Query 007219
Match_columns 612
No_of_seqs 441 out of 4102
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 20:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9.2E-41 2E-45 396.1 38.3 448 41-549 609-1104(1153)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-30 2.4E-35 309.2 23.1 341 16-357 137-485 (968)
3 PLN00113 leucine-rich repeat r 100.0 4.5E-30 9.7E-35 304.0 23.0 363 1-364 193-588 (968)
4 PLN03210 Resistant to P. syrin 99.9 9E-25 2E-29 259.9 24.0 300 9-343 601-910 (1153)
5 KOG0444 Cytoskeletal regulator 99.9 6.1E-28 1.3E-32 248.5 -5.6 326 9-364 44-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.7E-26 8E-31 235.5 -3.8 299 14-344 73-380 (1255)
7 KOG4194 Membrane glycoprotein 99.9 6.2E-24 1.3E-28 218.1 3.0 332 1-338 83-428 (873)
8 KOG4194 Membrane glycoprotein 99.9 2E-22 4.4E-27 207.1 4.5 331 21-356 80-425 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 5.6E-24 1.2E-28 209.8 -10.8 174 14-194 132-307 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 6.4E-23 1.4E-27 202.4 -6.9 235 2-243 166-469 (565)
11 KOG0618 Serine/threonine phosp 99.8 1.4E-20 3E-25 203.4 -3.2 171 161-335 241-439 (1081)
12 PRK15387 E3 ubiquitin-protein 99.7 3E-17 6.6E-22 182.9 17.1 54 279-337 403-456 (788)
13 KOG0618 Serine/threonine phosp 99.7 1.6E-19 3.5E-24 195.2 -3.2 218 112-360 240-489 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 1.1E-16 2.4E-21 178.4 17.6 261 1-324 206-467 (788)
15 PRK15370 E3 ubiquitin-protein 99.7 5.9E-16 1.3E-20 173.6 12.8 72 44-122 200-271 (754)
16 PRK15370 E3 ubiquitin-protein 99.6 1.3E-15 2.8E-20 170.9 13.2 245 43-337 178-426 (754)
17 KOG0617 Ras suppressor protein 99.6 8.6E-17 1.9E-21 142.0 -4.0 172 55-230 22-194 (264)
18 KOG0617 Ras suppressor protein 99.5 2.6E-16 5.7E-21 139.0 -3.1 169 9-182 23-194 (264)
19 cd00116 LRR_RI Leucine-rich re 99.5 2E-15 4.3E-20 156.0 0.8 159 161-336 137-317 (319)
20 cd00116 LRR_RI Leucine-rich re 99.5 4.1E-15 9E-20 153.6 2.3 233 86-337 19-289 (319)
21 KOG4237 Extracellular matrix p 99.5 2.3E-15 4.9E-20 149.3 -2.7 236 8-243 78-357 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.5 4.4E-14 9.6E-19 161.0 6.8 323 8-367 512-849 (889)
23 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.6E-18 137.2 -2.0 269 54-346 56-342 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.1 6.8E-11 1.5E-15 135.2 6.4 247 90-363 523-786 (889)
25 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.2E-16 127.7 -3.2 206 54-337 60-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.0 2.3E-11 5E-16 126.3 -3.4 187 2-195 81-271 (722)
27 COG4886 Leucine-rich repeat (L 98.9 3.1E-09 6.6E-14 113.3 9.6 193 70-291 97-290 (394)
28 COG4886 Leucine-rich repeat (L 98.9 8.4E-10 1.8E-14 117.6 5.3 198 23-227 97-296 (394)
29 KOG3207 Beta-tubulin folding c 98.9 1.9E-10 4E-15 116.3 -0.9 136 40-176 118-261 (505)
30 KOG3207 Beta-tubulin folding c 98.9 4.5E-10 9.8E-15 113.5 1.6 182 133-335 142-335 (505)
31 KOG1259 Nischarin, modulator o 98.9 3.8E-10 8.3E-15 108.6 0.7 134 160-320 283-416 (490)
32 KOG1909 Ran GTPase-activating 98.7 1.5E-09 3.3E-14 107.0 -2.5 215 15-245 26-283 (382)
33 PF14580 LRR_9: Leucine-rich r 98.6 3.9E-08 8.5E-13 90.9 5.9 17 158-174 110-126 (175)
34 KOG1909 Ran GTPase-activating 98.6 4.9E-09 1.1E-13 103.5 -1.2 238 65-338 29-310 (382)
35 KOG1259 Nischarin, modulator o 98.6 1E-08 2.2E-13 98.9 1.0 102 90-195 284-385 (490)
36 PRK15386 type III secretion pr 98.6 3E-07 6.4E-12 95.3 10.3 73 157-240 48-120 (426)
37 PF14580 LRR_9: Leucine-rich r 98.5 5.3E-08 1.1E-12 90.1 4.0 133 10-168 10-147 (175)
38 KOG4341 F-box protein containi 98.5 3.2E-09 7E-14 106.9 -4.6 138 183-341 293-441 (483)
39 KOG4341 F-box protein containi 98.4 9.5E-09 2.1E-13 103.6 -4.1 210 111-341 188-416 (483)
40 KOG2120 SCF ubiquitin ligase, 98.4 1.3E-08 2.7E-13 98.4 -3.6 177 91-288 186-373 (419)
41 PLN03150 hypothetical protein; 98.4 7.8E-07 1.7E-11 99.9 8.6 105 139-243 420-526 (623)
42 PLN03150 hypothetical protein; 98.4 1.1E-06 2.3E-11 98.8 9.2 111 114-224 419-531 (623)
43 PRK15386 type III secretion pr 98.4 2.1E-06 4.5E-11 89.1 10.3 61 18-83 51-111 (426)
44 KOG2120 SCF ubiquitin ligase, 98.2 4.6E-08 1E-12 94.6 -5.9 176 162-359 186-375 (419)
45 PF13855 LRR_8: Leucine rich r 98.0 7.1E-06 1.5E-10 62.1 4.5 57 67-124 2-60 (61)
46 PF13855 LRR_8: Leucine rich r 98.0 7.6E-06 1.6E-10 61.9 4.1 57 44-101 2-60 (61)
47 KOG0531 Protein phosphatase 1, 98.0 1.6E-06 3.4E-11 93.0 -0.2 174 15-196 91-267 (414)
48 KOG0531 Protein phosphatase 1, 98.0 1.6E-06 3.4E-11 93.0 -0.3 107 65-176 94-201 (414)
49 KOG3665 ZYG-1-like serine/thre 97.8 4.2E-06 9.1E-11 94.0 0.4 149 42-191 121-282 (699)
50 KOG1859 Leucine-rich repeat pr 97.8 6.3E-07 1.4E-11 96.3 -6.0 183 106-319 102-295 (1096)
51 KOG1859 Leucine-rich repeat pr 97.7 3.3E-07 7.2E-12 98.3 -10.0 126 91-220 165-291 (1096)
52 PF12799 LRR_4: Leucine Rich r 97.5 9E-05 2E-09 51.7 3.3 39 279-319 2-40 (44)
53 KOG3665 ZYG-1-like serine/thre 97.5 7.3E-05 1.6E-09 84.1 4.2 131 112-243 121-261 (699)
54 PF12799 LRR_4: Leucine Rich r 97.5 7.3E-05 1.6E-09 52.2 2.5 42 303-345 1-42 (44)
55 KOG1947 Leucine rich repeat pr 97.5 1.9E-05 4.2E-10 86.2 -1.4 132 19-150 161-308 (482)
56 KOG4579 Leucine-rich repeat (L 97.3 1.4E-05 3E-10 69.1 -3.7 82 41-124 51-134 (177)
57 KOG2982 Uncharacterized conser 97.3 5.4E-05 1.2E-09 73.7 -0.3 85 278-364 199-285 (418)
58 KOG2982 Uncharacterized conser 97.3 0.0003 6.5E-09 68.7 4.5 85 159-243 69-157 (418)
59 KOG1947 Leucine rich repeat pr 97.2 6.6E-05 1.4E-09 82.0 -1.3 35 65-99 187-223 (482)
60 COG5238 RNA1 Ran GTPase-activa 97.1 0.00014 3E-09 70.1 -0.1 184 17-220 28-254 (388)
61 KOG4579 Leucine-rich repeat (L 96.9 6.8E-05 1.5E-09 64.9 -2.8 88 89-178 52-140 (177)
62 COG5238 RNA1 Ran GTPase-activa 96.6 0.0016 3.5E-08 63.0 3.3 59 278-336 185-252 (388)
63 KOG1644 U2-associated snRNP A' 96.5 0.005 1.1E-07 57.2 5.9 106 41-147 40-150 (233)
64 KOG1644 U2-associated snRNP A' 96.1 0.0095 2E-07 55.4 5.0 102 19-124 42-151 (233)
65 KOG2739 Leucine-rich acidic nu 95.9 0.0066 1.4E-07 58.7 3.3 39 133-171 112-153 (260)
66 KOG2739 Leucine-rich acidic nu 95.3 0.015 3.3E-07 56.2 3.4 65 274-339 61-129 (260)
67 PF00560 LRR_1: Leucine Rich R 95.1 0.0097 2.1E-07 34.6 1.0 21 304-324 1-21 (22)
68 KOG2123 Uncharacterized conser 94.7 0.0018 3.9E-08 62.8 -4.6 80 42-124 18-99 (388)
69 PF13306 LRR_5: Leucine rich r 94.3 0.22 4.7E-06 43.4 8.2 100 14-121 7-111 (129)
70 PF00560 LRR_1: Leucine Rich R 93.6 0.031 6.7E-07 32.5 0.8 18 92-109 2-19 (22)
71 PF13504 LRR_7: Leucine rich r 92.9 0.064 1.4E-06 29.0 1.3 16 304-319 2-17 (17)
72 PF13306 LRR_5: Leucine rich r 92.9 0.43 9.4E-06 41.5 7.5 33 41-75 10-44 (129)
73 KOG2123 Uncharacterized conser 92.6 0.0097 2.1E-07 57.9 -3.6 65 274-341 37-103 (388)
74 PF13504 LRR_7: Leucine rich r 89.6 0.23 4.9E-06 26.8 1.4 14 92-105 3-16 (17)
75 smart00369 LRR_TYP Leucine-ric 88.6 0.37 8E-06 29.1 2.0 21 302-322 1-21 (26)
76 smart00370 LRR Leucine-rich re 88.6 0.37 8E-06 29.1 2.0 21 302-322 1-21 (26)
77 KOG3864 Uncharacterized conser 88.5 0.055 1.2E-06 50.5 -2.5 79 21-99 103-185 (221)
78 KOG3864 Uncharacterized conser 86.3 0.18 3.8E-06 47.2 -0.6 67 273-339 120-189 (221)
79 smart00369 LRR_TYP Leucine-ric 82.1 1.1 2.4E-05 26.9 1.8 20 89-108 1-20 (26)
80 smart00370 LRR Leucine-rich re 82.1 1.1 2.4E-05 26.9 1.8 20 89-108 1-20 (26)
81 KOG4308 LRR-containing protein 74.0 0.046 9.9E-07 59.2 -10.3 177 68-244 89-302 (478)
82 smart00364 LRR_BAC Leucine-ric 72.2 2.3 4.9E-05 25.8 1.2 18 303-320 2-19 (26)
83 smart00367 LRR_CC Leucine-rich 64.7 4.4 9.5E-05 24.3 1.4 16 18-33 1-16 (26)
84 KOG0473 Leucine-rich repeat pr 64.2 0.21 4.5E-06 47.7 -6.8 59 136-195 64-122 (326)
85 KOG0473 Leucine-rich repeat pr 62.6 0.27 5.7E-06 47.0 -6.4 84 39-124 38-122 (326)
86 KOG4308 LRR-containing protein 61.1 0.23 4.9E-06 53.9 -8.3 89 135-223 202-305 (478)
87 PF13516 LRR_6: Leucine Rich r 59.7 4.6 9.9E-05 23.6 0.8 14 303-316 2-15 (24)
88 smart00365 LRR_SD22 Leucine-ri 57.8 8.2 0.00018 23.4 1.7 16 303-318 2-17 (26)
89 KOG3763 mRNA export factor TAP 43.1 9.5 0.00021 41.3 0.5 19 437-455 440-458 (585)
90 smart00368 LRR_RI Leucine rich 37.3 25 0.00055 21.5 1.6 14 303-316 2-15 (28)
91 KOG3763 mRNA export factor TAP 28.3 29 0.00063 37.8 1.3 81 158-238 215-307 (585)
92 PF03604 DNA_RNApol_7kD: DNA d 21.6 30 0.00064 22.2 -0.1 22 520-541 10-31 (32)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.2e-41 Score=396.09 Aligned_cols=448 Identities=25% Similarity=0.326 Sum_probs=303.2
Q ss_pred cCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCCc-CCcccccccccCCCCcEE
Q 007219 41 VHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGT-DIKELPLSIELLSGLVRL 118 (612)
Q Consensus 41 ~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L 118 (612)
...+|+.|++.++ .+..+|..+. +++|++|+|++|..++.+|. +..+++|++|+|.++ .+.++|.+++++++|+.|
T Consensus 609 ~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 3456666666663 3555555554 66777777776666666664 556677777777664 355677777777777777
Q ss_pred eccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCC
Q 007219 119 TLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLK 198 (612)
Q Consensus 119 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~ 198 (612)
++++|..++.+|..+ .+++|+.|++++|..++.+|.. ..+|++|++++|.+..+|..+ .+++|+.|.+.++....
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh
Confidence 777777777777654 5677777777777666666643 356777777777777777665 46777777777654211
Q ss_pred ------ccc-ccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccC
Q 007219 199 ------SLP-RTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRF 271 (612)
Q Consensus 199 ------~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 271 (612)
.++ ......++|+.|++++|..+..+|..++++++|+.|++++|..+. .+
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-----------------------~L 818 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-----------------------TL 818 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-----------------------ee
Confidence 111 112235789999999999999999999999999999999987543 23
Q ss_pred CCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhccccccccccccccccccCCCCC---CC
Q 007219 272 PSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQPP---PS 348 (612)
Q Consensus 272 ~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~lp---~s 348 (612)
|....+++|+.|+|++|... ..+|.. .++|+.|+|++|.++.+|.++..+++|+.|++.+|..|+.+|..+ ++
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L-~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRL-RTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CCCCCccccCEEECCCCCcc-cccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 44346789999999999764 234442 468999999999999999999999999999999999999998654 56
Q ss_pred ccEEeccCCCCcceecCcccc-----------------ccccccceeeccccccCccchhHHHHHHHHhhcccCccEEEe
Q 007219 349 IVSIRVDGCTSLETISCVLKL-----------------CKLNRTYIHCMDCFKFNGLGFSMLKEYLEAVSNLRQRSSIVV 411 (612)
Q Consensus 349 L~~L~i~~C~~L~~l~~~~~~-----------------~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 411 (612)
|+.+++.+|++|+.++....+ ..+.|.+|.++++.. .++.. .....+++
T Consensus 895 L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a-----------~l~~~---~~~~~~~l 960 (1153)
T PLN03210 895 LETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA-----------LLQQQ---SIFKQLIL 960 (1153)
T ss_pred CCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh-----------hhccc---ccceEEEC
Confidence 778899999999877532211 112344554443221 11111 11245789
Q ss_pred CCCCCCccccccCCCceEE-EECCCCCCCCCCeEEEEEEEEEeecCCccccccccccccceeEecCCCceeeeccccccc
Q 007219 412 PGSEIPEWFMYQNKGSSIT-LKRPPDSFNKNKVVGYAICCVFHVNKHSTRIRMLRSYPTKCLTWHLKGSRVGDSTTFREK 490 (612)
Q Consensus 412 pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (612)
||.++|+||.||+.|++++ |.+|+.|+... |.||++|+|+++...... ...+.+++.|.+....|..+..
T Consensus 961 ~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~-~~~f~~c~v~~~~~~~~~-~~~~~~~~~c~~~~~~~~~~~~------- 1031 (1153)
T PLN03210 961 SGEEVPSYFTHRTTGASLTNIPLLHISPCQP-FFRFRACAVVDSESFFII-SVSFDIQVCCRFIDRLGNHFDS------- 1031 (1153)
T ss_pred CCccCchhccCCcccceeeeeccCCcccCCC-ccceEEEEEEecCccccC-CCceeEEEEEEEECCCCCcccc-------
Confidence 9999999999999999998 99999998777 999999999987653111 1123444566665554543321
Q ss_pred CCCCCCCeEEEEEeecccee---------cc-----cC-CceeeEEEe--ec-CCceEEeeeeEEeeecCCCCCCCC
Q 007219 491 FGQDGSDHLWLLYLPRQEQE---------CY-----EH-NWHFEFQPL--WG-PGLEVKKCGFHPVYIHQVGEEFNQ 549 (612)
Q Consensus 491 ~~~~~sdhl~~~~~~~~~~~---------~~-----~~-~~~~~~~~~--~~-~~~~vk~cGv~lvy~~~~~~~~~~ 549 (612)
...+|+|+.|.....+. .. +. +...++.|. .. ...+||+||||++|+++.. +++.
T Consensus 1032 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~-~~~~ 1104 (1153)
T PLN03210 1032 ---PYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSL-NNTL 1104 (1153)
T ss_pred ---CCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCc-ccCC
Confidence 34556665554432221 00 00 111234443 22 1248999999999976655 4444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.1e-30 Score=309.21 Aligned_cols=341 Identities=24% Similarity=0.295 Sum_probs=215.5
Q ss_pred CCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCccccCCCCCCe
Q 007219 16 SRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQE 94 (612)
Q Consensus 16 ~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~ 94 (612)
+.+++|++|+|++|.....+|..++.+++|++|++++|.....+|..+. +++|++|++++|...+.+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 3455666666666555455666666777777777776655555665554 667777777776666666666677777777
Q ss_pred eecCCcCCc-ccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCC
Q 007219 95 LHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAI 173 (612)
Q Consensus 95 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i 173 (612)
|++++|.+. .+|..++++++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+.++++|++|++++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 777777666 5666677777777777777666566666677777777777777766666666677777777777777766
Q ss_pred C-CCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCccc
Q 007219 174 R-GLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWF 252 (612)
Q Consensus 174 ~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 252 (612)
. .+|..+..+++|+.|++.+|...+.+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|..........
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 5 466666777777777777777666677777777777777777777766777777777777777777665322111111
Q ss_pred ccccc-eecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-ccchhhhcccccc
Q 007219 253 LHFPI-TLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-SLPASIIHLSKLG 329 (612)
Q Consensus 253 ~~~~~-~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~L~~L~ 329 (612)
..... .......+.....+|. +..+++|+.|++++|++. +.+|..+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS-GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee-eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 11111 1112222222333444 566777777777777764 456666777777777777777766 4555566667777
Q ss_pred ccccccccccccCCCC--CCCccEEeccCC
Q 007219 330 KMVLEDCKRLQSLPQP--PPSIVSIRVDGC 357 (612)
Q Consensus 330 ~L~l~~c~~L~~lp~l--p~sL~~L~i~~C 357 (612)
.|++++|.....+|.. .++|+.|++.+|
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCC
Confidence 7777766655555432 234555555444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=4.5e-30 Score=304.00 Aligned_cols=363 Identities=21% Similarity=0.244 Sum_probs=255.2
Q ss_pred CCCCCCcCCccCC-CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcC
Q 007219 1 MSLKHSENLIRTP-DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLK 78 (612)
Q Consensus 1 l~Ls~~~~L~~~p-~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~ 78 (612)
|||++++....+| .++.+++|+.|+|++|.....+|..++.+++|++|++++|.....+|..+. +++|++|++++|..
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 4677776444556 578888999999988877778888888899999999988776667777666 88888888888877
Q ss_pred CcccCccccCCCCCCeeecCCcCCc-ccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhh
Q 007219 79 LKKFPDIVGSMECLQELHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIV 157 (612)
Q Consensus 79 l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l 157 (612)
.+.+|..+.++++|++|++++|.+. .+|..+..+++|+.|++.+|.....+|..+..+++|+.|++++|...+.+|..+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 7778888888888888888888876 677777888888888888887777777778888888888888887777777777
Q ss_pred hccccccEEEccCcCCC-CCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcE
Q 007219 158 ESMEQLLELHLEGTAIR-GLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEV 236 (612)
Q Consensus 158 ~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 236 (612)
+.+++|+.|++++|.+. .+|.++..+++|+.|++.+|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 78888888888777765 35666666666666666666655555555555666666666655555555555555555555
Q ss_pred EeccCCCCCc------------------------ccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCC
Q 007219 237 LDISGCKGLL------------------------QSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLG 291 (612)
Q Consensus 237 L~l~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~ 291 (612)
|++++|.... ..................+......|. +..+++|+.|+|++|.+.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 5555443211 111100000011122223333334444 667778888888888774
Q ss_pred CCCCCccccCcCCCCEEeccCCCcc-ccchhhhccccccccccccccccccCCCC---CCCccEEeccCCCCcceec
Q 007219 292 EGAIPSDIGHLCSLKELYLSRNSFV-SLPASIIHLSKLGKMVLEDCKRLQSLPQP---PPSIVSIRVDGCTSLETIS 364 (612)
Q Consensus 292 ~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~L~~L~~L~l~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~ 364 (612)
+.+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.....+|.. .++|+.|++++|+-...++
T Consensus 513 -~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 513 -GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred -eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 567778888888888888888887 67778888888888888888777777743 3568888888887655554
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=9e-25 Score=259.87 Aligned_cols=300 Identities=29% Similarity=0.448 Sum_probs=254.9
Q ss_pred CccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccC
Q 007219 9 LIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGS 88 (612)
Q Consensus 9 L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~ 88 (612)
++.+|.--...+|++|++.++ .+..++..+..+++|+.|+|++|..++.+|....+++|++|+|++|..+..+|..+++
T Consensus 601 l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 601 LRCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCCCCcCCccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhc
Confidence 456665446789999999985 5778888899999999999999999999997555999999999999999999999999
Q ss_pred CCCCCeeecCCc-CCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEE
Q 007219 89 MECLQELHLDGT-DIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELH 167 (612)
Q Consensus 89 l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~ 167 (612)
+++|+.|+++++ .++.+|..+ ++++|+.|++++|..++.+|.. ..+|+.|+++++. +..+|..+ .+++|++|.
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELI 753 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-ccccccccc
Confidence 999999999985 678899876 7999999999999988888863 4689999999985 56777655 578899998
Q ss_pred ccCcCCCCCC--------hhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEec
Q 007219 168 LEGTAIRGLP--------ASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDI 239 (612)
Q Consensus 168 L~~~~i~~lp--------~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l 239 (612)
+.++....++ .....+++|+.|++++|..+..+|..++++++|+.|++++|..++.+|..+ .+++|+.|++
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 8875433322 223345789999999999999999999999999999999999999999877 7999999999
Q ss_pred cCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCC-Ccccc
Q 007219 240 SGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRN-SFVSL 318 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n-~l~~l 318 (612)
++|..+. .+|. ..++|+.|+|++|.+.+ +|.++..+++|+.|+|++| ++..+
T Consensus 833 s~c~~L~-----------------------~~p~--~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 833 SGCSRLR-----------------------TFPD--ISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCCccc-----------------------cccc--cccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCcc
Confidence 9997543 1222 13579999999999964 9999999999999999996 57899
Q ss_pred chhhhccccccccccccccccccCC
Q 007219 319 PASIIHLSKLGKMVLEDCKRLQSLP 343 (612)
Q Consensus 319 p~~i~~L~~L~~L~l~~c~~L~~lp 343 (612)
|..+..+++|+.|++.+|..|+.++
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CcccccccCCCeeecCCCccccccc
Confidence 9999999999999999999998654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.1e-28 Score=248.54 Aligned_cols=326 Identities=28% Similarity=0.359 Sum_probs=203.7
Q ss_pred CccCC-CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCC-CCccCCCccC-CCCccEEEccCCcCCcccCcc
Q 007219 9 LIRTP-DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCT-SLRALPAKIF-MKSLETLVLSGCLKLKKFPDI 85 (612)
Q Consensus 9 L~~~p-~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~-~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~ 85 (612)
|..+| .++.+.+|+.|.+.. +.+..++..+..++.|+.+.++.++ +-..+|..++ +..|.+|+|++|. ++..|..
T Consensus 44 L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~ 121 (1255)
T KOG0444|consen 44 LEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN 121 (1255)
T ss_pred hhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchh
Confidence 44455 255566666666655 3445555556666666666665532 2234666666 7777777777765 6677777
Q ss_pred ccCCCCCCeeecCCcCCcccccc-cccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcccccc
Q 007219 86 VGSMECLQELHLDGTDIKELPLS-IELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLL 164 (612)
Q Consensus 86 ~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~ 164 (612)
+.+.+++-+|+|++|+|..+|.+ +-++..|-.|+|++|+ ++.+|+.+..+..|++|.|++|+....--..+..|++|+
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 77777777777777777777755 4467777777777654 677777777777777777777754333223344556666
Q ss_pred EEEccCcCCC--CCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCC
Q 007219 165 ELHLEGTAIR--GLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGC 242 (612)
Q Consensus 165 ~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~ 242 (612)
.|++++++-+ .+|.++..+.+|..++++.| .+..+|+.+.++++|+.|++++|.+ +.+....+.-.+|+.|+++.|
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccc
Confidence 6666666433 46777777777777777654 3556666677777777777776543 233333344456666666665
Q ss_pred CCCcccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchh
Q 007219 243 KGLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPAS 321 (612)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~ 321 (612)
... .+|. +..++.|+.|.+.+|++.-+.+|..++.+..|+.+..++|.+.-+|++
T Consensus 279 QLt------------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 279 QLT------------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred hhc------------------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence 532 2344 556666777777777666666777777777777777777777777777
Q ss_pred hhccccccccccccccccccCCC---CCCCccEEeccCCCCcceec
Q 007219 322 IIHLSKLGKMVLEDCKRLQSLPQ---PPPSIVSIRVDGCTSLETIS 364 (612)
Q Consensus 322 i~~L~~L~~L~l~~c~~L~~lp~---lp~sL~~L~i~~C~~L~~l~ 364 (612)
+..|.+|+.|.++.+ .|-.+|+ +.+-|+.|++...|+|-.-+
T Consensus 335 lcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 777777777766543 4444554 34566666666666665443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.7e-26 Score=235.50 Aligned_cols=299 Identities=25% Similarity=0.332 Sum_probs=261.5
Q ss_pred CCCCCCCccEEeccCCCCc-cccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCcc-ccCCC
Q 007219 14 DFSRVPNLEQLILEGCTRL-HEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDI-VGSME 90 (612)
Q Consensus 14 ~l~~l~~L~~L~L~~c~~l-~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~-~~~l~ 90 (612)
.++.+|.|+.+++..++.- .-||..|..++.|.+|||+. +.++..|.... .+++-+|+|++|+ ++.+|.. +-++.
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLt 150 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLT 150 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhH
Confidence 5888999999999875432 36899999999999999999 68899999887 8999999999987 7778864 56899
Q ss_pred CCCeeecCCcCCcccccccccCCCCcEEeccCCCCC----cccccccccCCCCCEEecCCCCC-CccchhhhhccccccE
Q 007219 91 CLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNF----ERIPSTISALKYLSTLNLSGLWK-LREFPEIVESMEQLLE 165 (612)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~L~~~~~-l~~~p~~l~~l~~L~~ 165 (612)
.|-.|+|++|.+..+|+.+..+..|++|.|++|... +.+| .+++|++|.+++... +..+|..+..+.+|+.
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc----cchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 999999999999999999999999999999998753 4444 477889999988754 4569999999999999
Q ss_pred EEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCC
Q 007219 166 LHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGL 245 (612)
Q Consensus 166 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 245 (612)
++++.|.+..+|..+-.+++|+.|+|++|+. +.+...++...+|++|+++.| .++.+|+.+.+++.|+.|.+.+|+..
T Consensus 227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 227 VDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccccccCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCccc
Confidence 9999999999999999999999999999864 455556677899999999996 56789999999999999999887733
Q ss_pred cccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhc
Q 007219 246 LQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIH 324 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~ 324 (612)
- ..+|+ ++.+..|+.+...+|.+ +.+|+.++.|..|+.|.|+.|++.++|..|.-
T Consensus 305 F----------------------eGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl 360 (1255)
T KOG0444|consen 305 F----------------------EGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL 360 (1255)
T ss_pred c----------------------cCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhhhhh
Confidence 2 24566 88899999999999998 56999999999999999999999999999999
Q ss_pred cccccccccccccccccCCC
Q 007219 325 LSKLGKMVLEDCKRLQSLPQ 344 (612)
Q Consensus 325 L~~L~~L~l~~c~~L~~lp~ 344 (612)
|+-|+.|++..+++|..-|.
T Consensus 361 L~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cCCcceeeccCCcCccCCCC
Confidence 99999999999999986554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=6.2e-24 Score=218.10 Aligned_cols=332 Identities=22% Similarity=0.226 Sum_probs=195.6
Q ss_pred CCCCCCcCCccCC--CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCcc-C-CCCccEEEccCC
Q 007219 1 MSLKHSENLIRTP--DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKI-F-MKSLETLVLSGC 76 (612)
Q Consensus 1 l~Ls~~~~L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~-~-l~~L~~L~L~~c 76 (612)
||||+.+ |..+- .|-.+|||+++++.. +.+..||...+-..+|+.|+|.. +.+.++...- . ++.|+.|+|+.|
T Consensus 83 LdlsnNk-l~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 83 LDLSNNK-LSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeccccc-cccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhhc
Confidence 4566654 43332 356778888888776 56677777666666777777776 3444443322 1 677777777776
Q ss_pred cCCcccC-ccccCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCccccc-ccccCCCCCEEecCCCCCCccc
Q 007219 77 LKLKKFP-DIVGSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFERIPS-TISALKYLSTLNLSGLWKLREF 153 (612)
Q Consensus 77 ~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~ 153 (612)
. +..+| ..+..-.+|++|+|++|.|+.+. ..|..+.+|..|.|++|.. ..+|. .|..++.|+.|+|..|..-..-
T Consensus 160 ~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 160 L-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred h-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccccceeeeh
Confidence 5 33333 23444467777777777777664 3466677777777777653 44443 3455777777777766433222
Q ss_pred hhhhhccccccEEEccCcCCCCCChh-hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCC
Q 007219 154 PEIVESMEQLLELHLEGTAIRGLPAS-IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVE 232 (612)
Q Consensus 154 p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~ 232 (612)
.-.|..+++|+.|.+..|.|..+.+. +-.+.++++|+|..|+....-..++.++++|+.|++++|.+-..-++....++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 44566777777777777777766543 44567777777777765555555667777777777777776666666666677
Q ss_pred CCcEEeccCCCCCcccCcccccccce-ecccCCCCcc-ccCCCCCCCCcccEEeccCCCCCCCCCC---ccccCcCCCCE
Q 007219 233 SLEVLDISGCKGLLQSTSWFLHFPIT-LIRRNSDPVA-WRFPSLSGLYCLRKLDISDCNLGEGAIP---SDIGHLCSLKE 307 (612)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~l~~l~~L~~L~Ls~~~l~~~~ip---~~l~~l~sL~~ 307 (612)
+|+.|+++.|.........+..+..+ ......+... ..--.+.++++|++|||++|.+. ..+- ..+..+++|+.
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls-~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS-WCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE-EEEecchhhhccchhhhh
Confidence 77777777666433222211111110 0001111100 00011556667777777776652 1111 22444677777
Q ss_pred EeccCCCccccch-hhhccccccccccccccc
Q 007219 308 LYLSRNSFVSLPA-SIIHLSKLGKMVLEDCKR 338 (612)
Q Consensus 308 L~Ls~n~l~~lp~-~i~~L~~L~~L~l~~c~~ 338 (612)
|++.||++..+|. .+..+..|+.|++.++..
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcc
Confidence 7777777776663 566677777777766543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2e-22 Score=207.08 Aligned_cols=331 Identities=21% Similarity=0.179 Sum_probs=224.6
Q ss_pred ccEEeccCCCCccccc-cccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecC
Q 007219 21 LEQLILEGCTRLHEIH-PSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLD 98 (612)
Q Consensus 21 L~~L~L~~c~~l~~i~-~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~ 98 (612)
-+.|+|+++. +..+. ..+.++++|+.+++.. +.++.+|.... ..+|+.|+|.+|-+...-.+.+..++.|+.|||+
T Consensus 80 t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccc-cccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4569998854 44443 4578999999999998 67889998776 6679999999987665556678888999999999
Q ss_pred CcCCcccccc-cccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCC-
Q 007219 99 GTDIKELPLS-IELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGL- 176 (612)
Q Consensus 99 ~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~l- 176 (612)
.|.|+++|.. +..-.++++|+|.+|.....-...|..+.+|..|.|+.|....--+..|.++++|+.|+|..|.|+..
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 9999988743 55557899999999876655555678888999999999966666667888899999999999999876
Q ss_pred ChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcc-cCcccccc
Q 007219 177 PASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQ-STSWFLHF 255 (612)
Q Consensus 177 p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~ 255 (612)
...+..+++|+.|.|..|....---..+..+.++++|+|+.|+....--.++-.+++|+.|+++.|..... ...|....
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 56788899999999988876554455677899999999999887776677788899999999999874431 22222111
Q ss_pred cceecccCCCCccccCCC--CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcccc----chhhhcccccc
Q 007219 256 PITLIRRNSDPVAWRFPS--LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSL----PASIIHLSKLG 329 (612)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~l----p~~i~~L~~L~ 329 (612)
.........+.. ..+++ +..+..|++|+|+.|.+.. .-...+..+++|++|||.+|.++-. ...+..+++|+
T Consensus 318 kL~~LdLs~N~i-~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 318 KLKELDLSSNRI-TRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cceeEecccccc-ccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 111111111111 11221 4455555555555555421 1112244456666666666655411 12344566666
Q ss_pred ccccccccccccCCCC----CCCccEEeccC
Q 007219 330 KMVLEDCKRLQSLPQP----PPSIVSIRVDG 356 (612)
Q Consensus 330 ~L~l~~c~~L~~lp~l----p~sL~~L~i~~ 356 (612)
+|.+.++ .+++||.- .++|++|++.+
T Consensus 396 kL~l~gN-qlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 396 KLRLTGN-QLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred heeecCc-eeeecchhhhccCcccceecCCC
Confidence 6666553 45555531 34555555543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=5.6e-24 Score=209.84 Aligned_cols=174 Identities=30% Similarity=0.395 Sum_probs=114.2
Q ss_pred CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCccccCCCCC
Q 007219 14 DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECL 92 (612)
Q Consensus 14 ~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L 92 (612)
+++.+-.|+.|+..+ +.+..+|..++++.+|..+++.++ .++.+|+... ++.|+.|+...|- ++.+|..++.|..|
T Consensus 132 ~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESL 208 (565)
T ss_pred hHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhh
Confidence 455555555555443 334455555566666666666653 3334443333 6666666666543 66666667777777
Q ss_pred CeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccc-cCCCCCEEecCCCCCCccchhhhhccccccEEEccCc
Q 007219 93 QELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTIS-ALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGT 171 (612)
Q Consensus 93 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~ 171 (612)
..|++..|.|..+| .|..+..|..|.++.|. ++.+|.... .++.|.+||+..| +++..|+.+.-+++|..||+++|
T Consensus 209 ~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 209 ELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCC
Confidence 77777777777776 46666666666666543 456666554 6777888888777 67778888888888888888888
Q ss_pred CCCCCChhhhccCCCcEEeecCC
Q 007219 172 AIRGLPASIEFLSGLVLLNLKDC 194 (612)
Q Consensus 172 ~i~~lp~~i~~l~~L~~L~L~~c 194 (612)
.|+.+|.+++++ +|+.|-+.+|
T Consensus 286 ~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 286 DISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ccccCCcccccc-eeeehhhcCC
Confidence 888888888888 7888777766
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=6.4e-23 Score=202.42 Aligned_cols=235 Identities=23% Similarity=0.284 Sum_probs=139.8
Q ss_pred CCCCCcCCccCC-CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCc
Q 007219 2 SLKHSENLIRTP-DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLK 80 (612)
Q Consensus 2 ~Ls~~~~L~~~p-~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 80 (612)
++.+. ++++.| +.-.++.|++|+... +.++.+|+.+|.+.+|..|++.. +++..+|...+|..|+.|.+..|. ++
T Consensus 166 ~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~-i~ 241 (565)
T KOG0472|consen 166 DLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQ-IE 241 (565)
T ss_pred hcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccH-HH
Confidence 33433 344444 444477777777654 45667788888888888888887 566677754446667666666654 55
Q ss_pred ccCcccc-CCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCcc-------
Q 007219 81 KFPDIVG-SMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLRE------- 152 (612)
Q Consensus 81 ~~p~~~~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~------- 152 (612)
.+|...+ ++.+|.+|++.+|+++++|..+..+.+|.+||+++|. +..+|.+++++ .|+.|-+.||+.-+.
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 5554443 6777777777777777777777777777777777654 45666667766 666666655521000
Q ss_pred ------------------------------ch----hhhhccccccEEEccCcCCCCCC---------------------
Q 007219 153 ------------------------------FP----EIVESMEQLLELHLEGTAIRGLP--------------------- 177 (612)
Q Consensus 153 ------------------------------~p----~~l~~l~~L~~L~L~~~~i~~lp--------------------- 177 (612)
.+ .....+.+.+.|++++-+++.+|
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch
Confidence 00 01112233444444444444444
Q ss_pred -----hhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 178 -----ASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 178 -----~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
..+..+..+...-+..++....+|..++.+++|..|++++| .+..+|..++.+..|+.|+++.|.
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc
Confidence 44444443333333344445556666677777777777754 456667777777777777776653
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-20 Score=203.40 Aligned_cols=171 Identities=24% Similarity=0.307 Sum_probs=119.5
Q ss_pred ccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEecc
Q 007219 161 EQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDIS 240 (612)
Q Consensus 161 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~ 240 (612)
.+|+.++++.+.+..+|+|++.+.+|+.++..+|.. ..+|..+...++|+.|.+..| .++.+|...+.+++|+.|++.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 467778888888888888888888888888887765 677777777777777777765 356667777778888888887
Q ss_pred CCCCCcccCcccccccc-------------------------e-eccc-CCCCccccCCCCCCCCcccEEeccCCCCCCC
Q 007219 241 GCKGLLQSTSWFLHFPI-------------------------T-LIRR-NSDPVAWRFPSLSGLYCLRKLDISDCNLGEG 293 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-------------------------~-~~~~-~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~ 293 (612)
.|.....+...+..... + .... .+......+|.+.++.+|+.|+|++|++.+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~- 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS- 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-
Confidence 77643222111110000 0 0111 122233456778899999999999999854
Q ss_pred CCCcc-ccCcCCCCEEeccCCCccccchhhhcccccccccccc
Q 007219 294 AIPSD-IGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLED 335 (612)
Q Consensus 294 ~ip~~-l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~ 335 (612)
+|.. +.++..|++|+||||.++.+|..+..++.|+.|....
T Consensus 398 -fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 398 -FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred -CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence 7754 6679999999999999999998887777777776544
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=3e-17 Score=182.85 Aligned_cols=54 Identities=33% Similarity=0.399 Sum_probs=29.9
Q ss_pred cccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhcccccccccccccc
Q 007219 279 CLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCK 337 (612)
Q Consensus 279 ~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~ 337 (612)
+|+.|++++|.+.. +|.. ..+|+.|++++|+++.+|.++.++++|+.|++++|+
T Consensus 403 ~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 403 ELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 45556666665532 4432 234555666666666666666666666666665554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=1.6e-19 Score=195.22 Aligned_cols=218 Identities=25% Similarity=0.318 Sum_probs=161.6
Q ss_pred CCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEee
Q 007219 112 LSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNL 191 (612)
Q Consensus 112 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 191 (612)
..+|+.++++++. +..+|+.++.+.+|+.++..+|.. ..+|..+..+.+|+.|.+..|.+..+|...+.++.|+.|+|
T Consensus 240 p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 3467777777754 566677777777777777777633 66666666667777777777777777776666777777777
Q ss_pred cCCCCCCccccc------------------------c--cCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCC
Q 007219 192 KDCKNLKSLPRT------------------------I--NGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGL 245 (612)
Q Consensus 192 ~~c~~l~~lp~~------------------------i--~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 245 (612)
..|+. ..+|.. . ...+.|+.|.+.+|...+...+.+..+.+|+.|++++|...
T Consensus 318 ~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 66542 222211 0 12355777888888877777777888899999999988633
Q ss_pred cccCcccccccceecccCCCCccccCCC--CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhh
Q 007219 246 LQSTSWFLHFPITLIRRNSDPVAWRFPS--LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASII 323 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~ 323 (612)
. +|. +.++..|+.|+||+|++.. +|..+..+..|++|...+|.+...| .+.
T Consensus 397 ~------------------------fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~ 449 (1081)
T KOG0618|consen 397 S------------------------FPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELA 449 (1081)
T ss_pred c------------------------CCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhh
Confidence 2 344 6788899999999999965 9999999999999999999999999 899
Q ss_pred ccccccccccccccccccC--C-CCC-CCccEEeccCCCCc
Q 007219 324 HLSKLGKMVLEDCKRLQSL--P-QPP-PSIVSIRVDGCTSL 360 (612)
Q Consensus 324 ~L~~L~~L~l~~c~~L~~l--p-~lp-~sL~~L~i~~C~~L 360 (612)
+++.|+.+|++.+ .|+.+ | ..| +.|++|++.|-+.+
T Consensus 450 ~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccc
Confidence 9999999999854 44443 3 357 89999999988753
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=1.1e-16 Score=178.39 Aligned_cols=261 Identities=23% Similarity=0.295 Sum_probs=188.3
Q ss_pred CCCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCc
Q 007219 1 MSLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLK 80 (612)
Q Consensus 1 l~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 80 (612)
|||+++ +|+.+|+ .-.++|+.|++.+| .+..+|. .+++|++|++++| .++.+|.. .++|+.|++.+|. +.
T Consensus 206 LdLs~~-~LtsLP~-~l~~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N~-L~ 275 (788)
T PRK15387 206 LNVGES-GLTTLPD-CLPAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSNP-LT 275 (788)
T ss_pred EEcCCC-CCCcCCc-chhcCCCEEEccCC-cCCCCCC---CCCCCcEEEecCC-ccCcccCc--ccccceeeccCCc-hh
Confidence 467776 6788886 22357899999874 5666764 3578999999884 67778753 5788999998876 56
Q ss_pred ccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcc
Q 007219 81 KFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESM 160 (612)
Q Consensus 81 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l 160 (612)
.+|.. ..+|+.|++++|.++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. .
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p 341 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---P 341 (788)
T ss_pred hhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---c
Confidence 66653 35688899999999988863 4689999999875 4556652 3457788888874 4456642 2
Q ss_pred ccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEecc
Q 007219 161 EQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDIS 240 (612)
Q Consensus 161 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~ 240 (612)
.+|++|++++|.++.+|.. ..+|+.|++.+|.. ..+|.. ..+|+.|++++|... .+|.. .++|+.|+++
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS 410 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVS 410 (788)
T ss_pred cccceEecCCCccCCCCCC---Ccccceehhhcccc-ccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEcc
Confidence 5788999999999988864 35678888888764 456653 357899999988644 46653 3678889998
Q ss_pred CCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-ccc
Q 007219 241 GCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-SLP 319 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp 319 (612)
+|.... +|.+ ..+|+.|++++|++.. +|..+..+++|+.|+|++|.++ ..|
T Consensus 411 ~N~Lss------------------------IP~l--~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 411 GNRLTS------------------------LPML--PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCcCCC------------------------CCcc--hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHH
Confidence 876322 2221 2467889999999864 8999999999999999999988 444
Q ss_pred hhhhc
Q 007219 320 ASIIH 324 (612)
Q Consensus 320 ~~i~~ 324 (612)
..+..
T Consensus 463 ~~L~~ 467 (788)
T PRK15387 463 QALRE 467 (788)
T ss_pred HHHHH
Confidence 44433
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=5.9e-16 Score=173.62 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=29.3
Q ss_pred CccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccC
Q 007219 44 KLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYG 122 (612)
Q Consensus 44 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 122 (612)
.|+.|+|++| .++.+|..+ .++|++|++++|. +..+|..+. .+|+.|+|++|.+.++|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNN-ELKSLPENL-QGNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCC-CCCcCChhh-ccCCCEEECCCCc-cccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 3444444442 333444322 2344444444443 333333221 234444444444444443332 2444444443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=1.3e-15 Score=170.88 Aligned_cols=245 Identities=27% Similarity=0.396 Sum_probs=163.6
Q ss_pred CCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccC
Q 007219 43 KKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYG 122 (612)
Q Consensus 43 ~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 122 (612)
.+...|++++ ..++.+|..+ .++|+.|+|++|. ++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~I-p~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPACI-PEQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCC-CCcCcCCccc-ccCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 3456777776 4566777643 4678888888775 556776443 478888888888888876543 4688888888
Q ss_pred CCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccc
Q 007219 123 CKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPR 202 (612)
Q Consensus 123 ~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 202 (612)
|. +..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++.+|... .+|.
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~ 321 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-ALPE 321 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-cCCc
Confidence 76 346666553 47888888766 4446666543 478888888888887776543 46777888876543 4554
Q ss_pred cccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccE
Q 007219 203 TINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRK 282 (612)
Q Consensus 203 ~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 282 (612)
.+ .++|+.|++++|.. ..+|..+. ++|+.|++++|.... +|. .-.++|+.
T Consensus 322 ~l--~~sL~~L~Ls~N~L-t~LP~~l~--~sL~~L~Ls~N~L~~------------------------LP~-~lp~~L~~ 371 (754)
T PRK15370 322 TL--PPGLKTLEAGENAL-TSLPASLP--PELQVLDVSKNQITV------------------------LPE-TLPPTITT 371 (754)
T ss_pred cc--cccceeccccCCcc-ccCChhhc--CcccEEECCCCCCCc------------------------CCh-hhcCCcCE
Confidence 43 26788888888754 34665553 678888888775321 111 00246888
Q ss_pred EeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhc----ccccccccccccc
Q 007219 283 LDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIH----LSKLGKMVLEDCK 337 (612)
Q Consensus 283 L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~----L~~L~~L~l~~c~ 337 (612)
|+|++|.+.. +|..+. .+|+.|++++|++..+|.++.. ++.+..|++.+++
T Consensus 372 LdLs~N~Lt~--LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 372 LDVSRNALTN--LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred EECCCCcCCC--CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 8888888753 666543 3678888888888877765544 3667777777765
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=8.6e-17 Score=142.01 Aligned_cols=172 Identities=29% Similarity=0.398 Sum_probs=149.0
Q ss_pred CCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccc
Q 007219 55 SLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTIS 134 (612)
Q Consensus 55 ~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~ 134 (612)
....+|..+.+.+...|.|++|. +..+|..+..+.+|+.|++.+|+|+++|.++..+++|+.|+++-|. +..+|.+|+
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccC
Confidence 34456666668889999999976 7778888999999999999999999999999999999999998754 678999999
Q ss_pred cCCCCCEEecCCCCCCc-cchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEE
Q 007219 135 ALKYLSTLNLSGLWKLR-EFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTL 213 (612)
Q Consensus 135 ~l~~L~~L~L~~~~~l~-~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 213 (612)
.++.|+.|++.++..-+ .+|..|..|..|+.|.+++|.+.-+|..++.+++|+.|.+++|. +-++|..++.++.|++|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLREL 178 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHH
Confidence 99999999999886554 58999999999999999999999999999999999999999986 45689999999999999
Q ss_pred EecCCCCCcccccccCC
Q 007219 214 HLSGCSKLKNVPENLGK 230 (612)
Q Consensus 214 ~Ls~c~~l~~lp~~l~~ 230 (612)
.+.||. +..+|..++.
T Consensus 179 hiqgnr-l~vlppel~~ 194 (264)
T KOG0617|consen 179 HIQGNR-LTVLPPELAN 194 (264)
T ss_pred hcccce-eeecChhhhh
Confidence 999975 4555654443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=2.6e-16 Score=138.99 Aligned_cols=169 Identities=26% Similarity=0.406 Sum_probs=130.0
Q ss_pred CccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCcccc
Q 007219 9 LIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVG 87 (612)
Q Consensus 9 L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~ 87 (612)
..++|.+-.+.+...|.|+. +.+..+|+.|+.+.+|++|++.+ +.++.+|..+. ++.|+.|++..|. +..+|..++
T Consensus 23 f~~~~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred Hhhcccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhh-hhcCccccC
Confidence 44566667777888888887 55677888888888888888887 67888888777 8888888888765 777888888
Q ss_pred CCCCCCeeecCCcCCc--ccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccE
Q 007219 88 SMECLQELHLDGTDIK--ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLE 165 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~ 165 (612)
.++.|+.|+|.+|++. .+|..+..+..|+.|.++.|. ++.+|..++++++|+.|.+..+ .+-.+|..++.+..|++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHH
Confidence 8888888888888877 577777777788888887754 5777777777777777777776 34456777777777777
Q ss_pred EEccCcCCCCCChhhhc
Q 007219 166 LHLEGTAIRGLPASIEF 182 (612)
Q Consensus 166 L~L~~~~i~~lp~~i~~ 182 (612)
|++.+|.++-+|+.++.
T Consensus 178 lhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 178 LHIQGNRLTVLPPELAN 194 (264)
T ss_pred HhcccceeeecChhhhh
Confidence 77777777777666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=2e-15 Score=155.99 Aligned_cols=159 Identities=23% Similarity=0.230 Sum_probs=78.2
Q ss_pred ccccEEEccCcCCCC-----CChhhhccCCCcEEeecCCCCCC----cccccccCCCCCCEEEecCCCCCc----ccccc
Q 007219 161 EQLLELHLEGTAIRG-----LPASIEFLSGLVLLNLKDCKNLK----SLPRTINGLRSLKTLHLSGCSKLK----NVPEN 227 (612)
Q Consensus 161 ~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~ 227 (612)
++|++|++++|.+.. ++..+..+++|+.|++++|.... .++..+..+++|+.|++++|...+ .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 455555555555441 23333444455555555554331 122233344566666666654432 12333
Q ss_pred cCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCC---CCCccccCcCC
Q 007219 228 LGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEG---AIPSDIGHLCS 304 (612)
Q Consensus 228 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~---~ip~~l~~l~s 304 (612)
+..+++|+.|++++|.......... ...+ ....+.|+.|++++|.+++. .+...+..+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l---------------~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAAL---------------ASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHH---------------HHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 4455666666666654211000000 0000 01235678888888776421 22334455677
Q ss_pred CCEEeccCCCcccc-----chhhhcc-ccccccccccc
Q 007219 305 LKELYLSRNSFVSL-----PASIIHL-SKLGKMVLEDC 336 (612)
Q Consensus 305 L~~L~Ls~n~l~~l-----p~~i~~L-~~L~~L~l~~c 336 (612)
|+++++++|.+..- ...+... +.|++|++.+.
T Consensus 280 L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 280 LLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 88888888877632 2333444 56777776654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=4.1e-15 Score=153.58 Aligned_cols=233 Identities=24% Similarity=0.239 Sum_probs=139.6
Q ss_pred ccCCCCCCeeecCCcCCc-----ccccccccCCCCcEEeccCCCCC------cccccccccCCCCCEEecCCCCCCccch
Q 007219 86 VGSMECLQELHLDGTDIK-----ELPLSIELLSGLVRLTLYGCKNF------ERIPSTISALKYLSTLNLSGLWKLREFP 154 (612)
Q Consensus 86 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l------~~lp~~l~~l~~L~~L~L~~~~~l~~~p 154 (612)
+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+..+++|+.|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344445555666555552 34444555555666666554332 2233445667788888888876655555
Q ss_pred hhhhcccc---ccEEEccCcCCCC-----CChhhhcc-CCCcEEeecCCCCCC----cccccccCCCCCCEEEecCCCCC
Q 007219 155 EIVESMEQ---LLELHLEGTAIRG-----LPASIEFL-SGLVLLNLKDCKNLK----SLPRTINGLRSLKTLHLSGCSKL 221 (612)
Q Consensus 155 ~~l~~l~~---L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l 221 (612)
..+..+.+ |++|+++++.+.. +...+..+ ++|+.|++++|.... .++..+..++.|++|++++|...
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 55555555 8888888887763 33455666 888888888887652 34445666778888888887765
Q ss_pred c----ccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCC-CCCCCCcccEEeccCCCCCCCCCC
Q 007219 222 K----NVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFP-SLSGLYCLRKLDISDCNLGEGAIP 296 (612)
Q Consensus 222 ~----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~~~ip 296 (612)
+ .++..+..+++|+.|++++|........ .+. .+..+++|+.|++++|.+.+..+.
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-------------------~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS-------------------ALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHH-------------------HHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 3 2334455567888888887753210000 011 144567788888888776531111
Q ss_pred ccccC----cCCCCEEeccCCCcc-----ccchhhhcccccccccccccc
Q 007219 297 SDIGH----LCSLKELYLSRNSFV-----SLPASIIHLSKLGKMVLEDCK 337 (612)
Q Consensus 297 ~~l~~----l~sL~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~l~~c~ 337 (612)
..... .+.|++|++++|.++ .+...+..+++|+++++++|.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 11111 367888888887764 344455556677777776653
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=2.3e-15 Score=149.26 Aligned_cols=236 Identities=21% Similarity=0.193 Sum_probs=165.5
Q ss_pred CCccCC--CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccC
Q 007219 8 NLIRTP--DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFP 83 (612)
Q Consensus 8 ~L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p 83 (612)
.++.+| .|+.+++|++|+|+++..-..-|..+..++.|..|-+.++++++.+|...+ +.+|+.|.+..|...-...
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 456666 377788888888887544333455777777777777777778888887766 7778888777766444455
Q ss_pred ccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCC------------CcccccccccCCCCC----------
Q 007219 84 DIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKN------------FERIPSTISALKYLS---------- 140 (612)
Q Consensus 84 ~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~------------l~~lp~~l~~l~~L~---------- 140 (612)
+.+..+++|..|.+.+|.++.++. ++..+..++.+.+..+.. ....|..++.+....
T Consensus 158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~ 237 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN 237 (498)
T ss_pred HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc
Confidence 667888888899999999888887 688888888888776652 112222222111111
Q ss_pred ------------EE---ecCCCCCCccch-hhhhccccccEEEccCcCCCCC-ChhhhccCCCcEEeecCCCCCCccccc
Q 007219 141 ------------TL---NLSGLWKLREFP-EIVESMEQLLELHLEGTAIRGL-PASIEFLSGLVLLNLKDCKNLKSLPRT 203 (612)
Q Consensus 141 ------------~L---~L~~~~~l~~~p-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~ 203 (612)
.+ -.+.|......| .-|..+++|++|++++|.|+.+ +.++..+..++.|.|..|+.-..-...
T Consensus 238 q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~ 317 (498)
T KOG4237|consen 238 QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGM 317 (498)
T ss_pred ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHh
Confidence 01 111222222223 3477889999999999999987 457888889999999888765544556
Q ss_pred ccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 204 INGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 204 i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
+.++..|++|++.+|.+....|..+..+.+|..|.+-+|+
T Consensus 318 f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 7788999999999999888888888888999999887654
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.47 E-value=4.4e-14 Score=160.98 Aligned_cols=323 Identities=24% Similarity=0.294 Sum_probs=197.9
Q ss_pred CCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCC-CccCCCccC--CCCccEEEccCCcCCcccCc
Q 007219 8 NLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTS-LRALPAKIF--MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 8 ~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~-l~~lp~~~~--l~~L~~L~L~~c~~l~~~p~ 84 (612)
.+..+|........++..+-++ ....++.+.. .++|++|-+.++.. +..++..++ ++.|++|+|++|....++|+
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~-~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNN-KIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred CccccccccchhheeEEEEecc-chhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 3455666666667788877653 3334444333 34799998888653 667777544 99999999999999999999
Q ss_pred cccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCC--CCccchhhhhcccc
Q 007219 85 IVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLW--KLREFPEIVESMEQ 162 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~--~l~~~p~~l~~l~~ 162 (612)
.++++-+|++|++++|.|+.+|.++++|..|.+|++..+..+...|.....+.+|++|.+.... .....-..+.++.+
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 9999999999999999999999999999999999999998888887777779999999987653 11112233445555
Q ss_pred ccEEEccCcCCCCCChhhhccCCCc----EEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCC------CC
Q 007219 163 LLELHLEGTAIRGLPASIEFLSGLV----LLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGK------VE 232 (612)
Q Consensus 163 L~~L~L~~~~i~~lp~~i~~l~~L~----~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~------l~ 232 (612)
|+.+....... .+-..+...++|. .+.+.+ ......+..+..+.+|+.|.+.+|...+........ ++
T Consensus 670 L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 670 LENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred hhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 55555433332 1111111222222 222222 233445556667777777777777665433222111 22
Q ss_pred CCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccC
Q 007219 233 SLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSR 312 (612)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~ 312 (612)
++..+.+.+|...... ...--.++|+.|.+..|+..++.+| ....+..++.+.+..
T Consensus 748 ~l~~~~~~~~~~~r~l-----------------------~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~~i~~f 803 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDL-----------------------TWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKELILPF 803 (889)
T ss_pred HHHHHHhhcccccccc-----------------------chhhccCcccEEEEecccccccCCC-HHHHhhhcccEEecc
Confidence 3333333333322200 0012346888888888887654444 333444455444444
Q ss_pred CCccccchhhhccccccccccccccccccCCCCCCCccEEeccCCCCcceecCcc
Q 007219 313 NSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQPPPSIVSIRVDGCTSLETISCVL 367 (612)
Q Consensus 313 n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~~~~ 367 (612)
+.+..++ ...++.+.+.+..+|-..+.++.+.+..||++..++...
T Consensus 804 ~~~~~l~---------~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 804 NKLEGLR---------MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred cccccce---------eeecCCCCceeEecccCccchhheehhcCcccccCcccc
Confidence 4333221 122233333333344333457888888888888877444
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-13 Score=137.20 Aligned_cols=269 Identities=22% Similarity=0.241 Sum_probs=159.6
Q ss_pred CCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccc-ccccccCCCCcEEeccCCCCCcccccc
Q 007219 54 TSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKEL-PLSIELLSGLVRLTLYGCKNFERIPST 132 (612)
Q Consensus 54 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~ 132 (612)
+.++.+|..+ .+.-..+.|..|.+...-|.+|+.+++|+.|+|+.|+|+.| |..|..+.+|..|-+-++..+..+|..
T Consensus 56 ~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 56 KGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 4555666543 34555667776653333335677777777777777777766 556777777777777776666666654
Q ss_pred -cccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCCh-hhhccCCCcEEeecCCCCCC------------
Q 007219 133 -ISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPA-SIEFLSGLVLLNLKDCKNLK------------ 198 (612)
Q Consensus 133 -l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~------------ 198 (612)
|.+|..|+.|.+.-|...-...+.+..+++|..|.+.+|.+..++. ++..+..++.+.+..+....
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 6677777777777665555566777777777777777777777766 56667777777666654221
Q ss_pred cccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCC--CCC
Q 007219 199 SLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS--LSG 276 (612)
Q Consensus 199 ~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~ 276 (612)
..|...+.........+.+...-..-+..+ ..+++.+ +.... .........|. +..
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf--~c~~esl------------------~s~~~--~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKF--LCSLESL------------------PSRLS--SEDFPDSICPAKCFKK 272 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhh--hhhHHhH------------------HHhhc--cccCcCCcChHHHHhh
Confidence 111111111111111111110000000000 0001100 00000 00111122333 788
Q ss_pred CCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccch-hhhccccccccccccccccccCCCCC
Q 007219 277 LYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPA-SIIHLSKLGKMVLEDCKRLQSLPQPP 346 (612)
Q Consensus 277 l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~L~~L~~L~l~~c~~L~~lp~lp 346 (612)
+++|+.|+|++|.++ +.-+.++..+..+++|.|.+|++..+.+ .+.+++.|+.|++.++..-.--|...
T Consensus 273 L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred cccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 999999999999985 4445678889999999999999887664 46789999999999986655555443
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=6.8e-11 Score=135.16 Aligned_cols=247 Identities=28% Similarity=0.392 Sum_probs=169.2
Q ss_pred CCCCeeecCCcCCcccccccccCCCCcEEeccCCCC-Ccccccc-cccCCCCCEEecCCCCCCccchhhhhccccccEEE
Q 007219 90 ECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKN-FERIPST-ISALKYLSTLNLSGLWKLREFPEIVESMEQLLELH 167 (612)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~-l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~ 167 (612)
...+...+-++.+..++....+. +|++|-+.++.. +..++.. |..++.|+.||+++|..+..+|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 45677777777777776655443 788888887763 4444444 67799999999999999999999999999999999
Q ss_pred ccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCC--CCcccccccCCCCCCcEEeccCCCCC
Q 007219 168 LEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCS--KLKNVPENLGKVESLEVLDISGCKGL 245 (612)
Q Consensus 168 L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~--~l~~lp~~l~~l~~L~~L~l~~~~~~ 245 (612)
++++.+..+|.+++++..|.+|++..+..+..+|..+..+++|+.|.+.... .....-..+..+++|+.+.+......
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~ 681 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL 681 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH
Confidence 9999999999999999999999999999888888888889999999997654 11222334455666666666433320
Q ss_pred cccCcccccccceecccCCCCccccCCCCCCCCc----ccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccch-
Q 007219 246 LQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYC----LRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPA- 320 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~----L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~- 320 (612)
. . ..+..+.. .+.+.+.++.. ...+..++.+.+|+.|.+.++.+.....
T Consensus 682 ~-~-----------------------e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 682 L-L-----------------------EDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred h-H-----------------------hhhhhhHHHHHHhHhhhhccccc--ceeecccccccCcceEEEEcCCCchhhcc
Confidence 0 0 00011111 11222222222 2244455566666666666665542211
Q ss_pred ----h-hh-ccccccccccccccccccCC--CCCCCccEEeccCCCCccee
Q 007219 321 ----S-II-HLSKLGKMVLEDCKRLQSLP--QPPPSIVSIRVDGCTSLETI 363 (612)
Q Consensus 321 ----~-i~-~L~~L~~L~l~~c~~L~~lp--~lp~sL~~L~i~~C~~L~~l 363 (612)
. .. .++++..+.+.+|..++.+- ..|++|+.|.+..|+.++.+
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 0 11 24567777888888877765 35899999999999988875
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.5e-11 Score=127.75 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=111.3
Q ss_pred CCCccCCCccC---CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccc
Q 007219 54 TSLRALPAKIF---MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIP 130 (612)
Q Consensus 54 ~~l~~lp~~~~---l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 130 (612)
..++.+|..-. +.--...+|+.|. +..+|+.+..+..|+.+.|..|.|..+|..+.++..|+.|+|+.|. +..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCC
Confidence 44455554322 2333344555543 4445555555555555555555555555555555555555555433 23344
Q ss_pred cccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCC
Q 007219 131 STISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSL 210 (612)
Q Consensus 131 ~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L 210 (612)
..++.++ |+.|-+++|.++.+|..++.+..|..|+.+.|. +..+|..++.+.+|
T Consensus 138 ~~lC~lp-------------------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~sl 191 (722)
T KOG0532|consen 138 DGLCDLP-------------------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSL 191 (722)
T ss_pred hhhhcCc-------------------------ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHH
Confidence 4444333 444444555555555555544555555554442 23344444444444
Q ss_pred CEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCC
Q 007219 211 KTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNL 290 (612)
Q Consensus 211 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l 290 (612)
+.|.++.|. +..+|+.+ . .-.|..||++.|++
T Consensus 192 r~l~vrRn~-l~~lp~El----------------------------------------------~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 192 RDLNVRRNH-LEDLPEEL----------------------------------------------C-SLPLIRLDFSCNKI 223 (722)
T ss_pred HHHHHhhhh-hhhCCHHH----------------------------------------------h-CCceeeeecccCce
Confidence 444444432 22222221 1 11377788888888
Q ss_pred CCCCCCccccCcCCCCEEeccCCCccccchhhh---cccccccccccccc
Q 007219 291 GEGAIPSDIGHLCSLKELYLSRNSFVSLPASII---HLSKLGKMVLEDCK 337 (612)
Q Consensus 291 ~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~---~L~~L~~L~l~~c~ 337 (612)
+. +|.++..++.|++|.|.+|.+.+=|..|. ...-.++|++.-|.
T Consensus 224 s~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 224 SY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 54 88888888999999998888888887663 33445777777773
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=2.3e-11 Score=126.27 Aligned_cols=187 Identities=25% Similarity=0.404 Sum_probs=157.0
Q ss_pred CCCCCcCCccCC-CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCc
Q 007219 2 SLKHSENLIRTP-DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLK 80 (612)
Q Consensus 2 ~Ls~~~~L~~~p-~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 80 (612)
||+..+ +.++| ++..+-.|+.+.|.. +-+..+|..+.++..|++|+|+. +.+..+|..++.--|+.|.+++|. ++
T Consensus 81 DlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sNNk-l~ 156 (722)
T KOG0532|consen 81 DLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSNNK-LT 156 (722)
T ss_pred hccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEecCc-cc
Confidence 566665 45566 566677788888876 44567899999999999999998 678899999986779999999865 88
Q ss_pred ccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcc
Q 007219 81 KFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESM 160 (612)
Q Consensus 81 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l 160 (612)
.+|+.++....|..|+.+.|.+..+|+.++.+.+|+.|+++.|. +..+|..++.|+ |..||++.| ++..+|..|.+|
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScN-kis~iPv~fr~m 233 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCN-KISYLPVDFRKM 233 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccC-ceeecchhhhhh
Confidence 99999999999999999999999999999999999999999965 567787787554 889999866 788899999999
Q ss_pred ccccEEEccCcCCCCCChhh---hccCCCcEEeecCCC
Q 007219 161 EQLLELHLEGTAIRGLPASI---EFLSGLVLLNLKDCK 195 (612)
Q Consensus 161 ~~L~~L~L~~~~i~~lp~~i---~~l~~L~~L~L~~c~ 195 (612)
+.|++|.|.+|.++..|..| |...--++|+..-|.
T Consensus 234 ~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99999999999999988876 445556777777774
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=3.1e-09 Score=113.32 Aligned_cols=193 Identities=33% Similarity=0.472 Sum_probs=125.5
Q ss_pred EEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCC-CCcEEeccCCCCCcccccccccCCCCCEEecCCCC
Q 007219 70 TLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLS-GLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLW 148 (612)
Q Consensus 70 ~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 148 (612)
.|.+..+..... ...+...+.++.|++.++.+.++|.....+. +|+.|+++++. +..+|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-
Confidence 455555442122 2223444667777777777777777766664 77777777754 4555555677777777777777
Q ss_pred CCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCccccccc
Q 007219 149 KLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENL 228 (612)
Q Consensus 149 ~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 228 (612)
.+..+|......++|+.|++++|.+..+|..+..+..|+.|.+.++. ....+..+.+++++..|.+.++. ...++..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~ 251 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce-eeeccchh
Confidence 45556655557777777888888888877777677777777777765 33344456667777777755543 33335666
Q ss_pred CCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCC
Q 007219 229 GKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLG 291 (612)
Q Consensus 229 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 291 (612)
+.+++|+.|++++|.... ++.++.+.+++.|+++++.+.
T Consensus 252 ~~l~~l~~L~~s~n~i~~------------------------i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 252 GNLSNLETLDLSNNQISS------------------------ISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccceeccccccccc------------------------cccccccCccCEEeccCcccc
Confidence 777778888877776432 223556677888888877764
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=8.4e-10 Score=117.63 Aligned_cols=198 Identities=28% Similarity=0.353 Sum_probs=159.2
Q ss_pred EEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CC-CccEEEccCCcCCcccCccccCCCCCCeeecCCc
Q 007219 23 QLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MK-SLETLVLSGCLKLKKFPDIVGSMECLQELHLDGT 100 (612)
Q Consensus 23 ~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~-~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~ 100 (612)
.|.+..+... .-...+..++.+..|++.+ ..+..+|.... +. +|+.|+++++. +..+|..++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCC-cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 4565553321 2234456668899999988 67778888777 43 89999999976 7777777899999999999999
Q ss_pred CCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhh
Q 007219 101 DIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASI 180 (612)
Q Consensus 101 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i 180 (612)
.+.++|...+.+..|+.|+++++. +..+|..+..+..|++|.++++. ....+..+.++.++..+.+.++.+..++..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchh
Confidence 999999888889999999999976 57777766666779999999885 4556677888899999999999999989999
Q ss_pred hccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccc
Q 007219 181 EFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPEN 227 (612)
Q Consensus 181 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 227 (612)
+.++.|+.|++++|..... +. ++.+.+|+.|+++++......+..
T Consensus 252 ~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 252 GNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 9999999999999875543 33 889999999999998877766654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-10 Score=116.30 Aligned_cols=136 Identities=20% Similarity=0.149 Sum_probs=65.0
Q ss_pred ccCCCccEEecCCCCCCccCCC--ccC-CCCccEEEccCCcCCcc--cCccccCCCCCCeeecCCcCCcccccc--cccC
Q 007219 40 LVHKKLIFLNLKGCTSLRALPA--KIF-MKSLETLVLSGCLKLKK--FPDIVGSMECLQELHLDGTDIKELPLS--IELL 112 (612)
Q Consensus 40 ~~l~~L~~L~L~~c~~l~~lp~--~~~-l~~L~~L~L~~c~~l~~--~p~~~~~l~~L~~L~L~~~~i~~lp~~--i~~l 112 (612)
.++++|+.+.|.++. ....+. ... |++++.|+|++|-...- +..+...+++|+.|+|+.|.+....++ -..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 466777777777642 323331 222 77777777777643222 223455677777777777666533322 1234
Q ss_pred CCCcEEeccCCCCCc-ccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCC
Q 007219 113 SGLVRLTLYGCKNFE-RIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGL 176 (612)
Q Consensus 113 ~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~l 176 (612)
..|+.|.|+.|.... .+-..+..+|+|+.|++.+|..+.........+..|++|+|++|.+..+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence 455555555554321 1112223344555555554432222222222333444444444444433
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.5e-10 Score=113.55 Aligned_cols=182 Identities=20% Similarity=0.163 Sum_probs=116.8
Q ss_pred cccCCCCCEEecCCCCCCc--cchhhhhccccccEEEccCcCCCCCChh--hhccCCCcEEeecCCCCCC-cccccccCC
Q 007219 133 ISALKYLSTLNLSGLWKLR--EFPEIVESMEQLLELHLEGTAIRGLPAS--IEFLSGLVLLNLKDCKNLK-SLPRTINGL 207 (612)
Q Consensus 133 l~~l~~L~~L~L~~~~~l~--~~p~~l~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~c~~l~-~lp~~i~~l 207 (612)
...+++++.|+|++|-... .+......+++|+.|+++.|.+...-++ -..++.|+.|.|+.|.... .+-..+-.+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 3456666666666653222 2334566777777777777766643322 1356778888888887652 233334467
Q ss_pred CCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccC
Q 007219 208 RSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISD 287 (612)
Q Consensus 208 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 287 (612)
|+|+.|.+.+|...........-++.|+.|+|++|..... ..++..+.++.|+.|+++.
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~---------------------~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF---------------------DQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc---------------------ccccccccccchhhhhccc
Confidence 8888888888754433333344467788888887764331 1233467788888888888
Q ss_pred CCCCCCCCCcc-----ccCcCCCCEEeccCCCccccch--hhhcccccccccccc
Q 007219 288 CNLGEGAIPSD-----IGHLCSLKELYLSRNSFVSLPA--SIIHLSKLGKMVLED 335 (612)
Q Consensus 288 ~~l~~~~ip~~-----l~~l~sL~~L~Ls~n~l~~lp~--~i~~L~~L~~L~l~~ 335 (612)
|.+.+-.+|+. ...+++|++|++..|++...++ .+..+.+|+.|.+..
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 88877666665 4568889999999998875552 455566666666543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=3.8e-10 Score=108.64 Aligned_cols=134 Identities=26% Similarity=0.291 Sum_probs=89.5
Q ss_pred cccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEec
Q 007219 160 MEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDI 239 (612)
Q Consensus 160 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l 239 (612)
...|++|++++|.|+.+..++.-++.++.|+++.|.....- .+..+++|+.|++++|. +..+-.+-.++.|.+.|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 35688888888888888888888888888888887655432 25677888888888764 3333344445667777777
Q ss_pred cCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccc
Q 007219 240 SGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLP 319 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp 319 (612)
++|.... +..+..+.+|..||+++|++..-.--..+++++.|+.|.|.+|.+..+|
T Consensus 360 a~N~iE~------------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIET------------------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhh------------------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7665221 2224556677777777777644333456677777777777777766555
Q ss_pred h
Q 007219 320 A 320 (612)
Q Consensus 320 ~ 320 (612)
.
T Consensus 416 d 416 (490)
T KOG1259|consen 416 D 416 (490)
T ss_pred h
Confidence 3
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.68 E-value=1.5e-09 Score=107.04 Aligned_cols=215 Identities=22% Similarity=0.223 Sum_probs=125.8
Q ss_pred CCCCCCccEEeccCCCCccc----cccccccCCCccEEecCCC---CCCccCCCccCCCCccEEEccCCcCCcccCcccc
Q 007219 15 FSRVPNLEQLILEGCTRLHE----IHPSLLVHKKLIFLNLKGC---TSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVG 87 (612)
Q Consensus 15 l~~l~~L~~L~L~~c~~l~~----i~~si~~l~~L~~L~L~~c---~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~ 87 (612)
+..+..+.+|+|+|++.-.+ +-..+.+.+.|+..++++- +....+|.... .+-..+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~----------------~l~~aL~ 89 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK----------------MLSKALL 89 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH----------------HHHHHHh
Confidence 44566788888888776543 3344556677777777752 11112222110 0111122
Q ss_pred CCCCCCeeecCCcCCc-----ccccccccCCCCcEEeccCCCCCccc-------------ccccccCCCCCEEecCCCCC
Q 007219 88 SMECLQELHLDGTDIK-----ELPLSIELLSGLVRLTLYGCKNFERI-------------PSTISALKYLSTLNLSGLWK 149 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~l-------------p~~l~~l~~L~~L~L~~~~~ 149 (612)
.+++|++|+|++|.+. .+-.-+..+..|++|.|.+|.....- ..-..+-+.|+++....|..
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3334444444444443 11122344555555555555432111 11234456788888877743
Q ss_pred Cc----cchhhhhccccccEEEccCcCCCC-----CChhhhccCCCcEEeecCCCCCC----cccccccCCCCCCEEEec
Q 007219 150 LR----EFPEIVESMEQLLELHLEGTAIRG-----LPASIEFLSGLVLLNLKDCKNLK----SLPRTINGLRSLKTLHLS 216 (612)
Q Consensus 150 l~----~~p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls 216 (612)
-. .+...+...+.|+++.+..|.|.. +-..+.++++|++|||++|.... .+...++.++.|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 22 244667778889999998888764 34567889999999999987754 345566778889999998
Q ss_pred CCCCCccccccc-----CCCCCCcEEeccCCCCC
Q 007219 217 GCSKLKNVPENL-----GKVESLEVLDISGCKGL 245 (612)
Q Consensus 217 ~c~~l~~lp~~l-----~~l~~L~~L~l~~~~~~ 245 (612)
+|..-..-...+ ...++|+.|.+.+|...
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 887654432221 33677888888777643
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=3.9e-08 Score=90.95 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=5.2
Q ss_pred hccccccEEEccCcCCC
Q 007219 158 ESMEQLLELHLEGTAIR 174 (612)
Q Consensus 158 ~~l~~L~~L~L~~~~i~ 174 (612)
..+++|+.|++.+|.+.
T Consensus 110 ~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GG-TT--EEE-TT-GGG
T ss_pred HcCCCcceeeccCCccc
Confidence 33444444444444444
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=4.9e-09 Score=103.47 Aligned_cols=238 Identities=23% Similarity=0.230 Sum_probs=137.5
Q ss_pred CCCccEEEccCCcCCc----ccCccccCCCCCCeeecCCc----CCcccccccccCCCCcEEeccCCCCCcccccccccC
Q 007219 65 MKSLETLVLSGCLKLK----KFPDIVGSMECLQELHLDGT----DIKELPLSIELLSGLVRLTLYGCKNFERIPSTISAL 136 (612)
Q Consensus 65 l~~L~~L~L~~c~~l~----~~p~~~~~l~~L~~L~L~~~----~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l 136 (612)
+.++..|+|+||+.-. .+...+.+.++|+..++++- ...++|..+ ..+..++...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L-----------------~~l~~aL~~~ 91 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL-----------------KMLSKALLGC 91 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH-----------------HHHHHHHhcC
Confidence 5677777777776432 23344555666777766642 122444332 1112223333
Q ss_pred CCCCEEecCCCCCCccch----hhhhccccccEEEccCcCCCCCC--------------hhhhccCCCcEEeecCCCCCC
Q 007219 137 KYLSTLNLSGLWKLREFP----EIVESMEQLLELHLEGTAIRGLP--------------ASIEFLSGLVLLNLKDCKNLK 198 (612)
Q Consensus 137 ~~L~~L~L~~~~~l~~~p----~~l~~l~~L~~L~L~~~~i~~lp--------------~~i~~l~~L~~L~L~~c~~l~ 198 (612)
+.|++|+||.|-.-...+ +.+.++..|++|.|.+|.+.... .-+++-+.|+++...+|+.-.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 455555555554333322 23344555666666655554211 123445667777777665432
Q ss_pred ----cccccccCCCCCCEEEecCCCCCcc----cccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCcccc
Q 007219 199 ----SLPRTINGLRSLKTLHLSGCSKLKN----VPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWR 270 (612)
Q Consensus 199 ----~lp~~i~~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (612)
.+...+...+.|+.+.+..|.+... +...+..+++|+.|++..|.-..... ..
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs-------------------~~ 232 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-------------------VA 232 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH-------------------HH
Confidence 2233445567788888877765432 34556788899999988876322110 01
Q ss_pred CC-CCCCCCcccEEeccCCCCCCCCCC---ccc-cCcCCCCEEeccCCCcc-----ccchhhhccccccccccccccc
Q 007219 271 FP-SLSGLYCLRKLDISDCNLGEGAIP---SDI-GHLCSLKELYLSRNSFV-----SLPASIIHLSKLGKMVLEDCKR 338 (612)
Q Consensus 271 l~-~l~~l~~L~~L~Ls~~~l~~~~ip---~~l-~~l~sL~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~l~~c~~ 338 (612)
+. .++.+++|+.|++++|.+.+...- ..+ ...++|+.|.+.+|.++ .+-..+...+.|+.|+|++|+.
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11 156678999999999988653321 112 34789999999999887 3445667788888888888754
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=1e-08 Score=98.93 Aligned_cols=102 Identities=28% Similarity=0.322 Sum_probs=60.0
Q ss_pred CCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEcc
Q 007219 90 ECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLE 169 (612)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~ 169 (612)
..|++|+|++|.|+.+..++.-+++++.|++++|.... +. .+..+++|+.||+++| .+..+...-..+-+++.|.++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehh
Confidence 35777777777777777777777777777777765432 21 2556666666666665 233333333345556666666
Q ss_pred CcCCCCCChhhhccCCCcEEeecCCC
Q 007219 170 GTAIRGLPASIEFLSGLVLLNLKDCK 195 (612)
Q Consensus 170 ~~~i~~lp~~i~~l~~L~~L~L~~c~ 195 (612)
+|.|..+ +.++.+-+|..|++++|+
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccc
Confidence 6665554 334445555555555543
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=3e-07 Score=95.25 Aligned_cols=73 Identities=27% Similarity=0.557 Sum_probs=49.8
Q ss_pred hhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcE
Q 007219 157 VESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEV 236 (612)
Q Consensus 157 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 236 (612)
+..+.+++.|+++++.++.+|. ...+|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 3445777777777777777772 34468888888888877777655 35788888888766666654 3555
Q ss_pred Eecc
Q 007219 237 LDIS 240 (612)
Q Consensus 237 L~l~ 240 (612)
|++.
T Consensus 117 L~L~ 120 (426)
T PRK15386 117 LEIK 120 (426)
T ss_pred EEeC
Confidence 5554
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=5.3e-08 Score=90.08 Aligned_cols=133 Identities=23% Similarity=0.245 Sum_probs=34.5
Q ss_pred ccCCCCCCCCCccEEeccCCCCccccccccc-cCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccc-c
Q 007219 10 IRTPDFSRVPNLEQLILEGCTRLHEIHPSLL-VHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIV-G 87 (612)
Q Consensus 10 ~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~-~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~-~ 87 (612)
.++|.+.....+++|+|.|+. +..| +.++ .+.+|+.|++++ +.++.++....++.|++|++++|. +..+.+.+ .
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~ 85 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccccccccccc-cccc-cchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCC-CCccccchHH
Confidence 345555555556666666632 2223 2333 355666666665 334444432235555555555554 33333222 2
Q ss_pred CCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCcc---chhhhhcccccc
Q 007219 88 SMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLRE---FPEIVESMEQLL 164 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~---~p~~l~~l~~L~ 164 (612)
.+++|++|++++|.|..+.. + ..+..+++|+.|++.+|+.... -...+..+|+|+
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~---------------------l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNE---------------------L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp H-TT--EEE-TTS---SCCC---------------------C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred hCCcCCEEECcCCcCCChHH---------------------h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 35555555555555543321 1 1244556666666666544322 224566677777
Q ss_pred EEEc
Q 007219 165 ELHL 168 (612)
Q Consensus 165 ~L~L 168 (612)
.||-
T Consensus 144 ~LD~ 147 (175)
T PF14580_consen 144 VLDG 147 (175)
T ss_dssp EETT
T ss_pred eeCC
Confidence 7764
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=3.2e-09 Score=106.93 Aligned_cols=138 Identities=22% Similarity=0.306 Sum_probs=68.3
Q ss_pred cCCCcEEeecCCCCCCccc--ccccCCCCCCEEEecCCCCCcccc--cccCCCCCCcEEeccCCCCCcccCcccccccce
Q 007219 183 LSGLVLLNLKDCKNLKSLP--RTINGLRSLKTLHLSGCSKLKNVP--ENLGKVESLEVLDISGCKGLLQSTSWFLHFPIT 258 (612)
Q Consensus 183 l~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (612)
+..|+.|+.++|......+ .-..+..+|+.|.+++|+.++..- ..-.+.+.|+.+++.+|......
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~---------- 362 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG---------- 362 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh----------
Confidence 4555666666655543222 122345666666666665544321 11133456666666665432211
Q ss_pred ecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCC----CCccccCcCCCCEEeccCCCcc--ccchhhhcccccccc
Q 007219 259 LIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGA----IPSDIGHLCSLKELYLSRNSFV--SLPASIIHLSKLGKM 331 (612)
Q Consensus 259 ~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~----ip~~l~~l~sL~~L~Ls~n~l~--~lp~~i~~L~~L~~L 331 (612)
.+.+ -.+++.|+.|.|+.|.+.++. +...-..+..|+.|.|+++... ..-+.+..+++|+.+
T Consensus 363 -----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 363 -----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred -----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 0111 234566666666666443221 1111233555666666666543 333455566667777
Q ss_pred cccccccccc
Q 007219 332 VLEDCKRLQS 341 (612)
Q Consensus 332 ~l~~c~~L~~ 341 (612)
++-+|.....
T Consensus 432 ~l~~~q~vtk 441 (483)
T KOG4341|consen 432 ELIDCQDVTK 441 (483)
T ss_pred eeechhhhhh
Confidence 7666665544
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=9.5e-09 Score=103.62 Aligned_cols=210 Identities=22% Similarity=0.332 Sum_probs=121.4
Q ss_pred cCCCCcEEeccCCCCCccccc--ccccCCCCCEEecCCCCCCcc--chhhhhccccccEEEccCcCCCCCC---hhhhcc
Q 007219 111 LLSGLVRLTLYGCKNFERIPS--TISALKYLSTLNLSGLWKLRE--FPEIVESMEQLLELHLEGTAIRGLP---ASIEFL 183 (612)
Q Consensus 111 ~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~--~p~~l~~l~~L~~L~L~~~~i~~lp---~~i~~l 183 (612)
++.+|++|++..|..+....- -...+++|++|++++|..+.. +-....+++.++.+.+.|+.-.++. ..-...
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 344455555554444332110 112355566666666654443 1122233444555544443222211 111334
Q ss_pred CCCcEEeecCCCCCCccc--ccccCCCCCCEEEecCCCCCcccc--cccCCCCCCcEEeccCCCCCcccCccccccccee
Q 007219 184 SGLVLLNLKDCKNLKSLP--RTINGLRSLKTLHLSGCSKLKNVP--ENLGKVESLEVLDISGCKGLLQSTSWFLHFPITL 259 (612)
Q Consensus 184 ~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 259 (612)
..+..+++..|..++... ..-..+..|+.|..++|...+..+ .-..+..+|+.|-+.+|+.+....
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~---------- 337 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG---------- 337 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh----------
Confidence 456666666775554322 223467889999999998866543 223567899999999998544211
Q ss_pred cccCCCCccccCCC-CCCCCcccEEeccCCCCCCCC-CCccccCcCCCCEEeccCCCcc------ccchhhhcccccccc
Q 007219 260 IRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGA-IPSDIGHLCSLKELYLSRNSFV------SLPASIIHLSKLGKM 331 (612)
Q Consensus 260 ~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~-ip~~l~~l~sL~~L~Ls~n~l~------~lp~~i~~L~~L~~L 331 (612)
+.. -.+++.|+.+++..|....+. +-..-.+++.|+.|.|+.|... .+..+-..+..|..+
T Consensus 338 -----------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~l 406 (483)
T KOG4341|consen 338 -----------FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVL 406 (483)
T ss_pred -----------hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccccee
Confidence 111 346788999999999764433 4444567899999999988543 223344556778999
Q ss_pred cccccccccc
Q 007219 332 VLEDCKRLQS 341 (612)
Q Consensus 332 ~l~~c~~L~~ 341 (612)
.+++|+.+..
T Consensus 407 EL~n~p~i~d 416 (483)
T KOG4341|consen 407 ELDNCPLITD 416 (483)
T ss_pred eecCCCCchH
Confidence 9999987654
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.3e-08 Score=98.37 Aligned_cols=177 Identities=27% Similarity=0.264 Sum_probs=128.6
Q ss_pred CCCeeecCCcCCc--ccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccch--hhhhccccccEE
Q 007219 91 CLQELHLDGTDIK--ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFP--EIVESMEQLLEL 166 (612)
Q Consensus 91 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p--~~l~~l~~L~~L 166 (612)
.|++|||+.+.|+ .+..-+..+.+|+.|.|.+......+-..+++-.+|+.|++++|+.+.... -.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5889999998887 455556778899999999887767777778888999999999998777643 467789999999
Q ss_pred EccCcCCCC--CChhhhc-cCCCcEEeecCCCCC---CcccccccCCCCCCEEEecCCCCCcc-cccccCCCCCCcEEec
Q 007219 167 HLEGTAIRG--LPASIEF-LSGLVLLNLKDCKNL---KSLPRTINGLRSLKTLHLSGCSKLKN-VPENLGKVESLEVLDI 239 (612)
Q Consensus 167 ~L~~~~i~~--lp~~i~~-l~~L~~L~L~~c~~l---~~lp~~i~~l~~L~~L~Ls~c~~l~~-lp~~l~~l~~L~~L~l 239 (612)
+++.+.+.. .-..+.+ -++|+.|+|++|... ..+......+++|..||+++|..+.. ....+.+++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999886653 1112222 357888999988643 12223345789999999999887754 3345677899999999
Q ss_pred cCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCC
Q 007219 240 SGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDC 288 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~ 288 (612)
+.|.++.+. .+-.+...++|.+|++.+|
T Consensus 346 sRCY~i~p~---------------------~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPE---------------------TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChH---------------------HeeeeccCcceEEEEeccc
Confidence 999866521 1122556677888877765
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=7.8e-07 Score=99.88 Aligned_cols=105 Identities=25% Similarity=0.367 Sum_probs=79.8
Q ss_pred CCEEecCCCCCCccchhhhhccccccEEEccCcCCC-CCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecC
Q 007219 139 LSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIR-GLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSG 217 (612)
Q Consensus 139 L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 217 (612)
++.|+|+++...+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 567777777766777777888888888888888776 5777788888888888888877777888888888888888888
Q ss_pred CCCCcccccccCCC-CCCcEEeccCCC
Q 007219 218 CSKLKNVPENLGKV-ESLEVLDISGCK 243 (612)
Q Consensus 218 c~~l~~lp~~l~~l-~~L~~L~l~~~~ 243 (612)
|...+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 87777777776553 455666666665
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=1.1e-06 Score=98.76 Aligned_cols=111 Identities=24% Similarity=0.276 Sum_probs=98.0
Q ss_pred CCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCC-CCChhhhccCCCcEEeec
Q 007219 114 GLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIR-GLPASIEFLSGLVLLNLK 192 (612)
Q Consensus 114 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~ 192 (612)
.++.|+|+++.....+|..+..+++|+.|+|++|...+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778999998887889999999999999999999888899999999999999999999998 589999999999999999
Q ss_pred CCCCCCcccccccCC-CCCCEEEecCCCCCccc
Q 007219 193 DCKNLKSLPRTINGL-RSLKTLHLSGCSKLKNV 224 (612)
Q Consensus 193 ~c~~l~~lp~~i~~l-~~L~~L~Ls~c~~l~~l 224 (612)
+|...+.+|..+..+ .++..+++.+|..+...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCC
Confidence 999999999888764 57788999988755443
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=2.1e-06 Score=89.05 Aligned_cols=61 Identities=21% Similarity=0.545 Sum_probs=29.3
Q ss_pred CCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccC
Q 007219 18 VPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFP 83 (612)
Q Consensus 18 l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p 83 (612)
+++++.|++++| .+..+| ....+|+.|.+++|..++.+|..+ .++|++|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc
Confidence 455555555555 344443 122345555555555555555322 3455555555554444444
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.6e-08 Score=94.57 Aligned_cols=176 Identities=23% Similarity=0.287 Sum_probs=101.1
Q ss_pred cccEEEccCcCCCC--CChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccc--cccCCCCCCcEE
Q 007219 162 QLLELHLEGTAIRG--LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVP--ENLGKVESLEVL 237 (612)
Q Consensus 162 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L 237 (612)
.|++|||+...|+. +-..+..+.+|+.|.|.+...-..+-..|..-.+|+.|++++|+.++... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36666666665552 33445566666666666666655555566666677777777776655432 234567777777
Q ss_pred eccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCC--CCCCCCCccccCcCCCCEEeccCCC-
Q 007219 238 DISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCN--LGEGAIPSDIGHLCSLKELYLSRNS- 314 (612)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~--l~~~~ip~~l~~l~sL~~L~Ls~n~- 314 (612)
++++|....+.-. ..+ -.--+.|+.|+|+++. +....+..-...+++|.+|||+.|.
T Consensus 266 NlsWc~l~~~~Vt------------------v~V--~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVT------------------VAV--AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhh------------------HHH--hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 7777764331100 000 0011356667777763 2111122223346777777877764
Q ss_pred cc-ccchhhhccccccccccccccccccCCC------CCCCccEEeccCCCC
Q 007219 315 FV-SLPASIIHLSKLGKMVLEDCKRLQSLPQ------PPPSIVSIRVDGCTS 359 (612)
Q Consensus 315 l~-~lp~~i~~L~~L~~L~l~~c~~L~~lp~------lp~sL~~L~i~~C~~ 359 (612)
++ ..-..+.+++.|++|.++.|-.+ +|+ --|+|.+|++.||-+
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 33 44456677778888888887654 221 136778888887754
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=7.1e-06 Score=62.09 Aligned_cols=57 Identities=28% Similarity=0.417 Sum_probs=31.2
Q ss_pred CccEEEccCCcCCcccC-ccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCC
Q 007219 67 SLETLVLSGCLKLKKFP-DIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCK 124 (612)
Q Consensus 67 ~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~ 124 (612)
+|++|++++|. +..+| +.+.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555553 33333 345556666666666666665543 45566666666666553
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.98 E-value=7.6e-06 Score=61.93 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=27.2
Q ss_pred CccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcC
Q 007219 44 KLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTD 101 (612)
Q Consensus 44 ~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~ 101 (612)
+|++|++++| .++.+|...+ +++|++|++++|.....-|..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555553 4444444332 5555555555544333333444555555555555544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=1.6e-06 Score=92.95 Aligned_cols=174 Identities=26% Similarity=0.266 Sum_probs=94.5
Q ss_pred CCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCe
Q 007219 15 FSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQE 94 (612)
Q Consensus 15 l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~ 94 (612)
+..+.+|+.|++.+ ..+.++...+..+.+|++|++++ +.++.+...-.++.|+.|++.+|. +..+.. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNL-ISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheeccc-cccccccchhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence 56666677777665 34444443366667777777776 455555554445667777777665 333332 333666666
Q ss_pred eecCCcCCcccccc-cccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccc--cccEEEccCc
Q 007219 95 LHLDGTDIKELPLS-IELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESME--QLLELHLEGT 171 (612)
Q Consensus 95 L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~--~L~~L~L~~~ 171 (612)
++++++.+..+... ...+.+++.+.+.++..... ..+..+..+..+++..+.....- .+..+. .|++++++++
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGN 242 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccC
Confidence 77777666665543 35566666666666543211 11222222333333333221110 111112 3677777777
Q ss_pred CCCCCChhhhccCCCcEEeecCCCC
Q 007219 172 AIRGLPASIEFLSGLVLLNLKDCKN 196 (612)
Q Consensus 172 ~i~~lp~~i~~l~~L~~L~L~~c~~ 196 (612)
.+..++..+..+..+..|++.+++.
T Consensus 243 ~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccccccccccccccccccchhhccc
Confidence 7777766666777777777776543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=1.6e-06 Score=92.95 Aligned_cols=107 Identities=32% Similarity=0.333 Sum_probs=55.2
Q ss_pred CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEec
Q 007219 65 MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNL 144 (612)
Q Consensus 65 l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 144 (612)
+++|+.|++.++. ++.+...+..+++|++|++++|.|+.+.. +..+..|+.|++.+|.. ..+. .+..++.|+.+++
T Consensus 94 ~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i-~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLI-SDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccc-hhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcc-hhcc-CCccchhhhcccC
Confidence 5666666666654 33433335556666666666666665543 44555566666666542 2221 1333555555555
Q ss_pred CCCCCCccch-hhhhccccccEEEccCcCCCCC
Q 007219 145 SGLWKLREFP-EIVESMEQLLELHLEGTAIRGL 176 (612)
Q Consensus 145 ~~~~~l~~~p-~~l~~l~~L~~L~L~~~~i~~l 176 (612)
++|.....-+ . ...+.+++.+++.+|.+..+
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 5553332222 1 34555555555555555543
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=4.2e-06 Score=93.95 Aligned_cols=149 Identities=25% Similarity=0.265 Sum_probs=101.3
Q ss_pred CCCccEEecCCCCCCc-cCCCccC--CCCccEEEccCCcCCc-ccCccccCCCCCCeeecCCcCCcccccccccCCCCcE
Q 007219 42 HKKLIFLNLKGCTSLR-ALPAKIF--MKSLETLVLSGCLKLK-KFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVR 117 (612)
Q Consensus 42 l~~L~~L~L~~c~~l~-~lp~~~~--l~~L~~L~L~~c~~l~-~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 117 (612)
-.+|+.|+++|...+. ..|..++ +|+|+.|.+.+=.... .+-....++++|..||+++|+|+.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4689999999854442 3344444 9999999999844222 2334457899999999999999998 78999999999
Q ss_pred EeccCCCCCc-ccccccccCCCCCEEecCCCCCCccc--h----hhhhccccccEEEccCcCCCC--CChhhhccCCCcE
Q 007219 118 LTLYGCKNFE-RIPSTISALKYLSTLNLSGLWKLREF--P----EIVESMEQLLELHLEGTAIRG--LPASIEFLSGLVL 188 (612)
Q Consensus 118 L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~--p----~~l~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~ 188 (612)
|.+.+-.... .--..+..|++|+.||+|.-...... . +.-..+|+|+.||.++|.+.+ +...+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9997643221 11124678999999999986554432 1 222357889999999888774 2233333344444
Q ss_pred Eee
Q 007219 189 LNL 191 (612)
Q Consensus 189 L~L 191 (612)
+.+
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=6.3e-07 Score=96.26 Aligned_cols=183 Identities=26% Similarity=0.266 Sum_probs=107.3
Q ss_pred ccccccCCCCcEEeccCCCCCcccccccccC-CCCCEEecCCCCCCccchhhhhc----------cccccEEEccCcCCC
Q 007219 106 PLSIELLSGLVRLTLYGCKNFERIPSTISAL-KYLSTLNLSGLWKLREFPEIVES----------MEQLLELHLEGTAIR 174 (612)
Q Consensus 106 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l-~~L~~L~L~~~~~l~~~p~~l~~----------l~~L~~L~L~~~~i~ 174 (612)
|-+|..+.+|++|.+++|.... . .++..+ ..|++|...+ .+..+-+.+.. ...|...+.++|.++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 5667778888888888875322 1 111111 1233332211 11111111111 124556667777777
Q ss_pred CCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCccccc
Q 007219 175 GLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLH 254 (612)
Q Consensus 175 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 254 (612)
.+..++.-++.|+.|+|+.|+....- .+..++.|++|||++|. +..+|.--..-..|+.|.+++|....
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~t-------- 246 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTT-------- 246 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHh--------
Confidence 77788888888888888887754432 56677788888888764 33333311111237777777765222
Q ss_pred ccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccc
Q 007219 255 FPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLP 319 (612)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp 319 (612)
+..+.++.+|+.||+++|-+.+-.--.-++.+.+|..|+|.||.+-.-|
T Consensus 247 ----------------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 247 ----------------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ----------------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 2235677888888888887755333345667788888888888765444
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=3.3e-07 Score=98.33 Aligned_cols=126 Identities=26% Similarity=0.189 Sum_probs=82.9
Q ss_pred CCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccC
Q 007219 91 CLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEG 170 (612)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~ 170 (612)
.|.+.+.++|.+..+..+++-++.|+.|+|++|+..+.- .+..++.|++|||+.| .+..+|..-..-..|..|.+.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeeeecc
Confidence 366667777777777777888888888888887754332 4667778888888877 4444443222222377888888
Q ss_pred cCCCCCChhhhccCCCcEEeecCCCCCCc-ccccccCCCCCCEEEecCCCC
Q 007219 171 TAIRGLPASIEFLSGLVLLNLKDCKNLKS-LPRTINGLRSLKTLHLSGCSK 220 (612)
Q Consensus 171 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~ 220 (612)
|.++++ ..+.++.+|+.||+++|-.... =...+..+..|+.|+|.||..
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 877776 3567778888888887654321 112344566777777777764
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=9e-05 Score=51.73 Aligned_cols=39 Identities=28% Similarity=0.555 Sum_probs=23.4
Q ss_pred cccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccc
Q 007219 279 CLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLP 319 (612)
Q Consensus 279 ~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp 319 (612)
+|++|++++|++.+ +|..++.+++|+.|++++|.++.++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 46666666666643 5655666666666666666666443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=7.3e-05 Score=84.12 Aligned_cols=131 Identities=25% Similarity=0.308 Sum_probs=94.6
Q ss_pred CCCCcEEeccCCCCCccc-cccc-ccCCCCCEEecCCCCCC-ccchhhhhccccccEEEccCcCCCCCChhhhccCCCcE
Q 007219 112 LSGLVRLTLYGCKNFERI-PSTI-SALKYLSTLNLSGLWKL-REFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVL 188 (612)
Q Consensus 112 l~~L~~L~L~~~~~l~~l-p~~l-~~l~~L~~L~L~~~~~l-~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 188 (612)
-.+|++|+++|...+..- |..+ ..||+|+.|.+.+-... ..+-....++++|..||++++.++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 347888888875443221 1122 35899999999886543 33667778899999999999999999 88999999999
Q ss_pred EeecCCCCCC-cccccccCCCCCCEEEecCCCCCccc--c----cccCCCCCCcEEeccCCC
Q 007219 189 LNLKDCKNLK-SLPRTINGLRSLKTLHLSGCSKLKNV--P----ENLGKVESLEVLDISGCK 243 (612)
Q Consensus 189 L~L~~c~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~l--p----~~l~~l~~L~~L~l~~~~ 243 (612)
|.+++-.... .--..+.+|++|+.||+|.......- . +.-..+|+|+.|+.++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9998855443 22245678999999999986654432 1 122348999999998765
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=7.3e-05 Score=52.21 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=34.6
Q ss_pred CCCCEEeccCCCccccchhhhccccccccccccccccccCCCC
Q 007219 303 CSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQP 345 (612)
Q Consensus 303 ~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~l 345 (612)
++|++|++++|+++.+|..+.+|++|+.|++++| .+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 4799999999999999998999999999999998 45565543
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.45 E-value=1.9e-05 Score=86.24 Aligned_cols=132 Identities=30% Similarity=0.395 Sum_probs=62.6
Q ss_pred CCccEEeccCCCCcc--ccccc-cccCCCccEEecCCCCCCccC---CCccCCCCccEEEccCC-cCCcccC----cccc
Q 007219 19 PNLEQLILEGCTRLH--EIHPS-LLVHKKLIFLNLKGCTSLRAL---PAKIFMKSLETLVLSGC-LKLKKFP----DIVG 87 (612)
Q Consensus 19 ~~L~~L~L~~c~~l~--~i~~s-i~~l~~L~~L~L~~c~~l~~l---p~~~~l~~L~~L~L~~c-~~l~~~p----~~~~ 87 (612)
..++.+.+..+.... .+... ...++.|+.|.+.+|..+... +....++.|+.|++++| ......+ ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 345555555443322 11122 234678888888887776652 22223788888888873 2222221 1223
Q ss_pred CCCCCCeeecCCcC-Cccc--ccccccCCCCcEEeccCCCCCc--ccccccccCCCCCEEecCCCCCC
Q 007219 88 SMECLQELHLDGTD-IKEL--PLSIELLSGLVRLTLYGCKNFE--RIPSTISALKYLSTLNLSGLWKL 150 (612)
Q Consensus 88 ~l~~L~~L~L~~~~-i~~l--p~~i~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l 150 (612)
.+++|+.|+++++. ++.. ..-...+++|+.|.+.+|..+. .+-.....++.|++|++++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 44566666666555 3321 1111124455555555554321 11111233445555555555443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.30 E-value=1.4e-05 Score=69.14 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=50.8
Q ss_pred cCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEE
Q 007219 41 VHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRL 118 (612)
Q Consensus 41 ~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 118 (612)
....|...+|++ +.++.+|..+. ++.+++|++++|. +..+|+.+..++.|+.|+++.|.+...|..+..+.+|-.|
T Consensus 51 ~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 344455556666 45566665544 5566666666654 5566666666677777777777766666666666666666
Q ss_pred eccCCC
Q 007219 119 TLYGCK 124 (612)
Q Consensus 119 ~L~~~~ 124 (612)
+..++.
T Consensus 129 ds~~na 134 (177)
T KOG4579|consen 129 DSPENA 134 (177)
T ss_pred cCCCCc
Confidence 666554
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=5.4e-05 Score=73.75 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=44.9
Q ss_pred CcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccc--hhhhccccccccccccccccccCCCCCCCccEEecc
Q 007219 278 YCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLP--ASIIHLSKLGKMVLEDCKRLQSLPQPPPSIVSIRVD 355 (612)
Q Consensus 278 ~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp--~~i~~L~~L~~L~l~~c~~L~~lp~lp~sL~~L~i~ 355 (612)
+++..+-+..|.+.+..--.....++++-.|+|+.+++-+.. ..+..++.|..|.+.+.+....+.. .-=+.|-|.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIa 276 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIA 276 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEe
Confidence 344444555554433333333444555556666666655332 2456666677777766665555433 112345556
Q ss_pred CCCCcceec
Q 007219 356 GCTSLETIS 364 (612)
Q Consensus 356 ~C~~L~~l~ 364 (612)
..+.++.+.
T Consensus 277 RL~~v~vLN 285 (418)
T KOG2982|consen 277 RLTKVQVLN 285 (418)
T ss_pred eccceEEec
Confidence 666666665
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0003 Score=68.71 Aligned_cols=85 Identities=25% Similarity=0.274 Sum_probs=53.3
Q ss_pred ccccccEEEccCcCCCC---CChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCc-ccccccCCCCCC
Q 007219 159 SMEQLLELHLEGTAIRG---LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLK-NVPENLGKVESL 234 (612)
Q Consensus 159 ~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~-~lp~~l~~l~~L 234 (612)
.+..+++++|.+|.|.+ +...+.++|.|+.|+|+.|.....+...-..+.+|++|-+.|....- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45667888888887774 45556778888888888776543332111345678888887754322 222334556777
Q ss_pred cEEeccCCC
Q 007219 235 EVLDISGCK 243 (612)
Q Consensus 235 ~~L~l~~~~ 243 (612)
+.|.++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 777776653
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=6.6e-05 Score=82.00 Aligned_cols=35 Identities=34% Similarity=0.519 Sum_probs=18.8
Q ss_pred CCCccEEEccCCcCCcc--cCccccCCCCCCeeecCC
Q 007219 65 MKSLETLVLSGCLKLKK--FPDIVGSMECLQELHLDG 99 (612)
Q Consensus 65 l~~L~~L~L~~c~~l~~--~p~~~~~l~~L~~L~L~~ 99 (612)
++.|+.|.+.+|..+.. +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45566666666654443 223344555666666654
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.05 E-value=0.00014 Score=70.12 Aligned_cols=184 Identities=20% Similarity=0.152 Sum_probs=96.1
Q ss_pred CCCCccEEeccCCCCccccc----cccccCCCccEEecCCCCCC---ccCC--------CccCCCCccEEEccCCcCCcc
Q 007219 17 RVPNLEQLILEGCTRLHEIH----PSLLVHKKLIFLNLKGCTSL---RALP--------AKIFMKSLETLVLSGCLKLKK 81 (612)
Q Consensus 17 ~l~~L~~L~L~~c~~l~~i~----~si~~l~~L~~L~L~~c~~l---~~lp--------~~~~l~~L~~L~L~~c~~l~~ 81 (612)
.+..+.+++|+|++.-++-. ..|++-.+|++.++++---- ..+| ....||.|+..+|++|.+-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46667788888877655433 33455667777777652110 0111 111245555555555443333
Q ss_pred cCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCccc----cc---------ccccCCCCCEEecCCCC
Q 007219 82 FPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERI----PS---------TISALKYLSTLNLSGLW 148 (612)
Q Consensus 82 ~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l----p~---------~l~~l~~L~~L~L~~~~ 148 (612)
+|+.+ -.-|..-..|.+|.+.+|..-..- .. -...-|.|++.....|
T Consensus 108 ~~e~L-------------------~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN- 167 (388)
T COG5238 108 FPEEL-------------------GDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN- 167 (388)
T ss_pred cchHH-------------------HHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-
Confidence 33221 122344445555555554322111 10 1233466777777766
Q ss_pred CCccch-----hhhhccccccEEEccCcCCCC------CChhhhccCCCcEEeecCCCCCC----cccccccCCCCCCEE
Q 007219 149 KLREFP-----EIVESMEQLLELHLEGTAIRG------LPASIEFLSGLVLLNLKDCKNLK----SLPRTINGLRSLKTL 213 (612)
Q Consensus 149 ~l~~~p-----~~l~~l~~L~~L~L~~~~i~~------lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L 213 (612)
.+...+ ..+..-.+|+++.+..|.|.. +-..+..+.+|+.|+|.+|.... .+...++.++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 333333 233444678888888888773 12234567788888888876542 233444556666666
Q ss_pred EecCCCC
Q 007219 214 HLSGCSK 220 (612)
Q Consensus 214 ~Ls~c~~ 220 (612)
.+..|-.
T Consensus 248 ~lnDCll 254 (388)
T COG5238 248 RLNDCLL 254 (388)
T ss_pred cccchhh
Confidence 6666643
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.94 E-value=6.8e-05 Score=64.94 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=47.2
Q ss_pred CCCCCeeecCCcCCcccccccc-cCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEE
Q 007219 89 MECLQELHLDGTDIKELPLSIE-LLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELH 167 (612)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~ 167 (612)
..+|...+|++|.++.+|..+. .++.++.|++.+|. +..+|..+..++.|+.|+++.| .+...|..+..+.++-.|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 3445555566666665555433 23345555555443 3444544555555555555555 3334455555566666666
Q ss_pred ccCcCCCCCCh
Q 007219 168 LEGTAIRGLPA 178 (612)
Q Consensus 168 L~~~~i~~lp~ 178 (612)
..++.+.++|-
T Consensus 130 s~~na~~eid~ 140 (177)
T KOG4579|consen 130 SPENARAEIDV 140 (177)
T ss_pred CCCCccccCcH
Confidence 66666666554
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.61 E-value=0.0016 Score=62.97 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=32.0
Q ss_pred CcccEEeccCCCCCCCCCC----ccccCcCCCCEEeccCCCccccch-----hhhccccccccccccc
Q 007219 278 YCLRKLDISDCNLGEGAIP----SDIGHLCSLKELYLSRNSFVSLPA-----SIIHLSKLGKMVLEDC 336 (612)
Q Consensus 278 ~~L~~L~Ls~~~l~~~~ip----~~l~~l~sL~~L~Ls~n~l~~lp~-----~i~~L~~L~~L~l~~c 336 (612)
..|+.+.+..|.+....+. ..+..+.+|+.|||..|.|+..-+ .+...+.|+.|.+.+|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 3577777777766332211 123456778888888887763222 2233334455555444
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.54 E-value=0.005 Score=57.20 Aligned_cols=106 Identities=24% Similarity=0.229 Sum_probs=65.5
Q ss_pred cCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccccc--ccccCCCCcEE
Q 007219 41 VHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPL--SIELLSGLVRL 118 (612)
Q Consensus 41 ~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L 118 (612)
.+.....+||++ +.+..++....++.|.+|.|..|.+...-|..-.-+++|..|.|.+|.|.++-+ .+..+++|+.|
T Consensus 40 ~~d~~d~iDLtd-Ndl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 40 TLDQFDAIDLTD-NDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccccceecccc-cchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345667777877 445555544447788888888887666666655667778888888888876542 25556677777
Q ss_pred eccCCCCCccc---ccccccCCCCCEEecCCC
Q 007219 119 TLYGCKNFERI---PSTISALKYLSTLNLSGL 147 (612)
Q Consensus 119 ~L~~~~~l~~l---p~~l~~l~~L~~L~L~~~ 147 (612)
.+-+|.....- --.+..+++|++||+.+-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 76665422110 012445666666666543
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.07 E-value=0.0095 Score=55.41 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=67.9
Q ss_pred CCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccCc--cccCCCCCCe
Q 007219 19 PNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFPD--IVGSMECLQE 94 (612)
Q Consensus 19 ~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p~--~~~~l~~L~~ 94 (612)
.+...++|+++.. ..+ ..+..++.|.+|.+.+ +.+..+.+.+. +++|..|.|.+|+ +..+.+ -+..++.|++
T Consensus 42 d~~d~iDLtdNdl-~~l-~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKL-DNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccch-hhc-ccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence 3456677776433 222 2355677888888876 45666665555 7888888888876 333332 2567788888
Q ss_pred eecCCcCCccccc----ccccCCCCcEEeccCCC
Q 007219 95 LHLDGTDIKELPL----SIELLSGLVRLTLYGCK 124 (612)
Q Consensus 95 L~L~~~~i~~lp~----~i~~l~~L~~L~L~~~~ 124 (612)
|.+-+|.++.-.. -+..+++|+.||..+-+
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888888875542 36678888888887644
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0066 Score=58.68 Aligned_cols=39 Identities=15% Similarity=0.029 Sum_probs=19.1
Q ss_pred cccCCCCCEEecCCCCCCccc---hhhhhccccccEEEccCc
Q 007219 133 ISALKYLSTLNLSGLWKLREF---PEIVESMEQLLELHLEGT 171 (612)
Q Consensus 133 l~~l~~L~~L~L~~~~~l~~~---p~~l~~l~~L~~L~L~~~ 171 (612)
+..+++|..|++..|+...-. -..+.-+++|++|+-...
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 344555666666666444311 123444555655554433
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.29 E-value=0.015 Score=56.24 Aligned_cols=65 Identities=28% Similarity=0.345 Sum_probs=43.2
Q ss_pred CCCCCcccEEeccCC--CCCCCCCCccccCcCCCCEEeccCCCccccc--hhhhcccccccccccccccc
Q 007219 274 LSGLYCLRKLDISDC--NLGEGAIPSDIGHLCSLKELYLSRNSFVSLP--ASIIHLSKLGKMVLEDCKRL 339 (612)
Q Consensus 274 l~~l~~L~~L~Ls~~--~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp--~~i~~L~~L~~L~l~~c~~L 339 (612)
+..++.|+.|.++.| +.. ..++.....+++|++|++++|++..+. ..+..+.+|..|++.+|...
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 455678889999888 443 334444555699999999999876321 23455666667777766543
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.11 E-value=0.0097 Score=34.60 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=14.8
Q ss_pred CCCEEeccCCCccccchhhhc
Q 007219 304 SLKELYLSRNSFVSLPASIIH 324 (612)
Q Consensus 304 sL~~L~Ls~n~l~~lp~~i~~ 324 (612)
+|++|+|++|+++.+|+++.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777776544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.0018 Score=62.83 Aligned_cols=80 Identities=26% Similarity=0.171 Sum_probs=42.7
Q ss_pred CCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccccc--ccccCCCCcEEe
Q 007219 42 HKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPL--SIELLSGLVRLT 119 (612)
Q Consensus 42 l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~ 119 (612)
+.+.+.||..||. +..+.....++.|++|.|+-|.+ ..+. .+..+++|++|+|..|.|..+.. .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkI-ssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKI-SSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcccceeEEeecccc-ccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445556666642 33332222267777777776653 2222 25667777777777777765542 234445555555
Q ss_pred ccCCC
Q 007219 120 LYGCK 124 (612)
Q Consensus 120 L~~~~ 124 (612)
|..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 54443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.33 E-value=0.22 Score=43.42 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=51.8
Q ss_pred CCCCCCCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccC-ccccCC
Q 007219 14 DFSRVPNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFP-DIVGSM 89 (612)
Q Consensus 14 ~l~~l~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p-~~~~~l 89 (612)
.|.++++|+.+.+.. .+..+.. .+..+++|+.+.+.. .+..++.... +++|+.+.+.. ....++ ..+.++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--ccccccccccccc
Confidence 477888888888863 4555654 456777888888876 3667776555 66788888865 233333 345567
Q ss_pred CCCCeeecCCcCCcccccc-cccCCCCcEEecc
Q 007219 90 ECLQELHLDGTDIKELPLS-IELLSGLVRLTLY 121 (612)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 121 (612)
++|+.+.+..+ +..++.. +.+. +|+.+.+.
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 78888877654 5555433 3333 56655554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.58 E-value=0.031 Score=32.46 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=8.9
Q ss_pred CCeeecCCcCCccccccc
Q 007219 92 LQELHLDGTDIKELPLSI 109 (612)
Q Consensus 92 L~~L~L~~~~i~~lp~~i 109 (612)
|++|++++|.++++|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555555555443
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.93 E-value=0.064 Score=28.97 Aligned_cols=16 Identities=50% Similarity=0.721 Sum_probs=6.8
Q ss_pred CCCEEeccCCCccccc
Q 007219 304 SLKELYLSRNSFVSLP 319 (612)
Q Consensus 304 sL~~L~Ls~n~l~~lp 319 (612)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555444
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.88 E-value=0.43 Score=41.47 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=10.1
Q ss_pred cCCCccEEecCCCCCCccCCCccC--CCCccEEEccC
Q 007219 41 VHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSG 75 (612)
Q Consensus 41 ~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~ 75 (612)
.+++|+.+.+.. .++.++...+ +++|+.+.+.+
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 344444444442 2333433332 33444444443
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=0.0097 Score=57.93 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=49.2
Q ss_pred CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccch--hhhcccccccccccccccccc
Q 007219 274 LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPA--SIIHLSKLGKMVLEDCKRLQS 341 (612)
Q Consensus 274 l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~--~i~~L~~L~~L~l~~c~~L~~ 341 (612)
...++.|+.|.|+-|.++. -..+..|+.|++|+|..|.|..+.+ -+.++++|+.|+|..++--..
T Consensus 37 c~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 4567888999999888853 3456778889999999998886663 467888888888887765443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.62 E-value=0.23 Score=26.78 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=4.7
Q ss_pred CCeeecCCcCCccc
Q 007219 92 LQELHLDGTDIKEL 105 (612)
Q Consensus 92 L~~L~L~~~~i~~l 105 (612)
|+.|++++|.++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.59 E-value=0.37 Score=29.05 Aligned_cols=21 Identities=48% Similarity=0.611 Sum_probs=16.8
Q ss_pred cCCCCEEeccCCCccccchhh
Q 007219 302 LCSLKELYLSRNSFVSLPASI 322 (612)
Q Consensus 302 l~sL~~L~Ls~n~l~~lp~~i 322 (612)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.59 E-value=0.37 Score=29.05 Aligned_cols=21 Identities=48% Similarity=0.611 Sum_probs=16.8
Q ss_pred cCCCCEEeccCCCccccchhh
Q 007219 302 LCSLKELYLSRNSFVSLPASI 322 (612)
Q Consensus 302 l~sL~~L~Ls~n~l~~lp~~i 322 (612)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.55 E-value=0.055 Score=50.48 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=55.2
Q ss_pred ccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-c--CCCCccEEEccCCcCCcccC-ccccCCCCCCeee
Q 007219 21 LEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-I--FMKSLETLVLSGCLKLKKFP-DIVGSMECLQELH 96 (612)
Q Consensus 21 L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~--~l~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~ 96 (612)
++.++-+++....+-...+.+++.++.|.+.+|..+...--. + ..++|+.|+|++|..++..- ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 678888887766666677788889999999998876643211 1 27899999999998766432 3345566666666
Q ss_pred cCC
Q 007219 97 LDG 99 (612)
Q Consensus 97 L~~ 99 (612)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=0.18 Score=47.21 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=47.6
Q ss_pred CCCCCCcccEEeccCCCCCCCCCCccccC-cCCCCEEeccCCC-cc-ccchhhhcccccccccccccccc
Q 007219 273 SLSGLYCLRKLDISDCNLGEGAIPSDIGH-LCSLKELYLSRNS-FV-SLPASIIHLSKLGKMVLEDCKRL 339 (612)
Q Consensus 273 ~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~-l~sL~~L~Ls~n~-l~-~lp~~i~~L~~L~~L~l~~c~~L 339 (612)
.+.++++++.|.+.+|.-.++.--.-+++ .++|+.|+|++|. |+ .--.++..+++|+.|.+.+.+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 36778889999999987654433333333 6889999999985 55 33457888888888888776543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.05 E-value=1.1 Score=26.93 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.0
Q ss_pred CCCCCeeecCCcCCcccccc
Q 007219 89 MECLQELHLDGTDIKELPLS 108 (612)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~ 108 (612)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45678888888888887764
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.05 E-value=1.1 Score=26.93 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.0
Q ss_pred CCCCCeeecCCcCCcccccc
Q 007219 89 MECLQELHLDGTDIKELPLS 108 (612)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~ 108 (612)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45678888888888887764
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=73.98 E-value=0.046 Score=59.22 Aligned_cols=177 Identities=22% Similarity=0.217 Sum_probs=95.5
Q ss_pred ccEEEccCCcCCcc----cCccccCCCCCCeeecCCcCCcc-----cccccccC-CCCcEEeccCCCCCc----cccccc
Q 007219 68 LETLVLSGCLKLKK----FPDIVGSMECLQELHLDGTDIKE-----LPLSIELL-SGLVRLTLYGCKNFE----RIPSTI 133 (612)
Q Consensus 68 L~~L~L~~c~~l~~----~p~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~l 133 (612)
+..|.|.+|..... +...+..+..|..|++++|++.. +-..+... ..|+.|++..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666653332 22334556667777777777661 11222222 345556665554322 233344
Q ss_pred ccCCCCCEEecCCCCCCcc----chhhhh----ccccccEEEccCcCCCC-----CChhhhccCC-CcEEeecCCCCCCc
Q 007219 134 SALKYLSTLNLSGLWKLRE----FPEIVE----SMEQLLELHLEGTAIRG-----LPASIEFLSG-LVLLNLKDCKNLKS 199 (612)
Q Consensus 134 ~~l~~L~~L~L~~~~~l~~----~p~~l~----~l~~L~~L~L~~~~i~~-----lp~~i~~l~~-L~~L~L~~c~~l~~ 199 (612)
.....++.++++.|..... ++..+. ...++++|+++++.++. +...+...+. +..|++.+|.....
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4456666666666654321 222333 35667777777776663 2223344444 55577766655432
Q ss_pred ----ccccccCC-CCCCEEEecCCCCCccc----ccccCCCCCCcEEeccCCCC
Q 007219 200 ----LPRTINGL-RSLKTLHLSGCSKLKNV----PENLGKVESLEVLDISGCKG 244 (612)
Q Consensus 200 ----lp~~i~~l-~~L~~L~Ls~c~~l~~l----p~~l~~l~~L~~L~l~~~~~ 244 (612)
+.+.+..+ ..++.++++.|++.+.- .+.+..++.++.+.+..++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 33334444 66777888877766543 33445566777777777663
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.20 E-value=2.3 Score=25.76 Aligned_cols=18 Identities=56% Similarity=0.678 Sum_probs=13.7
Q ss_pred CCCCEEeccCCCccccch
Q 007219 303 CSLKELYLSRNSFVSLPA 320 (612)
Q Consensus 303 ~sL~~L~Ls~n~l~~lp~ 320 (612)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367788888888887775
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.67 E-value=4.4 Score=24.31 Aligned_cols=16 Identities=50% Similarity=0.943 Sum_probs=9.9
Q ss_pred CCCccEEeccCCCCcc
Q 007219 18 VPNLEQLILEGCTRLH 33 (612)
Q Consensus 18 l~~L~~L~L~~c~~l~ 33 (612)
+++|++|+|++|..++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3566666666666554
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=64.21 E-value=0.21 Score=47.72 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=31.2
Q ss_pred CCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCC
Q 007219 136 LKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCK 195 (612)
Q Consensus 136 l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 195 (612)
++.|..|+++.+ .+..+|+.++....++.+++..|.....|.+.+..++++++++..+.
T Consensus 64 ~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 64 LTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 333444444433 33445555555555555555556555666666655555555555543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=62.65 E-value=0.27 Score=47.01 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=41.3
Q ss_pred cccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcE
Q 007219 39 LLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVR 117 (612)
Q Consensus 39 i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 117 (612)
+...+..+.||++.+ .+..+...+. +..|..|+++.+. ...+|+.++....++.+++..|+.+..|.+++.++.++.
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 445555555555542 2222322222 4445555555433 444555555555555555555555555555555555555
Q ss_pred EeccCCC
Q 007219 118 LTLYGCK 124 (612)
Q Consensus 118 L~L~~~~ 124 (612)
+++.++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 5554433
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=61.10 E-value=0.23 Score=53.94 Aligned_cols=89 Identities=27% Similarity=0.287 Sum_probs=55.3
Q ss_pred cCCCCCEEecCCCCCCcc----chhhhhcccc-ccEEEccCcCCCC-----CChhhhcc-CCCcEEeecCCCCCC----c
Q 007219 135 ALKYLSTLNLSGLWKLRE----FPEIVESMEQ-LLELHLEGTAIRG-----LPASIEFL-SGLVLLNLKDCKNLK----S 199 (612)
Q Consensus 135 ~l~~L~~L~L~~~~~l~~----~p~~l~~l~~-L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~c~~l~----~ 199 (612)
...++++|++.+|..... +...+...+. +.+|++..|.+.+ +...+..+ ..++.+++..|.... .
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 355667777777654422 2234445555 6667777776653 33344444 567888888877654 3
Q ss_pred ccccccCCCCCCEEEecCCCCCcc
Q 007219 200 LPRTINGLRSLKTLHLSGCSKLKN 223 (612)
Q Consensus 200 lp~~i~~l~~L~~L~Ls~c~~l~~ 223 (612)
+...+..++.++.|.++++.....
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccH
Confidence 445566777888888888776543
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.67 E-value=4.6 Score=23.61 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=7.0
Q ss_pred CCCCEEeccCCCcc
Q 007219 303 CSLKELYLSRNSFV 316 (612)
Q Consensus 303 ~sL~~L~Ls~n~l~ 316 (612)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666554
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.80 E-value=8.2 Score=23.40 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=10.7
Q ss_pred CCCCEEeccCCCcccc
Q 007219 303 CSLKELYLSRNSFVSL 318 (612)
Q Consensus 303 ~sL~~L~Ls~n~l~~l 318 (612)
.+|+.|+++.|.++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4677777777766533
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.07 E-value=9.5 Score=41.34 Aligned_cols=19 Identities=16% Similarity=0.523 Sum_probs=13.4
Q ss_pred CCCCCCeEEEEEEEEEeec
Q 007219 437 SFNKNKVVGYAICCVFHVN 455 (612)
Q Consensus 437 ~~~~~~~~gf~~c~v~~~~ 455 (612)
|+...+.+||++--||.-.
T Consensus 440 ~~~~~~~l~ftv~G~f~d~ 458 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFRDG 458 (585)
T ss_pred eecccceEEEEEEEEeecC
Confidence 6655558888888887543
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=37.28 E-value=25 Score=21.48 Aligned_cols=14 Identities=50% Similarity=0.470 Sum_probs=10.4
Q ss_pred CCCCEEeccCCCcc
Q 007219 303 CSLKELYLSRNSFV 316 (612)
Q Consensus 303 ~sL~~L~Ls~n~l~ 316 (612)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888765
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.29 E-value=29 Score=37.80 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=51.7
Q ss_pred hccccccEEEccCcCCCCC---ChhhhccCCCcEEeecCCCCCCcccccccC--CCCCCEEEecCCCCCccccc------
Q 007219 158 ESMEQLLELHLEGTAIRGL---PASIEFLSGLVLLNLKDCKNLKSLPRTING--LRSLKTLHLSGCSKLKNVPE------ 226 (612)
Q Consensus 158 ~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~--l~~L~~L~Ls~c~~l~~lp~------ 226 (612)
.+.+.+..+.|++|.+..+ .......++|+.|+|++|........++.. ..-|++|-+.||+.++.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 4567788888888877754 333456788999999988433322233333 34578888999888776532
Q ss_pred -ccCCCCCCcEEe
Q 007219 227 -NLGKVESLEVLD 238 (612)
Q Consensus 227 -~l~~l~~L~~L~ 238 (612)
....+|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 123456666654
No 92
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=21.64 E-value=30 Score=22.20 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=14.0
Q ss_pred EEEeecCCceEEeeeeEEeeec
Q 007219 520 FQPLWGPGLEVKKCGFHPVYIH 541 (612)
Q Consensus 520 ~~~~~~~~~~vk~cGv~lvy~~ 541 (612)
+.++....+.-++||.+.+|+.
T Consensus 10 ~~~~~~~~irC~~CG~RIlyK~ 31 (32)
T PF03604_consen 10 VELKPGDPIRCPECGHRILYKK 31 (32)
T ss_dssp E-BSTSSTSSBSSSS-SEEBE-
T ss_pred eEcCCCCcEECCcCCCeEEEec
Confidence 3333445568899999999974
Done!