.5E+02 0.0085 29.4 8.1 76 394-469 220-310 (435)
205 3oet_A Erythronate-4-phosphate 20.1 2.7E+02 0.0092 28.6 8.3 87 383-469 108-213 (381)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.4e-36 Score=321.18 Aligned_cols=346 Identities=17% Similarity=0.169 Sum_probs=251.0
Q ss_pred CCceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhC
Q 007215 139 KKRNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVG 216 (612)
Q Consensus 139 ~~~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~ 216 (612)
++|||++++..|+|..|| +.+.+..++ +| + ||+|+|+ +. ........+ .
T Consensus 3 ~~mkIl~v~~~~~p~~gG-~~~~~~~l~~~L--~--------------g~~v~v~~~~---~~~~~~~~~---------~ 53 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGG-IQSYLRDFIATQ--D--------------PESIVVFAST---QNAEEAHAY---------D 53 (394)
T ss_dssp -CCCEEEEESCCTTSCSH-HHHHHHHHHTTS--C--------------GGGEEEEEEC---SSHHHHHHH---------H
T ss_pred CCceEEEEeCccCCccch-HHHHHHHHHHHh--c--------------CCeEEEEECC---CCccchhhh---------c
Confidence 478999999999998666 677776666 66 5 7788773 32 111111122 0
Q ss_pred CCCCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-C-EEEEEeCCcHhHHHHh
Q 007215 217 FKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-H-VVGVVHTNYLEYIKRE 294 (612)
Q Consensus 217 ~~~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-p-vv~~~H~~~~~~~~~~ 294 (612)
....+.+...+.. ...........+.+.+.+.+||+||++.+....+.. .+.++.+ | +|.++|+....+.
T Consensus 54 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~---~~~~~~~~~~~i~~~h~~~~~~~--- 125 (394)
T 3okp_A 54 KTLDYEVIRWPRS--VMLPTPTTAHAMAEIIREREIDNVWFGAAAPLALMA---GTAKQAGASKVIASTHGHEVGWS--- 125 (394)
T ss_dssp TTCSSEEEEESSS--SCCSCHHHHHHHHHHHHHTTCSEEEESSCTTGGGGH---HHHHHTTCSEEEEECCSTHHHHT---
T ss_pred cccceEEEEcccc--ccccchhhHHHHHHHHHhcCCCEEEECCcchHHHHH---HHHHhcCCCcEEEEeccchhhhh---
Confidence 1112222111110 001122234567777778899999998876655554 3345555 5 8888998754222
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----c-CCCcEEEe-CCCCCCCCCCC---ccchhhhhhccCCCCc
Q 007215 295 KNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD-----L-PKSVICNV-HGVNPKFLQIG---EKVATDREQGQQAFSK 364 (612)
Q Consensus 295 ~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~-~~~~i~vi-nGVd~~~f~~~---~~~~~~~~~~~~~~~~ 364 (612)
. ....+.+.+.+.+ .+|.++++|+..++ + ..+++.++ ||+|.+.+.+. .....+.+++++++++
T Consensus 126 -~----~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (394)
T 3okp_A 126 -M----LPGSRQSLRKIGT-EVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTP 199 (394)
T ss_dssp -T----SHHHHHHHHHHHH-HCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCC
T ss_pred -h----cchhhHHHHHHHH-hCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCce
Confidence 1 1122333344344 68999999997765 2 34677777 89999888762 2345667778877779
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEec
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINP 442 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~P 442 (612)
+++|+|++.+.||++.+++|++++.++.++++|+|+|.|+..+.+++++..+...|.|+|.+++.+ ++++.||++|+|
T Consensus 200 ~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~p 279 (394)
T 3okp_A 200 VIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMP 279 (394)
T ss_dssp EEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEEC
T ss_pred EEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEec
Confidence 999999999999999999999999988899999999999999999988844444599999997666 999999999999
Q ss_pred cCC-------CcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HH
Q 007215 443 SIS-------DVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PE 506 (612)
Q Consensus 443 S~~-------E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~ 506 (612)
|.. |+||++++||||||+|||+++.|+..+++...+|+++ +|+++++++|.++++ +++.+. +.
T Consensus 280 s~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~g~~~~~~d~~~l~~~i~~l~~-~~~~~~~~~~~~~~~ 358 (394)
T 3okp_A 280 ARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPATGLVVEGSDVDKLSELLIELLD-DPIRRAAMGAAGRAH 358 (394)
T ss_dssp CCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTTTEEECCTTCHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CccccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcCCceEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999986665553399988 599999999999995 443322 22
Q ss_pred HHhcCCHHHHHHHHHHHHhccccc
Q 007215 507 QRYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 507 ~~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
..+.|+|+.++++|.+.|+ ++.
T Consensus 359 ~~~~~s~~~~~~~~~~~~~--~~~ 380 (394)
T 3okp_A 359 VEAEWSWEIMGERLTNILQ--SEP 380 (394)
T ss_dssp HHHHTBHHHHHHHHHHHHH--SCC
T ss_pred HHHhCCHHHHHHHHHHHHH--Hhc
Confidence 3456999999999999999 554
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=5.3e-37 Score=330.75 Aligned_cols=276 Identities=13% Similarity=0.121 Sum_probs=211.6
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHH--hccchhH---HHHHHHHHHHHHHhcCCeEEEe
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR--EKNGALQ---AFFVKHINNWVTRAYCDKVLRL 322 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~--~~~~~~~---~~~~~~i~~~~~~~~ad~vI~~ 322 (612)
+.+||+||++.+... ... ...++..+ |+|.++|+.+...... .....+. ......+++...+ .||.++++
T Consensus 120 ~~~~Dii~~~~~~~~-~~~--~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~ 195 (439)
T 3fro_A 120 EPLPDVVHFHDWHTV-FAG--ALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTGGY-IADIVTTV 195 (439)
T ss_dssp SCCCSEEEEESGGGH-HHH--HHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHHHH-HCSEEEES
T ss_pred CCCCeEEEecchhhh-hhH--HHHhhccCCCEEEEecccccccCchHHhCccccccccccceeeHhhhhhh-hccEEEec
Confidence 569999999876532 222 23334456 9999999986421100 0000000 0000133444344 68999999
Q ss_pred Chhhhc-------cCCCcEEEe-CCCCCCCCCCC--------ccchhhhhhccCCCCcEEEEEeccC-CccCHHHHHHHH
Q 007215 323 SAATQD-------LPKSVICNV-HGVNPKFLQIG--------EKVATDREQGQQAFSKGAYFLGKMV-WAKGYRELIDLL 385 (612)
Q Consensus 323 S~~~~~-------~~~~~i~vi-nGVd~~~f~~~--------~~~~~~~~~~~~~~~~~il~vGrl~-~~Kg~~~Li~A~ 385 (612)
|+..++ .+..++.++ ||+|++.|.+. .+...+++++++++ ++++|+||+. +.||++.+++|+
T Consensus 196 S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~ 274 (439)
T 3fro_A 196 SRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAI 274 (439)
T ss_dssp CHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHH
T ss_pred CHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHH
Confidence 997655 356788888 89999988765 33445667777776 9999999999 999999999999
Q ss_pred HHhhccC--CCeEEEEEecCCCH--HHHHHHHHHcCCc-eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHc
Q 007215 386 AKHKNDL--DGFKLDVFGNGEDA--YEVQSAAKRLDLN-LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAM 458 (612)
Q Consensus 386 ~~l~~~~--~~~~LvIvG~g~~~--~~l~~~~~~l~l~-v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~ 458 (612)
+++.++. ++++|+|+|.|+.. +.+++++++++ + +.|.|.+++.+ ++++.||++|+||.+|+||++++|||||
T Consensus 275 ~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~ 353 (439)
T 3fro_A 275 EILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCL 353 (439)
T ss_dssp HHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHT
T ss_pred HHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHC
Confidence 9998877 89999999999987 88999999999 6 66777677766 9999999999999999999999999999
Q ss_pred CCcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCCHHHH------hcCCHHHHHHHHHHHHhccccc
Q 007215 459 GKFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLTPEQR------YNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 459 G~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~~~~~------~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
|+|||+|+.|+..+++.+.+|+++ +|+++++++|.++++.+++.+..+.+ +.|+|+.++++|.+.|+ +++
T Consensus 354 G~Pvi~s~~~~~~e~~~~~~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~ 431 (439)
T 3fro_A 354 GAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYT--GSI 431 (439)
T ss_dssp TCEEEEESSTHHHHHCCTTTCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHH--TCS
T ss_pred CCCeEEcCCCCcceeEEcCceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH--HHH
Confidence 999999999997766654488888 79999999999999735555542222 56999999999999999 766
Q ss_pred cC
Q 007215 531 NN 532 (612)
Q Consensus 531 ~~ 532 (612)
+.
T Consensus 432 ~~ 433 (439)
T 3fro_A 432 DR 433 (439)
T ss_dssp CC
T ss_pred Hh
Confidence 43
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=2.2e-35 Score=319.37 Aligned_cols=363 Identities=15% Similarity=0.158 Sum_probs=241.6
Q ss_pred CCCCCceEEEEeCCCCCC------cCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHH
Q 007215 136 LSDKKRNVAIVTTASLPW------MTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYM 207 (612)
Q Consensus 136 ~~~~~~kI~ivt~~~~P~------~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~ 207 (612)
...+.|||++++..|+|. ..||+.+.+..++ +|++. ||+|+|+ +.. ..... ..
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~--------------G~~V~v~~~~~---~~~~~-~~- 76 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ--------------GIEVDIYTRAT---RPSQG-EI- 76 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT--------------TCEEEEEEECC---CGGGC-SE-
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhc--------------CCEEEEEecCC---CCCCc-cc-
Confidence 345578999999999884 2355788877777 89998 7777773 221 10000 00
Q ss_pred HHHHHhhhCCCCCceecccCC-Ccc--cccccccCh----HhHhhh-ccCC-CccEEEECCCchhHHhhhhHHHhhhCC-
Q 007215 208 RNWLEERVGFKADFKISFYPG-KFS--KERRSIIPA----GDTSQF-IPSK-DADIAILEEPEHLNWYHHGKRWTDKFN- 277 (612)
Q Consensus 208 ~~w~~~~v~~~~~~~i~~~~~-~y~--~~~~si~~~----~~l~~~-l~~~-~pDVVh~~~p~~l~~~~~~~~~~~~~~- 277 (612)
.....++++...+. .+. ......... ..+.+. +.+. +||+||++.+.. .+.. ..+.+..+
T Consensus 77 -------~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~-~~~~--~~~~~~~~~ 146 (438)
T 3c48_A 77 -------VRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLS-GQVG--WLLRDLWRI 146 (438)
T ss_dssp -------EEEETTEEEEEECCSCSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHH-HHHH--HHHHHHHTC
T ss_pred -------ccccCCeEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccH-HHHH--HHHHHHcCC
Confidence 00001111111110 000 000000011 112222 3323 499999976432 2222 23444456
Q ss_pred CEEEEEeCCcHhHHHHhcc-chhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCC
Q 007215 278 HVVGVVHTNYLEYIKREKN-GALQAFFVKHINNWVTRAYCDKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIG 348 (612)
Q Consensus 278 pvv~~~H~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~ 348 (612)
|+|.++|+........... ..........+++...+ .+|.++++|+..++ ++.+++.++ ||+|.+.|.+.
T Consensus 147 p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~ 225 (438)
T 3c48_A 147 PLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVD-NADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPG 225 (438)
T ss_dssp CEEEECSSCHHHHSCC----CCHHHHHHHHHHHHHHH-HCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC
T ss_pred CEEEEecCCcccccccccccCCcchHHHHHHHHHHHh-cCCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCc
Confidence 9999999875432100000 00111222344454444 68999999997655 234678788 89998888765
Q ss_pred ccch---hhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCC--CeEEEEEec----CCCHHHHHHHHHHcCCc
Q 007215 349 EKVA---TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLD--GFKLDVFGN----GEDAYEVQSAAKRLDLN 419 (612)
Q Consensus 349 ~~~~---~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~--~~~LvIvG~----g~~~~~l~~~~~~l~l~ 419 (612)
.... .+.++++++++++++|+|++.+.||++.+++|++.+.++.| +++|+|+|. |+..+.++++++++++.
T Consensus 226 ~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~ 305 (438)
T 3c48_A 226 NDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVE 305 (438)
T ss_dssp ----CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCT
T ss_pred ccchhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCC
Confidence 4333 66777777778899999999999999999999999988776 899999998 77788899999999875
Q ss_pred --eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEec--CCHHHHHHHH
Q 007215 420 --LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRSFPNCLTY--KTSEDFVARV 492 (612)
Q Consensus 420 --v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~--~d~~~la~aI 492 (612)
|.|+|.+++.+ ++++.||++|+||..|+||++++||||||+|||+++.|+..+ +.++.+|+++ +|+++++++|
T Consensus 306 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i 385 (438)
T 3c48_A 306 KRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADAL 385 (438)
T ss_dssp TTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHH
T ss_pred CcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHH
Confidence 99999997665 999999999999999999999999999999999999998554 4457789988 6999999999
Q ss_pred HHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHhccccccC
Q 007215 493 KEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSELNRILNN 532 (612)
Q Consensus 493 ~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~~~~~~~~ 532 (612)
.+++++ ++.+. +...+ |+|+.+++++.+.|+ ++++.
T Consensus 386 ~~l~~~-~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~--~~~~~ 428 (438)
T 3c48_A 386 ATLLDD-DETRIRMGEDAVEHART-FSWAATAAQLSSLYN--DAIAN 428 (438)
T ss_dssp HHHHHC-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHT
T ss_pred HHHHcC-HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH--HHhhh
Confidence 999964 33222 22334 999999999999999 77654
No 4
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.4e-34 Score=309.14 Aligned_cols=277 Identities=12% Similarity=0.079 Sum_probs=211.7
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhh--CC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCC
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDK--FN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 317 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~--~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad 317 (612)
..+.+.+.+.+||+||++.+....+.. ...... .+ |+|.++|+...... .... ....+.+...+ .+|
T Consensus 89 ~~l~~~l~~~~~Dvv~~~~~~~~~~~~--~~~~~~~~~~~p~v~~~h~~~~~~~---~~~~----~~~~~~~~~~~-~ad 158 (394)
T 2jjm_A 89 SKMAEVAQRENLDILHVHYAIPHAICA--YLAKQMIGERIKIVTTLHGTDITVL---GSDP----SLNNLIRFGIE-QSD 158 (394)
T ss_dssp HHHHHHHHHHTCSEEEECSSTTHHHHH--HHHHHHTTTCSEEEEECCHHHHHTT---TTCT----TTHHHHHHHHH-HSS
T ss_pred HHHHHHHHHcCCCEEEEcchhHHHHHH--HHHHHhhcCCCCEEEEEecCccccc---CCCH----HHHHHHHHHHh-hCC
Confidence 445666677899999998765333222 112222 24 88988887543211 1111 11223333333 589
Q ss_pred eEEEeChhhhc-----cC-CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhc
Q 007215 318 KVLRLSAATQD-----LP-KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN 390 (612)
Q Consensus 318 ~vI~~S~~~~~-----~~-~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~ 390 (612)
.++++|+.+++ +. .+++.++ ||+|++.+.+......+.++++++++++++|+|++.+.||++.+++|++.+.+
T Consensus 159 ~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~ 238 (394)
T 2jjm_A 159 VVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVT 238 (394)
T ss_dssp EEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHh
Confidence 99999997765 22 3577777 89999888776656667777776777899999999999999999999999987
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 391 DLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 391 ~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
+ ++++|+|+|+|++.+.++++++++++. |.|+|...+..++++.||++|+||..|+||++++||||||+|||+|+.|
T Consensus 239 ~-~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~ 317 (394)
T 2jjm_A 239 E-VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVG 317 (394)
T ss_dssp S-SCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCT
T ss_pred h-CCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCC
Confidence 6 579999999999999999999999874 9999987777799999999999999999999999999999999999999
Q ss_pred Cccccc-cCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHhcccccc
Q 007215 469 SNEFFR-SFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSELNRILN 531 (612)
Q Consensus 469 g~~~i~-~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~~~~~~~ 531 (612)
+..+++ ++.+|+++ +|+++++++|.+++++ ++.+. +...+.|+|+.++++|.+.|+ ++++
T Consensus 318 ~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~ 387 (394)
T 2jjm_A 318 GIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD-EELHRNMGERARESVYEQFRSEKIVSQYETIYY--DVLR 387 (394)
T ss_dssp TSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HTC-
T ss_pred ChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHh
Confidence 865544 56899988 6999999999999964 33222 223377999999999999999 6654
No 5
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=7.9e-35 Score=321.36 Aligned_cols=368 Identities=11% Similarity=0.052 Sum_probs=248.3
Q ss_pred CCceEEEEeCCCCCC----------cCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHH
Q 007215 139 KKRNVAIVTTASLPW----------MTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENY 206 (612)
Q Consensus 139 ~~~kI~ivt~~~~P~----------~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~ 206 (612)
++|||++++..|+|. ..||+.+.+..++ +|+++ ||+|+|+ +.. .......|
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~--------------G~~V~v~~~~~---~~~~~~~~ 68 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEM--------------GVQVDIITRRI---KDENWPEF 68 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHT--------------TCEEEEEEECC---CBTTBGGG
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhc--------------CCeEEEEeCCC---Ccccccch
Confidence 468999999998884 2455888888877 89999 8888873 221 10000000
Q ss_pred HHHHHHhhhCCCCCcee---cccCCCccccccccc----ChHhHhhhccC--CCccEEEECCCchhHHhhhhHHHhhhCC
Q 007215 207 MRNWLEERVGFKADFKI---SFYPGKFSKERRSII----PAGDTSQFIPS--KDADIAILEEPEHLNWYHHGKRWTDKFN 277 (612)
Q Consensus 207 ~~~w~~~~v~~~~~~~i---~~~~~~y~~~~~si~----~~~~l~~~l~~--~~pDVVh~~~p~~l~~~~~~~~~~~~~~ 277 (612)
..++ +......++++ +..+..+........ ....+.+.+.+ .+|||||++.+. ..+.. ..+++..+
T Consensus 69 -~~~~-~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~-~~~~~--~~~~~~~~ 143 (499)
T 2r60_A 69 -SGEI-DYYQETNKVRIVRIPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGD-GGLAG--VLLKNIKG 143 (499)
T ss_dssp -CCSE-EECTTCSSEEEEEECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHH-HHHHH--HHHHHHHC
T ss_pred -hhhH-HhccCCCCeEEEEecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCc-chHHH--HHHHHhcC
Confidence 0000 00000122222 221111110000000 11235555555 589999998643 22222 33445556
Q ss_pred -CEEEEEeCCcHhHHHHhccc-----hhHHH----HHHHHHHHHHHhcCCeEEEeChhhhc----c----------CCCc
Q 007215 278 -HVVGVVHTNYLEYIKREKNG-----ALQAF----FVKHINNWVTRAYCDKVLRLSAATQD----L----------PKSV 333 (612)
Q Consensus 278 -pvv~~~H~~~~~~~~~~~~~-----~~~~~----~~~~i~~~~~~~~ad~vI~~S~~~~~----~----------~~~~ 333 (612)
|+|.++|+............ .+... ....+++...+ .||.+|++|+..++ . +.++
T Consensus 144 ~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~k 222 (499)
T 2r60_A 144 LPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMS-YADKIIVSTSQERFGQYSHDLYRGAVNVEDDDK 222 (499)
T ss_dssp CCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHH-HCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGG
T ss_pred CcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHh-cCCEEEECCHHHHHHHHhhhcccccccccCCCC
Confidence 99999999865433211100 01110 12233444444 69999999997655 1 2356
Q ss_pred EEEe-CCCCCCCCCCCcc----chhhhhhc-----cCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC-eEEEEEec
Q 007215 334 ICNV-HGVNPKFLQIGEK----VATDREQG-----QQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG-FKLDVFGN 402 (612)
Q Consensus 334 i~vi-nGVd~~~f~~~~~----~~~~~~~~-----~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~-~~LvIvG~ 402 (612)
+.++ ||+|++.|.+... ...+.+++ +++++++++|+||+.+.||++.+++|++.+.++.++ .+++|+|+
T Consensus 223 i~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~ 302 (499)
T 2r60_A 223 FSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRG 302 (499)
T ss_dssp EEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESS
T ss_pred eEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 7777 8999988876543 44566666 666778999999999999999999999999766444 58999998
Q ss_pred --CC------C-------HHHHHHHHHHcCCc--eEEecCCCCHH--HHHhcc----ceEEeccCCCcchHHHHHHHHcC
Q 007215 403 --GE------D-------AYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGY----KVFINPSISDVLCTATAEALAMG 459 (612)
Q Consensus 403 --g~------~-------~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~a----Dv~V~PS~~E~fgl~llEAMA~G 459 (612)
|+ . .++++++++++++. |.|+|.+++.+ ++++.| |++|+||.+|+||++++||||||
T Consensus 303 ~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G 382 (499)
T 2r60_A 303 IENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASG 382 (499)
T ss_dssp CSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTT
T ss_pred CCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcC
Confidence 33 1 67899999999885 99999997665 999999 99999999999999999999999
Q ss_pred CcEEeeCCCCcccc-ccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHhcccc
Q 007215 460 KFVICADHPSNEFF-RSFPNCLTY--KTSEDFVARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSELNRI 529 (612)
Q Consensus 460 ~PVVas~~gg~~~i-~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~~~~~ 529 (612)
+|||+|+.|+..++ .++.+|+++ +|+++++++|.++++ +++.+. ....+.|+|+.++++|.+.|+ ++
T Consensus 383 ~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~--~~ 459 (499)
T 2r60_A 383 LPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE-SEETWSAYQEKGKQRVEERYTWQETARGYLEVIQ--EI 459 (499)
T ss_dssp CCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHH--HH
T ss_pred CCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HH
Confidence 99999999986554 456788888 799999999999995 443332 223345999999999999999 77
Q ss_pred ccC
Q 007215 530 LNN 532 (612)
Q Consensus 530 ~~~ 532 (612)
+..
T Consensus 460 ~~~ 462 (499)
T 2r60_A 460 ADR 462 (499)
T ss_dssp HHC
T ss_pred Hhh
Confidence 654
No 6
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=3.1e-34 Score=308.73 Aligned_cols=343 Identities=14% Similarity=0.126 Sum_probs=237.6
Q ss_pred CCceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhC
Q 007215 139 KKRNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVG 216 (612)
Q Consensus 139 ~~~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~ 216 (612)
++|||++++..+ . +||+.+.+..++ +|++. ||+|+|+ .. ..+ ..... ...+.....
T Consensus 39 ~~mkIl~v~~~~--~-~GG~~~~~~~l~~~L~~~--------------G~~v~v~~~~---~~~-~~~~~-~~~~~~~~~ 96 (416)
T 2x6q_A 39 KGRSFVHVNSTS--F-GGGVAEILHSLVPLLRSI--------------GIEARWFVIE---GPT-EFFNV-TKTFHNALQ 96 (416)
T ss_dssp TTCEEEEEESCS--S-SSTHHHHHHHHHHHHHHT--------------TCEEEEEECC---CCH-HHHHH-HHHHHHHHT
T ss_pred hccEEEEEeCCC--C-CCCHHHHHHHHHHHHHhC--------------CCeEEEEEcc---CCc-chhhh-hcccceeec
Confidence 468999999874 3 455888887777 89999 9999873 22 111 11111 011111111
Q ss_pred CCCCceecccCCCccccccccc-ChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCCCEEEEEeCCcHhHHHHhc
Q 007215 217 FKADFKISFYPGKFSKERRSII-PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREK 295 (612)
Q Consensus 217 ~~~~~~i~~~~~~y~~~~~si~-~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~~~ 295 (612)
....+.+.. ...+... ....+.+.+.+.+||+||++.+....+.. +..+..|++.++|+.+....
T Consensus 97 ~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~----~~~~~~p~v~~~h~~~~~~~---- 162 (416)
T 2x6q_A 97 GNESLKLTE------EMKELYLNVNRENSKFIDLSSFDYVLVHDPQPAALIE----FYEKKSPWLWRCHIDLSSPN---- 162 (416)
T ss_dssp TCCSCCCCH------HHHHHHHHHHHHHHHSSCGGGSSEEEEESSTTGGGGG----GSCCCSCEEEECCSCCSSCC----
T ss_pred ccccccccH------HHHHHHHHHHHHHHHHHhhcCCCEEEEeccchhhHHH----HHHhcCCEEEEEccccCCcc----
Confidence 111111110 0001111 11234555667799999998876543332 22222499999998754311
Q ss_pred cchhHHHHHHHHHHHHHHhcCCeEE-EeChhhhc-cCCCcEEEe-CCCCCCCCCCC-----ccchhhhhhccCCCCcEEE
Q 007215 296 NGALQAFFVKHINNWVTRAYCDKVL-RLSAATQD-LPKSVICNV-HGVNPKFLQIG-----EKVATDREQGQQAFSKGAY 367 (612)
Q Consensus 296 ~~~~~~~~~~~i~~~~~~~~ad~vI-~~S~~~~~-~~~~~i~vi-nGVd~~~f~~~-----~~~~~~~~~~~~~~~~~il 367 (612)
....+.+++++. .+|.++ ++|+..++ +++.++.++ ||+|+..+.+. .....+.++++++++++++
T Consensus 163 -----~~~~~~~~~~~~--~~~~~i~~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~ 235 (416)
T 2x6q_A 163 -----REFWEFLRRFVE--KYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIIT 235 (416)
T ss_dssp -----HHHHHHHHHHHT--TSSEEEESSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEE
T ss_pred -----HHHHHHHHHHHH--hCCEEEEechHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcEEE
Confidence 122233333322 356655 66776665 555777777 89997665432 2234556777777889999
Q ss_pred EEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC-----HHHHHHHHHHcCCc--eEEecCCC-----CHHHHHhc
Q 007215 368 FLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED-----AYEVQSAAKRLDLN--LNFQKGRD-----HADDSLHG 435 (612)
Q Consensus 368 ~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~-----~~~l~~~~~~l~l~--v~f~g~~~-----~~~~ll~~ 435 (612)
|+||+.+.||++.+++|++.+.++.|+++|+|+|+|+. .+.++++++++++. |.|+|.++ +..++++.
T Consensus 236 ~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ 315 (416)
T 2x6q_A 236 QVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA 315 (416)
T ss_dssp EECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred EEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh
Confidence 99999999999999999999998889999999999975 46678888888874 99999665 23399999
Q ss_pred cceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCcc-ccccCCcEEecCCHHHHHHHHHHHHhCCCCCCC-------HHH
Q 007215 436 YKVFINPSISDVLCTATAEALAMGKFVICADHPSNE-FFRSFPNCLTYKTSEDFVARVKEALANDPQPLT-------PEQ 507 (612)
Q Consensus 436 aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~-~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~-------~~~ 507 (612)
||++|+||..|+||++++||||||+|||+|+.|+.. .+.++.+|+++.|+++++++|.+++++ ++.++ +..
T Consensus 316 ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~ 394 (416)
T 2x6q_A 316 SDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKH-PEVSKEMGAKAKERV 394 (416)
T ss_dssp CSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred CCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEECCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999855 455678999999999999999999964 33222 223
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 007215 508 RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 508 ~~~~sWe~~~~~~~~~y~ 525 (612)
.+.|+|+.++++|.+.|+
T Consensus 395 ~~~fs~~~~~~~~~~~~~ 412 (416)
T 2x6q_A 395 RKNFIITKHMERYLDILN 412 (416)
T ss_dssp HHHTBHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHH
Confidence 457999999999999998
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=6e-34 Score=312.81 Aligned_cols=272 Identities=14% Similarity=0.097 Sum_probs=199.2
Q ss_pred CCccEEEECCCchhHHhhhhHHHh-hhCC-CEEEEEeCCcHhHH-H--HhccchhH-H---------HHHHHHHHHHHHh
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWT-DKFN-HVVGVVHTNYLEYI-K--REKNGALQ-A---------FFVKHINNWVTRA 314 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~-~~~~-pvv~~~H~~~~~~~-~--~~~~~~~~-~---------~~~~~i~~~~~~~ 314 (612)
.+|||||++.+... +.. .... +..+ |+|.++|+...... . ......+. . .....+++...+
T Consensus 128 ~~~Divh~~~~~~~-~~~--~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 203 (485)
T 2qzs_A 128 WRPDVVHAHDWHAG-LAP--AYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLY- 203 (485)
T ss_dssp CCCSEEEEETGGGT-THH--HHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHH-
T ss_pred CCCCEEEeeccchh-HHH--HHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHH-
Confidence 79999999875432 222 2233 4456 99999998642110 0 00000000 0 000122333333
Q ss_pred cCCeEEEeChhhhc-cCC-----------------CcEEEe-CCCCCCCCCCCc-------------------cchhhhh
Q 007215 315 YCDKVLRLSAATQD-LPK-----------------SVICNV-HGVNPKFLQIGE-------------------KVATDRE 356 (612)
Q Consensus 315 ~ad~vI~~S~~~~~-~~~-----------------~~i~vi-nGVd~~~f~~~~-------------------~~~~~~~ 356 (612)
.+|.++++|+.+++ +.+ .++.++ ||||.+.|.+.. +...+.+
T Consensus 204 ~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 283 (485)
T 2qzs_A 204 YADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIA 283 (485)
T ss_dssp HCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHH
T ss_pred hcCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHH
Confidence 58999999997655 221 667777 899998887653 2345566
Q ss_pred hccCC--CCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceE-EecCCCCHH-
Q 007215 357 QGQQA--FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLN-FQKGRDHAD- 430 (612)
Q Consensus 357 ~~~~~--~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~-f~g~~~~~~- 430 (612)
+++++ +.++++|+||+.+.||++.|++|++.+.+ ++++|+|+|.|+. .+.+++++++++.+|. |.|. .+.+
T Consensus 284 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~ 360 (485)
T 2qzs_A 284 MGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGY-HEAFS 360 (485)
T ss_dssp HTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESC-CHHHH
T ss_pred cCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCC-CHHHH
Confidence 77765 67899999999999999999999999976 3899999999873 5788899998885686 6666 4443
Q ss_pred -HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccc-cC---------CcEEec--CCHHHHHHHHHHHHh
Q 007215 431 -DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SF---------PNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 431 -~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~-~~---------~~g~l~--~d~~~la~aI~~ll~ 497 (612)
++++.||++|+||.+|+||++++||||||+|||+|+.||..+++ ++ .+|+++ +|+++++++|.++++
T Consensus 361 ~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 361 HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp HHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999865554 45 789988 699999999999994
Q ss_pred --CCCCCCCHH----HHhcCCHHHHHHHHHHHHhccccc
Q 007215 498 --NDPQPLTPE----QRYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 498 --~~~~~~~~~----~~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
++++.+.++ .++.|+|+.++++|.++|+ ++.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ly~--~~~ 477 (485)
T 2qzs_A 441 LWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYY--RLK 477 (485)
T ss_dssp HHTSHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHC
T ss_pred HcCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH--Hhh
Confidence 344433322 2367999999999999999 554
No 8
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=4.5e-33 Score=310.06 Aligned_cols=211 Identities=15% Similarity=0.166 Sum_probs=167.5
Q ss_pred cCCeEEEeChhhhc-c--------------CCCcEEEe-CCCCCCCCCCCcc--------------------chhhhhhc
Q 007215 315 YCDKVLRLSAATQD-L--------------PKSVICNV-HGVNPKFLQIGEK--------------------VATDREQG 358 (612)
Q Consensus 315 ~ad~vI~~S~~~~~-~--------------~~~~i~vi-nGVd~~~f~~~~~--------------------~~~~~~~~ 358 (612)
+||.|+++|+..++ + ...++.+| ||||.+.|.|... ...+.+++
T Consensus 241 ~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~g 320 (536)
T 3vue_A 241 EADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAG 320 (536)
T ss_dssp HCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTT
T ss_pred hccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcC
Confidence 58999999996433 1 13567777 9999998876421 11223445
Q ss_pred c--CCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH--HHHHHHHHHcCCceEEecCCCCHH--HH
Q 007215 359 Q--QAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLNLNFQKGRDHAD--DS 432 (612)
Q Consensus 359 ~--~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l~v~f~g~~~~~~--~l 432 (612)
+ .++.|+|+|+||+.++||++.|++|++++.++ +.+++++|.|+.. ..++.....++..+.|.+..++.+ .+
T Consensus 321 l~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 398 (536)
T 3vue_A 321 LPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398 (536)
T ss_dssp SCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHH
T ss_pred CCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHH
Confidence 4 45678999999999999999999999999775 6778888888764 556677778887799999888766 89
Q ss_pred HhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-cccccCCcEE----------ec--CCHHHHHHHHHHHHh--
Q 007215 433 LHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN-EFFRSFPNCL----------TY--KTSEDFVARVKEALA-- 497 (612)
Q Consensus 433 l~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-~~i~~~~~g~----------l~--~d~~~la~aI~~ll~-- 497 (612)
++.||+||+||.+|+||++++||||||+|||+|++||. +.|.++.+|+ ++ .|+++|+++|.+++.
T Consensus 399 ~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~ 478 (536)
T 3vue_A 399 MAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVV 478 (536)
T ss_dssp HHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999995 5566788998 33 678999999998875
Q ss_pred CCCCCCCHHH----HhcCCHHHHHHHHHHHHhccccc
Q 007215 498 NDPQPLTPEQ----RYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 498 ~~~~~~~~~~----~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
+++ .++++. ++.|||++++++|.++|+ ++.
T Consensus 479 ~~~-~~~~~~~~am~~~fSW~~~A~~y~~ly~--~L~ 512 (536)
T 3vue_A 479 GTP-AYEEMVRNCMNQDLSWKGPAKNWENVLL--GLG 512 (536)
T ss_dssp TSH-HHHHHHHHHHHSCCSSHHHHHHHHHHHH--TTC
T ss_pred CcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhh
Confidence 332 223222 356999999999999999 653
No 9
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=2.1e-33 Score=308.52 Aligned_cols=277 Identities=13% Similarity=0.119 Sum_probs=200.3
Q ss_pred cCCCccEEEECCCchhHHhhhhHHHhh--hCC-CEEEEEeCCcHhHH-HH--h-c--cc-hhH-----HHH-HHHHHHHH
Q 007215 248 PSKDADIAILEEPEHLNWYHHGKRWTD--KFN-HVVGVVHTNYLEYI-KR--E-K--NG-ALQ-----AFF-VKHINNWV 311 (612)
Q Consensus 248 ~~~~pDVVh~~~p~~l~~~~~~~~~~~--~~~-pvv~~~H~~~~~~~-~~--~-~--~~-~~~-----~~~-~~~i~~~~ 311 (612)
.+.+|||||++.+.. .+.. ..... ..+ |+|.++|+.+.... .. . . .. ... .+. ...+++..
T Consensus 127 ~~~~~DiIh~~~~~~-~~~~--~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (485)
T 1rzu_A 127 PGWRPDMVHAHDWQA-AMTP--VYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGG 203 (485)
T ss_dssp SSCCCSEEEEEHHHH-TTHH--HHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHH
T ss_pred cCCCCCEEEecccch-hHHH--HHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHH
Confidence 467999999986432 2222 12222 256 99999999643110 00 0 0 00 000 000 01233333
Q ss_pred HHhcCCeEEEeChhhhc-c---------------CCCcEEEe-CCCCCCCCCCCc-------------------cchhhh
Q 007215 312 TRAYCDKVLRLSAATQD-L---------------PKSVICNV-HGVNPKFLQIGE-------------------KVATDR 355 (612)
Q Consensus 312 ~~~~ad~vI~~S~~~~~-~---------------~~~~i~vi-nGVd~~~f~~~~-------------------~~~~~~ 355 (612)
.+ .||.++++|+..++ + +.+++.++ ||||.+.|.+.. +...+.
T Consensus 204 ~~-~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 282 (485)
T 1rzu_A 204 LQ-TATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAE 282 (485)
T ss_dssp HH-HCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHH
T ss_pred Hh-hcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHH
Confidence 33 58999999997655 2 23677788 899988877653 234566
Q ss_pred hhccCCC-CcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceE-EecCCCCHH-
Q 007215 356 EQGQQAF-SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLN-FQKGRDHAD- 430 (612)
Q Consensus 356 ~~~~~~~-~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~-f~g~~~~~~- 430 (612)
+++++++ +++++|+||+.++||++.|++|++++.+ ++++|+|+|+|+. .+.+++++++++.+|. |.|. ++.+
T Consensus 283 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~ 359 (485)
T 1rzu_A 283 HFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY-NEPLS 359 (485)
T ss_dssp HHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESC-CHHHH
T ss_pred hcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCC-CHHHH
Confidence 6777664 6799999999999999999999999976 3899999999974 5788899988875687 5666 4443
Q ss_pred -HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccc-cC---------CcEEec--CCHHHHHHHHHHHHh
Q 007215 431 -DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SF---------PNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 431 -~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~-~~---------~~g~l~--~d~~~la~aI~~ll~ 497 (612)
++++.||++|+||.+|+||++++||||||+|||+|+.||..+++ ++ .+|+++ +|+++++++|.++++
T Consensus 360 ~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 360 HLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp HHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999865554 45 789988 799999999999994
Q ss_pred --CCCCCCCHHH----HhcCCHHHHHHHHHHHHhccccccCC
Q 007215 498 --NDPQPLTPEQ----RYNLSWEAATQRFIEYSELNRILNNN 533 (612)
Q Consensus 498 --~~~~~~~~~~----~~~~sWe~~~~~~~~~y~~~~~~~~~ 533 (612)
++++.+.++. ++.|+|+.++++|.++|+ ++++..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~--~~~~~~ 479 (485)
T 1rzu_A 440 YYHDPKLWTQMQKLGMKSDVSWEKSAGLYAALYS--QLISKG 479 (485)
T ss_dssp HHTCHHHHHHHHHHHHTCCCBHHHHHHHHHHHHH--HHTC--
T ss_pred HhCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHH--HhhCCC
Confidence 3444333222 267999999999999999 766543
No 10
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=6.8e-34 Score=303.83 Aligned_cols=349 Identities=16% Similarity=0.214 Sum_probs=238.0
Q ss_pred CCCCceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhh
Q 007215 137 SDKKRNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEER 214 (612)
Q Consensus 137 ~~~~~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~ 214 (612)
..++|||++++..++|..|| +.+.+..++ +|++. ||+|+|+ +.. .......+ . .
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG-~~~~~~~l~~~L~~~--------------G~~V~v~~~~~---~~~~~~~~----~--~ 72 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGG-VQSHVLQLAEVLRDA--------------GHEVSVLAPAS---PHVKLPDY----V--V 72 (406)
T ss_dssp ----CEEEEECSSCTTSCCH-HHHHHHHHHHHHHHT--------------TCEEEEEESCC---TTSCCCTT----E--E
T ss_pred CCCcceEEEEeccCCCCCCc-HHHHHHHHHHHHHHC--------------CCeEEEEecCC---ccccCCcc----c--c
Confidence 44578999999877665555 677777777 89999 8888773 221 00000000 0 0
Q ss_pred hCCCCCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHH
Q 007215 215 VGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR 293 (612)
Q Consensus 215 v~~~~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~ 293 (612)
... ....++.... .............+.+.+.+.+||+||++.+....+. ....+..+ |++.++|+.+.....
T Consensus 73 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~---~~~~~~~~~~~i~~~h~~~~~~~~- 146 (406)
T 2gek_A 73 SGG-KAVPIPYNGS-VARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLS---MLALQAAEGPIVATFHTSTTKSLT- 146 (406)
T ss_dssp ECC-CCC-------------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHH---HHHHHHEESSEEEEECCCCCSHHH-
T ss_pred cCC-cEEeccccCC-cccccccHHHHHHHHHHHHhcCCCEEEECCccchHHH---HHHHHhcCCCEEEEEcCcchhhhh-
Confidence 000 1111111000 0000000001244666677789999999876654332 23344445 999999997644321
Q ss_pred hccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-----cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEE
Q 007215 294 EKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD-----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAY 367 (612)
Q Consensus 294 ~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il 367 (612)
..++.+.++ ...+ .+|.++++|+..++ ++.+++ ++ ||+|.+.+.+.... .....+++.++
T Consensus 147 ------~~~~~~~~~-~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~~~-----~~~~~~~~~i~ 212 (406)
T 2gek_A 147 ------LSVFQGILR-PYHE-KIIGRIAVSDLARRWQMEALGSDAV-EIPNGVDVASFADAPLL-----DGYPREGRTVL 212 (406)
T ss_dssp ------HHHHHSTTH-HHHT-TCSEEEESSHHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCCCC-----TTCSCSSCEEE
T ss_pred ------HHHHHHHHH-HHHh-hCCEEEECCHHHHHHHHHhcCCCcE-EecCCCChhhcCCCchh-----hhccCCCeEEE
Confidence 122222233 2222 58999999997655 455677 66 89997655443211 11222457999
Q ss_pred EEecc-CCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccC
Q 007215 368 FLGKM-VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSI 444 (612)
Q Consensus 368 ~vGrl-~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~ 444 (612)
|+|++ .+.||++.+++|+.++.++.++++|+|+|.++. +.++++++++...|.|+|.+++.+ ++++.||++|+||.
T Consensus 213 ~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~ 291 (406)
T 2gek_A 213 FLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHL 291 (406)
T ss_dssp EESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCC
T ss_pred EEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCC
Confidence 99999 999999999999999998889999999999988 888888887743499999999885 99999999999996
Q ss_pred -CCcchHHHHHHHHcCCcEEeeCCCCccccc-cCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHH
Q 007215 445 -SDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWE 514 (612)
Q Consensus 445 -~E~fgl~llEAMA~G~PVVas~~gg~~~i~-~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe 514 (612)
.|+||++++|||+||+|||+++.|+..+++ ++.+|+++ +|+++++++|.++++++ +.+. +.....|+|+
T Consensus 292 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~~~~s~~ 370 (406)
T 2gek_A 292 GGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDD-QLRAGYVARASERVHRYDWS 370 (406)
T ss_dssp SCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHGGGGBHH
T ss_pred CCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHhCCHH
Confidence 899999999999999999999999865554 47889988 89999999999999643 3222 1222379999
Q ss_pred HHHHHHHHHHhccccccCC
Q 007215 515 AATQRFIEYSELNRILNNN 533 (612)
Q Consensus 515 ~~~~~~~~~y~~~~~~~~~ 533 (612)
.+++++.+.|+ ++++..
T Consensus 371 ~~~~~~~~~~~--~~~~~~ 387 (406)
T 2gek_A 371 VVSAQIMRVYE--TVSGAG 387 (406)
T ss_dssp HHHHHHHHHHH--HHCCTT
T ss_pred HHHHHHHHHHH--HHHhhc
Confidence 99999999999 777654
No 11
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=3.3e-33 Score=292.73 Aligned_cols=303 Identities=13% Similarity=0.023 Sum_probs=230.5
Q ss_pred CceEEEEeCC-----------CCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHH
Q 007215 140 KRNVAIVTTA-----------SLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYM 207 (612)
Q Consensus 140 ~~kI~ivt~~-----------~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~ 207 (612)
+|||++++.. |+|...||+.+.+..++ +|++. ||+|+|+... ......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~--------------G~~v~v~~~~--~~~~~~---- 62 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLEL--------------GHEVFLLGAP--GSPAGR---- 62 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHT--------------TCEEEEESCT--TSCCCS----
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHc--------------CCeEEEEecC--CCCCCC----
Confidence 5899999998 56665566888888877 89999 9999884221 010000
Q ss_pred HHHHHhhhCCCCCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCC
Q 007215 208 RNWLEERVGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTN 286 (612)
Q Consensus 208 ~~w~~~~v~~~~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~ 286 (612)
..+++...+ ....+.+.+.+.+||+||++.+..... ..+..+ | |.++|+.
T Consensus 63 -----------~~~~~~~~~-----------~~~~l~~~l~~~~~Dvi~~~~~~~~~~------~~~~~~~p-v~~~h~~ 113 (342)
T 2iuy_A 63 -----------PGLTVVPAG-----------EPEEIERWLRTADVDVVHDHSGGVIGP------AGLPPGTA-FISSHHF 113 (342)
T ss_dssp -----------TTEEECSCC-----------SHHHHHHHHHHCCCSEEEECSSSSSCS------TTCCTTCE-EEEEECS
T ss_pred -----------CcceeccCC-----------cHHHHHHHHHhcCCCEEEECCchhhHH------HHhhcCCC-EEEecCC
Confidence 011111001 112566777778999999987653211 133445 8 9999998
Q ss_pred cHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc-cC-CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCC
Q 007215 287 YLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD-LP-KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFS 363 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~-~~-~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~ 363 (612)
+.... .+|.++++|+..++ +. ..++.++ ||+|++.+.+.... .+.+
T Consensus 114 ~~~~~-----------------------~~d~ii~~S~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~--------~~~~ 162 (342)
T 2iuy_A 114 TTRPV-----------------------NPVGCTYSSRAQRAHCGGGDDAPVIPIPVDPARYRSAADQ--------VAKE 162 (342)
T ss_dssp SSBCS-----------------------CCTTEEESCHHHHHHTTCCTTSCBCCCCBCGGGSCCSTTC--------CCCC
T ss_pred CCCcc-----------------------cceEEEEcCHHHHHHHhcCCceEEEcCCCChhhcCccccc--------CCCC
Confidence 64321 17999999998776 32 3567777 89998877654321 1234
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEe
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~ 441 (612)
+.++|+||+.+.||++.+++|++.+ +++|+|+|.|+..+.+++++++++..|+|+|.+++.+ ++++.||++|+
T Consensus 163 ~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ 237 (342)
T 2iuy_A 163 DFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLA 237 (342)
T ss_dssp SCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEE
T ss_pred CEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEE
Confidence 6899999999999999999999987 6899999999999999999998885699999999884 99999999999
Q ss_pred ccC----------CCcchHHHHHHHHcCCcEEeeCCCCcccc-cc--CCcEEecC-CHHHHHHHHHHHHhCCCCCCCHHH
Q 007215 442 PSI----------SDVLCTATAEALAMGKFVICADHPSNEFF-RS--FPNCLTYK-TSEDFVARVKEALANDPQPLTPEQ 507 (612)
Q Consensus 442 PS~----------~E~fgl~llEAMA~G~PVVas~~gg~~~i-~~--~~~g~l~~-d~~~la~aI~~ll~~~~~~~~~~~ 507 (612)
||. .|+||++++||||||+|||+|+.|+..++ .+ +.+|+++. |+++++++|.++++ ....++..
T Consensus 238 ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~--~~~~~~~~ 315 (342)
T 2iuy_A 238 MSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA--SDEVRRAA 315 (342)
T ss_dssp CCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC--HHHHHHHH
T ss_pred CCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH--HHHHHHHH
Confidence 999 79999999999999999999999986554 45 57888885 99999999999984 22222444
Q ss_pred HhcCCHHHHHHHHHHHHhcccccc
Q 007215 508 RYNLSWEAATQRFIEYSELNRILN 531 (612)
Q Consensus 508 ~~~~sWe~~~~~~~~~y~~~~~~~ 531 (612)
.+.|+|+.++++|.+.|+ ++++
T Consensus 316 ~~~~s~~~~~~~~~~~~~--~~~~ 337 (342)
T 2iuy_A 316 VRLWGHVTIAERYVEQYR--RLLA 337 (342)
T ss_dssp HHHHBHHHHHHHHHHHHH--HHHT
T ss_pred HHhcCHHHHHHHHHHHHH--HHHc
Confidence 578999999999999999 6654
No 12
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=9.7e-33 Score=291.57 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=229.3
Q ss_pred ceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhhhCCC
Q 007215 141 RNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVGFK 218 (612)
Q Consensus 141 ~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~v~~~ 218 (612)
|||++++..++| .|| +.+.+..++ +|+++ ||+|+|+ +...-..+
T Consensus 1 MkIl~i~~~~~~-~gG-~~~~~~~l~~~L~~~--------------G~~V~v~~~~~~~~~~------------------ 46 (374)
T 2iw1_A 1 MIVAFCLYKYFP-FGG-LQRDFMRIASTVAAR--------------GHHVRVYTQSWEGDCP------------------ 46 (374)
T ss_dssp -CEEEECSEECT-TCH-HHHHHHHHHHHHHHT--------------TCCEEEEESEECSCCC------------------
T ss_pred CeEEEEEeecCC-Ccc-hhhHHHHHHHHHHhC--------------CCeEEEEecCCCCCCC------------------
Confidence 689999999877 344 777777777 89999 7777773 22100000
Q ss_pred CCceecccCCCc-ccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhcc
Q 007215 219 ADFKISFYPGKF-SKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKN 296 (612)
Q Consensus 219 ~~~~i~~~~~~y-~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~ 296 (612)
.++++...+... ....+.......+.+.+.+.+||+||++.+....... ....... +.+...|.......
T Consensus 47 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~Dvv~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----- 118 (374)
T 2iw1_A 47 KAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVY---FAADVCYAEKVAQEKGFLYRLT----- 118 (374)
T ss_dssp TTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCCSEEEESSCCTTCSEE---ECCSCCHHHHHHHHCCHHHHTS-----
T ss_pred CCcEEEEEccCcccchhhHHHHHHHHHHHHhccCCCEEEEecCCCCceee---eccccccceeeeecccchhhhc-----
Confidence 011111111100 0000111112345566677899999997643211000 0011111 11111122111100
Q ss_pred chhHHHHHHHHHHHHHHh-cCCeEEEeChhhhc-------cCCCcEEEe-CCCCCCCCCCCcc----chhhhhhccCCCC
Q 007215 297 GALQAFFVKHINNWVTRA-YCDKVLRLSAATQD-------LPKSVICNV-HGVNPKFLQIGEK----VATDREQGQQAFS 363 (612)
Q Consensus 297 ~~~~~~~~~~i~~~~~~~-~ad~vI~~S~~~~~-------~~~~~i~vi-nGVd~~~f~~~~~----~~~~~~~~~~~~~ 363 (612)
........+++..... .+|.++++|+..++ .+.+++.++ ||+|.+.|.+... ...+.++++++++
T Consensus 119 --~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (374)
T 2iw1_A 119 --SRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQ 196 (374)
T ss_dssp --HHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTC
T ss_pred --HHHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCCCCCC
Confidence 0112223444443332 58999999997655 234678777 8999887765432 2456677777778
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhcc-CCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhccceEE
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKND-LDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFI 440 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~-~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~aDv~V 440 (612)
++++|+|++.+.||++.+++|++.+.++ .++++|+++|.|+. +.++++++++++. |.|+|..++..++++.||++|
T Consensus 197 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 275 (374)
T 2iw1_A 197 NLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLL 275 (374)
T ss_dssp EEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEE
T ss_pred eEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEE
Confidence 8999999999999999999999998776 47899999999875 6788889998874 999999888889999999999
Q ss_pred eccCCCcchHHHHHHHHcCCcEEeeCCCCcc-ccccCCcEEecC---CHHHHHHHHHHHHhCCCCCCC------HHHHhc
Q 007215 441 NPSISDVLCTATAEALAMGKFVICADHPSNE-FFRSFPNCLTYK---TSEDFVARVKEALANDPQPLT------PEQRYN 510 (612)
Q Consensus 441 ~PS~~E~fgl~llEAMA~G~PVVas~~gg~~-~i~~~~~g~l~~---d~~~la~aI~~ll~~~~~~~~------~~~~~~ 510 (612)
+||.+|+||++++||||||+|||+|+.|+.. .+.++.+|+++. |+++++++|.+++++ ++.++ +.....
T Consensus 276 ~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~ 354 (374)
T 2iw1_A 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQ-SPLRMAWAENARHYADT 354 (374)
T ss_dssp ECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred eccccCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998854 555678898873 999999999999964 43322 222345
Q ss_pred CCHHHHHHHHHHHHh
Q 007215 511 LSWEAATQRFIEYSE 525 (612)
Q Consensus 511 ~sWe~~~~~~~~~y~ 525 (612)
++|++.++++.+.++
T Consensus 355 ~~~~~~~~~~~~~l~ 369 (374)
T 2iw1_A 355 QDLYSLPEKAADIIT 369 (374)
T ss_dssp SCCSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 788888999988887
No 13
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=8.5e-32 Score=310.18 Aligned_cols=272 Identities=10% Similarity=0.106 Sum_probs=199.3
Q ss_pred CCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhcc--chhHHH--HH--HHHHHHHHHhcCCeEEEe
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKN--GALQAF--FV--KHINNWVTRAYCDKVLRL 322 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~--~~~~~~--~~--~~i~~~~~~~~ad~vI~~ 322 (612)
.+|||||+|.+. .++. +..++++.+ |+|.+.|+........... ..+... +. ...++...+ .||.||++
T Consensus 406 ~~PDVIHsH~~~-sglv--a~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~-~AD~VIa~ 481 (816)
T 3s28_A 406 GKPDLIIGNYSD-GNLV--ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMN-HTDFIITS 481 (816)
T ss_dssp SCCSEEEEEHHH-HHHH--HHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHH-HSSEEEES
T ss_pred CCCeEEEeCCch-HHHH--HHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHH-hCCEEEEC
Confidence 479999998533 2232 245666677 9999999875432110000 000000 00 112333443 69999999
Q ss_pred Chhhhc--------cC--------------------CCcEEEe-CCCCCCCCCCCccch-------------------hh
Q 007215 323 SAATQD--------LP--------------------KSVICNV-HGVNPKFLQIGEKVA-------------------TD 354 (612)
Q Consensus 323 S~~~~~--------~~--------------------~~~i~vi-nGVd~~~f~~~~~~~-------------------~~ 354 (612)
|+..++ +. ..++.+| ||||.+.|.|..... .+
T Consensus 482 S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r 561 (816)
T 3s28_A 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENK 561 (816)
T ss_dssp CHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBT
T ss_pred CHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHH
Confidence 986544 11 1278888 899999887653221 12
Q ss_pred hhhcc--CCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCC-----------CHHHHHHHHHHcCCc--
Q 007215 355 REQGQ--QAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGE-----------DAYEVQSAAKRLDLN-- 419 (612)
Q Consensus 355 ~~~~~--~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~-----------~~~~l~~~~~~l~l~-- 419 (612)
+.+++ ++++++|+|+||+.+.||++.+++|++++.+..++++|+|+|+|+ ..+.++++++++++.
T Consensus 562 ~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~ 641 (816)
T 3s28_A 562 EHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQ 641 (816)
T ss_dssp TEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBB
T ss_pred HHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCc
Confidence 33444 567889999999999999999999999998777889999999999 347788899999985
Q ss_pred eEEecCCCC----HH--HHHh-ccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEec--CCHHHHH
Q 007215 420 LNFQKGRDH----AD--DSLH-GYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRSFPNCLTY--KTSEDFV 489 (612)
Q Consensus 420 v~f~g~~~~----~~--~ll~-~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~--~d~~~la 489 (612)
|.|+|...+ .+ ++++ .+|+||+||.+|+||++++||||||+|||+|+.||..+ +.++.+|+++ +|+++++
T Consensus 642 V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 642 FRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHH
T ss_pred EEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHH
Confidence 999997775 22 5565 67999999999999999999999999999999999655 4567899988 6999999
Q ss_pred HHHHHHHh---CCCCCCC-------HHHHhcCCHHHHHHHHHHHHh
Q 007215 490 ARVKEALA---NDPQPLT-------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 490 ~aI~~ll~---~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
++|.+++. ++++.+. +...+.|+|+.++++|.++|+
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~ 767 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTG 767 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99977762 3343333 233467999999999999998
No 14
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.3e-32 Score=295.50 Aligned_cols=335 Identities=14% Similarity=0.064 Sum_probs=229.0
Q ss_pred ceEEEEeCCCCCCcCcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEcCCcccCCchh-HHHHHHHHHHhhhCCC
Q 007215 141 RNVAIVTTASLPWMTGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEE-QENYMRNWLEERVGFK 218 (612)
Q Consensus 141 ~kI~ivt~~~~P~~~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~-~~~~~~~w~~~~v~~~ 218 (612)
|||+++++.+ |..|| +.+....++ +|+++ ++|+++...-. |... +.. ... .... .. ...
T Consensus 1 MkI~~v~~~~-p~~gG-~~~~~~~l~~~L~~~--~~V~v~~~~~~-g~~~--~~~-----~~~~~~~~-~~----~~~-- 61 (413)
T 3oy2_A 1 MKLIIVGAHS-SVPSG-YGRVMRAIVPRISKA--HEVIVFGIHAF-GRSV--HAN-----IEEFDAQT-AE----HVR-- 61 (413)
T ss_dssp CEEEEEEECT-TCCSH-HHHHHHHHHHHHTTT--SEEEEEEESCC-SCCS--CSS-----SEEEEHHH-HH----HHT--
T ss_pred CeEEEecCCC-CCCCC-HHHHHHHHHHHHHhc--CCeEEEeecCC-Cccc--ccc-----cccCCccc-cc----ccc--
Confidence 7999999876 55555 777777777 88887 77777643221 1111 111 010 0000 00 000
Q ss_pred CCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhC--C-CEEEEEeCCcHhHHHHhc
Q 007215 219 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF--N-HVVGVVHTNYLEYIKREK 295 (612)
Q Consensus 219 ~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~--~-pvv~~~H~~~~~~~~~~~ 295 (612)
.+. ...+....+.+.+.+.+||+||++.+..+.... .....+. . +.+...|.........
T Consensus 62 ------~~~-------~~~~~~~~l~~~l~~~~~Div~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (413)
T 3oy2_A 62 ------GLN-------EQGFYYSGLSEFIDVHKPDIVMIYNDPIVIGNY--LLAMGKCSHRTKIVLYVDLVSKNIREN-- 124 (413)
T ss_dssp ------TCC-------STTCCHHHHHHHHHHHCCSEEEEEECHHHHHHH--HHHGGGCCSCCEEEEEECCCSBSCCGG--
T ss_pred ------ccc-------cccchHHHHHHHHHhcCCCEEEEcchHHHHHHH--HHHhccCCCCCceeeeccccchhhHHH--
Confidence 000 001122345667777899999998544332111 1111111 1 4455555543221100
Q ss_pred cchhHHHHHHHHHHHHHHhcCC--eEEEeChhhhc----c-CCCcEEEe-CCCCCCCCCCCccchhhhhhccCC--CCcE
Q 007215 296 NGALQAFFVKHINNWVTRAYCD--KVLRLSAATQD----L-PKSVICNV-HGVNPKFLQIGEKVATDREQGQQA--FSKG 365 (612)
Q Consensus 296 ~~~~~~~~~~~i~~~~~~~~ad--~vI~~S~~~~~----~-~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~--~~~~ 365 (612)
+ +++.+ .+| .++++|+..++ + .+.++.++ ||+|++.| ...+.++++++ ++++
T Consensus 125 -----------~-~~~~~-~~~~~~ii~~S~~~~~~~~~~~~~~~~~vi~ngvd~~~~-----~~~~~~~~~~~~~~~~~ 186 (413)
T 3oy2_A 125 -----------L-WWIFS-HPKVVGVMAMSKCWISDICNYGCKVPINIVSHFVDTKTI-----YDARKLVGLSEYNDDVL 186 (413)
T ss_dssp -----------G-GGGGG-CTTEEEEEESSTHHHHHHHHTTCCSCEEECCCCCCCCCC-----TTHHHHTTCGGGTTSEE
T ss_pred -----------H-HHHHh-ccCCceEEEcCHHHHHHHHHcCCCCceEEeCCCCCHHHH-----HHHHHhcCCCcccCceE
Confidence 1 22222 467 99999997655 2 24677777 89998877 33455566655 6789
Q ss_pred EEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH------HHHHHHHHHcCCc---------eEEecCCCCHH
Q 007215 366 AYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA------YEVQSAAKRLDLN---------LNFQKGRDHAD 430 (612)
Q Consensus 366 il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~------~~l~~~~~~l~l~---------v~f~g~~~~~~ 430 (612)
++|+||+.+.||++.+++|++++.++.++++|+|+|.|+.. +.++++++++++. +.|.|.+++.+
T Consensus 187 il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~ 266 (413)
T 3oy2_A 187 FLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDER 266 (413)
T ss_dssp EECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHH
T ss_pred EEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHH
Confidence 99999999999999999999999888899999999999875 8888999998887 55678888666
Q ss_pred --HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccc-cCCc---------------EE--ec--CCHHHH
Q 007215 431 --DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SFPN---------------CL--TY--KTSEDF 488 (612)
Q Consensus 431 --~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~-~~~~---------------g~--l~--~d~~~l 488 (612)
++++.||++|+||..|+||++++||||||+|||+|+.|+..+++ ++.+ |+ ++ +|++++
T Consensus 267 ~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~l 346 (413)
T 3oy2_A 267 VDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDL 346 (413)
T ss_dssp HHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHH
T ss_pred HHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHH
Confidence 99999999999999999999999999999999999999865554 4555 66 66 899999
Q ss_pred HHHHHHHHhCCCCCCC-------HHHHhcCCHHHHHHHHHHHHhccccccCC
Q 007215 489 VARVKEALANDPQPLT-------PEQRYNLSWEAATQRFIEYSELNRILNNN 533 (612)
Q Consensus 489 a~aI~~ll~~~~~~~~-------~~~~~~~sWe~~~~~~~~~y~~~~~~~~~ 533 (612)
+++| ++++ +++.+. +...+.|+|+.++++|.+.|+ ++++..
T Consensus 347 a~~i-~l~~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~--~~~~~~ 394 (413)
T 3oy2_A 347 VEAF-TFFK-DEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFN--SLLRVE 394 (413)
T ss_dssp HHHH-HHTT-SHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH--HHTC--
T ss_pred HHHH-HHhc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHhhc
Confidence 9999 9995 444322 222357999999999999999 777654
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.97 E-value=1.5e-30 Score=280.97 Aligned_cols=334 Identities=12% Similarity=0.090 Sum_probs=205.6
Q ss_pred CCCceEEEEeCCCCCCc-CcccccHHHHHH-HhhhcCCccEEEEecccCCCCceEEc-CCcccCCchhHHHHHHHHHHhh
Q 007215 138 DKKRNVAIVTTASLPWM-TGTAVNPLFRAA-YLAKTEQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEER 214 (612)
Q Consensus 138 ~~~~kI~ivt~~~~P~~-~G~a~~~l~~~~-~La~~~~~~Vtl~~p~l~~G~~V~V~-p~~~f~~~~~~~~~~~~w~~~~ 214 (612)
..+|||+++++.|.|.. .| +++.+.+++ +|+++ ||+|+|+ +.. .+.. ... .+
T Consensus 44 ~~~mrI~~v~~~~~p~~~~G-G~~~v~~la~~L~~~--------------GheV~Vvt~~~---~~~~-~~~------~~ 98 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFG-GISTALKLFEQFDNK--------------KFKKRIILTDA---TPNP-KDL------QS 98 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSH-HHHHHHHHHTTSCTT--------------TCEEEEEESSC---CCCH-HHH------GG
T ss_pred CCCceEEEEeCCCCcccccc-HHHHHHHHHHHHHHc--------------CCceEEEEecC---CCCh-HHH------Hh
Confidence 34699999999999973 45 345677777 89999 9999984 331 1211 111 11
Q ss_pred hCCCCCceecccCCCcccccccccCh-HhHhhhccCCCccEEEECCCchhHHhhhhHHH-hh---hCC-CEEEEEeCCcH
Q 007215 215 VGFKADFKISFYPGKFSKERRSIIPA-GDTSQFIPSKDADIAILEEPEHLNWYHHGKRW-TD---KFN-HVVGVVHTNYL 288 (612)
Q Consensus 215 v~~~~~~~i~~~~~~y~~~~~si~~~-~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~-~~---~~~-pvv~~~H~~~~ 288 (612)
+ .......+... ......+... ..+...+...++|+||++.+...........| .. ..+ +.+..+|+..+
T Consensus 99 ~---~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 174 (413)
T 2x0d_A 99 F---KSFKYVMPEED-KDFALQIVPFNDRYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEP 174 (413)
T ss_dssp G---TTSEECCTTCC-CCCSEEEEECSCCTTCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGG
T ss_pred h---hccceeeccCC-ccccceeeeccccccccccCCCCCEEEEehHHHHHHHHHhhhhhhhhcccccCcEEEEEeechh
Confidence 1 11111111100 0000001000 01112222357999999753322111100001 01 123 77888888754
Q ss_pred hHHHHhccchhHHHHHHHHHHHHHHhcCC--eEEEeChhhhc------cCCCcEEEe-CCCCCCCCCCCccchhhhhhcc
Q 007215 289 EYIKREKNGALQAFFVKHINNWVTRAYCD--KVLRLSAATQD------LPKSVICNV-HGVNPKFLQIGEKVATDREQGQ 359 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~~~~~~~ad--~vI~~S~~~~~------~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~ 359 (612)
.+. ... .. ..+.+...+ .++ .+|++|+.+++ ++..++.++ ||+|++.|.+. . ..
T Consensus 175 ~~~---~~~--~~---~~~~~~~~~-~~~~~~vi~~S~~~~~~l~~~g~~~~~~~~i~~g~d~~~~~~~-------~-~~ 237 (413)
T 2x0d_A 175 GFY---QWS--SQ---YVLAESTYK-YRGPQIAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTLKNYI-------N-DK 237 (413)
T ss_dssp GGS---CSS--HH---HHHHHHTTS-CCSCEEEEEESHHHHHHHHHHTCCCSEEEEECCCCCHHHHTTT-------T-SC
T ss_pred hcC---ccC--hH---HHHHHHHhc-cCCceEEEEcCHHHHHHHHHcCCCCCceEEeCCCcCchhhccc-------c-cc
Confidence 321 111 01 112222222 233 58999998765 333456666 89986654331 0 11
Q ss_pred CCCCcEEEEEecc-CCccCHHHHHHHHHHhhccCCC---eEEEEEecCCCHHHHHHHHHHcCC--ceEEecCCCCHH--H
Q 007215 360 QAFSKGAYFLGKM-VWAKGYRELIDLLAKHKNDLDG---FKLDVFGNGEDAYEVQSAAKRLDL--NLNFQKGRDHAD--D 431 (612)
Q Consensus 360 ~~~~~~il~vGrl-~~~Kg~~~Li~A~~~l~~~~~~---~~LvIvG~g~~~~~l~~~~~~l~l--~v~f~g~~~~~~--~ 431 (612)
.+.++.++++||+ .++||++.||+|++.+.++.|+ ++|+++|+|+.. .++++ +|+|+|.+++.+ +
T Consensus 238 ~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-------~~l~~~~~v~f~G~~~~~~l~~ 310 (413)
T 2x0d_A 238 RQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-------IALGKGIHLNSLGKLTLEDYAD 310 (413)
T ss_dssp CCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-------EEEETTEEEEEEESCCHHHHHH
T ss_pred cCCCCEEEEEecCchhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-------hhcCCcCcEEEcCCCCHHHHHH
Confidence 1335678899996 6889999999999999877775 899999998764 23444 389999998776 9
Q ss_pred HHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC--HHH
Q 007215 432 SLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT--PEQ 507 (612)
Q Consensus 432 ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~--~~~ 507 (612)
+|+.||+||+||.+|+||++++||||||+|||+++.|..+.+.++.+|+++ +|+++++++|.++++++..+.+ +..
T Consensus 311 ~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~~ 390 (413)
T 2x0d_A 311 LLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNKYENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDVDKKES 390 (413)
T ss_dssp HHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEECBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHHTC-------CC
T ss_pred HHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeCCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHHhHHHH
Confidence 999999999999999999999999999999999765556666667899877 8999999999999965544333 111
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 007215 508 RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 508 ~~~~sWe~~~~~~~~~y~ 525 (612)
...|+|++++++ .+.|+
T Consensus 391 ~~~~~W~~~~~~-~~~~~ 407 (413)
T 2x0d_A 391 SNMMFYINEFNE-FSFIK 407 (413)
T ss_dssp BSCGGGCCCC----TTHH
T ss_pred HHhCCHHHHHHH-HHHHH
Confidence 245899988776 55554
No 16
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.95 E-value=1.7e-28 Score=264.48 Aligned_cols=233 Identities=18% Similarity=0.229 Sum_probs=170.5
Q ss_pred CccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcH-hHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhc
Q 007215 251 DADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL-EYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD 328 (612)
Q Consensus 251 ~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~ 328 (612)
++|+||....... .+. ...+..+ |++.++|+... ... .. ....+.+++...+ .+|.++++|+.+++
T Consensus 124 ~~DvIh~~~~~~~-~~~---~~~~~~~~p~v~~~h~~~~~~~~---~~----~~~~~~~~~~~~~-~ad~vi~~S~~~~~ 191 (406)
T 2hy7_A 124 ESDVIVFESGIAV-AFI---ELAKRVNPAAKLVYRASDGLSTI---NV----ASYIEREFDRVAP-TLDVIALVSPAMAA 191 (406)
T ss_dssp HCSEEEEESSGGG-GGH---HHHHHHCTTSEEEEEESSCHHHH---TC----CHHHHHHHHHHGG-GCSEEEESCGGGGG
T ss_pred CCCEEEECCchHH-HHH---HHHHHhCCCEEEEEeccchhhcc---cc----cHHHHHHHHHHHH-hCCEEEEcCHHHHH
Confidence 6999995332211 111 2334446 99999997543 211 11 1122333444333 58999999998877
Q ss_pred cCCC--cEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC
Q 007215 329 LPKS--VICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED 405 (612)
Q Consensus 329 ~~~~--~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~ 405 (612)
...+ ++.++ ||+|.+.|.+.... ..+.+++++|+||+.+.||+ +++ +.++.++++|+|+|+|+
T Consensus 192 ~~~~~~~i~vipngvd~~~f~~~~~~-------~~~~~~~i~~vGrl~~~Kg~---~~~---l~~~~~~~~l~ivG~g~- 257 (406)
T 2hy7_A 192 EVVSRDNVFHVGHGVDHNLDQLGDPS-------PYAEGIHAVAVGSMLFDPEF---FVV---ASKAFPQVTFHVIGSGM- 257 (406)
T ss_dssp GCSCSTTEEECCCCBCTTHHHHHCSC-------SCCSSEEEEEECCTTBCHHH---HHH---HHHHCTTEEEEEESCSS-
T ss_pred HHHhcCCEEEEcCCcChHhcCccccc-------ccCCCcEEEEEeccccccCH---HHH---HHHhCCCeEEEEEeCch-
Confidence 3322 67777 89998776543211 01223789999999999999 333 33445899999999987
Q ss_pred HHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHH-------HcCCcEEeeCCCCccccc
Q 007215 406 AYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEAL-------AMGKFVICADHPSNEFFR 474 (612)
Q Consensus 406 ~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAM-------A~G~PVVas~~gg~~~i~ 474 (612)
++++++. |.|+|.+++.+ ++++.||++|+||..|+||++++||| |||+|||+|+. +.
T Consensus 258 -------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~-----v~ 325 (406)
T 2hy7_A 258 -------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA-----VV 325 (406)
T ss_dssp -------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG-----GT
T ss_pred -------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh-----cc
Confidence 4455553 99999998666 99999999999999999999999999 99999999988 66
Q ss_pred cCCcEEe-c--CCHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHHHHHHHH--Hh
Q 007215 475 SFPNCLT-Y--KTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEY--SE 525 (612)
Q Consensus 475 ~~~~g~l-~--~d~~~la~aI~~ll~~~~~~~~~~~~~~~sWe~~~~~~~~~--y~ 525 (612)
++.+|++ + +|+++|+++|.++++++. + ...+.|+|+.+++++++. |+
T Consensus 326 ~~~~G~l~v~~~d~~~la~ai~~ll~~~~-~---~~~~~~sw~~~a~~~~~~~~y~ 377 (406)
T 2hy7_A 326 GPYKSRFGYTPGNADSVIAAITQALEAPR-V---RYRQCLNWSDTTDRVLDPRAYP 377 (406)
T ss_dssp CSCSSEEEECTTCHHHHHHHHHHHHHCCC-C---CCSCCCBHHHHHHHHHCGGGSG
T ss_pred cCcceEEEeCCCCHHHHHHHHHHHHhCcc-h---hhhhcCCHHHHHHHHHHhhccc
Confidence 6778888 6 899999999999996654 2 234679999999999999 88
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.94 E-value=7.2e-26 Score=238.56 Aligned_cols=247 Identities=11% Similarity=0.016 Sum_probs=181.7
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+||++.+..... . ...++..+ |++.+.|+.+... .++++.+ .+|.+
T Consensus 86 ~~l~~~l~~~~pDvv~~~~~~~~~~-~--~~~~~~~~~p~v~~~~~~~~~~----------------~~~~~~~-~~d~v 145 (364)
T 1f0k_A 86 RQARAIMKAYKPDVVLGMGGYVSGP-G--GLAAWSLGIPVVLHEQNGIAGL----------------TNKWLAK-IATKV 145 (364)
T ss_dssp HHHHHHHHHHCCSEEEECSSTTHHH-H--HHHHHHTTCCEEEEECSSSCCH----------------HHHHHTT-TCSEE
T ss_pred HHHHHHHHhcCCCEEEEeCCcCchH-H--HHHHHHcCCCEEEEecCCCCcH----------------HHHHHHH-hCCEE
Confidence 3456666678999999987652211 1 23445556 9998888764321 1223223 68999
Q ss_pred EEeChhhhccCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEE-EEeccCCccCHHHHHHHHHHhhccCCCeE-
Q 007215 320 LRLSAATQDLPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAY-FLGKMVWAKGYRELIDLLAKHKNDLDGFK- 396 (612)
Q Consensus 320 I~~S~~~~~~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il-~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~- 396 (612)
++.|+.. ++ ++.++ ||+|++++.+.. .+.+++.+++++.++ +.|++.+.||.+.+++|++.+.+ +++
T Consensus 146 ~~~~~~~--~~--~~~~i~n~v~~~~~~~~~---~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~ 215 (364)
T 1f0k_A 146 MQAFPGA--FP--NAEVVGNPVRTDVLALPL---PQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTI 215 (364)
T ss_dssp EESSTTS--SS--SCEECCCCCCHHHHTSCC---HHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEE
T ss_pred EecChhh--cC--CceEeCCccchhhcccch---hhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEE
Confidence 9988765 43 45566 899977665432 234455555556554 55689999999999999999865 677
Q ss_pred EEEEecCCCHHHHHHHHHHcCCc-eEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCcc----
Q 007215 397 LDVFGNGEDAYEVQSAAKRLDLN-LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE---- 471 (612)
Q Consensus 397 LvIvG~g~~~~~l~~~~~~l~l~-v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~---- 471 (612)
++++|.++ .+.+++++++++++ |.|+|.+++..++++.||++|+||- |++++|||+||+|||+++.+|.+
T Consensus 216 l~i~G~~~-~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~ 290 (364)
T 1f0k_A 216 WHQSGKGS-QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQY 290 (364)
T ss_dssp EEECCTTC-HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCCTTCHHH
T ss_pred EEEcCCch-HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCCchhHH
Confidence 56788887 57888888888864 9999999888899999999999983 99999999999999999998742
Q ss_pred ----ccccCCcEEec--CC--HHHHHHHHHHHHhCCCCCCCHHH------HhcCCHHHHHHHHHHHHh
Q 007215 472 ----FFRSFPNCLTY--KT--SEDFVARVKEALANDPQPLTPEQ------RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 472 ----~i~~~~~g~l~--~d--~~~la~aI~~ll~~~~~~~~~~~------~~~~sWe~~~~~~~~~y~ 525 (612)
++.+...|+++ +| +++++++|.++ +++.++++. ...|+|+++++++.+.|+
T Consensus 291 ~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 355 (364)
T 1f0k_A 291 WNALPLEKAGAAKIIEQPQLSVDAVANTLAGW---SRETLLTMAERARAASIPDATERVANEVSRVAR 355 (364)
T ss_dssp HHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC---CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCcEEEeccccCCHHHHHHHHHhc---CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 56665568888 55 99999999988 333332222 246899999999999998
No 18
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.93 E-value=9.8e-26 Score=252.44 Aligned_cols=326 Identities=11% Similarity=0.015 Sum_probs=219.9
Q ss_pred CCCCceEEEEeCCCCCCcCcccccHHHHHH-H--hhhcCCccEEEEecccCCCCceEEcCCcccCCchhHHHHHHHHHHh
Q 007215 137 SDKKRNVAIVTTASLPWMTGTAVNPLFRAA-Y--LAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEE 213 (612)
Q Consensus 137 ~~~~~kI~ivt~~~~P~~~G~a~~~l~~~~-~--La~~~~~~Vtl~~p~l~~G~~V~V~p~~~f~~~~~~~~~~~~w~~~ 213 (612)
..+++||++++..+.+ +| +.+.+..+. . |.+. |++|+|+.... ..... + ...+..
T Consensus 202 ~~~~~rI~~~~~~~~~--~g-~~~~~~~l~~~L~~~~~--------------~~~v~~~~~~~-~~~~~---~-~~~~~~ 259 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGA--HP-TGLLTVALFEALQRRQP--------------DLQMHLFATSG-DDGST---L-RTRLAQ 259 (568)
T ss_dssp SSSCEEEEEEESCSSS--SH-HHHHHHHHHHHHHHHCT--------------TEEEEEEESSC-CCSCH---H-HHHHHH
T ss_pred CCCCeEEEEECccccc--Ch-HHHHHHHHHhhccCCcc--------------cEEEEEEECCC-CCccH---H-HHHHHh
Confidence 3457899999998854 23 556566666 6 6666 78888742200 00111 1 111211
Q ss_pred hhCCCCCceecccCCCcccccccccChHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCCCEEEEEeCCcHhHHHH
Q 007215 214 RVGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKR 293 (612)
Q Consensus 214 ~v~~~~~~~i~~~~~~y~~~~~si~~~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~ 293 (612)
. . .+..... .....+.+.+.+.+|||||........... ..+..+..|++.++|.......
T Consensus 260 ~-~-----~~~~~~~---------~~~~~l~~~i~~~~~Div~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 320 (568)
T 2vsy_A 260 A-S-----TLHDVTA---------LGHLATAKHIRHHGIDLLFDLRGWGGGGRP--EVFALRPAPVQVNWLAYPGTSG-- 320 (568)
T ss_dssp T-S-----EEEECTT---------CCHHHHHHHHHHTTCSEEEECSSCTTCSSC--HHHHTCCSSEEEEESSSSSCCC--
T ss_pred c-C-----eEEECCC---------CCHHHHHHHHHhCCCCEEEECCCCCCcchH--HHHhcCCCceeEeeecCCcccC--
Confidence 1 1 1100010 123567778888999999985433211111 1122232377777775321100
Q ss_pred hccchhHHHHHHHHHHHHHHhcCCeEEEeChhhhccCCCcEEEe-CCCCCCCCC-CCccchhhhhhccCCCCcEEEEEec
Q 007215 294 EKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNV-HGVNPKFLQ-IGEKVATDREQGQQAFSKGAYFLGK 371 (612)
Q Consensus 294 ~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~~~~~~~~i~vi-nGVd~~~f~-~~~~~~~~~~~~~~~~~~~il~vGr 371 (612)
. . .+....+|.++++|+..+++. +++.++ |.+++.... +......+.+++++++ ++++++|+
T Consensus 321 --~----~--------~~~~~~~d~~i~~s~~~~~~~-~~i~~ipn~~~~~~~~~~~~~~~~r~~~~~~~~-~~v~~~g~ 384 (568)
T 2vsy_A 321 --A----P--------WMDYVLGDAFALPPALEPFYS-EHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQ-GVVLCCFN 384 (568)
T ss_dssp --C----T--------TCCEEEECTTTSCTTTGGGCS-SEEEECSSCSCCCCTTCCCCCCCCTGGGTCCTT-SCEEEECC
T ss_pred --C----C--------CceEEEECCCcCCcccccCCc-ceeEcCCCcCCCCCCCCCCCCCCCccccCCCCC-CEEEEeCC
Confidence 0 0 000114788899999877765 677777 544432211 1123345566777654 45669999
Q ss_pred cCCccCHHHHHHHHHHhhccCCCeEEEEEe-cCCCHHHHHHHHHHcCCc---eEEecCCCCHH--HHHhccceEEeccCC
Q 007215 372 MVWAKGYRELIDLLAKHKNDLDGFKLDVFG-NGEDAYEVQSAAKRLDLN---LNFQKGRDHAD--DSLHGYKVFINPSIS 445 (612)
Q Consensus 372 l~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG-~g~~~~~l~~~~~~l~l~---v~f~g~~~~~~--~ll~~aDv~V~PS~~ 445 (612)
+.+ ||++.+++|+.++.++.|+++|+|+| +|+..+.+++.++++++. |.|+|.+++.+ ++++.+|+||+||.+
T Consensus 385 ~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~ 463 (568)
T 2vsy_A 385 NSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY 463 (568)
T ss_dssp CGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS
T ss_pred ccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC
Confidence 999 99999999999998888999999999 888889999999999874 99999998554 999999999999999
Q ss_pred CcchHHHHHHHHcCCcEEe-------eCCC-------CccccccCCcEEecCCHHHHHHHHHHHHhCCCCCCCH------
Q 007215 446 DVLCTATAEALAMGKFVIC-------ADHP-------SNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP------ 505 (612)
Q Consensus 446 E~fgl~llEAMA~G~PVVa-------s~~g-------g~~~i~~~~~g~l~~d~~~la~aI~~ll~~~~~~~~~------ 505 (612)
+||++++||||||+|||+ |+.| |..+++. +|+++++++|.+++++ ++.+..
T Consensus 464 -~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~-------~~~~~la~~i~~l~~~-~~~~~~~~~~~~ 534 (568)
T 2vsy_A 464 -NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV-------ADDAAFVAKAVALASD-PAALTALHARVD 534 (568)
T ss_dssp -CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBC-------SSHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_pred -CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhc-------CCHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 999999999999999999 9988 7665544 3999999999999964 332221
Q ss_pred HH---HhcCCHHHHHHHHHHHHhcccccc
Q 007215 506 EQ---RYNLSWEAATQRFIEYSELNRILN 531 (612)
Q Consensus 506 ~~---~~~~sWe~~~~~~~~~y~~~~~~~ 531 (612)
.. ...|+|+.+++++.+.|+ +++.
T Consensus 535 ~~~~~~~~f~~~~~~~~~~~~y~--~~~~ 561 (568)
T 2vsy_A 535 VLRRASGVFHMDGFADDFGALLQ--ALAR 561 (568)
T ss_dssp HHHHHSSTTCHHHHHHHHHHHHH--HHHH
T ss_pred HhhhcCCCCCHHHHHHHHHHHHH--HHHH
Confidence 11 256999999999999998 6553
No 19
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.92 E-value=4.6e-25 Score=233.14 Aligned_cols=265 Identities=9% Similarity=-0.005 Sum_probs=177.0
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+||++.+....+.. ...++..+ |++.+.|+... +. ....+..+ +.+.+....+|.+
T Consensus 85 ~~l~~~l~~~~pDvv~~~~~~~~~~~~--~~~~~~~~ip~v~~~~~~~~-~~---~~~~~~~~----~~~~~~~~~~d~i 154 (375)
T 3beo_A 85 EGLDKVMKEAKPDIVLVHGDTTTTFIA--SLAAFYNQIPVGHVEAGLRT-WD---KYSPYPEE----MNRQLTGVMADLH 154 (375)
T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHHH--HHHHHHTTCCEEEESCCCCC-SC---TTSSTTHH----HHHHHHHHHCSEE
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHH--HHHHHHHCCCEEEEeccccc-cc---ccCCChhH----hhhhHHhhhhhee
Confidence 346667778899999998764443332 23445566 88866554311 00 00011111 2222222258999
Q ss_pred EEeChhhhc------cCCCcEEEe-CC-CCCCCCCCC--ccchhhhhhccCCCCcEEEEEeccCCc-cCHHHHHHHHHHh
Q 007215 320 LRLSAATQD------LPKSVICNV-HG-VNPKFLQIG--EKVATDREQGQQAFSKGAYFLGKMVWA-KGYRELIDLLAKH 388 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi-nG-Vd~~~f~~~--~~~~~~~~~~~~~~~~~il~vGrl~~~-Kg~~~Li~A~~~l 388 (612)
+++|+..++ ++++++.++ || +|...+.+. .....+.++ ++.+.+++++||+.+. ||++.+++|++++
T Consensus 155 i~~s~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~li~a~~~l 232 (375)
T 3beo_A 155 FSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKL--GNNRLVLMTAHRRENLGEPMRNMFRAIKRL 232 (375)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT--TTSEEEEEECCCGGGTTHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHcCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc--cCCCeEEEEecccccchhHHHHHHHHHHHH
Confidence 999997655 344578777 77 775444322 122233332 2333467799999875 9999999999999
Q ss_pred hccCCCeEEEEEecCCCHHHHHHHHHHc-C--CceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEE
Q 007215 389 KNDLDGFKLDVFGNGEDAYEVQSAAKRL-D--LNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVI 463 (612)
Q Consensus 389 ~~~~~~~~LvIvG~g~~~~~l~~~~~~l-~--l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVV 463 (612)
.++.|++++++ |.|++. .+++.++++ + -+|.|+|.....+ ++++.||++|+|| |.+++||||||+|||
T Consensus 233 ~~~~~~~~~i~-~~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi 305 (375)
T 3beo_A 233 VDKHEDVQVVY-PVHMNP-VVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVL 305 (375)
T ss_dssp HHHCTTEEEEE-ECCSCH-HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEE
T ss_pred HhhCCCeEEEE-eCCCCH-HHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEE
Confidence 88778898554 666653 333333332 3 2499988776555 9999999999998 777999999999999
Q ss_pred eeCC-CCccccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHHHHHh
Q 007215 464 CADH-PSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 464 as~~-gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+++. |+.++++...+|+++ .|+++++++|.++++++ +.++ +.....++|+++++.+.+.++
T Consensus 306 ~~~~~~~~~e~v~~g~g~~v~~d~~~la~~i~~ll~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 306 VLRDTTERPEGIEAGTLKLAGTDEETIFSLADELLSDK-EAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp ECSSCCSCHHHHHTTSEEECCSCHHHHHHHHHHHHHCH-HHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred EecCCCCCceeecCCceEEcCCCHHHHHHHHHHHHhCh-HhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 9964 776666665599988 89999999999999643 2111 111246899999999888765
No 20
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.91 E-value=4.3e-24 Score=205.90 Aligned_cols=171 Identities=13% Similarity=0.152 Sum_probs=144.1
Q ss_pred EeCCCCCCCCC--CCc------cchhhhhhccCCCCcEEEEEeccC-CccCHHHHHHHHHHhh--ccCCCeEEEEEecCC
Q 007215 336 NVHGVNPKFLQ--IGE------KVATDREQGQQAFSKGAYFLGKMV-WAKGYRELIDLLAKHK--NDLDGFKLDVFGNGE 404 (612)
Q Consensus 336 vinGVd~~~f~--~~~------~~~~~~~~~~~~~~~~il~vGrl~-~~Kg~~~Li~A~~~l~--~~~~~~~LvIvG~g~ 404 (612)
+.||||++.|. +.. ....+.++++++ +++++|+|++. +.||++.+++|+..+. ++.++++|+|+|.++
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~-~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~ 80 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKFGMDE-GVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGD 80 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCS-CEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBC
T ss_pred CCCccChhhccccccccchhhHHHHHHHHcCCCC-CCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCC
Confidence 34899999998 765 455677777765 46999999999 9999999999999997 777899999999998
Q ss_pred --CHHHHHHHHHHcCCceEE-ecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcE
Q 007215 405 --DAYEVQSAAKRLDLNLNF-QKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNC 479 (612)
Q Consensus 405 --~~~~l~~~~~~l~l~v~f-~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g 479 (612)
..+.+++++++++ .|+| +|.+++.+ ++++.||++|+||..|+||++++|||+||+|||+++.++..++.++.+|
T Consensus 81 ~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~~~~~g 159 (200)
T 2bfw_A 81 PELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETG 159 (200)
T ss_dssp HHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHCCTTTC
T ss_pred hHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHcCCCce
Confidence 7788999999988 8999 99998555 9999999999999999999999999999999999999986555577888
Q ss_pred Eec--CCHHHHHHHHHHHHhCCCCCCCHHHH
Q 007215 480 LTY--KTSEDFVARVKEALANDPQPLTPEQR 508 (612)
Q Consensus 480 ~l~--~d~~~la~aI~~ll~~~~~~~~~~~~ 508 (612)
+++ +|+++++++|.++++.+++.+.++.+
T Consensus 160 ~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 190 (200)
T 2bfw_A 160 ILVKAGDPGELANAILKALELSRSDLSKFRE 190 (200)
T ss_dssp EEECTTCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888 69999999999999524444444443
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.90 E-value=5.5e-24 Score=233.40 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=141.8
Q ss_pred CcEEEe-CCCCCCCCCCCc-------cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC----eEEEE
Q 007215 332 SVICNV-HGVNPKFLQIGE-------KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDV 399 (612)
Q Consensus 332 ~~i~vi-nGVd~~~f~~~~-------~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~----~~LvI 399 (612)
.++.++ ||||++.|.+.. ....+++++ ++++|+++||+++.||++.+|+|++++.++.|+ ++|++
T Consensus 219 ~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~ 295 (482)
T 1uqt_A 219 FRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQ 295 (482)
T ss_dssp EEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEE
T ss_pred EEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEE
Confidence 456677 799987664321 123444453 568999999999999999999999999877664 78999
Q ss_pred EecCC-----C----HHHHHHHHHHcCC--------ceEE-ecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcC
Q 007215 400 FGNGE-----D----AYEVQSAAKRLDL--------NLNF-QKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMG 459 (612)
Q Consensus 400 vG~g~-----~----~~~l~~~~~~l~l--------~v~f-~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G 459 (612)
+|.+. + .+++++++.+.+. .|.| .|.++..+ .+|+.||+||+||..||||++++||||||
T Consensus 296 vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g 375 (482)
T 1uqt_A 296 IAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375 (482)
T ss_dssp ECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHS
T ss_pred EECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhC
Confidence 99632 1 1344455544321 2676 46666655 99999999999999999999999999999
Q ss_pred C-----cEEeeCCCC-ccccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHHHHHh
Q 007215 460 K-----FVICADHPS-NEFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 460 ~-----PVVas~~gg-~~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+ |||+|+.+| .+++ + +|+++ .|++++|++|.++++++++.++ +.....++|+..+++|++.|+
T Consensus 376 ~~~~~gpvV~S~~~G~~~~l-~--~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~ 452 (482)
T 1uqt_A 376 DPANPGVLVLSQFAGAANEL-T--SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLK 452 (482)
T ss_dssp CTTSCCEEEEETTBGGGGTC-T--TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCHHHh-C--CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7 999999776 5555 3 67777 7999999999999965543222 222345899999999999998
No 22
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.90 E-value=7e-23 Score=226.83 Aligned_cols=275 Identities=14% Similarity=0.100 Sum_probs=169.5
Q ss_pred CCCccEEEECCCchhHHhhhhHHHhh-hCC-CEEEEEeCCcH-hHHHHhccch---------hH--H-----HHHHHHHH
Q 007215 249 SKDADIAILEEPEHLNWYHHGKRWTD-KFN-HVVGVVHTNYL-EYIKREKNGA---------LQ--A-----FFVKHINN 309 (612)
Q Consensus 249 ~~~pDVVh~~~p~~l~~~~~~~~~~~-~~~-pvv~~~H~~~~-~~~~~~~~~~---------~~--~-----~~~~~i~~ 309 (612)
..+|||+|+|++....... ..+. ... +.|+++|..-. ++........ .. . .-...+++
T Consensus 179 ~~~pdIiH~HDW~tg~~~~---~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EK 255 (725)
T 3nb0_A 179 SQHAIVAHFHEWLAGVALP---LCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIER 255 (725)
T ss_dssp CSEEEEEEEESGGGCTHHH---HHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcEEEeCchhhhHHHH---HHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHH
Confidence 3679999999876543322 2222 234 89999998732 1210000000 00 0 01233444
Q ss_pred HHHHhcCCeEEEeChhhhc-------cCCCcEEEeCCCCCCCCCCCc-----cchhhhhh------------ccCCCCcE
Q 007215 310 WVTRAYCDKVLRLSAATQD-------LPKSVICNVHGVNPKFLQIGE-----KVATDREQ------------GQQAFSKG 365 (612)
Q Consensus 310 ~~~~~~ad~vI~~S~~~~~-------~~~~~i~vinGVd~~~f~~~~-----~~~~~~~~------------~~~~~~~~ 365 (612)
.... +||.|+++|+.+++ .+.+.+ ++||||.+.|.|.. +...+.++ +++.++..
T Consensus 256 aga~-~AD~ITTVS~~yA~Ei~~Ll~r~~d~i-IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~l 333 (725)
T 3nb0_A 256 AAAH-SADVFTTVSQITAFEAEHLLKRKPDGI-LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTL 333 (725)
T ss_dssp HHHH-HSSEEEESSHHHHHHHHHHTSSCCSEE-CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEE
T ss_pred HHHH-hCCEEEECCHHHHHHHHHHhcCCCCEE-EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCcee
Confidence 4444 79999999997655 222334 55999999998851 11111111 33334444
Q ss_pred EE-EEeccC-CccCHHHHHHHHHHhhcc-------CCCeEEEEEecCCCH------------------------------
Q 007215 366 AY-FLGKMV-WAKGYRELIDLLAKHKND-------LDGFKLDVFGNGEDA------------------------------ 406 (612)
Q Consensus 366 il-~vGrl~-~~Kg~~~Li~A~~~l~~~-------~~~~~LvIvG~g~~~------------------------------ 406 (612)
++ .+||+. .+||++.+++|+.++... ..-+.|+|+..+...
T Consensus 334 iifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 413 (725)
T 3nb0_A 334 YFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRI 413 (725)
T ss_dssp EEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHH
Confidence 44 579999 789999999999888632 123566666544111
Q ss_pred -----------------------------------------------------------HHHHHHHHHcCCc--------
Q 007215 407 -----------------------------------------------------------YEVQSAAKRLDLN-------- 419 (612)
Q Consensus 407 -----------------------------------------------------------~~l~~~~~~l~l~-------- 419 (612)
+.+.+.++++++.
T Consensus 414 ~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVK 493 (725)
T 3nb0_A 414 FDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVK 493 (725)
T ss_dssp HHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEE
T ss_pred HHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCcee
Confidence 1111223334432
Q ss_pred eEEecCCC---------CHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccC-------CcEEec
Q 007215 420 LNFQKGRD---------HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRSF-------PNCLTY 482 (612)
Q Consensus 420 v~f~g~~~---------~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~-------~~g~l~ 482 (612)
|.|++... +..++++.||+||+||++|+||++++||||||+|||+|+.||..+ +.++ .+|+++
T Consensus 494 VIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV 573 (725)
T 3nb0_A 494 MIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYI 573 (725)
T ss_dssp EEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEE
T ss_pred EEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceEEE
Confidence 45654433 235899999999999999999999999999999999999999544 4443 357655
Q ss_pred -----CCHHHHHHHHHHHH----hCCCCCCCHH------HHhcCCHHHHHHHHHHHHhccccc
Q 007215 483 -----KTSEDFVARVKEAL----ANDPQPLTPE------QRYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 483 -----~d~~~la~aI~~ll----~~~~~~~~~~------~~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
.|+++++++|.+++ ..++..+..+ .+..|+|+.++++|+++|+ .++
T Consensus 574 ~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye--~aL 634 (725)
T 3nb0_A 574 VDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQ--LAL 634 (725)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHH--HHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHH
Confidence 35665555555544 3333322221 2356999999999999999 555
No 23
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.90 E-value=3.2e-24 Score=227.63 Aligned_cols=268 Identities=9% Similarity=-0.042 Sum_probs=177.5
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+||++.+....+.. ...++..+ |++.+.|+... +. ....+. ....+.+....+|.+
T Consensus 76 ~~l~~~l~~~~pDvv~~~~~~~~~~~~--~~~a~~~~ip~v~~~~~~~~-~~---~~~~~~----~~~~~~~~~~~~d~i 145 (384)
T 1vgv_A 76 EGLKPILAEFKPDVVLVHGDTTTTLAT--SLAAFYQRIPVGHVEAGLRT-GD---LYSPWP----EEANRTLTGHLAMYH 145 (384)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHHHH--HHHHHTTTCCEEEESCCCCC-SC---TTSSTT----HHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHH--HHHHHHHCCCEEEEeccccc-cc---ccCCCc----hHhhHHHHHhhccEE
Confidence 456667778899999998763333332 23445556 98877776421 10 000111 112222223358999
Q ss_pred EEeChhhhc------cCCCcEEEe-CCC-CCCCCCCCc-------cchhhhhhc-cCCCC-cEEEEEeccCCc-cCHHHH
Q 007215 320 LRLSAATQD------LPKSVICNV-HGV-NPKFLQIGE-------KVATDREQG-QQAFS-KGAYFLGKMVWA-KGYREL 381 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi-nGV-d~~~f~~~~-------~~~~~~~~~-~~~~~-~~il~vGrl~~~-Kg~~~L 381 (612)
+++|+..++ ++++++.++ ||+ |...+.+.. ....+.+++ +++++ .+++++||+.+. ||++.+
T Consensus 146 i~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~l 225 (384)
T 1vgv_A 146 FSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEI 225 (384)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHH
T ss_pred EcCcHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHH
Confidence 999997655 334567777 774 422221110 012334455 53333 467899999876 999999
Q ss_pred HHHHHHhhccCCCeEEEEE-ecCC-CHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHH
Q 007215 382 IDLLAKHKNDLDGFKLDVF-GNGE-DAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALA 457 (612)
Q Consensus 382 i~A~~~l~~~~~~~~LvIv-G~g~-~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA 457 (612)
++|+.++.++.|+++++++ |.++ ..+.+++++... .+|.|+|.....+ ++|+.||++|.|| |.+++||||
T Consensus 226 i~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a 299 (384)
T 1vgv_A 226 CHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHV-KNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPS 299 (384)
T ss_dssp HHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGG
T ss_pred HHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcC-CCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHH
Confidence 9999999887889998886 4332 234455544321 2499987665444 9999999999999 334899999
Q ss_pred cCCcEEeeCC-CCccccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCCHHH------HhcCCHHHHHHHHHHHHh
Q 007215 458 MGKFVICADH-PSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLTPEQ------RYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 458 ~G~PVVas~~-gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~~~~------~~~~sWe~~~~~~~~~y~ 525 (612)
||+|||+++. |+.++++...+|+++ .|+++++++|.+++++ ++.++++. ...++|+++++.+.+.|+
T Consensus 300 ~G~PvI~~~~~~~~~e~v~~g~g~lv~~d~~~la~~i~~ll~d-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (384)
T 1vgv_A 300 LGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKD-ENEYQAMSRAHNPYGDGQACSRILEALKNNRI 374 (384)
T ss_dssp GTCCEEEESSCCSCHHHHHHTSEEEECSSHHHHHHHHHHHHHC-HHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCC
T ss_pred cCCCEEEccCCCCcchhhhCCceEEeCCCHHHHHHHHHHHHhC-hHHHhhhhhccCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999986 776655553489988 7999999999999964 33222221 246899999999999888
No 24
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.89 E-value=1.5e-23 Score=196.07 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=122.1
Q ss_pred CcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEE
Q 007215 363 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFI 440 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V 440 (612)
+++++|+||+.+.||++.+++|+..+++ .++++|+|+|.|++.+.++++++++++.+.| |.+++.+ ++++.||++|
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v 79 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKY-KQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYV 79 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTT-GGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhcc-CCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEE
Confidence 4689999999999999999999999854 4899999999999999999999999988888 9888655 9999999999
Q ss_pred eccCCCcchHHHHHHHHcCC-cEEee-CCCCccccccC-CcEEecCCHHHHHHHHHHHHhCCCCCCCHH------HHhcC
Q 007215 441 NPSISDVLCTATAEALAMGK-FVICA-DHPSNEFFRSF-PNCLTYKTSEDFVARVKEALANDPQPLTPE------QRYNL 511 (612)
Q Consensus 441 ~PS~~E~fgl~llEAMA~G~-PVVas-~~gg~~~i~~~-~~g~l~~d~~~la~aI~~ll~~~~~~~~~~------~~~~~ 511 (612)
+||..|+||++++||||||+ |||++ +.|+.+++... .+.+..+|+++++++|.+++++ ++.+.++ ..+.|
T Consensus 80 ~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 80 HAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLEN-KLERERMQNEYAKSALNY 158 (166)
T ss_dssp ECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGGEECTTCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred ECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCceEEcCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHC
Confidence 99999999999999999998 99995 56776666554 4433339999999999999964 4333322 22456
Q ss_pred CHHHHHH
Q 007215 512 SWEAATQ 518 (612)
Q Consensus 512 sWe~~~~ 518 (612)
+|+.+++
T Consensus 159 s~~~~~~ 165 (166)
T 3qhp_A 159 TLENSVI 165 (166)
T ss_dssp C------
T ss_pred Chhhhhc
Confidence 7766554
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.87 E-value=2e-22 Score=213.50 Aligned_cols=268 Identities=10% Similarity=-0.057 Sum_probs=172.7
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.+.+.+||+||++.+....+.. ...++..+ |++. +|+....+. ....+.. ....+++ ...+|.+
T Consensus 81 ~~l~~~l~~~~pDvv~~~~~~~~~~~~--~~~a~~~~ip~v~-~~~~~~~~~---~~~~~~~---~~~~~~~-~~~~~~~ 150 (376)
T 1v4v_A 81 PQAARALKEMGADYVLVHGDTLTTFAV--AWAAFLEGIPVGH-VEAGLRSGN---LKEPFPE---EANRRLT-DVLTDLD 150 (376)
T ss_dssp HHHHHHHHHTTCSEEEEESSCHHHHHH--HHHHHHTTCCEEE-ETCCCCCSC---TTSSTTH---HHHHHHH-HHHCSEE
T ss_pred HHHHHHHHHcCCCEEEEeCChHHHHHH--HHHHHHhCCCEEE-EeCCCcccc---ccCCCch---HHHHHHH-HHHhcee
Confidence 346667778899999998664444432 34455667 8763 443321110 0000111 1122232 2268999
Q ss_pred EEeChhhhc------cCCCcEEEe-CC-CCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhcc
Q 007215 320 LRLSAATQD------LPKSVICNV-HG-VNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND 391 (612)
Q Consensus 320 I~~S~~~~~------~~~~~i~vi-nG-Vd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~ 391 (612)
+++|+..++ ++++++.++ |+ +|...+.+. ....+.++ ++.+.+++++||+...||++.+++|++++.++
T Consensus 151 ~~~s~~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~~~-~~~~~~~~--~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~ 227 (376)
T 1v4v_A 151 FAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAK-LGRLPEGL--PEGPYVTVTMHRRENWPLLSDLAQALKRVAEA 227 (376)
T ss_dssp EESSHHHHHHHHTTTCCGGGEEECCCHHHHHHHHHHH-HCCCCTTC--CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHcCCCcceEEEECCchHHHHhhhhh-hhHHHHhc--CCCCEEEEEeCcccchHHHHHHHHHHHHHHhh
Confidence 999997654 334567777 54 442211110 11111222 22334667899998888999999999999887
Q ss_pred CCCeEEEEE-ecCC-CHHHHHHHHHHcCCceEEecCCCCH--HHHHhccceEEeccCCCcchHHHHHHHHcCCcEEee-C
Q 007215 392 LDGFKLDVF-GNGE-DAYEVQSAAKRLDLNLNFQKGRDHA--DDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA-D 466 (612)
Q Consensus 392 ~~~~~LvIv-G~g~-~~~~l~~~~~~l~l~v~f~g~~~~~--~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas-~ 466 (612)
.|+++++++ |.++ ..+.+++++.. ..+|.|+|.+... .++|+.||++|.|| + |+ ++||||||+|||++ +
T Consensus 228 ~~~~~lv~~~g~~~~~~~~l~~~~~~-~~~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~ 301 (376)
T 1v4v_A 228 FPHLTFVYPVHLNPVVREAVFPVLKG-VRNFVLLDPLEYGSMAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRN 301 (376)
T ss_dssp CTTSEEEEECCSCHHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSS
T ss_pred CCCeEEEEECCCCHHHHHHHHHHhcc-CCCEEEECCCCHHHHHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccC
Confidence 788988886 6554 24556665542 2259999765544 49999999999998 2 44 88999999999998 4
Q ss_pred CCCccccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCCHHHH--hcCCHHHHHHHHHHHHhccccc
Q 007215 467 HPSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLTPEQR--YNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 467 ~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~~~~~--~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
.++.+++++..+|+++ .|+++|+++|.++++ +++.++++.+ ..|.|...++++.+.+. +.+
T Consensus 302 ~~~~~~~~~~g~g~lv~~d~~~la~~i~~ll~-d~~~~~~~~~~~~~~~~~~~~~~i~~~i~--~~~ 365 (376)
T 1v4v_A 302 VTERPEGLKAGILKLAGTDPEGVYRVVKGLLE-NPEELSRMRKAKNPYGDGKAGLMVARGVA--WRL 365 (376)
T ss_dssp SCSCHHHHHHTSEEECCSCHHHHHHHHHHHHT-CHHHHHHHHHSCCSSCCSCHHHHHHHHHH--HHT
T ss_pred CCcchhhhcCCceEECCCCHHHHHHHHHHHHh-ChHhhhhhcccCCCCCCChHHHHHHHHHH--HHh
Confidence 6776666666688888 899999999999994 5544444443 34566667777777776 544
No 26
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.86 E-value=1e-21 Score=186.42 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=123.3
Q ss_pred hccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHH--HcCC--ceEEecCCCCHH--
Q 007215 357 QGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAK--RLDL--NLNFQKGRDHAD-- 430 (612)
Q Consensus 357 ~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~--~l~l--~v~f~g~~~~~~-- 430 (612)
+.++.++++++|+|++.+.||++.+++|++++ ++++|+|+|.+++.+.++++++ ++++ +|.|+|.+++.+
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~ 92 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELI 92 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHH
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHH
Confidence 34456678999999999999999999999988 5799999999998878888887 6666 499999999865
Q ss_pred HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc-cccCCcEEec-CCHHHHHHHHHHHHhCCC
Q 007215 431 DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEF-FRSFPNCLTY-KTSEDFVARVKEALANDP 500 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~-i~~~~~g~l~-~d~~~la~aI~~ll~~~~ 500 (612)
++++.||++|+||..|+||++++||||||+|||+++.|+..+ +.++.+|+++ .|+++++++|.++++++.
T Consensus 93 ~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 93 DLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp HHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTT
T ss_pred HHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCHH
Confidence 999999999999999999999999999999999999998554 4557889887 999999999999996654
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.85 E-value=3.4e-20 Score=197.40 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=158.7
Q ss_pred HhHhhhccCCCccEEEECCCchh-HHhhhhHHHhhhCCCEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHL-NWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l-~~~~~~~~~~~~~~pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+++.+.+||+||+...... ..+. ...+ |++.+.+.... . . +.+++.+ .+|.+
T Consensus 101 ~~l~~~l~~~~pDiv~~~~~~~~~~~~~----~~~~--p~~~~~~~~~~--------~---~-----~~~~~~~-~~d~i 157 (374)
T 2xci_A 101 FSVKRFEELSKPKALIVVEREFWPSLII----FTKV--PKILVNAYAKG--------S---L-----IEKILSK-KFDLI 157 (374)
T ss_dssp HHHHHHHHHHCCSEEEEESCCCCHHHHH----HCCS--CEEEEEECCCC--------C---H-----HHHHHHT-TCSEE
T ss_pred HHHHHHHHHhCCCEEEEECccCcHHHHH----HHhC--CEEEEEeecCc--------h---H-----HHHHHHH-hCCEE
Confidence 45677777889999998543322 2121 1112 66554443211 0 0 2233333 58999
Q ss_pred EEeChhhhc----cCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCC
Q 007215 320 LRLSAATQD----LPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG 394 (612)
Q Consensus 320 I~~S~~~~~----~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~ 394 (612)
++.|+..++ +.-.++.++ |+. |.+.... ...+ ..+++++.|+ ..||++.|++|++++.++.|+
T Consensus 158 i~~S~~~~~~l~~~g~~ki~vi~n~~----f~~~~~~--~~~l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~ 225 (374)
T 2xci_A 158 IMRTQEDVEKFKTFGAKRVFSCGNLK----FICQKGK--GIKL----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSS 225 (374)
T ss_dssp EESCHHHHHHHHTTTCCSEEECCCGG----GCCCCCS--CCCC----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTT
T ss_pred EECCHHHHHHHHHcCCCeEEEcCCCc----cCCCcCh--hhhh----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCC
Confidence 999997765 211267777 552 1111000 1111 1256666665 578999999999999988899
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCc----------eEEecCCCCHHHHHhccceEEeccCC-CcchHHHHHHHHcCCcE
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLN----------LNFQKGRDHADDSLHGYKVFINPSIS-DVLCTATAEALAMGKFV 462 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~----------v~f~g~~~~~~~ll~~aDv~V~PS~~-E~fgl~llEAMA~G~PV 462 (612)
++|+|+|.|+.. ++++++++++++. +.+.|...+..++|+.||++++||.. |++|++++||||||+||
T Consensus 226 ~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PV 305 (374)
T 2xci_A 226 LKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPV 305 (374)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCE
T ss_pred cEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCE
Confidence 999999999876 5899999988864 55666678888999999998888654 77899999999999999
Q ss_pred Eee-CCCCcccccc--CCcEEec--CCHHHHHHHHHHHHhCCCCCCCHHHHhcC
Q 007215 463 ICA-DHPSNEFFRS--FPNCLTY--KTSEDFVARVKEALANDPQPLTPEQRYNL 511 (612)
Q Consensus 463 Vas-~~gg~~~i~~--~~~g~l~--~d~~~la~aI~~ll~~~~~~~~~~~~~~~ 511 (612)
|++ +.++..++.. ..+|+++ +|+++|+++|.+++++ +.+++++++.+
T Consensus 306 I~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d--~~r~~mg~~ar 357 (374)
T 2xci_A 306 IYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV--KKEIKVEEKSR 357 (374)
T ss_dssp EECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS--CCCCCHHHHHH
T ss_pred EECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH--HHHHHHHHHHH
Confidence 986 6677555432 1234433 8999999999999965 56666666543
No 28
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.85 E-value=1.8e-20 Score=204.04 Aligned_cols=261 Identities=12% Similarity=0.037 Sum_probs=176.1
Q ss_pred CCccEEEECCCchhHHhhhhHHHhhhC-C-CEEEEEeCCcHhHHHHhccch-hHHHHHHHHHHHHHHhcCCeEEEeChhh
Q 007215 250 KDADIAILEEPEHLNWYHHGKRWTDKF-N-HVVGVVHTNYLEYIKREKNGA-LQAFFVKHINNWVTRAYCDKVLRLSAAT 326 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~~~~~~~~~~~~~-~-pvv~~~H~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~ad~vI~~S~~~ 326 (612)
..-|+|.+|++..+.... ...++. + ++.+++|+.++...-....+. +...+++.+ ..||.|..-+...
T Consensus 148 ~~~D~VwVhDYhL~llp~---~lR~~~~~~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gl------l~~DligF~t~~y 218 (496)
T 3t5t_A 148 SADPVYLVHDYQLVGVPA---LLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGM------LPATTIGFFADRW 218 (496)
T ss_dssp CSSCEEEEESGGGTTHHH---HHHHHCTTSCEEEECCSCCCCHHHHTTSCHHHHHHHHHHH------TTSSEEEESSHHH
T ss_pred CCCCEEEEeCccHhHHHH---HHHhhCCCCeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHH------HhCCEEEEecHHH
Confidence 357999999987654443 222322 3 899999999875542211111 112222111 1257777777632
Q ss_pred h-c--------c-C-------------C--CcEEEe-CCCCCCCCCCCcc---chhhhhhccCCCCcEEEEEeccCCccC
Q 007215 327 Q-D--------L-P-------------K--SVICNV-HGVNPKFLQIGEK---VATDREQGQQAFSKGAYFLGKMVWAKG 377 (612)
Q Consensus 327 ~-~--------~-~-------------~--~~i~vi-nGVd~~~f~~~~~---~~~~~~~~~~~~~~~il~vGrl~~~Kg 377 (612)
. . + . . .++.++ +|||++.|.+... ...+++++ ++++|+++||+++.||
T Consensus 219 ~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KG 295 (496)
T 3t5t_A 219 CRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD---GHRLVVHSGRTDPIKN 295 (496)
T ss_dssp HHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT---TSEEEEEEEESSGGGC
T ss_pred HHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC---CceEEEEcccCccccC
Confidence 2 1 1 0 0 245556 6999988866532 34455553 5789999999999999
Q ss_pred HHHHHHHHHHhhccCCC---eEEEEEecC-----CCH----HHHHHHHHHcC----C-ceEEecCCCCHH--HHHhccce
Q 007215 378 YRELIDLLAKHKNDLDG---FKLDVFGNG-----EDA----YEVQSAAKRLD----L-NLNFQKGRDHAD--DSLHGYKV 438 (612)
Q Consensus 378 ~~~Li~A~~~l~~~~~~---~~LvIvG~g-----~~~----~~l~~~~~~l~----l-~v~f~g~~~~~~--~ll~~aDv 438 (612)
++.+|+|+ ++.+++|+ +.|+++|.. +.. +++++++.+.+ . .|.|+|.++..+ .+|+.||+
T Consensus 296 i~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv 374 (496)
T 3t5t_A 296 AERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADL 374 (496)
T ss_dssp HHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSE
T ss_pred HHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccE
Confidence 99999999 88877775 568888742 222 33444544433 2 588999877666 99999999
Q ss_pred EEeccCCCcchHHHHHHHHcC---CcEEeeCCCCc-cccccCCcEEec--CCHHHHHHHHHHHHhCCCCCCC------HH
Q 007215 439 FINPSISDVLCTATAEALAMG---KFVICADHPSN-EFFRSFPNCLTY--KTSEDFVARVKEALANDPQPLT------PE 506 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G---~PVVas~~gg~-~~i~~~~~g~l~--~d~~~la~aI~~ll~~~~~~~~------~~ 506 (612)
||+||..||||++++|||||| .|+|+|+.+|. +++ +.+|+++ .|++++|++|.++|+++++.++ ..
T Consensus 375 ~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~ 452 (496)
T 3t5t_A 375 LIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVL--GEYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRD 452 (496)
T ss_dssp EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH--GGGSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred EEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh--CCCEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999997 89999998874 444 2367877 8999999999999976654332 22
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007215 507 QRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 507 ~~~~~sWe~~~~~~~~~y~ 525 (612)
....++++.-++.|++..+
T Consensus 453 ~V~~~d~~~W~~~fl~~L~ 471 (496)
T 3t5t_A 453 AARPWTLEAWVQAQLDGLA 471 (496)
T ss_dssp HHTTCBHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHh
Confidence 2345677777787777665
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.70 E-value=1.7e-16 Score=169.67 Aligned_cols=257 Identities=9% Similarity=-0.026 Sum_probs=156.7
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHH------
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTR------ 313 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------ 313 (612)
..+.+.+.+.+||+|+++..... +...+++.+ |++.+.|+...... ....+.+.+.++..+
T Consensus 120 ~~l~~~l~~~~pDvVv~~~~~~~-----~~~aa~~~giP~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~ 187 (412)
T 3otg_A 120 DELQPVIERLRPDLVVQEISNYG-----AGLAALKAGIPTICHGVGRDTPDD-------LTRSIEEEVRGLAQRLGLDLP 187 (412)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHH-----HHHHHHHHTCCEEEECCSCCCCSH-------HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCEEEECchhhH-----HHHHHHHcCCCEEEecccccCchh-------hhHHHHHHHHHHHHHcCCCCC
Confidence 44566667789999998743322 134455667 99888777542111 112233334443333
Q ss_pred -----hcCCeEEEeChhhhccCCCcEEEe-CCCCCCCCCCCccchhhhhh--ccCCC-CcEEEEEeccCCccCHHHHHHH
Q 007215 314 -----AYCDKVLRLSAATQDLPKSVICNV-HGVNPKFLQIGEKVATDREQ--GQQAF-SKGAYFLGKMVWAKGYRELIDL 384 (612)
Q Consensus 314 -----~~ad~vI~~S~~~~~~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~--~~~~~-~~~il~vGrl~~~Kg~~~Li~A 384 (612)
..+|.+++.+....+...+++... +.+........ .. ...+ ...++ ..++++.|++. .|+.+.+.++
T Consensus 188 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~ 263 (412)
T 3otg_A 188 PGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFAEQ--GD-LPAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAA 263 (412)
T ss_dssp SSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCCCCC--CC-CCGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHH
T ss_pred cccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCCCCC--CC-CCCccccccCCCCEEEEEcCCCC-cCcHHHHHHH
Confidence 246778888875544322110000 01111111100 00 1111 11233 34557788886 7788888887
Q ss_pred HHHhhccCCCeEEEEEecCCC-HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEE
Q 007215 385 LAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVI 463 (612)
Q Consensus 385 ~~~l~~~~~~~~LvIvG~g~~-~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVV 463 (612)
++.+.+. +.++++++++.. .+.++ ++.-++.|.|++ +..++++.||+||.+| .+.+++|||+||+|+|
T Consensus 264 ~~~l~~~--~~~~~~~~g~~~~~~~l~----~~~~~v~~~~~~-~~~~~l~~ad~~v~~~----g~~t~~Ea~a~G~P~v 332 (412)
T 3otg_A 264 IDGLAGL--DADVLVASGPSLDVSGLG----EVPANVRLESWV-PQAALLPHVDLVVHHG----GSGTTLGALGAGVPQL 332 (412)
T ss_dssp HHHHHTS--SSEEEEECCSSCCCTTCC----CCCTTEEEESCC-CHHHHGGGCSEEEESC----CHHHHHHHHHHTCCEE
T ss_pred HHHHHcC--CCEEEEEECCCCChhhhc----cCCCcEEEeCCC-CHHHHHhcCcEEEECC----chHHHHHHHHhCCCEE
Confidence 7777653 566666655443 33322 223349999999 6779999999999775 4589999999999999
Q ss_pred eeCCCC-----ccccccCCcEEec--C--CHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHHHHHh
Q 007215 464 CADHPS-----NEFFRSFPNCLTY--K--TSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 464 as~~gg-----~~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+++.++ .+.+.+...|.++ + |+++|+++|.++++++ +.++ +.....++|+++++.+.+.+.
T Consensus 333 ~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 333 SFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEE-SYRAGARAVAAEIAAMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp ECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC
T ss_pred ecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 987764 2355566778877 3 8999999999999653 3222 223456789999988888876
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.70 E-value=2.3e-17 Score=176.79 Aligned_cols=265 Identities=11% Similarity=0.031 Sum_probs=162.9
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCe
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~ 318 (612)
+..+.+.+.+.+||+||++......+.. ...+++.+ |++.+.+.. ..+.. ...+.. .+.+.+....+|.
T Consensus 100 ~~~l~~~l~~~kPDvVi~~g~~~~~~~~--~~aa~~~~IPv~h~~ag~-rs~~~---~~~~~~----~~~r~~~~~~a~~ 169 (396)
T 3dzc_A 100 LLGMQQVLSSEQPDVVLVHGDTATTFAA--SLAAYYQQIPVGHVEAGL-RTGNI---YSPWPE----EGNRKLTAALTQY 169 (396)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSHHHHHH--HHHHHTTTCCEEEETCCC-CCSCT---TSSTTH----HHHHHHHHHTCSE
T ss_pred HHHHHHHHHhcCCCEEEEECCchhHHHH--HHHHHHhCCCEEEEECCc-ccccc---ccCCcH----HHHHHHHHHhcCE
Confidence 4556777778999999997765554443 34556667 865432221 00100 001111 2233333336899
Q ss_pred EEEeChhhhc------cCCCcEEEe-C-CCCCCCCCCCc-------cchhhhhhc-cCCCCcEEE-EEecc-CCccCHHH
Q 007215 319 VLRLSAATQD------LPKSVICNV-H-GVNPKFLQIGE-------KVATDREQG-QQAFSKGAY-FLGKM-VWAKGYRE 380 (612)
Q Consensus 319 vI~~S~~~~~------~~~~~i~vi-n-GVd~~~f~~~~-------~~~~~~~~~-~~~~~~~il-~vGrl-~~~Kg~~~ 380 (612)
+++.|+..++ ++++++.++ | ++|...+.+.. ....+++++ +++++++++ +.+|. ...|+++.
T Consensus 170 ~~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ 249 (396)
T 3dzc_A 170 HFAPTDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFER 249 (396)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHH
T ss_pred EECCCHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHH
Confidence 9999997544 345678777 4 55532222111 133455666 344455555 44454 34588999
Q ss_pred HHHHHHHhhccCCCeEEEEE-ecCCCHHHHHHHHHH-cC--CceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHH
Q 007215 381 LIDLLAKHKNDLDGFKLDVF-GNGEDAYEVQSAAKR-LD--LNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAE 454 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIv-G~g~~~~~l~~~~~~-l~--l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llE 454 (612)
+++|++++.++.|++++++. |.++ .+++.+++ .+ .++.+++.....+ .+++.||++|.+| | |+ .+|
T Consensus 250 ll~A~~~l~~~~~~~~~v~~~g~~~---~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G-g~-~~E 321 (396)
T 3dzc_A 250 ICQALITTAEQHPECQILYPVHLNP---NVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G-GI-QEE 321 (396)
T ss_dssp HHHHHHHHHHHCTTEEEEEECCBCH---HHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSEEEESC---S-GG-GTT
T ss_pred HHHHHHHHHHhCCCceEEEEeCCCh---HHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c-cH-HHH
Confidence 99999999888889988886 5442 22333332 22 2488888876444 9999999999998 3 43 389
Q ss_pred HHHcCCcEEee-CCCCccccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCCHHHHh--cCCHHHHHHHHHHH
Q 007215 455 ALAMGKFVICA-DHPSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLTPEQRY--NLSWEAATQRFIEY 523 (612)
Q Consensus 455 AMA~G~PVVas-~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~~~~~~--~~sWe~~~~~~~~~ 523 (612)
||+||+|||++ +.++.++++....++++ .|+++++++|.+++++ ++.++++... .|....++++..+.
T Consensus 322 A~a~G~PvV~~~~~~~~~e~v~~G~~~lv~~d~~~l~~ai~~ll~d-~~~~~~m~~~~~~~~~~~aa~ri~~~ 393 (396)
T 3dzc_A 322 APSLGKPVLVMRETTERPEAVAAGTVKLVGTNQQQICDALSLLLTD-PQAYQAMSQAHNPYGDGKACQRIADI 393 (396)
T ss_dssp GGGGTCCEEECCSSCSCHHHHHHTSEEECTTCHHHHHHHHHHHHHC-HHHHHHHHTSCCTTCCSCHHHHHHHH
T ss_pred HHHcCCCEEEccCCCcchHHHHcCceEEcCCCHHHHHHHHHHHHcC-HHHHHHHhhccCCCcCChHHHHHHHH
Confidence 99999999999 67775555554456777 6899999999999954 4433333332 23333344554443
No 31
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.65 E-value=3.5e-16 Score=163.80 Aligned_cols=211 Identities=13% Similarity=0.021 Sum_probs=141.9
Q ss_pred CCccEEEECCCchhH--HhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeEEEeChhh
Q 007215 250 KDADIAILEEPEHLN--WYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAAT 326 (612)
Q Consensus 250 ~~pDVVh~~~p~~l~--~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~vI~~S~~~ 326 (612)
.++|+|+++.|.... +...-..+.++.+ |++..+|+.++..... . ......++++.+ .||.||+.|+.+
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~~---~----~~~~~~E~~~y~-~aD~Ii~~S~~~ 144 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSG---N----FYLMDRTIAYYN-KADVVVAPSQKM 144 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCGG---G----GGGHHHHHHHHT-TCSEEEESCHHH
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCcc---c----hhhHHHHHHHHH-HCCEEEECCHHH
Confidence 569999998887422 2111233444457 9999999997644311 1 112225666666 799999999987
Q ss_pred hc------cCCCcEEEeCCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEE
Q 007215 327 QD------LPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVF 400 (612)
Q Consensus 327 ~~------~~~~~i~vinGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIv 400 (612)
++ .+..++.+.+-.|.. .+.. . ..+..++.++|+|++.....+ ..+ .++++|+|+
T Consensus 145 ~~~l~~~G~~~~ki~~~~~~~~~--~~~~---~----~~~~~~~~i~yaG~l~k~~~L-------~~l---~~~~~f~iv 205 (339)
T 3rhz_A 145 IDKLRDFGMNVSKTVVQGMWDHP--TQAP---M----FPAGLKREIHFPGNPERFSFV-------KEW---KYDIPLKVY 205 (339)
T ss_dssp HHHHHHTTCCCSEEEECCSCCCC--CCCC---C----CCCEEEEEEEECSCTTTCGGG-------GGC---CCSSCEEEE
T ss_pred HHHHHHcCCCcCceeecCCCCcc--Cccc---c----cccCCCcEEEEeCCcchhhHH-------HhC---CCCCeEEEE
Confidence 76 222444333322211 1100 0 112235789999999853222 222 368999999
Q ss_pred ecCCCHHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccC-------CCcchHHHHHHHHcCCcEEeeCCCCcc
Q 007215 401 GNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSI-------SDVLCTATAEALAMGKFVICADHPSNE 471 (612)
Q Consensus 401 G~g~~~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~-------~E~fgl~llEAMA~G~PVVas~~gg~~ 471 (612)
|+|++. +++ +|.|+|.++..+ ++++.+|+.+.... ...+|.+++||||||+|||+++.++..
T Consensus 206 G~G~~~--------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~ 276 (339)
T 3rhz_A 206 TWQNVE--------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQ 276 (339)
T ss_dssp ESCCCC--------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTT
T ss_pred eCCccc--------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHH
Confidence 999975 244 699999999888 78877887776511 024589999999999999999998854
Q ss_pred -ccccCCcEEecCCHHHHHHHHHHHH
Q 007215 472 -FFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 472 -~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
.+.++.+|+++.+.++++++|.++.
T Consensus 277 ~~v~~~~~G~~~~~~~e~~~~i~~l~ 302 (339)
T 3rhz_A 277 ELIENNGLGWIVKDVEEAIMKVKNVN 302 (339)
T ss_dssp HHHHHHTCEEEESSHHHHHHHHHHCC
T ss_pred HHHHhCCeEEEeCCHHHHHHHHHHhC
Confidence 5566788999999999999998764
No 32
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.61 E-value=9.8e-15 Score=154.60 Aligned_cols=236 Identities=10% Similarity=-0.030 Sum_probs=149.8
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
....+.+++.+||+|+....+... . ....++..+ |++..-.+..+. ..++++.+ +++.+
T Consensus 82 ~~~~~~l~~~~PDvVi~~g~~~s~-p--~~laA~~~~iP~vihe~n~~~G----------------~~nr~l~~-~a~~v 141 (365)
T 3s2u_A 82 FQALRVIRQLRPVCVLGLGGYVTG-P--GGLAARLNGVPLVIHEQNAVAG----------------TANRSLAP-IARRV 141 (365)
T ss_dssp HHHHHHHHHHCCSEEEECSSSTHH-H--HHHHHHHTTCCEEEEECSSSCC----------------HHHHHHGG-GCSEE
T ss_pred HHHHHHHHhcCCCEEEEcCCcchH-H--HHHHHHHcCCCEEEEecchhhh----------------hHHHhhcc-cccee
Confidence 345566778899999996554321 1 134455666 887433322211 12333333 68887
Q ss_pred EEeChhhhccCCCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEE-EEEeccCCccCHHHHHHHHHHhhccCCCeEE
Q 007215 320 LRLSAATQDLPKSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGA-YFLGKMVWAKGYRELIDLLAKHKNDLDGFKL 397 (612)
Q Consensus 320 I~~S~~~~~~~~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~i-l~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~L 397 (612)
....+..... .+++.++ |.+..+++.... .+.+..++++.+ ++.|+....+..+.++++++.+..+. +..+
T Consensus 142 ~~~~~~~~~~-~~k~~~~g~pvr~~~~~~~~-----~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~-~~~v 214 (365)
T 3s2u_A 142 CEAFPDTFPA-SDKRLTTGNPVRGELFLDAH-----ARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEI-RPAI 214 (365)
T ss_dssp EESSTTSSCC----CEECCCCCCGGGCCCTT-----SSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTT-CCEE
T ss_pred eecccccccC-cCcEEEECCCCchhhccchh-----hhcccCCCCcEEEEECCcCCccccchhhHHHHHhccccc-ceEE
Confidence 7766543222 2344444 677665544321 222333445555 45577888888888889998886543 4445
Q ss_pred EEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c------
Q 007215 398 DVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-N------ 470 (612)
Q Consensus 398 vIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~------ 470 (612)
+...+..+.+.+.+..++.+.++.+.+++++..++|+.||++|.-+ .++++.|+|++|+|+|..+.+. .
T Consensus 215 i~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~ 290 (365)
T 3s2u_A 215 RHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTR 290 (365)
T ss_dssp EEECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHH
T ss_pred EEecCccccccccceecccccccccccchhhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHH
Confidence 4444344556777778888888999999999999999999999643 4789999999999999887653 1
Q ss_pred --cccccCCcEEec----CCHHHHHHHHHHHHhCCCCCCCHHHH
Q 007215 471 --EFFRSFPNCLTY----KTSEDFVARVKEALANDPQPLTPEQR 508 (612)
Q Consensus 471 --~~i~~~~~g~l~----~d~~~la~aI~~ll~~~~~~~~~~~~ 508 (612)
+.+.+...|.++ .|+++|+++|.++++ +++++++|.+
T Consensus 291 NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~-d~~~~~~m~~ 333 (365)
T 3s2u_A 291 NAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLM-HPETLRSMAD 333 (365)
T ss_dssp HHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHH-CTHHHHHHHH
T ss_pred HHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHC-CHHHHHHHHH
Confidence 235555566666 368999999999995 4555554443
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.60 E-value=1.3e-15 Score=163.48 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=153.6
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCe
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~ 318 (612)
+..+.+.+.+.+||+|+++......+.. ...+++.+ |++. ++.....+. .+ .++... +.+.+....+|.
T Consensus 103 ~~~l~~~l~~~kPD~Vi~~gd~~~~l~~--~laA~~~~IPv~h-~~aglrs~~-~~--~~~p~~----~~r~~~~~~a~~ 172 (403)
T 3ot5_A 103 MNGINEVIAAENPDIVLVHGDTTTSFAA--GLATFYQQKMLGH-VEAGLRTWN-KY--SPFPEE----MNRQLTGVMADI 172 (403)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHHH--HHHHHHTTCEEEE-ESCCCCCSC-TT--SSTTHH----HHHHHHHHHCSE
T ss_pred HHHHHHHHHHcCCCEEEEECCchhHHHH--HHHHHHhCCCEEE-EECCccccc-cc--cCCcHH----HHHHHHHHhcCE
Confidence 3556777778999999997765444443 34556667 7643 332110000 00 001111 222222336899
Q ss_pred EEEeChhhhc------cCCCcEEEe-C-CCCCCCCCCCc--cchhhhhhccCCCCcEEEEEeccCC-ccCHHHHHHHHHH
Q 007215 319 VLRLSAATQD------LPKSVICNV-H-GVNPKFLQIGE--KVATDREQGQQAFSKGAYFLGKMVW-AKGYRELIDLLAK 387 (612)
Q Consensus 319 vI~~S~~~~~------~~~~~i~vi-n-GVd~~~f~~~~--~~~~~~~~~~~~~~~~il~vGrl~~-~Kg~~~Li~A~~~ 387 (612)
+++.|+..++ ++++++.++ | ++|...+.+.. ....++++ ++.+.++++.||... .|+++.+++|+.+
T Consensus 173 ~~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l--~~~~~vlv~~~r~~~~~~~l~~ll~a~~~ 250 (403)
T 3ot5_A 173 HFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL--GDNRLILMTAHRRENLGEPMQGMFEAVRE 250 (403)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC--TTCEEEEECCCCHHHHTTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc--cCCCEEEEEeCcccccCcHHHHHHHHHHH
Confidence 9999997654 445678887 4 66633222211 12233333 222334456666533 4789999999999
Q ss_pred hhccCCCeEEEEEecCCCHHHHHHHHHH-cC--CceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcE
Q 007215 388 HKNDLDGFKLDVFGNGEDAYEVQSAAKR-LD--LNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFV 462 (612)
Q Consensus 388 l~~~~~~~~LvIvG~g~~~~~l~~~~~~-l~--l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PV 462 (612)
+.++.|++++++.+. +.. .+++.+++ ++ -++.+++.....+ .+++.||++|.+| |...+|||+||+|+
T Consensus 251 l~~~~~~~~~v~~~~-~~~-~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~Pv 323 (403)
T 3ot5_A 251 IVESREDTELVYPMH-LNP-AVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPV 323 (403)
T ss_dssp HHHHCTTEEEEEECC-SCH-HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCE
T ss_pred HHHhCCCceEEEecC-CCH-HHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCE
Confidence 988888998888742 221 22333332 22 2488999887444 9999999999887 44449999999999
Q ss_pred Eee-CCCCccccccCCcEEec-CCHHHHHHHHHHHHhCCCCCCCHH
Q 007215 463 ICA-DHPSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLTPE 506 (612)
Q Consensus 463 Vas-~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~~~~~~~~ 506 (612)
|++ +.++.++.+...+++++ .|+++++++|.+++.+ ++.++++
T Consensus 324 V~~~~~~~~~e~v~~g~~~lv~~d~~~l~~ai~~ll~~-~~~~~~m 368 (403)
T 3ot5_A 324 LVLRDTTERPEGIEAGTLKLIGTNKENLIKEALDLLDN-KESHDKM 368 (403)
T ss_dssp EECCSSCSCHHHHHHTSEEECCSCHHHHHHHHHHHHHC-HHHHHHH
T ss_pred EEecCCCcchhheeCCcEEEcCCCHHHHHHHHHHHHcC-HHHHHHH
Confidence 999 66776555665588888 6999999999999954 4333333
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.56 E-value=1.3e-13 Score=148.42 Aligned_cols=262 Identities=11% Similarity=0.057 Sum_probs=149.0
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCc--HhHHHHhccc--------hhHHHHHHHHHH
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNY--LEYIKREKNG--------ALQAFFVKHINN 309 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~--~~~~~~~~~~--------~~~~~~~~~i~~ 309 (612)
..+.+.+.+.+||+||++.... +. ...+++++ |++.+.++.. ..+......+ ....++...+.+
T Consensus 94 ~~l~~~l~~~~pD~Vi~d~~~~--~~---~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
T 2iyf_A 94 PQLADAYADDIPDLVLHDITSY--PA---RVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEA 168 (430)
T ss_dssp HHHHHHHTTSCCSEEEEETTCH--HH---HHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCEEEECCccH--HH---HHHHHHcCCCEEEEecccccccccccccccchhhhhccchHHHHHHHHHHH
Confidence 3455666678999999865432 22 34556667 9888876542 1111000000 001111223333
Q ss_pred HHHHh-----------cCCeEEEeChhhhccC----CCc-EEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEecc
Q 007215 310 WVTRA-----------YCDKVLRLSAATQDLP----KSV-ICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 372 (612)
Q Consensus 310 ~~~~~-----------~ad~vI~~S~~~~~~~----~~~-i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl 372 (612)
+..+. .+|.+++.+....+.. ..+ +..+ |+++..... ..... ..++...+++++|++
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~vG~~~~~~~~~----~~~~~--~~~~~~~v~v~~Gs~ 242 (430)
T 2iyf_A 169 WLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEE----GGWQR--PAGAEKVVLVSLGSA 242 (430)
T ss_dssp HHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGSCTTTEEECCCCC-----C----CCCCC--CTTCSEEEEEECTTT
T ss_pred HHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccCCCccEEEeCCcCCCCCCC----CCCcc--ccCCCCeEEEEcCCC
Confidence 33321 3688888876443321 123 5444 444321100 00000 011233567789998
Q ss_pred CCccCHHHHHHHHHHhhccCCCeEE-EEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHH
Q 007215 373 VWAKGYRELIDLLAKHKNDLDGFKL-DVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTA 451 (612)
Q Consensus 373 ~~~Kg~~~Li~A~~~l~~~~~~~~L-vIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~ 451 (612)
. .++.+.+.++++.+.+ .+++++ +++|.+++.+.++ ++..++.+.|++++. ++++.||+||..+ ..++
T Consensus 243 ~-~~~~~~~~~~~~~l~~-~~~~~~~~~~G~~~~~~~l~----~~~~~v~~~~~~~~~-~~l~~ad~~v~~~----G~~t 311 (430)
T 2iyf_A 243 F-TKQPAFYRECVRAFGN-LPGWHLVLQIGRKVTPAELG----ELPDNVEVHDWVPQL-AILRQADLFVTHA----GAGG 311 (430)
T ss_dssp C-C-CHHHHHHHHHHHTT-CTTEEEEEECC---CGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEECC----CHHH
T ss_pred C-CCcHHHHHHHHHHHhc-CCCeEEEEEeCCCCChHHhc----cCCCCeEEEecCCHH-HHhhccCEEEECC----CccH
Confidence 8 5555555444444433 246777 5788877654332 233359999998877 7999999999864 3479
Q ss_pred HHHHHHcCCcEEeeCCCC-----ccccccCCcEEec--C--CHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHH
Q 007215 452 TAEALAMGKFVICADHPS-----NEFFRSFPNCLTY--K--TSEDFVARVKEALANDPQPLT------PEQRYNLSWEAA 516 (612)
Q Consensus 452 llEAMA~G~PVVas~~gg-----~~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~ 516 (612)
++|||++|+|+|+++.++ .+.+.+...|+.+ + |+++++++|.+++++ ++.++ +......+++.+
T Consensus 312 ~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~ 390 (430)
T 2iyf_A 312 SQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDD-PEVARRLRRIQAEMAQEGGTRRA 390 (430)
T ss_dssp HHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHhcCcHHHH
Confidence 999999999999998765 2345556678877 3 899999999999964 33222 112234677777
Q ss_pred HHHHHHHHh
Q 007215 517 TQRFIEYSE 525 (612)
Q Consensus 517 ~~~~~~~y~ 525 (612)
++.+.+.++
T Consensus 391 ~~~i~~~~~ 399 (430)
T 2iyf_A 391 ADLIEAELP 399 (430)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHhh
Confidence 777766665
No 35
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.53 E-value=9.1e-14 Score=147.63 Aligned_cols=258 Identities=10% Similarity=-0.004 Sum_probs=147.9
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhc----
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAY---- 315 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 315 (612)
..+.+.+.+.+||+||+..+.. .. ...+++.+ |++.+.|+...... .........+.+++.+..
T Consensus 104 ~~l~~~l~~~~PD~Vv~~~~~~---~~--~~aa~~~giP~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 172 (391)
T 3tsa_A 104 PEYLRLAEAWRPSVLLVDVCAL---IG--RVLGGLLDLPVVLHRWGVDPTAG------PFSDRAHELLDPVCRHHGLTGL 172 (391)
T ss_dssp HHHHHHHHHHCCSEEEEETTCH---HH--HHHHHHTTCCEEEECCSCCCTTT------HHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHhcCCCEEEeCcchh---HH--HHHHHHhCCCEEEEecCCccccc------cccchHHHHHHHHHHHcCCCCC
Confidence 3456666778999999964332 22 34456677 98888776532211 011222233333333322
Q ss_pred --CCeEEEeChhhhccCCCcEEEeCCCCCCCCCCCccchhhhhhccCCCC-cEEEEEeccCCccCH-HHHHHHHHHhhcc
Q 007215 316 --CDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFS-KGAYFLGKMVWAKGY-RELIDLLAKHKND 391 (612)
Q Consensus 316 --ad~vI~~S~~~~~~~~~~i~vinGVd~~~f~~~~~~~~~~~~~~~~~~-~~il~vGrl~~~Kg~-~~Li~A~~~l~~~ 391 (612)
.+.++.......+...... +....+.+..............+++ .+++++|+....|+. ..+++++.+. ++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~ 247 (391)
T 3tsa_A 173 PTPELILDPCPPSLQASDAPQ----GAPVQYVPYNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-TE 247 (391)
T ss_dssp CCCSEEEECSCGGGSCTTSCC----CEECCCCCCCCCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HT
T ss_pred CCCceEEEecChhhcCCCCCc----cCCeeeecCCCCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-cc
Confidence 1555665553333222110 0000111000000111111112233 455667988765544 7777777776 66
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC--
Q 007215 392 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-- 469 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-- 469 (612)
.|+++++++|++.+.+.+. ....++++.++.+. .+++..||++|.. +.+.+++|||++|+|+|+....+
T Consensus 248 ~p~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~~~-~~ll~~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q 318 (391)
T 3tsa_A 248 LPGVEAVIAVPPEHRALLT----DLPDNARIAESVPL-NLFLRTCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQ 318 (391)
T ss_dssp STTEEEEEECCGGGGGGCT----TCCTTEEECCSCCG-GGTGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTH
T ss_pred CCCeEEEEEECCcchhhcc----cCCCCEEEeccCCH-HHHHhhCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccH
Confidence 7789999998876543332 23335888888754 4688999999954 55679999999999999976543
Q ss_pred ---ccccccCCcEEec-C-----CHHHHHHHHHHHHhCCCCCCC------HHHHhcCCHHHHHHHHHHHH
Q 007215 470 ---NEFFRSFPNCLTY-K-----TSEDFVARVKEALANDPQPLT------PEQRYNLSWEAATQRFIEYS 524 (612)
Q Consensus 470 ---~~~i~~~~~g~l~-~-----d~~~la~aI~~ll~~~~~~~~------~~~~~~~sWe~~~~~~~~~y 524 (612)
.+.+.+...|..+ . |+++++++|.++++ ++..++ +......+++++++.+.+..
T Consensus 319 ~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (391)
T 3tsa_A 319 FDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLG-DTGFAAAAIKLSDEITAMPHPAALVRTLENTA 387 (391)
T ss_dssp HHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHT-CTHHHHHHHHHHHHHHTSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2345556778877 3 58999999999995 443322 22234567777777665543
No 36
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.51 E-value=1.4e-13 Score=146.66 Aligned_cols=144 Identities=13% Similarity=0.005 Sum_probs=87.6
Q ss_pred CCcEEEEEeccCCcc----------CHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHH
Q 007215 362 FSKGAYFLGKMVWAK----------GYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADD 431 (612)
Q Consensus 362 ~~~~il~vGrl~~~K----------g~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ 431 (612)
...+++++|++...| .+..+++++.++ ++++++++++.+.+.+. ++.-++.+.+++ +..+
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~-~~~~ 296 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKLAQTLQ----PLPEGVLAAGQF-PLSA 296 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC------------CCTTEEEESCC-CHHH
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcchhhhc----cCCCcEEEeCcC-CHHH
Confidence 345667889986544 466777776554 57888888776544433 334459999987 4668
Q ss_pred HHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-----ccccccCCcEEec--C--CHHHHHHHHHHHHhCCCCC
Q 007215 432 SLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS-----NEFFRSFPNCLTY--K--TSEDFVARVKEALANDPQP 502 (612)
Q Consensus 432 ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-----~~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~ 502 (612)
++..||++|. ++.+.+++|||+||+|+|+.+.++ .+.+.+...|..+ + |+++++++|.+++++ +..
T Consensus 297 ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~-~~~ 371 (398)
T 4fzr_A 297 IMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDD-SSY 371 (398)
T ss_dssp HGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHC-THH
T ss_pred HHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC-HHH
Confidence 9999999995 455789999999999999976653 2345566778877 3 789999999999955 432
Q ss_pred CCH------HHHhcCCHHHHHHHH
Q 007215 503 LTP------EQRYNLSWEAATQRF 520 (612)
Q Consensus 503 ~~~------~~~~~~sWe~~~~~~ 520 (612)
+++ ......+|+++++.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l 395 (398)
T 4fzr_A 372 VGNARRLAAEMATLPTPADIVRLI 395 (398)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 222345666655543
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.42 E-value=6.7e-12 Score=133.21 Aligned_cols=260 Identities=9% Similarity=-0.001 Sum_probs=143.0
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhH--H------HHh-ccch-hHHHHHHHHHH
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEY--I------KRE-KNGA-LQAFFVKHINN 309 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~--~------~~~-~~~~-~~~~~~~~i~~ 309 (612)
..+.+.+.+.+||+||++++..+. . ...+++.+ |++.+.++..... . ... .... ........+.+
T Consensus 92 ~~l~~~l~~~~pD~Vi~d~~~~~~-~---~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (402)
T 3ia7_A 92 RAAEEALGDNPPDLVVYDVFPFIA-G---RLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPADVEAVHSVLVD 167 (402)
T ss_dssp HHHHHHHTTCCCSEEEEESTTHHH-H---HHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGGGSHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEECchHHHH-H---HHHHHhhCCCEEEEecccccCccccccccccccccccChhhHHHHHHHHHH
Confidence 345666778899999996433322 1 34556667 9988876543210 0 000 0000 11222233333
Q ss_pred HHHHhc------------CCeEEEeChhhhccC----CCcEEEe-CCCCCCCCCCCccchhhhhhccCCCCcEEEEEecc
Q 007215 310 WVTRAY------------CDKVLRLSAATQDLP----KSVICNV-HGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 372 (612)
Q Consensus 310 ~~~~~~------------ad~vI~~S~~~~~~~----~~~i~vi-nGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl 372 (612)
+..+.. +|..++......+.. ..++..+ +.++... ....... ..++...++++.|+.
T Consensus 168 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~~----~~~~~~~--~~~~~~~v~v~~G~~ 241 (402)
T 3ia7_A 168 LLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTLTGRD----GQPGWQP--PRPDAPVLLVSLGNQ 241 (402)
T ss_dssp HHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCCCCC--------CCCCC--SSTTCCEEEEECCSC
T ss_pred HHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCCeEEeCCCCCCcc----cCCCCcc--cCCCCCEEEEECCCC
Confidence 322211 156666655333321 2334444 3332110 0000000 012233466788988
Q ss_pred CCcc--CHHHHHHHHHHhhccCCCeEEEE-EecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcch
Q 007215 373 VWAK--GYRELIDLLAKHKNDLDGFKLDV-FGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLC 449 (612)
Q Consensus 373 ~~~K--g~~~Li~A~~~l~~~~~~~~LvI-vG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fg 449 (612)
...+ .+..+++++..+ + .++++ +|.+.+.+.+. ++.-++.+.++.++. ++++.||++|..+ ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~----~-~~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~~-~ll~~ad~~v~~~----G~ 307 (402)
T 3ia7_A 242 FNEHPEFFRACAQAFADT----P-WHVVMAIGGFLDPAVLG----PLPPNVEAHQWIPFH-SVLAHARACLTHG----TT 307 (402)
T ss_dssp SSCCHHHHHHHHHHHTTS----S-CEEEEECCTTSCGGGGC----SCCTTEEEESCCCHH-HHHTTEEEEEECC----CH
T ss_pred CcchHHHHHHHHHHHhcC----C-cEEEEEeCCcCChhhhC----CCCCcEEEecCCCHH-HHHhhCCEEEECC----CH
Confidence 7665 344444444332 3 55544 66655543332 233358999998887 8999999999775 34
Q ss_pred HHHHHHHHcCCcEEeeCC-CC-----ccccccCCcEEec--C--CHHHHHHHHHHHHhCCCCCCC------HHHHhcCCH
Q 007215 450 TATAEALAMGKFVICADH-PS-----NEFFRSFPNCLTY--K--TSEDFVARVKEALANDPQPLT------PEQRYNLSW 513 (612)
Q Consensus 450 l~llEAMA~G~PVVas~~-gg-----~~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~~~------~~~~~~~sW 513 (612)
.+++|||++|+|+|+... .+ .+.+.+...|..+ + |+++++++|.++++++ +.++ +......++
T Consensus 308 ~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~ 386 (402)
T 3ia7_A 308 GAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADS-AVRERVRRMQRDILSSGGP 386 (402)
T ss_dssp HHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHhhCChH
Confidence 788999999999997765 32 2344556677776 2 8999999999999653 2222 222344567
Q ss_pred HHHHHHHHHHHh
Q 007215 514 EAATQRFIEYSE 525 (612)
Q Consensus 514 e~~~~~~~~~y~ 525 (612)
+++++.+.+.+.
T Consensus 387 ~~~~~~i~~~~~ 398 (402)
T 3ia7_A 387 ARAADEVEAYLG 398 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777666654
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.39 E-value=1.1e-12 Score=139.85 Aligned_cols=146 Identities=12% Similarity=-0.012 Sum_probs=95.3
Q ss_pred CcEEEEEeccCCc-cCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEe
Q 007215 363 SKGAYFLGKMVWA-KGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFIN 441 (612)
Q Consensus 363 ~~~il~vGrl~~~-Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~ 441 (612)
..+++++|++... ++.+.+.++++.+.+. ++++++++++.+.+.+. .+.-++.+.+++ +..+++..||+||.
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~-~~~~ll~~ad~~v~ 305 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDISPLG----TLPRNVRAVGWT-PLHTLLRTCTAVVH 305 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCCGGGC----SCCTTEEEESSC-CHHHHHTTCSEEEE
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcChhhhc----cCCCcEEEEccC-CHHHHHhhCCEEEE
Confidence 3466778998554 3444444444444332 68899998877643332 233359999998 67789999999995
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeC----CCCc---cccccCCcEEec--C--CHHHHHHHHHHHHhCCCCCCC------
Q 007215 442 PSISDVLCTATAEALAMGKFVICAD----HPSN---EFFRSFPNCLTY--K--TSEDFVARVKEALANDPQPLT------ 504 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~----~gg~---~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~~~------ 504 (612)
. +.+.+++|||++|+|+|+.+ .+++ +.+.+...|+.+ . ++++++ +++++ +..++
T Consensus 306 ~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~-~~~~~~~~~~~ 376 (398)
T 3oti_A 306 H----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGD-ESLRTAAREVR 376 (398)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHC-HHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcC-HHHHHHHHHHH
Confidence 4 55679999999999999954 3443 445556677777 2 556665 67744 33222
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007215 505 PEQRYNLSWEAATQRFIEYS 524 (612)
Q Consensus 505 ~~~~~~~sWe~~~~~~~~~y 524 (612)
+......+|+.+++.+.+..
T Consensus 377 ~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 377 EEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp HHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHh
Confidence 23345578888887776654
No 39
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.38 E-value=7.6e-13 Score=141.01 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=149.8
Q ss_pred hHhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCe
Q 007215 240 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 318 (612)
Q Consensus 240 ~~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~ 318 (612)
+..+.+.+.+.+||+|+++......+.. ..+.+.+ |++ .++.....+ ...+. ..+.+.+....+|.
T Consensus 83 ~~~l~~~l~~~kPD~Vlv~gd~~~~~aa---laA~~~~IPv~-h~eaglrs~-----~~~~p----ee~nR~~~~~~a~~ 149 (385)
T 4hwg_A 83 IEKVDEVLEKEKPDAVLFYGDTNSCLSA---IAAKRRKIPIF-HMEAGNRCF-----DQRVP----EEINRKIIDHISDV 149 (385)
T ss_dssp HHHHHHHHHHHCCSEEEEESCSGGGGGH---HHHHHTTCCEE-EESCCCCCS-----CTTST----HHHHHHHHHHHCSE
T ss_pred HHHHHHHHHhcCCcEEEEECCchHHHHH---HHHHHhCCCEE-EEeCCCccc-----cccCc----HHHHHHHHHhhhce
Confidence 3456777778999999997654333322 4556667 864 333321000 00111 12233333336899
Q ss_pred EEEeChhhhc------cCCCcEEEe-C-CCCCCCCC--CCccchhhhhhccCCCCcEEEEEeccC---CccCHHHHHHHH
Q 007215 319 VLRLSAATQD------LPKSVICNV-H-GVNPKFLQ--IGEKVATDREQGQQAFSKGAYFLGKMV---WAKGYRELIDLL 385 (612)
Q Consensus 319 vI~~S~~~~~------~~~~~i~vi-n-GVd~~~f~--~~~~~~~~~~~~~~~~~~~il~vGrl~---~~Kg~~~Li~A~ 385 (612)
+++.|+..++ ++++++.++ | ++|.-.+. .......++++++++.+.++++.+|.. ..|+++.+++|+
T Consensus 150 ~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al 229 (385)
T 4hwg_A 150 NITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSL 229 (385)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHH
Confidence 9999997544 445678777 4 55532221 112344566777766444555666643 347899999999
Q ss_pred HHhhccCCCeEEEEEecCCCHHHHHHHHHHc-C-C----ceEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHH
Q 007215 386 AKHKNDLDGFKLDVFGNGEDAYEVQSAAKRL-D-L----NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALA 457 (612)
Q Consensus 386 ~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l-~-l----~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA 457 (612)
.++.++. ++.+++... ..+++.++++ + + ++.+++.....+ .+++.||++|.+| |....||++
T Consensus 230 ~~l~~~~-~~~vv~p~~----p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~a 299 (385)
T 4hwg_A 230 QMLIKEY-NFLIIFSTH----PRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITEEASI 299 (385)
T ss_dssp HHHHHHH-CCEEEEEEC----HHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHH
T ss_pred HHHHhcC-CeEEEEECC----hHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHH
Confidence 9987654 676666543 2355555554 3 2 388877776554 8999999999776 446799999
Q ss_pred cCCcEEeeCCCC-ccccccCCcEEec-CCHHHHHHHHHHHHhCC
Q 007215 458 MGKFVICADHPS-NEFFRSFPNCLTY-KTSEDFVARVKEALAND 499 (612)
Q Consensus 458 ~G~PVVas~~gg-~~~i~~~~~g~l~-~d~~~la~aI~~ll~~~ 499 (612)
+|+|+|+.+... ..+.+...++.++ .|++++++++.++++++
T Consensus 300 lG~Pvv~~~~~ter~e~v~~G~~~lv~~d~~~i~~ai~~ll~d~ 343 (385)
T 4hwg_A 300 LNLPALNIREAHERPEGMDAGTLIMSGFKAERVLQAVKTITEEH 343 (385)
T ss_dssp TTCCEEECSSSCSCTHHHHHTCCEECCSSHHHHHHHHHHHHTTC
T ss_pred cCCCEEEcCCCccchhhhhcCceEEcCCCHHHHHHHHHHHHhCh
Confidence 999999986653 3444554466777 69999999999999543
No 40
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.35 E-value=7e-11 Score=126.28 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=93.0
Q ss_pred CcEEEEEeccCCccC--HHHHHHHHHHhhccCCCeEEEE-EecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceE
Q 007215 363 SKGAYFLGKMVWAKG--YRELIDLLAKHKNDLDGFKLDV-FGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVF 439 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg--~~~Li~A~~~l~~~~~~~~LvI-vG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~ 439 (612)
..++++.|+....++ +..+++++..+ + +++++ +|.+.+.+.++ ++.-++.+.++.++. +++..||++
T Consensus 248 ~~v~v~~Gs~~~~~~~~~~~~~~al~~~----~-~~~v~~~g~~~~~~~l~----~~~~~v~~~~~~~~~-~ll~~ad~~ 317 (415)
T 3rsc_A 248 PVVLVSLGTTFNDRPGFFRDCARAFDGQ----P-WHVVMTLGGQVDPAALG----DLPPNVEAHRWVPHV-KVLEQATVC 317 (415)
T ss_dssp CEEEEECTTTSCCCHHHHHHHHHHHTTS----S-CEEEEECTTTSCGGGGC----CCCTTEEEESCCCHH-HHHHHEEEE
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHhcC----C-cEEEEEeCCCCChHHhc----CCCCcEEEEecCCHH-HHHhhCCEE
Confidence 445677888754432 44444444332 3 66666 66655544332 233358899888876 799999999
Q ss_pred EeccCCCcchHHHHHHHHcCCcEEeeCCCC-----ccccccCCcEEec--C--CHHHHHHHHHHHHhCCCCCCCH-----
Q 007215 440 INPSISDVLCTATAEALAMGKFVICADHPS-----NEFFRSFPNCLTY--K--TSEDFVARVKEALANDPQPLTP----- 505 (612)
Q Consensus 440 V~PS~~E~fgl~llEAMA~G~PVVas~~gg-----~~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~~~~----- 505 (612)
|..+ -..+++|||++|+|+|+....+ .+.+.....|..+ + ++++++++|.+++++ +..++.
T Consensus 318 v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~ 392 (415)
T 3rsc_A 318 VTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAAD-PALLARVEAMR 392 (415)
T ss_dssp EESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred EECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 9764 3468899999999999976543 2344445566666 2 899999999999954 432221
Q ss_pred -HHHhcCCHHHHHHHHHHHH
Q 007215 506 -EQRYNLSWEAATQRFIEYS 524 (612)
Q Consensus 506 -~~~~~~sWe~~~~~~~~~y 524 (612)
.......++++++.+.+.+
T Consensus 393 ~~~~~~~~~~~~~~~i~~~~ 412 (415)
T 3rsc_A 393 GHVRRAGGAARAADAVEAYL 412 (415)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHh
Confidence 1223345555555555544
No 41
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.28 E-value=1.2e-10 Score=123.27 Aligned_cols=223 Identities=9% Similarity=-0.031 Sum_probs=129.9
Q ss_pred hHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhc-----
Q 007215 242 DTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAY----- 315 (612)
Q Consensus 242 ~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 315 (612)
.+.+.+.+.+||+||++.... +. ...+++++ |++.+.++.... ..........++++..+..
T Consensus 98 ~l~~~l~~~~pD~Vi~~~~~~--~~---~~~a~~~giP~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~ 165 (384)
T 2p6p_A 98 RMLDFSRAWRPDLIVGGTMSY--VA---PLLALHLGVPHARQTWDAVDA-------DGIHPGADAELRPELSELGLERLP 165 (384)
T ss_dssp HHHHHHHHHCCSEEEEETTCT--HH---HHHHHHHTCCEEEECCSSCCC-------TTTHHHHHHHTHHHHHHTTCSSCC
T ss_pred HHHHHHhccCCcEEEECcchh--hH---HHHHHhcCCCEEEeccCCccc-------chhhHHHHHHHHHHHHHcCCCCCC
Confidence 344555667999999965422 11 23455667 988877653210 0001112222333332211
Q ss_pred -CCeEEEeChhhhccCCC----cEEEeCCCCCCCCCCCccchhhhhhccCCCCcEEEEEeccCCc-------cCHHHHHH
Q 007215 316 -CDKVLRLSAATQDLPKS----VICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWA-------KGYRELID 383 (612)
Q Consensus 316 -ad~vI~~S~~~~~~~~~----~i~vinGVd~~~f~~~~~~~~~~~~~~~~~~~~il~vGrl~~~-------Kg~~~Li~ 383 (612)
++.++..+....+.+.. .+..+ +.+ .+......... .++...+++++|++... +.++.+++
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~--~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~ 238 (384)
T 2p6p_A 166 APDLFIDICPPSLRPANAAPARMMRHV-ATS----RQCPLEPWMYT--RDTRQRVLVTSGSRVAKESYDRNFDFLRGLAK 238 (384)
T ss_dssp CCSEEEECSCGGGSCTTSCCCEECCCC-CCC----CCCBCCHHHHC--CCSSCEEEEECSSSSSCCSSCCCCTTHHHHHH
T ss_pred CCCeEEEECCHHHCCCCCCCCCceEec-CCC----CCCCCCchhhc--CCCCCEEEEECCCCCccccccccHHHHHHHHH
Confidence 56777777644332211 11111 111 01111111110 01223467789998765 67888888
Q ss_pred HHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEE
Q 007215 384 LLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVI 463 (612)
Q Consensus 384 A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVV 463 (612)
++.++ ++++++++++++.+.++ .+.-++.+ |+.+ ..+++..||+||..+ .+++++|||++|+|+|
T Consensus 239 al~~~-----~~~~~~~~g~~~~~~l~----~~~~~v~~-~~~~-~~~~l~~~d~~v~~~----G~~t~~Ea~~~G~P~v 303 (384)
T 2p6p_A 239 DLVRW-----DVELIVAAPDTVAEALR----AEVPQARV-GWTP-LDVVAPTCDLLVHHA----GGVSTLTGLSAGVPQL 303 (384)
T ss_dssp HHHTT-----TCEEEEECCHHHHHHHH----HHCTTSEE-ECCC-HHHHGGGCSEEEECS----CTTHHHHHHHTTCCEE
T ss_pred HHhcC-----CcEEEEEeCCCCHHhhC----CCCCceEE-cCCC-HHHHHhhCCEEEeCC----cHHHHHHHHHhCCCEE
Confidence 88754 57788776543323332 23335888 8875 567999999999863 4568999999999999
Q ss_pred eeCCCC----c-cccccCCcEEecC----CHHHHHHHHHHHHhC
Q 007215 464 CADHPS----N-EFFRSFPNCLTYK----TSEDFVARVKEALAN 498 (612)
Q Consensus 464 as~~gg----~-~~i~~~~~g~l~~----d~~~la~aI~~ll~~ 498 (612)
+.+..+ + +.+.+...|+.+. ++++++++|.+++.+
T Consensus 304 ~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 304 LIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp ECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred EccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 998753 2 2344455677662 799999999999954
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.12 E-value=9.4e-10 Score=118.91 Aligned_cols=147 Identities=11% Similarity=-0.032 Sum_probs=99.4
Q ss_pred cEEEEEeccCC-----ccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccce
Q 007215 364 KGAYFLGKMVW-----AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKV 438 (612)
Q Consensus 364 ~~il~vGrl~~-----~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv 438 (612)
.++++.|++.. .|.+..+++++..+ ++++++++++.+.+.+. .+.-++.+.+++++ .+++..||+
T Consensus 269 ~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~~~-~~ll~~ad~ 338 (441)
T 2yjn_A 269 RVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQLEGVA----NIPDNVRTVGFVPM-HALLPTCAA 338 (441)
T ss_dssp EEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTTSSCS----SCCSSEEECCSCCH-HHHGGGCSE
T ss_pred EEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcchhhhc----cCCCCEEEecCCCH-HHHHhhCCE
Confidence 46678899875 48888999998764 57788777655432221 22334889998886 679999999
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-cccccCCcEEec--C--CHHHHHHHHHHHHhCCCCCCC-----
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRSFPNCLTY--K--TSEDFVARVKEALANDPQPLT----- 504 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~~~~g~l~--~--d~~~la~aI~~ll~~~~~~~~----- 504 (612)
+|.. +.+.+++|||++|+|+|+.+..+ + +.+.+...|..+ . ++++++++|.++++++ ..++
T Consensus 339 ~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~ 413 (441)
T 2yjn_A 339 TVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDP-AHRAGAARM 413 (441)
T ss_dssp EEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCH-HHHHHHHHH
T ss_pred EEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence 9974 45689999999999999998754 1 234555667766 2 8999999999999553 3222
Q ss_pred -HHHHhcCCHHHHHHHHHHHHh
Q 007215 505 -PEQRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 505 -~~~~~~~sWe~~~~~~~~~y~ 525 (612)
+........+++++...+...
T Consensus 414 ~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 414 RDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 122344566677776666554
No 43
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=98.93 E-value=1.3e-07 Score=101.19 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=84.5
Q ss_pred CcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEE-EEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEe
Q 007215 363 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKL-DVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFIN 441 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~L-vIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~ 441 (612)
..++++.|+.. .+..+.+.++++.+.+ .++++ +++|.+.+.+.+. ++..++.+.++.++. +++..||+||.
T Consensus 256 ~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~d~~v~ 327 (424)
T 2iya_A 256 PVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVDPADLG----EVPPNVEVHQWVPQL-DILTKASAFIT 327 (424)
T ss_dssp CEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSCGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCChHHhc----cCCCCeEEecCCCHH-HHHhhCCEEEE
Confidence 34566788876 3333433333333333 35666 5568766543321 233348899998877 79999999987
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeCCCC-----ccccccCCcEEecC----CHHHHHHHHHHHHhCC
Q 007215 442 PSISDVLCTATAEALAMGKFVICADHPS-----NEFFRSFPNCLTYK----TSEDFVARVKEALAND 499 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~~gg-----~~~i~~~~~g~l~~----d~~~la~aI~~ll~~~ 499 (612)
. +...+++|||++|+|+|+.+..+ .+.+.....|..+. ++++++++|.++++++
T Consensus 328 ~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 390 (424)
T 2iya_A 328 H----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDP 390 (424)
T ss_dssp C----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCH
T ss_pred C----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCH
Confidence 4 34579999999999999998753 13344555676662 8999999999999543
No 44
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.92 E-value=4.8e-08 Score=104.33 Aligned_cols=121 Identities=11% Similarity=-0.005 Sum_probs=86.1
Q ss_pred CCcEEEEEeccC-CccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEE
Q 007215 362 FSKGAYFLGKMV-WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFI 440 (612)
Q Consensus 362 ~~~~il~vGrl~-~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V 440 (612)
.+.++++.|++. +.+.++.+++++.++ +.++++.++..+.+.. +..-++.+.++.+. .+++..+|++|
T Consensus 221 ~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~~~~-----~~~~~v~~~~~~~~-~~ll~~~d~~v 289 (404)
T 3h4t_A 221 SPPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGLGRI-----DEGDDCLVVGEVNH-QVLFGRVAAVV 289 (404)
T ss_dssp SCCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTCCCS-----SCCTTEEEESSCCH-HHHGGGSSEEE
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCcccccc-----cCCCCEEEecCCCH-HHHHhhCcEEE
Confidence 345667789887 777788888888775 4566666543332111 12234888888765 67999999999
Q ss_pred eccCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccccCCcEEec----CCHHHHHHHHHHHHh
Q 007215 441 NPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRSFPNCLTY----KTSEDFVARVKEALA 497 (612)
Q Consensus 441 ~PS~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~~~~~g~l~----~d~~~la~aI~~ll~ 497 (612)
..+ -..++.|||++|+|+|+....+. ..+.....|... .++++++++|.++++
T Consensus 290 ~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 351 (404)
T 3h4t_A 290 HHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT 351 (404)
T ss_dssp ECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS
T ss_pred ECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC
Confidence 764 34789999999999999977653 234444556655 289999999999994
No 45
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.80 E-value=4.4e-08 Score=110.63 Aligned_cols=167 Identities=12% Similarity=-0.010 Sum_probs=118.6
Q ss_pred CCCCcEEEEEeccCCccCHHH-HHHHHHHhhc---c----CCCeEEEEEecCCCH--HH------HHHHHH------HcC
Q 007215 360 QAFSKGAYFLGKMVWAKGYRE-LIDLLAKHKN---D----LDGFKLDVFGNGEDA--YE------VQSAAK------RLD 417 (612)
Q Consensus 360 ~~~~~~il~vGrl~~~Kg~~~-Li~A~~~l~~---~----~~~~~LvIvG~g~~~--~~------l~~~~~------~l~ 417 (612)
.++.+.++++.|+...|+++. ++..+.++.+ . ..++.++|.|.+... .. +.+.++ +.+
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~ 602 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVG 602 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTG
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccC
Confidence 467789999999999999999 7887766643 2 135899999987753 11 334444 344
Q ss_pred C--ceEEecCCCCHH--HHHhccceEEeccC--CCcchHHHHHHHHcCCcEEeeCCCCccccc---cCCcEEec-CCHHH
Q 007215 418 L--NLNFQKGRDHAD--DSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTY-KTSED 487 (612)
Q Consensus 418 l--~v~f~g~~~~~~--~ll~~aDv~V~PS~--~E~fgl~llEAMA~G~PVVas~~gg~~~i~---~~~~g~l~-~d~~~ 487 (612)
. .|.|+..++..- .++.+||++.+||+ .|+.|+.-+=||..|++.|++-.|.+-++. +.+||+++ .++++
T Consensus 603 ~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 682 (796)
T 1l5w_A 603 DKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQ 682 (796)
T ss_dssp GGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEEEecCCHHH
Confidence 3 477877766444 89999999999999 899999999999999999999888754443 45799999 77777
Q ss_pred HHHHHHH------HHhCCCCCCC----HHHHhcCCHHHHHHHHHHHHhccccc
Q 007215 488 FVARVKE------ALANDPQPLT----PEQRYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 488 la~aI~~------ll~~~~~~~~----~~~~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
+.+.-.. ...+++. ++ ......|+|+.. +.|.++|+ .++
T Consensus 683 v~~l~~~~y~a~~~y~~~~~-~~~vvd~~~~g~fs~~~~-~~y~~Ly~--~L~ 731 (796)
T 1l5w_A 683 VKAILAKGYDPVKWRKKDKV-LDAVLKELESGKYSDGDK-HAFDQMLH--SIG 731 (796)
T ss_dssp HHHHHHHCCCHHHHHHHCHH-HHHHHHHHHHTTTTTTCT-TTTHHHHH--HTS
T ss_pred HHHHHHcccCHHHHhhcCHH-HHHHHHHHHcCCCCCCcH-HHHHHHHH--HHh
Confidence 6532111 1212221 21 333456888765 77888888 554
No 46
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.79 E-value=2.1e-08 Score=93.48 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=89.4
Q ss_pred CcEEEEEeccC---CccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHH--hccc
Q 007215 363 SKGAYFLGKMV---WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSL--HGYK 437 (612)
Q Consensus 363 ~~~il~vGrl~---~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll--~~aD 437 (612)
..+++++|++. +.|++..+++++.++ +.++++++++...+ .+.-++++.+++++ .+++ ..||
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~~-------~~~~~v~~~~~~~~-~~~l~~~~ad 88 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKPD-------TLGLNTRLYKWIPQ-NDLLGHPKTR 88 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCCT-------TCCTTEEEESSCCH-HHHHTSTTEE
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCcc-------cCCCcEEEecCCCH-HHHhcCCCcC
Confidence 45677899985 678888888888654 36777777655422 23335999999887 5677 8899
Q ss_pred eEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-----ccccccCCcEEecC----CHHHHHHHHHHHHhC
Q 007215 438 VFINPSISDVLCTATAEALAMGKFVICADHPS-----NEFFRSFPNCLTYK----TSEDFVARVKEALAN 498 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-----~~~i~~~~~g~l~~----d~~~la~aI~~ll~~ 498 (612)
++|.. +.+.+++|||++|+|+|+.+..+ .+.+.+...|+.+. ++++++++|.+++.+
T Consensus 89 ~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 89 AFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp EEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred EEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 99974 45689999999999999998753 23455566777773 899999999999954
No 47
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.76 E-value=1.4e-08 Score=112.36 Aligned_cols=231 Identities=8% Similarity=-0.051 Sum_probs=139.0
Q ss_pred HhHhhhccCCCccEEEECCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchhHHHHHHHHHHHHHHhcCCeE
Q 007215 241 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 319 (612)
Q Consensus 241 ~~l~~~l~~~~pDVVh~~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ad~v 319 (612)
..+.+.|.+.++||.+--+-...... .......- |+-.+.-+...... . -..|.+
T Consensus 339 ~~ia~~Ir~d~IDILVdL~g~t~~~~---i~~aa~RpAPVQvs~lGyp~TTG----l-----------------~~iDY~ 394 (631)
T 3q3e_A 339 EFIRSVCESNGAAIFYMPSIGMDMTT---IFASNTRLAPIQAIALGHPATTH----S-----------------DFIEYV 394 (631)
T ss_dssp HHHHHHHHHHTCSEEEESCCSSSHHH---HHHTTSCCSSEEEEECSSCSCCC----C-----------------TTCCEE
T ss_pred HHHHHHHHhcCCCEEEECCCCCCchh---HHHHhCCCchheEeccCCCcccC----c-----------------ccCCEE
Confidence 45778888899999987332221111 11112222 77666544321110 0 024777
Q ss_pred EEeChh--hhccCCCcEEEeCCCCCCCCCCCccchhhhhhccCCC--CcEEEEEeccCCccCHHHHHHHHHHhhccCCCe
Q 007215 320 LRLSAA--TQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAF--SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGF 395 (612)
Q Consensus 320 I~~S~~--~~~~~~~~i~vinGVd~~~f~~~~~~~~~~~~~~~~~--~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~ 395 (612)
|+-... .+....+++...|+.-.. +.|....+.+..++++.+ ..++..++ ...|..+.+++++.++.++.|+.
T Consensus 395 i~D~~~~~~~~~ysEklirLP~~~~~-~~p~~~~p~r~~~~lp~~~G~v~Fg~fn--~~~Ki~p~~l~~WarIL~~vP~s 471 (631)
T 3q3e_A 395 IVEDDYVGSEECFSETLLRLPKDALP-YVPSALAPEKVDYLLRENPEVVNIGIAS--TTMKLNPYFLEALKAIRDRAKVK 471 (631)
T ss_dssp EEEGGGCCCGGGCSSEEEEECTTSSC-CCCCTTCCSSCCCCCCSCCSEEEEEEEE--CSTTCCHHHHHHHHHHHHHCSSE
T ss_pred EeCCCCCCcccCceeeEEECCCCccc-cCCcccCCccccccCCcCCCeEEEEECC--ccccCCHHHHHHHHHHHHhCCCc
Confidence 775432 122334555555532111 122211222334444443 23334444 46799999999999999998987
Q ss_pred EEE--EEecCCC-HHHHHHHHHHcCCc--eEEecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 396 KLD--VFGNGED-AYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 396 ~Lv--IvG~g~~-~~~l~~~~~~l~l~--v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
.+. ++|.++. ...+.+.+.+.|+. +.|.|..+..+ +.++.+|+|+.|+.+. .|++.+|||+||+|||+...+
T Consensus 472 ~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~-GgtTtlEALwmGVPVVTl~G~ 550 (631)
T 3q3e_A 472 VHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFG-NTNGIIDMVTLGLVGVCKTGA 550 (631)
T ss_dssp EEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSSSC-CSHHHHHHHHTTCCEEEECCS
T ss_pred EEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCccc-CChHHHHHHHcCCCEEeccCC
Confidence 664 3564322 23333344556663 88999988766 7889999999998765 499999999999999998665
Q ss_pred Cccccc-------cCCcEE-ecCCHHHHHHHHHHHHhCC
Q 007215 469 SNEFFR-------SFPNCL-TYKTSEDFVARVKEALAND 499 (612)
Q Consensus 469 g~~~i~-------~~~~g~-l~~d~~~la~aI~~ll~~~ 499 (612)
+...-+ -|-..+ +..|.++++++..++.++.
T Consensus 551 ~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~ 589 (631)
T 3q3e_A 551 EVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENH 589 (631)
T ss_dssp SHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCH
T ss_pred cHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCH
Confidence 432111 133343 5589999999999999554
No 48
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.70 E-value=6.6e-07 Score=95.64 Aligned_cols=119 Identities=13% Similarity=-0.007 Sum_probs=83.6
Q ss_pred CcEEEEEecc-CCccCHHHHHHHHHHhhccCCCeEEEEE-ecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEE
Q 007215 363 SKGAYFLGKM-VWAKGYRELIDLLAKHKNDLDGFKLDVF-GNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFI 440 (612)
Q Consensus 363 ~~~il~vGrl-~~~Kg~~~Li~A~~~l~~~~~~~~LvIv-G~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V 440 (612)
..++++.|++ ...+..+.++++++++. .+++++ |.+... . ..+.-++.+.++.++ .+++..||+||
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~~-----~~~v~~~g~~~~~--~----~~~~~~v~~~~~~~~-~~~l~~~d~~v 306 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAHG-----RRVILSRGWADLV--L----PDDGADCFAIGEVNH-QVLFGRVAAVI 306 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHTT-----CCEEECTTCTTCC--C----SSCGGGEEECSSCCH-HHHGGGSSEEE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHCC-----CeEEEEeCCCccc--c----cCCCCCEEEeCcCCh-HHHHhhCCEEE
Confidence 4566788998 58888999999998762 345444 755432 1 112224888898876 46899999999
Q ss_pred eccCCCcchHHHHHHHHcCCcEEeeCCCC----c-cccccCCcEEec----CCHHHHHHHHHHHHhC
Q 007215 441 NPSISDVLCTATAEALAMGKFVICADHPS----N-EFFRSFPNCLTY----KTSEDFVARVKEALAN 498 (612)
Q Consensus 441 ~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i~~~~~g~l~----~d~~~la~aI~~ll~~ 498 (612)
.. +...+++|||++|+|+|+.+..+ + +.+.....|..+ .++++++++|.++ .+
T Consensus 307 ~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~ 368 (415)
T 1iir_A 307 HH----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LT 368 (415)
T ss_dssp EC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TS
T ss_pred eC----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cC
Confidence 75 34479999999999999998754 1 234444567666 2899999999999 54
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.64 E-value=4.9e-08 Score=103.37 Aligned_cols=124 Identities=15% Similarity=0.058 Sum_probs=75.8
Q ss_pred cEEEEEeccCCccC-HHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEec
Q 007215 364 KGAYFLGKMVWAKG-YRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 442 (612)
Q Consensus 364 ~~il~vGrl~~~Kg-~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~P 442 (612)
.+++..|++...++ .+.+.+++..+.+ .+..+++.+.+.+.+. ...+.-++.+.++.+. .+++..+|+||.-
T Consensus 239 ~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~----~~~~~~~v~~~~~~p~-~~lL~~~~~~v~h 311 (400)
T 4amg_A 239 RIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLAL----LGELPANVRVVEWIPL-GALLETCDAIIHH 311 (400)
T ss_dssp EEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCCC----CCCCCTTEEEECCCCH-HHHHTTCSEEEEC
T ss_pred EEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCccccc----cccCCCCEEEEeecCH-HHHhhhhhheecc
Confidence 34456787765443 3344444444443 2456666655443221 1122224777787764 4689999998753
Q ss_pred cCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 443 SISDVLCTATAEALAMGKFVICADHPSN-----EFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 443 S~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
+...+++|||++|+|+|+....+. +.+.+...|..+.+.+..+++|.++|++
T Consensus 312 ----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~~~~~al~~lL~d 368 (400)
T 4amg_A 312 ----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSLGAEQCRRLLDD 368 (400)
T ss_dssp ----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTTCSHHHHHHHHHC
T ss_pred ----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCCchHHHHHHHHcC
Confidence 456789999999999999876641 2334445566666666778899999954
No 50
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.53 E-value=6.3e-07 Score=101.24 Aligned_cols=167 Identities=11% Similarity=0.009 Sum_probs=117.0
Q ss_pred CCCCcEEEEEeccCCccCHHH-HHHHHHHhhc--cC-----CCeEEEEEecCCCH--HH------HHHHHH------HcC
Q 007215 360 QAFSKGAYFLGKMVWAKGYRE-LIDLLAKHKN--DL-----DGFKLDVFGNGEDA--YE------VQSAAK------RLD 417 (612)
Q Consensus 360 ~~~~~~il~vGrl~~~Kg~~~-Li~A~~~l~~--~~-----~~~~LvIvG~g~~~--~~------l~~~~~------~l~ 417 (612)
.++.+.++++.|+...|+++. ++..+.++.+ +. .++.++|.|.+... .. +.+.++ +..
T Consensus 513 dpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~ 592 (796)
T 2c4m_A 513 DPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVS 592 (796)
T ss_dssp CTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTT
T ss_pred CCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccC
Confidence 567889999999999999999 8888776653 22 35899999987753 22 344444 444
Q ss_pred C--ceEEecCCCCHH--HHHhccceEEeccC--CCcchHHHHHHHHcCCcEEeeCCCCccccc---cCCcEEec-C---C
Q 007215 418 L--NLNFQKGRDHAD--DSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTY-K---T 484 (612)
Q Consensus 418 l--~v~f~g~~~~~~--~ll~~aDv~V~PS~--~E~fgl~llEAMA~G~PVVas~~gg~~~i~---~~~~g~l~-~---d 484 (612)
. .|.|+..++..- .++.+||++.+||+ .|+.|+.-+=||..|++.|++-.|.+.++. +.+||+++ . +
T Consensus 593 ~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 672 (796)
T 2c4m_A 593 PLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEE 672 (796)
T ss_dssp TTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESCCTTT
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEEEecCchhh
Confidence 4 488887776544 89999999999999 899999999999999999999888754433 45799999 3 3
Q ss_pred HHHHHHH--HHHHHhCCCCCCCHH----HHhcCCHHHHHHHHHHHHhccccc
Q 007215 485 SEDFVAR--VKEALANDPQPLTPE----QRYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 485 ~~~la~a--I~~ll~~~~~~~~~~----~~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
+.++-.+ -..+..+++ .+++. ....|+|+.. +.|.++|+ .++
T Consensus 673 v~~l~~~y~a~~~y~~~~-~~~~vvd~~~~g~fs~~~~-~~y~~Ly~--~L~ 720 (796)
T 2c4m_A 673 LPALRESYKPYELYETVP-GLKRALDALDNGTLNDNNS-GLFYDLKH--SLI 720 (796)
T ss_dssp HHHHHHTCCHHHHHHHST-THHHHHHTTTSSSSCCTTC-CHHHHHHH--HHH
T ss_pred HHHHHHhhChHHHhhcCH-HHHHHHHHHHcCCCCCCCH-HHHHHHHH--HHH
Confidence 3344322 001122233 22211 1245788666 77999998 654
No 51
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.53 E-value=5.8e-06 Score=88.23 Aligned_cols=119 Identities=9% Similarity=-0.029 Sum_probs=83.7
Q ss_pred CcEEEEEeccC---CccCHHHHHHHHHHhhccCCCeEEEEE-ecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccce
Q 007215 363 SKGAYFLGKMV---WAKGYRELIDLLAKHKNDLDGFKLDVF-GNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKV 438 (612)
Q Consensus 363 ~~~il~vGrl~---~~Kg~~~Li~A~~~l~~~~~~~~LvIv-G~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv 438 (612)
..++++.|+.. ..+.++.++++++.+ +.+++++ |.++.. . ..+.-++.+.++.+ ..+++..||+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~~-~~~ll~~~d~ 305 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTELV--L----PDDRDDCFAIDEVN-FQALFRRVAA 305 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTCC--C----SCCCTTEEEESSCC-HHHHGGGSSE
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCcccc--c----cCCCCCEEEeccCC-hHHHhccCCE
Confidence 34667788874 467788888888765 3455554 655421 1 12233488889887 4579999999
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccccCCcEEec----CCHHHHHHHHHHHHhC
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRSFPNCLTY----KTSEDFVARVKEALAN 498 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~~~~~g~l~----~d~~~la~aI~~ll~~ 498 (612)
+|.- +...+++|||++|+|+|+.+..+. +.+.+...|..+ .++++++++|.++ .+
T Consensus 306 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~ 369 (416)
T 1rrv_A 306 VIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LA 369 (416)
T ss_dssp EEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TS
T ss_pred EEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hC
Confidence 9973 446799999999999999877541 234444566655 3789999999998 54
No 52
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.24 E-value=1.9e-06 Score=97.65 Aligned_cols=167 Identities=10% Similarity=0.016 Sum_probs=116.8
Q ss_pred CCCCcEEEEEeccCCccCHHHH-HHHHHHhh---cc--CC--CeEEEEEecCCCH--HH------HHHHHHHc------C
Q 007215 360 QAFSKGAYFLGKMVWAKGYREL-IDLLAKHK---ND--LD--GFKLDVFGNGEDA--YE------VQSAAKRL------D 417 (612)
Q Consensus 360 ~~~~~~il~vGrl~~~Kg~~~L-i~A~~~l~---~~--~~--~~~LvIvG~g~~~--~~------l~~~~~~l------~ 417 (612)
.++.+.++++.|+...|+.+.+ +..+.++. +. .| +..+++.|.+... .. +.+.++.. +
T Consensus 547 dpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~ 626 (824)
T 2gj4_A 547 NPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVG 626 (824)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTG
T ss_pred CCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccC
Confidence 4677899999999999999998 77777663 22 11 5789999987753 22 44444433 2
Q ss_pred C--ceEEecCCCCHH--HHHhccceEEeccC--CCcchHHHHHHHHcCCcEEeeCCCCccccc---cCCcEEec-CCHHH
Q 007215 418 L--NLNFQKGRDHAD--DSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTY-KTSED 487 (612)
Q Consensus 418 l--~v~f~g~~~~~~--~ll~~aDv~V~PS~--~E~fgl~llEAMA~G~PVVas~~gg~~~i~---~~~~g~l~-~d~~~ 487 (612)
. .|.|+..++..- .++.+||++++||+ .|+.|+.-+=||..|++.|++-.|.+.++. +.+||+++ .++++
T Consensus 627 ~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~~~e 706 (824)
T 2gj4_A 627 DRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVED 706 (824)
T ss_dssp GGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCcHHH
Confidence 2 477887776544 89999999999999 899999999999999999999888764544 56799999 56666
Q ss_pred HHHHHHH-------HHhCCCCC---CCHHHHhcCCHHHHHHHHHHHHhccccc
Q 007215 488 FVARVKE-------ALANDPQP---LTPEQRYNLSWEAATQRFIEYSELNRIL 530 (612)
Q Consensus 488 la~aI~~-------ll~~~~~~---~~~~~~~~~sWe~~~~~~~~~y~~~~~~ 530 (612)
+ .++.+ +...++.. ........|+|+.. ++|.++|+ .++
T Consensus 707 v-~~l~~~~~~a~~~Y~~~~~l~~v~d~i~~g~fs~~~~-~~y~~ly~--~l~ 755 (824)
T 2gj4_A 707 V-DRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQP-DLFKDIVN--MLM 755 (824)
T ss_dssp H-HHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTCTTST-TTTHHHHH--HHH
T ss_pred H-HHHHHcCCCHHHHhcCCHHHHHHHHHHHhCCCCCCCh-HHHHHHHH--HHH
Confidence 6 44421 11111110 01223345787665 66778877 554
No 53
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.15 E-value=0.00012 Score=73.91 Aligned_cols=93 Identities=12% Similarity=-0.003 Sum_probs=67.1
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC-HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEec
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 442 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~-~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~P 442 (612)
.+++++|..+...-...+++++.. . .++ .++.|.+.. .+++++.+++.. +++++++.++..++++.||++|.+
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~---~-~~i-~vv~G~~~~~~~~l~~~~~~~~-~v~v~~~~~~m~~~m~~aDlvI~~ 232 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPK---T-KII-SIATSSSNPNLKKLQKFAKLHN-NIRLFIDHENIAKLMNESNKLIIS 232 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCT---T-SCE-EEEECTTCTTHHHHHHHHHTCS-SEEEEESCSCHHHHHHTEEEEEEE
T ss_pred eEEEEECCCchhhHHHHHHHHhhc---C-CCE-EEEECCCchHHHHHHHHHhhCC-CEEEEeCHHHHHHHHHHCCEEEEC
Confidence 456688877655434444555432 2 233 566777654 467777666543 688999999999999999999985
Q ss_pred cCCCcchHHHHHHHHcCCcEEeeCC
Q 007215 443 SISDVLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 443 S~~E~fgl~llEAMA~G~PVVas~~ 467 (612)
.|+|+.|++++|+|.|.-..
T Consensus 233 -----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 233 -----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp -----SSHHHHHHHHTTCCEEEECC
T ss_pred -----CcHHHHHHHHcCCCEEEEeC
Confidence 25899999999999998754
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.71 E-value=0.00018 Score=82.44 Aligned_cols=175 Identities=10% Similarity=-0.040 Sum_probs=119.7
Q ss_pred CCccchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC-HHHHHHHHHHcCCc---eEE
Q 007215 347 IGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLN---LNF 422 (612)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~-~~~l~~~~~~l~l~---v~f 422 (612)
+......+..++++.+.. +|..--...|=-+..++++.++.++.|+.+|++...... ...+++.+++.|+. +.|
T Consensus 507 ~~~~~~~R~~~gLp~~~v--~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f 584 (723)
T 4gyw_A 507 RTIIVTTRSQYGLPEDAI--VYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIF 584 (723)
T ss_dssp CSEEEEEGGGGTCCTTSE--EEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEE
T ss_pred ccccccchhhcCCCCCCE--EEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEE
Confidence 333445567778887743 343333456778889999999999999999988876443 46788888888986 889
Q ss_pred ecCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc------ccccc-CCcEEecCCHHHHHHHHH
Q 007215 423 QKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN------EFFRS-FPNCLTYKTSEDFVARVK 493 (612)
Q Consensus 423 ~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~------~~i~~-~~~g~l~~d~~~la~aI~ 493 (612)
.+..+..+ ..++.+|+++=|-.+ +-++|.+||+.||+|||+-..... ..+.. |-.-++..|.++..+.-.
T Consensus 585 ~~~~~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~ 663 (723)
T 4gyw_A 585 SPVAPKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAV 663 (723)
T ss_dssp EECCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHH
Confidence 88887655 677788999988655 558999999999999998754321 12211 222234488999988888
Q ss_pred HHHhCCCCCCC--------HH-HHhcCCHHHHHHHHHHHHh
Q 007215 494 EALANDPQPLT--------PE-QRYNLSWEAATQRFIEYSE 525 (612)
Q Consensus 494 ~ll~~~~~~~~--------~~-~~~~~sWe~~~~~~~~~y~ 525 (612)
++.++ ++.+. .+ ...-|+=+..++.+.+.|+
T Consensus 664 ~la~d-~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~ 703 (723)
T 4gyw_A 664 KLGTD-LEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYL 703 (723)
T ss_dssp HHHHC-HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred HHhcC-HHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHH
Confidence 88744 33222 11 1112555666667777776
No 55
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=95.84 E-value=0.01 Score=57.53 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=39.4
Q ss_pred CceEEecCCCCHHHHHh-ccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 418 LNLNFQKGRDHADDSLH-GYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 418 l~v~f~g~~~~~~~ll~-~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
..+..+++.++..++++ .||++|.= +-..+++|++++|+|.|.-..+
T Consensus 114 ~~v~v~~f~~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 114 LKVIGFDFSTKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp SEEEECCSSSSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCS
T ss_pred ceEEEeeccchHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCc
Confidence 34667788888889999 99999865 4567999999999999998664
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=95.19 E-value=0.039 Score=56.59 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=68.5
Q ss_pred hhhhhccCCCCc-EEEEEec-cCCccCH--HHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcC----Cce-EEe
Q 007215 353 TDREQGQQAFSK-GAYFLGK-MVWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLD----LNL-NFQ 423 (612)
Q Consensus 353 ~~~~~~~~~~~~-~il~vGr-l~~~Kg~--~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~----l~v-~f~ 423 (612)
....+++...++ +++..|. ..+.|.. +.+.++++.+.++ ++++++.|+..+.+..+++.+..+ ..+ .+.
T Consensus 170 ~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~ 247 (348)
T 1psw_A 170 TCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLA 247 (348)
T ss_dssp HHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECT
T ss_pred HHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhhHHHHHHHHHhhhhccccceEecc
Confidence 334455543344 4456665 4455654 4788888887665 688999987666655555554433 233 455
Q ss_pred cCCCCHH--HHHhccceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 424 KGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 424 g~~~~~~--~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
|..+-.+ ++++.||++|-.. .|..-+ |.|+|+|+|+-
T Consensus 248 g~~sl~e~~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 248 GETQLDQAVILIAACKAIVTND----SGLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHHHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEE
T ss_pred CcCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEE
Confidence 6554333 9999999999875 243334 99999999986
No 57
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=95.17 E-value=0.042 Score=59.13 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=55.6
Q ss_pred ceEEecCCCCHHHHHh--ccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccccC-CcEEec----CCHH
Q 007215 419 NLNFQKGRDHADDSLH--GYKVFINPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRSF-PNCLTY----KTSE 486 (612)
Q Consensus 419 ~v~f~g~~~~~~~ll~--~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~~~-~~g~l~----~d~~ 486 (612)
++.+.++.++. ++|. .+|+||.= +-..+++||+++|+|+|+-+..+- ..+.+. ..|..+ -+.+
T Consensus 326 ~~~v~~w~pq~-~vL~h~~~~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~ 400 (456)
T 2c1x_A 326 YGMVVPWAPQA-EVLAHEAVGAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKS 400 (456)
T ss_dssp TEEEESCCCHH-HHHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHH
T ss_pred ceEEecCCCHH-HHhcCCcCCEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHH
Confidence 47777877765 5888 66788653 456799999999999999987541 234444 556655 3789
Q ss_pred HHHHHHHHHHhC
Q 007215 487 DFVARVKEALAN 498 (612)
Q Consensus 487 ~la~aI~~ll~~ 498 (612)
+++++|.+++.+
T Consensus 401 ~l~~~i~~ll~~ 412 (456)
T 2c1x_A 401 GLMSCFDQILSQ 412 (456)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHCC
Confidence 999999999954
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=94.85 E-value=0.11 Score=55.71 Aligned_cols=128 Identities=13% Similarity=0.030 Sum_probs=75.7
Q ss_pred CCcEE-EEEeccCCc--cCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHH-HHHHHcCCceEEecCCCCHHHHHhccc
Q 007215 362 FSKGA-YFLGKMVWA--KGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQ-SAAKRLDLNLNFQKGRDHADDSLHGYK 437 (612)
Q Consensus 362 ~~~~i-l~vGrl~~~--Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~-~~~~~l~l~v~f~g~~~~~~~ll~~aD 437 (612)
.+++| +..|..... ..+..++++++.. +.+++++-+....+.+. ...++..-++.+.++.++ .+++..++
T Consensus 272 ~~~vVyvsfGS~~~~~~~~~~el~~~l~~~-----~~~flw~~~~~~~~~lp~~~~~~~~~~~~vv~w~Pq-~~vL~h~~ 345 (454)
T 3hbf_A 272 NSSVVYISFGSVVTPPPHELTALAESLEEC-----GFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQ-VEILKHSS 345 (454)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHH-----CCCEEEECCSCHHHHSCTTHHHHTTTTEEEESSCCH-HHHHHSTT
T ss_pred CCceEEEecCCCCcCCHHHHHHHHHHHHhC-----CCeEEEEeCCcchhcCCHhHHhhcCCceEEEeeCCH-HHHHhhcC
Confidence 34444 566766532 2244455555443 34444443222221111 112233335777788876 47999999
Q ss_pred eEEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccccC-CcEEec----CCHHHHHHHHHHHHh
Q 007215 438 VFINPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRSF-PNCLTY----KTSEDFVARVKEALA 497 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~~~-~~g~l~----~d~~~la~aI~~ll~ 497 (612)
+-++-+. +--.+++||+++|+|+|+-...+- ..+.+. ..|..+ -+.++++++|.+++.
T Consensus 346 v~~fvtH--~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~ 413 (454)
T 3hbf_A 346 VGVFLTH--SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMS 413 (454)
T ss_dssp EEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHS
T ss_pred cCeEEec--CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHC
Confidence 5444433 345689999999999999976541 234443 566655 478999999999994
No 59
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=94.44 E-value=0.13 Score=55.55 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCceEEecCCCCHHHHHhccce--EEeccCCCcchHHHHHHHHcCCcEEeeCCCCc-----cccc-cCCcEEec---CCH
Q 007215 417 DLNLNFQKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVICADHPSN-----EFFR-SFPNCLTY---KTS 485 (612)
Q Consensus 417 ~l~v~f~g~~~~~~~ll~~aDv--~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~-----~~i~-~~~~g~l~---~d~ 485 (612)
.-++.+.++.++. ++|+.+++ ||.= +-..+++||+++|+|+|+-...+- ..+. .-..|..+ -+.
T Consensus 352 ~~~~~v~~~~pq~-~~L~h~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 426 (482)
T 2pq6_A 352 ADRGLIASWCPQD-KVLNHPSIGGFLTH----CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKR 426 (482)
T ss_dssp TTTEEEESCCCHH-HHHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCH
T ss_pred CCCEEEEeecCHH-HHhcCCCCCEEEec----CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCH
Confidence 3357888888765 58877665 5432 456799999999999999987642 2343 34556655 389
Q ss_pred HHHHHHHHHHHhC
Q 007215 486 EDFVARVKEALAN 498 (612)
Q Consensus 486 ~~la~aI~~ll~~ 498 (612)
++++++|.+++.+
T Consensus 427 ~~l~~~i~~ll~~ 439 (482)
T 2pq6_A 427 EELAKLINEVIAG 439 (482)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999943
No 60
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=94.19 E-value=0.22 Score=56.56 Aligned_cols=130 Identities=11% Similarity=0.014 Sum_probs=92.9
Q ss_pred CCCcEEEEEeccCCccCHHH-HHHHH---HHhhcc-------------CCCeEEEEEecCCCH----HHHHHH----HH-
Q 007215 361 AFSKGAYFLGKMVWAKGYRE-LIDLL---AKHKND-------------LDGFKLDVFGNGEDA----YEVQSA----AK- 414 (612)
Q Consensus 361 ~~~~~il~vGrl~~~Kg~~~-Li~A~---~~l~~~-------------~~~~~LvIvG~g~~~----~~l~~~----~~- 414 (612)
++...++++-|+...|-... ++..+ .++++. ..+..+++.|..... +.+.++ ++
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 55677889999999999988 56554 344444 245778888875432 233222 22
Q ss_pred -----HcCC--ceEEecCCCCH--HHHHhccceEEeccCC--CcchHHHHHHHHcCCcEEeeCCCCccccc---cCCcEE
Q 007215 415 -----RLDL--NLNFQKGRDHA--DDSLHGYKVFINPSIS--DVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCL 480 (612)
Q Consensus 415 -----~l~l--~v~f~g~~~~~--~~ll~~aDv~V~PS~~--E~fgl~llEAMA~G~PVVas~~gg~~~i~---~~~~g~ 480 (612)
+.+. .|.|+..+.=. +.++.+|||-.+.|+. |..|+.=+=+|.-|.+.|+|-.|.+-|+. +.+|++
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~f 757 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVF 757 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSE
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEE
Confidence 1222 38888877633 3889999999999885 99999999999999999999999754444 467999
Q ss_pred ec-CCHHHHHH
Q 007215 481 TY-KTSEDFVA 490 (612)
Q Consensus 481 l~-~d~~~la~ 490 (612)
++ .+.+++.+
T Consensus 758 iFG~~~~ev~~ 768 (879)
T 1ygp_A 758 LFGNLSENVEE 768 (879)
T ss_dssp EESCCHHHHHH
T ss_pred EccCCHHHHHH
Confidence 99 66665544
No 61
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=93.35 E-value=0.21 Score=51.61 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=70.9
Q ss_pred hccCCCCcEE-EEEeccCCccCH--HHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc-eEEecCCCCHH--
Q 007215 357 QGQQAFSKGA-YFLGKMVWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKGRDHAD-- 430 (612)
Q Consensus 357 ~~~~~~~~~i-l~vGrl~~~Kg~--~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~-v~f~g~~~~~~-- 430 (612)
.++.+.+++| +..|.-.+.|.. +...++++.+.++ ++++++.|+..+.+..++..+..+.. +.+.|..+-.+
T Consensus 179 ~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ 256 (349)
T 3tov_A 179 HGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLA 256 (349)
T ss_dssp TTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHH
T ss_pred cCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHH
Confidence 3454444555 555654445544 5777777777665 67888889877777777776666544 45556555444
Q ss_pred HHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 431 DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
.+++.||++|-.- .|..-+ |.|+|+|+|+-=.+.
T Consensus 257 ali~~a~~~i~~D----sG~~Hl-Aaa~g~P~v~lfg~t 290 (349)
T 3tov_A 257 AAMNRCNLLITND----SGPMHV-GISQGVPIVALYGPS 290 (349)
T ss_dssp HHHHTCSEEEEES----SHHHHH-HHTTTCCEEEECSSC
T ss_pred HHHHhCCEEEECC----CCHHHH-HHhcCCCEEEEECCC
Confidence 9999999999872 244445 899999999974333
No 62
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=91.62 E-value=0.65 Score=49.82 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=72.3
Q ss_pred EEEEEeccCCccC---HHHHHHHHHHhhccCCCeEEEE-EecC--CCHHHHHHHHHHcCCceEEecCCCCHHHHHh--cc
Q 007215 365 GAYFLGKMVWAKG---YRELIDLLAKHKNDLDGFKLDV-FGNG--EDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GY 436 (612)
Q Consensus 365 ~il~vGrl~~~Kg---~~~Li~A~~~l~~~~~~~~LvI-vG~g--~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~a 436 (612)
+++..|.....-+ +..++++++.. +.++++ +|.+ ...+.+.+.... .-++.+.++.++. ++|. .+
T Consensus 279 v~vs~GS~~~~~~~~~~~~~~~~l~~~-----~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~v~~w~pq~-~vL~h~~~ 351 (463)
T 2acv_A 279 VFLCFGSMGVSFGPSQIREIALGLKHS-----GVRFLWSNSAEKKVFPEGFLEWMEL-EGKGMICGWAPQV-EVLAHKAI 351 (463)
T ss_dssp EEEECCSSCCCCCHHHHHHHHHHHHHH-----TCEEEEECCCCGGGSCTTHHHHHHH-HCSEEEESSCCHH-HHHHSTTE
T ss_pred EEEEeccccccCCHHHHHHHHHHHHhC-----CCcEEEEECCCcccCChhHHHhhcc-CCCEEEEccCCHH-HHhCCCcc
Confidence 4456677652223 44555555442 344544 4442 011223222210 1246777877765 5776 56
Q ss_pred ceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC-c----cc-cccCCcEEec------C----CHHHHHHHHHHHHh
Q 007215 437 KVFINPSISDVLCTATAEALAMGKFVICADHPS-N----EF-FRSFPNCLTY------K----TSEDFVARVKEALA 497 (612)
Q Consensus 437 Dv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg-~----~~-i~~~~~g~l~------~----d~~~la~aI~~ll~ 497 (612)
|+||.= +-..+++||+++|+|+|+-...+ . .. +.....|..+ + +.++++++|.++++
T Consensus 352 ~~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 352 GGFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp EEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred CeEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHh
Confidence 778653 45679999999999999997754 1 23 2344555544 2 67999999999993
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=91.12 E-value=0.84 Score=46.12 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=75.4
Q ss_pred cEEEEEeccCCccCH--HHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHH--HHHhccce
Q 007215 364 KGAYFLGKMVWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKV 438 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~--~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv 438 (612)
.+++..|.-.+.|.. +.+.++++.+.++ ++++++.++++.+ +..+++.+... .+.+.|..+-.+ .+++.||+
T Consensus 180 ~i~l~pga~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 180 YAVFLHATTRDDKHWPEEHWRELIGLLADS--GIRIKLPWGAPHEEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp EEEEECCCSSGGGSCCHHHHHHHHHHTTTT--CCEEEECCSSHHHHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCSE
T ss_pred EEEEEeCCCCccccCCHHHHHHHHHHHHHC--CCcEEEecCCHHHHHHHHHHHhhCC-cccccCCCCHHHHHHHHHhCCE
Confidence 344556654455554 4777777777653 6788887434433 33444444332 355666555444 99999999
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeCCCCccc----------cc-cCCcEEecCCHHHHHHHHHHHHh
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICADHPSNEF----------FR-SFPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~----------i~-~~~~g~l~~d~~~la~aI~~ll~ 497 (612)
+|-.- .|..=+ |.|+|+|+|+-=.+..+. +. ....|+-.=++++..+++.++++
T Consensus 257 ~I~~D----SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~ 321 (326)
T 2gt1_A 257 VVSVD----TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAE 321 (326)
T ss_dssp EEEES----SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTT
T ss_pred EEecC----CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHH
Confidence 99873 255555 777999999873222111 11 11112222578999999998884
No 64
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=88.93 E-value=2 Score=46.21 Aligned_cols=74 Identities=15% Similarity=-0.017 Sum_probs=51.4
Q ss_pred EEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC----c-ccc-ccCCcEEec--C-----CHHH
Q 007215 421 NFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----N-EFF-RSFPNCLTY--K-----TSED 487 (612)
Q Consensus 421 ~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg----~-~~i-~~~~~g~l~--~-----d~~~ 487 (612)
.+.++.++. ++|+.+++-++-+. +--.+++||+++|+|+|+-...+ + ..+ ..-..|..+ . +.++
T Consensus 342 ~v~~w~Pq~-~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~ 418 (480)
T 2vch_A 342 VIPFWAPQA-QVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREE 418 (480)
T ss_dssp EEESCCCHH-HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHH
T ss_pred EEeCccCHH-HHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHH
Confidence 334577654 79998885444332 44568999999999999998764 1 232 244455544 2 6799
Q ss_pred HHHHHHHHHh
Q 007215 488 FVARVKEALA 497 (612)
Q Consensus 488 la~aI~~ll~ 497 (612)
++++|.+++.
T Consensus 419 l~~av~~vl~ 428 (480)
T 2vch_A 419 VARVVKGLME 428 (480)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999999994
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=83.80 E-value=3.2 Score=47.12 Aligned_cols=169 Identities=8% Similarity=-0.049 Sum_probs=95.4
Q ss_pred CCeEEEeChhhhc-----cCC--CcEEEeCCCCC-C-CC-CCC---ccchhhhhhccCCCCcEEEEEeccCCc----cC-
Q 007215 316 CDKVLRLSAATQD-----LPK--SVICNVHGVNP-K-FL-QIG---EKVATDREQGQQAFSKGAYFLGKMVWA----KG- 377 (612)
Q Consensus 316 ad~vI~~S~~~~~-----~~~--~~i~vinGVd~-~-~f-~~~---~~~~~~~~~~~~~~~~~il~vGrl~~~----Kg- 377 (612)
.|.+++.|+...+ +.- .++.. -|..- + ++ ... .....+++++++.++++|+|.-..... +|
T Consensus 479 ~D~~~~~s~~~~~~~~~~f~~~~~~i~~-~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~ 557 (729)
T 3l7i_A 479 WDYLISPNRYSTEIFRSAFWMDEERILE-IGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGK 557 (729)
T ss_dssp CSEEEESSHHHHHHHHHHTCCCGGGEEE-SCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGS
T ss_pred CCEEEeCCHHHHHHHHHHhCCCcceEEE-cCCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccccc
Confidence 5999999997544 222 23322 35431 1 12 111 123456677888889999998765432 11
Q ss_pred ----HHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHH--HHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHH
Q 007215 378 ----YRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAA--KRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTA 451 (612)
Q Consensus 378 ----~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~--~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~ 451 (612)
...-++.+.+... .+..+++-.. +. +.... ..+...+.......+..+++..||++|-= ++-+
T Consensus 558 ~~~~~~~~~~~l~~~l~--~~~~li~r~H-p~---~~~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lITD-----ySSv 626 (729)
T 3l7i_A 558 YLFELKIDLDNLYKELG--DDYVILLRMH-YL---ISNALDLSGYENFAIDVSNYNDVSELFLISDCLITD-----YSSV 626 (729)
T ss_dssp SCCCCTTCHHHHHHHHT--TTEEEEECCC-HH---HHTTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEES-----SCTH
T ss_pred cccchhhHHHHHHHHcC--CCeEEEEecC-cc---hhccccccccCCcEEeCCCCcCHHHHHHHhCEEEee-----chHH
Confidence 1111233322222 3565665442 21 11111 11111244456667788999999999764 4558
Q ss_pred HHHHHHcCCcEEeeCCC---------C-ccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 452 TAEALAMGKFVICADHP---------S-NEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 452 llEAMA~G~PVVas~~g---------g-~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
+.|++..++|||-.... | .-.+.+..-|-++.|.++|.++|....
T Consensus 627 ~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~~~~ 681 (729)
T 3l7i_A 627 MFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTEPYGLAKELKNLD 681 (729)
T ss_dssp HHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESSHHHHHHHHTTHH
T ss_pred HHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECCHHHHHHHHhhhh
Confidence 99999999999988321 1 111222223456689999999998776
No 66
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=61.30 E-value=53 Score=28.08 Aligned_cols=107 Identities=9% Similarity=-0.020 Sum_probs=63.8
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHH-----cCCcEEe
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALA-----MGKFVIC 464 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA-----~G~PVVa 464 (612)
..+++|+.+.+.. ..+.+...+.|..+.......+.-+.+.. .|+++.-.. .+.-|+.+++.+. ..+|||.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 4677888754433 55666666666555443322222244433 376665433 3455777887775 3678776
Q ss_pred eC-CCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhCCC
Q 007215 465 AD-HPSNE----FFRSFPNCLTY--KTSEDFVARVKEALANDP 500 (612)
Q Consensus 465 s~-~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~~~ 500 (612)
.- ....+ .+..+..+++. -+.+++.++|.+++....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 53 33322 23346677777 799999999999985443
No 67
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=53.83 E-value=40 Score=33.27 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=50.2
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 392 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.++++++-+-+ .+.+..++.+++++... ..+.++++...|+++..+......-.+.+|+..|++|++-.
T Consensus 29 ~~~~~l~av~d-~~~~~~~~~a~~~~~~~-----~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EK 97 (308)
T 3uuw_A 29 SERFEFVGAFT-PNKVKREKICSDYRIMP-----FDSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVDK 97 (308)
T ss_dssp CSSSEEEEEEC-SCHHHHHHHHHHHTCCB-----CSCHHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCeEEEEEEC-CCHHHHHHHHHHcCCCC-----cCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcC
Confidence 36777775443 45566777778777432 56778888888988887766655666789999999999763
No 68
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=53.83 E-value=1.9e+02 Score=30.68 Aligned_cols=90 Identities=10% Similarity=0.040 Sum_probs=56.0
Q ss_pred ccCHHHHHHHHHH-hhcc--------CCCeEEEEEecC---CCHHHHHHHHHHcCCceE-EecCCCCHHHHHh--ccceE
Q 007215 375 AKGYRELIDLLAK-HKND--------LDGFKLDVFGNG---EDAYEVQSAAKRLDLNLN-FQKGRDHADDSLH--GYKVF 439 (612)
Q Consensus 375 ~Kg~~~Li~A~~~-l~~~--------~~~~~LvIvG~g---~~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~--~aDv~ 439 (612)
..|.+.+++++-+ +.+. ..+-.+-|+|.- .|..+++++.+++|+++. +++.-...+++-+ .|++-
T Consensus 192 ~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNIiG~~~~~gD~~eik~lL~~~Gi~v~~~~~g~~t~~ei~~~~~A~~n 271 (492)
T 3u7q_A 192 SLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLN 271 (492)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCCCTTEEEEEEECCBTTTTHHHHHHHHHTTCEEEEEEETTCCHHHHHHGGGCSEE
T ss_pred hHHHHHHHHHHHHHHhhhcccccccCCCCCcEEEECCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhhcCcEE
Confidence 4567777777644 4322 123567888842 345889999999999944 3444444554444 44554
Q ss_pred EeccCCCcchHHHHHHH--HcCCcEEeeC
Q 007215 440 INPSISDVLCTATAEAL--AMGKFVICAD 466 (612)
Q Consensus 440 V~PS~~E~fgl~llEAM--A~G~PVVas~ 466 (612)
+.. ...++..+.+.| -+|+|.+..+
T Consensus 272 iv~--~~~~~~~~A~~Le~~~GiP~i~~~ 298 (492)
T 3u7q_A 272 LVH--CYRSMNYISRHMEEKYGIPWMEYN 298 (492)
T ss_dssp EES--CHHHHHHHHHHHHHHHCCCEEECC
T ss_pred EEE--ChHHHHHHHHHHHHHhCCceEecC
Confidence 443 223566777777 4799999764
No 69
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=53.17 E-value=58 Score=32.61 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=54.6
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHHc
Q 007215 381 LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAM 458 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA~ 458 (612)
.+.++... ++++++-+.+ .+.+..++.+++++..-. +.+.+++++. .|+++..+....-.-.+++|+.+
T Consensus 39 ~~~~~~~~----~~~~lvav~d-~~~~~a~~~a~~~g~~~~----y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~a 109 (350)
T 4had_A 39 VVPAIQDA----ENCVVTAIAS-RDLTRAREMADRFSVPHA----FGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADA 109 (350)
T ss_dssp HHHHHHHC----SSEEEEEEEC-SSHHHHHHHHHHHTCSEE----ESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHHhC----CCeEEEEEEC-CCHHHHHHHHHHcCCCee----eCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhc
Confidence 45555544 6788776654 456777888888886422 3567788876 47877776665555668999999
Q ss_pred CCcEEeeC
Q 007215 459 GKFVICAD 466 (612)
Q Consensus 459 G~PVVas~ 466 (612)
|++|++-.
T Consensus 110 GkhVl~EK 117 (350)
T 4had_A 110 GKHVVCEK 117 (350)
T ss_dssp TCEEEECS
T ss_pred CCEEEEeC
Confidence 99999874
No 70
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=51.14 E-value=38 Score=34.39 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=60.6
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhcc--ceEEec
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINP 442 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~a--Dv~V~P 442 (612)
.+..+|--...+..-..+.++..+....++++++-+-+ .+.+..++.+++++..-. ..+.+++++.. |+++..
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d-~~~~~a~~~a~~~g~~~~----y~d~~ell~~~~iDaV~Ia 101 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAE-ANAGLAEARAGEFGFEKA----TADWRALIADPEVDVVSVT 101 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEEC-C--TTHHHHHHHHTCSEE----ESCHHHHHHCTTCCEEEEC
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEEC-CCHHHHHHHHHHhCCCee----cCCHHHHhcCCCCcEEEEC
Confidence 56666642222223233334444444557788776665 334556777888886422 35677888864 777777
Q ss_pred cCCCcchHHHHHHHHcCCcEEeeC
Q 007215 443 SISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 443 S~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+....-.-.+++|+.+|++|++=.
T Consensus 102 tP~~~H~~~a~~al~aGkhVl~EK 125 (393)
T 4fb5_A 102 TPNQFHAEMAIAALEAGKHVWCEK 125 (393)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CChHHHHHHHHHHHhcCCeEEEcc
Confidence 666555667899999999999874
No 71
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=50.64 E-value=32 Score=34.47 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=73.7
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCcc----chhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGEK----VATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~~----~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++.+ ..+.||||-|.+..+|... -..++.+|.- ....|.|+|-+....=...++.++.
T Consensus 96 ~~D~iviR~~~~~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l-~glkva~vGD~~~~rva~Sl~~~~~ 174 (306)
T 4ekn_B 96 YADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRI-DGIKIAFVGDLKYGRTVHSLVYALS 174 (306)
T ss_dssp HCSEEEEECSSTTHHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSCS-TTCEEEEESCTTTCHHHHHHHHHHH
T ss_pred hCcEEEEEcCChHHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCc-CCCEEEEEcCCCCCcHHHHHHHHHH
Confidence 46877765542 222222 5677899887666666522 2234444422 2467899996543333556777776
Q ss_pred HhhccCCCeEEEEEecCCC--HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 387 KHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~--~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
++ +++++.+++.... .+.+.+.+++.|..+... .+.++.++.+||+.....
T Consensus 175 ~~----~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvy~~~~ 227 (306)
T 4ekn_B 175 LF----ENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEK---ESLDDLDDDIDVLYVTRI 227 (306)
T ss_dssp TS----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEE---SCGGGCCTTCSEEEECCC
T ss_pred hc----CCCEEEEECCcccccCHHHHHHHHHcCCEEEEE---cCHHHHhcCCCEEEeCCc
Confidence 55 4688999985322 255555667777665543 455677899998876543
No 72
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=49.59 E-value=31 Score=32.50 Aligned_cols=99 Identities=16% Similarity=-0.007 Sum_probs=61.5
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHHH--HHhccceEEeccCCCc
Q 007215 374 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHADD--SLHGYKVFINPSISDV 447 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~~--ll~~aDv~V~PS~~E~ 447 (612)
-.|=.+.|.+|+.-+.+- .+-+++++|..... +.+++.++..|-. -+|+|+.-.... -+..-|+++..... .
T Consensus 49 L~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~-~ 126 (208)
T 1vi6_A 49 IRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPA-I 126 (208)
T ss_dssp HHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTT-T
T ss_pred HHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCC-c
Confidence 345566777777666655 45678999986665 4566667766654 346666554442 12234666555432 2
Q ss_pred chHHHHHHHHcCCcEEee-CCCCccccc
Q 007215 448 LCTATAEALAMGKFVICA-DHPSNEFFR 474 (612)
Q Consensus 448 fgl~llEAMA~G~PVVas-~~gg~~~i~ 474 (612)
=-.++.||.-.|.|||+- |.......+
T Consensus 127 e~~ai~EA~~l~IPvIalvDTn~~p~~V 154 (208)
T 1vi6_A 127 DKQAVSEATAVGIPVVALCDSNNSSADV 154 (208)
T ss_dssp THHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred chhHHHHHHHhCCCEEEEeCCCCCcccc
Confidence 246899999999999998 444444333
No 73
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=48.72 E-value=75 Score=26.21 Aligned_cols=101 Identities=12% Similarity=0.175 Sum_probs=57.7
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHH--c-CCcEEee-C
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALA--M-GKFVICA-D 466 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA--~-G~PVVas-~ 466 (612)
..+++|+.+.+.. ..+....++.|..+.......+.-+.+.. .|++++| +.-|+.+++.+. . .+|||.. .
T Consensus 18 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls~ 94 (137)
T 2pln_A 18 SMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSD 94 (137)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEEEeC
Confidence 4667777754432 45555566666554433332222233333 4777733 334566666654 3 7777765 3
Q ss_pred CCCcc----ccccCCcEEec--C-CHHHHHHHHHHHHh
Q 007215 467 HPSNE----FFRSFPNCLTY--K-TSEDFVARVKEALA 497 (612)
Q Consensus 467 ~gg~~----~i~~~~~g~l~--~-d~~~la~aI~~ll~ 497 (612)
....+ .+..+..+++. - +.+++.++|..++.
T Consensus 95 ~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 95 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp SCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 33322 23346667777 6 99999999999883
No 74
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=48.14 E-value=73 Score=31.86 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 392 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.++++++-+-+ .+.+..++.++++++.+.. ..+.++++.. .|+++..+....-.-.+.+|+.+|++|++-.
T Consensus 25 ~~~~~l~av~d-~~~~~~~~~~~~~g~~~~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EK 97 (344)
T 3mz0_A 25 LSGAEIVAVTD-VNQEAAQKVVEQYQLNATV---YPNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEK 97 (344)
T ss_dssp CSSEEEEEEEC-SSHHHHHHHHHHTTCCCEE---ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEEEEc-CCHHHHHHHHHHhCCCCee---eCCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCCcEEEcC
Confidence 36777765543 4556777778888754333 3567788887 7888887766555566789999999999853
No 75
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=48.06 E-value=1.1e+02 Score=25.05 Aligned_cols=104 Identities=7% Similarity=0.001 Sum_probs=62.6
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHHc-----CCcEEe
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALAM-----GKFVIC 464 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA~-----G~PVVa 464 (612)
..+++|+.+.+.. ..+.....+.|..+.......+.-+.+.. .|+++.-.. .+.-|+.+++.+.. .+|||.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 3567777754433 55666666666555443332222234433 376666433 35567788887764 678877
Q ss_pred eCCCC-c-----cccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 465 ADHPS-N-----EFFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 465 s~~gg-~-----~~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
.-... . ..+..+..+++. -+.++|.++|.++++
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 64432 2 223335667777 799999999999984
No 76
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=46.46 E-value=60 Score=32.77 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=49.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHHcCCcEEeeCC
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~ 467 (612)
+.+++-+.+ .+.+..++.+++++..-. ..+.+++++. .|+++..+....-.-.+++||.+|++|++-.-
T Consensus 37 ~~~l~av~d-~~~~~a~~~a~~~g~~~~----~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKP 107 (390)
T 4h3v_A 37 HPDLNVLCG-RDAEAVRAAAGKLGWSTT----ETDWRTLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKP 107 (390)
T ss_dssp EEEEEEEEC-SSHHHHHHHHHHHTCSEE----ESCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CceEEEEEc-CCHHHHHHHHHHcCCCcc----cCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeecC
Confidence 456665554 456777888888886522 3567788876 47777776666666678999999999998743
No 77
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=45.35 E-value=1.1e+02 Score=25.38 Aligned_cols=105 Identities=11% Similarity=-0.018 Sum_probs=63.8
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHHc-----CCcEEe
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALAM-----GKFVIC 464 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA~-----G~PVVa 464 (612)
..+++|+.+.+.. ..+.....+.|..+.......+..+.+.. .|+++.-.. .+.-|+.+++.+.. .+|||.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 5678888865543 56666666666555443332222233332 577665433 34557788888764 677776
Q ss_pred e-CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 465 A-DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 465 s-~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
. .....+ .+..+..+++. -+.++|.++|..++..
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 5 333322 23346677777 7899999999998843
No 78
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=44.74 E-value=85 Score=31.13 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=52.4
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEeccCCCcchHHHHHHHHc
Q 007215 381 LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPSISDVLCTATAEALAM 458 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~PS~~E~fgl~llEAMA~ 458 (612)
.++++.+. ++++++-+-+ .+.+..++.+++++.. ..+.+++++ ..|+++..+......-.+.+|+..
T Consensus 18 ~~~~l~~~----~~~~l~av~d-~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~ 86 (331)
T 4hkt_A 18 HAKAVSGN----ADARLVAVAD-AFPAAAEAIAGAYGCE------VRTIDAIEAAADIDAVVICTPTDTHADLIERFARA 86 (331)
T ss_dssp HHHHHHHC----TTEEEEEEEC-SSHHHHHHHHHHTTCE------ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHhhC----CCcEEEEEEC-CCHHHHHHHHHHhCCC------cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHc
Confidence 44555443 5777765443 4556677777887743 467778888 679888877665555667899999
Q ss_pred CCcEEeeC
Q 007215 459 GKFVICAD 466 (612)
Q Consensus 459 G~PVVas~ 466 (612)
|++|++-.
T Consensus 87 gk~v~~EK 94 (331)
T 4hkt_A 87 GKAIFCEK 94 (331)
T ss_dssp TCEEEECS
T ss_pred CCcEEEec
Confidence 99999864
No 79
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=44.56 E-value=1.3e+02 Score=29.75 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=52.5
Q ss_pred HHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEeccCCCcchHHHHHHHH
Q 007215 380 ELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPSISDVLCTATAEALA 457 (612)
Q Consensus 380 ~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~PS~~E~fgl~llEAMA 457 (612)
.+++++.+. ++++++-+-+ .+.+..++.+++++.. ....+.++++. ..|+++..+....-.-.+.+|+.
T Consensus 19 ~~~~~l~~~----~~~~l~av~d-~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~ 89 (330)
T 3e9m_A 19 RFVAGLRES----AQAEVRGIAS-RRLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLALS 89 (330)
T ss_dssp HHHHHHHHS----SSEEEEEEBC-SSSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHH
T ss_pred HHHHHHHhC----CCcEEEEEEe-CCHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHH
Confidence 355666554 5677765544 3445567777777742 23466778888 67888877665555556789999
Q ss_pred cCCcEEeeC
Q 007215 458 MGKFVICAD 466 (612)
Q Consensus 458 ~G~PVVas~ 466 (612)
.|++|++-.
T Consensus 90 ~gk~vl~EK 98 (330)
T 3e9m_A 90 QGKPVLLEK 98 (330)
T ss_dssp TTCCEEECS
T ss_pred CCCeEEEeC
Confidence 999999864
No 80
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=42.45 E-value=15 Score=30.58 Aligned_cols=63 Identities=10% Similarity=0.041 Sum_probs=42.5
Q ss_pred EEEEecCCCH----HHHHHHHHHcCCceEE-ecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCC
Q 007215 397 LDVFGNGEDA----YEVQSAAKRLDLNLNF-QKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGK 460 (612)
Q Consensus 397 LvIvG~g~~~----~~l~~~~~~l~l~v~f-~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~ 460 (612)
++++|.|-.. +.+++.+++.|+++.+ .....+..+.+..+|+++..... .+-..-++..+-.+
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv-~~~~~~~~~~~~~~ 74 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQI-AYMLPEIQRLLPNK 74 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTS-GGGHHHHHHHSSSS
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccch-hhhHHHHHHHhcCC
Confidence 6677777654 6677788999998655 55666677788999988876543 34445555555333
No 81
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=42.39 E-value=1.4e+02 Score=24.65 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=62.9
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCc--eEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHHc-----CCcE
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLN--LNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALAM-----GKFV 462 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA~-----G~PV 462 (612)
..+++|+.+.+.. ..+.....+.+.. +.......+.-+.+.. .|+++.-.. .+.-|+.+++.+.. ++||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 4678888754432 5566667777765 3333332222244433 366665433 34567788888764 6788
Q ss_pred EeeCC-CCcc----ccccCCcEEec--C-CHHHHHHHHHHHHh
Q 007215 463 ICADH-PSNE----FFRSFPNCLTY--K-TSEDFVARVKEALA 497 (612)
Q Consensus 463 Vas~~-gg~~----~i~~~~~g~l~--~-d~~~la~aI~~ll~ 497 (612)
|+... ...+ .+..+..+++. . +.+++.++|..+++
T Consensus 85 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 85 VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 77533 3322 33346677777 5 89999999998883
No 82
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=41.76 E-value=88 Score=31.42 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=49.1
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHHcCCcEEeeCC
Q 007215 392 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~ 467 (612)
.++++++-+-+ .+.+..++.+++++.. ...+.+++++. .|+++..+....-.-.+.+|+..|++|++-.-
T Consensus 27 ~~~~~lvav~d-~~~~~~~~~~~~~g~~-----~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (354)
T 3db2_A 27 SEKLKLVTCYS-RTEDKREKFGKRYNCA-----GDATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKP 98 (354)
T ss_dssp CSSEEEEEEEC-SSHHHHHHHHHHHTCC-----CCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESS
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHcCCC-----CcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEEccC
Confidence 36777765543 4556677777777743 25677788854 68888776665555667899999999998753
No 83
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=41.49 E-value=85 Score=32.07 Aligned_cols=68 Identities=9% Similarity=0.076 Sum_probs=48.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
++++++-+-+ .+.+..++.+++++.. . ..+.+++++. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 26 ~~~~l~av~d-~~~~~~~~~a~~~g~~--~---~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EK 95 (387)
T 3moi_A 26 PDAQIVAACD-PNEDVRERFGKEYGIP--V---FATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEK 95 (387)
T ss_dssp TTEEEEEEEC-SCHHHHHHHHHHHTCC--E---ESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCeEEEEEEe-CCHHHHHHHHHHcCCC--e---ECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeC
Confidence 5677765554 4456666777777754 2 3577788886 7888887766555556889999999999764
No 84
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=41.39 E-value=1.5e+02 Score=24.42 Aligned_cols=103 Identities=10% Similarity=0.001 Sum_probs=61.6
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHh----ccceEEecc-CCCcchHHHHHHHH---cCCcEEee
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLH----GYKVFINPS-ISDVLCTATAEALA---MGKFVICA 465 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~----~aDv~V~PS-~~E~fgl~llEAMA---~G~PVVas 465 (612)
.+++|+.+.+.. ..+.....+.+..+.......+..+.+. ..|+++.-. ..+.-|+.+++.+. ..+|||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 567777754432 5566666777755554433333334554 357666543 33555666666654 36777765
Q ss_pred -CCCCc----cccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 466 -DHPSN----EFFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 466 -~~gg~----~~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
..... ..+..+..+++. -+.+++.++|..++.
T Consensus 84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 84 TGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 33332 233446677777 799999999999883
No 85
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=41.39 E-value=45 Score=29.56 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHH----HcCCcEEeeCCC---Cccc
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEAL----AMGKFVICADHP---SNEF 472 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAM----A~G~PVVas~~g---g~~~ 472 (612)
+.+++.+.++|+.+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|+ +.++|+|=-... ..|.
T Consensus 36 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~ 115 (151)
T 3u80_A 36 KLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDE 115 (151)
T ss_dssp HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC----
T ss_pred HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccc
Confidence 334455666676666655544444 444443 3 8899988878899999994 459999976443 3443
Q ss_pred ccc------CCcEEec-CCHHHHHHHHHHHH
Q 007215 473 FRS------FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 473 i~~------~~~g~l~-~d~~~la~aI~~ll 496 (612)
+.. -..|.++ --.+...-++..++
T Consensus 116 FRh~S~~s~~a~G~I~G~G~~gY~lAl~~~~ 146 (151)
T 3u80_A 116 FRKRSVISPVATGTITGMGFYGYKLALDAVA 146 (151)
T ss_dssp -----CSCCCCSEEEESSTTHHHHHHHHHHH
T ss_pred hhhcccccccceEEEEecChHHHHHHHHHHH
Confidence 332 3467777 44555555555544
No 86
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=40.67 E-value=78 Score=30.42 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=46.0
Q ss_pred EEEEEec-CCCHHHHHHHHHHc-CCceE-EecCCCCHHHHHh-ccceEEeccCCCcchHHHHHHHHcCCcEEeeCCC
Q 007215 396 KLDVFGN-GEDAYEVQSAAKRL-DLNLN-FQKGRDHADDSLH-GYKVFINPSISDVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 396 ~LvIvG~-g~~~~~l~~~~~~l-~l~v~-f~g~~~~~~~ll~-~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~g 468 (612)
++.|+|. |..-..+.+.+.+. +.++. ......+.++++. .+|+.|--+..+..--.+..|+..|+|+|..-.|
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 5778884 66666666655443 44433 3333344556665 7899995555565544456678999999987655
No 87
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=39.83 E-value=1.6e+02 Score=24.20 Aligned_cols=103 Identities=9% Similarity=0.049 Sum_probs=60.7
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHHc-----CCcEEe
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALAM-----GKFVIC 464 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA~-----G~PVVa 464 (612)
..+++|+.+.+.. ..+....++.|..+.......+..+.+.. .|+++.-.. .+.-|+.+++.+.. .+|||.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE
Confidence 5678888754433 55666666667555443333332244443 466665433 34457778887754 467766
Q ss_pred e-CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHH
Q 007215 465 A-DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEAL 496 (612)
Q Consensus 465 s-~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll 496 (612)
. .....+ .+..+..+++. -+.+++.++|..++
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 87 LTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp EECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 5 333222 23334556666 68999999999887
No 88
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=39.36 E-value=1.6e+02 Score=24.24 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=61.3
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc---cceEEeccCC-C-cchHHHHHHHH--cCCcEEee
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG---YKVFINPSIS-D-VLCTATAEALA--MGKFVICA 465 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~---aDv~V~PS~~-E-~fgl~llEAMA--~G~PVVas 465 (612)
+.+++|+.+.+.. ..+.....+.|..+.......+.-+.+.. .|+++.-... + .-|+.+++.+. ..+|||..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 3567788754432 55666667777655543332222244433 4777664333 3 45666776654 47788765
Q ss_pred -CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 466 -DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 466 -~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
.....+ .+..+..+++. -+.+++.++|..++.
T Consensus 85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 333222 23335566776 789999999999883
No 89
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=38.99 E-value=3.9e+02 Score=28.62 Aligned_cols=108 Identities=12% Similarity=0.167 Sum_probs=65.7
Q ss_pred ccCHHHHHHHHHH-hhcc----CCCeEEEEEec---CCCHHHHHHHHHHcCCceE-EecCCCCHHHHHhcc--ceEEecc
Q 007215 375 AKGYRELIDLLAK-HKND----LDGFKLDVFGN---GEDAYEVQSAAKRLDLNLN-FQKGRDHADDSLHGY--KVFINPS 443 (612)
Q Consensus 375 ~Kg~~~Li~A~~~-l~~~----~~~~~LvIvG~---g~~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~a--Dv~V~PS 443 (612)
..|.+..++++-+ +... ..+-.+-|+|. +.+..+++++.+++|+++. +++.-...+++-+.. ++.+..+
T Consensus 182 ~~G~~~a~~al~~~~~~~~~~~~~~~~VNIlG~~~~~gD~~eikrlL~~~Gi~v~~~~~gg~t~~ei~~~~~A~~niv~~ 261 (533)
T 1mio_A 182 SAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQC 261 (533)
T ss_dssp HHHHHHHHHHHHHHTTBCCCCCCCTTEEEEEEECCBTSHHHHHHHHHHHHTCEEEEEEETTCCHHHHHBTTSCSEEEESC
T ss_pred hHHHHHHHHHHHHHhcccccCCCCCCeEEEEcCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhhcCCEEEEEC
Confidence 3578777777643 3321 11346777775 3345889999999999843 455445566555554 4444433
Q ss_pred CCCcchHHHHHHHH--cCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 444 ISDVLCTATAEALA--MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 444 ~~E~fgl~llEAMA--~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
...+..+.+.|- +|+|.+..+-=|. .+.+++-++|.+++
T Consensus 262 --~~~~~~~A~~Leer~GiP~i~~~piG~------------~~T~~~Lr~ia~~~ 302 (533)
T 1mio_A 262 --HRSINYIAEMMETKYGIPWIKCNFIGV------------DGIVETLRDMAKCF 302 (533)
T ss_dssp --HHHHHHHHHHHHHHHCCCEEECCCSSH------------HHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHHhCCCeEEecCCCH------------HHHHHHHHHHHHHh
Confidence 224677888885 7999998631122 23455666666666
No 90
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=38.70 E-value=58 Score=33.32 Aligned_cols=102 Identities=11% Similarity=0.014 Sum_probs=62.5
Q ss_pred CcEEEeCCCCCCCCCCCc----cchhhhhhccC-CCCcE--EEEEeccCCc--cCHHHHHHHHHHhhccCCCeEEEEEec
Q 007215 332 SVICNVHGVNPKFLQIGE----KVATDREQGQQ-AFSKG--AYFLGKMVWA--KGYRELIDLLAKHKNDLDGFKLDVFGN 402 (612)
Q Consensus 332 ~~i~vinGVd~~~f~~~~----~~~~~~~~~~~-~~~~~--il~vGrl~~~--Kg~~~Li~A~~~l~~~~~~~~LvIvG~ 402 (612)
..+.||||-|.. .|.. .-..++.+|.. -.... +.|+|-+... .=...++.++.++ ++++.+++.
T Consensus 156 ~~vPVINag~g~--HPtQaLaDl~TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~-----G~~v~~~~P 228 (359)
T 1zq6_A 156 SPVPVINMETIT--HPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRM-----GMDVTLLCP 228 (359)
T ss_dssp CSSCEEESSSSC--CHHHHHHHHHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHT-----TCEEEEECS
T ss_pred CCCCEEeCCCCC--CcHHHHHHHHHHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHHc-----CCEEEEEcC
Confidence 557788977755 5542 22344455531 11234 7899986543 3367888888877 578999986
Q ss_pred C----CCH---HHHHHHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 403 G----EDA---YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 403 g----~~~---~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
. ++. +.+++.+++.|..+.+ ..+.++.++.+||+....
T Consensus 229 ~~~~~~~~~~~~~~~~~a~~~g~~v~~---~~d~~eav~~aDvVyt~~ 273 (359)
T 1zq6_A 229 TPDYILDERYMDWAAQNVAESGGSLQV---SHDIDSAYAGADVVYAKS 273 (359)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHSCEEEE---ECCHHHHHTTCSEEEEEC
T ss_pred ccccCCCHHHHHHHHHHHHHcCCeEEE---ECCHHHHhcCCCEEEECC
Confidence 4 221 2233445566655554 345678899999877654
No 91
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=38.41 E-value=62 Score=26.93 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=44.1
Q ss_pred EEEEecCCCH----HHHHHHHHHcCCceEEec-CCCCHHHHHhccceEEeccCCCcchHHHHHHHHc--CCcEEeeC
Q 007215 397 LDVFGNGEDA----YEVQSAAKRLDLNLNFQK-GRDHADDSLHGYKVFINPSISDVLCTATAEALAM--GKFVICAD 466 (612)
Q Consensus 397 LvIvG~g~~~----~~l~~~~~~l~l~v~f~g-~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~--G~PVVas~ 466 (612)
+++++.|-.. ..+++.+++.|+++.... ...+.++.+..+|++++.... .|-..=++..+- |+||.+-+
T Consensus 10 lL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV-~y~~~~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 10 LVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV-RSYYREMKVDAERLGIQIVATR 85 (108)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGG-GGGHHHHHHHHTTTTCEEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHH-HHHHHHHHHHhhhcCCcEEEeC
Confidence 4555555443 667778888898876633 344455677889988875432 333445566554 89998764
No 92
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=37.47 E-value=58 Score=30.84 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEecCC---C----HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCC----
Q 007215 378 YRELIDLLAKHKNDLDGFKLDVFGNGE---D----AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISD---- 446 (612)
Q Consensus 378 ~~~Li~A~~~l~~~~~~~~LvIvG~g~---~----~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E---- 446 (612)
++.+.++++++.+. +-+++++..+. + ...+.+..+++|.++..+...++..+.+..||..++|- -+
T Consensus 17 l~~~~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~ 93 (229)
T 1fy2_A 17 LEHALPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQL 93 (229)
T ss_dssp TTTTHHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHH
T ss_pred HHHHHHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHH
Confidence 33345555555442 45677777552 1 24455666778866555444455557888999999995 22
Q ss_pred -------cchHHHHHHHHcCCcEEeeCCCC
Q 007215 447 -------VLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 447 -------~fgl~llEAMA~G~PVVas~~gg 469 (612)
++--.+-|+...|+|++.+-.|.
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 94 LKESRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 23335677888999999998775
No 93
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=37.13 E-value=51 Score=31.95 Aligned_cols=100 Identities=10% Similarity=0.013 Sum_probs=59.6
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHH--HHHhccceEEeccCCCc
Q 007215 374 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHAD--DSLHGYKVFINPSISDV 447 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~--~ll~~aDv~V~PS~~E~ 447 (612)
-.|=.+.|.+|+.-+..-..+-+++++|..... +.+.+.+++.|-. -+|+|+.-... .-+..-|+++.....+
T Consensus 84 L~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~- 162 (253)
T 3bch_A 84 LKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRA- 162 (253)
T ss_dssp HHHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCc-
Confidence 345556677777666522224568889976554 4455666666654 34666654433 2233346666554322
Q ss_pred chHHHHHHHHcCCcEEee-CCCCccccc
Q 007215 448 LCTATAEALAMGKFVICA-DHPSNEFFR 474 (612)
Q Consensus 448 fgl~llEAMA~G~PVVas-~~gg~~~i~ 474 (612)
=-.++.||...|.|||+- |.......+
T Consensus 163 e~~AI~EA~~lgIPvIalvDTn~dp~~V 190 (253)
T 3bch_A 163 DHQPLTEASYVNLPTIALCNTDSPLRYV 190 (253)
T ss_dssp THHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred cchHHHHHHHhCCCEEEEEcCCCCcccC
Confidence 246899999999999998 544444333
No 94
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=37.10 E-value=58 Score=29.30 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=41.7
Q ss_pred HHHhccceEEeccC-CCcchHH---HHHHHHcCCcEEeeCC-----CCc-cc----ccc-----------------CCcE
Q 007215 431 DSLHGYKVFINPSI-SDVLCTA---TAEALAMGKFVICADH-----PSN-EF----FRS-----------------FPNC 479 (612)
Q Consensus 431 ~ll~~aDv~V~PS~-~E~fgl~---llEAMA~G~PVVas~~-----gg~-~~----i~~-----------------~~~g 479 (612)
+.+..||++|.--. .+.=.-+ +==|.|.|+||++-.. |+. .. +.+ ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 67889998775321 2222334 4447899999998843 221 10 111 1278
Q ss_pred EecCCHHHHHHHHHHHH
Q 007215 480 LTYKTSEDFVARVKEAL 496 (612)
Q Consensus 480 ~l~~d~~~la~aI~~ll 496 (612)
.++.+.+++.++|.+.|
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 88899999999998765
No 95
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=36.98 E-value=46 Score=32.60 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=33.5
Q ss_pred CCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 427 DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 427 ~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
.+.++++..+|+.|--+..+..--.+..|+..|+|+|....|-
T Consensus 65 ~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGF 107 (272)
T ss_dssp CCHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4666888899999987765555455778899999999977764
No 96
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=36.62 E-value=1.5e+02 Score=29.39 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=57.8
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEec
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINP 442 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~P 442 (612)
.+..+|--.- | ..+++++.+. ++++++-+-+ .+.+..++.+++++ +.. ..+.++++. ..|+++..
T Consensus 6 rvgiiG~G~~--g-~~~~~~l~~~----~~~~l~av~d-~~~~~~~~~a~~~g--~~~---~~~~~~~l~~~~~D~V~i~ 72 (344)
T 3euw_A 6 RIALFGAGRI--G-HVHAANIAAN----PDLELVVIAD-PFIEGAQRLAEANG--AEA---VASPDEVFARDDIDGIVIG 72 (344)
T ss_dssp EEEEECCSHH--H-HHHHHHHHHC----TTEEEEEEEC-SSHHHHHHHHHTTT--CEE---ESSHHHHTTCSCCCEEEEC
T ss_pred EEEEECCcHH--H-HHHHHHHHhC----CCcEEEEEEC-CCHHHHHHHHHHcC--Cce---eCCHHHHhcCCCCCEEEEe
Confidence 4566664111 1 1344555443 5777765443 45566777777777 333 356778888 67988887
Q ss_pred cCCCcchHHHHHHHHcCCcEEeeCC
Q 007215 443 SISDVLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 443 S~~E~fgl~llEAMA~G~PVVas~~ 467 (612)
+......-.+.+|+..|++|++-.-
T Consensus 73 tp~~~h~~~~~~al~~gk~v~~EKP 97 (344)
T 3euw_A 73 SPTSTHVDLITRAVERGIPALCEKP 97 (344)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEECSC
T ss_pred CCchhhHHHHHHHHHcCCcEEEECC
Confidence 7665556678899999999998643
No 97
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=35.95 E-value=89 Score=31.69 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=71.0
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++.+ ..+.||||-| +...|.. --..++.+|.- ....|.|+|-+ ..=...++.++.
T Consensus 125 y~D~IviR~~~~~~~~~lA~~~~vPVINag~-~~~HPtQaLaDl~TI~E~~G~l-~glkva~vGD~--~nva~Sl~~~~~ 200 (340)
T 4ep1_A 125 YIDGIMIRTFSHADVEELAKESSIPVINGLT-DDHHPCQALADLMTIYEETNTF-KGIKLAYVGDG--NNVCHSLLLASA 200 (340)
T ss_dssp HCSEEEEECSCHHHHHHHHHHCSSCEEEEEC-SSCCHHHHHHHHHHHHHHHSCC-TTCEEEEESCC--CHHHHHHHHHHH
T ss_pred hCCEEEEecCChhHHHHHHHhCCCCEEeCCC-CCCCcHHHHHHHHHHHHHhCCC-CCCEEEEECCC--chhHHHHHHHHH
Confidence 47877766552 222322 4577889776 3455542 22234444422 24678999976 222456777887
Q ss_pred HhhccCCCeEEEEEecCCCH--HH----HHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~----l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
++ ++++.+++..... +. +++.+++.|..+.+ ..+.++.+..+||+.....
T Consensus 201 ~~-----G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~---~~d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 201 KV-----GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEI---LHNPELAVNEADFIYTDVW 256 (340)
T ss_dssp HH-----TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEE---ESCHHHHHTTCSEEEECCC
T ss_pred Hc-----CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE---ECCHHHHhCCCCEEEecCc
Confidence 77 5789999863321 22 33445577766655 3466788999998877644
No 98
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=35.79 E-value=1e+02 Score=31.00 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=57.5
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEe
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~ 441 (612)
..+..+|--.-.+ ..++++. ++.++++++-+-+. +.+..++.++++++.+.. ..+.++++.. .|+++.
T Consensus 24 ~rvgiIG~G~~g~---~~~~~l~---~~~~~~~lvav~d~-~~~~~~~~a~~~g~~~~~---~~~~~~ll~~~~~D~V~i 93 (357)
T 3ec7_A 24 LKAGIVGIGMIGS---DHLRRLA---NTVSGVEVVAVCDI-VAGRAQAALDKYAIEAKD---YNDYHDLINDKDVEVVII 93 (357)
T ss_dssp EEEEEECCSHHHH---HHHHHHH---HTCTTEEEEEEECS-STTHHHHHHHHHTCCCEE---ESSHHHHHHCTTCCEEEE
T ss_pred eeEEEECCcHHHH---HHHHHHH---hhCCCcEEEEEEeC-CHHHHHHHHHHhCCCCee---eCCHHHHhcCCCCCEEEE
Confidence 3566776421111 2344443 23367877755443 334556677777753333 2567788885 688888
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 442 PSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.+....-.-.+.+|+..|++|++-.
T Consensus 94 ~tp~~~h~~~~~~al~aGk~Vl~EK 118 (357)
T 3ec7_A 94 TASNEAHADVAVAALNANKYVFCEK 118 (357)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred cCCcHHHHHHHHHHHHCCCCEEeec
Confidence 7766555567889999999999764
No 99
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=35.72 E-value=64 Score=32.69 Aligned_cols=120 Identities=11% Similarity=0.131 Sum_probs=71.3
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.|+.-... ..++.+ ..+.||||-+ +..+|.. --..++.+|..-....+.|+|-. ...=...++.++.
T Consensus 100 ~~D~IviR~~~~~~~~~lA~~s~vPVINa~~-~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~-~~~va~Sl~~~~~ 177 (335)
T 1dxh_A 100 MYDAIEYRGFKQEIVEELAKFAGVPVFNGLT-DEYHPTQMLADVLTMREHSDKPLHDISYAYLGDA-RNNMGNSLLLIGA 177 (335)
T ss_dssp HCSEEEEECSCHHHHHHHHHHSSSCEEEEEC-SSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCC-SSHHHHHHHHHHH
T ss_pred hCCEEEEecCChhHHHHHHHhCCCCEEcCCC-CCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCC-ccchHHHHHHHHH
Confidence 46877766542 222322 4578889776 5556542 22233444311123578999986 2333456777777
Q ss_pred HhhccCCCeEEEEEecCC---CH---HHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 387 KHKNDLDGFKLDVFGNGE---DA---YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~---~~---~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
++ ++++.+++... +. +.+++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 178 ~~-----G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 233 (335)
T 1dxh_A 178 KL-----GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLT---EDPKEAVKGVDFVHTDVW 233 (335)
T ss_dssp HT-----TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred Hc-----CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhCCCCEEEeCCc
Confidence 76 67899998632 22 22344555777656554 567789999998877644
No 100
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=35.70 E-value=1.1e+02 Score=30.76 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=58.1
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEe
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~ 441 (612)
..+..+|--.- |...+++++.+. ++++++-+-+ .+.+..++.+++++... . .+.+++++. .|+++.
T Consensus 28 ~rigiIG~G~~--g~~~~~~~l~~~----~~~~l~av~d-~~~~~~~~~a~~~g~~~--~---~~~~~ll~~~~~D~V~i 95 (350)
T 3rc1_A 28 IRVGVIGCADI--AWRRALPALEAE----PLTEVTAIAS-RRWDRAKRFTERFGGEP--V---EGYPALLERDDVDAVYV 95 (350)
T ss_dssp EEEEEESCCHH--HHHTHHHHHHHC----TTEEEEEEEE-SSHHHHHHHHHHHCSEE--E---ESHHHHHTCTTCSEEEE
T ss_pred eEEEEEcCcHH--HHHHHHHHHHhC----CCeEEEEEEc-CCHHHHHHHHHHcCCCC--c---CCHHHHhcCCCCCEEEE
Confidence 45677775211 112345555543 5777764443 34566777778877432 2 567788874 688887
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 442 PSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.+....-.-.+.+|+..|++|++-.
T Consensus 96 ~tp~~~h~~~~~~al~aGk~Vl~EK 120 (350)
T 3rc1_A 96 PLPAVLHAEWIDRALRAGKHVLAEK 120 (350)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEeC
Confidence 7666555556789999999999764
No 101
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=35.68 E-value=2.4e+02 Score=28.16 Aligned_cols=92 Identities=9% Similarity=0.059 Sum_probs=58.1
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc--eEEecCCCCHHHHHhc--cceE
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHG--YKVF 439 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~--aDv~ 439 (612)
..+..+|--.- | ..+++++... ++++++.+-+ .+.+..++.+++++.. +..+ .+.+++++. .|++
T Consensus 7 ~~vgiiG~G~i--g-~~~~~~l~~~----~~~~lv~v~d-~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~D~V 75 (362)
T 1ydw_A 7 IRIGVMGCADI--A-RKVSRAIHLA----PNATISGVAS-RSLEKAKAFATANNYPESTKIH---GSYESLLEDPEIDAL 75 (362)
T ss_dssp EEEEEESCCTT--H-HHHHHHHHHC----TTEEEEEEEC-SSHHHHHHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEE
T ss_pred eEEEEECchHH--H-HHHHHHHhhC----CCcEEEEEEc-CCHHHHHHHHHHhCCCCCCeee---CCHHHHhcCCCCCEE
Confidence 34566664111 1 2345565443 5677765554 4456667778888752 3332 456788874 7988
Q ss_pred EeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 440 INPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 440 V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+..+......-.+.+|+..|++|++-.
T Consensus 76 ~i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 76 YVPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp EECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred EEcCChHHHHHHHHHHHHCCCeEEEec
Confidence 887766555566789999999999853
No 102
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=35.44 E-value=1.2e+02 Score=24.98 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=53.8
Q ss_pred EEEEecCCCH----HHHHHHHHHcCCceEE-ecCCCCHHHHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCCCC
Q 007215 397 LDVFGNGEDA----YEVQSAAKRLDLNLNF-QKGRDHADDSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHPS 469 (612)
Q Consensus 397 LvIvG~g~~~----~~l~~~~~~l~l~v~f-~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~gg 469 (612)
++++|.|-.. +.+++.+++.|+++.+ .....+.++.+..+|+++....... -..-++..+ .++||+.-+.-.
T Consensus 8 lvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~-~~~~~~~~~~~~~~pv~~I~~~~ 86 (109)
T 2l2q_A 8 LLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRF-NKKRLEEITKPKGIPIEIINTID 86 (109)
T ss_dssp EEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSS-HHHHHHHHHHHHTCCEEECCHHH
T ss_pred EEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHH-HHHHHHHHhcccCCCEEEEChHH
Confidence 4455555433 6777778888887544 4556666667788998887765422 234444443 589997643211
Q ss_pred ccccccCCcEEecCCHHHHHHHHHHHHh
Q 007215 470 NEFFRSFPNCLTYKTSEDFVARVKEALA 497 (612)
Q Consensus 470 ~~~i~~~~~g~l~~d~~~la~aI~~ll~ 497 (612)
.. ..|.+++-+.+.++++
T Consensus 87 y~----------~~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 87 YG----------TMNGEKVLQLAINAFN 104 (109)
T ss_dssp HH----------HTCHHHHHHHHHHHHH
T ss_pred hc----------cCCHHHHHHHHHHHHh
Confidence 00 1356777777776663
No 103
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=35.37 E-value=56 Score=29.53 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=54.8
Q ss_pred HHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Ccccccc--
Q 007215 409 VQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFRS-- 475 (612)
Q Consensus 409 l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~~-- 475 (612)
+++.+.++|+.+.|+..-.+.+ +.++.| | +.++|.-+--.+.++.+|+ +.++|+|=-... ..|.+..
T Consensus 62 l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRhhS 141 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHS 141 (172)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSCGGGGCC
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhcccccccc
Confidence 4444555666665554444333 333333 3 8899987777888999998 568899876433 3453333
Q ss_pred ----CCcEEec-CCHHHHHHHHHHHH
Q 007215 476 ----FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 476 ----~~~g~l~-~d~~~la~aI~~ll 496 (612)
-..|.++ --.+...-||..++
T Consensus 142 ~is~~a~GvI~G~G~~gY~lAl~al~ 167 (172)
T 3n8k_A 142 YLSPIATGVIVGLGIQGYLLALRYLA 167 (172)
T ss_dssp SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccceEEEEeCChHHHHHHHHHHH
Confidence 3467777 55666666776665
No 104
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=35.04 E-value=98 Score=30.98 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=71.8
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++.+ ..+.||||-|. ..+|.. --..++.+|.- ....|.|+|-. ..=...++.++.
T Consensus 101 ~~D~iviR~~~~~~~~~lA~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~--~rva~Sl~~~~~ 176 (315)
T 1pvv_A 101 YVDAIMARVYDHKDVEDLAKYATVPVINGLSD-FSHPCQALADYMTIWEKKGTI-KGVKVVYVGDG--NNVAHSLMIAGT 176 (315)
T ss_dssp TCSEEEEECSSHHHHHHHHHHCSSCEEEEECS-SCCHHHHHHHHHHHHHHHSCC-TTCEEEEESCC--CHHHHHHHHHHH
T ss_pred hCcEEEEecCchHHHHHHHHhCCCCEEcCCCC-CCCcHHHHHHHHHHHHHhCCc-CCcEEEEECCC--cchHHHHHHHHH
Confidence 57877766553 222322 45788897764 555542 22233444421 23578999986 333457777777
Q ss_pred HhhccCCCeEEEEEecCCCH--HHH----HHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
++ ++++.+++..... +++ ++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 177 ~~-----g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~---~d~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 177 KL-----GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELL---HDPVKAVKDADVIYTDVW 232 (315)
T ss_dssp HT-----TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred HC-----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhCCCCEEEEcce
Confidence 76 6789999964321 223 44455777555543 667789999999887654
No 105
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=34.96 E-value=59 Score=28.66 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHHH-cCCcEEeeCCC---Ccccccc
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEALA-MGKFVICADHP---SNEFFRS 475 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAMA-~G~PVVas~~g---g~~~i~~ 475 (612)
+.+++.++++|+.+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|++ .++|+|=-... ..|.+..
T Consensus 34 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 113 (146)
T 1h05_A 34 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRR 113 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 456666777787777766655555 445444 3 88999877778899999974 68899876443 2444333
Q ss_pred ------CCcEEec-CCHHHHHHHHHHHH
Q 007215 476 ------FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 476 ------~~~g~l~-~d~~~la~aI~~ll 496 (612)
-..|.++ --.+...-|+..++
T Consensus 114 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 141 (146)
T 1h05_A 114 HSYLSPIATGVIVGLGIQGYLLALRYLA 141 (146)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHH
Confidence 3467777 45666666676665
No 106
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=34.93 E-value=1.8e+02 Score=27.70 Aligned_cols=63 Identities=10% Similarity=-0.110 Sum_probs=33.6
Q ss_pred cceEE-eccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHhC
Q 007215 436 YKVFI-NPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALAN 498 (612)
Q Consensus 436 aDv~V-~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~~ 498 (612)
.|.+| .|...+...-.+-++...|+|||..+......-.......+. ++.+.-..+...+++.
T Consensus 62 vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~ 126 (297)
T 3rot_A 62 PSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALEL 126 (297)
T ss_dssp CSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHh
Confidence 46444 455445555556677889999999876542210001122333 5555555555555543
No 107
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=34.93 E-value=1.8e+02 Score=23.63 Aligned_cols=105 Identities=9% Similarity=0.040 Sum_probs=63.6
Q ss_pred CeEEEEEecCCCH-HHHHHHHHH-cCCc-eEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHHc-----CCcE
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKR-LDLN-LNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALAM-----GKFV 462 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~-l~l~-v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA~-----G~PV 462 (612)
..+++|+.+.+.. ..+.....+ .+.. +.......+..+.+.. .|+++.-.. .+.-|+.+++.+.. .+||
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 4678888764443 556666666 6766 5544443333344443 476665433 34457777877754 5677
Q ss_pred Eee-CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 463 ICA-DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 463 Vas-~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
|.. .....+ .+..+..+++. -+.+++.++|..++..
T Consensus 88 i~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 764 333322 23345667776 7999999999999854
No 108
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.93 E-value=45 Score=31.23 Aligned_cols=99 Identities=12% Similarity=-0.041 Sum_probs=59.8
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHH--HHHhccceEEeccCCCc
Q 007215 374 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHAD--DSLHGYKVFINPSISDV 447 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~--~ll~~aDv~V~PS~~E~ 447 (612)
-.|=.+.|.+|+.-+... .+-+++++|..... +.+.+.++..|-. -+|+|+.-... +-+..-|+.+.....+
T Consensus 45 L~kT~~~L~~A~~~i~~~-~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~- 122 (202)
T 3j20_B 45 VRKTDERLKVAGKFLAKF-EPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRA- 122 (202)
T ss_dssp HHHHHHHHHHHHHHHHHS-CSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHhh-CCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeCCcc-
Confidence 345566777777666554 34568889987665 4555666665543 45777654333 2223346666553321
Q ss_pred chHHHHHHHHcCCcEEee-CCCCccccc
Q 007215 448 LCTATAEALAMGKFVICA-DHPSNEFFR 474 (612)
Q Consensus 448 fgl~llEAMA~G~PVVas-~~gg~~~i~ 474 (612)
=-.++.||...|.|+|+- |.......+
T Consensus 123 d~~ai~EA~~l~IP~Ial~DTn~~p~~V 150 (202)
T 3j20_B 123 DHQAMREAVEIGIPIVALVDTENLLSYV 150 (202)
T ss_dssp SHHHHHHHHHHTCCEEEEECTTCCCTTC
T ss_pred chHHHHHHHHcCCCEEEEEcCCCCcccc
Confidence 245789999999999986 444433333
No 109
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=34.80 E-value=2.5e+02 Score=30.17 Aligned_cols=207 Identities=11% Similarity=0.047 Sum_probs=102.2
Q ss_pred CCccEEEE------CCCchhHHhhhhHHHhhhCC-CEEEEEeCCcHhHHHHhccchh-HHHHHHHHHHHH-HHhcCCeEE
Q 007215 250 KDADIAIL------EEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGAL-QAFFVKHINNWV-TRAYCDKVL 320 (612)
Q Consensus 250 ~~pDVVh~------~~p~~l~~~~~~~~~~~~~~-pvv~~~H~~~~~~~~~~~~~~~-~~~~~~~i~~~~-~~~~ad~vI 320 (612)
.++||+++ .+-+.+.++...+.+....+ --+.++|..+..|.... +.+ .++....+..+. ....+|.++
T Consensus 134 ~~~dv~i~eiggtvgdies~pf~ea~rq~~~~~g~~n~~~ih~tlvp~~~~~--ge~ktkptqhsv~~Lrs~GIqPdilv 211 (535)
T 3nva_A 134 NNAEITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIALVEYLSVT--GELKTKPLQHSVQELRRIGIQPDFIV 211 (535)
T ss_dssp HTCSEEEEEECSCTTSGGGHHHHHHHHHHHHHHCTTTEEEEEEEECCBCTTT--SSBCCHHHHHHHHHHHHHTCCCSEEE
T ss_pred CCCCEEEEEeCCccchhcccHHHHHHHHHHHHhCCCCEEEEEeeccceecCC--CcccCCchHHHHHHHHhCCCCCCEEE
Confidence 58999999 23333444432223333334 45666776554444211 111 123333333322 223489999
Q ss_pred EeChhh-----hc-------cCCCcEEEeCCCCCCCCCCC------ccchhhhhhccCCCCcEEEEEeccCCccCHHHHH
Q 007215 321 RLSAAT-----QD-------LPKSVICNVHGVNPKFLQIG------EKVATDREQGQQAFSKGAYFLGKMVWAKGYRELI 382 (612)
Q Consensus 321 ~~S~~~-----~~-------~~~~~i~vinGVd~~~f~~~------~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li 382 (612)
|-|+.. ++ ++++.+.-++++|+-+.-|. -.....++++++...+ ....+..++
T Consensus 212 cRs~~~l~~~~r~KiaLfc~V~~~~VI~i~DvdtiY~vpl~L~~qGl~~~~~~~l~l~~~~~---------~~~~w~~~~ 282 (535)
T 3nva_A 212 GRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDRQV---------DLTDWISFV 282 (535)
T ss_dssp EEESSCCCHHHHHHHHHHTTCCGGGEEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCCCCCC---------CCHHHHHHH
T ss_pred EecCCCCCHHHHHhhhhhcCCChhceEecCCCChHHHhHHHHHHCCcHHHHHHHcCCCCCCC---------CHHHHHHHH
Confidence 888742 11 44566666678876544332 1112233444432110 112233444
Q ss_pred HHHHHhhccCCCeEEEEEecCCCH--------HHHHHHHHHcCCc--eEEecCC--CCH----HHHHhccceEEeccCC-
Q 007215 383 DLLAKHKNDLDGFKLDVFGNGEDA--------YEVQSAAKRLDLN--LNFQKGR--DHA----DDSLHGYKVFINPSIS- 445 (612)
Q Consensus 383 ~A~~~l~~~~~~~~LvIvG~g~~~--------~~l~~~~~~l~l~--v~f~g~~--~~~----~~ll~~aDv~V~PS~~- 445 (612)
+.+... .....+++.++|.-.+. +.|......++.. +.+...- .+. .+.+..+|.+|+|.-.
T Consensus 283 ~~~~~~-~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G 361 (535)
T 3nva_A 283 NNIKGI-NSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFG 361 (535)
T ss_dssp HHHHTT-TCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCS
T ss_pred HHhhcc-CCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCC
Confidence 443310 22235899999975322 4455445555544 4444332 111 3568889988888522
Q ss_pred ----CcchHHHHHHHHcCCcEEeeCCC
Q 007215 446 ----DVLCTATAEALAMGKFVICADHP 468 (612)
Q Consensus 446 ----E~fgl~llEAMA~G~PVVas~~g 468 (612)
++.--.+-+|...|+|++..-.|
T Consensus 362 ~~~~~g~i~~ir~a~~~~~PiLGIClG 388 (535)
T 3nva_A 362 SRGAEGKIKAIKYAREHNIPFLGICFG 388 (535)
T ss_dssp STTHHHHHHHHHHHHHHTCCEEEETHH
T ss_pred CccHHHHHHHHHHHHHcCCcEEEECcc
Confidence 11122345666789999876443
No 110
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=34.80 E-value=1.8e+02 Score=23.42 Aligned_cols=104 Identities=7% Similarity=0.018 Sum_probs=60.5
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHHc-----CCcEEe
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALAM-----GKFVIC 464 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA~-----G~PVVa 464 (612)
..+++|+.+.+.. ..+.+...+.+..+.......+.-+.+.. .|+++.-.. .+.-|+.+++.+.. ..|||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEE
Confidence 4567777754432 45666666666555443332222234433 366665433 35567788887753 345565
Q ss_pred eCCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 465 ADHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 465 s~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
+.....+ .+..+..+++. -+.+++.++|.+...
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 86 VSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp ECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC
T ss_pred EeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcC
Confidence 5433322 23346677777 799999999999883
No 111
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=34.51 E-value=93 Score=31.79 Aligned_cols=119 Identities=14% Similarity=0.104 Sum_probs=71.9
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.|+.-... ..++.+ ..+.||||-+ +...|.. .-..++.+|.- ....|.|+|-. ...=...++.++.
T Consensus 122 ~~D~IviR~~~~~~~~~lA~~s~vPVINa~~-~~~HPtQaLaDl~Ti~E~~g~l-~gl~va~vGD~-~~rva~Sl~~~~~ 198 (359)
T 2w37_A 122 MFDGIEFRGFKQSDAEILARDSGVPVWNGLT-DEWHPTQMLADFMTVKENFGKL-QGLTLTFMGDG-RNNVANSLLVTGA 198 (359)
T ss_dssp HCSEEEEESSCHHHHHHHHHHSSSCEEEEEC-SSCCHHHHHHHHHHHHHHHSCC-TTCEEEEESCT-TSHHHHHHHHHHH
T ss_pred hcCEEEEecCChHHHHHHHHhCCCCEEcCCC-CCCCccHHHHHHHHHHHHhCCc-CCeEEEEECCC-ccchHHHHHHHHH
Confidence 46877766542 222322 4578889776 5556542 22233444421 23678999986 2333457777777
Q ss_pred HhhccCCCeEEEEEecCC---CH---HHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 387 KHKNDLDGFKLDVFGNGE---DA---YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~---~~---~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
++ ++++.+++... +. +.+++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 199 ~l-----G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 199 IL-----GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVIT---DDLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp HH-----TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCS
T ss_pred Hc-----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhcCCCEEEEccc
Confidence 76 57899998532 22 22344555777666654 567789999998877654
No 112
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=34.25 E-value=39 Score=30.87 Aligned_cols=64 Identities=25% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHhccceEEe-ccCCCcchH--HHHHHHHcCCcEEeeCCCC-cc-cccc-CCcEEec-CCHHHHHHHHHHHHh
Q 007215 431 DSLHGYKVFIN-PSISDVLCT--ATAEALAMGKFVICADHPS-NE-FFRS-FPNCLTY-KTSEDFVARVKEALA 497 (612)
Q Consensus 431 ~ll~~aDv~V~-PS~~E~fgl--~llEAMA~G~PVVas~~gg-~~-~i~~-~~~g~l~-~d~~~la~aI~~ll~ 497 (612)
-+...+|.+|. |. ++|+ .+.||+..++||++-+.-+ .+ ++.. ....+.+ +|++++.+.|.+.+.
T Consensus 103 ~m~~~sda~IvlpG---g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 103 INALSSNVLVAVGM---GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp CCGGGCSEEEEESC---CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEecC---CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHH
Confidence 34455675554 43 4564 5889999999999998633 11 2222 2334444 999999999998874
No 113
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=34.20 E-value=1.6e+02 Score=29.27 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=48.7
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 392 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 392 ~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.++++++-+-+ .+.+..++.+++++..-. ..+.++++. ..|+++..+......-.+.+|+..|++|++-.
T Consensus 24 ~~~~~l~av~d-~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EK 95 (344)
T 3ezy_A 24 IDDAILYAISD-VREDRLREMKEKLGVEKA----YKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEK 95 (344)
T ss_dssp STTEEEEEEEC-SCHHHHHHHHHHHTCSEE----ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHhCCCce----eCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEEC
Confidence 36777764443 445666777777774311 356778888 67988887766555556789999999999764
No 114
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=33.85 E-value=1.3e+02 Score=28.57 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHc
Q 007215 379 RELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAM 458 (612)
Q Consensus 379 ~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~ 458 (612)
-.+++|+.+.++.. -++-++|.......++.+.+-+++++.++...+..+ . --.+.++.+-
T Consensus 93 ~Dil~aL~~a~~~~--~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee-~----------------~~~i~~l~~~ 153 (225)
T 2pju_A 93 YDVLQFLAKAGKLT--SSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED-A----------------RGQINELKAN 153 (225)
T ss_dssp HHHHHHHHHTTCTT--SCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHH-H----------------HHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC--CcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHH-H----------------HHHHHHHHHC
Confidence 45678888876643 368888887777778888888888876655444333 1 1245566777
Q ss_pred CCcEEeeCCCCcccccc-CCcEEecCCHHHHHHHHHHHH
Q 007215 459 GKFVICADHPSNEFFRS-FPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 459 G~PVVas~~gg~~~i~~-~~~g~l~~d~~~la~aI~~ll 496 (612)
|.=||.-+.-..+.-.. |-++++..+.+++.+++.+++
T Consensus 154 G~~vVVG~~~~~~~A~~~Gl~~vlI~s~eSI~~Ai~eA~ 192 (225)
T 2pju_A 154 GTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL 192 (225)
T ss_dssp TCCEEEESHHHHHHHHHTTSEEEESSCHHHHHHHHHHHH
T ss_pred CCCEEECCHHHHHHHHHcCCcEEEECCHHHHHHHHHHHH
Confidence 77776654433333222 445555545788888888776
No 115
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=33.09 E-value=2.6e+02 Score=28.00 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=59.4
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEe
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~ 441 (612)
..+..+|-- .-+...++.++.. ++++++-+-+ .+.+..++.+++++.. . ...+.+++++. .|+++.
T Consensus 27 irvgiiG~G--~~~~~~~~~~~~~-----~~~~lvav~d-~~~~~a~~~a~~~~~~-~---~~~~~~~ll~~~~vD~V~I 94 (361)
T 3u3x_A 27 LRFAAVGLN--HNHIYGQVNCLLR-----AGARLAGFHE-KDDALAAEFSAVYADA-R---RIATAEEILEDENIGLIVS 94 (361)
T ss_dssp CEEEEECCC--STTHHHHHHHHHH-----TTCEEEEEEC-SCHHHHHHHHHHSSSC-C---EESCHHHHHTCTTCCEEEE
T ss_pred cEEEEECcC--HHHHHHHHHHhhc-----CCcEEEEEEc-CCHHHHHHHHHHcCCC-c---ccCCHHHHhcCCCCCEEEE
Confidence 356777742 2344445555542 5777776654 4556677778887632 1 23577788886 688877
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 442 PSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.+....-.-.+.+|+.+|++|++-.
T Consensus 95 ~tp~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 95 AAVSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred eCChHHHHHHHHHHHHCCCeEEEeC
Confidence 7655444556789999999999864
No 116
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=33.09 E-value=57 Score=32.62 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=64.9
Q ss_pred CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC--
Q 007215 332 SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED-- 405 (612)
Q Consensus 332 ~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~-- 405 (612)
..+.||||-|-+..+|.. --..++.+|.- ....|.|+|-+....=...++.++.++ ++++.+++....
T Consensus 121 ~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l-~gl~va~vGD~~~~rva~Sl~~~~~~~-----G~~v~~~~P~~~~~ 194 (308)
T 1ml4_A 121 AEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRI-DGLKIGLLGDLKYGRTVHSLAEALTFY-----DVELYLISPELLRM 194 (308)
T ss_dssp CSSCEEEEEETTSCCHHHHHHHHHHHHHHSSCS-SSEEEEEESCTTTCHHHHHHHHHGGGS-----CEEEEEECCGGGCC
T ss_pred CCCCEEeCccCCccCcHHHHHHHHHHHHHhCCC-CCeEEEEeCCCCcCchHHHHHHHHHHC-----CCEEEEECCccccC
Confidence 446788977755556542 22233444321 236789999764333456677776665 688999996322
Q ss_pred HHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 406 AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 406 ~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
.+++.+.+++.|..+.+. .+.++.+..+||+.....
T Consensus 195 ~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvyt~~~ 230 (308)
T 1ml4_A 195 PRHIVEELREKGMKVVET---TTLEDVIGKLDVLYVTRI 230 (308)
T ss_dssp CHHHHHHHHHTTCCEEEE---SCTHHHHTTCSEEEECCC
T ss_pred CHHHHHHHHHcCCeEEEE---cCHHHHhcCCCEEEECCc
Confidence 244666677777665543 556688999998877654
No 117
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=32.97 E-value=44 Score=32.16 Aligned_cols=96 Identities=13% Similarity=-0.074 Sum_probs=56.2
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc-e---EEecCCCCHH--HHHhccceEEeccCCCc
Q 007215 375 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN-L---NFQKGRDHAD--DSLHGYKVFINPSISDV 447 (612)
Q Consensus 375 ~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~-v---~f~g~~~~~~--~ll~~aDv~V~PS~~E~ 447 (612)
.|=...|.+|+.-+..-..+-+++++|..... ..+.+.++..|-. + +|+|+.-... ..+..-|+++..... .
T Consensus 47 ~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~-~ 125 (241)
T 2xzm_B 47 EETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPR-S 125 (241)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTT-T
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCC-c
Confidence 34455666666555442123567899976544 3455556655644 4 5777654443 223334666655432 2
Q ss_pred chHHHHHHHHcCCcEEee-CCCCcc
Q 007215 448 LCTATAEALAMGKFVICA-DHPSNE 471 (612)
Q Consensus 448 fgl~llEAMA~G~PVVas-~~gg~~ 471 (612)
=-.++.||.-.|.|||+- |.....
T Consensus 126 e~~ai~EA~~l~IPvIalvDTn~~p 150 (241)
T 2xzm_B 126 DFQAIKEASYVNIPVIALCDSDSPL 150 (241)
T ss_dssp THHHHHHHTTTTCCEEECCCSSSCC
T ss_pred chHHHHHHHHhCCCEEEEecCCCCc
Confidence 246899999999999997 443433
No 118
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=32.96 E-value=59 Score=28.89 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Ccccccc-
Q 007215 408 EVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFRS- 475 (612)
Q Consensus 408 ~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~~- 475 (612)
.+++.+.++|+.+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|+ +.++|+|=-... ..|.+..
T Consensus 40 ~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~FRh~ 119 (153)
T 3lwz_A 40 QLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREPFRHH 119 (153)
T ss_dssp HHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCGGGGC
T ss_pred HHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccchhhhc
Confidence 34445556665566555444444 444433 3 8889987777788999987 578999976444 3444432
Q ss_pred -----CCcEEec-CCHHHHHHHHHHHH
Q 007215 476 -----FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 476 -----~~~g~l~-~d~~~la~aI~~ll 496 (612)
-..|.++ --.+...-||..++
T Consensus 120 S~~s~~a~GvI~G~G~~gY~lAl~~~~ 146 (153)
T 3lwz_A 120 SYLSDIAVGVICGLGADGYNFALQAAV 146 (153)
T ss_dssp CSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccceEEEEecChhHHHHHHHHHH
Confidence 3457777 44555555555544
No 119
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=32.81 E-value=1.6e+02 Score=29.36 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=63.6
Q ss_pred CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-
Q 007215 332 SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA- 406 (612)
Q Consensus 332 ~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~- 406 (612)
..+.||||-+ +..+|.. --..++.+|.- ....|.|+|-. ...=...++.++.++ ++++.+++.....
T Consensus 115 ~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~-~~rva~Sl~~~~~~~-----g~~v~~~~P~~~~~ 186 (307)
T 2i6u_A 115 ATVPVINALS-DEFHPCQVLADLQTIAERKGAL-RGLRLSYFGDG-ANNMAHSLLLGGVTA-----GIHVTVAAPEGFLP 186 (307)
T ss_dssp CSSCEEESCC-SSCCHHHHHHHHHHHHHHHSCC-TTCEEEEESCT-TSHHHHHHHHHHHHT-----TCEEEEECCTTSCC
T ss_pred CCCCEEcCCC-CCcCccHHHHHHHHHHHHhCCc-CCeEEEEECCC-CcCcHHHHHHHHHHC-----CCEEEEECCccccC
Confidence 4577889765 5556542 22233444421 23578999986 333346777777776 6889999964321
Q ss_pred -HHH----HHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 407 -YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 407 -~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
+++ ++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 187 ~~~~~~~~~~~a~~~G~~~~~~---~d~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 187 DPSVRAAAERRAQDTGASVTVT---ADAHAAAAGADVLVTDTW 226 (307)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCeEEEE---ECHHHHhcCCCEEEecce
Confidence 223 44455777666554 567789999998887544
No 120
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=32.71 E-value=1.2e+02 Score=29.94 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHH-hccceEEeccCCCcchHHHHHHHHcC
Q 007215 381 LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSL-HGYKVFINPSISDVLCTATAEALAMG 459 (612)
Q Consensus 381 Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll-~~aDv~V~PS~~E~fgl~llEAMA~G 459 (612)
+++++.+. ++++++.+-+ .+.+..++.+++++.. .. ..+.++++ ...|+++..+......-.+.+|+..|
T Consensus 16 ~~~~l~~~----~~~~~~~v~d-~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~g 86 (325)
T 2ho3_A 16 FIEAAHTS----GEYQLVAIYS-RKLETAATFASRYQNI-QL---FDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAG 86 (325)
T ss_dssp HHHHHHHT----TSEEEEEEEC-SSHHHHHHHGGGSSSC-EE---ESCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTT
T ss_pred HHHHHHhC----CCeEEEEEEe-CCHHHHHHHHHHcCCC-eE---eCCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcC
Confidence 45555433 5677764443 4455666667776632 22 24567788 56798888776655566778999999
Q ss_pred CcEEeeC
Q 007215 460 KFVICAD 466 (612)
Q Consensus 460 ~PVVas~ 466 (612)
++|++-.
T Consensus 87 k~V~~EK 93 (325)
T 2ho3_A 87 KHVILEK 93 (325)
T ss_dssp CEEEEES
T ss_pred CcEEEec
Confidence 9999864
No 121
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=32.38 E-value=41 Score=31.29 Aligned_cols=63 Identities=19% Similarity=0.069 Sum_probs=40.3
Q ss_pred HHHhccceEEeccCCCcchH--HHHHHHHcCCcEEeeCCCC-c-ccc---------cc--CCcEEec-CCHHHHHHHHHH
Q 007215 431 DSLHGYKVFINPSISDVLCT--ATAEALAMGKFVICADHPS-N-EFF---------RS--FPNCLTY-KTSEDFVARVKE 494 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fgl--~llEAMA~G~PVVas~~gg-~-~~i---------~~--~~~g~l~-~d~~~la~aI~~ 494 (612)
-+...+|+||... -++|+ .+.||+..|+||++-+..+ - +.+ ++ ....+.+ +|++++.+.|.+
T Consensus 114 ~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~ 191 (195)
T 1rcu_A 114 VLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191 (195)
T ss_dssp HHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHT
T ss_pred HHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 5556678666542 34664 5889999999999997544 2 222 11 1123444 999999988765
Q ss_pred H
Q 007215 495 A 495 (612)
Q Consensus 495 l 495 (612)
.
T Consensus 192 ~ 192 (195)
T 1rcu_A 192 I 192 (195)
T ss_dssp C
T ss_pred H
Confidence 4
No 122
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.91 E-value=2e+02 Score=23.16 Aligned_cols=103 Identities=10% Similarity=0.010 Sum_probs=60.6
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCC--ceEEecCCCCHHHHHhc---------cceEEeccC-CCcchHHHHHHHH----
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDL--NLNFQKGRDHADDSLHG---------YKVFINPSI-SDVLCTATAEALA---- 457 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l--~v~f~g~~~~~~~ll~~---------aDv~V~PS~-~E~fgl~llEAMA---- 457 (612)
.+++|+.+.+.. ..+.+...+.+. .+.......+.-+.+.. .|+++.-.. .+.-|+.+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 467777754432 556666676665 34444433333355543 577765433 3445677777765
Q ss_pred -cCCcEEee-CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 458 -MGKFVICA-DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 458 -~G~PVVas-~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
..+|||.. .....+ .+..+..+++. -+.+++.++|..++.
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 45777765 333322 23335667776 689999999988873
No 123
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.71 E-value=1.1e+02 Score=28.05 Aligned_cols=99 Identities=9% Similarity=-0.007 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHc
Q 007215 379 RELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAM 458 (612)
Q Consensus 379 ~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~ 458 (612)
-.+++|+.+.++.. -++-++|.......++.+.+-+++++.++...+..+ .--.+.++.+-
T Consensus 81 ~Dil~al~~a~~~~--~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e-----------------~~~~i~~l~~~ 141 (196)
T 2q5c_A 81 FDTMRAVYNAKRFG--NELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDE-----------------ITTLISKVKTE 141 (196)
T ss_dssp HHHHHHHHHHGGGC--SEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGG-----------------HHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhC--CcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHH-----------------HHHHHHHHHHC
Confidence 35577777776643 277777876665566666666777655544333322 11245566666
Q ss_pred CCcEEeeCCCCcccccc-CCcEEec-CCHHHHHHHHHHHH
Q 007215 459 GKFVICADHPSNEFFRS-FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 459 G~PVVas~~gg~~~i~~-~~~g~l~-~d~~~la~aI~~ll 496 (612)
|.=+|.-+....+.-.. |-++.+. .+.+++.+|+.+++
T Consensus 142 G~~vvVG~~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 142 NIKIVVSGKTVTDEAIKQGLYGETINSGEESLRRAIEEAL 181 (196)
T ss_dssp TCCEEEECHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHH
T ss_pred CCeEEECCHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHH
Confidence 76666654333332222 3445555 56888888888776
No 124
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.43 E-value=1.9e+02 Score=24.42 Aligned_cols=102 Identities=7% Similarity=0.011 Sum_probs=53.3
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCceE-EecCCCCHHHHHh----ccceEEeccC-CCcchHHHHHHHH---cCCcEEe
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLNLN-FQKGRDHADDSLH----GYKVFINPSI-SDVLCTATAEALA---MGKFVIC 464 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~v~-f~g~~~~~~~ll~----~aDv~V~PS~-~E~fgl~llEAMA---~G~PVVa 464 (612)
.+++|+.+.+.. ..+.+..++.|..+. ......+.-+.+. ..|+++.-.. .+.-|+.+++.+. ..+|||.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ 116 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIM 116 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEE
Confidence 455565543322 344444555554432 2222222212332 3466655432 3445666666553 4677776
Q ss_pred eC-CCCcc----ccccCCcEEec--CCHHHHHHHHHHHH
Q 007215 465 AD-HPSNE----FFRSFPNCLTY--KTSEDFVARVKEAL 496 (612)
Q Consensus 465 s~-~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll 496 (612)
.. ....+ .+..+..+++. -+.++|.++|.+++
T Consensus 117 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 117 ISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred EeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 53 33322 23346677777 78999999999887
No 125
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=31.17 E-value=1.3e+02 Score=30.26 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=62.0
Q ss_pred cEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH--
Q 007215 333 VICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-- 406 (612)
Q Consensus 333 ~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-- 406 (612)
.+.||||-| +...|.. --..++.+|.- ....|.|+|-+ ..=...++.++..+ ++++.+++.....
T Consensus 125 ~vPVINag~-~~~HPtQaLaDl~Ti~e~~g~l-~glkva~vGD~--~rva~Sl~~~~~~~-----G~~v~~~~P~~~~~~ 195 (323)
T 3gd5_A 125 GIPVINALT-DHEHPCQVVADLLTIRENFGRL-AGLKLAYVGDG--NNVAHSLLLGCAKV-----GMSIAVATPEGFTPD 195 (323)
T ss_dssp CSCEEEEEC-SSCCHHHHHHHHHHHHHHHSCC-TTCEEEEESCC--CHHHHHHHHHHHHH-----TCEEEEECCTTCCCC
T ss_pred CCCEEeCCC-CCCCcHHHHHHHHHHHHHhCCC-CCCEEEEECCC--CcHHHHHHHHHHHc-----CCEEEEECCCcccCC
Confidence 466889877 5556542 22234444422 24678899977 33356777888776 6789999863321
Q ss_pred HH----HHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 407 YE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 407 ~~----l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
+. .++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 196 ~~~~~~~~~~a~~~g~~v~~~---~d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 196 PAVSARASEIAGRTGAEVQIL---RDPFEAARGAHILYTDVW 234 (323)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHHHcCCeEEEE---CCHHHHhcCCCEEEEece
Confidence 22 333445567666553 466788999998877643
No 126
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=30.83 E-value=1.6e+02 Score=30.38 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc-------cceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG-------YKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~-------aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
++++++..-...+.+..++.++++++.. .....+.+++++. .|+++..+....-.-.+.+|+..|++|++-
T Consensus 63 ~~~~lva~v~d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~E 140 (417)
T 3v5n_A 63 DHYELVAGALSSTPEKAEASGRELGLDP--SRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVICD 140 (417)
T ss_dssp SCEEEEEEECCSSHHHHHHHHHHHTCCG--GGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEEEE
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHcCCCc--ccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence 4566653112345677778888887531 0234577788887 788888776666566788999999999987
Q ss_pred CC
Q 007215 466 DH 467 (612)
Q Consensus 466 ~~ 467 (612)
.-
T Consensus 141 KP 142 (417)
T 3v5n_A 141 KP 142 (417)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 127
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=30.70 E-value=1.8e+02 Score=23.70 Aligned_cols=104 Identities=7% Similarity=-0.034 Sum_probs=60.9
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHHc---CCcEEeeC
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALAM---GKFVICAD 466 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA~---G~PVVas~ 466 (612)
..+++|+.+.+.. ..+.+...+.+..+.......+..+.+.. .|+++.-.. .+.-|+.+++.+.. .+|||..-
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 86 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVIS 86 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 4667888754433 45555566555445444433333233333 476666433 34557777776553 67777653
Q ss_pred CC-Cc----cccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 467 HP-SN----EFFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 467 ~g-g~----~~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
.. .. +.+..+..+++. -+.+++.++|.++++
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 87 AFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 33 22 233346677777 699999999999984
No 128
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=30.65 E-value=86 Score=29.69 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=63.8
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
..++.+|. | +.....+..+.+. +..+.++-... .+++++++++.+ +.+....-. ++.+..+|+++...
T Consensus 32 k~VLVVGg-----G-~va~~ka~~Ll~~--GA~VtVvap~~-~~~l~~l~~~~~--i~~i~~~~~-~~dL~~adLVIaAT 99 (223)
T 3dfz_A 32 RSVLVVGG-----G-TIATRRIKGFLQE--GAAITVVAPTV-SAEINEWEAKGQ--LRVKRKKVG-EEDLLNVFFIVVAT 99 (223)
T ss_dssp CCEEEECC-----S-HHHHHHHHHHGGG--CCCEEEECSSC-CHHHHHHHHTTS--CEEECSCCC-GGGSSSCSEEEECC
T ss_pred CEEEEECC-----C-HHHHHHHHHHHHC--CCEEEEECCCC-CHHHHHHHHcCC--cEEEECCCC-HhHhCCCCEEEECC
Confidence 34556664 2 3444555556554 34566665433 356777776544 455433222 23567888777665
Q ss_pred CCCcchHHHHHHHHcCCcEEeeCCCC-ccccc----c-CCcEEec---CCHHHHHHHHHHHH
Q 007215 444 ISDVLCTATAEALAMGKFVICADHPS-NEFFR----S-FPNCLTY---KTSEDFVARVKEAL 496 (612)
Q Consensus 444 ~~E~fgl~llEAMA~G~PVVas~~gg-~~~i~----~-~~~g~l~---~d~~~la~aI~~ll 496 (612)
-.+.....+.++...|+||-..|.+. .+++. + ++--+-+ +..-.+|..|++-+
T Consensus 100 ~d~~~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~i 161 (223)
T 3dfz_A 100 NDQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDL 161 (223)
T ss_dssp CCTHHHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHH
Confidence 55555555555555899999988874 33222 2 2222222 44566777777666
No 129
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.33 E-value=2.2e+02 Score=23.09 Aligned_cols=104 Identities=7% Similarity=-0.104 Sum_probs=57.9
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-C-----CcchHHHHHHHH---cCCcE
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-S-----DVLCTATAEALA---MGKFV 462 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~-----E~fgl~llEAMA---~G~PV 462 (612)
.+++|+.+.+.. ..+.+...+.+..+.......+..+.+.. .|+++.-.. . +.-|+.+++.+. ..+||
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~i 83 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPV 83 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCE
Confidence 567777754432 44555556555555433332222234433 366665432 2 334666666654 46787
Q ss_pred EeeC-CCCc----cccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 463 ICAD-HPSN----EFFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 463 Vas~-~gg~----~~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
|..- .... ..+..+..+++. -+.+++.++|..++..
T Consensus 84 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 84 VLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp EEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 7653 3322 223345667776 7999999999999843
No 130
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=30.33 E-value=1.8e+02 Score=28.72 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=47.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+++++-+-+ .+.+..++.+++++..-. ..+.+++++ ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 28 ~~~l~av~d-~~~~~a~~~a~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EK 97 (334)
T 3ohs_X 28 EHQVVAVAA-RDLSRAKEFAQKHDIPKA----YGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEK 97 (334)
T ss_dssp TEEEEEEEC-SSHHHHHHHHHHHTCSCE----ESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CeEEEEEEc-CCHHHHHHHHHHcCCCcc----cCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEC
Confidence 456665554 455667777888875422 356778888 47888887665555556789999999999874
No 131
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=30.32 E-value=1.3e+02 Score=30.01 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=58.2
Q ss_pred CcEEEEEecc-CCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceE
Q 007215 363 SKGAYFLGKM-VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVF 439 (612)
Q Consensus 363 ~~~il~vGrl-~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~ 439 (612)
+..+..+|-- .-.+ ..++++..+ .++++++-+-+ .+.+..++.+++++.. .. ..+.+++++. .|++
T Consensus 18 ~irvgiIG~G~~~g~---~~~~~l~~~---~~~~~lvav~d-~~~~~~~~~a~~~~~~-~~---~~~~~~ll~~~~vD~V 86 (340)
T 1zh8_A 18 KIRLGIVGCGIAARE---LHLPALKNL---SHLFEITAVTS-RTRSHAEEFAKMVGNP-AV---FDSYEELLESGLVDAV 86 (340)
T ss_dssp CEEEEEECCSHHHHH---THHHHHHTT---TTTEEEEEEEC-SSHHHHHHHHHHHSSC-EE---ESCHHHHHHSSCCSEE
T ss_pred ceeEEEEecCHHHHH---HHHHHHHhC---CCceEEEEEEc-CCHHHHHHHHHHhCCC-cc---cCCHHHHhcCCCCCEE
Confidence 4567777742 1111 234454432 25677765554 4556677777887742 22 3567788875 6888
Q ss_pred EeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 440 INPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 440 V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+..+....-.-.+.+|+..|++|++-.
T Consensus 87 ~i~tp~~~H~~~~~~al~aGkhVl~EK 113 (340)
T 1zh8_A 87 DLTLPVELNLPFIEKALRKGVHVICEK 113 (340)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred EEeCCchHHHHHHHHHHHCCCcEEEeC
Confidence 777665555556789999999999864
No 132
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=30.15 E-value=2e+02 Score=22.64 Aligned_cols=102 Identities=7% Similarity=0.036 Sum_probs=58.7
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEecc-CC-CcchHHHHHHHH-----cCCcEEe
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPS-IS-DVLCTATAEALA-----MGKFVIC 464 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS-~~-E~fgl~llEAMA-----~G~PVVa 464 (612)
.+++++.+.+.. ..+.+..++.|..+.......+.-+.+.. .|+++.-. .. +.-|..+++.+. ..+|||.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 357777654432 45556666666555433322222233332 47666532 22 345677777764 4689988
Q ss_pred eCCCC-cc----ccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 465 ADHPS-NE----FFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 465 s~~gg-~~----~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
. ... .+ .+..+..+++. -+.+++.++|..++.
T Consensus 86 ~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 86 I-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp E-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred E-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 8 332 22 22335566766 799999999999884
No 133
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=30.11 E-value=2.4e+02 Score=23.45 Aligned_cols=103 Identities=8% Similarity=0.052 Sum_probs=61.7
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCC--ceEEecCCCCHHHHHh-----------ccceEEecc-CCCcchHHHHHHHHc
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDL--NLNFQKGRDHADDSLH-----------GYKVFINPS-ISDVLCTATAEALAM 458 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l--~v~f~g~~~~~~~ll~-----------~aDv~V~PS-~~E~fgl~llEAMA~ 458 (612)
..+++|+.+.+.. ..+.+...+.+. .+.......+.-+.+. ..|+++.-. ..+.-|+.+++.+..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 3567888754433 566667777776 3544443333335552 357666543 335567788887764
Q ss_pred -----CCcEEee-CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHH
Q 007215 459 -----GKFVICA-DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEAL 496 (612)
Q Consensus 459 -----G~PVVas-~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll 496 (612)
.+|||.. .....+ .+..+..+++. -++++|.++|.++.
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 5677765 333322 23346667777 68899998888875
No 134
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=30.11 E-value=57 Score=29.37 Aligned_cols=59 Identities=20% Similarity=0.140 Sum_probs=42.2
Q ss_pred eEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Ccccccc------CCcEEec-CCHHHHHHHHHHHH
Q 007215 438 VFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFRS------FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~~------~~~g~l~-~d~~~la~aI~~ll 496 (612)
+.++|.-+--.+.++.+|+ +.++|+|=--.. ..|.+.. -..|.++ --.+...-+|..++
T Consensus 87 IIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~l~ 156 (167)
T 3kip_A 87 VVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLGVYGYTAAIEYAL 156 (167)
T ss_dssp EEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHT
T ss_pred EEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCChhhHHHHHHHHH
Confidence 8889987777788999987 578999876443 3443333 3467777 56777788888776
No 135
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.86 E-value=3.7e+02 Score=25.54 Aligned_cols=40 Identities=5% Similarity=-0.038 Sum_probs=24.5
Q ss_pred HHHHcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 454 EALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 454 EAMA~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
++.. |.|||..+..... ....+..++.+....+...+++.
T Consensus 90 ~l~~-~iPvV~i~~~~~~----~~~~V~~D~~~~g~~a~~~L~~~ 129 (303)
T 3kke_A 90 AVLE-GVPAVTINSRVPG----RVGSVILDDQKGGGIATEHLITL 129 (303)
T ss_dssp HHHT-TSCEEEESCCCTT----CCCEEEECHHHHHHHHHHHHHHT
T ss_pred HHhC-CCCEEEECCcCCC----CCCEEEECcHHHHHHHHHHHHHC
Confidence 3444 9999998765432 11222336777777777777754
No 136
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=29.80 E-value=1.5e+02 Score=30.23 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=48.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc-------cceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG-------YKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~-------aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
++++++.+-...+.+..++.++++++.. .....+.+++++. .|+++..+....-.-.+.+|+.+|++|++-
T Consensus 38 ~~~~lva~v~d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~E 115 (398)
T 3dty_A 38 NTFVLVAGAFDIDPIRGSAFGEQLGVDS--ERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVCE 115 (398)
T ss_dssp GSEEEEEEECCSSHHHHHHHHHHTTCCG--GGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCeEEEEEEeCCCHHHHHHHHHHhCCCc--ceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEe
Confidence 4566653113456677788888888531 0234577788886 788877766655556788999999999985
No 137
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=29.75 E-value=2.2e+02 Score=28.02 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=55.6
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEe
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~ 441 (612)
..+..+|--.- | ...++++. ++.++++++.+-+ .+.+..++.+++++.. .. ..+.++++. .+|+++.
T Consensus 9 ~~v~iiG~G~i--g-~~~~~~l~---~~~~~~~~vav~d-~~~~~~~~~a~~~g~~-~~---~~~~~~~l~~~~~D~V~i 77 (346)
T 3cea_A 9 LRAAIIGLGRL--G-ERHARHLV---NKIQGVKLVAACA-LDSNQLEWAKNELGVE-TT---YTNYKDMIDTENIDAIFI 77 (346)
T ss_dssp EEEEEECCSTT--H-HHHHHHHH---HTCSSEEEEEEEC-SCHHHHHHHHHTTCCS-EE---ESCHHHHHTTSCCSEEEE
T ss_pred ceEEEEcCCHH--H-HHHHHHHH---hcCCCcEEEEEec-CCHHHHHHHHHHhCCC-cc---cCCHHHHhcCCCCCEEEE
Confidence 45667764211 2 13344443 1235677665543 4456666777777753 22 245677887 5798887
Q ss_pred ccCCCcchHHHHHHHHcCCcEEee
Q 007215 442 PSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas 465 (612)
.+......-.+.+|+..|++|++-
T Consensus 78 ~tp~~~h~~~~~~al~~G~~v~~e 101 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNAGLNVFCE 101 (346)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred eCChHhHHHHHHHHHHCCCEEEEc
Confidence 766555555678899999999985
No 138
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.54 E-value=42 Score=33.33 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=57.6
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHH--HHHhccceEEeccCCCc
Q 007215 374 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHAD--DSLHGYKVFINPSISDV 447 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~--~ll~~aDv~V~PS~~E~ 447 (612)
-.|=...|.+|+.-+..-..+-+++++|..... ..+.+.+.+.|-. -+|+|+.-... .-+..-|+++.....+.
T Consensus 51 L~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e 130 (295)
T 2zkq_b 51 LKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD 130 (295)
T ss_dssp HHHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcc
Confidence 345556666666555422224568888876544 4455666666644 24666544333 12233466665543322
Q ss_pred chHHHHHHHHcCCcEEee-CCCCccccc
Q 007215 448 LCTATAEALAMGKFVICA-DHPSNEFFR 474 (612)
Q Consensus 448 fgl~llEAMA~G~PVVas-~~gg~~~i~ 474 (612)
-.++.||...|.|||+- |.......+
T Consensus 131 -~~AI~EA~~lgIPvIalvDTn~dp~~V 157 (295)
T 2zkq_b 131 -HQPLTEASYVNLPTIALCNTDSPLRYV 157 (295)
T ss_dssp -HHHHHHHHHHTCCEEEEECTTCCCTTC
T ss_pred -hhHHHHHHHhCCCEEEEecCCCCcccC
Confidence 46899999999999998 544444333
No 139
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=29.37 E-value=1.8e+02 Score=23.37 Aligned_cols=105 Identities=11% Similarity=-0.043 Sum_probs=57.7
Q ss_pred CCeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHHc---CCcEEee
Q 007215 393 DGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALAM---GKFVICA 465 (612)
Q Consensus 393 ~~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA~---G~PVVas 465 (612)
.+.+++|+.+.+.. ..+.+...+.|..+.......+.-+.+.. .|+++.-.. .+.-|+.+++.+.. .+|||..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 45678888764443 55666667777655443322222244433 476665432 24456666666543 5677665
Q ss_pred -CCCCcc----ccccCCcEEec--C-CHHHHHHHHHHHHh
Q 007215 466 -DHPSNE----FFRSFPNCLTY--K-TSEDFVARVKEALA 497 (612)
Q Consensus 466 -~~gg~~----~i~~~~~g~l~--~-d~~~la~aI~~ll~ 497 (612)
.....+ .+..+..+++. - +.+++.++|..++.
T Consensus 86 t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 86 SATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp ECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred EcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 333322 33346677777 3 88999999999984
No 140
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.29 E-value=1.2e+02 Score=23.69 Aligned_cols=101 Identities=10% Similarity=0.071 Sum_probs=55.7
Q ss_pred EEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEecc-CCCcchHHHHHHHH-----cCCcEEee-
Q 007215 396 KLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPS-ISDVLCTATAEALA-----MGKFVICA- 465 (612)
Q Consensus 396 ~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS-~~E~fgl~llEAMA-----~G~PVVas- 465 (612)
+++++.+.+.. ..+.+...+.|..+.......+..+.+.. .|+.+.-. ..+.-|..+++.+. ..+|+|..
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 46666654432 45556666666555443322222233332 47666543 23445677777775 46777765
Q ss_pred CCCCcc-ccccCCcEEec--CCHHHHHHHHHHHH
Q 007215 466 DHPSNE-FFRSFPNCLTY--KTSEDFVARVKEAL 496 (612)
Q Consensus 466 ~~gg~~-~i~~~~~g~l~--~d~~~la~aI~~ll 496 (612)
.....+ ....+..+++. -+.+++.++|..++
T Consensus 83 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 83 GEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp SSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 333222 22234556666 57889998888766
No 141
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=29.17 E-value=1.3e+02 Score=29.98 Aligned_cols=91 Identities=19% Similarity=0.114 Sum_probs=58.1
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEe
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFIN 441 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~ 441 (612)
..+..+|--.- | ...++++.+.. ++++++-+-+ .+.+..++.+++++. .. ..+.+++++ ..|+++.
T Consensus 14 ~rvgiiG~G~~--g-~~~~~~l~~~~---~~~~lvav~d-~~~~~~~~~~~~~~~--~~---~~~~~~ll~~~~~D~V~i 81 (354)
T 3q2i_A 14 IRFALVGCGRI--A-NNHFGALEKHA---DRAELIDVCD-IDPAALKAAVERTGA--RG---HASLTDMLAQTDADIVIL 81 (354)
T ss_dssp EEEEEECCSTT--H-HHHHHHHHHTT---TTEEEEEEEC-SSHHHHHHHHHHHCC--EE---ESCHHHHHHHCCCSEEEE
T ss_pred ceEEEEcCcHH--H-HHHHHHHHhCC---CCeEEEEEEc-CCHHHHHHHHHHcCC--ce---eCCHHHHhcCCCCCEEEE
Confidence 45677765211 1 13445555432 4677664443 455667777777774 32 356778887 6788887
Q ss_pred ccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 442 PSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 442 PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.+....-.-.+.+|+..|++|++-.
T Consensus 82 ~tp~~~h~~~~~~al~~gk~v~~EK 106 (354)
T 3q2i_A 82 TTPSGLHPTQSIECSEAGFHVMTEK 106 (354)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCcHHHHHHHHHHHHCCCCEEEeC
Confidence 7665555556789999999999864
No 142
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=28.67 E-value=2e+02 Score=23.64 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=58.4
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcC-CceEEecCCCCHH-HHH---hccceEEeccC-CCcchHHHHHHHHc---CCcEE
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLD-LNLNFQKGRDHAD-DSL---HGYKVFINPSI-SDVLCTATAEALAM---GKFVI 463 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~-l~v~f~g~~~~~~-~ll---~~aDv~V~PS~-~E~fgl~llEAMA~---G~PVV 463 (612)
..+++|+.+.+.. ..+.....+.+ ..+.......+.- .+. ...|++++-.. .+.-|+.+++.+.. .+|||
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 99 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCL 99 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEE
Confidence 4567777654432 44555556655 4444322222111 222 34576665433 24446666666543 67777
Q ss_pred ee-CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhCC
Q 007215 464 CA-DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALAND 499 (612)
Q Consensus 464 as-~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~~ 499 (612)
.. .....+ .+..+..+++. -+.++|.++|..++...
T Consensus 100 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 100 LVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 65 333322 23345567776 79999999999998543
No 143
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=28.67 E-value=71 Score=31.95 Aligned_cols=104 Identities=9% Similarity=0.123 Sum_probs=64.6
Q ss_pred cEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC--H
Q 007215 333 VICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--A 406 (612)
Q Consensus 333 ~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~--~ 406 (612)
.+.||||-|-+..+|.. --..++.+|.- ....|.|+|-+....=...++.++.++ +++++.+++.... .
T Consensus 121 ~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~~~~rva~Sl~~~~~~~----~g~~v~~~~P~~~~~~ 195 (310)
T 3csu_A 121 NVPVLNAGDGSNQHPTQTLLDLFTIQETQGRL-DNLHVAMVGDLKYGRTVHSLTQALAKF----DGNRFYFIAPDALAMP 195 (310)
T ss_dssp TCCEEEEEETTSCCHHHHHHHHHHHHHHHSCS-SSCEEEEESCTTTCHHHHHHHHHHHTS----SSCEEEEECCGGGCCC
T ss_pred CCCEEcCccCCCCCchHHHHHHHHHHHHhCCc-CCcEEEEECCCCCCchHHHHHHHHHhC----CCCEEEEECCcccccC
Confidence 57788977755556642 22234444421 236789999754334456777777665 4688999995322 2
Q ss_pred HHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
+.+.+.+++.|..+.+. .+.++.++.+||+.....
T Consensus 196 ~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvyt~~~ 230 (310)
T 3csu_A 196 QYILDMLDEKGIAWSLH---SSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp HHHHHHHHHTTCCEEEC---SCGGGTTTTCSEEEECC-
T ss_pred HHHHHHHHHcCCeEEEE---cCHHHHhcCCCEEEECCc
Confidence 44556667777555443 566678999998877654
No 144
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=28.34 E-value=56 Score=31.64 Aligned_cols=101 Identities=16% Similarity=-0.010 Sum_probs=59.1
Q ss_pred CCccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHH--HHHhccceEEeccCCC
Q 007215 373 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHAD--DSLHGYKVFINPSISD 446 (612)
Q Consensus 373 ~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~--~ll~~aDv~V~PS~~E 446 (612)
+-.|=...|..|+.-+..-..+-.++++|..... ..+.+.+...|-. -+|+|+.-... .-+..-|++|.....
T Consensus 49 dL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~- 127 (252)
T 3u5c_A 49 NVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPR- 127 (252)
T ss_dssp CHHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTT-
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCc-
Confidence 3445566677777665542223467889976544 4455666666643 34666544333 223344666665432
Q ss_pred cchHHHHHHHHcCCcEEee-CCCCccccc
Q 007215 447 VLCTATAEALAMGKFVICA-DHPSNEFFR 474 (612)
Q Consensus 447 ~fgl~llEAMA~G~PVVas-~~gg~~~i~ 474 (612)
.=-.++.||...|.|||+- |.......+
T Consensus 128 ~d~~ai~EA~~l~IP~Ial~DTn~~p~~V 156 (252)
T 3u5c_A 128 SDAQAIKEASYVNIPVIALTDLDSPSEFV 156 (252)
T ss_dssp TTHHHHHHHHTTTCCEEEEECTTCCCTTC
T ss_pred cchHHHHHHHHcCCCEEEEEcCCCCcccC
Confidence 1245789999999999986 444433333
No 145
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=28.19 E-value=2e+02 Score=24.02 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=58.5
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc-----cceEEecc-CCCcchHHHHHHHH---cCCcEE
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG-----YKVFINPS-ISDVLCTATAEALA---MGKFVI 463 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~-----aDv~V~PS-~~E~fgl~llEAMA---~G~PVV 463 (612)
..+++|+.+.+.. ..+.....+.|..+... .+.++.+.. .|+++.-. ..+.-|+.+++.+. ..+|||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~---~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSF---ASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE---SCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEE---CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 3567777754433 55666666666555433 333333322 36666543 23445666666653 478887
Q ss_pred eeC-CCCc----cccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 464 CAD-HPSN----EFFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 464 as~-~gg~----~~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
..- .... ..+..+..+++. -+.+++.++|..++.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 653 3322 223345667776 789999999999884
No 146
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=27.92 E-value=88 Score=27.45 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHHH-cCCcEEeeCCC---Ccccccc
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEALA-MGKFVICADHP---SNEFFRS 475 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAMA-~G~PVVas~~g---g~~~i~~ 475 (612)
+.+++.++++|..+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|++ .++|+|=-... ..|.+..
T Consensus 32 ~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 111 (143)
T 1gqo_A 32 TDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAREEFRH 111 (143)
T ss_dssp HHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 445556677777777766555544 445444 3 88899877778899999974 68899866433 2343322
Q ss_pred ------CCcEEec-CCHHHHHHHHHHHH
Q 007215 476 ------FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 476 ------~~~g~l~-~d~~~la~aI~~ll 496 (612)
-..|.++ --.+...-|+..++
T Consensus 112 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 139 (143)
T 1gqo_A 112 QSVIAPVAKGQIVGLGAEGYKLAVRYLL 139 (143)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHH
Confidence 3467777 55666777776665
No 147
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=27.40 E-value=1.2e+02 Score=30.60 Aligned_cols=102 Identities=11% Similarity=0.154 Sum_probs=62.4
Q ss_pred cEEEeCCCCCCCCCCCc----cchhhhh-hccCCCCcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCC---
Q 007215 333 VICNVHGVNPKFLQIGE----KVATDRE-QGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGE--- 404 (612)
Q Consensus 333 ~i~vinGVd~~~f~~~~----~~~~~~~-~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~--- 404 (612)
.+.||||-+ +..+|.. --..++. +|..-....+.|+|-. ...=...++.++.++ ++++.+++...
T Consensus 121 ~vPVINa~~-~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~-~~~va~Sl~~~~~~~-----G~~v~~~~P~~~~p 193 (333)
T 1duv_G 121 SVPVWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDA-RNNMGNSMLEAAALT-----GLDLRLVAPQACWP 193 (333)
T ss_dssp SSCEEESCC-SSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCT-TSHHHHHHHHHHHHH-----CCEEEEECCGGGCC
T ss_pred CCCeEcCCC-CCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCC-ccchHHHHHHHHHHc-----CCEEEEECCcccCC
Confidence 366889876 5556642 2223344 4311123578999986 233345677777776 57899998532
Q ss_pred CH---HHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 405 DA---YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 405 ~~---~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
+. +..++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 194 ~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 194 EAALVTECRALAQQNGGNITLT---EDVAKGVEGADFIYTDVW 233 (333)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE---SCHHHHHTTCSEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCeEEEE---ECHHHHhCCCCEEEeCCc
Confidence 22 22344555777666554 567789999998877644
No 148
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=27.14 E-value=1.1e+02 Score=27.12 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=39.0
Q ss_pred HHHhccceEEeccCCCcchHH---HHHHHHcCCcEEee-C--CCC-cc-ccccCCc---EE--ecCCHHHHHHHHHHHHh
Q 007215 431 DSLHGYKVFINPSISDVLCTA---TAEALAMGKFVICA-D--HPS-NE-FFRSFPN---CL--TYKTSEDFVARVKEALA 497 (612)
Q Consensus 431 ~ll~~aDv~V~PS~~E~fgl~---llEAMA~G~PVVas-~--~gg-~~-~i~~~~~---g~--l~~d~~~la~aI~~ll~ 497 (612)
+.+..||++|.--. +.-.-+ +-=|.|.|+||++- + .+. .. .+.+..+ -. .+.+ +++.+.|.+.++
T Consensus 64 ~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~ 141 (152)
T 4fyk_A 64 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFE 141 (152)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC
T ss_pred HHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 78999998876432 333333 44578999999993 3 221 22 2222222 22 2256 888888888874
No 149
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=27.13 E-value=1.2e+02 Score=26.71 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc-----c-eEEeccCCCcchHHHHHHHH-cCCcEEeeCCC---Cccccc
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY-----K-VFINPSISDVLCTATAEALA-MGKFVICADHP---SNEFFR 474 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a-----D-v~V~PS~~E~fgl~llEAMA-~G~PVVas~~g---g~~~i~ 474 (612)
+.+++.++++|+.+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|++ .++|+|=-... ..|.+.
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FR 110 (149)
T 2uyg_A 31 ALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHAREEFR 110 (149)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccccccc
Confidence 456666778888887776655555 555554 2 78999887778999999974 68899866443 234332
Q ss_pred ------cCCcEEec-CCHHHHHHHHHHHH
Q 007215 475 ------SFPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 475 ------~~~~g~l~-~d~~~la~aI~~ll 496 (612)
+-..|.++ --.+...-||..++
T Consensus 111 h~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 139 (149)
T 2uyg_A 111 RHSVTAPACRGIVSGFGPLSYKLALVYLA 139 (149)
T ss_dssp GCCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccccceeEEEEecCHHHHHHHHHHHH
Confidence 23467777 55666666776665
No 150
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.01 E-value=2.4e+02 Score=22.57 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=55.3
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEecc-CCCcchHHHHHHHHc-----CCcEEee
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPS-ISDVLCTATAEALAM-----GKFVICA 465 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS-~~E~fgl~llEAMA~-----G~PVVas 465 (612)
.+++|+.+.+.. ..+..... .+..+.......+.-+.+.. .|+++.-. ..+.-|+.+++.+.. .+|||..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 456777643332 33333333 33334433322222233332 36666543 334557777777654 6787765
Q ss_pred C-CCCc---cccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 466 D-HPSN---EFFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 466 ~-~gg~---~~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
. .... ..+..+..+++. -+++++.++|.+++..
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 84 SGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp ESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 3 3222 223335566776 7999999999999843
No 151
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=26.93 E-value=2.8e+02 Score=23.15 Aligned_cols=107 Identities=9% Similarity=0.000 Sum_probs=58.1
Q ss_pred CcEEE-EEeccCCccCHHHHHHHHHHhhccC---CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCC-HHHHHhccc
Q 007215 363 SKGAY-FLGKMVWAKGYRELIDLLAKHKNDL---DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDH-ADDSLHGYK 437 (612)
Q Consensus 363 ~~~il-~vGrl~~~Kg~~~Li~A~~~l~~~~---~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~-~~~ll~~aD 437 (612)
+++++ |.+..++.=|-...+..+.++.+++ .++.++.+...++.+.+++.++++++...++..... ..++...+.
T Consensus 34 k~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 113 (150)
T 3fw2_A 34 KSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYS 113 (150)
T ss_dssp SEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcC
Confidence 45665 4444443300333344444443332 467888777777778889999999887444332222 225666555
Q ss_pred eEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec---CCHHHHHHHHHHHHh
Q 007215 438 VFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY---KTSEDFVARVKEALA 497 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~---~d~~~la~aI~~ll~ 497 (612)
+. +.|.+ .+++. +|-+. .+.+++.+.|.++++
T Consensus 114 v~-------------------~~P~~--------~lid~-~G~i~~~~~~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 114 IY-------------------KIPAN--------ILLSS-DGKILAKNLRGEELKKKIENIVE 148 (150)
T ss_dssp CC-------------------SSSEE--------EEECT-TSBEEEESCCHHHHHHHHHHHHH
T ss_pred CC-------------------ccCeE--------EEECC-CCEEEEccCCHHHHHHHHHHHHh
Confidence 42 33432 22221 11111 488899999988873
No 152
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=26.63 E-value=2.1e+02 Score=28.04 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHHcCCcEEee
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVICA 465 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA~G~PVVas 465 (612)
++++++.+-+ .+.+..++.+++++.. ....+.+++++. +|+++..+......-.+.+|+..|++|++-
T Consensus 23 ~~~~~vav~d-~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~e 92 (332)
T 2glx_A 23 TGGEVVSMMS-TSAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCE 92 (332)
T ss_dssp TTCEEEEEEC-SCHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCCeEEEEEC-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEEEe
Confidence 3566654433 4455666777777742 123566788874 798888776555556678899999999974
No 153
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=26.49 E-value=4.8e+02 Score=27.73 Aligned_cols=113 Identities=7% Similarity=0.064 Sum_probs=71.3
Q ss_pred CccCHHHHHHHHHH-hhc---cC--CCeEEEEEecCCC----HHHHHHHHHHcCCceEEecCC-----------------
Q 007215 374 WAKGYRELIDLLAK-HKN---DL--DGFKLDVFGNGED----AYEVQSAAKRLDLNLNFQKGR----------------- 426 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~-l~~---~~--~~~~LvIvG~g~~----~~~l~~~~~~l~l~v~f~g~~----------------- 426 (612)
...|.+.+++++-+ +.. .. .+-.+-|+|.-.. ..+++++.++.|+++.++...
T Consensus 191 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNIlg~~~~~~gD~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~g 270 (519)
T 1qgu_B 191 HVTGWDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSG 270 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCSCCCHHHHHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCC
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCeEEEecCccccccCcccCcccccCC
Confidence 34788888877643 332 11 2345777776432 378899999999997765543
Q ss_pred -CCHHHHHhccceEEeccCCCcchHHHHHHHH--cCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 427 -DHADDSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 427 -~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA--~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
...+++-+..+.-++-......+..+.+.|. +|+|.+..+.+ |.+ ..+++-++|.+++..
T Consensus 271 g~~~~ei~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP~i~~~~PiG~~------------~T~~~L~~la~~~g~ 334 (519)
T 1qgu_B 271 GTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPATEVAIPLGLA------------ATDELLMTVSQLSGK 334 (519)
T ss_dssp CBCHHHHHHGGGEEEEEESSTTTCHHHHHHHHHTSCCCCCCCCCCBSHH------------HHHHHHHHHHHHHCC
T ss_pred CCCHHHHHhhhcCCEEEEECHHHHHHHHHHHHHHcCCCeEecCCCcchH------------HHHHHHHHHHHHHCC
Confidence 3455666666555544444445678888885 49999876543 322 346677777777743
No 154
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=26.46 E-value=1.3e+02 Score=30.15 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=66.2
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++.+ ..+.||||-+ +..+|.. --..++.+|.- ....|.|+|-.. .=...++.++.
T Consensus 101 ~~D~iviR~~~~~~~~~lA~~~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~~--~va~Sl~~~~~ 176 (321)
T 1oth_A 101 MADAVLARVYKQSDLDTLAKEASIPIINGLS-DLYHPIQILADYLTLQEHYSSL-KGLTLSWIGDGN--NILHSIMMSAA 176 (321)
T ss_dssp HCSEEEEECSCHHHHHHHHHHCSSCEEESCC-SSCCHHHHHHHHHHHHHHHSCC-TTCEEEEESCSS--HHHHHHHTTTG
T ss_pred hCCEEEEeCCChhHHHHHHHhCCCCEEcCCC-CCCCcHHHHHHHHHHHHHhCCc-CCcEEEEECCch--hhHHHHHHHHH
Confidence 47887775442 222322 4578889765 5556542 22233444421 235788999752 12233444444
Q ss_pred HhhccCCCeEEEEEecCCCH--HH----HHHHHHHcCCceEEecCCCCHHHHHhccceEEec
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 442 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~----l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~P 442 (612)
++ ++++.+++..... +. .++.+++.|..+.+. .+.++.+..+||+..-
T Consensus 177 ~~-----G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~---~d~~eav~~aDvvy~d 230 (321)
T 1oth_A 177 KF-----GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLT---NDPLEAAHGGNVLITD 230 (321)
T ss_dssp GG-----TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEEC
T ss_pred Hc-----CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---ECHHHHhccCCEEEEe
Confidence 43 6889999964331 22 334445667566554 5677889999988773
No 155
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=26.11 E-value=1.1e+02 Score=30.93 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=66.8
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhh--ccCCCCcEEEEEeccCCccCHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQ--GQQAFSKGAYFLGKMVWAKGYRELIDL 384 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~--~~~~~~~~il~vGrl~~~Kg~~~Li~A 384 (612)
++|.|+.-... ..++.+ ..+.||||-+ +...|.. --..++.+ |..-....|.|+|-+ ..=...++.+
T Consensus 118 ~~D~IviR~~~~~~~~~lA~~~~vPVINag~-~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~--~rva~Sl~~~ 194 (339)
T 4a8t_A 118 LVDILMARVERHHSIVDLANCATIPVINGMS-DYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDA--TQVCFSLGLI 194 (339)
T ss_dssp HCSEEEEECSSHHHHHHHHHHCSSCEEECCC-SSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESSC--CHHHHHHHHH
T ss_pred hCCEEEEecCcHHHHHHHHHhCCCCEEECCC-CCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCC--chhHHHHHHH
Confidence 47877766553 222322 4577899776 4555542 12233343 311124578899976 2235677788
Q ss_pred HHHhhccCCCeEEEEEecCCCH--HHH----HHHHHHcCCceEEecCCCCHHHHHhccceEEe
Q 007215 385 LAKHKNDLDGFKLDVFGNGEDA--YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFIN 441 (612)
Q Consensus 385 ~~~l~~~~~~~~LvIvG~g~~~--~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~ 441 (612)
+.++ ++++.+++..... +.+ ++.+++.|..+.+. .+.+ .++.+||+..
T Consensus 195 ~~~~-----G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~---~d~~-av~~aDvvyt 248 (339)
T 4a8t_A 195 TTKM-----GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVT---DDAS-SVEGADFLYT 248 (339)
T ss_dssp HHHT-----TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEE---CCGG-GGTTCSEEEE
T ss_pred HHHc-----CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEE---CChh-HHcCCCEEEe
Confidence 8776 5789999863321 233 33445666555553 3455 7889998875
No 156
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=25.90 E-value=85 Score=27.86 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCceEEecCCCCHH--HHHhcc----c-eEEeccCCCcchHHHHHHH-HcCCcEEeeCCC---Ccccccc
Q 007215 407 YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGY----K-VFINPSISDVLCTATAEAL-AMGKFVICADHP---SNEFFRS 475 (612)
Q Consensus 407 ~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~a----D-v~V~PS~~E~fgl~llEAM-A~G~PVVas~~g---g~~~i~~ 475 (612)
+.+++.++++|+.+.|+..-.+.+ +.++.+ | +.++|.-+--.+.++.+|+ +.++|+|=-... ..|.+..
T Consensus 33 ~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 112 (154)
T 1uqr_A 33 QHLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAREPFRH 112 (154)
T ss_dssp HHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGSCGGGS
T ss_pred HHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 445556667776676665555444 555554 3 7889977666788899986 568999976443 2343332
Q ss_pred ------CCcEEec-CCHHHHHHHHHHHH
Q 007215 476 ------FPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 476 ------~~~g~l~-~d~~~la~aI~~ll 496 (612)
-..|.++ --.+...-|+..++
T Consensus 113 ~S~~s~~a~GvI~G~G~~gY~lAl~a~~ 140 (154)
T 1uqr_A 113 HSYLSDVAKGVICGLGAKGYDYALDFAI 140 (154)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccCcceeEEEEecCHHHHHHHHHHHH
Confidence 3467777 44455555555443
No 157
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.89 E-value=69 Score=31.76 Aligned_cols=100 Identities=12% Similarity=-0.068 Sum_probs=57.8
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEecCCCH-HHHHHHHHHcCCc---eEEecCCCCHH--HHHhccceEEeccCCCc
Q 007215 374 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGRDHAD--DSLHGYKVFINPSISDV 447 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~-~~l~~~~~~l~l~---v~f~g~~~~~~--~ll~~aDv~V~PS~~E~ 447 (612)
-.|=.+.|..|+.-+..-...-+++++|..... ..+.+.++..|-. -+|+|+.-... .-++.=|++|.....+
T Consensus 55 L~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~- 133 (305)
T 3iz6_A 55 LGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT- 133 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCccc-
Confidence 345556666666555432123468889976544 4455556665643 35666654443 2233346666654322
Q ss_pred chHHHHHHHHcCCcEEee-CCCCccccc
Q 007215 448 LCTATAEALAMGKFVICA-DHPSNEFFR 474 (612)
Q Consensus 448 fgl~llEAMA~G~PVVas-~~gg~~~i~ 474 (612)
=-..+.||...|+|||+- |.......+
T Consensus 134 d~qAI~EA~~lnIPtIALvDTnsdp~~V 161 (305)
T 3iz6_A 134 DHQPIKESALGNIPTIAFCDTDSPMRYV 161 (305)
T ss_dssp THHHHHHHHHHTCCEEEEECTTSCGGGC
T ss_pred chHHHHHHHHcCCCEEEEEcCCCCcccc
Confidence 245789999999999986 444443333
No 158
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=25.74 E-value=1.2e+02 Score=30.11 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=52.6
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEec
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINP 442 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~P 442 (612)
.+..+|--.- | ..+++++.+. ++++++-+-+.. .+..++.+++++..- ...+.++++. ..|+++..
T Consensus 7 rigiiG~G~i--g-~~~~~~l~~~----~~~~~~av~d~~-~~~~~~~a~~~~~~~----~~~~~~~ll~~~~~D~V~i~ 74 (329)
T 3evn_A 7 RYGVVSTAKV--A-PRFIEGVRLA----GNGEVVAVSSRT-LESAQAFANKYHLPK----AYDKLEDMLADESIDVIYVA 74 (329)
T ss_dssp EEEEEBCCTT--H-HHHHHHHHHH----CSEEEEEEECSC-SSTTCC---CCCCSC----EESCHHHHHTCTTCCEEEEC
T ss_pred EEEEEechHH--H-HHHHHHHHhC----CCcEEEEEEcCC-HHHHHHHHHHcCCCc----ccCCHHHHhcCCCCCEEEEC
Confidence 4556664211 1 2355666544 567666554322 233344455555321 2356778888 67888877
Q ss_pred cCCCcchHHHHHHHHcCCcEEeeC
Q 007215 443 SISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 443 S~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+....-.-.+.+|+..|++|++-.
T Consensus 75 tp~~~h~~~~~~al~aGk~Vl~EK 98 (329)
T 3evn_A 75 TINQDHYKVAKAALLAGKHVLVEK 98 (329)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCcHHHHHHHHHHHHCCCeEEEcc
Confidence 666555556789999999999864
No 159
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.34 E-value=1.8e+02 Score=23.82 Aligned_cols=105 Identities=8% Similarity=-0.081 Sum_probs=62.5
Q ss_pred CeEEEEEecCCCH-HHHHHHHHH-cCCceEEecCCCCHHHHHhc---cceEEeccCC--CcchHHHHHHHHc-----CCc
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKR-LDLNLNFQKGRDHADDSLHG---YKVFINPSIS--DVLCTATAEALAM-----GKF 461 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~-l~l~v~f~g~~~~~~~ll~~---aDv~V~PS~~--E~fgl~llEAMA~-----G~P 461 (612)
..+++|+.+.+.. ..+.....+ .+..+.......+.-+.+.. .|+++.-... +.-|+.+++.+.. .+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ 83 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTP 83 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCC
Confidence 3567777754433 556666666 66655543332222244433 5777765433 2346677776654 778
Q ss_pred EEeeC-CCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 462 VICAD-HPSNE----FFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 462 VVas~-~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
||..- ....+ .+..+..+++. -+.++|.++|..++..
T Consensus 84 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 84 VIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp EEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 87753 33322 23346677777 7889999999999943
No 160
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.33 E-value=2.2e+02 Score=23.23 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=58.0
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHH---cCCcEEee-CC
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALA---MGKFVICA-DH 467 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA---~G~PVVas-~~ 467 (612)
.+++++.+.+.. ..+.....+.|..+.......+.-+.+.. .|+++.-...+.-|+.+++.+. ..+|||.. ..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEECC
Confidence 467777654432 45556666666555443332222234333 4666654422334555666553 36787765 33
Q ss_pred CCcc----ccccCCcEEec--CCHHHHHHHHHHHHhCC
Q 007215 468 PSNE----FFRSFPNCLTY--KTSEDFVARVKEALAND 499 (612)
Q Consensus 468 gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~~ 499 (612)
...+ .+..+..+++. -+.+++.++|..++...
T Consensus 85 ~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 85 VDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 3322 22335566666 78999999999998543
No 161
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=25.24 E-value=1.5e+02 Score=29.11 Aligned_cols=68 Identities=9% Similarity=0.002 Sum_probs=43.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
++++++.+-+. +.+..++.+++++.. ...+.+++-...|+++..+......-.+.+|+..|++|++-.
T Consensus 29 ~~~~lvav~d~-~~~~~~~~~~~~g~~-----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 29 SDWTLQGAWSP-TRAKALPICESWRIP-----YADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp SSEEEEEEECS-SCTTHHHHHHHHTCC-----BCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEES
T ss_pred CCeEEEEEECC-CHHHHHHHHHHcCCC-----ccCcHHHhhcCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeC
Confidence 57777633332 223344556666643 244555564567988887766555566788999999999853
No 162
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=25.20 E-value=1.3e+02 Score=29.82 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=49.3
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 392 LDGFKLDVFGNGED---AYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 392 ~~~~~LvIvG~g~~---~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.++++++-+-+... .+.+.+.++++++.... ..+.+++++. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 98 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKK---YNNWWEMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEK 98 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEE---CSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcc---cCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeC
Confidence 36788876665432 35666667777754333 4677788886 6888777655444456899999999999653
No 163
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=25.06 E-value=1.1e+02 Score=30.79 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=54.3
Q ss_pred EEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhcc--ceEEec
Q 007215 365 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINP 442 (612)
Q Consensus 365 ~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~a--Dv~V~P 442 (612)
.+..+|--.. |...+++++.+. ++++++-+-+ .+.+..++.+++++.. .. ..+.+++++.. |+++..
T Consensus 7 rigiIG~G~~--g~~~~~~~l~~~----~~~~l~av~d-~~~~~~~~~a~~~~~~-~~---~~~~~~ll~~~~vD~V~i~ 75 (359)
T 3m2t_A 7 KVGLVGIGAQ--MQENLLPSLLQM----QDIRIVAACD-SDLERARRVHRFISDI-PV---LDNVPAMLNQVPLDAVVMA 75 (359)
T ss_dssp EEEEECCSHH--HHHTHHHHHHTC----TTEEEEEEEC-SSHHHHGGGGGTSCSC-CE---ESSHHHHHHHSCCSEEEEC
T ss_pred eEEEECCCHH--HHHHHHHHHHhC----CCcEEEEEEc-CCHHHHHHHHHhcCCC-cc---cCCHHHHhcCCCCCEEEEc
Confidence 4556663211 122245555443 6777764443 3455556656655422 11 25677899876 877777
Q ss_pred cCCCcchHHHHHHHHcCCcEEeeC
Q 007215 443 SISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 443 S~~E~fgl~llEAMA~G~PVVas~ 466 (612)
+....-.-.+.+|+..|++|++-.
T Consensus 76 tp~~~H~~~~~~al~aGkhVl~EK 99 (359)
T 3m2t_A 76 GPPQLHFEMGLLAMSKGVNVFVEK 99 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEC
Confidence 655444556789999999999864
No 164
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=24.87 E-value=1e+02 Score=27.31 Aligned_cols=65 Identities=8% Similarity=0.046 Sum_probs=41.1
Q ss_pred ccCHH--HHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHH-cCCceEEecCCC-CHHHHHhccceEEec
Q 007215 375 AKGYR--ELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKR-LDLNLNFQKGRD-HADDSLHGYKVFINP 442 (612)
Q Consensus 375 ~Kg~~--~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~-l~l~v~f~g~~~-~~~~ll~~aDv~V~P 442 (612)
+|+.| ..++++... ...+.-+++-|+++-.. +.+.+++ +|..|..+|... ...++.+.||-|+.-
T Consensus 91 k~~~Dv~laiD~~~~a--~~~d~~vLvSgD~DF~p-lv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l 159 (165)
T 2qip_A 91 KGDWDVGITLDAIEIA--PDVDRVILVSGDGDFSL-LVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAI 159 (165)
T ss_dssp SCCCHHHHHHHHHHHG--GGCSEEEEECCCGGGHH-HHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEEC
T ss_pred CCCccHHHHHHHHHhh--ccCCEEEEEECChhHHH-HHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEec
Confidence 45555 566777654 23566566666664444 4445666 698887777643 345899999988753
No 165
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=24.76 E-value=5.3e+02 Score=27.11 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=52.7
Q ss_pred eEEEEEecCC---CHHHHHHHHHHcCCceE-EecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHH--HcCCcEEeeC
Q 007215 395 FKLDVFGNGE---DAYEVQSAAKRLDLNLN-FQKGRDHADDSLHG--YKVFINPSISDVLCTATAEAL--AMGKFVICAD 466 (612)
Q Consensus 395 ~~LvIvG~g~---~~~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAM--A~G~PVVas~ 466 (612)
-.+-|+|.-. +..+++++.+++|+++. .++.-...+++-+. |++-|... ..++..+.+.| -+|+|.+...
T Consensus 204 ~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~~gg~~~~el~~~~~A~~niv~~--~~~~~~~A~~Le~~~GiP~i~~~ 281 (483)
T 3pdi_A 204 HDVNLIGEYNIAGEFWHVLPLLDELGLRVLCTLAGDARYREVQTMHRAEVNMMVC--SKAMLNVARKLQETYGTPWFEGS 281 (483)
T ss_dssp EEEEEESCCCBTTGGGGTHHHHHHHTEEEEEEETSSBCHHHHTTGGGCSEEEEES--CCTTHHHHHHHHHHHCCCEEEEC
T ss_pred CeEEEEcCCCChhHHHHHHHHHHHCCCcEEEECCCcCCHHHHHhhhcCCEEEEEc--hhhHHHHHHHHHHHhCCCEeecC
Confidence 4688888532 34678999999998854 44443445555544 44444332 23456677776 5799988642
Q ss_pred CCCccccccCCcEEecCCHHHHHHHHHHHH
Q 007215 467 HPSNEFFRSFPNCLTYKTSEDFVARVKEAL 496 (612)
Q Consensus 467 ~gg~~~i~~~~~g~l~~d~~~la~aI~~ll 496 (612)
-=|. .+.+++-++|.+++
T Consensus 282 p~Gi------------~~T~~~L~~ia~~~ 299 (483)
T 3pdi_A 282 FYGI------------TDTSQALRDFARLL 299 (483)
T ss_dssp SSSH------------HHHHHHHHHHHHHT
T ss_pred CCCH------------HHHHHHHHHHHHHh
Confidence 1111 23456666666666
No 166
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.75 E-value=2.6e+02 Score=22.17 Aligned_cols=104 Identities=8% Similarity=0.012 Sum_probs=59.6
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEec-cCCCcchHHHHHHHHc-----CCcEEe
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINP-SISDVLCTATAEALAM-----GKFVIC 464 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~P-S~~E~fgl~llEAMA~-----G~PVVa 464 (612)
..+++|+.+.+.. ..+.+..++.|..+.......+.-+.+.. .|+++.- ...+.-|+.+++.+.. .+|||.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVA 82 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEE
Confidence 3567777754432 55666667766554443322222244433 3666553 3345567777777653 477776
Q ss_pred eC-CCCc---cccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 465 AD-HPSN---EFFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 465 s~-~gg~---~~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
.. .... ..+..+..+++. -+.++|.+++.....
T Consensus 83 ~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 83 VSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp EECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred EECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 53 3322 223335566766 799999999998874
No 167
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.74 E-value=2.8e+02 Score=22.54 Aligned_cols=104 Identities=11% Similarity=-0.002 Sum_probs=61.8
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCC--ceEEecCCCCHHHHHh------------ccceEEeccC-CCcchHHHHHHHH
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDL--NLNFQKGRDHADDSLH------------GYKVFINPSI-SDVLCTATAEALA 457 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l--~v~f~g~~~~~~~ll~------------~aDv~V~PS~-~E~fgl~llEAMA 457 (612)
..+++|+.+.+.. ..+.....+.+. .+.......+.-+.+. ..|+++.=.. .+.-|+.+++.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 4567777754433 556666677665 3444444333335554 3577665433 3445777888775
Q ss_pred -----cCCcEEee-CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHh
Q 007215 458 -----MGKFVICA-DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALA 497 (612)
Q Consensus 458 -----~G~PVVas-~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~ 497 (612)
..+|||.. .....+ .+..+..+++. -+.++|.++|..++.
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 45677765 333322 23345667777 689999999988873
No 168
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=24.70 E-value=1.3e+02 Score=31.39 Aligned_cols=93 Identities=12% Similarity=0.159 Sum_probs=57.5
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCc---eEEecCCCCHHHHHh--ccce
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN---LNFQKGRDHADDSLH--GYKV 438 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~---v~f~g~~~~~~~ll~--~aDv 438 (612)
..+..+|--.- |...+++++.+ .++++++.+-+ .+.+..++.+++++.. +. ...+.++++. ..|+
T Consensus 84 irigiIG~G~~--g~~~~~~~l~~----~~~~~lvav~d-~~~~~~~~~a~~~g~~~~~~~---~~~~~~~ll~~~~vD~ 153 (433)
T 1h6d_A 84 FGYAIVGLGKY--ALNQILPGFAG----CQHSRIEALVS-GNAEKAKIVAAEYGVDPRKIY---DYSNFDKIAKDPKIDA 153 (433)
T ss_dssp EEEEEECCSHH--HHHTHHHHTTT----CSSEEEEEEEC-SCHHHHHHHHHHTTCCGGGEE---CSSSGGGGGGCTTCCE
T ss_pred eEEEEECCcHH--HHHHHHHHHhh----CCCcEEEEEEc-CCHHHHHHHHHHhCCCccccc---ccCCHHHHhcCCCCCE
Confidence 35667764111 11123444422 35677765554 4455667777777753 22 2355667887 5788
Q ss_pred EEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 439 FINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 439 ~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
++..+......-.+.+|+..|++|++-.
T Consensus 154 V~iatp~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 154 VYIILPNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred EEEcCCchhHHHHHHHHHHCCCcEEEcC
Confidence 8887766656667889999999999864
No 169
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=24.54 E-value=2.6e+02 Score=22.00 Aligned_cols=103 Identities=8% Similarity=-0.033 Sum_probs=55.6
Q ss_pred EEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEecc-CCCcchHHHHHHHHc-----CCcEEeeC
Q 007215 396 KLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPS-ISDVLCTATAEALAM-----GKFVICAD 466 (612)
Q Consensus 396 ~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~PS-~~E~fgl~llEAMA~-----G~PVVas~ 466 (612)
+++|+.+.+.. ..+.......|..+.......+.-+.+. ..|+++.-. ..+.-|+.+++.+.. .+|||...
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 46666644332 4455555666654433221111113332 247666532 234457777777753 57887653
Q ss_pred C-CCcc----ccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 467 H-PSNE----FFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 467 ~-gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
. ...+ .+..+..+++. -+.+++.++|..++..
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 83 AFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp ------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 2 2222 22346677777 7899999999998844
No 170
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.34 E-value=3.1e+02 Score=22.78 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHH---cCCcEEee
Q 007215 393 DGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALA---MGKFVICA 465 (612)
Q Consensus 393 ~~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA---~G~PVVas 465 (612)
...+++|+.+.+.. ..+.....+.|..+.......+.-+.+.. .|+++.-.. .+.-|+.+++.+. ..+|||..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 35678888754433 45555666666555443332222244433 476665432 3445666666653 46787765
Q ss_pred CC-CCcc----ccccC-CcEEec--CCHHHHHHHHHHHH
Q 007215 466 DH-PSNE----FFRSF-PNCLTY--KTSEDFVARVKEAL 496 (612)
Q Consensus 466 ~~-gg~~----~i~~~-~~g~l~--~d~~~la~aI~~ll 496 (612)
-. ...+ .+..+ ..+++. -+.+++.++|..++
T Consensus 86 s~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 86 SGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp ECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 33 3222 22233 567776 68999999999887
No 171
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.23 E-value=2.7e+02 Score=22.14 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=57.9
Q ss_pred EEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccC-CCcchHHHHHHHH-----cCCcEEee-
Q 007215 396 KLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSI-SDVLCTATAEALA-----MGKFVICA- 465 (612)
Q Consensus 396 ~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~-~E~fgl~llEAMA-----~G~PVVas- 465 (612)
+++++.+.+.. ..+....++.|..+.......+.-+.+.. .|+++.-.. .+.-|+.+++.+. ..+|||..
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 46666654332 44555556666554433222222234433 366665432 3455778888774 35787764
Q ss_pred CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHH
Q 007215 466 DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEAL 496 (612)
Q Consensus 466 ~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll 496 (612)
..+..+ .+..|..+++. -+++++.++|.+++
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 333322 23346677777 79999999999887
No 172
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=23.94 E-value=3.7e+02 Score=25.11 Aligned_cols=57 Identities=11% Similarity=-0.070 Sum_probs=33.4
Q ss_pred cceEEeccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 436 YKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 436 aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
.|.+|+.+.... ...++++...|.|||..+.... ....+..++.+....+...+++.
T Consensus 69 vdgiIi~~~~~~-~~~~~~~~~~~iPvV~~~~~~~-----~~~~V~~D~~~~~~~a~~~L~~~ 125 (289)
T 3g85_A 69 FDAAIIANISNY-DLEYLNKASLTLPIILFNRLSN-----KYSSVNVDNYKMGEKASLLFAKK 125 (289)
T ss_dssp CSEEEESSCCHH-HHHHHHHCCCSSCEEEESCCCS-----SSEEEEECHHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCcc-cHHHHHhccCCCCEEEECCCCC-----CCCEEEeCHHHHHHHHHHHHHHc
Confidence 465555433211 2456667778999999876421 12222336777777777777754
No 173
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=23.61 E-value=2.6e+02 Score=23.21 Aligned_cols=106 Identities=8% Similarity=-0.064 Sum_probs=57.4
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHc-CCc-eEEecCCCCHHHHHhc---cceEEeccCC-CcchHHHHHHHH---cCCcEE
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRL-DLN-LNFQKGRDHADDSLHG---YKVFINPSIS-DVLCTATAEALA---MGKFVI 463 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l-~l~-v~f~g~~~~~~~ll~~---aDv~V~PS~~-E~fgl~llEAMA---~G~PVV 463 (612)
..+++|+.+.+.. ..+.....+. +.. +.......+.-+.+.. .|+++.-... +.-|+.+++.+. ..+|||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 3567777754433 4555556655 542 4333333333355544 5777654322 334566666654 467887
Q ss_pred eeC-CCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhCC
Q 007215 464 CAD-HPSNE----FFRSFPNCLTY--KTSEDFVARVKEALAND 499 (612)
Q Consensus 464 as~-~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~~ 499 (612)
..- ....+ .+..+..+++. -+.+++.++|..++...
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 653 32222 23335566666 68999999999999543
No 174
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.58 E-value=3.6e+02 Score=25.84 Aligned_cols=61 Identities=16% Similarity=0.024 Sum_probs=32.0
Q ss_pred ccceEEe-ccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHh
Q 007215 435 GYKVFIN-PSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALA 497 (612)
Q Consensus 435 ~aDv~V~-PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~ 497 (612)
..|.+|+ |...+...-.+-++...|+|||..+...... .....++. ++.+.-..+...+++
T Consensus 59 ~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~l~~ 121 (330)
T 3uug_A 59 GVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--GDVSYYATFDNFQVGVLQATSITD 121 (330)
T ss_dssp TCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--TTCCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--CceeEEEEeCHHHHHHHHHHHHHH
Confidence 3464444 4333344445667788999999987653220 11122333 555544444445543
No 175
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=23.58 E-value=1.2e+02 Score=30.80 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=66.8
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhh--ccCCCCcEEEEEeccCCccCHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQ--GQQAFSKGAYFLGKMVWAKGYRELIDL 384 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~--~~~~~~~~il~vGrl~~~Kg~~~Li~A 384 (612)
++|.|+.-... ..++.+ ..+.||||-+ +...|.. --..++.+ |..-....|.|+|-+ ..=...++.+
T Consensus 96 y~D~IviR~~~~~~~~~lA~~~~vPVINag~-~~~HPtQaLaDl~TI~E~~~~G~~l~glkva~vGD~--~rva~Sl~~~ 172 (355)
T 4a8p_A 96 LVDILMARVERHHSIVDLANCATIPVINGMS-DYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDA--TQVCFSLGLI 172 (355)
T ss_dssp TCSEEEEECSSHHHHHHHHHHCSSCEEECCC-SSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESCC--CHHHHHHHHH
T ss_pred hCCEEEEecCcHHHHHHHHHhCCCCEEeCCC-CCCCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCC--chhHHHHHHH
Confidence 57877766552 222322 4577889776 4555542 12233333 311124578899976 2235677788
Q ss_pred HHHhhccCCCeEEEEEecCCCH--HHH----HHHHHHcCCceEEecCCCCHHHHHhccceEEe
Q 007215 385 LAKHKNDLDGFKLDVFGNGEDA--YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFIN 441 (612)
Q Consensus 385 ~~~l~~~~~~~~LvIvG~g~~~--~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~ 441 (612)
+.++ ++++.+++..... +.+ ++.+++.|..+.+. .+.+ .+..+||+..
T Consensus 173 ~~~~-----G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~-av~~aDVVyt 226 (355)
T 4a8p_A 173 TTKM-----GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVT---DDAS-SVEGADFLYT 226 (355)
T ss_dssp HHHT-----TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEE---CCGG-GGTTCSEEEE
T ss_pred HHHc-----CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEE---CCHH-HHcCCCEEEe
Confidence 8776 6789999863321 233 33445666556553 3455 7889998875
No 176
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=23.52 E-value=3.1e+02 Score=22.63 Aligned_cols=104 Identities=10% Similarity=-0.019 Sum_probs=55.0
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCc--eEEecCCCCHHHHHhc--cceEEecc-CCCcchHHHHHHHHc---CCcEEee
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLN--LNFQKGRDHADDSLHG--YKVFINPS-ISDVLCTATAEALAM---GKFVICA 465 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~--v~f~g~~~~~~~ll~~--aDv~V~PS-~~E~fgl~llEAMA~---G~PVVas 465 (612)
.+++|+.+.+.. ..+.....+.+.. +.......+.-+.+.. .|+++.-. ..+.-|+.+++.+.. .+|||..
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~l 100 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVV 100 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 566666643332 3444444444321 2222222111133332 36665543 234556777766643 5677655
Q ss_pred -CCCCc----cccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 466 -DHPSN----EFFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 466 -~~gg~----~~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
..... +.+..+..+++. -+.+++.++|.+++..
T Consensus 101 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 101 TTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 33332 233346677777 6999999999999944
No 177
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=23.39 E-value=1.5e+02 Score=29.46 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=68.6
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCcc----chhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGEK----VATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~~----~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++.+ ..+.||||-|. ..+|... -..++.+|.-.....|.|+|-. ..=...++.++.
T Consensus 91 ~~D~iviR~~~~~~~~~lA~~~~vPVINag~~-~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD~--~~va~Sl~~~~~ 167 (307)
T 3tpf_A 91 MVDFVMMRVNKHETLLEFARYSKAPVINALSE-LYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDS--NNMCNSWLITAA 167 (307)
T ss_dssp HSSEEEEECSCHHHHHHHHHHCSSCEEEEECS-SCCHHHHHHHHHHHHHTTCCGGGCCEEEEESCS--SHHHHHHHHHHH
T ss_pred hCCEEEEecCChHHHHHHHHhCCCCEEeCCCC-CcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--CccHHHHHHHHH
Confidence 47877775442 223322 45778897773 5555421 2233444321213578899963 222456777777
Q ss_pred HhhccCCCeEEEEEecCCCH--HHH----HHHHHHcCCceEEecCCCCHHHHHhccceEEecc
Q 007215 387 KHKNDLDGFKLDVFGNGEDA--YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 443 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~~~--~~l----~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS 443 (612)
++ ++++.+++..... +.+ ++.+++.|..+.+. .+.++.++.+||+....
T Consensus 168 ~~-----G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~---~d~~eav~~aDvvyt~~ 222 (307)
T 3tpf_A 168 IL-----GFEISIAMPKNYKISPEIWEFAMKQALISGAKISLG---YDKFEALKDKDVVITDT 222 (307)
T ss_dssp HH-----TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHHTTCSEEEECC
T ss_pred Hc-----CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEE---cCHHHHhcCCCEEEecC
Confidence 76 5789999863321 233 33445666555543 45678899999887764
No 178
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=23.38 E-value=91 Score=30.78 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCHHHHHhccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 427 DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 427 ~~~~~ll~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
.+.++++..+|+.|--|..+..--.+..++..|+|+|....|-
T Consensus 80 ~dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp SCHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4667888899999976654444444667899999999876663
No 179
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=23.34 E-value=2.4e+02 Score=28.45 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 404 EDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 404 ~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
.+.+..++.+++++..-. ..+.+++++. .|+++..+....-.-.+.+||.+|++|++-.
T Consensus 54 ~~~~~a~~~a~~~~~~~~----~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 54 RSAEKVEALAKRFNIARW----TTDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp SSSHHHHHHHHHTTCCCE----ESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECS
T ss_pred CCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcC
Confidence 344666777888885411 3677789987 5777777666666667899999999999753
No 180
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.95 E-value=4.7e+02 Score=24.49 Aligned_cols=45 Identities=11% Similarity=-0.104 Sum_probs=27.3
Q ss_pred HHHHHHHcCCcEEeeCCCCccccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 451 ATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 451 ~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
..++.+..|.|||..+...... ....+..++.+....+...+++.
T Consensus 80 ~~~~~~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~~~~a~~~L~~~ 124 (289)
T 3k9c_A 80 DELGALADRVPALVVARASGLP---GVGAVRGDDVAGITLAVDHLTEL 124 (289)
T ss_dssp HHHHHHHTTSCEEEESSCCSST---TSEEEEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEcCCCCCC---CCCEEEeChHHHHHHHHHHHHHC
Confidence 4566666699999987643211 11222236777777777777754
No 181
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=22.85 E-value=1.1e+02 Score=30.76 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=48.0
Q ss_pred HHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceE--Eec-----------CCCCHHHHHhccceEEeccCCC
Q 007215 380 ELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLN--FQK-----------GRDHADDSLHGYKVFINPSISD 446 (612)
Q Consensus 380 ~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~--f~g-----------~~~~~~~ll~~aDv~V~PS~~E 446 (612)
.+++++.. .|+++++.+.+.. .+....+++..|..+. |.+ ...+.++++...|+.+..+-..
T Consensus 16 ~~~r~l~~----~~~~elvav~d~~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~ 90 (334)
T 2czc_A 16 RVAYAVTK----QDDMELIGITKTK-PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGG 90 (334)
T ss_dssp HHHHHHHT----CTTEEEEEEEESS-CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTT
T ss_pred HHHHHHhc----CCCCEEEEEEcCC-HHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCcc
Confidence 35555543 3678887776543 3444555666654321 111 1135557778889888776543
Q ss_pred cchHHHHHHHHcCCcEEeeC
Q 007215 447 VLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 447 ~fgl~llEAMA~G~PVVas~ 466 (612)
.---....++..|++||++.
T Consensus 91 ~h~~~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 91 IGAKNKPLYEKAGVKAIFQG 110 (334)
T ss_dssp HHHHHHHHHHHHTCEEEECT
T ss_pred ccHHHHHHHHHcCCceEeec
Confidence 32223457888999999763
No 182
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=22.70 E-value=2e+02 Score=29.51 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=54.2
Q ss_pred HHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEec----------CCCCHHHHHhccceEEe--ccCCC-----
Q 007215 384 LLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQK----------GRDHADDSLHGYKVFIN--PSISD----- 446 (612)
Q Consensus 384 A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g----------~~~~~~~ll~~aDv~V~--PS~~E----- 446 (612)
..++......+-++-|+|-|.--..+-+.+..+|.+|..+. ...+.+++++.||++++ |...+
T Consensus 106 l~r~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T 185 (380)
T 2o4c_A 106 MAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPT 185 (380)
T ss_dssp HHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCC
T ss_pred HHhhhhcccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccch
Confidence 33333333456788888888777777777777776655432 13455688999997776 33323
Q ss_pred --cchHHHHHHHHcCCcEEeeCCCC
Q 007215 447 --VLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 447 --~fgl~llEAMA~G~PVVas~~gg 469 (612)
-++-..+++|-.|.-+|-+..|+
T Consensus 186 ~~li~~~~l~~mk~gailIN~sRG~ 210 (380)
T 2o4c_A 186 RHLLDEPRLAALRPGTWLVNASRGA 210 (380)
T ss_dssp TTSBCHHHHHTSCTTEEEEECSCGG
T ss_pred hhhcCHHHHhhCCCCcEEEECCCCc
Confidence 23445777787777666555554
No 183
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.65 E-value=4.7e+02 Score=24.36 Aligned_cols=59 Identities=10% Similarity=-0.160 Sum_probs=31.0
Q ss_pred cceEE-eccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHh
Q 007215 436 YKVFI-NPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALA 497 (612)
Q Consensus 436 aDv~V-~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~ 497 (612)
+|.+| .|...+...-.+-++...|+|||..+...... .....+. ++.+....+...+++
T Consensus 65 vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~---~~~~~V~~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 65 VDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD---AVVSSITSNNQMIGEQLASYIKN 125 (293)
T ss_dssp CSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCCT---TCSEEEEECHHHHHHHHHHHHHH
T ss_pred CCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCCC---cceeEEecCHHHHHHHHHHHHHH
Confidence 45444 44444444344555667899999987553220 1122333 555555555555553
No 184
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=22.57 E-value=3e+02 Score=22.11 Aligned_cols=105 Identities=10% Similarity=-0.043 Sum_probs=63.6
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCCceEEecCCCCHHHHHhc---cceEEeccC-CCcchHHHHHHHHc----CCcEEe
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG---YKVFINPSI-SDVLCTATAEALAM----GKFVIC 464 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l~v~f~g~~~~~~~ll~~---aDv~V~PS~-~E~fgl~llEAMA~----G~PVVa 464 (612)
..+++|+.+.+.. ..+.+...+.|..+.......+....+.. .|+++.-.. .+.-|+.+++.+.. .+|||.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 4678888864443 55666677777666544333222233332 576665433 35567788887754 467776
Q ss_pred eC-CCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 465 AD-HPSNE----FFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 465 s~-~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
.. ....+ .+..+..+++. -+.++|.++|.+++..
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 53 33322 23336677777 7999999999999843
No 185
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.50 E-value=4.5e+02 Score=24.93 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=30.8
Q ss_pred cceEE-eccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHH
Q 007215 436 YKVFI-NPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEAL 496 (612)
Q Consensus 436 aDv~V-~PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll 496 (612)
+|.+| .|...+...-.+-++...|+|||..+..... ......+. ++.+.-..+...++
T Consensus 59 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 59 VDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---ADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp CSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SCCSEEEEECHHHHHHHHHHHHH
T ss_pred CCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CCceEEEecCHHHHHHHHHHHHH
Confidence 45444 4443344444455667789999998765322 11112333 55555555555555
No 186
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=22.40 E-value=1.6e+02 Score=30.15 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=53.0
Q ss_pred CcEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhccceEEec
Q 007215 363 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 442 (612)
Q Consensus 363 ~~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~P 442 (612)
+..+.-+|.- . |- .-++++.++ .++++|+-+-+ .+.+..++.++++|+. . +.+.++++...|+.+..
T Consensus 7 ~~rv~VvG~G-~--g~-~h~~a~~~~---~~~~elvav~~-~~~~~a~~~a~~~gv~--~---~~~~~~l~~~~D~v~i~ 73 (372)
T 4gmf_A 7 KQRVLIVGAK-F--GE-MYLNAFMQP---PEGLELVGLLA-QGSARSRELAHAFGIP--L---YTSPEQITGMPDIACIV 73 (372)
T ss_dssp CEEEEEECST-T--TH-HHHHTTSSC---CTTEEEEEEEC-CSSHHHHHHHHHTTCC--E---ESSGGGCCSCCSEEEEC
T ss_pred CCEEEEEehH-H--HH-HHHHHHHhC---CCCeEEEEEEC-CCHHHHHHHHHHhCCC--E---ECCHHHHhcCCCEEEEE
Confidence 3466777752 2 32 234444333 12577764443 3345677788999854 2 24556777778866554
Q ss_pred cCCC---cc-hHHHHHHHHcCCcEEeeC
Q 007215 443 SISD---VL-CTATAEALAMGKFVICAD 466 (612)
Q Consensus 443 S~~E---~f-gl~llEAMA~G~PVVas~ 466 (612)
+... +. --...+||..|++|++-.
T Consensus 74 ~p~~~h~~~~~~~a~~al~aGkhVl~EK 101 (372)
T 4gmf_A 74 VRSTVAGGAGTQLARHFLARGVHVIQEH 101 (372)
T ss_dssp CC--CTTSHHHHHHHHHHHTTCEEEEES
T ss_pred CCCcccchhHHHHHHHHHHcCCcEEEec
Confidence 3322 22 224678899999999874
No 187
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=22.27 E-value=1.3e+02 Score=28.11 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCHHHHH-hccceEEeccCCCcchHHHHHHHHcCCcEEeeCCCC
Q 007215 427 DHADDSL-HGYKVFINPSISDVLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 427 ~~~~~ll-~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~~gg 469 (612)
.+.++++ ..+|+.+..+..+..--.+.+++..|++||+...+.
T Consensus 41 ~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~~~ 84 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGA 84 (236)
T ss_dssp SSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGGG
T ss_pred CCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECccc
Confidence 3566777 578988877655444445678999999999876543
No 188
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=22.25 E-value=2.7e+02 Score=28.78 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=56.1
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCHHHHHHHHH---HcCCc-eEEe-cCCCCHHHHHhc--c
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAK---RLDLN-LNFQ-KGRDHADDSLHG--Y 436 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~---~l~l~-v~f~-g~~~~~~~ll~~--a 436 (612)
..+..+|--.- |. ..+.++.. .++++++-+-+ .+.+..++.++ ++++. +..+ +...+.+++++. .
T Consensus 21 ~rvgiIG~G~~--g~-~h~~~l~~----~~~~~lvav~d-~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~v 92 (444)
T 2ixa_A 21 VRIAFIAVGLR--GQ-THVENMAR----RDDVEIVAFAD-PDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNI 92 (444)
T ss_dssp EEEEEECCSHH--HH-HHHHHHHT----CTTEEEEEEEC-SCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTC
T ss_pred ceEEEEecCHH--HH-HHHHHHHh----CCCcEEEEEEe-CCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCC
Confidence 35667763111 11 23455543 36788765554 33444444443 45643 3333 333467788884 6
Q ss_pred ceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 437 KVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 437 Dv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
|+++..+....-.-.+++||.+|++|++-.
T Consensus 93 D~V~i~tp~~~h~~~~~~al~aGkhV~~EK 122 (444)
T 2ixa_A 93 DAVFVSSPWEWHHEHGVAAMKAGKIVGMEV 122 (444)
T ss_dssp CEEEECCCGGGHHHHHHHHHHTTCEEEECC
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCeEEEeC
Confidence 877777665555566789999999999864
No 189
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=22.10 E-value=3.1e+02 Score=21.96 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=61.2
Q ss_pred eEEEEEecCCCH-HHHHHHHHHcCCceE-EecCCCCHHHHHhc--cceEEecc-CCCcchHHHHHHHH---cCCcEEee-
Q 007215 395 FKLDVFGNGEDA-YEVQSAAKRLDLNLN-FQKGRDHADDSLHG--YKVFINPS-ISDVLCTATAEALA---MGKFVICA- 465 (612)
Q Consensus 395 ~~LvIvG~g~~~-~~l~~~~~~l~l~v~-f~g~~~~~~~ll~~--aDv~V~PS-~~E~fgl~llEAMA---~G~PVVas- 465 (612)
++++|+.+.+.. ..+.....+.|..+. ......+.-+.+.. .|+++.-. ..+.-|+.+++.+. ...|||..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 467777754432 556666677774443 34444444444433 47666543 33455777777665 35667654
Q ss_pred CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 466 DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 466 ~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
.....+ .+..+..+++. -+.+++.++|..++..
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 333222 23346677777 6889999999999954
No 190
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.96 E-value=3.3e+02 Score=25.52 Aligned_cols=58 Identities=14% Similarity=-0.049 Sum_probs=31.4
Q ss_pred ccceEEe-ccCCCcchHHHHHHHHcCCcEEeeCCCCccccccCCcEEec-CCHHHHHHHHHHHHh
Q 007215 435 GYKVFIN-PSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTY-KTSEDFVARVKEALA 497 (612)
Q Consensus 435 ~aDv~V~-PS~~E~fgl~llEAMA~G~PVVas~~gg~~~i~~~~~g~l~-~d~~~la~aI~~ll~ 497 (612)
.+|.+|+ |...+...-.+-++...|+|||..+..... ....+. ++.+....+...+++
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 61 KPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATPH-----AINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCTT-----CSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCCC-----cCceEecChHHHHHHHHHHHHH
Confidence 3565543 432223333455567789999999765321 122333 556555555666664
No 191
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=21.74 E-value=2.2e+02 Score=28.49 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHh--ccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~--~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
++++++-+-+. +.+..+ .+++++. ....+.+++++ ..|+++..+....-.-.+.+|+.+|++|++-.
T Consensus 28 ~~~~l~av~d~-~~~~~~-~a~~~g~-----~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EK 96 (359)
T 3e18_A 28 DNLEVHGVFDI-LAEKRE-AAAQKGL-----KIYESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEK 96 (359)
T ss_dssp TTEEEEEEECS-SHHHHH-HHHTTTC-----CBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCcEEEEEEcC-CHHHHH-HHHhcCC-----ceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeC
Confidence 57777655443 333333 4566663 23467788988 57888877666555556789999999999864
No 192
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.72 E-value=3.2e+02 Score=22.11 Aligned_cols=105 Identities=6% Similarity=-0.065 Sum_probs=61.9
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHcCC--ceEEecCCCCHHHHHhc-------cceEEeccC-CCcchHHHHHHHHc----
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKRLDL--NLNFQKGRDHADDSLHG-------YKVFINPSI-SDVLCTATAEALAM---- 458 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~l~l--~v~f~g~~~~~~~ll~~-------aDv~V~PS~-~E~fgl~llEAMA~---- 458 (612)
..+++|+.+.+.. ..+.....+.+. .+.......+.-+.+.. .|+++.-.. .+.-|+.+++.+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 4677788754432 455566666665 33333333233255544 577766433 35567777777654
Q ss_pred ---CCcEEeeCCC-Ccc----ccccC-CcEEec--CCHHHHHHHHHHHHhC
Q 007215 459 ---GKFVICADHP-SNE----FFRSF-PNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 459 ---G~PVVas~~g-g~~----~i~~~-~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
..|||..-.. ..+ .+..+ ..+++. -+.++|.++|.+....
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 6677665333 222 22334 667777 7999999999999843
No 193
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=21.70 E-value=2e+02 Score=28.17 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=44.2
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHH-hccceEEeccCCCcchHHHHHHHHcCCcEEeeC
Q 007215 393 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSL-HGYKVFINPSISDVLCTATAEALAMGKFVICAD 466 (612)
Q Consensus 393 ~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll-~~aDv~V~PS~~E~fgl~llEAMA~G~PVVas~ 466 (612)
++++++ +-+ .+.+..++.+++++.... ..+..+.+ ...|+++..+......-.+.+|+..|++|++-.
T Consensus 26 ~~~~l~-v~d-~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 94 (323)
T 1xea_A 26 PDIELV-LCT-RNPKVLGTLATRYRVSAT----CTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDK 94 (323)
T ss_dssp TTEEEE-EEC-SCHHHHHHHHHHTTCCCC----CSSTTGGGGGCCSEEEECSCGGGHHHHHHHHHHTTCCEEEES
T ss_pred CCceEE-EEe-CCHHHHHHHHHHcCCCcc----ccCHHHHhhcCCCEEEEECCchhHHHHHHHHHHCCCeEEEeC
Confidence 567777 433 455667777788774321 22223344 567988887765555556778999999999754
No 194
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=21.37 E-value=3.7e+02 Score=27.84 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=64.0
Q ss_pred CccCHHHHHHHHHHh-hccCCCeEEEEEecCCCH--HHHHHHHHHcCCceEEecCCCCHHHHHhcc--ceEEeccCCCcc
Q 007215 374 WAKGYRELIDLLAKH-KNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINPSISDVL 448 (612)
Q Consensus 374 ~~Kg~~~Li~A~~~l-~~~~~~~~LvIvG~g~~~--~~l~~~~~~l~l~v~f~g~~~~~~~ll~~a--Dv~V~PS~~E~f 448 (612)
...|.+.+++++-+. ... ++-.+.|+|.-... .+++++.++.|+++..+..-...+++-+.. ++.+..+.+ .
T Consensus 163 ~~~G~~~a~~al~~~~~~~-~~~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~~~~ei~~~~~A~~niv~~~~-~- 239 (437)
T 3aek_A 163 FTQGEDTCLAAMVPTLDTT-EAAELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPARRSDIEPAVGPNTRFILAQPF-L- 239 (437)
T ss_dssp TTHHHHHHHHHHGGGSCBC-CCCCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSGGGCCCBCTTCEEEESSTT-C-
T ss_pred HHHHHHHHHHHHHHHhccc-CCCcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCCCHHHHHhhhcCcEEEEECcc-H-
Confidence 356788888877443 222 34468888864333 689999999999944433333555444443 444444321 1
Q ss_pred hHHHHHHH-HcCCcEEeeCCC-CccccccCCcEEecCCHHHHHHHHHHHHhC
Q 007215 449 CTATAEAL-AMGKFVICADHP-SNEFFRSFPNCLTYKTSEDFVARVKEALAN 498 (612)
Q Consensus 449 gl~llEAM-A~G~PVVas~~g-g~~~i~~~~~g~l~~d~~~la~aI~~ll~~ 498 (612)
..+.+.| -+|+|.+..+.+ |.+ +.+++-++|.+++..
T Consensus 240 -~~~A~~Le~~GiP~i~~~~P~G~~------------~T~~~l~~la~~~g~ 278 (437)
T 3aek_A 240 -GETTGALERRGAKRIAAPFPFGEE------------GTTLWLKAVADAYGV 278 (437)
T ss_dssp -HHHHHHHHHTTCEECCCCCSCHHH------------HHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHcCCCeEecCCCcCHH------------HHHHHHHHHHHHHCC
Confidence 3334443 468998886543 222 346677777777743
No 195
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=21.30 E-value=1.4e+02 Score=27.67 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHhhccCCCeEEEEEe--cC--CC---HHHHHHHHHHcCCceEEecCC-CCH---HHHHhccceEEeccC
Q 007215 376 KGYRELIDLLAKHKNDLDGFKLDVFG--NG--ED---AYEVQSAAKRLDLNLNFQKGR-DHA---DDSLHGYKVFINPSI 444 (612)
Q Consensus 376 Kg~~~Li~A~~~l~~~~~~~~LvIvG--~g--~~---~~~l~~~~~~l~l~v~f~g~~-~~~---~~ll~~aDv~V~PS~ 444 (612)
++...+++.|- .+...-++.++. .+ +. ...+++..+++|.++..+.-. .+. .+.+..||..++|-
T Consensus 12 ~~~~~~~~~f~---~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~G- 87 (206)
T 3l4e_A 12 KDVVPLFTEFE---SNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTG- 87 (206)
T ss_dssp GGCHHHHHHHS---CCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECC-
T ss_pred cchHHHHHHHH---HHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECC-
Confidence 44555555551 222245677775 33 11 145666677888776654211 122 26788999999885
Q ss_pred CCcc---------hH--HHHHHHHcCCcEEeeCCCC
Q 007215 445 SDVL---------CT--ATAEALAMGKFVICADHPS 469 (612)
Q Consensus 445 ~E~f---------gl--~llEAMA~G~PVVas~~gg 469 (612)
-+.+ |+ .+-|+...|+|++.+-.|.
T Consensus 88 G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 88 GNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH
T ss_pred CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH
Confidence 3222 22 4778888999999998774
No 196
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=21.25 E-value=4.6e+02 Score=26.28 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=60.0
Q ss_pred EEEEEecCCC-HHHHHHHHHHcCCceEEecCCCCHH--HHHhccceEEeccCCCcchHH-HHHHHH-cCCcEEeeCCCCc
Q 007215 396 KLDVFGNGED-AYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTA-TAEALA-MGKFVICADHPSN 470 (612)
Q Consensus 396 ~LvIvG~g~~-~~~l~~~~~~l~l~v~f~g~~~~~~--~ll~~aDv~V~PS~~E~fgl~-llEAMA-~G~PVVas~~gg~ 470 (612)
++++++..++ .+.++++.++.+.++.+.......+ +.++.+|+.+..+. ..+.-. +++++. .++-+|++...|.
T Consensus 3 ki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~-~~~~~~~~l~~~~~~~Lk~I~~~~~G~ 81 (343)
T 2yq5_A 3 KIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPL-GPVDEEVVYQKLSEYGVKCIGLRIVGF 81 (343)
T ss_dssp EEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECCS-SCBCCHHHHHHHHHTTCCEEEESSSCC
T ss_pred eEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcCC-CCcCHHHHHHhccccCceEEEECceee
Confidence 5666664343 3566777777787777655443333 67888998876532 345556 899885 5888898876665
Q ss_pred cccc-c--CCcEEec-----CCHHHHHHHHHHH
Q 007215 471 EFFR-S--FPNCLTY-----KTSEDFVARVKEA 495 (612)
Q Consensus 471 ~~i~-~--~~~g~l~-----~d~~~la~aI~~l 495 (612)
+-+- + .+.|+.+ .+.++.|+....+
T Consensus 82 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l 114 (343)
T 2yq5_A 82 NTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQ 114 (343)
T ss_dssp TTBCSSTTCC--CEEECCSCSCHHHHHHHHHHH
T ss_pred cccchhHHHhCCEEEEECCCCCcHHHHHHHHHH
Confidence 5432 1 2345554 3556777654443
No 197
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=21.21 E-value=1.9e+02 Score=25.80 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=24.0
Q ss_pred HHHhccceEEeccC----CCcchHHHHH---HHHcCCcEEeeC
Q 007215 431 DSLHGYKVFINPSI----SDVLCTATAE---ALAMGKFVICAD 466 (612)
Q Consensus 431 ~ll~~aDv~V~PS~----~E~fgl~llE---AMA~G~PVVas~ 466 (612)
+.+..||++|.--. .+.=+-+..| |.|.|+|||+-.
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 78999997765421 1223335554 689999999964
No 198
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.86 E-value=3.2e+02 Score=22.62 Aligned_cols=103 Identities=7% Similarity=0.012 Sum_probs=56.6
Q ss_pred CeEEEEEecCCCH-HHHHHHHHH-cCCceEEecCCCCHH---HHHhc--cceEEeccC-CCcchHHHHHHHH---cCCcE
Q 007215 394 GFKLDVFGNGEDA-YEVQSAAKR-LDLNLNFQKGRDHAD---DSLHG--YKVFINPSI-SDVLCTATAEALA---MGKFV 462 (612)
Q Consensus 394 ~~~LvIvG~g~~~-~~l~~~~~~-l~l~v~f~g~~~~~~---~ll~~--aDv~V~PS~-~E~fgl~llEAMA---~G~PV 462 (612)
..+++|+.+.+.. ..+.....+ .+..+. +...+.+ +.+.. .|+++.-.. .+.-|+.+++.+. ..+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~--~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVV--AEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEE--EEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEE--EEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 4677777754432 344444444 343332 2233333 33333 476665432 2445666666654 36777
Q ss_pred Eee-CCCCcc----ccccCCcEEec--CCHHHHHHHHHHHHhC
Q 007215 463 ICA-DHPSNE----FFRSFPNCLTY--KTSEDFVARVKEALAN 498 (612)
Q Consensus 463 Vas-~~gg~~----~i~~~~~g~l~--~d~~~la~aI~~ll~~ 498 (612)
|.. .....+ .+..+..+++. -+.++|.++|..++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 765 333322 23346667776 6889999999999843
No 199
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.74 E-value=4.3e+02 Score=23.14 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=43.4
Q ss_pred EEEEEecCCCH---HHHHHHHHHcCCceEEecC-CCCHHHHH---hccceEEeccCCCcch--HH-HHHHHHcCCcEEee
Q 007215 396 KLDVFGNGEDA---YEVQSAAKRLDLNLNFQKG-RDHADDSL---HGYKVFINPSISDVLC--TA-TAEALAMGKFVICA 465 (612)
Q Consensus 396 ~LvIvG~g~~~---~~l~~~~~~l~l~v~f~g~-~~~~~~ll---~~aDv~V~PS~~E~fg--l~-llEAMA~G~PVVas 465 (612)
++.++|.|... ..+.......|..+.+... .......+ ..-|++|.-|.+-... +. +-.|-..|.++|+-
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~I 120 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMAL 120 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEE
Confidence 79999988765 4455555677877777652 22221222 2337888888762222 12 33445679998876
Q ss_pred -CCCC
Q 007215 466 -DHPS 469 (612)
Q Consensus 466 -~~gg 469 (612)
+..+
T Consensus 121 T~~~~ 125 (187)
T 3sho_A 121 TDSSV 125 (187)
T ss_dssp ESCTT
T ss_pred eCCCC
Confidence 4443
No 200
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=20.69 E-value=4.1e+02 Score=26.90 Aligned_cols=96 Identities=16% Similarity=0.119 Sum_probs=60.8
Q ss_pred cEEEEEeccCCccCHHHHHHHHHHhhcc----CCCeEEEEEecCCCHHHHHHHHHHcCCceEEecCCCCHHHHHhc--cc
Q 007215 364 KGAYFLGKMVWAKGYRELIDLLAKHKND----LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG--YK 437 (612)
Q Consensus 364 ~~il~vGrl~~~Kg~~~Li~A~~~l~~~----~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~~~~~~~ll~~--aD 437 (612)
..|..+|--...+ .-++++.++... .++++++-+-+ .+.+..++.+++++..-. +.+.+++++. .|
T Consensus 27 lrvgiIG~G~ig~---~h~~~~~~~~~~~~~~~~~~elvav~d-~~~~~a~~~a~~~~~~~~----y~d~~~ll~~~~vD 98 (412)
T 4gqa_A 27 LNIGLIGSGFMGQ---AHADAYRRAAMFYPDLPKRPHLYALAD-QDQAMAERHAAKLGAEKA----YGDWRELVNDPQVD 98 (412)
T ss_dssp EEEEEECCSHHHH---HHHHHHHHHHHHCTTSSSEEEEEEEEC-SSHHHHHHHHHHHTCSEE----ESSHHHHHHCTTCC
T ss_pred ceEEEEcCcHHHH---HHHHHHHhccccccccCCCeEEEEEEc-CCHHHHHHHHHHcCCCeE----ECCHHHHhcCCCCC
Confidence 4566666421112 345566554322 23456665553 556777888888885422 3567788875 47
Q ss_pred eEEeccCCCcchHHHHHHHHcCCcEEeeCC
Q 007215 438 VFINPSISDVLCTATAEALAMGKFVICADH 467 (612)
Q Consensus 438 v~V~PS~~E~fgl~llEAMA~G~PVVas~~ 467 (612)
+++..+....-.-.+++|+.+|++|++-.-
T Consensus 99 ~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 128 (412)
T 4gqa_A 99 VVDITSPNHLHYTMAMAAIAAGKHVYCEKP 128 (412)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred EEEECCCcHHHHHHHHHHHHcCCCeEeecC
Confidence 777776665556678999999999998753
No 201
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=20.63 E-value=2.4e+02 Score=28.24 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=69.0
Q ss_pred cCCeEEEeChh---hhccCC-CcEEEeCCCCCCCCCCCc----cchhhhhhccCCCCcEEEEEeccCCccCHHHHHHHHH
Q 007215 315 YCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 386 (612)
Q Consensus 315 ~ad~vI~~S~~---~~~~~~-~~i~vinGVd~~~f~~~~----~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~Li~A~~ 386 (612)
++|.++.-... ..++.+ ..+.||||-+. ...|.. --..++.+|.- ....|.|+|-. ...=...++.++.
T Consensus 113 ~~D~iviR~~~~~~~~~lA~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~-~~rva~Sl~~~~~ 189 (325)
T 1vlv_A 113 MVDAIMFRGYKQETVEKLAEYSGVPVYNGLTD-EFHPTQALADLMTIEENFGRL-KGVKVVFMGDT-RNNVATSLMIACA 189 (325)
T ss_dssp TCSEEEEESSCHHHHHHHHHHHCSCEEESCCS-SCCHHHHHHHHHHHHHHHSCS-TTCEEEEESCT-TSHHHHHHHHHHH
T ss_pred hCCEEEEECCChHHHHHHHHhCCCCEEeCCCC-CCCcHHHHHHHHHHHHHhCCc-CCcEEEEECCC-CcCcHHHHHHHHH
Confidence 45665554432 122221 34678898764 555542 22233444421 23578999974 2233456777777
Q ss_pred HhhccCCCeEEEEEecCC---CH---HHHHHHHHHcCCceEEecCCCCHHHHHhccceEEeccC
Q 007215 387 KHKNDLDGFKLDVFGNGE---DA---YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 444 (612)
Q Consensus 387 ~l~~~~~~~~LvIvG~g~---~~---~~l~~~~~~l~l~v~f~g~~~~~~~ll~~aDv~V~PS~ 444 (612)
++ ++++.+++... +. +.+++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 190 ~~-----G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvyt~~w 245 (325)
T 1vlv_A 190 KM-----GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFT---SNLEEALAGADVVYTDVW 245 (325)
T ss_dssp HT-----TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEE---SCHHHHHTTCSEEEECCC
T ss_pred HC-----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---cCHHHHHccCCEEEeccc
Confidence 66 68899999632 22 22344455777555554 667789999998877644
No 202
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.42 E-value=2.4e+02 Score=26.73 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=24.3
Q ss_pred cceEEeccCCCcchHHHHHHHHcCCcEEee-CCCCccccc
Q 007215 436 YKVFINPSISDVLCTATAEALAMGKFVICA-DHPSNEFFR 474 (612)
Q Consensus 436 aDv~V~PS~~E~fgl~llEAMA~G~PVVas-~~gg~~~i~ 474 (612)
-|+++.....+. -.++.||.-.|.|||+- |....+..+
T Consensus 158 Pdll~v~Dp~~e-~~ai~EA~~l~IPvIaivDTn~dp~~V 196 (231)
T 3bbn_B 158 PDIVIIVDQQEE-YTALRECITLGIPTICLIDTNCNPDLA 196 (231)
T ss_dssp CSEEEESCTTTT-HHHHHHHHTTTCCEEECCCSSSCCSSC
T ss_pred CCEEEEeCCccc-cHHHHHHHHhCCCEEEEecCCCCccce
Confidence 355555433222 47899999999999997 444443333
No 203
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=20.25 E-value=1.2e+02 Score=31.85 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=40.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecC--------------CCCHHHHHhccceEEeccCCC-cchHHHHHHHHc
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKG--------------RDHADDSLHGYKVFINPSISD-VLCTATAEALAM 458 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~--------------~~~~~~ll~~aDv~V~PS~~E-~fgl~llEAMA~ 458 (612)
+-++.|+|-|.--..+-+.+..+|..|.++.. ..+.++++..+|+++..+-.. .+.-..++.|.-
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt~~iI~~e~l~~MK~ 290 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHFPRMRD 290 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCTTTGGGCCT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCCcCccCHHHHhhcCC
Confidence 44555555555444444444555544443322 124568888899888754322 223345666766
Q ss_pred CCcEEeeCCC
Q 007215 459 GKFVICADHP 468 (612)
Q Consensus 459 G~PVVas~~g 468 (612)
|.-+|-...|
T Consensus 291 gAIVINvgRg 300 (436)
T 3h9u_A 291 DAIVCNIGHF 300 (436)
T ss_dssp TEEEEECSSS
T ss_pred CcEEEEeCCC
Confidence 7555544433
No 204
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=20.19 E-value=2.5e+02 Score=29.39 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=43.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHcCCceEEecC--------------CCCHHHHHhccceEEeccCC-CcchHHHHHHHHc
Q 007215 394 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKG--------------RDHADDSLHGYKVFINPSIS-DVLCTATAEALAM 458 (612)
Q Consensus 394 ~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g~--------------~~~~~~ll~~aDv~V~PS~~-E~fgl~llEAMA~ 458 (612)
+-+++|+|-|.--..+-+.++.+|..|..... ..+.++++..+|+++..+-. ..+.-..++.|.-
T Consensus 220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~atgt~~lI~~e~l~~MK~ 299 (435)
T 3gvp_A 220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKN 299 (435)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHHHHSCT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEECCCCcccCCHHHHHhcCC
Confidence 44555555554444444444444444333221 23456888999999886432 2345578888888
Q ss_pred CCcEEeeCCCC
Q 007215 459 GKFVICADHPS 469 (612)
Q Consensus 459 G~PVVas~~gg 469 (612)
|.-+|-...|.
T Consensus 300 gailINvgrg~ 310 (435)
T 3gvp_A 300 SCIVCNMGHSN 310 (435)
T ss_dssp TEEEEECSSTT
T ss_pred CcEEEEecCCC
Confidence 87666655554
No 205
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=20.05 E-value=2.7e+02 Score=28.55 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=57.9
Q ss_pred HHHHHhhccCCCeEEEEEecCCCHHHHHHHHHHcCCceEEec----------CCCCHHHHHhccceEEe--ccCCC----
Q 007215 383 DLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQK----------GRDHADDSLHGYKVFIN--PSISD---- 446 (612)
Q Consensus 383 ~A~~~l~~~~~~~~LvIvG~g~~~~~l~~~~~~l~l~v~f~g----------~~~~~~~ll~~aDv~V~--PS~~E---- 446 (612)
...++......+-++-|+|-|.--..+-+.+...|.+|..+. ...+.+++++.||+.++ |...+
T Consensus 108 ~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~ 187 (381)
T 3oet_A 108 MLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYK 187 (381)
T ss_dssp HHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTC
T ss_pred HHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCcccccc
Confidence 333333333346789999998887888888888887766543 13345589999997765 33333
Q ss_pred ---cchHHHHHHHHcCCcEEeeCCCC
Q 007215 447 ---VLCTATAEALAMGKFVICADHPS 469 (612)
Q Consensus 447 ---~fgl~llEAMA~G~PVVas~~gg 469 (612)
-+.-..+++|--|.-+|-+..|+
T Consensus 188 T~~li~~~~l~~mk~gailIN~aRG~ 213 (381)
T 3oet_A 188 TLHLADETLIRRLKPGAILINACRGP 213 (381)
T ss_dssp CTTSBCHHHHHHSCTTEEEEECSCGG
T ss_pred chhhcCHHHHhcCCCCcEEEECCCCc
Confidence 34456788888887777666665
Done!