BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007219
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 77 LKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISAL 136
+ L +FPD + LQ +D + ELP + + +GL LTL +P++I++L
Sbjct: 91 VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASL 149
Query: 137 KYLSTLNLSGLWKLREFPEIVESME---------QLLELHLEGTAIRGLPASIEFLSGLV 187
L L++ +L E PE + S + L L LE T IR LPASI L L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 188 LL-----------------------NLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNV 224
L +L+ C L++ P G LK L L CS L +
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 225 PENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLI 260
P ++ ++ LE LD+ GC L + S P I
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 16/206 (7%)
Query: 150 LREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRS 209
L +FP+ + L ++ + LP + + +GL L L L++LP +I L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 210 LKTLHLSGCSKLKNVPENLGKVES---------LEVLDI--SGCKGLLQSTSWFLHFPIT 258
L+ L + C +L +PE L ++ L+ L + +G + L S + +
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 259 LIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSR-NSFVS 317
IR + P++ P++ L L +LD+ C P G LK L L ++ ++
Sbjct: 212 KIR--NSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLT 268
Query: 318 LPASIIHLSKLGKMVLEDCKRLQSLP 343
LP I L++L K+ L C L LP
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 13 PDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETL 71
P +P LE+L L GCT L P L L LK C++L LP I + LE L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 72 VLSGCLKLKKFPDIVGSMEC 91
L GC+ L + P ++ +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPA 302
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 24/106 (22%)
Query: 32 LHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMEC 91
L + P++ KL L+L+GCT+LR +P I G
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALR-----------------------NYPPIFGGRAP 254
Query: 92 LQELHL-DGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISAL 136
L+ L L D +++ LPL I L+ L +L L GC N R+PS I+ L
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 291 GEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQP 345
G +P L+ L L+RN +LPASI L++L ++ + C L LP+P
Sbjct: 115 GLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 92 LQELHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKL 150
LQEL+L ++P ++ S LV L L IPS++ +L L L L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 151 REFPEIVESMEQLLELHLEGTAIRG-LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRS 209
E P+ + ++ L L L+ + G +P+ + + L ++L + + +P+ I L +
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 210 LKTLHLSGCSKLKNVPENLGKVESLEVLDIS 240
L L LS S N+P LG SL LD++
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 82 FPDIVGSMECLQELHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLS 140
P +GSM L L+L DI +P + L GL L L K RIP +SAL L+
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 141 TLNLS 145
++LS
Sbjct: 705 EIDLS 709
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 92 LQELHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKL 150
LQEL+L ++P ++ S LV L L IPS++ +L L L L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 151 REFPEIVESMEQLLELHLEGTAIRG-LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRS 209
E P+ + ++ L L L+ + G +P+ + + L ++L + + +P+ I L +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 210 LKTLHLSGCSKLKNVPENLGKVESLEVLDIS 240
L L LS S N+P LG SL LD++
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 82 FPDIVGSMECLQELHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLS 140
P +GSM L L+L DI +P + L GL L L K RIP +SAL L+
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 141 TLNLS 145
++LS
Sbjct: 708 EIDLS 712
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 129 IPSTISALKYLSTLNLSGLWKL-REFPEIVESMEQLLELHLEGTAIRG-LPASIEFLSGL 186
IPS+++ L YL+ L + G+ L P + + QL L++ T + G +P + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 187 VLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESL 234
V L+ +LP +I+ L +L + G +P++ G L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 198 KSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK------GLLQSTSW 251
K+L + N LR L G + PE L+VLD+S C+ G QS S
Sbjct: 31 KNLDLSFNPLRHL------GSYSFFSFPE-------LQVLDLSRCEIQTIEDGAYQSLS- 76
Query: 252 FLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGE-GAIPSDIGHLCSLKELYL 310
H TLI + + + SGL L+KL + NL P IGHL +LKEL +
Sbjct: 77 --HLS-TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNV 131
Query: 311 SRNSFVS--LPASIIHLSKLGKMVLED-------CKRLQSLPQPP 346
+ N S LP +L+ L + L C L+ L Q P
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 274 LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVL 333
LSG LRKL+I DC G+ A+ ++ L +++ L++S S VS A + K+ K+ +
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLNV 535
Query: 334 E 334
E
Sbjct: 536 E 536
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 198 KSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK------GLLQSTSW 251
K+L + N LR L G + PE L+VLD+S C+ G QS S
Sbjct: 55 KNLDLSFNPLRHL------GSYSFFSFPE-------LQVLDLSRCEIQTIEDGAYQSLS- 100
Query: 252 FLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGE-GAIPSDIGHLCSLKELYL 310
H TLI + + + SGL L+KL + NL P IGHL +LKEL +
Sbjct: 101 --HLS-TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNV 155
Query: 311 SRNSFVS--LPASIIHLSKLGKMVLED-------CKRLQSLPQPP 346
+ N S LP +L+ L + L C L+ L Q P
Sbjct: 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 92 LQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKY--LSTLNLSGLWK 149
LQEL L T + ELP + LS L +L L K FE + ISA + L+ L++ G K
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENL-CQISASNFPSLTHLSIKGNTK 337
Query: 150 LREFPE-IVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLR 208
E +E++E L EL L I S L L++ +L+SL + N
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIET--------SDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 209 SLKTLHLSGCSKLK 222
SLKT C +L+
Sbjct: 390 SLKTEAFKECPQLE 403
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 198 KSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK------GLLQSTSW 251
K+L + N LR L G + PE L+VLD+S C+ G QS S
Sbjct: 31 KNLDLSFNPLRHL------GSYSFFSFPE-------LQVLDLSRCEIQTIEDGAYQSLS- 76
Query: 252 FLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGE-GAIPSDIGHLCSLKELYL 310
H TLI + + + SGL L+KL + NL P IGHL +LKEL +
Sbjct: 77 --HLS-TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNV 131
Query: 311 SRNSFVS--LPASIIHLSKLGKMVLED-------CKRLQSLPQPP 346
+ N S LP +L+ L + L C L+ L Q P
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 92 LQELHLDGTDIKELPLSIELL--SGLVRLTLYGCKNFER--IPSTISALKYLSTLNLSGL 147
LQ L L+G + + P+ L S LVRL L GC F + + +S+ L LNLS
Sbjct: 120 LQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178
Query: 148 WKLRE------FPEIVESMEQL-LELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKS- 199
+ E + E++ QL L + + L + LV L+L D LK+
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238
Query: 200 LPRTINGLRSLKTLHLSGCSKLKNVPEN---LGKVESLEVLDISG 241
+ L L+ L LS C + +PE LG++ +L+ L + G
Sbjct: 239 CFQEFFQLNYLQHLSLSRCYDI--IPETLLELGEIPTLKTLQVFG 281
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 92 LQELHLDGTDIKELPLSIELL--SGLVRLTLYGCKNFER--IPSTISALKYLSTLNLSGL 147
LQ L L+G + + P+ L S LVRL L GC F + + +S+ L LNLS
Sbjct: 82 LQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 140
Query: 148 WKLRE------FPEIVESMEQL-LELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKS- 199
+ E + E++ QL L + + L + LV L+L D LK+
Sbjct: 141 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 200
Query: 200 LPRTINGLRSLKTLHLSGCSKLKNVPEN---LGKVESLEVLDISG 241
+ L L+ L LS C + +PE LG++ +L+ L + G
Sbjct: 201 CFQEFFQLNYLQHLSLSRCYDI--IPETLLELGEIPTLKTLQVFG 243
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 234 LEVLDISGCK------GLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISD 287
L+VLD+S C+ G QS S TLI + + + SGL L+KL +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHL----STLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 288 CNLGE-GAIPSDIGHLCSLKELYLSRNSFVS--LPASIIHLSKLGKMVLEDCKRLQSL 342
NL P IGHL +LKEL ++ N S LP +L+ L + L ++QS+
Sbjct: 111 TNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSI 165
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 301 HLCSLKELYLSRNSFVSLPASII-HLSKLGKMVLEDCKRLQSLPQPPPSIVSIRVDGCTS 359
HL L +LYL N SLP+ + L+KL ++ L + +LQS+P D T+
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGA-------FDKLTN 156
Query: 360 LETIS 364
L+T+S
Sbjct: 157 LQTLS 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 234 LEVLDISGCK------GLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISD 287
L+VLD+S C+ G QS S TLI + + + SGL L+KL +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHL----STLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 288 CNLGE-GAIPSDIGHLCSLKELYLSRNSFVS--LPASIIHLSKLGKMVLEDCKRLQSL 342
NL P IGHL +LKEL ++ N S LP +L+ L + L ++QS+
Sbjct: 110 TNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSI 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 234 LEVLDISGCK------GLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISD 287
L+VLD+S C+ G QS S H TLI + + + SGL L+KL +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLS---HLS-TLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 288 CNLGE-GAIPSDIGHLCSLKELYLSRNSFVS--LPASIIHLSKLGKMVLEDCKRLQSL 342
NL P IGHL +LKEL ++ N S LP +L+ L + L ++QS+
Sbjct: 112 TNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSI 166
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 301 HLCSLKELYLSRNSFVSLPASII-HLSKLGKMVLEDCKRLQSLPQPPPSIVSIRVDGCTS 359
HL L +LYL N SLP+ + L+KL ++ L + +LQS+P D T+
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGA-------FDKLTN 156
Query: 360 LETIS 364
L+T+S
Sbjct: 157 LQTLS 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 234 LEVLDISGCK------GLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISD 287
L+VLD+S C+ G QS S H TLI + + + SGL L+KL +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLS---HLS-TLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 288 CNLGE-GAIPSDIGHLCSLKELYLSRNSFVS--LPASIIHLSKLGKMVLEDCKRLQSL 342
NL P IGHL +LKEL ++ N S LP +L+ L + L ++QS+
Sbjct: 111 TNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSI 165
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 35/185 (18%)
Query: 158 ESMEQLLELHLEGTAIRGLPASIEFLSGLVLL---NLKDCKNLKSL-PRTINGLRSLKTL 213
+S L L L A+ G+ A+ +GL LL +L D L+ + P T GL L TL
Sbjct: 52 QSCRNLTILWLHSNALAGIDAAA--FTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 214 HLSGCSKLKNVP---ENLGKVE-------SLEVLDISGCKGLLQSTSWFLHFPITLIRRN 263
HL C + P L ++ +L+ L + + L T FLH
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLH--------- 160
Query: 264 SDPVAWRFPSL-----SGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSL 318
R PS+ GL+ L +L + ++ P L L LYL N+ L
Sbjct: 161 ----GNRIPSVPEHAFRGLHSLDRLLLHQNHVAR-VHPHAFRDLGRLMTLYLFANNLSML 215
Query: 319 PASII 323
PA ++
Sbjct: 216 PAEVL 220
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 234 LEVLDISGCK------GLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISD 287
L+VLD+S C+ G QS S TLI + + + SGL L+KL +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHL----STLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 288 CNLGE-GAIPSDIGHLCSLKELYLSRNSFVS--LPASIIHLSKLGKMVLEDCKRLQSL 342
NL P IGHL +LKEL ++ N S LP +L+ L + L ++QS+
Sbjct: 112 TNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSI 166
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 283 LDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSL 342
LD+S NL I ++I L LYL+ NS LPA I +LS L + L RL SL
Sbjct: 229 LDLS--NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSL 285
Query: 343 P 343
P
Sbjct: 286 P 286
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 296 PSDIGHLCSLKELYLSRNSFVSLPASII-HLSKLGKMVLEDCKRLQSLPQ 344
P HL +L++LY + N ++P + L++L ++ L D L+S+P+
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPR 98
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 26/112 (23%)
Query: 126 FERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSG 185
F +P +S K+L+ ++LS + +M QLL L L +R +P
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-------- 94
Query: 186 LVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVL 237
PRT +GL+SL+ L L G + + VPE G L L
Sbjct: 95 ---------------PRTFDGLKSLRLLSLHG-NDISVVPE--GAFNDLSAL 128
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 21/192 (10%)
Query: 50 LKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSI 109
+ G L LP + L T+ L LK PD+ S+E L TD+ ELP S+
Sbjct: 221 VAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPELPQSL 279
Query: 110 ELL-------SGLVRLT---LYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVES 159
L SGL L Y + I S L LN+S KL E P +
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPALPPR 338
Query: 160 MEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCS 219
+E+L+ + LP +++ L + + +P ++ LR HL+
Sbjct: 339 LERLIASFNHLAEVPELPQNLKQLH----VEYNPLREFPDIPESVEDLR--MNSHLAEVP 392
Query: 220 KLKNVPENLGKV 231
+L P+NL ++
Sbjct: 393 EL---PQNLKQL 401
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 44/162 (27%)
Query: 191 LKDCKNLKSLP-----------RTINGLRSLKTLHLSGCSKLKNVP-ENLGKVESLEVLD 238
+D NLKSL R +GL SL+ L L C+ L ++P E L + L VL
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLR 182
Query: 239 ISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSL-------------SGLYCLR--KL 283
+ H I IR S +R L + LY L L
Sbjct: 183 LR-------------HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229
Query: 284 DISDCNLGEGAIPS-DIGHLCSLKELYLSRNSFVSLPASIIH 324
I+ CNL A+P + HL L+ L LS N ++ S++H
Sbjct: 230 SITHCNLT--AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 40/213 (18%)
Query: 56 LRALPAKI-FMKSLETLVLSGCLKLKKFPDI----VGSMECLQELHLDGTDIKELPLS-- 108
L LP+ I M SL+ LVL+ F + S L++L++ G ++++L L
Sbjct: 289 LNGLPSGIEGMNSLKKLVLNA----NSFDQLCQINAASFPSLRDLYIKG-NMRKLDLGTR 343
Query: 109 -IELLSGLVRLTLY-------GCKNFERIPSTISALKYLSTLNLS-----GL--WKLREF 153
+E L L +L L C N + + L++L LNLS GL +E
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQ-----LKNLRHLQYLNLSYNEPLGLEDQAFKEC 398
Query: 154 PEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTL 213
P++ +LL++ ++ + + L L +LNL C S + GL+ L+ L
Sbjct: 399 PQL-----ELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL 453
Query: 214 HLSGCSKLKNVPEN---LGKVESLEVLDISGCK 243
+L G S L V SLE+L +S C
Sbjct: 454 NLQGNSFQDGSISKTNLLQMVGSLEILILSSCN 486
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 3 LKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK 62
+ +NL + S V L G L EI V FL L+ CT+L+ L
Sbjct: 213 FSYGKNLKKITITSGVTTLGDGAFYGXKALDEIAIPKNVTSIGSFL-LQNCTALKTLNFY 271
Query: 63 IFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYG 122
+K++ L+ SGC L K ++E L+ D +L S+ L + L + +Y
Sbjct: 272 AKVKTVPYLLCSGCSNLTKVVXDNSAIETLEPRVF--XDCVKLS-SVTLPTALKTIQVYA 328
Query: 123 CKNFERIPSTIS 134
KN + + STIS
Sbjct: 329 FKNCKAL-STIS 339
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 281 RKLDISDCNLGEGAIPSDIGH-LCSLKELYLSRNSFVSLPASII-HLSKLGKMVLEDCKR 338
+KLD+ L ++PS H L L+ LYL+ N +LPA I L L + + D K
Sbjct: 40 KKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK- 96
Query: 339 LQSLP 343
LQ+LP
Sbjct: 97 LQALP 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,343,975
Number of Sequences: 62578
Number of extensions: 764764
Number of successful extensions: 1600
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 92
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)