Query 007219
Match_columns 612
No_of_seqs 441 out of 4102
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 20:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-32 6.1E-37 315.0 24.6 356 2-358 275-715 (768)
2 4eco_A Uncharacterized protein 100.0 1.5E-32 5E-37 308.9 22.9 346 6-358 192-598 (636)
3 4eco_A Uncharacterized protein 100.0 6.9E-32 2.4E-36 303.4 24.8 323 34-364 197-582 (636)
4 3rgz_A Protein brassinosteroid 100.0 4.2E-32 1.4E-36 311.9 22.4 345 15-360 339-740 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 6.2E-31 2.1E-35 301.8 25.0 343 8-358 436-838 (876)
6 4ecn_A Leucine-rich repeat pro 100.0 5.3E-30 1.8E-34 294.0 26.6 321 35-364 440-822 (876)
7 3t6q_A CD180 antigen; protein- 100.0 4.1E-29 1.4E-33 279.6 31.7 355 1-358 38-460 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-29 9.3E-34 281.1 28.3 351 1-357 37-555 (606)
9 3v47_A TOLL-like receptor 5B a 100.0 4.5E-29 1.5E-33 269.3 26.9 324 7-357 20-405 (455)
10 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-29 1.2E-33 275.0 23.6 330 1-344 5-461 (520)
11 3t6q_A CD180 antigen; protein- 100.0 1.8E-28 6E-33 274.5 29.6 248 86-357 274-533 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 1.3E-28 4.3E-33 273.4 24.5 354 2-363 34-509 (570)
13 4fmz_A Internalin; leucine ric 100.0 9.7E-28 3.3E-32 249.4 28.7 308 9-358 34-344 (347)
14 4fmz_A Internalin; leucine ric 100.0 1.1E-27 3.7E-32 249.0 27.8 296 1-337 49-344 (347)
15 3v47_A TOLL-like receptor 5B a 100.0 4.8E-28 1.7E-32 261.2 25.4 318 1-342 35-411 (455)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-28 9.4E-33 269.6 22.7 326 7-357 15-441 (549)
17 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-27 5E-32 267.0 28.1 343 7-358 21-484 (606)
18 2id5_A Lingo-1, leucine rich r 100.0 3.9E-27 1.3E-31 255.9 28.5 305 8-337 22-331 (477)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-27 9.3E-32 262.5 26.7 328 1-343 36-489 (562)
20 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-26 4.8E-31 268.7 32.3 341 7-355 14-409 (844)
21 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-27 7.3E-32 262.4 23.4 349 1-363 31-488 (549)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-27 9.4E-32 262.5 24.1 327 1-337 57-508 (562)
23 2id5_A Lingo-1, leucine rich r 100.0 1.2E-26 4.1E-31 252.0 27.8 307 22-358 14-331 (477)
24 1o6v_A Internalin A; bacterial 100.0 2.4E-26 8.3E-31 248.9 30.0 311 2-358 52-364 (466)
25 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-26 4E-31 269.3 29.1 171 1-172 29-215 (844)
26 2z7x_B TOLL-like receptor 1, v 99.9 5.4E-27 1.9E-31 257.5 22.9 309 22-364 3-437 (520)
27 2z63_A TOLL-like receptor 4, v 99.9 2.9E-26 1E-30 254.3 27.8 345 7-358 17-432 (570)
28 3o6n_A APL1; leucine-rich repe 99.9 3.9E-26 1.3E-30 241.4 27.3 302 17-357 43-349 (390)
29 3o6n_A APL1; leucine-rich repe 99.9 1.4E-26 4.9E-31 244.7 22.7 294 2-338 51-351 (390)
30 1ziw_A TOLL-like receptor 3; i 99.9 1E-25 3.5E-30 255.5 30.8 353 2-358 228-620 (680)
31 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-25 8.1E-30 252.6 33.1 239 2-243 10-283 (680)
32 1xku_A Decorin; proteoglycan, 99.9 2.1E-25 7.1E-30 230.3 29.5 283 20-336 32-329 (330)
33 3oja_B Anopheles plasmodium-re 99.9 9.1E-26 3.1E-30 251.9 27.0 301 17-357 49-355 (597)
34 1o6v_A Internalin A; bacterial 99.9 3.7E-25 1.3E-29 239.6 29.4 313 1-358 73-386 (466)
35 3oja_B Anopheles plasmodium-re 99.9 4.9E-26 1.7E-30 254.1 22.9 293 3-338 58-357 (597)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-25 6.6E-30 240.7 25.4 309 13-364 36-345 (457)
37 3bz5_A Internalin-J, INLJ; leu 99.9 3E-25 1E-29 239.2 25.5 293 21-364 20-324 (457)
38 2ft3_A Biglycan; proteoglycan, 99.9 3E-25 1E-29 229.3 24.3 284 20-337 34-331 (332)
39 1ogq_A PGIP-2, polygalacturona 99.9 3E-26 1E-30 234.9 16.6 252 66-343 50-308 (313)
40 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-24 4.2E-29 244.0 28.0 353 1-358 57-578 (635)
41 1jl5_A Outer protein YOPM; leu 99.9 1.3E-24 4.6E-29 233.9 24.0 324 1-364 16-353 (454)
42 4fcg_A Uncharacterized protein 99.9 8.9E-25 3E-29 225.3 20.8 175 66-243 81-264 (328)
43 1jl5_A Outer protein YOPM; leu 99.9 6.3E-24 2.1E-28 228.7 27.4 314 2-357 97-426 (454)
44 1ogq_A PGIP-2, polygalacturona 99.9 6.6E-25 2.3E-29 224.8 15.6 223 19-243 50-279 (313)
45 4fcg_A Uncharacterized protein 99.9 2.8E-24 9.4E-29 221.7 19.9 202 41-245 79-290 (328)
46 1xku_A Decorin; proteoglycan, 99.9 3.7E-23 1.2E-27 213.4 28.1 264 43-338 31-305 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-23 4.8E-28 216.7 23.0 262 43-337 33-305 (332)
48 4g8a_A TOLL-like receptor 4; l 99.9 8E-23 2.7E-27 229.2 28.6 346 7-358 41-553 (635)
49 2z66_A Variable lymphocyte rec 99.9 4.6E-22 1.6E-26 202.8 21.7 237 55-317 18-262 (306)
50 1ozn_A Reticulon 4 receptor; N 99.9 4.3E-22 1.5E-26 201.0 20.0 194 46-241 14-210 (285)
51 3g06_A SSPH2 (leucine-rich rep 99.9 3.2E-21 1.1E-25 214.3 28.3 257 20-339 41-297 (622)
52 2z66_A Variable lymphocyte rec 99.9 2.7E-22 9.2E-27 204.6 17.5 244 22-291 10-261 (306)
53 2z80_A TOLL-like receptor 2, v 99.9 1.6E-22 5.5E-27 210.7 15.4 175 44-243 32-209 (353)
54 1z7x_W Ribonuclease inhibitor; 99.9 2.1E-24 7.3E-29 233.0 -0.2 339 1-358 8-409 (461)
55 3g06_A SSPH2 (leucine-rich rep 99.9 6.7E-21 2.3E-25 211.7 27.7 263 1-326 45-308 (622)
56 2z80_A TOLL-like receptor 2, v 99.9 7.8E-22 2.7E-26 205.5 17.9 276 17-319 29-317 (353)
57 3zyj_A Leucine-rich repeat-con 99.9 5E-21 1.7E-25 205.5 24.1 215 23-242 47-265 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 5.9E-21 2E-25 205.7 24.5 217 22-243 57-277 (452)
59 3zyi_A Leucine-rich repeat-con 99.9 5.9E-21 2E-25 205.7 23.8 233 7-243 64-301 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-22 4.7E-27 208.0 9.8 241 66-342 34-278 (317)
61 3zyj_A Leucine-rich repeat-con 99.9 6.1E-21 2.1E-25 204.8 22.7 233 7-243 53-290 (440)
62 1wwl_A Monocyte differentiatio 99.9 2.5E-22 8.5E-27 205.6 7.6 245 16-316 40-309 (312)
63 1wwl_A Monocyte differentiatio 99.9 3.4E-22 1.1E-26 204.6 7.0 242 65-337 42-307 (312)
64 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-20 1.3E-24 186.5 21.7 218 22-243 14-236 (285)
65 3o53_A Protein LRIM1, AGAP0063 99.8 2E-21 6.9E-26 199.3 11.5 237 68-339 12-250 (317)
66 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-22 5E-27 218.5 -1.2 320 18-358 2-381 (461)
67 3oja_A Leucine-rich immune mol 99.8 1.9E-20 6.4E-25 203.4 13.7 238 67-340 35-276 (487)
68 3oja_A Leucine-rich immune mol 99.8 3.9E-20 1.3E-24 200.9 14.5 218 87-339 31-250 (487)
69 3ogk_B Coronatine-insensitive 99.8 9.2E-22 3.1E-26 219.2 -0.3 199 17-216 110-350 (592)
70 2z62_A TOLL-like receptor 4, v 99.8 1.2E-18 4.2E-23 174.6 20.9 210 8-220 18-236 (276)
71 2p1m_B Transport inhibitor res 99.8 2.5E-21 8.6E-26 215.7 0.4 343 15-359 62-493 (594)
72 2o6q_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 171.2 22.5 198 44-243 17-216 (270)
73 1p9a_G Platelet glycoprotein I 99.8 2.4E-18 8.2E-23 173.9 20.9 153 86-242 6-158 (290)
74 2z62_A TOLL-like receptor 4, v 99.8 2.9E-18 9.8E-23 172.0 21.0 215 55-316 18-237 (276)
75 3ogk_B Coronatine-insensitive 99.8 1.8E-20 6.3E-25 208.7 5.0 321 17-358 162-524 (592)
76 1p9a_G Platelet glycoprotein I 99.8 5.1E-18 1.8E-22 171.5 21.2 200 39-243 6-206 (290)
77 2ast_B S-phase kinase-associat 99.8 1.3E-19 4.6E-24 186.9 9.1 177 66-243 70-258 (336)
78 2ast_B S-phase kinase-associat 99.8 1.3E-19 4.5E-24 187.0 8.9 249 67-343 48-310 (336)
79 3rfs_A Internalin B, repeat mo 99.8 2.4E-18 8.1E-23 172.3 16.2 46 274-327 201-247 (272)
80 2p1m_B Transport inhibitor res 99.8 5.7E-21 2E-25 212.8 -3.3 220 22-242 46-324 (594)
81 3rfs_A Internalin B, repeat mo 99.8 2E-18 6.7E-23 172.9 14.4 211 12-232 34-246 (272)
82 2xwt_C Thyrotropin receptor; s 99.8 2.2E-18 7.7E-23 168.9 14.1 57 278-337 179-237 (239)
83 2o6q_A Variable lymphocyte rec 99.8 3E-17 1E-21 164.0 22.6 200 67-316 17-218 (270)
84 1h6u_A Internalin H; cell adhe 99.8 8.8E-18 3E-22 171.3 17.8 59 275-337 170-228 (308)
85 4glp_A Monocyte differentiatio 99.8 5.4E-18 1.9E-22 173.0 14.5 221 44-316 65-307 (310)
86 2xwt_C Thyrotropin receptor; s 99.8 9E-18 3.1E-22 164.6 15.3 194 44-243 32-237 (239)
87 1h6u_A Internalin H; cell adhe 99.8 1.4E-17 4.8E-22 169.8 17.2 193 39-244 37-229 (308)
88 2ca6_A RAN GTPase-activating p 99.7 9.7E-19 3.3E-23 184.3 5.0 83 161-243 159-255 (386)
89 2ca6_A RAN GTPase-activating p 99.7 8.1E-19 2.8E-23 184.9 4.3 231 15-245 28-316 (386)
90 3goz_A Leucine-rich repeat-con 99.7 5E-18 1.7E-22 177.2 7.6 247 72-337 4-295 (362)
91 4glp_A Monocyte differentiatio 99.7 4.6E-17 1.6E-21 166.1 14.6 222 17-244 62-306 (310)
92 4ay9_X Follicle-stimulating ho 99.7 1.6E-16 5.3E-21 165.1 18.1 207 31-243 20-234 (350)
93 3m19_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 153.9 19.0 174 44-219 15-190 (251)
94 4ay9_X Follicle-stimulating ho 99.7 2.6E-16 8.9E-21 163.4 17.8 233 69-354 12-253 (350)
95 3m19_A Variable lymphocyte rec 99.7 9.4E-16 3.2E-20 151.4 18.8 176 66-244 14-191 (251)
96 3goz_A Leucine-rich repeat-con 99.7 2.2E-17 7.5E-22 172.4 4.2 242 2-244 4-296 (362)
97 3cvr_A Invasion plasmid antige 99.6 3E-15 1E-19 164.4 19.0 193 67-327 60-255 (571)
98 3cvr_A Invasion plasmid antige 99.6 2E-15 7E-20 165.7 15.7 183 20-227 60-249 (571)
99 2o6s_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 142.7 14.5 177 48-233 12-190 (208)
100 4ezg_A Putative uncharacterize 99.6 1.7E-15 5.8E-20 143.7 10.9 149 40-193 41-190 (197)
101 1h6t_A Internalin B; cell adhe 99.6 5.6E-15 1.9E-19 149.2 14.8 172 39-221 42-213 (291)
102 2o6s_A Variable lymphocyte rec 99.6 8.1E-15 2.8E-19 140.2 15.1 124 95-220 12-136 (208)
103 1h6t_A Internalin B; cell adhe 99.6 1.3E-14 4.5E-19 146.5 16.8 168 64-243 44-211 (291)
104 1dce_A Protein (RAB geranylger 99.6 9E-18 3.1E-22 185.1 -7.8 208 87-332 346-566 (567)
105 1m9s_A Internalin B; cell inva 99.6 8.5E-15 2.9E-19 162.4 15.8 176 10-196 34-209 (605)
106 4ezg_A Putative uncharacterize 99.6 1.1E-14 3.9E-19 138.0 14.2 148 65-218 43-191 (197)
107 1m9s_A Internalin B; cell inva 99.6 1.8E-14 6.2E-19 159.7 15.0 171 39-220 39-209 (605)
108 2v9t_B SLIT homolog 2 protein 99.5 9E-14 3.1E-18 134.3 15.7 148 94-243 15-163 (220)
109 2xot_A Amphoterin-induced prot 99.5 5.4E-14 1.8E-18 146.5 14.6 148 46-195 21-174 (361)
110 3e6j_A Variable lymphocyte rec 99.5 2.5E-13 8.4E-18 132.0 16.7 149 46-220 22-171 (229)
111 1dce_A Protein (RAB geranylger 99.5 3.8E-16 1.3E-20 172.1 -4.1 210 15-239 345-567 (567)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 2.5E-13 8.5E-18 131.1 16.2 148 69-243 14-164 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 2.4E-13 8.3E-18 131.2 15.9 147 46-194 14-163 (220)
114 2v9t_B SLIT homolog 2 protein 99.5 2.8E-13 9.7E-18 130.7 16.1 144 47-193 15-161 (220)
115 1xeu_A Internalin C; cellular 99.5 3.8E-14 1.3E-18 140.9 10.0 165 18-218 18-182 (263)
116 3e6j_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 130.9 16.1 150 92-244 21-171 (229)
117 1xeu_A Internalin C; cellular 99.5 7.5E-14 2.6E-18 138.7 11.4 162 3-176 26-187 (263)
118 2xot_A Amphoterin-induced prot 99.4 3.8E-13 1.3E-17 140.1 12.9 172 68-243 20-200 (361)
119 4b8c_D Glucose-repressible alc 99.4 6.1E-14 2.1E-18 159.2 5.4 190 19-218 173-369 (727)
120 2ell_A Acidic leucine-rich nuc 99.4 6.8E-13 2.3E-17 122.2 10.9 81 66-147 24-105 (168)
121 4b8c_D Glucose-repressible alc 99.4 5E-14 1.7E-18 160.0 3.8 119 106-227 217-335 (727)
122 2je0_A Acidic leucine-rich nuc 99.4 7.7E-13 2.6E-17 119.2 10.8 126 66-192 17-148 (149)
123 2ell_A Acidic leucine-rich nuc 99.4 1.1E-12 3.7E-17 120.8 11.3 131 87-219 21-158 (168)
124 2je0_A Acidic leucine-rich nuc 99.4 1.3E-12 4.6E-17 117.6 10.4 127 88-216 15-148 (149)
125 1a9n_A U2A', U2A'; complex (nu 99.3 6.9E-12 2.4E-16 116.4 10.5 60 134-194 85-150 (176)
126 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.6E-16 116.2 12.5 124 93-219 11-137 (192)
127 1w8a_A SLIT protein; signaling 99.3 1.9E-11 6.4E-16 115.2 12.0 127 46-174 11-139 (192)
128 2wfh_A SLIT homolog 2 protein 99.3 3.3E-11 1.1E-15 113.6 13.6 104 91-194 32-136 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.2 2.2E-11 7.7E-16 112.9 10.1 128 87-218 16-150 (176)
130 2wfh_A SLIT homolog 2 protein 99.2 1E-10 3.4E-15 110.3 13.5 100 93-195 13-113 (193)
131 2o6r_A Variable lymphocyte rec 99.2 1.5E-10 5.1E-15 107.4 13.4 127 93-221 10-137 (177)
132 1ds9_A Outer arm dynein; leuci 99.2 5.3E-13 1.8E-17 126.5 -4.0 112 80-195 38-151 (198)
133 3sb4_A Hypothetical leucine ri 99.2 3E-11 1E-15 123.9 8.0 280 18-332 24-327 (329)
134 2o6r_A Variable lymphocyte rec 99.2 3E-10 1E-14 105.2 13.8 99 47-147 11-110 (177)
135 1ds9_A Outer arm dynein; leuci 99.1 2.2E-12 7.4E-17 122.3 -2.2 143 92-238 25-180 (198)
136 3sb4_A Hypothetical leucine ri 99.1 3.1E-10 1.1E-14 116.3 12.0 80 160-243 225-308 (329)
137 4fdw_A Leucine rich hypothetic 99.0 3.7E-08 1.3E-12 103.5 23.7 97 44-146 136-235 (401)
138 2r9u_A Variable lymphocyte rec 98.9 5.4E-09 1.8E-13 96.6 11.0 99 94-194 16-115 (174)
139 3g39_A Variable lymphocyte rec 98.9 6.1E-09 2.1E-13 95.8 11.3 100 93-194 12-112 (170)
140 3g39_A Variable lymphocyte rec 98.9 9.2E-09 3.1E-13 94.6 11.3 101 45-147 11-112 (170)
141 2r9u_A Variable lymphocyte rec 98.9 1.1E-08 3.8E-13 94.4 11.9 99 46-147 15-115 (174)
142 4fdw_A Leucine rich hypothetic 98.9 1E-07 3.5E-12 100.1 20.6 212 14-243 131-356 (401)
143 3un9_A NLR family member X1; l 98.8 1.5E-09 5.2E-14 113.0 1.6 83 161-243 155-250 (372)
144 3un9_A NLR family member X1; l 98.7 2.5E-09 8.7E-14 111.3 2.7 182 17-199 45-254 (372)
145 4fs7_A Uncharacterized protein 98.7 1.7E-06 5.8E-11 90.7 21.6 297 14-363 66-393 (394)
146 2ifg_A High affinity nerve gro 98.6 1.6E-07 5.5E-12 96.6 11.5 83 24-107 13-97 (347)
147 4fs7_A Uncharacterized protein 98.6 2.6E-06 8.7E-11 89.3 20.8 299 38-368 66-376 (394)
148 2ifg_A High affinity nerve gro 98.6 1.5E-07 5E-12 96.9 10.8 98 96-194 14-113 (347)
149 2ra8_A Uncharacterized protein 98.6 4.6E-08 1.6E-12 101.2 5.6 157 36-195 132-318 (362)
150 2ra8_A Uncharacterized protein 98.5 1.1E-07 3.7E-12 98.3 7.1 158 16-175 136-321 (362)
151 4h09_A Hypothetical leucine ri 98.4 0.00013 4.6E-09 75.5 26.3 127 11-146 38-167 (379)
152 4gt6_A Cell surface protein; l 98.2 4.9E-05 1.7E-09 79.5 19.4 124 179-333 260-385 (394)
153 4gt6_A Cell surface protein; l 98.2 0.0002 6.9E-09 74.7 23.7 302 15-365 59-385 (394)
154 4h09_A Hypothetical leucine ri 98.1 0.00051 1.8E-08 71.1 23.2 274 9-333 57-340 (379)
155 1io0_A Tropomodulin; LRR prote 97.8 1.6E-05 5.6E-10 73.7 5.6 13 206-218 149-161 (185)
156 1io0_A Tropomodulin; LRR prote 97.8 2.1E-05 7.1E-10 73.0 5.5 16 88-103 63-78 (185)
157 3e4g_A ATP synthase subunit S, 97.6 1.9E-05 6.5E-10 72.0 2.7 15 347-361 139-153 (176)
158 3e4g_A ATP synthase subunit S, 97.6 2.1E-05 7.1E-10 71.8 1.9 35 209-243 62-96 (176)
159 3rw6_A Nuclear RNA export fact 97.4 0.00015 5E-09 71.1 6.1 79 87-167 167-257 (267)
160 3rw6_A Nuclear RNA export fact 97.3 0.00028 9.6E-09 69.1 6.8 81 158-240 167-259 (267)
161 1pgv_A TMD-1, tropomodulin TMD 95.2 0.028 9.7E-07 51.9 6.3 38 87-124 67-109 (197)
162 1pgv_A TMD-1, tropomodulin TMD 94.3 0.057 1.9E-06 49.9 5.9 86 133-218 66-167 (197)
163 3rfe_A Platelet glycoprotein I 92.3 0.27 9.1E-06 42.1 6.7 43 58-102 24-67 (130)
164 3rfe_A Platelet glycoprotein I 90.7 0.39 1.3E-05 41.0 5.9 52 165-218 12-65 (130)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-32 Score=315.01 Aligned_cols=356 Identities=24% Similarity=0.217 Sum_probs=259.4
Q ss_pred CCCCCcCCccCCC-CCC-CCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-cC-CCCccEEEccCCc
Q 007219 2 SLKHSENLIRTPD-FSR-VPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGCL 77 (612)
Q Consensus 2 ~Ls~~~~L~~~p~-l~~-l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~ 77 (612)
+|++++-...+|+ +.. +++|++|++++|.....+|..++.+++|++|++++|.....+|.. +. +++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 4555542224553 333 366666666666555556666666666666666665443355543 22 5555555555554
Q ss_pred CCccc-------------------------CccccC--CCCCCeeecCCcCCc-ccccccccCCCCcEEeccCCCCCccc
Q 007219 78 KLKKF-------------------------PDIVGS--MECLQELHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERI 129 (612)
Q Consensus 78 ~l~~~-------------------------p~~~~~--l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~l 129 (612)
..+.+ |..+.. +++|++|++++|.+. .+|..+.++++|+.|++++|.....+
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 33334 433333 556777777777776 67778888889999999988877788
Q ss_pred ccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCC-CCChhhhccCCCcEEeecCCCCCCcccccccCCC
Q 007219 130 PSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIR-GLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLR 208 (612)
Q Consensus 130 p~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~ 208 (612)
|..+..+++|+.|++++|...+.+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..++.++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 888888999999999999887788888999999999999999988 5788899999999999999998889999999999
Q ss_pred CCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccC-ccccccccee----------------------------
Q 007219 209 SLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQST-SWFLHFPITL---------------------------- 259 (612)
Q Consensus 209 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~---------------------------- 259 (612)
+|+.|++++|...+.+|..++.+++|+.|++++|....... ..........
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 99999999999888999999999999999999886321111 1100000000
Q ss_pred ------------------cccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-ccc
Q 007219 260 ------------------IRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-SLP 319 (612)
Q Consensus 260 ------------------~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp 319 (612)
.....+......|. +..+++|+.|+|++|++. +.+|..++.+++|+.|+|++|.++ .+|
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 00000111122333 778899999999999985 789999999999999999999998 899
Q ss_pred hhhhccccccccccccccccccCCCC---CCCccEEeccCCC
Q 007219 320 ASIIHLSKLGKMVLEDCKRLQSLPQP---PPSIVSIRVDGCT 358 (612)
Q Consensus 320 ~~i~~L~~L~~L~l~~c~~L~~lp~l---p~sL~~L~i~~C~ 358 (612)
..+.++++|+.|++++|+.-..+|.. .++|+.|+++++.
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 99999999999999999887788753 3567777877764
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-32 Score=308.88 Aligned_cols=346 Identities=15% Similarity=0.177 Sum_probs=266.1
Q ss_pred CcCCccCCC-CCCCCCccEEeccCCCCccc-----------------cccccc--cCCCccEEecCCCCCCccCCCccC-
Q 007219 6 SENLIRTPD-FSRVPNLEQLILEGCTRLHE-----------------IHPSLL--VHKKLIFLNLKGCTSLRALPAKIF- 64 (612)
Q Consensus 6 ~~~L~~~p~-l~~l~~L~~L~L~~c~~l~~-----------------i~~si~--~l~~L~~L~L~~c~~l~~lp~~~~- 64 (612)
+.++..+|+ |+.+++|++|+|++|..... +|..++ .+++|++|++++|.....+|..+.
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 345666885 88999999999999875443 999999 999999999999988889998777
Q ss_pred CCCccEEEccCCc-CCc-ccCccccCC------CCCCeeecCCcCCccccc--ccccCCCCcEEeccCCCCCcccccccc
Q 007219 65 MKSLETLVLSGCL-KLK-KFPDIVGSM------ECLQELHLDGTDIKELPL--SIELLSGLVRLTLYGCKNFERIPSTIS 134 (612)
Q Consensus 65 l~~L~~L~L~~c~-~l~-~~p~~~~~l------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~l~ 134 (612)
+++|++|++++|. ... .+|..++++ ++|++|++++|.++.+|. .++++++|+.|++++|.....+| .+.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 9999999999998 555 688888776 999999999999999999 89999999999999988766888 799
Q ss_pred cCCCCCEEecCCCCCCccchhhhhcccc-ccEEEccCcCCCCCChhhhccC--CCcEEeecCCCCCCccccccc------
Q 007219 135 ALKYLSTLNLSGLWKLREFPEIVESMEQ-LLELHLEGTAIRGLPASIEFLS--GLVLLNLKDCKNLKSLPRTIN------ 205 (612)
Q Consensus 135 ~l~~L~~L~L~~~~~l~~~p~~l~~l~~-L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~c~~l~~lp~~i~------ 205 (612)
.+++|++|++++|... .+|..+..+++ |++|++++|.+..+|..+..+. +|+.|++++|...+.+|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 9999999999999544 88888999999 9999999999999998887755 899999999999988888888
Q ss_pred -CCCCCCEEEecCCCCCcccccc-cCCCCCCcEEeccCCCCCcccCcccccc--------cceecccCCCCccccCCC-C
Q 007219 206 -GLRSLKTLHLSGCSKLKNVPEN-LGKVESLEVLDISGCKGLLQSTSWFLHF--------PITLIRRNSDPVAWRFPS-L 274 (612)
Q Consensus 206 -~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~-l 274 (612)
.+++|+.|++++|... .+|.. +..+++|+.|++++|.....+...+... ....+....+... .+|. +
T Consensus 430 ~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 430 FKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred ccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 8889999999998776 56654 4568999999999987553222222211 1111222222222 3444 3
Q ss_pred C--CCCcccEEeccCCCCCCCCCCccccCcCCCCEEecc------CCCcc-ccchhhhccccccccccccccccccCCC-
Q 007219 275 S--GLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLS------RNSFV-SLPASIIHLSKLGKMVLEDCKRLQSLPQ- 344 (612)
Q Consensus 275 ~--~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls------~n~l~-~lp~~i~~L~~L~~L~l~~c~~L~~lp~- 344 (612)
. .+++|+.|+|++|++.. +|..+..+++|+.|+|+ +|++. .+|..+.++++|+.|++++|.. +.+|.
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp STTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 3 66677777777776643 66666677777777773 34443 6666677777777777776655 66664
Q ss_pred CCCCccEEeccCCC
Q 007219 345 PPPSIVSIRVDGCT 358 (612)
Q Consensus 345 lp~sL~~L~i~~C~ 358 (612)
+.++|+.|++++++
T Consensus 585 ~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 585 ITPNISVLDIKDNP 598 (636)
T ss_dssp CCTTCCEEECCSCT
T ss_pred HhCcCCEEECcCCC
Confidence 45666666666664
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.9e-32 Score=303.43 Aligned_cols=323 Identities=17% Similarity=0.195 Sum_probs=268.2
Q ss_pred ccccccccCCCccEEecCCCCCCcc------------------CCCccC---CCCccEEEccCCcCCcccCccccCCCCC
Q 007219 34 EIHPSLLVHKKLIFLNLKGCTSLRA------------------LPAKIF---MKSLETLVLSGCLKLKKFPDIVGSMECL 92 (612)
Q Consensus 34 ~i~~si~~l~~L~~L~L~~c~~l~~------------------lp~~~~---l~~L~~L~L~~c~~l~~~p~~~~~l~~L 92 (612)
.+|..++.+++|++|+|++|. ++. +|..+. +++|++|++++|...+.+|..++++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 488889999999999999976 555 898776 8999999999999899999999999999
Q ss_pred CeeecCCcC-Cc--ccccccccC------CCCcEEeccCCCCCccccc--ccccCCCCCEEecCCCCCCccchhhhhccc
Q 007219 93 QELHLDGTD-IK--ELPLSIELL------SGLVRLTLYGCKNFERIPS--TISALKYLSTLNLSGLWKLREFPEIVESME 161 (612)
Q Consensus 93 ~~L~L~~~~-i~--~lp~~i~~l------~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~ 161 (612)
++|++++|. ++ .+|..++.+ ++|++|++++|... .+|. .++.+++|++|++++|...+.+| .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 88 499988887 99999999998765 8998 89999999999999997776889 899999
Q ss_pred cccEEEccCcCCCCCChhhhccCC-CcEEeecCCCCCCcccccccCCC--CCCEEEecCCCCCcccccccC-------CC
Q 007219 162 QLLELHLEGTAIRGLPASIEFLSG-LVLLNLKDCKNLKSLPRTINGLR--SLKTLHLSGCSKLKNVPENLG-------KV 231 (612)
Q Consensus 162 ~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~i~~l~--~L~~L~Ls~c~~l~~lp~~l~-------~l 231 (612)
+|++|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++ +|+.|++++|...+.+|..++ .+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 999999999999999999999999 999999999866 8898887755 999999999999999998888 88
Q ss_pred CCCcEEeccCCCCCcccCcccccccce-ecccCCCCccccCCC--C-------CCCCcccEEeccCCCCCCCCCCcccc-
Q 007219 232 ESLEVLDISGCKGLLQSTSWFLHFPIT-LIRRNSDPVAWRFPS--L-------SGLYCLRKLDISDCNLGEGAIPSDIG- 300 (612)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~--l-------~~l~~L~~L~Ls~~~l~~~~ip~~l~- 300 (612)
++|+.|++++|.....+...+...+.+ .+....+... .+|. + .++++|+.|+|++|++. .+|..+.
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~ 509 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRA 509 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGST
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhh
Confidence 899999999997553232222222221 2222223222 4444 2 22349999999999996 5888887
Q ss_pred -CcCCCCEEeccCCCccccchhhhcccccccccccc------ccccccCCCC---CCCccEEeccCCCCcceec
Q 007219 301 -HLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLED------CKRLQSLPQP---PPSIVSIRVDGCTSLETIS 364 (612)
Q Consensus 301 -~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~------c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~ 364 (612)
.+++|+.|+|++|.++.+|..+.++++|+.|++++ +.....+|.. .++|+.|++++|.- +.++
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 89999999999999999999999999999999965 4445566642 46788899888764 6665
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.2e-32 Score=311.94 Aligned_cols=345 Identities=21% Similarity=0.215 Sum_probs=265.0
Q ss_pred CCCCCCccEEeccCCCCccccccccccCC-CccEEecCCCCCCccCCCccC---CCCccEEEccCCcCCcccCccccCCC
Q 007219 15 FSRVPNLEQLILEGCTRLHEIHPSLLVHK-KLIFLNLKGCTSLRALPAKIF---MKSLETLVLSGCLKLKKFPDIVGSME 90 (612)
Q Consensus 15 l~~l~~L~~L~L~~c~~l~~i~~si~~l~-~L~~L~L~~c~~l~~lp~~~~---l~~L~~L~L~~c~~l~~~p~~~~~l~ 90 (612)
|..+++|++|++++|.....+|..++.++ +|++|++++|.....+|..+. +++|++|++++|...+.+|..+++++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 44445555555554443334444444444 555555555443333444333 56788899988887778999999999
Q ss_pred CCCeeecCCcCCc-ccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEcc
Q 007219 91 CLQELHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLE 169 (612)
Q Consensus 91 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~ 169 (612)
+|++|++++|.+. .+|..++.+++|+.|++++|.....+|..+..+++|++|++++|...+.+|..+..+++|++|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 9999999999998 788999999999999999999888999999999999999999998888999999999999999999
Q ss_pred CcCCC-CCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCC----
Q 007219 170 GTAIR-GLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKG---- 244 (612)
Q Consensus 170 ~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~---- 244 (612)
+|.+. .+|.+++.+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+.....+..+.+.....
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 99999 6899999999999999999999999999999999999999999999988888776655444333222100
Q ss_pred ----C----------------cc----------------------cCccccccc-ceecccCCCCccccCCC-CCCCCcc
Q 007219 245 ----L----------------LQ----------------------STSWFLHFP-ITLIRRNSDPVAWRFPS-LSGLYCL 280 (612)
Q Consensus 245 ----~----------------~~----------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~-l~~l~~L 280 (612)
. .. ....+.... ...+....+.....+|. ++.+++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 0 00 000000011 11233344444455665 8899999
Q ss_pred cEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-ccchhhhccccccccccccccccccCCCC--CCCccEEeccCC
Q 007219 281 RKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-SLPASIIHLSKLGKMVLEDCKRLQSLPQP--PPSIVSIRVDGC 357 (612)
Q Consensus 281 ~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~L~~L~~L~l~~c~~L~~lp~l--p~sL~~L~i~~C 357 (612)
+.|+|++|.+. +.+|..++.+++|+.|+|++|+++ .+|..+..+++|++|++++|+.-..+|.. +.++....+.|+
T Consensus 659 ~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 659 FILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737 (768)
T ss_dssp CEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSC
T ss_pred CEEeCcCCccC-CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCC
Confidence 99999999995 789999999999999999999999 89999999999999999999888888864 233433444455
Q ss_pred CCc
Q 007219 358 TSL 360 (612)
Q Consensus 358 ~~L 360 (612)
+.|
T Consensus 738 ~~L 740 (768)
T 3rgz_A 738 PGL 740 (768)
T ss_dssp TEE
T ss_pred chh
Confidence 544
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.2e-31 Score=301.77 Aligned_cols=343 Identities=14% Similarity=0.132 Sum_probs=250.2
Q ss_pred CCccCC-CCCCCCCccEEeccCCCCcc-----------------ccccccc--cCCCccEEecCCCCCCccCCCccC-CC
Q 007219 8 NLIRTP-DFSRVPNLEQLILEGCTRLH-----------------EIHPSLL--VHKKLIFLNLKGCTSLRALPAKIF-MK 66 (612)
Q Consensus 8 ~L~~~p-~l~~l~~L~~L~L~~c~~l~-----------------~i~~si~--~l~~L~~L~L~~c~~l~~lp~~~~-l~ 66 (612)
++..+| .|+.+++|+.|+|++|.... .+|..++ .+++|++|+|++|.....+|..+. ++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 455577 48899999999999977554 2888888 999999999999988889998777 99
Q ss_pred CccEEEccCCc-CCc-ccCccccCCC-------CCCeeecCCcCCccccc--ccccCCCCcEEeccCCCCCccccccccc
Q 007219 67 SLETLVLSGCL-KLK-KFPDIVGSME-------CLQELHLDGTDIKELPL--SIELLSGLVRLTLYGCKNFERIPSTISA 135 (612)
Q Consensus 67 ~L~~L~L~~c~-~l~-~~p~~~~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~l~~ 135 (612)
+|++|+|++|. ... .+|..++++. +|++|++++|.+..+|. .++++++|+.|++++|... .+| .+..
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~ 593 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT 593 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC
Confidence 99999999997 444 6887666555 99999999999999998 8999999999999998765 888 7899
Q ss_pred CCCCCEEecCCCCCCccchhhhhcccc-ccEEEccCcCCCCCChhhhccCC--CcEEeecCCCCCCcccc---ccc--CC
Q 007219 136 LKYLSTLNLSGLWKLREFPEIVESMEQ-LLELHLEGTAIRGLPASIEFLSG--LVLLNLKDCKNLKSLPR---TIN--GL 207 (612)
Q Consensus 136 l~~L~~L~L~~~~~l~~~p~~l~~l~~-L~~L~L~~~~i~~lp~~i~~l~~--L~~L~L~~c~~l~~lp~---~i~--~l 207 (612)
+++|+.|++++|... .+|..+..+++ |++|++++|.+..+|..+..++. |+.|++++|...+.+|. .+. .+
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 999999999999655 88988999999 99999999999999988877654 99999999988766553 233 34
Q ss_pred CCCCEEEecCCCCCccccccc-CCCCCCcEEeccCCCCCcccCcccccc--------cceecccCCCCccccCCC-CC--
Q 007219 208 RSLKTLHLSGCSKLKNVPENL-GKVESLEVLDISGCKGLLQSTSWFLHF--------PITLIRRNSDPVAWRFPS-LS-- 275 (612)
Q Consensus 208 ~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~-l~-- 275 (612)
++|+.|++++|... .+|..+ ..+++|+.|++++|.....+...+... ....+....+... .+|. +.
T Consensus 673 ~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 58999999998766 667655 478999999999987443222111111 1111111222222 3343 33
Q ss_pred CCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccC------CCcc-ccchhhhccccccccccccccccccCCC-CCC
Q 007219 276 GLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSR------NSFV-SLPASIIHLSKLGKMVLEDCKRLQSLPQ-PPP 347 (612)
Q Consensus 276 ~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~------n~l~-~lp~~i~~L~~L~~L~l~~c~~L~~lp~-lp~ 347 (612)
.+++|+.|+|++|++.. +|..+..+++|+.|+|++ |++. .+|..+.++++|+.|++++|.. ..+|. +++
T Consensus 751 ~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~ 827 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTP 827 (876)
T ss_dssp TCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCS
T ss_pred cCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcC
Confidence 56666666666666643 566666666666666654 4433 5566666666666666666644 55554 445
Q ss_pred CccEEeccCCC
Q 007219 348 SIVSIRVDGCT 358 (612)
Q Consensus 348 sL~~L~i~~C~ 358 (612)
+|+.|++++|+
T Consensus 828 ~L~~LdLs~N~ 838 (876)
T 4ecn_A 828 QLYILDIADNP 838 (876)
T ss_dssp SSCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 66666666655
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.3e-30 Score=294.04 Aligned_cols=321 Identities=16% Similarity=0.197 Sum_probs=254.2
Q ss_pred cccccccCCCccEEecCCCCCCcc------------------CCCccC---CCCccEEEccCCcCCcccCccccCCCCCC
Q 007219 35 IHPSLLVHKKLIFLNLKGCTSLRA------------------LPAKIF---MKSLETLVLSGCLKLKKFPDIVGSMECLQ 93 (612)
Q Consensus 35 i~~si~~l~~L~~L~L~~c~~l~~------------------lp~~~~---l~~L~~L~L~~c~~l~~~p~~~~~l~~L~ 93 (612)
+|.+++.+++|++|+|++|. +.. +|..+. +++|++|+|++|...+.+|..++++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 78889999999999999975 444 888774 89999999999988889999999999999
Q ss_pred eeecCCcC-Ccc--cccccccCC-------CCcEEeccCCCCCccccc--ccccCCCCCEEecCCCCCCccchhhhhccc
Q 007219 94 ELHLDGTD-IKE--LPLSIELLS-------GLVRLTLYGCKNFERIPS--TISALKYLSTLNLSGLWKLREFPEIVESME 161 (612)
Q Consensus 94 ~L~L~~~~-i~~--lp~~i~~l~-------~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~ 161 (612)
+|+|++|. ++. +|..++.+. +|+.|++++|... .+|. .+..+++|+.|++++|... .+| .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 99999998 874 888777665 9999999998765 8888 8999999999999999655 888 888999
Q ss_pred cccEEEccCcCCCCCChhhhccCC-CcEEeecCCCCCCcccccccCCCC--CCEEEecCCCCCccccc---ccC--CCCC
Q 007219 162 QLLELHLEGTAIRGLPASIEFLSG-LVLLNLKDCKNLKSLPRTINGLRS--LKTLHLSGCSKLKNVPE---NLG--KVES 233 (612)
Q Consensus 162 ~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~i~~l~~--L~~L~Ls~c~~l~~lp~---~l~--~l~~ 233 (612)
+|++|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|...+.+|. .++ .+++
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999999999999999998 999999999855 88888877654 99999999988776553 233 3458
Q ss_pred CcEEeccCCCCCcccCcccccccce-ecccCCCCccccCCC---------CCCCCcccEEeccCCCCCCCCCCcccc--C
Q 007219 234 LEVLDISGCKGLLQSTSWFLHFPIT-LIRRNSDPVAWRFPS---------LSGLYCLRKLDISDCNLGEGAIPSDIG--H 301 (612)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~---------l~~l~~L~~L~Ls~~~l~~~~ip~~l~--~ 301 (612)
|+.|++++|.....+...+...+.+ .+....+... .+|. +.++++|+.|+|++|++. .+|..+. .
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhcc
Confidence 9999999987553222222122221 1222222222 3443 223459999999999996 5898887 8
Q ss_pred cCCCCEEeccCCCccccchhhhcccccccccccc------ccccccCCCC---CCCccEEeccCCCCcceec
Q 007219 302 LCSLKELYLSRNSFVSLPASIIHLSKLGKMVLED------CKRLQSLPQP---PPSIVSIRVDGCTSLETIS 364 (612)
Q Consensus 302 l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~------c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~ 364 (612)
+++|+.|+|++|.++.+|..+..+++|+.|++++ |.....+|.. .++|+.|++++|.- ..++
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 9999999999999999999999999999999987 4445556642 46889999988854 6665
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4.1e-29 Score=279.63 Aligned_cols=355 Identities=19% Similarity=0.127 Sum_probs=206.8
Q ss_pred CCCCCCcCCccCC--CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCc
Q 007219 1 MSLKHSENLIRTP--DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCL 77 (612)
Q Consensus 1 l~Ls~~~~L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~ 77 (612)
|||++++ +..++ +|+++++|++|+|++|......|..++.+++|++|++++|......|..+. +++|++|++++|.
T Consensus 38 L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 38 LEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp EECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred EEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence 3566553 44543 477777777777777655544566677777777777777654444454444 7777777777776
Q ss_pred CCcccCccccCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCcccccccccCCCCC--EEecCCCCCCccch
Q 007219 78 KLKKFPDIVGSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFERIPSTISALKYLS--TLNLSGLWKLREFP 154 (612)
Q Consensus 78 ~l~~~p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~--~L~L~~~~~l~~~p 154 (612)
.....|..++++++|++|++++|.+..++ ..+..+++|++|++++|......|..+..+++|+ .|++++|......|
T Consensus 117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 44444566777777777777777777652 2233477777777777765544455566666666 66666664333222
Q ss_pred hhhhc-------------------------------------------------cc--cccEEEccCcCCCCCCh-hhhc
Q 007219 155 EIVES-------------------------------------------------ME--QLLELHLEGTAIRGLPA-SIEF 182 (612)
Q Consensus 155 ~~l~~-------------------------------------------------l~--~L~~L~L~~~~i~~lp~-~i~~ 182 (612)
..+.. +. +|++|+++++.+..++. .++.
T Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 276 (606)
T 3t6q_A 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276 (606)
T ss_dssp TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT
T ss_pred hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcc
Confidence 21110 00 44555555555555443 2566
Q ss_pred cCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcc-cCcccccccce-ec
Q 007219 183 LSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQ-STSWFLHFPIT-LI 260 (612)
Q Consensus 183 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~-~~ 260 (612)
+++|+.|++++|.. ..+|..+..+++|++|++++|...+..|..++.+++|+.|++++|..... ....+...+.+ ..
T Consensus 277 l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 66777777776643 36666666677777777777666655566666667777777766653211 11111111111 11
Q ss_pred ccCCCCcccc---CCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcccc-c-hhhhcccccccccccc
Q 007219 261 RRNSDPVAWR---FPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSL-P-ASIIHLSKLGKMVLED 335 (612)
Q Consensus 261 ~~~~~~~~~~---l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~l-p-~~i~~L~~L~~L~l~~ 335 (612)
....+..... ...+..+++|+.|++++|.+. +..|..+..+++|++|++++|.+... | ..+..+++|+.|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 1111111111 112666777777777777663 34456666777777777777776633 2 3366777777777777
Q ss_pred ccccccCCCC---CCCccEEeccCCC
Q 007219 336 CKRLQSLPQP---PPSIVSIRVDGCT 358 (612)
Q Consensus 336 c~~L~~lp~l---p~sL~~L~i~~C~ 358 (612)
|..-...|.. .++|+.|++.+|.
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCC
Confidence 6544433322 4567777776664
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.7e-29 Score=281.10 Aligned_cols=351 Identities=19% Similarity=0.162 Sum_probs=203.6
Q ss_pred CCCCCCcCCccCC--CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccC-CCccC-CCCccEEEccCC
Q 007219 1 MSLKHSENLIRTP--DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRAL-PAKIF-MKSLETLVLSGC 76 (612)
Q Consensus 1 l~Ls~~~~L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~l-p~~~~-l~~L~~L~L~~c 76 (612)
|||++++ +..+| .|+++++|++|++++|......+..++.+++|++|++++|. +..+ |..+. +++|++|++++|
T Consensus 37 L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 37 IDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred EECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence 3566553 45544 47777777777777764433335567777777777777754 3344 55454 777777777777
Q ss_pred cCCcccCccccCCCCCCeeecCCcCCc--ccccccccCCCCcEEeccCCCCCcccccc----------------------
Q 007219 77 LKLKKFPDIVGSMECLQELHLDGTDIK--ELPLSIELLSGLVRLTLYGCKNFERIPST---------------------- 132 (612)
Q Consensus 77 ~~l~~~p~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~---------------------- 132 (612)
......+..++++++|++|++++|.+. .+|..++++++|++|++++|......|..
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc
Confidence 644444455677777777777777776 35666777777777777665432211111
Q ss_pred --------------------------------------------------------------------------------
Q 007219 133 -------------------------------------------------------------------------------- 132 (612)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (612)
T Consensus 195 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 274 (606)
T 3vq2_A 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274 (606)
T ss_dssp EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTC
T ss_pred eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccc
Confidence
Q ss_pred ----------------------------cccCCCCCEEecCCCCCCccchh--------------------hhhcccccc
Q 007219 133 ----------------------------ISALKYLSTLNLSGLWKLREFPE--------------------IVESMEQLL 164 (612)
Q Consensus 133 ----------------------------l~~l~~L~~L~L~~~~~l~~~p~--------------------~l~~l~~L~ 164 (612)
+..+++|++|++++|.. +.+|. .+..+++|+
T Consensus 275 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp CGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred cccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCC
Confidence 11122333333333322 22221 233566778
Q ss_pred EEEccCcCCCCC---ChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccc-cccCCCCCCcEEecc
Q 007219 165 ELHLEGTAIRGL---PASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVP-ENLGKVESLEVLDIS 240 (612)
Q Consensus 165 ~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~ 240 (612)
+|++++|.+..+ |..+..+++|+.|++++|. +..+|..+..+++|+.|++++|...+..| ..++.+++|+.|+++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 888888887765 7888899999999999887 44577888889999999999988777776 678889999999999
Q ss_pred CCCCCcccCcccccccce-ecccCCCCccc-cCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccc
Q 007219 241 GCKGLLQSTSWFLHFPIT-LIRRNSDPVAW-RFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVS 317 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~ 317 (612)
+|.........+...+.+ ......+.... .+|. +..+++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.
T Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCC
Confidence 887433211111111111 11111111111 1222 445555555555555553 2334445555555555555555553
Q ss_pred c-chhhhccccccccccccccccccCCC----CCCCccEEeccCC
Q 007219 318 L-PASIIHLSKLGKMVLEDCKRLQSLPQ----PPPSIVSIRVDGC 357 (612)
Q Consensus 318 l-p~~i~~L~~L~~L~l~~c~~L~~lp~----lp~sL~~L~i~~C 357 (612)
+ |..+..+++|+.|++++|+ ++.+|. +|.+|+.|++.++
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred cCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 3 4455555555555555553 334432 2234444444443
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=4.5e-29 Score=269.34 Aligned_cols=324 Identities=19% Similarity=0.150 Sum_probs=244.4
Q ss_pred cCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-cC-CCCccEEEccCCcCCcccCc
Q 007219 7 ENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 7 ~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
.+++.+|.+ .++|++|+|++|......+..++.+++|++|++++|.....++.. +. +++|++|+|++|......|.
T Consensus 20 ~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 20 RGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp SCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh
Confidence 368889983 388999999997665555778999999999999998766566553 33 99999999999987777788
Q ss_pred cccCCCCCCeeecCCcCCcc-cccc--cccCCCCcEEeccCCCCCcccccc-cccCCCCCEEecCCCCCCccchhhhhcc
Q 007219 85 IVGSMECLQELHLDGTDIKE-LPLS--IELLSGLVRLTLYGCKNFERIPST-ISALKYLSTLNLSGLWKLREFPEIVESM 160 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~~p~~l~~l 160 (612)
.++++++|++|++++|.++. +|.. ++.+++|++|++++|......|.. +..+++|++|++++|......+..+..+
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 99999999999999999985 4544 889999999999999876666766 7899999999999998777777777666
Q ss_pred --ccccEEEccCcCCCCCChh---------hhccCCCcEEeecCCCCCCccccccc------------------------
Q 007219 161 --EQLLELHLEGTAIRGLPAS---------IEFLSGLVLLNLKDCKNLKSLPRTIN------------------------ 205 (612)
Q Consensus 161 --~~L~~L~L~~~~i~~lp~~---------i~~l~~L~~L~L~~c~~l~~lp~~i~------------------------ 205 (612)
.+|+.|+++++.+..++.. +..+++|+.|++++|......|..+.
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 6777777777777765432 23456777777777765544433322
Q ss_pred ---------------CCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCcccc
Q 007219 206 ---------------GLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWR 270 (612)
Q Consensus 206 ---------------~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (612)
..++|+.|++++|...+..|..++.+++|+.|++++|.... .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------------~ 314 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-----------------------I 314 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-----------------------E
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-----------------------c
Confidence 12577777777777777777777778888888887776322 1
Q ss_pred CC-CCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcccc-chhhhccccccccccccccccccCCC----
Q 007219 271 FP-SLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSL-PASIIHLSKLGKMVLEDCKRLQSLPQ---- 344 (612)
Q Consensus 271 l~-~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~L~~L~~L~l~~c~~L~~lp~---- 344 (612)
.| .+..+++|+.|+|++|.+. +..|..+..+++|++|+|++|.++.+ |..+..+++|++|++++|. ++.+|.
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 392 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFD 392 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred ChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhc
Confidence 12 2667888999999988884 44567778888999999999988865 6678888899999998864 444543
Q ss_pred CCCCccEEeccCC
Q 007219 345 PPPSIVSIRVDGC 357 (612)
Q Consensus 345 lp~sL~~L~i~~C 357 (612)
-.++|+.|+++++
T Consensus 393 ~l~~L~~L~l~~N 405 (455)
T 3v47_A 393 RLTSLQKIWLHTN 405 (455)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCcccEEEccCC
Confidence 1245555555544
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=275.04 Aligned_cols=330 Identities=18% Similarity=0.111 Sum_probs=194.4
Q ss_pred CCCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCC
Q 007219 1 MSLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKL 79 (612)
Q Consensus 1 l~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l 79 (612)
||++++ +++.+|.--. ++|++|++++|......+..+..+++|++|++++|......|..+. +++|++|+|++|. +
T Consensus 5 l~ls~n-~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l 81 (520)
T 2z7x_B 5 VDRSKN-GLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-L 81 (520)
T ss_dssp EECTTS-CCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-C
T ss_pred EecCCC-Cccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-e
Confidence 466665 4667775211 6777777777654433345677777777777777543322344444 7777777777765 4
Q ss_pred cccCccccCCCCCCeeecCCcCCcc--cccccccCCCCcEEeccCCCCCcccccccccCCCC--CEEecCCCCC--Cccc
Q 007219 80 KKFPDIVGSMECLQELHLDGTDIKE--LPLSIELLSGLVRLTLYGCKNFERIPSTISALKYL--STLNLSGLWK--LREF 153 (612)
Q Consensus 80 ~~~p~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L--~~L~L~~~~~--l~~~ 153 (612)
+.+|.. .+++|++|++++|.++. +|..++.+++|++|++++|.... ..+..+++| ++|++++|.. ....
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccc
Confidence 456654 67777777777777764 45677777777777777765432 123344444 5555554433 1222
Q ss_pred hhhhhc--------------------------------------------------------------------------
Q 007219 154 PEIVES-------------------------------------------------------------------------- 159 (612)
Q Consensus 154 p~~l~~-------------------------------------------------------------------------- 159 (612)
|..+..
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 221111
Q ss_pred ---------cccccEEEccCcCCC-CCChhh-----hccCCCcEEeecCCCCCCcccc----------------------
Q 007219 160 ---------MEQLLELHLEGTAIR-GLPASI-----EFLSGLVLLNLKDCKNLKSLPR---------------------- 202 (612)
Q Consensus 160 ---------l~~L~~L~L~~~~i~-~lp~~i-----~~l~~L~~L~L~~c~~l~~lp~---------------------- 202 (612)
+++|++|++++|.+. .+|..+ +.+++|+.+++.+|.. .+|.
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc
Confidence 125666666666666 566655 5555555555555443 2220
Q ss_pred ---c-ccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCccc--Ccccccccc-eecccCCCCccccCC--C
Q 007219 203 ---T-INGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQS--TSWFLHFPI-TLIRRNSDPVAWRFP--S 273 (612)
Q Consensus 203 ---~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~--~ 273 (612)
. ...+++|++|++++|...+.+|..++.+++|+.|++++|...... ...+...+. .......+.....+| .
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 0 156778888888888777777777888888888888877643210 011111111 111222222222233 2
Q ss_pred CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhccccccccccccccccccCCC
Q 007219 274 LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQ 344 (612)
Q Consensus 274 l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~ 344 (612)
+..+++|+.|++++|.+. +.+|..+. ++|+.|+|++|+++.+|..+..+++|++|++++| .++.+|.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILT-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp CCCCTTCCEEECCSSCCC-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCT
T ss_pred hccCccCCEEECcCCCCC-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCH
Confidence 566777888888888774 34444433 6788888888888888877778888888888877 3445554
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.8e-28 Score=274.49 Aligned_cols=248 Identities=23% Similarity=0.224 Sum_probs=131.4
Q ss_pred ccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchh-hhhcccccc
Q 007219 86 VGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPE-IVESMEQLL 164 (612)
Q Consensus 86 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~-~l~~l~~L~ 164 (612)
++++++|++|++++|.++++|..+..+++|++|++++|......|..+..+++|++|++++|.....+|. .+..+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 4445555555555555555555555555555555555544333344455555555555555544333332 244555555
Q ss_pred EEEccCcCCCCC---ChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCccccc-ccCCCCCCcEEecc
Q 007219 165 ELHLEGTAIRGL---PASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPE-NLGKVESLEVLDIS 240 (612)
Q Consensus 165 ~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~l~ 240 (612)
+|++++|.+..+ +..+..+++|+.|++++|......|..+..+++|+.|++++|...+..+. .++.+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 555555555443 34445555555555555544444444455555555555555544433332 24455555555555
Q ss_pred CCCCCcccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCC--ccccCcCCCCEEeccCCCccc
Q 007219 241 GCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIP--SDIGHLCSLKELYLSRNSFVS 317 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip--~~l~~l~sL~~L~Ls~n~l~~ 317 (612)
+|... ...|. +..+++|++|++++|.+.+..++ ..+..+++|++|+|++|.++.
T Consensus 434 ~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 434 HSLLD-----------------------ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp TCCCB-----------------------TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCccC-----------------------CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 54422 12222 56677777777777776532222 456667777777777777774
Q ss_pred c-chhhhccccccccccccccccccCCCC---CCCccEEeccCC
Q 007219 318 L-PASIIHLSKLGKMVLEDCKRLQSLPQP---PPSIVSIRVDGC 357 (612)
Q Consensus 318 l-p~~i~~L~~L~~L~l~~c~~L~~lp~l---p~sL~~L~i~~C 357 (612)
+ |..+..+++|+.|++++|+.....|.. .++| .|++.++
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 4 456777777777777777544433322 2344 6666655
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=273.41 Aligned_cols=354 Identities=23% Similarity=0.210 Sum_probs=204.3
Q ss_pred CCCCCcCCccCC--CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCC-CccC-CCCccEEEccCCc
Q 007219 2 SLKHSENLIRTP--DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALP-AKIF-MKSLETLVLSGCL 77 (612)
Q Consensus 2 ~Ls~~~~L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~c~ 77 (612)
||++++ +..++ +|+++++|++|++++|......+..++.+++|++|++++|. +..+| ..+. +++|++|++++|.
T Consensus 34 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 34 DLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp ECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred EccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccc
Confidence 445442 44433 45566666666666653222223345566666666666643 33333 2232 5666666666654
Q ss_pred CCcccC-ccccCCCCCCeeecCCcCCcc--cccccccCCCCcEEeccCCCCCcccccccccCCCC----CEEecCCCCCC
Q 007219 78 KLKKFP-DIVGSMECLQELHLDGTDIKE--LPLSIELLSGLVRLTLYGCKNFERIPSTISALKYL----STLNLSGLWKL 150 (612)
Q Consensus 78 ~l~~~p-~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L----~~L~L~~~~~l 150 (612)
+..++ ..++++++|++|++++|.++. +|..++++++|++|++++|......+..++.+++| +.|++++|...
T Consensus 112 -l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 112 -LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp -CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred -cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence 33333 245566666666666666653 45566666666666666654433333333333333 33443333211
Q ss_pred --------------------------------------------------------------------------------
Q 007219 151 -------------------------------------------------------------------------------- 150 (612)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (612)
T Consensus 191 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp EECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred ecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence
Q ss_pred -ccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCccccc--------------------ccCCCC
Q 007219 151 -REFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRT--------------------INGLRS 209 (612)
Q Consensus 151 -~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--------------------i~~l~~ 209 (612)
...|..+..+++|++|+++++.+.++|..+..+ +|+.|++.+|... .+|.. ...+++
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred hhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCC
Confidence 112233444566667777666666666666555 5666666555433 22221 146788
Q ss_pred CCEEEecCCCCCccc--ccccCCCCCCcEEeccCCCCCcccCcccccccce-ecccCCCCccccCC--CCCCCCcccEEe
Q 007219 210 LKTLHLSGCSKLKNV--PENLGKVESLEVLDISGCKGLLQSTSWFLHFPIT-LIRRNSDPVAWRFP--SLSGLYCLRKLD 284 (612)
Q Consensus 210 L~~L~Ls~c~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~--~l~~l~~L~~L~ 284 (612)
|+.|++++|...... +..+..+++|+.|++++|........ +...+.+ ......+......+ .+..+++|+.|+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 888888888765443 66677888999999988864332211 1122211 11222222222222 367888899999
Q ss_pred ccCCCCCCCCCCccccCcCCCCEEeccCCCcc--ccchhhhccccccccccccccccccCCCC---CCCccEEeccCCCC
Q 007219 285 ISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV--SLPASIIHLSKLGKMVLEDCKRLQSLPQP---PPSIVSIRVDGCTS 359 (612)
Q Consensus 285 Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~--~lp~~i~~L~~L~~L~l~~c~~L~~lp~l---p~sL~~L~i~~C~~ 359 (612)
+++|.+. +..|..+..+++|++|+|++|.+. .+|..+..+++|+.|++++|..-...|.. .++|+.|++.+| .
T Consensus 428 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~ 505 (570)
T 2z63_A 428 ISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-Q 505 (570)
T ss_dssp CTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred CcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-c
Confidence 9998874 456777888899999999999886 58888888999999999888655444432 367888888877 3
Q ss_pred ccee
Q 007219 360 LETI 363 (612)
Q Consensus 360 L~~l 363 (612)
++.+
T Consensus 506 l~~~ 509 (570)
T 2z63_A 506 LKSV 509 (570)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 4444
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=9.7e-28 Score=249.43 Aligned_cols=308 Identities=16% Similarity=0.238 Sum_probs=251.2
Q ss_pred CccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccC
Q 007219 9 LIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGS 88 (612)
Q Consensus 9 L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~ 88 (612)
+..++.+..+++|++|++++|. +..++ .+..+++|++|++++| .++.+|....+++|++|++++|. +..+| .+.+
T Consensus 34 ~~~~~~~~~l~~L~~L~l~~~~-i~~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~ 108 (347)
T 4fmz_A 34 VTDVVTQEELESITKLVVAGEK-VASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDIS-ALQN 108 (347)
T ss_dssp TTSEECHHHHTTCSEEECCSSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTT
T ss_pred cCCcccchhcccccEEEEeCCc-cccch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCch-HHcC
Confidence 4455667789999999999864 45554 4889999999999996 66777773349999999999986 55555 4889
Q ss_pred CCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEc
Q 007219 89 MECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHL 168 (612)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L 168 (612)
+++|++|++++|.+..++. +..+++|+.|++++|.....++. +..+++|++|++++|.... .+. +..+++|++|++
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSL 184 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEEC
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEc
Confidence 9999999999999999887 88999999999999987777665 8999999999999996444 333 889999999999
Q ss_pred cCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCccc
Q 007219 169 EGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQS 248 (612)
Q Consensus 169 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~ 248 (612)
++|.+..++. +..+++|+.|++++|......+ +..+++|++|++++|..... +. +..+++|+.|++++|....
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-- 257 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-- 257 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC--
T ss_pred cCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC--
Confidence 9999999877 8899999999999987655443 78999999999999976554 33 8899999999999986322
Q ss_pred CcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-ccchhhhcccc
Q 007219 249 TSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-SLPASIIHLSK 327 (612)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~L~~ 327 (612)
++.+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+. ..|..+..+++
T Consensus 258 ----------------------~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 258 ----------------------INAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp ----------------------CGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred ----------------------ChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 2336678899999999999864 4 45788999999999999998 45567899999
Q ss_pred ccccccccccccccCCCC--CCCccEEeccCCC
Q 007219 328 LGKMVLEDCKRLQSLPQP--PPSIVSIRVDGCT 358 (612)
Q Consensus 328 L~~L~l~~c~~L~~lp~l--p~sL~~L~i~~C~ 358 (612)
|++|++++|+ ++.++.+ .++|+.|++.+|+
T Consensus 313 L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 313 LTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 9999999997 4444322 3566666666553
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.1e-27 Score=249.05 Aligned_cols=296 Identities=19% Similarity=0.228 Sum_probs=246.7
Q ss_pred CCCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCc
Q 007219 1 MSLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLK 80 (612)
Q Consensus 1 l~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 80 (612)
|+++++ .+..+|.+..+++|++|++++| .+..++. +..+++|++|++++| .++.+|....+++|++|++++|. +.
T Consensus 49 L~l~~~-~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~-i~ 123 (347)
T 4fmz_A 49 LVVAGE-KVASIQGIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDN-IS 123 (347)
T ss_dssp EECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSC-CC
T ss_pred EEEeCC-ccccchhhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCc-cc
Confidence 356776 4788999999999999999997 4556665 899999999999996 66777754449999999999987 45
Q ss_pred ccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcc
Q 007219 81 KFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESM 160 (612)
Q Consensus 81 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l 160 (612)
.++. +..+++|++|+++++.....+..+..+++|+.|++++|... .++. +..+++|++|++++|.. ..++. +..+
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l 198 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQI-EDISP-LASL 198 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGC
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcc-ccccc-ccCC
Confidence 5555 88999999999999966655556999999999999998754 4444 88999999999999954 44554 8899
Q ss_pred ccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEecc
Q 007219 161 EQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDIS 240 (612)
Q Consensus 161 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~ 240 (612)
++|+.|++++|.+..++. +..+++|+.|++++|.... ++. +..+++|++|++++|.... + +.+..+++|+.|+++
T Consensus 199 ~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVG 273 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECC
T ss_pred CccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEcc
Confidence 999999999999998876 8899999999999997654 443 8899999999999996654 3 468899999999999
Q ss_pred CCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccch
Q 007219 241 GCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPA 320 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~ 320 (612)
+|.... ++.+..+++|+.|++++|.+. +..|..+..+++|++|+|++|.++.++.
T Consensus 274 ~n~l~~------------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 274 SNQISD------------------------ISVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SSCCCC------------------------CGGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCccCC------------------------ChhhcCCCCCCEEECcCCcCC-CcChhHhhccccCCEEEccCCccccccC
Confidence 986332 233667889999999999985 4566778899999999999999998876
Q ss_pred hhhcccccccccccccc
Q 007219 321 SIIHLSKLGKMVLEDCK 337 (612)
Q Consensus 321 ~i~~L~~L~~L~l~~c~ 337 (612)
+..+++|++|++++|.
T Consensus 329 -~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 -LASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGCTTCSEESSSCC-
T ss_pred -hhhhhccceeehhhhc
Confidence 8999999999999985
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=4.8e-28 Score=261.21 Aligned_cols=318 Identities=21% Similarity=0.147 Sum_probs=243.8
Q ss_pred CCCCCCcCCccC-C-CCCCCCCccEEeccCCCCccccc-cccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCC
Q 007219 1 MSLKHSENLIRT-P-DFSRVPNLEQLILEGCTRLHEIH-PSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGC 76 (612)
Q Consensus 1 l~Ls~~~~L~~~-p-~l~~l~~L~~L~L~~c~~l~~i~-~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c 76 (612)
|||++++ +..+ | .|+.+++|++|++++|.....++ ..+..+++|++|++++|......|..+. +++|++|++++|
T Consensus 35 L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 35 VDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 5788874 5555 4 58999999999999987765664 5789999999999999765545566666 999999999999
Q ss_pred cCCcccCcc--ccCCCCCCeeecCCcCCccc-ccc-cccCCCCcEEeccCCCCCcccccccccC----------------
Q 007219 77 LKLKKFPDI--VGSMECLQELHLDGTDIKEL-PLS-IELLSGLVRLTLYGCKNFERIPSTISAL---------------- 136 (612)
Q Consensus 77 ~~l~~~p~~--~~~l~~L~~L~L~~~~i~~l-p~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l---------------- 136 (612)
...+..|.. ++.+++|++|++++|.+..+ |.. +..+++|++|++++|......|..+..+
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccc
Confidence 866555544 88999999999999999977 554 8899999999999998766666555544
Q ss_pred ------------------CCCCEEecCCCCCCccchhhhhcc---ccccEEEccCcCCCCC-----------Chhhh--c
Q 007219 137 ------------------KYLSTLNLSGLWKLREFPEIVESM---EQLLELHLEGTAIRGL-----------PASIE--F 182 (612)
Q Consensus 137 ------------------~~L~~L~L~~~~~l~~~p~~l~~l---~~L~~L~L~~~~i~~l-----------p~~i~--~ 182 (612)
++|++|++++|......|..+... .+|+.|+++++..... +..+. .
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGT
T ss_pred ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccc
Confidence 345555555554444444444333 4555555554432210 01111 2
Q ss_pred cCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceeccc
Q 007219 183 LSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRR 262 (612)
Q Consensus 183 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 262 (612)
.++|+.|++++|......|..+..+++|+.|++++|...+..|..++.+++|+.|++++|......
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 339 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-------------- 339 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--------------
Confidence 368999999999988888999999999999999999988888889999999999999998643210
Q ss_pred CCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchh-hhcccccccccccccccccc
Q 007219 263 NSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPAS-IIHLSKLGKMVLEDCKRLQS 341 (612)
Q Consensus 263 ~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~L~~L~~L~l~~c~~L~~ 341 (612)
...+..+++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+|.. +..+++|++|++++|+.-..
T Consensus 340 --------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 340 --------SRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp --------GGGGTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred --------hhHhcCcccCCEEECCCCccc-ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 012677899999999999985 45578899999999999999999988864 58899999999999876544
Q ss_pred C
Q 007219 342 L 342 (612)
Q Consensus 342 l 342 (612)
.
T Consensus 411 ~ 411 (455)
T 3v47_A 411 C 411 (455)
T ss_dssp T
T ss_pred C
Confidence 3
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.7e-28 Score=269.59 Aligned_cols=326 Identities=20% Similarity=0.224 Sum_probs=213.3
Q ss_pred cCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCC-CccC-CCCccEEEccCCcCCcccCc
Q 007219 7 ENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALP-AKIF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 7 ~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
+.++++|. .-.++|++|++++|......+..++.+++|++|++++|. ++.++ ..+. +++|++|++++|...+..|.
T Consensus 15 ~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 15 RSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp SCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred Cccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHH
Confidence 46778886 234789999999876444445678889999999999864 44554 4444 88999999998875555555
Q ss_pred cccCCCCCCeeecCCcCCcc--cccccccCCCCcEEeccCCCCCcccc-cccccCCCCCEEecCCCCCCccchhhhhccc
Q 007219 85 IVGSMECLQELHLDGTDIKE--LPLSIELLSGLVRLTLYGCKNFERIP-STISALKYLSTLNLSGLWKLREFPEIVESME 161 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~ 161 (612)
.++++++|++|++++|.++. +|..++++++|++|++++|.....+| ..+..+++|++|++++|......|..+..++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 68889999999999998884 46778888999999998887666666 4678888888888888876666777777777
Q ss_pred cccEEEccCcCCCCCChhh-hccCCCcEEeecCCCCCCcc--c-----------------------------ccc-----
Q 007219 162 QLLELHLEGTAIRGLPASI-EFLSGLVLLNLKDCKNLKSL--P-----------------------------RTI----- 204 (612)
Q Consensus 162 ~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~c~~l~~l--p-----------------------------~~i----- 204 (612)
+|++|+++++.+..+|..+ ..+++|+.|++++|...+.. | ..+
T Consensus 173 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred cCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 7777776666666555443 34566666666655433210 0 000
Q ss_pred -------------------------c-----------------------------CCCCCCEEEecCCCCCccccccc-C
Q 007219 205 -------------------------N-----------------------------GLRSLKTLHLSGCSKLKNVPENL-G 229 (612)
Q Consensus 205 -------------------------~-----------------------------~l~~L~~L~Ls~c~~l~~lp~~l-~ 229 (612)
. ..++|+.|++++|. ++.+|..+ +
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~ 331 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQ 331 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHH
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHh
Confidence 1 11345555555543 33455554 4
Q ss_pred CCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCC---ccccCcCCCC
Q 007219 230 KVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIP---SDIGHLCSLK 306 (612)
Q Consensus 230 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip---~~l~~l~sL~ 306 (612)
.+++|+.|++++|........ ....++.+++|+.|+|++|++.+ ++ ..+..+++|+
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~-------------------~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLK-------------------NSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLT 390 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHH-------------------HHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCC
T ss_pred cCccccEEEccCCcccccccc-------------------chhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCC
Confidence 688999999998874321000 00113455667777777766643 32 2355666777
Q ss_pred EEeccCCCccccchhhhccccccccccccccccccCCC-CCCCccEEeccCC
Q 007219 307 ELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQ-PPPSIVSIRVDGC 357 (612)
Q Consensus 307 ~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~-lp~sL~~L~i~~C 357 (612)
+|+|++|+++.+|..+..+++|++|++++|. ++.+|. .|++|+.|++++|
T Consensus 391 ~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp EEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS
T ss_pred EEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC
Confidence 7777777666666666666677777776664 444443 3556666666655
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.5e-27 Score=267.00 Aligned_cols=343 Identities=18% Similarity=0.183 Sum_probs=239.8
Q ss_pred cCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccC-CCccC-CCCccEEEccCCcCCcccCc
Q 007219 7 ENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRAL-PAKIF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 7 ~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~l-p~~~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
++++.+|. .-.++|++|+++++......+..++.+++|++|++++|. ++.+ |..+. +++|++|+|++|......|.
T Consensus 21 ~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 21 QKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp SCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 36888886 223889999999966544444589999999999999974 5555 44454 99999999999986666689
Q ss_pred cccCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCc-ccccccccCCCCCEEecCCCCCCccchhhhhccc-
Q 007219 85 IVGSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFE-RIPSTISALKYLSTLNLSGLWKLREFPEIVESME- 161 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~- 161 (612)
.++++++|++|++++|.++.++ ..++++++|++|++++|.... .+|..++.+++|++|++++|......+..++.+.
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 9999999999999999999887 679999999999999998665 6799999999999999999865544443333332
Q ss_pred --------------------------------------------------------------------------------
Q 007219 162 -------------------------------------------------------------------------------- 161 (612)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (612)
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence
Q ss_pred ---------------------------cccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEE
Q 007219 162 ---------------------------QLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLH 214 (612)
Q Consensus 162 ---------------------------~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 214 (612)
+|+.|+++++.+..+| .+..+++|+.|++.+|.. +.+| .+ .+++|+.|+
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~ 334 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLT 334 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceee
Confidence 2333333333333344 455566788888888877 7788 44 889999999
Q ss_pred ecCCCCCcccccccCCCCCCcEEeccCCCCCccc--Ccccccccce-ecccCCCCccccCCCCCCCCcccEEeccCCCCC
Q 007219 215 LSGCSKLKNVPENLGKVESLEVLDISGCKGLLQS--TSWFLHFPIT-LIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLG 291 (612)
Q Consensus 215 Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 291 (612)
+++|.....+ .++.+++|+.|++++|...... .......+.+ ......+.....-..+..+++|+.|++++|.+.
T Consensus 335 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 335 LTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp EESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEE
T ss_pred ccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccC
Confidence 9998766655 4667888888888887632210 1111111111 111122222111123677778888888888774
Q ss_pred CCCCC-ccccCcCCCCEEeccCCCcc-ccchhhhcccccccccccccccccc-CCCC---CCCccEEeccCCC
Q 007219 292 EGAIP-SDIGHLCSLKELYLSRNSFV-SLPASIIHLSKLGKMVLEDCKRLQS-LPQP---PPSIVSIRVDGCT 358 (612)
Q Consensus 292 ~~~ip-~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~L~~L~~L~l~~c~~L~~-lp~l---p~sL~~L~i~~C~ 358 (612)
. ..| ..+..+++|++|++++|.+. ..|..+..+++|++|++++|..... +|.. .++|+.|++.+|.
T Consensus 413 ~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 413 R-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp S-TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred C-ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 3 333 46677788888888888777 3556677778888888877765442 3432 3677777777763
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.9e-27 Score=255.87 Aligned_cols=305 Identities=18% Similarity=0.129 Sum_probs=173.1
Q ss_pred CCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccC-CCccC-CCCccEEEccCCcCCcccCcc
Q 007219 8 NLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRAL-PAKIF-MKSLETLVLSGCLKLKKFPDI 85 (612)
Q Consensus 8 ~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~l-p~~~~-l~~L~~L~L~~c~~l~~~p~~ 85 (612)
+++.+|. .-.++++.|+|++|......+..+..+++|++|+|++|. +..+ |..+. +++|++|+|++|......+..
T Consensus 22 ~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 22 RFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred CcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCccc
Confidence 4555554 223566666666644333334456666666666666643 3333 33333 666666666666533222234
Q ss_pred ccCCCCCCeeecCCcCCccc-ccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcccccc
Q 007219 86 VGSMECLQELHLDGTDIKEL-PLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLL 164 (612)
Q Consensus 86 ~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~ 164 (612)
+.++++|++|++++|.+..+ |..+..+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 56666666666666666644 34566666666666666655444455566666666666666644444445566666666
Q ss_pred EEEccCcCCCCCCh-hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 165 ELHLEGTAIRGLPA-SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 165 ~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
.|++++|.+..++. .+..+++|+.|++++|.....+|..+....+|++|++++|......+..++.+++|+.|++++|.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 66666666665432 45566666666666666666666555555566666666665443222445666666666666654
Q ss_pred CCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchh-h
Q 007219 244 GLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPAS-I 322 (612)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~-i 322 (612)
.... ....+..+++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|.. +
T Consensus 260 l~~~----------------------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 260 ISTI----------------------EGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp CCEE----------------------CTTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred CCcc----------------------ChhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 2210 0011445566666666666653 33455566666666666666666655543 3
Q ss_pred hcccccccccccccc
Q 007219 323 IHLSKLGKMVLEDCK 337 (612)
Q Consensus 323 ~~L~~L~~L~l~~c~ 337 (612)
..+++|+.|++++++
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 555666666666553
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.7e-27 Score=262.51 Aligned_cols=328 Identities=18% Similarity=0.152 Sum_probs=201.3
Q ss_pred CCCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccC-CCccC-CCCccEEEccCCcC
Q 007219 1 MSLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRAL-PAKIF-MKSLETLVLSGCLK 78 (612)
Q Consensus 1 l~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~l-p~~~~-l~~L~~L~L~~c~~ 78 (612)
+|++++ +++.+|.- -.++|++|++++|......+..++.+++|++|++++| .++.+ |..+. +++|++|+|++|.
T Consensus 36 l~ls~~-~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~- 111 (562)
T 3a79_B 36 VDYSNR-NLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR- 111 (562)
T ss_dssp EECTTS-CCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred EEcCCC-CCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-
Confidence 467766 58888861 2388999999987654444468889999999999986 45555 44444 8999999999987
Q ss_pred CcccCccccCCCCCCeeecCCcCCcccc--cccccCCCCcEEeccCCCCCcccccccccCCCC--CEEecCCCCC--Ccc
Q 007219 79 LKKFPDIVGSMECLQELHLDGTDIKELP--LSIELLSGLVRLTLYGCKNFERIPSTISALKYL--STLNLSGLWK--LRE 152 (612)
Q Consensus 79 l~~~p~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L--~~L~L~~~~~--l~~ 152 (612)
+..+|.. .+++|++|++++|.++.+| ..++++++|++|++++|.... ..+..+++| ++|++++|.. ...
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeeccccccccc
Confidence 5577776 7899999999999998764 678899999999999876543 234445555 7777777655 222
Q ss_pred chhhhhc--------------------------cc---------------------------------------------
Q 007219 153 FPEIVES--------------------------ME--------------------------------------------- 161 (612)
Q Consensus 153 ~p~~l~~--------------------------l~--------------------------------------------- 161 (612)
.|..+.. ++
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 2222221 11
Q ss_pred ----------cccEEEccCcCCC-CCChhh-----hccC--------------------------CCcEEeecCCCCCCc
Q 007219 162 ----------QLLELHLEGTAIR-GLPASI-----EFLS--------------------------GLVLLNLKDCKNLKS 199 (612)
Q Consensus 162 ----------~L~~L~L~~~~i~-~lp~~i-----~~l~--------------------------~L~~L~L~~c~~l~~ 199 (612)
+|++|++++|.+. .+|..+ ..++ +|+.|++++|.....
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 4555555555554 444433 2222 233333333322110
Q ss_pred ccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCccc--Ccccccccc-eecccCCCCccccCCC--C
Q 007219 200 LPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQS--TSWFLHFPI-TLIRRNSDPVAWRFPS--L 274 (612)
Q Consensus 200 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~--l 274 (612)
. ....+++|+.|++++|...+.+|..++.+++|+.|++++|...... ...+...+. .......+.....+|. +
T Consensus 347 ~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 347 V--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred c--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 0 0156778888888888777777777788888888888877633211 001111111 1111222222222332 5
Q ss_pred CCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhccccccccccccccccccCC
Q 007219 275 SGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLP 343 (612)
Q Consensus 275 ~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp 343 (612)
..+++|+.|++++|.+. +.+|..+. ++|+.|+|++|+++.+|..+..+++|++|++++|. ++.+|
T Consensus 425 ~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~ 489 (562)
T 3a79_B 425 AWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVP 489 (562)
T ss_dssp CCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCC
T ss_pred cCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCC
Confidence 56677777777777764 33443332 57777777777777777777777777777777763 34444
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=268.73 Aligned_cols=341 Identities=16% Similarity=0.152 Sum_probs=229.6
Q ss_pred cCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCC-CccC-CCCccEEEccCCcCCcccCc
Q 007219 7 ENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALP-AKIF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 7 ~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
.+|+.+|. ..++|++|+|++|......+.+++.+++|++|+|++|.....++ ..+. +++|++|+|++|......|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 36899998 66899999999976655557789999999999999987777774 4444 99999999999987777789
Q ss_pred cccCCCCCCeeecCCcCCcc-cccc--cccCCCCcEEeccCCCCCcccc-cccccCCCCCEEecCCCCCCccchhhhhcc
Q 007219 85 IVGSMECLQELHLDGTDIKE-LPLS--IELLSGLVRLTLYGCKNFERIP-STISALKYLSTLNLSGLWKLREFPEIVESM 160 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l 160 (612)
.++++++|++|+|++|.+.. +|.. ++++++|++|++++|......+ ..++.+++|++|++++|......+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 99999999999999999985 5554 8899999999999988655443 568899999999999997777777777776
Q ss_pred --ccccEEEccCcCCCC-CChhhhccCC------CcEEeecCCCCCCccccccc--------------------------
Q 007219 161 --EQLLELHLEGTAIRG-LPASIEFLSG------LVLLNLKDCKNLKSLPRTIN-------------------------- 205 (612)
Q Consensus 161 --~~L~~L~L~~~~i~~-lp~~i~~l~~------L~~L~L~~c~~l~~lp~~i~-------------------------- 205 (612)
++|+.|++++|.+.. .|..++.+.+ |+.|++++|......+..+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 788888888887764 4444444443 78888887754433332221
Q ss_pred ----------C--CCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccc-eecccCCCCccccCC
Q 007219 206 ----------G--LRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPI-TLIRRNSDPVAWRFP 272 (612)
Q Consensus 206 ----------~--l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 272 (612)
. .++|+.|++++|...+..+..++.+++|+.|++++|.........+...+. ..+....+......+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1 256777777777776666777777778888877777643321111111111 111111121111222
Q ss_pred -CCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhccccccccccccccccccCCCCCCCccE
Q 007219 273 -SLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQPPPSIVS 351 (612)
Q Consensus 273 -~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~lp~sL~~ 351 (612)
.+.++++|+.|++++|.+. ...+..+..+++|+.|+|++|.++.++. +++|+.|++++|+ +..+|....+++.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~-l~~l~~~~~~l~~ 405 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNK-LVTLPKINLTANL 405 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCC-CCCCCCCCTTCCE
T ss_pred HHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCC-cccccccccccce
Confidence 2556666666666666653 2233345566666666666666655443 5556666665543 3345544444444
Q ss_pred Eecc
Q 007219 352 IRVD 355 (612)
Q Consensus 352 L~i~ 355 (612)
|++.
T Consensus 406 L~ls 409 (844)
T 3j0a_A 406 IHLS 409 (844)
T ss_dssp EECC
T ss_pred eecc
Confidence 4443
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.1e-27 Score=262.42 Aligned_cols=349 Identities=18% Similarity=0.228 Sum_probs=230.9
Q ss_pred CCCCCCcCCccCC--CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-cC-CCCccEEEccCC
Q 007219 1 MSLKHSENLIRTP--DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGC 76 (612)
Q Consensus 1 l~Ls~~~~L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c 76 (612)
|||++++ +..++ +|+.+++|++|++++|......+..++.+++|++|++++| .+..+|.. +. +++|++|++++|
T Consensus 31 L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 31 LDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp EECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTC
T ss_pred EECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCC
Confidence 4788875 66653 5899999999999997655555568899999999999996 45566654 44 899999999998
Q ss_pred cCCc-ccCccccCCCCCCeeecCCcC-Ccccc-cccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccc
Q 007219 77 LKLK-KFPDIVGSMECLQELHLDGTD-IKELP-LSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREF 153 (612)
Q Consensus 77 ~~l~-~~p~~~~~l~~L~~L~L~~~~-i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~ 153 (612)
.... ..|..++++++|++|++++|. +..+| ..+..+++|++|++++|......|..+..+++|++|+++++.. ..+
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~ 187 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFL 187 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTH
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-ccc
Confidence 7554 456778999999999999988 66776 4688899999999999887777777787777777777776643 333
Q ss_pred hhh-hhccccccEEEccCcCCCCCC---hh--------------------------------------------------
Q 007219 154 PEI-VESMEQLLELHLEGTAIRGLP---AS-------------------------------------------------- 179 (612)
Q Consensus 154 p~~-l~~l~~L~~L~L~~~~i~~lp---~~-------------------------------------------------- 179 (612)
|.. +..+++|++|++++|.+..++ ..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 433 244666666666666555421 00
Q ss_pred --------------------------------------hhccCCCcEEeecCCCCCCcccccc-cCCCCCCEEEecCCCC
Q 007219 180 --------------------------------------IEFLSGLVLLNLKDCKNLKSLPRTI-NGLRSLKTLHLSGCSK 220 (612)
Q Consensus 180 --------------------------------------i~~l~~L~~L~L~~c~~l~~lp~~i-~~l~~L~~L~Ls~c~~ 220 (612)
.....+|+.|++++|. +..+|..+ ..+++|+.|++++|..
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCcc
Confidence 0112345555555544 34566655 4688888888888887
Q ss_pred Cccccc---ccCCCCCCcEEeccCCCCCcccC--cccccccce-ecccCCCCccccCCC-CCCCCcccEEeccCCCCCCC
Q 007219 221 LKNVPE---NLGKVESLEVLDISGCKGLLQST--SWFLHFPIT-LIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEG 293 (612)
Q Consensus 221 l~~lp~---~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~ 293 (612)
.+.+|. .++.+++|+.|++++|....... ......+.+ ......+... .+|. +..+++|++|++++|.+..
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~- 424 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV- 424 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-
Confidence 776643 36778888888888876432110 111111111 1112222222 3444 5666777777777777643
Q ss_pred CCCccccCcCCCCEEeccCCCccccchhhhccccccccccccccccccCCCC--CCCccEEeccCCCCccee
Q 007219 294 AIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQP--PPSIVSIRVDGCTSLETI 363 (612)
Q Consensus 294 ~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~l--p~sL~~L~i~~C~~L~~l 363 (612)
+|..+ .++|++|+|++|+++.++ ..+++|++|++++| .++.+|.. .++|+.|+++++ .++.+
T Consensus 425 -l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~ 488 (549)
T 2z81_A 425 -VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSV 488 (549)
T ss_dssp -CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCC
T ss_pred -ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCc
Confidence 44333 246777777777766554 36778888888887 45567653 567888888776 44444
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.7e-27 Score=262.47 Aligned_cols=327 Identities=20% Similarity=0.146 Sum_probs=220.8
Q ss_pred CCCCCCcCCccCC--CCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcC
Q 007219 1 MSLKHSENLIRTP--DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLK 78 (612)
Q Consensus 1 l~Ls~~~~L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~ 78 (612)
|||++++ +..+| +|+.+++|++|++++|......+..++.+++|++|++++| .++.+|.. .+++|++|++++|..
T Consensus 57 L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 57 LSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-PMASLRHLDLSFNDF 133 (562)
T ss_dssp EECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-CCTTCSEEECCSSCC
T ss_pred EECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-ccccCCEEECCCCCc
Confidence 5788885 77776 6999999999999997655444678999999999999995 57789987 899999999999985
Q ss_pred Cc-ccCccccCCCCCCeeecCCcCCcccccccccCCCC--cEEeccCCCC--CcccccccccCC----------------
Q 007219 79 LK-KFPDIVGSMECLQELHLDGTDIKELPLSIELLSGL--VRLTLYGCKN--FERIPSTISALK---------------- 137 (612)
Q Consensus 79 l~-~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L--~~L~L~~~~~--l~~lp~~l~~l~---------------- 137 (612)
.. .+|..++++++|++|++++|.++.. .+..+.+| +.|++++|.. ....|..+..+.
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~ 211 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCC
T ss_pred cccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhh
Confidence 54 3457899999999999999998853 35556666 8888888765 333333333221
Q ss_pred -----------------------------------------------------------------CCCEEecCCCCCCcc
Q 007219 138 -----------------------------------------------------------------YLSTLNLSGLWKLRE 152 (612)
Q Consensus 138 -----------------------------------------------------------------~L~~L~L~~~~~l~~ 152 (612)
+|++|++++|...+.
T Consensus 212 ~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291 (562)
T ss_dssp CCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSC
T ss_pred hhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecc
Confidence 555666666544444
Q ss_pred chhhh-----hcc--------------------------ccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCccc
Q 007219 153 FPEIV-----ESM--------------------------EQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLP 201 (612)
Q Consensus 153 ~p~~l-----~~l--------------------------~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp 201 (612)
+|..+ ..+ .+|++|+++++.+..++. ...+++|+.|++++|...+.+|
T Consensus 292 ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 370 (562)
T 3a79_B 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVF 370 (562)
T ss_dssp CCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTT
T ss_pred ccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchh
Confidence 44433 122 234444444444433221 1456667777777766666666
Q ss_pred ccccCCCCCCEEEecCCCCCc--ccccccCCCCCCcEEeccCCCCCc-ccCcccccccc-eecccCCCCccccCCCCCCC
Q 007219 202 RTINGLRSLKTLHLSGCSKLK--NVPENLGKVESLEVLDISGCKGLL-QSTSWFLHFPI-TLIRRNSDPVAWRFPSLSGL 277 (612)
Q Consensus 202 ~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~l 277 (612)
..+..+++|+.|++++|...+ .+|..++.+++|+.|++++|.... .+...+...+. .......+......|. .+
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l 448 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CL 448 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS--SC
T ss_pred hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh--hh
Confidence 666667777777777665443 334556666777777776665332 11111111111 1111122222122222 22
Q ss_pred -CcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchh-hhcccccccccccccc
Q 007219 278 -YCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPAS-IIHLSKLGKMVLEDCK 337 (612)
Q Consensus 278 -~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~L~~L~~L~l~~c~ 337 (612)
++|+.|+|++|++. .+|..+..+++|++|+|++|+++.+|.. +..+++|+.|++++|+
T Consensus 449 ~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 449 PPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 68999999999996 4999888999999999999999999987 8888899998888874
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=252.04 Aligned_cols=307 Identities=20% Similarity=0.240 Sum_probs=256.9
Q ss_pred cEEeccCCCCccccccccccCCCccEEecCCCCCCccCC-CccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCC
Q 007219 22 EQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALP-AKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDG 99 (612)
Q Consensus 22 ~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~ 99 (612)
+.++.++ ..+..+|..+ .++++.|+|++| .++.++ ..+. +++|++|+|++|......|..+.++++|++|+|++
T Consensus 14 ~~v~c~~-~~l~~ip~~~--~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHR-KRFVAVPEGI--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCS-CCCSSCCSCC--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCC-CCcCcCCCCC--CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 4566655 5677888765 368999999995 456664 4444 99999999999986666788999999999999999
Q ss_pred cCCcccccc-cccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCCh
Q 007219 100 TDIKELPLS-IELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPA 178 (612)
Q Consensus 100 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~ 178 (612)
|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|++++|.+..+|.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 999999865 7899999999999998877778889999999999999997777677889999999999999999999875
Q ss_pred -hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccc
Q 007219 179 -SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPI 257 (612)
Q Consensus 179 -~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 257 (612)
.+..+++|+.|++++|......+..+..+++|+.|++++|...+.+|.......+|+.|++++|....
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----------- 238 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA----------- 238 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-----------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-----------
Confidence 58899999999999998877777789999999999999999999999888888899999999986332
Q ss_pred eecccCCCCccccCC--CCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcccc-chhhhccccccccccc
Q 007219 258 TLIRRNSDPVAWRFP--SLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSL-PASIIHLSKLGKMVLE 334 (612)
Q Consensus 258 ~~~~~~~~~~~~~l~--~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~L~~L~~L~l~ 334 (612)
+| .+..+++|+.|+|++|.+. +..+..+..+++|+.|+|++|.+..+ |..+..+++|+.|+++
T Consensus 239 -------------~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 239 -------------VPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp -------------CCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred -------------cCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 22 2667899999999999985 34456688899999999999999965 6788999999999999
Q ss_pred cccccccCCCC----CCCccEEeccCCC
Q 007219 335 DCKRLQSLPQP----PPSIVSIRVDGCT 358 (612)
Q Consensus 335 ~c~~L~~lp~l----p~sL~~L~i~~C~ 358 (612)
+| .++.+|.- .++|+.|++.+++
T Consensus 305 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 305 GN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 98 45555531 2456666665543
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.4e-26 Score=248.87 Aligned_cols=311 Identities=18% Similarity=0.265 Sum_probs=221.5
Q ss_pred CCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcc
Q 007219 2 SLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKK 81 (612)
Q Consensus 2 ~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~ 81 (612)
+++++ .+..+|.+..+++|++|++++|. +..+++ ++.+++|++|++++| .+..++....+++|++|++++|. +..
T Consensus 52 ~l~~~-~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~ 126 (466)
T 1o6v_A 52 QADRL-GIKSIDGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQ-ITD 126 (466)
T ss_dssp ECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCC
T ss_pred ecCCC-CCccCcchhhhcCCCEEECCCCc-cCCchh-hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCC-CCC
Confidence 45655 46778888899999999999864 555555 889999999999985 45566653338999999999986 444
Q ss_pred cCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccc
Q 007219 82 FPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESME 161 (612)
Q Consensus 82 ~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~ 161 (612)
++. +.++++|++|++++|.+..++. +..+++|+.|++.++ ...++. +..+++|+.|++++|. +..++ .+..++
T Consensus 127 ~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~ 199 (466)
T 1o6v_A 127 IDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNK-VSDIS-VLAKLT 199 (466)
T ss_dssp CGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCT
T ss_pred ChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCc-CCCCh-hhccCC
Confidence 554 7889999999999999888764 788889999988642 333443 7888899999998885 34443 477888
Q ss_pred cccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccC
Q 007219 162 QLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISG 241 (612)
Q Consensus 162 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~ 241 (612)
+|++|++++|.+..++. ++.+++|+.|++++|.... + ..+..+++|+.|++++|...+..+ +..+++|+.|++++
T Consensus 200 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 200 NLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred CCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence 99999999988888765 7778889999998886543 3 357788889999999887655444 77888899999888
Q ss_pred CCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchh
Q 007219 242 CKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPAS 321 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~ 321 (612)
|.... ++.+..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+..++.
T Consensus 275 n~l~~------------------------~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 275 NQISN------------------------ISPLAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp SCCCC------------------------CGGGTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG-
T ss_pred CccCc------------------------cccccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh-
Confidence 76332 1124455666666666666642 322 5566666666666666665544
Q ss_pred hhccccccccccccccccccCCCC--CCCccEEeccCCC
Q 007219 322 IIHLSKLGKMVLEDCKRLQSLPQP--PPSIVSIRVDGCT 358 (612)
Q Consensus 322 i~~L~~L~~L~l~~c~~L~~lp~l--p~sL~~L~i~~C~ 358 (612)
+..+++|++|++++| .+..++.+ .++|+.|++.+|.
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 566666666666666 33333332 2556666666553
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=269.34 Aligned_cols=171 Identities=18% Similarity=0.125 Sum_probs=127.6
Q ss_pred CCCCCCcCCccCC--CCCCCCCccEEeccCCCCcccc-ccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCC
Q 007219 1 MSLKHSENLIRTP--DFSRVPNLEQLILEGCTRLHEI-HPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGC 76 (612)
Q Consensus 1 l~Ls~~~~L~~~p--~l~~l~~L~~L~L~~c~~l~~i-~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c 76 (612)
||||+++ +..++ +|+.+++|++|+|++|.....+ +..++++++|++|+|++|......|..+. +++|++|+|++|
T Consensus 29 LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 29 LLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 4778774 55543 6999999999999999777777 56899999999999999765545576666 999999999999
Q ss_pred cCCcccCcc--ccCCCCCCeeecCCcCCcccc--cccccCCCCcEEeccCCCCCcccccccccC--CCCCEEecCCCCCC
Q 007219 77 LKLKKFPDI--VGSMECLQELHLDGTDIKELP--LSIELLSGLVRLTLYGCKNFERIPSTISAL--KYLSTLNLSGLWKL 150 (612)
Q Consensus 77 ~~l~~~p~~--~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l--~~L~~L~L~~~~~l 150 (612)
...+.+|.. ++++++|++|++++|.+..++ ..++++++|++|++++|......+..+..+ ++|+.|++++|...
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 876666654 889999999999999998663 568999999999999987666556555554 56666666665544
Q ss_pred ccchhhhhcccc------ccEEEccCcC
Q 007219 151 REFPEIVESMEQ------LLELHLEGTA 172 (612)
Q Consensus 151 ~~~p~~l~~l~~------L~~L~L~~~~ 172 (612)
...|..++.+.+ |++|++++|.
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred cccccchhhcCCccccCceeEEecCCCc
Confidence 444433333332 5555555543
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.4e-27 Score=257.51 Aligned_cols=309 Identities=17% Similarity=0.107 Sum_probs=224.1
Q ss_pred cEEeccCCCCccccccccccCCCccEEecCCCCCCccCC-CccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCC
Q 007219 22 EQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALP-AKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDG 99 (612)
Q Consensus 22 ~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~ 99 (612)
++|+++++ .+..+|..+. ++|++|++++|. ++.++ ..+. +++|++|++++|......|..++++++|++|++++
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57899985 5668888776 899999999965 55555 3444 99999999999987777788999999999999999
Q ss_pred cCCcccccccccCCCCcEEeccCCCCCc-ccccccccCCCCCEEecCCCCCCccchhhhhccccc--cEEEccCcCC--C
Q 007219 100 TDIKELPLSIELLSGLVRLTLYGCKNFE-RIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQL--LELHLEGTAI--R 174 (612)
Q Consensus 100 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L--~~L~L~~~~i--~ 174 (612)
|.++.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.... ..+..+++| ++|++++|.+ .
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 999999987 89999999999998765 578889999999999999986544 456778888 9999999887 2
Q ss_pred -CCChhhhcc----------------------------------------------------------------------
Q 007219 175 -GLPASIEFL---------------------------------------------------------------------- 183 (612)
Q Consensus 175 -~lp~~i~~l---------------------------------------------------------------------- 183 (612)
..|..+..+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 234333331
Q ss_pred -------------CCCcEEeecCCCCCCcccccc-----cCCCCCCEEEecCCCCCccccc-c-----------------
Q 007219 184 -------------SGLVLLNLKDCKNLKSLPRTI-----NGLRSLKTLHLSGCSKLKNVPE-N----------------- 227 (612)
Q Consensus 184 -------------~~L~~L~L~~c~~l~~lp~~i-----~~l~~L~~L~Ls~c~~l~~lp~-~----------------- 227 (612)
++|+.|++++|...+.+|..+ +.+++|+.+++++|.. .+|. .
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 267777777777666888888 7888888887777765 3441 1
Q ss_pred --------cCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCC-CCCCcc
Q 007219 228 --------LGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGE-GAIPSD 298 (612)
Q Consensus 228 --------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-~~ip~~ 298 (612)
.+.+++|+.|++++|...... ...+..+++|+.|++++|++.+ ..+|..
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTV----------------------FENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTT----------------------TTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred CccccccchhhCCcccEEEeECCccChhh----------------------hhhhccCCCCCEEEccCCccCccccchHH
Confidence 157788999999888643211 1125566677777777776642 023455
Q ss_pred ccCcCCCCEEeccCCCccc-cchh-hhccccccccccccccccccCCC-CCCCccEEeccCCCCcceec
Q 007219 299 IGHLCSLKELYLSRNSFVS-LPAS-IIHLSKLGKMVLEDCKRLQSLPQ-PPPSIVSIRVDGCTSLETIS 364 (612)
Q Consensus 299 l~~l~sL~~L~Ls~n~l~~-lp~~-i~~L~~L~~L~l~~c~~L~~lp~-lp~sL~~L~i~~C~~L~~l~ 364 (612)
+..+++|++|+|++|.+.. +|.. +..+++|+.|++++|.....+|. +|++|+.|++++| .++.++
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip 437 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIP 437 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCC
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccc
Confidence 6667777777777777765 6654 55666777777777655444442 3456777776665 344443
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=254.34 Aligned_cols=345 Identities=19% Similarity=0.152 Sum_probs=254.3
Q ss_pred cCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-cC-CCCccEEEccCCcCCcccCc
Q 007219 7 ENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 7 ~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
.+++++|+ .-.+++++|++++|......+.++..+++|++|++++|. ++.++.. +. +++|++|++++|......|.
T Consensus 17 ~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 17 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp SCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence 36788886 234689999999976544445588999999999999974 6666654 44 99999999999986666668
Q ss_pred cccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCc-ccccccccCCCCCEEecCCCCCCccchhhhhcccc
Q 007219 85 IVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFE-RIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQ 162 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~ 162 (612)
.++++++|++|++++|.++.++. .++.+++|++|++++|.... .+|..++.+++|++|++++|......+..++.+++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 89999999999999999999876 69999999999999987655 57899999999999999999777667788888888
Q ss_pred c----cEEEccCcCCCCCChhhhccCCCcEEeecCCC-------------------------------------------
Q 007219 163 L----LELHLEGTAIRGLPASIEFLSGLVLLNLKDCK------------------------------------------- 195 (612)
Q Consensus 163 L----~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~------------------------------------------- 195 (612)
| ++|++++|.+..++.......+|+.|++++|.
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred cchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 8 89999999998766544444467777777652
Q ss_pred ---------------CCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceec
Q 007219 196 ---------------NLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLI 260 (612)
Q Consensus 196 ---------------~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 260 (612)
....+|..+..+++|++|++++|... .+|..+..+ +|+.|++++|.....+......... .
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~--L 330 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKR--L 330 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCE--E
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCE--E
Confidence 12234455667788889998888644 678888888 8888888888744222111111111 1
Q ss_pred ccCCCCccccCCCCCCCCcccEEeccCCCCCCC-CCCccccCcCCCCEEeccCCCccccchhhhcccccccccccccccc
Q 007219 261 RRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEG-AIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRL 339 (612)
Q Consensus 261 ~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~-~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L 339 (612)
....+......+ ...+++|+.|++++|.+... ..|..+..+++|++|++++|.+..+|..+..+++|+.|++++|...
T Consensus 331 ~l~~n~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 331 TFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp EEESCBSCCBCC-CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred eCcCCccccccc-cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence 111111222222 26678888888888887431 1256677788888888888888888777888888888888887654
Q ss_pred ccCCC----CCCCccEEeccCCC
Q 007219 340 QSLPQ----PPPSIVSIRVDGCT 358 (612)
Q Consensus 340 ~~lp~----lp~sL~~L~i~~C~ 358 (612)
...|. -.++|+.|++.+|.
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSC
T ss_pred cccchhhhhcCCCCCEEeCcCCc
Confidence 44331 23677888877774
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3.9e-26 Score=241.35 Aligned_cols=302 Identities=15% Similarity=0.122 Sum_probs=240.5
Q ss_pred CCCCccEEeccCCCCccccccc-cccCCCccEEecCCCCCCccCCC-ccC-CCCccEEEccCCcCCcccCccccCCCCCC
Q 007219 17 RVPNLEQLILEGCTRLHEIHPS-LLVHKKLIFLNLKGCTSLRALPA-KIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQ 93 (612)
Q Consensus 17 ~l~~L~~L~L~~c~~l~~i~~s-i~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~ 93 (612)
.+++++.|+++++ .+..+|.. +..+++|++|++++|. +..++. .+. +++|++|++++|......|..++++++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4688999999985 46777765 5889999999999964 566655 444 99999999999986666677789999999
Q ss_pred eeecCCcCCcccccc-cccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcC
Q 007219 94 ELHLDGTDIKELPLS-IELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTA 172 (612)
Q Consensus 94 ~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~ 172 (612)
+|++++|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|.... + .+..+++|++|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccccc
Confidence 999999999999987 4889999999999998766666678999999999999985443 3 35678999999999998
Q ss_pred CCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCccc
Q 007219 173 IRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWF 252 (612)
Q Consensus 173 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 252 (612)
+..++ ..++|+.|++++|.... +|.. ..++|+.|++++|...+. ..++.+++|+.|++++|.....
T Consensus 198 l~~~~----~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~----- 263 (390)
T 3o6n_A 198 LSTLA----IPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI----- 263 (390)
T ss_dssp CSEEE----CCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-----
T ss_pred ccccC----CCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc-----
Confidence 87653 35689999999987543 3432 357999999999977653 5688899999999999864321
Q ss_pred ccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhccccccccc
Q 007219 253 LHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMV 332 (612)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 332 (612)
....+..+++|+.|+|++|++.. +|..+..+++|++|+|++|.+..+|..+..+++|++|+
T Consensus 264 -----------------~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 264 -----------------MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp -----------------ESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred -----------------ChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEE
Confidence 01126778899999999999864 77777889999999999999999999999999999999
Q ss_pred cccccccccCC-CCCCCccEEeccCC
Q 007219 333 LEDCKRLQSLP-QPPPSIVSIRVDGC 357 (612)
Q Consensus 333 l~~c~~L~~lp-~lp~sL~~L~i~~C 357 (612)
+++|.. +.++ ...++|+.|++.++
T Consensus 325 L~~N~i-~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 325 LDHNSI-VTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCSSCC-CCCCCCTTCCCSEEECCSS
T ss_pred CCCCcc-ceeCchhhccCCEEEcCCC
Confidence 999863 4443 22345555555443
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-26 Score=244.72 Aligned_cols=294 Identities=19% Similarity=0.182 Sum_probs=241.0
Q ss_pred CCCCCcCCccCCC--CCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-cC-CCCccEEEccCCc
Q 007219 2 SLKHSENLIRTPD--FSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGCL 77 (612)
Q Consensus 2 ~Ls~~~~L~~~p~--l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~ 77 (612)
+++++ .+..+|. |..+++|++|++++|......+..++.+++|++|++++|. ++.+|.. +. +++|++|++++|.
T Consensus 51 ~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 51 TFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp EEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc
Confidence 34554 3677886 7889999999999976444334589999999999999965 5566544 44 9999999999987
Q ss_pred CCcccCc-cccCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchh
Q 007219 78 KLKKFPD-IVGSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPE 155 (612)
Q Consensus 78 ~l~~~p~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~ 155 (612)
+..+|. .++++++|++|++++|.+..++ ..+..+++|+.|++++|.... + .+..+++|+.|++++|... .
T Consensus 129 -l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~l~-~--- 200 (390)
T 3o6n_A 129 -LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLS-T--- 200 (390)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSCCS-E---
T ss_pred -cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccccccc-c---
Confidence 456665 4689999999999999999875 458999999999999987543 3 3677899999999998433 2
Q ss_pred hhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCc
Q 007219 156 IVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLE 235 (612)
Q Consensus 156 ~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~ 235 (612)
+...++|++|++++|.+..+|..+ .++|+.|++++|..... ..+..+++|++|++++|...+..|..++.+++|+
T Consensus 201 -~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 201 -LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp -EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred -cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 234568999999999999887643 58999999999986653 5788999999999999998888899999999999
Q ss_pred EEeccCCCCCcccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCC
Q 007219 236 VLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNS 314 (612)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~ 314 (612)
.|++++|.... ++. ...+++|+.|+|++|++. .+|..+..+++|+.|+|++|.
T Consensus 276 ~L~L~~n~l~~------------------------~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 276 RLYISNNRLVA------------------------LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EEECCSSCCCE------------------------EECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCcCcc------------------------cCcccCCCCCCCEEECCCCcce--ecCccccccCcCCEEECCCCc
Confidence 99999986432 111 456789999999999996 488888999999999999999
Q ss_pred ccccchhhhccccccccccccccc
Q 007219 315 FVSLPASIIHLSKLGKMVLEDCKR 338 (612)
Q Consensus 315 l~~lp~~i~~L~~L~~L~l~~c~~ 338 (612)
++.+| +..+++|+.|++++|+.
T Consensus 330 i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 330 IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCCCC--CCTTCCCSEEECCSSCE
T ss_pred cceeC--chhhccCCEEEcCCCCc
Confidence 99886 77899999999998753
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1e-25 Score=255.52 Aligned_cols=353 Identities=19% Similarity=0.177 Sum_probs=186.2
Q ss_pred CCCCCcCCccC-C-CCCCCC--CccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCC
Q 007219 2 SLKHSENLIRT-P-DFSRVP--NLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGC 76 (612)
Q Consensus 2 ~Ls~~~~L~~~-p-~l~~l~--~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c 76 (612)
+|++++ +..+ | .|..++ +|++|++++|......+..++.+++|++|++++|......|..+. +++|++|++++|
T Consensus 228 ~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 228 SLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp ECTTSC-CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred EccCCc-ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 455553 3322 2 344443 377777777655444455677777777777777644444444444 777777777765
Q ss_pred cCCc-----ccCc----cccCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCC-Ccccccc-ccc--CCCCCEE
Q 007219 77 LKLK-----KFPD----IVGSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKN-FERIPST-ISA--LKYLSTL 142 (612)
Q Consensus 77 ~~l~-----~~p~----~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~-l~~lp~~-l~~--l~~L~~L 142 (612)
.... .+|. .++.+++|++|++++|.+..++ ..+..+++|++|++++|.. ...++.. +.. .++|+.|
T Consensus 307 ~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L 386 (680)
T 1ziw_A 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386 (680)
T ss_dssp BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEE
T ss_pred hhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceE
Confidence 3221 2332 4566777777777777777554 3466777777777776642 2222211 111 2456666
Q ss_pred ecCCCCCCccchhhhhccccccEEEccCcCCCC-CC-hhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCC
Q 007219 143 NLSGLWKLREFPEIVESMEQLLELHLEGTAIRG-LP-ASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSK 220 (612)
Q Consensus 143 ~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~-lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~ 220 (612)
++++|......|..+..+++|++|++++|.+.. +| ..+..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 666665555555566666666666666666652 43 4556666666666666655544455555566666666665543
Q ss_pred C--cccccccCCCCCCcEEeccCCCCCcccCcccccccce-ecccCCCCcc---------ccCCCCCCCCcccEEeccCC
Q 007219 221 L--KNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPIT-LIRRNSDPVA---------WRFPSLSGLYCLRKLDISDC 288 (612)
Q Consensus 221 l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~l~~l~~l~~L~~L~Ls~~ 288 (612)
. +.+|..++.+++|+.|++++|.........+...+.+ .+....+... .....+.++++|+.|+|++|
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 2 4455555666666666666554221110000000000 0000000000 00112455566666666666
Q ss_pred CCCCCCCCc-cccCcCCCCEEeccCCCccccchh-hhccccccccccccccccccCCC-----CCCCccEEeccCCC
Q 007219 289 NLGEGAIPS-DIGHLCSLKELYLSRNSFVSLPAS-IIHLSKLGKMVLEDCKRLQSLPQ-----PPPSIVSIRVDGCT 358 (612)
Q Consensus 289 ~l~~~~ip~-~l~~l~sL~~L~Ls~n~l~~lp~~-i~~L~~L~~L~l~~c~~L~~lp~-----lp~sL~~L~i~~C~ 358 (612)
++. .+|. .+..+++|+.|+|++|+++.+|.. +..+++|+.|++++| .++.++. ..++|+.|++.+++
T Consensus 547 ~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 547 GFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCC--CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 654 2443 355566666666666666655544 355666666666665 3333332 12445555555443
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.4e-25 Score=252.58 Aligned_cols=239 Identities=20% Similarity=0.124 Sum_probs=162.1
Q ss_pred CCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCc
Q 007219 2 SLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLK 80 (612)
Q Consensus 2 ~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~ 80 (612)
|.++. ++.++|.-- .+++++|++++|......+..++.+++|++|++++|......|..+. +++|++|++++|. +.
T Consensus 10 ~cs~~-~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~ 86 (680)
T 1ziw_A 10 DCSHL-KLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LS 86 (680)
T ss_dssp ECCSS-CCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CC
T ss_pred ECCCC-Ccccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cC
Confidence 34443 577888521 27899999988654333334688889999999988643333344444 8889999998886 44
Q ss_pred ccCc-cccCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhh
Q 007219 81 KFPD-IVGSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVE 158 (612)
Q Consensus 81 ~~p~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~ 158 (612)
.+|. .++++++|++|++++|.++.++ ..++++++|++|++++|......|..+..+++|++|++++|......+..+.
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence 5554 6888899999999998888776 5688888999999988877666677788888899999888866555555554
Q ss_pred --ccccccEEEccCcCCCCCC-hhhhcc---------------------------CCCcEEeecCCCCCCcccccccCCC
Q 007219 159 --SMEQLLELHLEGTAIRGLP-ASIEFL---------------------------SGLVLLNLKDCKNLKSLPRTINGLR 208 (612)
Q Consensus 159 --~l~~L~~L~L~~~~i~~lp-~~i~~l---------------------------~~L~~L~L~~c~~l~~lp~~i~~l~ 208 (612)
.+++|++|++++|.+..++ ..+..+ ++|+.|++++|...+..|..+..++
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 4478888888888777643 233322 3455555555555444555555543
Q ss_pred C--CCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 209 S--LKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 209 ~--L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
. |+.|++++|...+..|..++.+++|+.|++++|.
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 3 6666666666555555556666666666666654
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=2.1e-25 Score=230.27 Aligned_cols=283 Identities=20% Similarity=0.199 Sum_probs=185.2
Q ss_pred CccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCC-ccC-CCCccEEEccCCcCCcccCccccCCCCCCeeec
Q 007219 20 NLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPA-KIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHL 97 (612)
Q Consensus 20 ~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L 97 (612)
+++.++++++ .+..+|..+. ++|++|++++| .++.++. .+. +++|++|++++|......|..++++++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5777777763 4556665443 57777888774 4555554 333 777888888777655555777777778888888
Q ss_pred CCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCc--cchhhhhccccccEEEccCcCCCC
Q 007219 98 DGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLR--EFPEIVESMEQLLELHLEGTAIRG 175 (612)
Q Consensus 98 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~--~~p~~l~~l~~L~~L~L~~~~i~~ 175 (612)
++|.++++|..+. ++|+.|++++|......+..+..+++|+.|++++|.... ..+..+..+++|++|++++|.+..
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 8777777776554 677777777776554444556777777777777775532 455667777777777777777777
Q ss_pred CChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccc
Q 007219 176 LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHF 255 (612)
Q Consensus 176 lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 255 (612)
+|..+. ++|+.|++++|......|..+..+++|+.|++++|...+..+..++.+++|+.|++++|....
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------- 254 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--------- 254 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS---------
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc---------
Confidence 776553 677777777777666666677777777777777776666555566777777777777765321
Q ss_pred cceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCc-ccc------CcCCCCEEeccCCCcc---ccchhhhc
Q 007219 256 PITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPS-DIG------HLCSLKELYLSRNSFV---SLPASIIH 324 (612)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~-~l~------~l~sL~~L~Ls~n~l~---~lp~~i~~ 324 (612)
+|. +..+++|++|++++|++.+ ++. .+. ...+|+.|++++|.+. ..|..+..
T Consensus 255 ---------------lp~~l~~l~~L~~L~l~~N~i~~--~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 255 ---------------VPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp ---------------CCTTTTTCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred ---------------CChhhccCCCcCEEECCCCcCCc--cChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 222 5566777777777777643 322 221 2356777777777664 23355666
Q ss_pred cccccccccccc
Q 007219 325 LSKLGKMVLEDC 336 (612)
Q Consensus 325 L~~L~~L~l~~c 336 (612)
+.+|+.++++++
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 667777776665
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.1e-26 Score=251.92 Aligned_cols=301 Identities=15% Similarity=0.128 Sum_probs=239.2
Q ss_pred CCCCccEEeccCCCCccccccc-cccCCCccEEecCCCCCCccCCC-ccC-CCCccEEEccCCcCCcccCccccCCCCCC
Q 007219 17 RVPNLEQLILEGCTRLHEIHPS-LLVHKKLIFLNLKGCTSLRALPA-KIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQ 93 (612)
Q Consensus 17 ~l~~L~~L~L~~c~~l~~i~~s-i~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~ 93 (612)
.+++++.|+++++ .+..+|.. ++.+++|++|+|++|. +..++. .+. +++|++|+|++|......|..++++++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4678899999985 45667664 6789999999999965 556554 444 99999999999986666667789999999
Q ss_pred eeecCCcCCcccccc-cccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcC
Q 007219 94 ELHLDGTDIKELPLS-IELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTA 172 (612)
Q Consensus 94 ~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~ 172 (612)
+|+|++|.++.+|.. ++.+++|++|++++|......|..+..+++|++|++++|.... ++ +..+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCc
Confidence 999999999999877 4899999999999998766667778999999999999995443 33 5678899999999998
Q ss_pred CCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCccc
Q 007219 173 IRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWF 252 (612)
Q Consensus 173 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 252 (612)
+..+ ...++|+.|++++|... .++..+ .++|+.|++++|...+ +..++.+++|+.|++++|....
T Consensus 204 l~~l----~~~~~L~~L~ls~n~l~-~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~------ 268 (597)
T 3oja_B 204 LSTL----AIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK------ 268 (597)
T ss_dssp CSEE----ECCTTCSEEECCSSCCC-EEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE------
T ss_pred cccc----cCCchhheeeccCCccc-cccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC------
Confidence 8764 34568999999998754 333322 3689999999998765 4678889999999999887432
Q ss_pred ccccceecccCCCCccccCC-CCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhcccccccc
Q 007219 253 LHFPITLIRRNSDPVAWRFP-SLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKM 331 (612)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L 331 (612)
..| .+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.+..+|..+..+++|+.|
T Consensus 269 -----------------~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 269 -----------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp -----------------EESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred -----------------CCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 112 26778999999999999864 7888888999999999999999999999999999999
Q ss_pred ccccccccccCC-CCCCCccEEeccCC
Q 007219 332 VLEDCKRLQSLP-QPPPSIVSIRVDGC 357 (612)
Q Consensus 332 ~l~~c~~L~~lp-~lp~sL~~L~i~~C 357 (612)
++++|.. ..+| ...++|+.|++.++
T Consensus 330 ~L~~N~l-~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 330 YLDHNSI-VTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp ECCSSCC-CCCCCCTTCCCSEEECCSS
T ss_pred ECCCCCC-CCcChhhcCCCCEEEeeCC
Confidence 9999864 3333 23345555555554
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.7e-25 Score=239.56 Aligned_cols=313 Identities=19% Similarity=0.274 Sum_probs=251.1
Q ss_pred CCCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCc
Q 007219 1 MSLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLK 80 (612)
Q Consensus 1 l~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 80 (612)
|||+++ .+..+|.+..+++|++|++++|.. ..+++ ++.+++|++|++++| .++.++....+++|++|++++|. +.
T Consensus 73 L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~ 147 (466)
T 1o6v_A 73 INFSNN-QLTDITPLKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-IS 147 (466)
T ss_dssp EECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-EC
T ss_pred EECCCC-ccCCchhhhccccCCEEECCCCcc-ccChh-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cC
Confidence 578887 478888899999999999999754 45554 999999999999996 56677763449999999999987 44
Q ss_pred ccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcc
Q 007219 81 KFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESM 160 (612)
Q Consensus 81 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l 160 (612)
.++. ++.+++|++|+++ +.+..++. +.++++|+.|++++|.. ..++ .+..+++|++|++++|......| ++.+
T Consensus 148 ~~~~-~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l 220 (466)
T 1o6v_A 148 DISA-LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATNNQISDITP--LGIL 220 (466)
T ss_dssp CCGG-GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred CChh-hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecCCccccccc--cccc
Confidence 5554 8899999999996 56666654 88999999999999874 4454 48899999999999996555444 7889
Q ss_pred ccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEecc
Q 007219 161 EQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDIS 240 (612)
Q Consensus 161 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~ 240 (612)
++|++|++++|.+..++ .+..+++|+.|++++|......+ +..+++|+.|++++|...+..+ +..+++|+.|+++
T Consensus 221 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 99999999999999885 58899999999999998665444 8899999999999997665433 8889999999999
Q ss_pred CCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccch
Q 007219 241 GCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPA 320 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~ 320 (612)
+|.... ++.+..+++|+.|++++|++.+ ++. +..+++|+.|++++|.++.++
T Consensus 296 ~n~l~~------------------------~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~- 347 (466)
T 1o6v_A 296 ENQLED------------------------ISPISNLKNLTYLTLYFNNISD--ISP-VSSLTKLQRLFFYNNKVSDVS- 347 (466)
T ss_dssp SSCCSC------------------------CGGGGGCTTCSEEECCSSCCSC--CGG-GGGCTTCCEEECCSSCCCCCG-
T ss_pred CCcccC------------------------chhhcCCCCCCEEECcCCcCCC--chh-hccCccCCEeECCCCccCCch-
Confidence 986332 2235678899999999999864 332 778999999999999998875
Q ss_pred hhhccccccccccccccccccCC-CCCCCccEEeccCCC
Q 007219 321 SIIHLSKLGKMVLEDCKRLQSLP-QPPPSIVSIRVDGCT 358 (612)
Q Consensus 321 ~i~~L~~L~~L~l~~c~~L~~lp-~lp~sL~~L~i~~C~ 358 (612)
.+..+++|+.|++++|......| .-.++|+.|++.+|+
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 78899999999999986544333 113556666666653
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.9e-26 Score=254.14 Aligned_cols=293 Identities=19% Similarity=0.172 Sum_probs=241.9
Q ss_pred CCCCcCCccCCC--CCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCcc-C-CCCccEEEccCCcC
Q 007219 3 LKHSENLIRTPD--FSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKI-F-MKSLETLVLSGCLK 78 (612)
Q Consensus 3 Ls~~~~L~~~p~--l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~-~-l~~L~~L~L~~c~~ 78 (612)
++++ .+..+|. |+.+++|++|+|++|......+..++.+++|++|+|++|. +..+|... . +++|++|+|++|..
T Consensus 58 l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 58 FKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp ESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 4444 3566776 6789999999999976544444589999999999999965 66666544 4 99999999999974
Q ss_pred CcccC-ccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhh
Q 007219 79 LKKFP-DIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEI 156 (612)
Q Consensus 79 l~~~p-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~ 156 (612)
. .+| ..++++++|++|++++|.+..++. .++.+++|+.|++++|... .++ +..+++|+.|++++|... .
T Consensus 136 ~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~-~---- 206 (597)
T 3oja_B 136 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-T---- 206 (597)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCS-E----
T ss_pred C-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCccc-c----
Confidence 4 555 456899999999999999997764 6899999999999998743 333 667899999999998433 2
Q ss_pred hhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcE
Q 007219 157 VESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEV 236 (612)
Q Consensus 157 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 236 (612)
+....+|++|++++|.+..+|..+ .++|+.|++++|.... +..+..+++|+.|++++|...+..|..++.+++|+.
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 335578999999999999877654 4789999999998765 467889999999999999999888999999999999
Q ss_pred EeccCCCCCcccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCc
Q 007219 237 LDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSF 315 (612)
Q Consensus 237 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l 315 (612)
|++++|.... +|. +..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+
T Consensus 283 L~Ls~N~l~~------------------------l~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 283 LYISNNRLVA------------------------LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECTTSCCCE------------------------EECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCCCCC------------------------CCcccccCCCCcEEECCCCCCC--ccCcccccCCCCCEEECCCCCC
Confidence 9999986432 122 456789999999999996 4898899999999999999999
Q ss_pred cccchhhhccccccccccccccc
Q 007219 316 VSLPASIIHLSKLGKMVLEDCKR 338 (612)
Q Consensus 316 ~~lp~~i~~L~~L~~L~l~~c~~ 338 (612)
+.+| +..+++|+.|++++|+.
T Consensus 337 ~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 337 VTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCCC--CCTTCCCSEEECCSSCE
T ss_pred CCcC--hhhcCCCCEEEeeCCCC
Confidence 9886 67889999999998753
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.9e-25 Score=240.71 Aligned_cols=309 Identities=17% Similarity=0.081 Sum_probs=205.3
Q ss_pred CCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCC
Q 007219 13 PDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECL 92 (612)
Q Consensus 13 p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L 92 (612)
+.++.+++|++|++++| .+..+| .++.+++|++|++++| .++.+| ...+++|++|++++|. +..+| ++++++|
T Consensus 36 ~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L 108 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--VTPLTKL 108 (457)
T ss_dssp EEHHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--CTTCTTC
T ss_pred cChhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--cCCCCcC
Confidence 34666788888888886 444555 6888888888888885 466665 2238888888888877 44444 7788888
Q ss_pred CeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcC
Q 007219 93 QELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTA 172 (612)
Q Consensus 93 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~ 172 (612)
++|++++|.++.+| ++.+++|+.|++++|.... ++ ++.+++|++|++++|..++.+ .+..+++|++|++++|.
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 88888888888876 7888888888888876433 43 777888888888888766666 36778888888888888
Q ss_pred CCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCccc
Q 007219 173 IRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWF 252 (612)
Q Consensus 173 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 252 (612)
++.+| ++.+++|+.|++++|..... .++.+++|+.|++++|...+ +| ++.+++|+.|++++|.....+....
T Consensus 182 l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 182 ITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp CCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred cceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 88887 77888888888888875543 37788888888888887655 55 7788888888888876332111000
Q ss_pred ccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-ccchhhhcccccccc
Q 007219 253 LHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-SLPASIIHLSKLGKM 331 (612)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~L~~L~~L 331 (612)
.....+ --...+|+.|++++|... +.+| .+.+++|+.|+|++|.+. .+|. ...+|+.|
T Consensus 254 ~~L~~L---------------~l~~n~L~~L~l~~n~~~-~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L 312 (457)
T 3bz5_A 254 SKLTTL---------------HCIQTDLLEIDLTHNTQL-IYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITEL 312 (457)
T ss_dssp TTCCEE---------------ECTTCCCSCCCCTTCTTC-CEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCC
T ss_pred CCCCEE---------------eccCCCCCEEECCCCccC-Cccc--ccccccCCEEECCCCcccceecc---CCCcceEe
Confidence 000000 001124555556655543 2333 355677777777777643 5553 23445555
Q ss_pred ccccccccccCCCCCCCccEEeccCCCCcceec
Q 007219 332 VLEDCKRLQSLPQPPPSIVSIRVDGCTSLETIS 364 (612)
Q Consensus 332 ~l~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~ 364 (612)
++++|+.|+.+.---..+..+++.+|++|+.+.
T Consensus 313 ~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~ 345 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNTELTELDVSHNTKLKSLS 345 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEE
T ss_pred chhhcccCCEEECCCCcccccccccCCcCcEEE
Confidence 555555555443323334444556666666654
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3e-25 Score=239.16 Aligned_cols=293 Identities=18% Similarity=0.121 Sum_probs=231.5
Q ss_pred ccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCc
Q 007219 21 LEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGT 100 (612)
Q Consensus 21 L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~ 100 (612)
++......+......+.+++.+++|++|++++| .++.+|....+++|++|++++|. +..+| ++.+++|++|++++|
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSN 95 (457)
T ss_dssp HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS
T ss_pred HHHHHHHhcCcCcccccChhHcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCC
Confidence 333333333333344457889999999999995 66777743339999999999987 55555 889999999999999
Q ss_pred CCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCc-CCCCCChh
Q 007219 101 DIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGT-AIRGLPAS 179 (612)
Q Consensus 101 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~-~i~~lp~~ 179 (612)
.++.++ ++.+++|++|++++|.. ..+| ++.+++|++|++++|.... ++ ++.+++|++|++++| .+..+ .
T Consensus 96 ~l~~~~--~~~l~~L~~L~L~~N~l-~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 96 KLTNLD--VTPLTKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECCSSCC-SCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--C
T ss_pred CCceee--cCCCCcCCEEECCCCcC-Ceec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--c
Confidence 999986 88999999999999864 4454 8899999999999995444 43 788999999999999 55556 4
Q ss_pred hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCccccccccee
Q 007219 180 IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITL 259 (612)
Q Consensus 180 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 259 (612)
++.+++|+.|++++|.... +| +..+++|+.|++++|...+. .++.+++|+.|++++|....
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~------------- 226 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE------------- 226 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-------------
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-------------
Confidence 7789999999999997554 55 88999999999999976654 38889999999999986322
Q ss_pred cccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-----------ccchhhhccccc
Q 007219 260 IRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-----------SLPASIIHLSKL 328 (612)
Q Consensus 260 ~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-----------~lp~~i~~L~~L 328 (612)
+| +..+++|+.|++++|.+.. +| ++.+++|+.|++++|++. .+| +..+++|
T Consensus 227 -----------ip-~~~l~~L~~L~l~~N~l~~--~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 227 -----------ID-VTPLTQLTYFDCSVNPLTE--LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp -----------CC-CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred -----------cC-ccccCCCCEEEeeCCcCCC--cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccC
Confidence 23 6678899999999999864 33 345566655555554443 344 4578999
Q ss_pred cccccccccccccCCCCCCCccEEeccCCCCcceec
Q 007219 329 GKMVLEDCKRLQSLPQPPPSIVSIRVDGCTSLETIS 364 (612)
Q Consensus 329 ~~L~l~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~ 364 (612)
+.|++++|..+..+|.-.++|+.|++.+|++|+.+.
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred CEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 999999999999998877889999999999999886
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=3e-25 Score=229.35 Aligned_cols=284 Identities=17% Similarity=0.169 Sum_probs=187.8
Q ss_pred CccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCC-ccC-CCCccEEEccCCcCCcccCccccCCCCCCeeec
Q 007219 20 NLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPA-KIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHL 97 (612)
Q Consensus 20 ~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L 97 (612)
+++.++++++ .+..+|..+. ++|++|++++|. ++.++. .+. +++|++|++++|......|..++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777877764 4556666553 678888888754 455543 343 778888888887755555677778888888888
Q ss_pred CCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCC--ccchhhhhccccccEEEccCcCCCC
Q 007219 98 DGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKL--REFPEIVESMEQLLELHLEGTAIRG 175 (612)
Q Consensus 98 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l--~~~p~~l~~l~~L~~L~L~~~~i~~ 175 (612)
++|.++.+|..+. ++|++|++++|......+..+..+++|++|++++|... ...+..+..+ +|++|++++|.++.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 8888887776654 67888888877654433344677788888888777553 2455566666 77888888887777
Q ss_pred CChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccc
Q 007219 176 LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHF 255 (612)
Q Consensus 176 lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 255 (612)
+|..+. ++|+.|++++|......+..+..+++|+.|++++|...+..+..++.+++|+.|++++|....
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------- 255 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--------- 255 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB---------
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee---------
Confidence 776554 677777777777666666677777777777777776666656667777777777777765321
Q ss_pred cceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccC------cCCCCEEeccCCCcc---ccchhhhcc
Q 007219 256 PITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGH------LCSLKELYLSRNSFV---SLPASIIHL 325 (612)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~------l~sL~~L~Ls~n~l~---~lp~~i~~L 325 (612)
+|. +..+++|+.|++++|.+.. ..+..+.. ..+|+.|++++|.+. ..|..+..+
T Consensus 256 ---------------lp~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 256 ---------------VPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp ---------------CCTTGGGCTTCCEEECCSSCCCB-CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred ---------------cChhhhcCccCCEEECCCCCCCc-cChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 222 5566777777777777643 11222222 356777777777665 334556667
Q ss_pred cccccccccccc
Q 007219 326 SKLGKMVLEDCK 337 (612)
Q Consensus 326 ~~L~~L~l~~c~ 337 (612)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 777777777664
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3e-26 Score=234.87 Aligned_cols=252 Identities=21% Similarity=0.265 Sum_probs=216.4
Q ss_pred CCccEEEccCCcCCc--ccCccccCCCCCCeeecCC-cCCc-ccccccccCCCCcEEeccCCCCCcccccccccCCCCCE
Q 007219 66 KSLETLVLSGCLKLK--KFPDIVGSMECLQELHLDG-TDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLST 141 (612)
Q Consensus 66 ~~L~~L~L~~c~~l~--~~p~~~~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 141 (612)
.+++.|+|++|...+ .+|..++++++|++|++++ +.+. .+|..++++++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578889998888666 7888888899999999984 7776 78888899999999999988877788888889999999
Q ss_pred EecCCCCCCccchhhhhccccccEEEccCcCCC-CCChhhhccC-CCcEEeecCCCCCCcccccccCCCCCCEEEecCCC
Q 007219 142 LNLSGLWKLREFPEIVESMEQLLELHLEGTAIR-GLPASIEFLS-GLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCS 219 (612)
Q Consensus 142 L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 219 (612)
|++++|.....+|..+..+++|++|++++|.+. .+|..++.++ +|+.|++++|...+.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999998777788888999999999999999998 6888998888 999999999988888898888887 9999999998
Q ss_pred CCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccc
Q 007219 220 KLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDI 299 (612)
Q Consensus 220 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l 299 (612)
..+..|..++.+++|+.|++++|.... ..+.+..+++|++|+|++|.+. +.+|..+
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l 264 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF-----------------------DLGKVGLSKNLNGLDLRNNRIY-GTLPQGL 264 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC-----------------------BGGGCCCCTTCCEEECCSSCCE-ECCCGGG
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee-----------------------ecCcccccCCCCEEECcCCccc-CcCChHH
Confidence 888888889999999999999886321 1223566789999999999985 5689999
Q ss_pred cCcCCCCEEeccCCCcc-ccchhhhccccccccccccccccccCC
Q 007219 300 GHLCSLKELYLSRNSFV-SLPASIIHLSKLGKMVLEDCKRLQSLP 343 (612)
Q Consensus 300 ~~l~sL~~L~Ls~n~l~-~lp~~i~~L~~L~~L~l~~c~~L~~lp 343 (612)
..+++|++|+|++|.++ .+|.. .++++|+.|++.+++.+...|
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999999999999998 67765 889999999999998777654
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.2e-24 Score=244.04 Aligned_cols=353 Identities=21% Similarity=0.180 Sum_probs=207.6
Q ss_pred CCCCCCcCCccCC--CCCCCCCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCccCCCcc-C-CCCccEEEccC
Q 007219 1 MSLKHSENLIRTP--DFSRVPNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLRALPAKI-F-MKSLETLVLSG 75 (612)
Q Consensus 1 l~Ls~~~~L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~~lp~~~-~-l~~L~~L~L~~ 75 (612)
||||+. +++.+| +|+++++|++|+|++|. +..+++ +++.+++|++|+|++| .++.+|... . +++|++|+|++
T Consensus 57 LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 57 LDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTT
T ss_pred EEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCC
Confidence 456665 466665 47777777777777753 344443 5677777777777774 456666543 2 77777777777
Q ss_pred CcCCcccCccccCCCCCCeeecCCcCCcc--cccccccCCCCcEEeccCCCCCcccccccccC-----------------
Q 007219 76 CLKLKKFPDIVGSMECLQELHLDGTDIKE--LPLSIELLSGLVRLTLYGCKNFERIPSTISAL----------------- 136 (612)
Q Consensus 76 c~~l~~~p~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l----------------- 136 (612)
|......+..++++++|++|++++|.++. +|..++.+++|++|++++|......+..+..+
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 76433333456777777777777777763 45666777777777777664322111111100
Q ss_pred --------------------------------------------------------------------------------
Q 007219 137 -------------------------------------------------------------------------------- 136 (612)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (612)
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence
Q ss_pred ----------------------------------CCCCEEecCCCCCCccc-------------------hhhhhccccc
Q 007219 137 ----------------------------------KYLSTLNLSGLWKLREF-------------------PEIVESMEQL 163 (612)
Q Consensus 137 ----------------------------------~~L~~L~L~~~~~l~~~-------------------p~~l~~l~~L 163 (612)
..|+.|++.+|...... +.....+++|
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L 373 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 373 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTC
T ss_pred cccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccc
Confidence 01111111111100000 0011134566
Q ss_pred cEEEccCcCCCC---CChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccc-cccCCCCCCcEEec
Q 007219 164 LELHLEGTAIRG---LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVP-ENLGKVESLEVLDI 239 (612)
Q Consensus 164 ~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l 239 (612)
+.|+++.|.+.. .+.....+.+|+.|++..+.... ++..+..+++|+.+++.++......+ ..+..+++|+.+++
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred ccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccc
Confidence 677777766653 45666777888888887765432 34455667777777777665554433 33556667777777
Q ss_pred cCCCCCcccCcccccccce-ecccCCCC-ccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc
Q 007219 240 SGCKGLLQSTSWFLHFPIT-LIRRNSDP-VAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV 316 (612)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~ 316 (612)
+.|.............+.+ ......+. .....|. +..+++|+.|+|++|++. +..|..+..+++|++|+|++|+++
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCC
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEEECCCCcCC
Confidence 6665332211111111111 11111111 1112333 778889999999999885 455777888999999999999998
Q ss_pred ccc-hhhhccccccccccccccccccCCC----CCCCccEEeccCCC
Q 007219 317 SLP-ASIIHLSKLGKMVLEDCKRLQSLPQ----PPPSIVSIRVDGCT 358 (612)
Q Consensus 317 ~lp-~~i~~L~~L~~L~l~~c~~L~~lp~----lp~sL~~L~i~~C~ 358 (612)
.++ ..+..+++|+.|++++|......|. +|++|+.|++++.+
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 775 4678899999999998865444443 45677777776654
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.3e-24 Score=233.88 Aligned_cols=324 Identities=19% Similarity=0.193 Sum_probs=208.2
Q ss_pred CCCCCCcCCccCC-CCCCCCCccEEeccCCCCccccccccccCCCc-------------cEEecCCCCCCccCCCccCCC
Q 007219 1 MSLKHSENLIRTP-DFSRVPNLEQLILEGCTRLHEIHPSLLVHKKL-------------IFLNLKGCTSLRALPAKIFMK 66 (612)
Q Consensus 1 l~Ls~~~~L~~~p-~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L-------------~~L~L~~c~~l~~lp~~~~l~ 66 (612)
|+++++ ++.++| +++.+++|++|++++|.....+|.+++.+.+| +.|++++| .++.+|.. .+
T Consensus 16 L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~--~~ 91 (454)
T 1jl5_A 16 PLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL--PP 91 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC--CT
T ss_pred hhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC--cC
Confidence 356655 578899 59999999999999988777899999988865 99999986 47777763 57
Q ss_pred CccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCC
Q 007219 67 SLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSG 146 (612)
Q Consensus 67 ~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 146 (612)
+|++|++++|.. ..+|.. +++|++|++++|.++.+|.. .++|++|++++|.. ..+| .++.+++|++|++++
T Consensus 92 ~L~~L~l~~n~l-~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 92 HLESLVASCNSL-TELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TCSEEECCSSCC-SSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCS
T ss_pred CCCEEEccCCcC-Cccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCC
Confidence 899999998874 447753 47888999998888877642 26888999988764 4577 488888899999988
Q ss_pred CCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCccccc
Q 007219 147 LWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPE 226 (612)
Q Consensus 147 ~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 226 (612)
|. +..+|.. ..+|++|++++|.+..+| .++.+++|+.|++++|...+ +|.. .++|+.|++++|... .+|.
T Consensus 163 N~-l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~ 232 (454)
T 1jl5_A 163 NS-LKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE 232 (454)
T ss_dssp SC-CSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred Cc-CcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc
Confidence 84 4445543 358888899888888887 57888888888888886543 5433 258888888888554 6774
Q ss_pred ccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCC
Q 007219 227 NLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLK 306 (612)
Q Consensus 227 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~ 306 (612)
++.+++|+.|++++|.....+. ...... ......+.. ..+|. .+++|+.|++++|.+.. +|.. .++|+
T Consensus 233 -~~~l~~L~~L~l~~N~l~~l~~-~~~~L~--~L~l~~N~l-~~l~~--~~~~L~~L~ls~N~l~~--l~~~---~~~L~ 300 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNLLKTLPD-LPPSLE--ALNVRDNYL-TDLPE--LPQSLTFLDVSENIFSG--LSEL---PPNLY 300 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSSCCS-CCTTCC--EEECCSSCC-SCCCC--CCTTCCEEECCSSCCSE--ESCC---CTTCC
T ss_pred -cCCCCCCCEEECCCCcCCcccc-cccccC--EEECCCCcc-cccCc--ccCcCCEEECcCCccCc--ccCc---CCcCC
Confidence 7888888888888876432111 111111 111111111 11332 23667777777777643 2211 24666
Q ss_pred EEeccCCCccccchhhhccccccccccccccccccCCCCCCCccEEeccCCCCcceec
Q 007219 307 ELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQPPPSIVSIRVDGCTSLETIS 364 (612)
Q Consensus 307 ~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~ 364 (612)
.|++++|.++.++.. .++|++|++++|. ++.+|..+++|+.|++++| .++.++
T Consensus 301 ~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N-~l~~lp 353 (454)
T 1jl5_A 301 YLNASSNEIRSLCDL---PPSLEELNVSNNK-LIELPALPPRLERLIASFN-HLAEVP 353 (454)
T ss_dssp EEECCSSCCSEECCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCC
T ss_pred EEECcCCcCCcccCC---cCcCCEEECCCCc-cccccccCCcCCEEECCCC-cccccc
Confidence 777777666654421 1467777777653 4456666677777777665 344444
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.9e-25 Score=225.34 Aligned_cols=175 Identities=32% Similarity=0.473 Sum_probs=97.8
Q ss_pred CCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecC
Q 007219 66 KSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLS 145 (612)
Q Consensus 66 ~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 145 (612)
+.++.|+|++|. +..+|..++++++|++|++++|.++.+|..++.+++|++|++++|... .+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 344444444443 234444444444444444444444444444444444444444444322 444444444445555544
Q ss_pred CCCCCccchhhh---------hccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEec
Q 007219 146 GLWKLREFPEIV---------ESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLS 216 (612)
Q Consensus 146 ~~~~l~~~p~~l---------~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 216 (612)
+|...+.+|..+ ..+++|++|++++|.++.+|..++.+++|+.|++++|... .+|..+..+++|+.|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECc
Confidence 444444444433 3367777777777777777777777777777777776544 455566677777777777
Q ss_pred CCCCCcccccccCCCCCCcEEeccCCC
Q 007219 217 GCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 217 ~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
+|...+.+|..++.+++|+.|++++|.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 777666666665555555555555544
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=6.3e-24 Score=228.67 Aligned_cols=314 Identities=21% Similarity=0.264 Sum_probs=189.7
Q ss_pred CCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcc
Q 007219 2 SLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKK 81 (612)
Q Consensus 2 ~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~ 81 (612)
+|+++ .+..+|+. +++|++|++++|. +..++.. .++|++|++++| .++.+|....+++|++|++++|. +..
T Consensus 97 ~l~~n-~l~~lp~~--~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n-~l~~lp~~~~l~~L~~L~l~~N~-l~~ 167 (454)
T 1jl5_A 97 VASCN-SLTELPEL--PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNNS-LKK 167 (454)
T ss_dssp ECCSS-CCSSCCCC--CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSC
T ss_pred EccCC-cCCccccc--cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCC-CCCCCcccCCCCCCCEEECCCCc-Ccc
Confidence 45544 35556643 4778888888753 3344321 268999999986 56678853339999999999986 555
Q ss_pred cCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccc
Q 007219 82 FPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESME 161 (612)
Q Consensus 82 ~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~ 161 (612)
+|... .+|++|++++|.++.+| .++.+++|+.|++++|.. ..+|.. .++|++|++++|.. ..+|. ++.++
T Consensus 168 lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~n~l-~~lp~-~~~l~ 237 (454)
T 1jl5_A 168 LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPDL---PLSLESIVAGNNIL-EELPE-LQNLP 237 (454)
T ss_dssp CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCCC---CTTCCEEECCSSCC-SSCCC-CTTCT
T ss_pred cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCCC---cCcccEEECcCCcC-Ccccc-cCCCC
Confidence 77543 58999999999999988 589999999999999864 345543 35899999999954 47774 88999
Q ss_pred cccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccC
Q 007219 162 QLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISG 241 (612)
Q Consensus 162 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~ 241 (612)
+|++|++++|.+..+|.. +++|+.|++++|...+ +|.. +++|+.|++++|...+ +|.. .++|+.|++++
T Consensus 238 ~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~ 306 (454)
T 1jl5_A 238 FLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASS 306 (454)
T ss_dssp TCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCS
T ss_pred CCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcC
Confidence 999999999999988864 4789999999987544 6643 4789999999987554 3321 26888899888
Q ss_pred CCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccc---c
Q 007219 242 CKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVS---L 318 (612)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~---l 318 (612)
|...... ...... .......+... .+|. .+++|+.|++++|.+.. +|. .+++|++|++++|.++. +
T Consensus 307 N~l~~i~-~~~~~L--~~L~Ls~N~l~-~lp~--~~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~l~~i 375 (454)
T 1jl5_A 307 NEIRSLC-DLPPSL--EELNVSNNKLI-ELPA--LPPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLREFPDI 375 (454)
T ss_dssp SCCSEEC-CCCTTC--CEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCC
T ss_pred CcCCccc-CCcCcC--CEEECCCCccc-cccc--cCCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCcCCCC
Confidence 7633210 000000 00111111111 1222 24566667776666642 554 35666777777766654 4
Q ss_pred chhhhcc-------------ccccccccccccccccCCCCCCCccEEeccCC
Q 007219 319 PASIIHL-------------SKLGKMVLEDCKRLQSLPQPPPSIVSIRVDGC 357 (612)
Q Consensus 319 p~~i~~L-------------~~L~~L~l~~c~~L~~lp~lp~sL~~L~i~~C 357 (612)
|.++..+ ++|+.|+++++. ++.+|.+|++++.|.+.+|
T Consensus 376 p~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 376 PESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVEDLRMNSE 426 (454)
T ss_dssp CTTCCEEECCC-----------------------------------------
T ss_pred hHHHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhhHhheeCcCc
Confidence 4555555 445555555532 3334444555555544443
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=6.6e-25 Score=224.85 Aligned_cols=223 Identities=20% Similarity=0.253 Sum_probs=186.4
Q ss_pred CCccEEeccCCCCcc--ccccccccCCCccEEecCC-CCCCccCCCccC-CCCccEEEccCCcCCcccCccccCCCCCCe
Q 007219 19 PNLEQLILEGCTRLH--EIHPSLLVHKKLIFLNLKG-CTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQE 94 (612)
Q Consensus 19 ~~L~~L~L~~c~~l~--~i~~si~~l~~L~~L~L~~-c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~ 94 (612)
.++++|+|+++.... .+|..++.+++|++|++++ +.....+|..+. +++|++|++++|...+.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578899999877666 7888899999999999985 444456777666 899999999998866688888889999999
Q ss_pred eecCCcCCc-ccccccccCCCCcEEeccCCCCCcccccccccCC-CCCEEecCCCCCCccchhhhhccccccEEEccCcC
Q 007219 95 LHLDGTDIK-ELPLSIELLSGLVRLTLYGCKNFERIPSTISALK-YLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTA 172 (612)
Q Consensus 95 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~ 172 (612)
|++++|.+. .+|..+..+++|++|++++|.....+|..+..++ +|++|++++|...+.+|..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999988 7888888999999999998887668888888887 899999998877777888888887 9999999988
Q ss_pred CCC-CChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 173 IRG-LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 173 i~~-lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
+.. +|..+..+++|+.|++++|.....+|. +..+++|++|++++|...+.+|..++.+++|+.|++++|.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 874 667788888999999988877665554 7788889999999888887888888888888888888876
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.8e-24 Score=221.66 Aligned_cols=202 Identities=26% Similarity=0.520 Sum_probs=181.4
Q ss_pred cCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEe
Q 007219 41 VHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLT 119 (612)
Q Consensus 41 ~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 119 (612)
...+++.|+++++ .++.+|..+. +++|++|+|++|... .+|..++++++|++|++++|.++.+|..+..+++|++|+
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 3578999999984 5668888776 899999999998744 889889999999999999999999999999999999999
Q ss_pred ccCCCCCccccccccc---------CCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEe
Q 007219 120 LYGCKNFERIPSTISA---------LKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLN 190 (612)
Q Consensus 120 L~~~~~l~~lp~~l~~---------l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 190 (612)
+++|.....+|..+.. +++|++|++++|. +..+|..+..+++|++|++++|.+..+|..++.+++|+.|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 9999888888887664 9999999999995 44889999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCC
Q 007219 191 LKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGL 245 (612)
Q Consensus 191 L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 245 (612)
+++|...+.+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|...
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 9999999999999999999999999999999999998888888888888887643
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=3.7e-23 Score=213.42 Aligned_cols=264 Identities=17% Similarity=0.203 Sum_probs=215.5
Q ss_pred CCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccc-ccccccCCCCcEEecc
Q 007219 43 KKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKEL-PLSIELLSGLVRLTLY 121 (612)
Q Consensus 43 ~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 121 (612)
.+|+.+++++ ..++.+|..+ .++|++|++++|......+..++++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 31 c~l~~l~~~~-~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSD-LGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTT-SCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecC-CCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3788999988 4577888754 58999999999985555555789999999999999999987 7889999999999999
Q ss_pred CCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCC---CChhhhccCCCcEEeecCCCCCC
Q 007219 122 GCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRG---LPASIEFLSGLVLLNLKDCKNLK 198 (612)
Q Consensus 122 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~c~~l~ 198 (612)
+|. +..+|..+. ++|++|++++|......+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|...
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 986 457776654 799999999997777677889999999999999999873 5678899999999999998754
Q ss_pred cccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCC
Q 007219 199 SLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLY 278 (612)
Q Consensus 199 ~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 278 (612)
.+|..+. ++|++|++++|...+..+..++.+++|+.|++++|...... ...+..++
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------~~~~~~l~ 240 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD----------------------NGSLANTP 240 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC----------------------TTTGGGST
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC----------------------hhhccCCC
Confidence 5665553 89999999999887777888999999999999988643210 11256778
Q ss_pred cccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhh-------ccccccccccccccc
Q 007219 279 CLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASII-------HLSKLGKMVLEDCKR 338 (612)
Q Consensus 279 ~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~-------~L~~L~~L~l~~c~~ 338 (612)
+|+.|+|++|.+. .+|..+..+++|++|+|++|.++.+|.... ....|+.|++.+++.
T Consensus 241 ~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 241 HLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 9999999999986 488889999999999999999998875422 235667777776653
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.4e-23 Score=216.74 Aligned_cols=262 Identities=19% Similarity=0.209 Sum_probs=186.1
Q ss_pred CCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccc-ccccccCCCCcEEecc
Q 007219 43 KKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKEL-PLSIELLSGLVRLTLY 121 (612)
Q Consensus 43 ~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 121 (612)
.+|+.++++++ .++.+|..+ .++|++|++++|......|..+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 33 c~l~~l~~~~~-~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSS-CCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCC-CccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 36888998884 567888755 57899999999875555566788999999999999999877 6778889999999998
Q ss_pred CCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCC---CChhhhccCCCcEEeecCCCCCC
Q 007219 122 GCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRG---LPASIEFLSGLVLLNLKDCKNLK 198 (612)
Q Consensus 122 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~c~~l~ 198 (612)
+|.. ..+|..+. ++|++|++++|......+..+..+++|++|++++|.+.. .|..+..+ +|+.|++++|...
T Consensus 111 ~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 8764 46666554 788888888886555455567888888888888888763 45555666 7888888887643
Q ss_pred cccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCC
Q 007219 199 SLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLY 278 (612)
Q Consensus 199 ~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 278 (612)
.+|..+. ++|++|++++|...+..+..+..+++|+.|++++|...... ...+..++
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~ 241 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE----------------------NGSLSFLP 241 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC----------------------TTGGGGCT
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC----------------------hhHhhCCC
Confidence 3555443 67888888887766666667777777777777776532200 00145566
Q ss_pred cccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchh-hhc------ccccccccccccc
Q 007219 279 CLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPAS-IIH------LSKLGKMVLEDCK 337 (612)
Q Consensus 279 ~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~------L~~L~~L~l~~c~ 337 (612)
+|+.|++++|++. .+|..+..+++|+.|++++|.++.+|.. +.. ...|+.|++.+++
T Consensus 242 ~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 242 TLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 7777777777775 3777777777777777777777766543 221 2455666666654
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=8e-23 Score=229.23 Aligned_cols=346 Identities=22% Similarity=0.215 Sum_probs=228.0
Q ss_pred cCCccCCCCCCC-CCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCccc
Q 007219 7 ENLIRTPDFSRV-PNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKF 82 (612)
Q Consensus 7 ~~L~~~p~l~~l-~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~ 82 (612)
++|+++|. .+ +++++|+|+++ .+..+++ ++..+++|++|+|++| .++.+|...+ +++|++|+|++|. ++.+
T Consensus 41 ~~l~~vP~--~lp~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l 115 (635)
T 4g8a_A 41 LNFYKIPD--NLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSL 115 (635)
T ss_dssp SCCSSCCS--SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEE
T ss_pred CCcCccCC--CCCcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCC
Confidence 47888984 34 47999999995 4666664 7999999999999996 5777876543 9999999999997 5555
Q ss_pred C-ccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCc-ccccccccCCCCCEEecCCCCCCccchhhhhc
Q 007219 83 P-DIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFE-RIPSTISALKYLSTLNLSGLWKLREFPEIVES 159 (612)
Q Consensus 83 p-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~ 159 (612)
| ..+.++++|++|++++|.++.+|. .++++++|++|++++|.... ..|..+..+++|++|++++|...+..+..+..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 5 678999999999999999999886 48999999999999987643 56778899999999999998655544544443
Q ss_pred ccccc----EEEccCcCCCCCCh---------------------------------------------------------
Q 007219 160 MEQLL----ELHLEGTAIRGLPA--------------------------------------------------------- 178 (612)
Q Consensus 160 l~~L~----~L~L~~~~i~~lp~--------------------------------------------------------- 178 (612)
+.+++ .++++.+.+..++.
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 33222 22222222211100
Q ss_pred -----------------------------------------------hhhccCCCcEEeecCCCCCCcc-----------
Q 007219 179 -----------------------------------------------SIEFLSGLVLLNLKDCKNLKSL----------- 200 (612)
Q Consensus 179 -----------------------------------------------~i~~l~~L~~L~L~~c~~l~~l----------- 200 (612)
.+.....|+.|++.+|......
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 0112234555555554322111
Q ss_pred --------cccccCCCCCCEEEecCCCCCc--ccccccCCCCCCcEEeccCCCC-----------------------Ccc
Q 007219 201 --------PRTINGLRSLKTLHLSGCSKLK--NVPENLGKVESLEVLDISGCKG-----------------------LLQ 247 (612)
Q Consensus 201 --------p~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~l~~~~~-----------------------~~~ 247 (612)
+.....+++|+.|+++++.... ..+.....+.+|+.+++..+.. ...
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc
Confidence 1112346778888888776532 2233333444555555444331 110
Q ss_pred c-Ccccccccc-eecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcccc-chhhh
Q 007219 248 S-TSWFLHFPI-TLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSL-PASII 323 (612)
Q Consensus 248 ~-~~~~~~~~~-~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~l-p~~i~ 323 (612)
. ...+..... .......+......+. +..+++|+.|++++|+..+...|..+..+++|++|+|++|+++.+ |..+.
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 0 000111111 1111122222222233 677889999999999866566788889999999999999999966 56789
Q ss_pred ccccccccccccccccccCCCC----CCCccEEeccCCC
Q 007219 324 HLSKLGKMVLEDCKRLQSLPQP----PPSIVSIRVDGCT 358 (612)
Q Consensus 324 ~L~~L~~L~l~~c~~L~~lp~l----p~sL~~L~i~~C~ 358 (612)
++++|++|++++|+ ++.++.. .++|+.|+++++.
T Consensus 516 ~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 516 SLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp TCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCc
Confidence 99999999999974 5555432 3688899988764
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=4.6e-22 Score=202.84 Aligned_cols=237 Identities=23% Similarity=0.234 Sum_probs=143.4
Q ss_pred CCccCCCccCCCCccEEEccCCcCCcccCc-cccCCCCCCeeecCCcCCccc---ccccccCCCCcEEeccCCCCCcccc
Q 007219 55 SLRALPAKIFMKSLETLVLSGCLKLKKFPD-IVGSMECLQELHLDGTDIKEL---PLSIELLSGLVRLTLYGCKNFERIP 130 (612)
Q Consensus 55 ~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~-~~~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp 130 (612)
.++.+|..+ .++|++|++++|. ++.+|. .+.++++|++|++++|.++.+ |..+..+++|++|++++|. +..+|
T Consensus 18 ~l~~ip~~~-~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~ 94 (306)
T 2z66_A 18 GLTSVPTGI-PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS 94 (306)
T ss_dssp CCSSCCSCC-CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEE
T ss_pred CcccCCCCC-CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccCh
Confidence 344444422 2455555555544 223332 245555555555555555533 3444455555555555543 23444
Q ss_pred cccccCCCCCEEecCCCCCCccch-hhhhccccccEEEccCcCCCC-CChhhhccCCCcEEeecCCCCCC-cccccccCC
Q 007219 131 STISALKYLSTLNLSGLWKLREFP-EIVESMEQLLELHLEGTAIRG-LPASIEFLSGLVLLNLKDCKNLK-SLPRTINGL 207 (612)
Q Consensus 131 ~~l~~l~~L~~L~L~~~~~l~~~p-~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~-~lp~~i~~l 207 (612)
..+..+++|++|++++|......+ ..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.... .+|..+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 445555566666665553322222 345566666666666666654 34456666777777777766554 466667777
Q ss_pred CCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccC
Q 007219 208 RSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISD 287 (612)
Q Consensus 208 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 287 (612)
++|+.|++++|...+..|..++.+++|+.|++++|...... ...+..+++|+.|+|++
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----------------------TFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC----------------------SGGGTTCTTCCEEECTT
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC----------------------hhhccCcccCCEeECCC
Confidence 77777777777766666777777788888888777632200 01155678899999999
Q ss_pred CCCCCCCCCccccCc-CCCCEEeccCCCccc
Q 007219 288 CNLGEGAIPSDIGHL-CSLKELYLSRNSFVS 317 (612)
Q Consensus 288 ~~l~~~~ip~~l~~l-~sL~~L~Ls~n~l~~ 317 (612)
|.+. +..|..+..+ ++|++|+|++|.+..
T Consensus 233 N~l~-~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 233 NHIM-TSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCC-BCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCc-ccCHHHHHhhhccCCEEEccCCCeec
Confidence 9885 5567777777 489999999998873
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=4.3e-22 Score=200.97 Aligned_cols=194 Identities=21% Similarity=0.214 Sum_probs=117.3
Q ss_pred cEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccc-ccccccCCCCcEEeccCCC
Q 007219 46 IFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKEL-PLSIELLSGLVRLTLYGCK 124 (612)
Q Consensus 46 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~ 124 (612)
+.++.++ ..++.+|..+ .++|++|++++|......+..+.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~-~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCS-SCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCc-CCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4555554 4566666533 56777777777764444445677777777777777777766 5567777777777777776
Q ss_pred CCccc-ccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChh-hhccCCCcEEeecCCCCCCcccc
Q 007219 125 NFERI-PSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPAS-IEFLSGLVLLNLKDCKNLKSLPR 202 (612)
Q Consensus 125 ~l~~l-p~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~ 202 (612)
.+..+ |..+..+++|++|++++|......|..+..+++|++|++++|.+..++.. ++.+++|+.|++++|......+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 44444 45566677777777777755555556666667777777777766665543 55666666666666544333333
Q ss_pred cccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccC
Q 007219 203 TINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISG 241 (612)
Q Consensus 203 ~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~ 241 (612)
.+..+++|+.|++++|...+..|..++.+++|+.|++++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 455555555555555554444444444444444444433
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3.2e-21 Score=214.26 Aligned_cols=257 Identities=27% Similarity=0.304 Sum_probs=170.8
Q ss_pred CccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCC
Q 007219 20 NLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDG 99 (612)
Q Consensus 20 ~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~ 99 (612)
+++.|++++ ..+..+|..+. ++|++|++++| .++.+|. .+++|++|+|++|. +..+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~-n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGE-SGLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCS-SCCSCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecC-CCcCccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 467777776 34556666554 67777777775 4566666 46777777777776 455665 567777777777
Q ss_pred cCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChh
Q 007219 100 TDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPAS 179 (612)
Q Consensus 100 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~ 179 (612)
|.++.+|. .+.+|+.|++++|. +..+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.++.+|
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCCCc--
Confidence 77777776 56677777777765 4445553 4677777777773 334443 3466777777777777777
Q ss_pred hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCccccccccee
Q 007219 180 IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITL 259 (612)
Q Consensus 180 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 259 (612)
..+++|+.|++++|... .+|. .+++|+.|++++|... .+|.. +++|+.|++++|....
T Consensus 178 -~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~------------- 235 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS------------- 235 (622)
T ss_dssp -CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-------------
T ss_pred -ccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-------------
Confidence 44677777777777543 3443 2467777777776543 44432 4677777777765221
Q ss_pred cccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhcccccccccccccccc
Q 007219 260 IRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRL 339 (612)
Q Consensus 260 ~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L 339 (612)
+| ..+++|+.|+|++|.+.. +|. .+++|+.|+|++|.++.+|..+.++++|+.|++++|+.-
T Consensus 236 -----------lp--~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 236 -----------LP--VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -----------CC--CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred -----------CC--CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 12 234667777777777753 555 567777788887777777777777777777777777543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=2.7e-22 Score=204.58 Aligned_cols=244 Identities=20% Similarity=0.215 Sum_probs=180.4
Q ss_pred cEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCc--ccCccccCCCCCCeeec
Q 007219 22 EQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLK--KFPDIVGSMECLQELHL 97 (612)
Q Consensus 22 ~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~--~~p~~~~~l~~L~~L~L 97 (612)
+.++.++ ..+..+|..+ .++|++|++++| .++.+|.... +++|++|++++|.... ..|..+..+++|++|++
T Consensus 10 ~~l~c~~-~~l~~ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNS-KGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCS-SCCSSCCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCC-CCcccCCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4566655 4566666544 367888888874 4567776542 7888888888876432 22455667888888888
Q ss_pred CCcCCcccccccccCCCCcEEeccCCCCCcccc-cccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCC-
Q 007219 98 DGTDIKELPLSIELLSGLVRLTLYGCKNFERIP-STISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRG- 175 (612)
Q Consensus 98 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~- 175 (612)
++|.+..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 888888888888888888888888876433222 357788888888888887666677778888888888888888875
Q ss_pred -CChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCccccc
Q 007219 176 -LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLH 254 (612)
Q Consensus 176 -lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 254 (612)
+|..+..+++|+.|++++|......|..+..+++|++|++++|...+..+..+..+++|+.|++++|......
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------ 239 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK------ 239 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS------
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC------
Confidence 7888888888999999888877766788888889999999988877666667888899999999888643211
Q ss_pred ccceecccCCCCccccCCCCCCC-CcccEEeccCCCCC
Q 007219 255 FPITLIRRNSDPVAWRFPSLSGL-YCLRKLDISDCNLG 291 (612)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~Ls~~~l~ 291 (612)
...+..+ ++|+.|+|++|.+.
T Consensus 240 ----------------~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 240 ----------------KQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ----------------SSSCCCCCTTCCEEECTTCCEE
T ss_pred ----------------HHHHHhhhccCCEEEccCCCee
Confidence 1124455 48999999999874
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=210.65 Aligned_cols=175 Identities=18% Similarity=0.208 Sum_probs=86.1
Q ss_pred CccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCC
Q 007219 44 KLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGC 123 (612)
Q Consensus 44 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 123 (612)
...+.+.++ ..++.+|..+ .++|++|++++|......+..+.++++|++|++++|.++.++
T Consensus 32 ~~~~c~~~~-~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------- 92 (353)
T 2z80_A 32 RNGICKGSS-GSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE----------------- 92 (353)
T ss_dssp TTSEEECCS-TTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-----------------
T ss_pred CCeEeeCCC-CCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-----------------
Confidence 333444444 3455555433 345555555555432222234555555555555555555442
Q ss_pred CCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCCh--hhhccCCCcEEeecCCCCCCcc-
Q 007219 124 KNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPA--SIEFLSGLVLLNLKDCKNLKSL- 200 (612)
Q Consensus 124 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l- 200 (612)
|..+..+++|++|++++|......+..+..+++|++|++++|.+..+|. .+..+++|+.|++++|.....+
T Consensus 93 ------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 93 ------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred ------HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 3334444445555554443322222334555555555555555555544 4455555555555555433333
Q ss_pred cccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 201 PRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 201 p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
+..+..+++|++|++++|...+..|..++.+++|+.|++++|.
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 3345555555555555555555445555555555555555554
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=2.1e-24 Score=232.98 Aligned_cols=339 Identities=21% Similarity=0.221 Sum_probs=233.0
Q ss_pred CCCCCCcCCccCC--C-CCCCCCccEEeccCCCCcc----ccccccccCCCccEEecCCCCCCcc-CCCccC--CC----
Q 007219 1 MSLKHSENLIRTP--D-FSRVPNLEQLILEGCTRLH----EIHPSLLVHKKLIFLNLKGCTSLRA-LPAKIF--MK---- 66 (612)
Q Consensus 1 l~Ls~~~~L~~~p--~-l~~l~~L~~L~L~~c~~l~----~i~~si~~l~~L~~L~L~~c~~l~~-lp~~~~--l~---- 66 (612)
|||++++ +...+ . +..+++|++|++++|.... .++..+..+++|++|++++|. +.. .+..+. ++
T Consensus 8 L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 8 LDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTC
T ss_pred hhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCC
Confidence 4566553 44332 2 5678999999999987443 456678889999999999965 333 121121 33
Q ss_pred CccEEEccCCcCCc----ccCccccCCCCCCeeecCCcCCccc-cc----c-cccCCCCcEEeccCCCCCc----ccccc
Q 007219 67 SLETLVLSGCLKLK----KFPDIVGSMECLQELHLDGTDIKEL-PL----S-IELLSGLVRLTLYGCKNFE----RIPST 132 (612)
Q Consensus 67 ~L~~L~L~~c~~l~----~~p~~~~~l~~L~~L~L~~~~i~~l-p~----~-i~~l~~L~~L~L~~~~~l~----~lp~~ 132 (612)
+|++|++++|.... .+|..+..+++|++|++++|.+... +. . .....+|++|++++|.... .++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 79999999998553 5688889999999999999998732 22 2 2235689999999997554 34566
Q ss_pred cccCCCCCEEecCCCCCCccchhhhh-----ccccccEEEccCcCCCC-----CChhhhccCCCcEEeecCCCCCCc---
Q 007219 133 ISALKYLSTLNLSGLWKLREFPEIVE-----SMEQLLELHLEGTAIRG-----LPASIEFLSGLVLLNLKDCKNLKS--- 199 (612)
Q Consensus 133 l~~l~~L~~L~L~~~~~l~~~p~~l~-----~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~--- 199 (612)
+..+++|++|++++|......+..+. ..++|++|++++|.+.. ++..+..+++|+.|++++|.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 77789999999999975444333333 35699999999999986 577888999999999999975432
Q ss_pred -c-cccccCCCCCCEEEecCCCCCcc----cccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCC
Q 007219 200 -L-PRTINGLRSLKTLHLSGCSKLKN----VPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS 273 (612)
Q Consensus 200 -l-p~~i~~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (612)
+ +.....+++|++|++++|..... ++..+..+++|+.|++++|............. +
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---------------l-- 308 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET---------------L-- 308 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH---------------H--
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH---------------h--
Confidence 2 22234689999999999976554 67778889999999999986321100000000 0
Q ss_pred CCCCCcccEEeccCCCCCCCC---CCccccCcCCCCEEeccCCCcccc-chhhhc-----cccccccccccccccc----
Q 007219 274 LSGLYCLRKLDISDCNLGEGA---IPSDIGHLCSLKELYLSRNSFVSL-PASIIH-----LSKLGKMVLEDCKRLQ---- 340 (612)
Q Consensus 274 l~~l~~L~~L~Ls~~~l~~~~---ip~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~-----L~~L~~L~l~~c~~L~---- 340 (612)
....++|+.|++++|.+.+.. ++..+..+++|++|+|++|.+... +..+.. .++|++|++++|..-.
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 388 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHH
Confidence 112357888888888775321 345566678888888888877633 233332 5688888888874321
Q ss_pred cCCCC---CCCccEEeccCCC
Q 007219 341 SLPQP---PPSIVSIRVDGCT 358 (612)
Q Consensus 341 ~lp~l---p~sL~~L~i~~C~ 358 (612)
.+|.. .++|++|++++|+
T Consensus 389 ~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 389 SLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHhCCCccEEECCCCC
Confidence 33321 3677888887764
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=6.7e-21 Score=211.71 Aligned_cols=263 Identities=23% Similarity=0.269 Sum_probs=212.9
Q ss_pred CCCCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCc
Q 007219 1 MSLKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLK 80 (612)
Q Consensus 1 l~Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 80 (612)
||++++ +++.+|.-- .++|++|++++|. +..+|. .+++|++|+|++| .++.+|. .+++|++|++++|. +.
T Consensus 45 L~ls~n-~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-l~ 114 (622)
T 3g06_A 45 LNVGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNP-LT 114 (622)
T ss_dssp EECCSS-CCSCCCSCC-CTTCSEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CC
T ss_pred EEecCC-CcCccChhh-CCCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCc-CC
Confidence 467766 588888622 2899999999974 567776 6899999999996 4778887 68999999999986 56
Q ss_pred ccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcc
Q 007219 81 KFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESM 160 (612)
Q Consensus 81 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l 160 (612)
.+|. .+++|++|++++|.++.+|.. +++|++|++++|. +..+|. .+++|+.|++++|. +..+| ..+
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~ 180 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-LTSLP---MLP 180 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCC---CCC
T ss_pred CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-CCCCc---ccC
Confidence 6666 678999999999999999975 4899999999985 455665 35789999999984 55566 567
Q ss_pred ccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEecc
Q 007219 161 EQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDIS 240 (612)
Q Consensus 161 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~ 240 (612)
++|+.|++++|.+..+|.. +++|+.|++.+|... .+|. .+++|+.|++++|... .+| ..+++|+.|+++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVS 249 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECC
Confidence 9999999999999998864 578999999998654 5664 3589999999998654 466 457899999999
Q ss_pred CCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-ccc
Q 007219 241 GCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-SLP 319 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp 319 (612)
+|.... +|. .+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ ..|
T Consensus 250 ~N~L~~------------------------lp~--~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 250 GNRLTS------------------------LPM--LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SSCCSC------------------------CCC--CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCCc------------------------CCc--ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 986332 233 4678999999999996 58999999999999999999998 556
Q ss_pred hhhhccc
Q 007219 320 ASIIHLS 326 (612)
Q Consensus 320 ~~i~~L~ 326 (612)
..+..++
T Consensus 302 ~~l~~L~ 308 (622)
T 3g06_A 302 QALREIT 308 (622)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 6666554
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=7.8e-22 Score=205.47 Aligned_cols=276 Identities=19% Similarity=0.195 Sum_probs=194.6
Q ss_pred CCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCC-ccC-CCCccEEEccCCcCCcccCccccCCCCCCe
Q 007219 17 RVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPA-KIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQE 94 (612)
Q Consensus 17 ~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~ 94 (612)
.++.....+.++ ..+.++|..+. ++|++|++++| .++.+|. .+. +++|++|++++|......|..++++++|++
T Consensus 29 ~C~~~~~c~~~~-~~l~~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSS-GSLNSIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCS-TTCSSCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCC-CCccccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 345555666655 45667776544 47888888875 4556665 333 788888888888755555667888888888
Q ss_pred eecCCcCCcccccc-cccCCCCcEEeccCCCCCccccc--ccccCCCCCEEecCCCCCCccc-hhhhhccccccEEEccC
Q 007219 95 LHLDGTDIKELPLS-IELLSGLVRLTLYGCKNFERIPS--TISALKYLSTLNLSGLWKLREF-PEIVESMEQLLELHLEG 170 (612)
Q Consensus 95 L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~~-p~~l~~l~~L~~L~L~~ 170 (612)
|++++|.++.+|.. ++.+++|++|++++|.. ..+|. .+..+++|++|++++|..+..+ +..+..+++|++|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 88888888888766 77888888888888754 45554 5778888888888888555544 56778888888888888
Q ss_pred cCCCCC-ChhhhccCCCcEEeecCCCCCCccccc-ccCCCCCCEEEecCCCCCccccccc---CCCCCCcEEeccCCCCC
Q 007219 171 TAIRGL-PASIEFLSGLVLLNLKDCKNLKSLPRT-INGLRSLKTLHLSGCSKLKNVPENL---GKVESLEVLDISGCKGL 245 (612)
Q Consensus 171 ~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l---~~l~~L~~L~l~~~~~~ 245 (612)
|.+..+ |..+..+++|+.|++++|.. ..+|.. +..+++|+.|++++|...+..+..+ .....++.+++.++...
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 888864 67788888888888888875 444443 4457888888888887665443332 34567788888776522
Q ss_pred cccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccc-cCcCCCCEEeccCCCccccc
Q 007219 246 LQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDI-GHLCSLKELYLSRNSFVSLP 319 (612)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l-~~l~sL~~L~Ls~n~l~~lp 319 (612)
... ...+|. +..+++|+.|+|++|++. .+|..+ ..+++|++|+|++|.+..-+
T Consensus 263 ~~~-------------------l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 263 DES-------------------LFQVMKLLNQISGLLELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHH-------------------HHHHHHHHHTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred Ccc-------------------hhhhHHHHhcccCCCEEECCCCCCC--ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 100 001122 556788999999999886 477664 78899999999999887444
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=5e-21 Score=205.50 Aligned_cols=215 Identities=20% Similarity=0.201 Sum_probs=102.6
Q ss_pred EEeccCCCCccccccccccCCCccEEecCCCCCCccCCC-ccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCCc
Q 007219 23 QLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPA-KIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGT 100 (612)
Q Consensus 23 ~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~ 100 (612)
.++..+ ..+..+|..+. ++++.|+|++|. ++.++. .+. +++|++|+|++|......+..+.++++|++|+|++|
T Consensus 47 ~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVR-KNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCS-CCCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCC-CCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 344333 33444444332 455555555532 333332 222 555555555555433333344555555555555555
Q ss_pred CCccccc-ccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchh-hhhccccccEEEccCcCCCCCCh
Q 007219 101 DIKELPL-SIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPE-IVESMEQLLELHLEGTAIRGLPA 178 (612)
Q Consensus 101 ~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~-~l~~l~~L~~L~L~~~~i~~lp~ 178 (612)
.++.+|. .+..+++|+.|++++|......+..+..+++|++|++++|..+..++. .+..+++|++|++++|.++.+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 5555543 345555555555555543322223445555555555555444444332 34455555555555555555542
Q ss_pred hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCC
Q 007219 179 SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGC 242 (612)
Q Consensus 179 ~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~ 242 (612)
+..+++|+.|+|++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred -cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 444455555555555444444444445555555555554444444444444444444444444
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=5.9e-21 Score=205.70 Aligned_cols=217 Identities=21% Similarity=0.211 Sum_probs=119.7
Q ss_pred cEEeccCCCCccccccccccCCCccEEecCCCCCCccC-CCccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCC
Q 007219 22 EQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRAL-PAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDG 99 (612)
Q Consensus 22 ~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~l-p~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~ 99 (612)
..++..+ ..+..+|..+. ++|++|+|++|. ++.+ |..+. +++|++|+|++|......|..+.++++|++|+|++
T Consensus 57 ~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTR-RGLSEVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECC-CCcCccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3444443 34445554332 456666666643 3333 22233 66666666666654444445566666666666666
Q ss_pred cCCcccccc-cccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchh-hhhccccccEEEccCcCCCCCC
Q 007219 100 TDIKELPLS-IELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPE-IVESMEQLLELHLEGTAIRGLP 177 (612)
Q Consensus 100 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~-~l~~l~~L~~L~L~~~~i~~lp 177 (612)
|.++.+|.. +..+++|++|++++|......+..+..+++|+.|++++|..++.++. .+..+++|++|++++|.+..+|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 666655543 55566666666666553322233455666666666666555555443 3555666666666666666654
Q ss_pred hhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 178 ASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 178 ~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
. +..+++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|.
T Consensus 213 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred c-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 2 4555566666666655555555555556666666666655555445555555555555555543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=5.9e-21 Score=205.70 Aligned_cols=233 Identities=22% Similarity=0.205 Sum_probs=198.6
Q ss_pred cCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCC-CccC-CCCccEEEccCCcCCcccCc
Q 007219 7 ENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALP-AKIF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 7 ~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
.++..+|. .-.++|++|+|++|......+..++.+++|++|+|++| .+..++ ..+. +++|++|+|++|......+.
T Consensus 64 ~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 64 RGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp SCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 35777875 23478999999997665555678999999999999996 555655 4444 99999999999985555556
Q ss_pred cccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCccccc-ccccCCCCCEEecCCCCCCccchhhhhcccc
Q 007219 85 IVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPS-TISALKYLSTLNLSGLWKLREFPEIVESMEQ 162 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~ 162 (612)
.+.++++|++|+|++|.++.+|. .+..+++|+.|++++|..+..++. .+..+++|+.|++++|. +..+| .+..+++
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~ 219 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVG 219 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTT
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-ccccccc
Confidence 68999999999999999998876 688999999999999888888876 48899999999999995 44555 4788999
Q ss_pred ccEEEccCcCCCCC-ChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccC
Q 007219 163 LLELHLEGTAIRGL-PASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISG 241 (612)
Q Consensus 163 L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~ 241 (612)
|++|++++|.+..+ |..+..+++|+.|++++|......|..+..+++|+.|++++|...+..+..+..+++|+.|++++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 99999999999986 67899999999999999998888888999999999999999987766667788999999999999
Q ss_pred CC
Q 007219 242 CK 243 (612)
Q Consensus 242 ~~ 243 (612)
|+
T Consensus 300 Np 301 (452)
T 3zyi_A 300 NP 301 (452)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.4e-22 Score=207.98 Aligned_cols=241 Identities=17% Similarity=0.073 Sum_probs=144.5
Q ss_pred CCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecC
Q 007219 66 KSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLS 145 (612)
Q Consensus 66 ~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 145 (612)
++|++|++++|......|..+.++++|++|++++|.+..++. +..+++|++|++++|. +..++ ..++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEECC
Confidence 344444444443332223344444445555554444443333 4444455555554443 12221 22455555555
Q ss_pred CCCCCccchhhhhccccccEEEccCcCCCCCCh-hhhccCCCcEEeecCCCCCCcccccc-cCCCCCCEEEecCCCCCcc
Q 007219 146 GLWKLREFPEIVESMEQLLELHLEGTAIRGLPA-SIEFLSGLVLLNLKDCKNLKSLPRTI-NGLRSLKTLHLSGCSKLKN 223 (612)
Q Consensus 146 ~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i-~~l~~L~~L~Ls~c~~l~~ 223 (612)
+|......+. .+++|++|++++|.+..++. .++.+++|+.|++++|......+..+ ..+++|+.|++++|...+.
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 5533222221 24556666666666665433 45556666666666665555444444 3566777777777654333
Q ss_pred cccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcC
Q 007219 224 VPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLC 303 (612)
Q Consensus 224 lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~ 303 (612)
+. ...+++|+.|++++|..... .+.+..+++|+.|+|++|.+.. +|..+..++
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~l-----------------------~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~ 237 (317)
T 3o53_A 185 -KG-QVVFAKLKTLDLSSNKLAFM-----------------------GPEFQSAAGVTWISLRNNKLVL--IEKALRFSQ 237 (317)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCEE-----------------------CGGGGGGTTCSEEECTTSCCCE--ECTTCCCCT
T ss_pred -cc-ccccccCCEEECCCCcCCcc-----------------------hhhhcccCcccEEECcCCcccc--hhhHhhcCC
Confidence 32 23477778888777753220 0125567889999999999864 888899999
Q ss_pred CCCEEeccCCCcc--ccchhhhccccccccccccccccccC
Q 007219 304 SLKELYLSRNSFV--SLPASIIHLSKLGKMVLEDCKRLQSL 342 (612)
Q Consensus 304 sL~~L~Ls~n~l~--~lp~~i~~L~~L~~L~l~~c~~L~~l 342 (612)
+|+.|+|++|.+. .+|..+..+++|+.|++.+++.++..
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 9999999999998 78889999999999999988887764
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=6.1e-21 Score=204.83 Aligned_cols=233 Identities=23% Similarity=0.218 Sum_probs=198.8
Q ss_pred cCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-cC-CCCccEEEccCCcCCcccCc
Q 007219 7 ENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 7 ~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
++|.++|. .-.++++.|+|++|......+..+..+++|++|+|++| .+..++.. +. +++|++|+|++|......+.
T Consensus 53 ~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 53 KNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 35777885 33478999999997655555578999999999999996 46666643 43 89999999999975444445
Q ss_pred cccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCccccc-ccccCCCCCEEecCCCCCCccchhhhhcccc
Q 007219 85 IVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPS-TISALKYLSTLNLSGLWKLREFPEIVESMEQ 162 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~ 162 (612)
.+..+++|++|++++|.++.+|. .+..+++|+.|++++|..+..++. .+..+++|++|++++| .+..+| .+..+++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~ 208 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIK 208 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSS
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcc
Confidence 78999999999999999998876 688999999999999888888776 5889999999999999 455666 4788999
Q ss_pred ccEEEccCcCCCCC-ChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccC
Q 007219 163 LLELHLEGTAIRGL-PASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISG 241 (612)
Q Consensus 163 L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~ 241 (612)
|++|++++|.+..+ |..+..+++|+.|++++|......+..+..+++|+.|+|++|......+..+..+++|+.|++++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 99999999999986 67899999999999999998888888899999999999999987776667789999999999998
Q ss_pred CC
Q 007219 242 CK 243 (612)
Q Consensus 242 ~~ 243 (612)
|+
T Consensus 289 Np 290 (440)
T 3zyj_A 289 NP 290 (440)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=2.5e-22 Score=205.56 Aligned_cols=245 Identities=21% Similarity=0.139 Sum_probs=142.9
Q ss_pred CCCCCccEEeccCCCCccccccccccCCCccEEecCCCCC-CccCCCcc--------CCCCccEEEccCCcCCcccCccc
Q 007219 16 SRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTS-LRALPAKI--------FMKSLETLVLSGCLKLKKFPDIV 86 (612)
Q Consensus 16 ~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~-l~~lp~~~--------~l~~L~~L~L~~c~~l~~~p~~~ 86 (612)
+..++|++|++++|.. .+|..+... |+.|+++++.. -..+|... .+++|++|++++|...+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455566676666554 556555443 66666666432 11234333 26677777777776555666654
Q ss_pred --cCCCCCCeeecCCcCCcccccccccC-----CCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCcc--chhhh
Q 007219 87 --GSMECLQELHLDGTDIKELPLSIELL-----SGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLRE--FPEIV 157 (612)
Q Consensus 87 --~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~--~p~~l 157 (612)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|......|..++.+++|++|++++|...+. ++..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 66777777777777777666666655 6777777777665554446666777777777777654433 23333
Q ss_pred --hccccccEEEccCcCCCCCCh----hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCC
Q 007219 158 --ESMEQLLELHLEGTAIRGLPA----SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKV 231 (612)
Q Consensus 158 --~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l 231 (612)
..+++|++|++++|.+..++. .+..+++|+.|++++|......|. ..+..+
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~~l 252 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----------------------PSCDWP 252 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------------------SCCCCC
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----------------------hhhhhc
Confidence 566666666666666664332 123445555555555544443321 223334
Q ss_pred CCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEec
Q 007219 232 ESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYL 310 (612)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~L 310 (612)
++|+.|++++|.... +|. +. ++|+.|+|++|++.+ +|. +..+++|++|+|
T Consensus 253 ~~L~~L~Ls~N~l~~------------------------ip~~~~--~~L~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQ------------------------VPKGLP--AKLSVLDLSYNRLDR--NPS-PDELPQVGNLSL 303 (312)
T ss_dssp TTCCEEECTTSCCSS------------------------CCSSCC--SEEEEEECCSSCCCS--CCC-TTTSCEEEEEEC
T ss_pred CCCCEEECCCCccCh------------------------hhhhcc--CCceEEECCCCCCCC--Chh-HhhCCCCCEEec
Confidence 455555555443211 111 11 567788888887754 455 777888888888
Q ss_pred cCCCcc
Q 007219 311 SRNSFV 316 (612)
Q Consensus 311 s~n~l~ 316 (612)
++|.++
T Consensus 304 ~~N~l~ 309 (312)
T 1wwl_A 304 KGNPFL 309 (312)
T ss_dssp TTCTTT
T ss_pred cCCCCC
Confidence 888775
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=3.4e-22 Score=204.58 Aligned_cols=242 Identities=21% Similarity=0.195 Sum_probs=175.7
Q ss_pred CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCc--ccccccc-------cCCCCcEEeccCCCCCccccccc--
Q 007219 65 MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIK--ELPLSIE-------LLSGLVRLTLYGCKNFERIPSTI-- 133 (612)
Q Consensus 65 l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~~l~~lp~~l-- 133 (612)
.++|+.|++++|.. .+|..+... |++|+++++.+. .+|..+. .+++|++|++++|.....+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45667777777664 556544433 777777777775 3555444 67788888888877666677765
Q ss_pred ccCCCCCEEecCCCCCCccchhhhhcc-----ccccEEEccCcCCCCCC-hhhhccCCCcEEeecCCCCCCc--ccccc-
Q 007219 134 SALKYLSTLNLSGLWKLREFPEIVESM-----EQLLELHLEGTAIRGLP-ASIEFLSGLVLLNLKDCKNLKS--LPRTI- 204 (612)
Q Consensus 134 ~~l~~L~~L~L~~~~~l~~~p~~l~~l-----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~--lp~~i- 204 (612)
..+++|++|++++|..... |..+..+ ++|++|++++|.+..++ ..++.+++|+.|++++|...+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7788888888888855444 7777766 88888888888888776 6788888899999988886654 34444
Q ss_pred -cCCCCCCEEEecCCCCCc--ccc-cccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcc
Q 007219 205 -NGLRSLKTLHLSGCSKLK--NVP-ENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCL 280 (612)
Q Consensus 205 -~~l~~L~~L~Ls~c~~l~--~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 280 (612)
..+++|++|++++|...+ .++ ..+..+++|+.|++++|...... ..+.+..+++|
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------------~~~~~~~l~~L 255 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---------------------GAPSCDWPSQL 255 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---------------------CCSCCCCCTTC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---------------------chhhhhhcCCC
Confidence 788899999999887652 233 23456788999999888633210 01234557889
Q ss_pred cEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhcccccccccccccc
Q 007219 281 RKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCK 337 (612)
Q Consensus 281 ~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~ 337 (612)
+.|+|++|.+. .+|..+. ++|++|+|++|+++.+|. +..+++|++|++++++
T Consensus 256 ~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 256 NSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 99999999886 4787766 889999999999988876 8888889999888864
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=3.9e-20 Score=186.54 Aligned_cols=218 Identities=20% Similarity=0.194 Sum_probs=170.7
Q ss_pred cEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-cC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCC
Q 007219 22 EQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDG 99 (612)
Q Consensus 22 ~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~ 99 (612)
++++.++ ..+..+|..+ .++|++|+++++ .++.++.. +. +++|++|++++|......|..+.++++|++|++++
T Consensus 14 ~~~~c~~-~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4566654 4566666533 567888888874 45555543 33 78888888888775555577788888888888888
Q ss_pred cC-Cccc-ccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCC
Q 007219 100 TD-IKEL-PLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLP 177 (612)
Q Consensus 100 ~~-i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp 177 (612)
|. +..+ |..+..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|++++|.++.+|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 7777 566888888888888888766655667788888999999888665555566888899999999999998877
Q ss_pred h-hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 178 A-SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 178 ~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
. .+..+++|+.|++++|......|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 6 48889999999999998877778889999999999999998776666678999999999999886
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2e-21 Score=199.26 Aligned_cols=237 Identities=16% Similarity=0.113 Sum_probs=190.7
Q ss_pred ccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCC
Q 007219 68 LETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSG 146 (612)
Q Consensus 68 L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 146 (612)
++.++++.+.....++..+..+++|++|++++|.++.++ ..+..+++|+.|++++|..... +. +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECcC
Confidence 445555554433333345567889999999999999876 5799999999999999875443 33 88999999999999
Q ss_pred CCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCccccc
Q 007219 147 LWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPE 226 (612)
Q Consensus 147 ~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 226 (612)
|. +..++ ..++|++|++++|.+..++.. .+++|+.|++++|......+..+..+++|+.|++++|...+..+.
T Consensus 90 n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NY-VQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SE-EEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred Cc-ccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 95 33333 458999999999999987653 378999999999988777777888999999999999988777666
Q ss_pred cc-CCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCC
Q 007219 227 NL-GKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSL 305 (612)
Q Consensus 227 ~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL 305 (612)
.+ +.+++|+.|++++|.... ++....+++|+.|+|++|.+.. +|..+..+++|
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L 216 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYD------------------------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGV 216 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCE------------------------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTC
T ss_pred HHhhccCcCCEEECCCCcCcc------------------------cccccccccCCEEECCCCcCCc--chhhhcccCcc
Confidence 65 478999999999987432 1233357889999999999864 77778899999
Q ss_pred CEEeccCCCccccchhhhcccccccccccccccc
Q 007219 306 KELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRL 339 (612)
Q Consensus 306 ~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L 339 (612)
+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 9999999999999999999999999999988654
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=1.5e-22 Score=218.54 Aligned_cols=320 Identities=16% Similarity=0.150 Sum_probs=230.1
Q ss_pred CCCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCc----cCCCccC-CCCccEEEccCCcCCcccCcc-ccCCC
Q 007219 18 VPNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLR----ALPAKIF-MKSLETLVLSGCLKLKKFPDI-VGSME 90 (612)
Q Consensus 18 l~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~----~lp~~~~-l~~L~~L~L~~c~~l~~~p~~-~~~l~ 90 (612)
.++|++|+++++........ .+..+++|++|++++|..-. .++..+. +++|++|++++|......+.. ...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 46799999998654333222 36789999999999986321 3344333 799999999998754433322 23344
Q ss_pred ----CCCeeecCCcCCc-----ccccccccCCCCcEEeccCCCCCccccccc-----ccCCCCCEEecCCCCCCcc----
Q 007219 91 ----CLQELHLDGTDIK-----ELPLSIELLSGLVRLTLYGCKNFERIPSTI-----SALKYLSTLNLSGLWKLRE---- 152 (612)
Q Consensus 91 ----~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l-----~~l~~L~~L~L~~~~~l~~---- 152 (612)
+|++|++++|.+. .++..+..+++|++|++++|......+..+ ...++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 7999999999998 568889999999999999988543323222 2356899999999966553
Q ss_pred chhhhhccccccEEEccCcCCCCC-Chhhh-----ccCCCcEEeecCCCCCCc----ccccccCCCCCCEEEecCCCCCc
Q 007219 153 FPEIVESMEQLLELHLEGTAIRGL-PASIE-----FLSGLVLLNLKDCKNLKS----LPRTINGLRSLKTLHLSGCSKLK 222 (612)
Q Consensus 153 ~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~-----~l~~L~~L~L~~c~~l~~----lp~~i~~l~~L~~L~Ls~c~~l~ 222 (612)
++..+..+++|++|++++|.+... +..+. ..++|+.|++++|..... ++..+..+++|++|++++|....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 467778889999999999998752 22222 366999999999976653 67778889999999999997544
Q ss_pred cc-----ccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCC
Q 007219 223 NV-----PENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIP 296 (612)
Q Consensus 223 ~l-----p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip 296 (612)
.. +.....+++|+.|++++|........ .++. +..+++|++|++++|.+.+ ..+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l~~~~~L~~L~Ls~n~i~~-~~~ 301 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCG-------------------DLCRVLRAKESLKELSLAGNELGD-EGA 301 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-------------------HHHHHHHHCTTCCEEECTTCCCHH-HHH
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH-------------------HHHHHHhhCCCcceEECCCCCCch-HHH
Confidence 32 22334689999999999863321000 0111 4457889999999998743 112
Q ss_pred cccc-----CcCCCCEEeccCCCccc-----cchhhhccccccccccccccccccC---------CCCCCCccEEeccCC
Q 007219 297 SDIG-----HLCSLKELYLSRNSFVS-----LPASIIHLSKLGKMVLEDCKRLQSL---------PQPPPSIVSIRVDGC 357 (612)
Q Consensus 297 ~~l~-----~l~sL~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~l~~c~~L~~l---------p~lp~sL~~L~i~~C 357 (612)
..+. ..++|++|+|++|.++. ++..+..+++|++|++++|. +... +...++|+.|++.+|
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC
Confidence 2222 23699999999999873 57788889999999999984 3321 112469999999998
Q ss_pred C
Q 007219 358 T 358 (612)
Q Consensus 358 ~ 358 (612)
.
T Consensus 381 ~ 381 (461)
T 1z7x_W 381 D 381 (461)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.9e-20 Score=203.41 Aligned_cols=238 Identities=18% Similarity=0.079 Sum_probs=139.8
Q ss_pred CccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCC
Q 007219 67 SLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSG 146 (612)
Q Consensus 67 ~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 146 (612)
+|++|+|++|......|..++.+++|++|+|++|.+..++. +..+++|++|++++|. +..+| ..++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECcC
Confidence 44444444444333333444445555555555555443333 4445555555555443 12222 124555555555
Q ss_pred CCCCccchhhhhccccccEEEccCcCCCCC-ChhhhccCCCcEEeecCCCCCCccccccc-CCCCCCEEEecCCCCCccc
Q 007219 147 LWKLREFPEIVESMEQLLELHLEGTAIRGL-PASIEFLSGLVLLNLKDCKNLKSLPRTIN-GLRSLKTLHLSGCSKLKNV 224 (612)
Q Consensus 147 ~~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~~l 224 (612)
|......+. .+++|+.|++++|.+..+ |..++.+++|+.|++++|......|..+. .+++|+.|++++|...+.
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 533322221 245566666666666654 33556666666666666665555555554 566777777776654433
Q ss_pred ccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCC
Q 007219 225 PENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCS 304 (612)
Q Consensus 225 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~s 304 (612)
+. ...+++|+.|++++|.... ..|.+..+++|+.|+|++|.+.. +|..+..+++
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~ 238 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLAF-----------------------MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQN 238 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCCE-----------------------ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTT
T ss_pred cc-cccCCCCCEEECCCCCCCC-----------------------CCHhHcCCCCccEEEecCCcCcc--cchhhccCCC
Confidence 22 2346777777777765322 01125567788889999988864 8888888999
Q ss_pred CCEEeccCCCcc--ccchhhhccccccccccccccccc
Q 007219 305 LKELYLSRNSFV--SLPASIIHLSKLGKMVLEDCKRLQ 340 (612)
Q Consensus 305 L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~l~~c~~L~ 340 (612)
|+.|++++|.+. .+|..+..++.|+.+++..+..+.
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~ 276 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEecccccccc
Confidence 999999999988 778888888888888887655443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.9e-20 Score=200.88 Aligned_cols=218 Identities=17% Similarity=0.132 Sum_probs=180.0
Q ss_pred cCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccE
Q 007219 87 GSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLE 165 (612)
Q Consensus 87 ~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~ 165 (612)
..+++|++|+|++|.+..++ ..+..+++|+.|+|++|......| +..+++|++|++++|. +..+| ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC----CCCCcCE
Confidence 34558999999999999775 679999999999999987544443 8899999999999994 33333 3489999
Q ss_pred EEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccC-CCCCCcEEeccCCCC
Q 007219 166 LHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLG-KVESLEVLDISGCKG 244 (612)
Q Consensus 166 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~l~~~~~ 244 (612)
|++++|.+..++.. .+++|+.|++++|......|..++.+++|+.|++++|...+..|..+. .+++|+.|++++|..
T Consensus 104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 99999999987653 478999999999998888888889999999999999988887787775 789999999998873
Q ss_pred CcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhc
Q 007219 245 LLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIH 324 (612)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~ 324 (612)
.. ++....+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+|..+..
T Consensus 182 ~~------------------------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~ 235 (487)
T 3oja_A 182 YD------------------------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (487)
T ss_dssp CE------------------------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred cc------------------------ccccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcccchhhcc
Confidence 32 1234457889999999999864 777788899999999999999999988888
Q ss_pred ccccccccccccccc
Q 007219 325 LSKLGKMVLEDCKRL 339 (612)
Q Consensus 325 L~~L~~L~l~~c~~L 339 (612)
+++|+.|++++|+..
T Consensus 236 l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEcCCCCCc
Confidence 888888888887543
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=9.2e-22 Score=219.23 Aligned_cols=199 Identities=16% Similarity=0.138 Sum_probs=102.3
Q ss_pred CCCCccEEeccCCCCcccccccccc-CC-CccEEecCCCCCCcc--CCCcc-CCCCccEEEccCCcCCcc----cCcccc
Q 007219 17 RVPNLEQLILEGCTRLHEIHPSLLV-HK-KLIFLNLKGCTSLRA--LPAKI-FMKSLETLVLSGCLKLKK----FPDIVG 87 (612)
Q Consensus 17 ~l~~L~~L~L~~c~~l~~i~~si~~-l~-~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~----~p~~~~ 87 (612)
.+++|++|+|++|......+..++. ++ +|++|++++|..+.. ++... .+++|++|+|++|..... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5788888888887544444444444 23 377777777653221 11111 266777777777653222 233344
Q ss_pred CCCCCCeeecCCcCCc-----ccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCC--------------
Q 007219 88 SMECLQELHLDGTDIK-----ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLW-------------- 148 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~-------------- 148 (612)
++++|++|+++++.++ .++..+.++++|+.|++.+|.. ..+|..+..+++|+.|+++++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 5666666666666654 3334445566666666666542 2344444455555555554321
Q ss_pred ------------CCccchhhhhccccccEEEccCcCCCC--CChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEE
Q 007219 149 ------------KLREFPEIVESMEQLLELHLEGTAIRG--LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLH 214 (612)
Q Consensus 149 ------------~l~~~p~~l~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 214 (612)
....+|..+..+++|++|++++|.+.. ++..+..+++|+.|++.++.....++.....+++|++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 223344455555555555555555432 222344555555555553322223333334455555555
Q ss_pred ec
Q 007219 215 LS 216 (612)
Q Consensus 215 Ls 216 (612)
++
T Consensus 349 L~ 350 (592)
T 3ogk_B 349 IE 350 (592)
T ss_dssp EE
T ss_pred ee
Confidence 55
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=1.2e-18 Score=174.64 Aligned_cols=210 Identities=20% Similarity=0.168 Sum_probs=124.9
Q ss_pred CCccCCCCCCCCCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCccCCC-ccC-CCCccEEEccCCcCCcccCc
Q 007219 8 NLIRTPDFSRVPNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLRALPA-KIF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 8 ~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
++.++|. .-.++|++|++++|.. ..++. .++.+++|++|++++| .+..++. .+. +++|++|++++|......+.
T Consensus 18 ~l~~ip~-~l~~~l~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPD-NLPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCS-SSCTTCCEEECTTCCC-CEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCC-CCCCCccEEECCCCcc-cccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 3455664 1124677777777543 33433 6677777777777775 4445544 233 67777777777765444556
Q ss_pred cccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCc-ccccccccCCCCCEEecCCCCCCccchhhhhcccc
Q 007219 85 IVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFE-RIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQ 162 (612)
Q Consensus 85 ~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~ 162 (612)
.+.++++|++|++++|.+..++. .++.+++|++|++++|.... .+|..+..+++|++|++++|......+..+..+++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 66777777777777777776654 46667777777777665433 24666666667777777666544444455555555
Q ss_pred cc----EEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCC
Q 007219 163 LL----ELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSK 220 (612)
Q Consensus 163 L~----~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~ 220 (612)
|+ +|++++|.+..++.......+|+.|++++|......+..+..+++|+.|++++|..
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 55 66666666666655554445566666666553333233345555555555555543
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=2.5e-21 Score=215.69 Aligned_cols=343 Identities=17% Similarity=0.152 Sum_probs=174.5
Q ss_pred CCCCCCccEEeccCCCCccccc---------------cccccCCCccEEecCCCCCCccCCCcc--CCCCccEEEccCCc
Q 007219 15 FSRVPNLEQLILEGCTRLHEIH---------------PSLLVHKKLIFLNLKGCTSLRALPAKI--FMKSLETLVLSGCL 77 (612)
Q Consensus 15 l~~l~~L~~L~L~~c~~l~~i~---------------~si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~ 77 (612)
+.++++|++|++++|....++. .....+++|+.|++++|......+..+ .+++|++|+|++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4455666666666665433221 112345666666666654222222222 15666666666664
Q ss_pred CCcc--cCccccCCCCCCeeecCCcCCcc-----cccccccCCCCcEEeccCCC-CC--cccccccccCCCCCEEecCCC
Q 007219 78 KLKK--FPDIVGSMECLQELHLDGTDIKE-----LPLSIELLSGLVRLTLYGCK-NF--ERIPSTISALKYLSTLNLSGL 147 (612)
Q Consensus 78 ~l~~--~p~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~-~l--~~lp~~l~~l~~L~~L~L~~~ 147 (612)
.+.. ++....++++|++|++++|.++. ++.....+++|+.|++++|. .. ..++..+..+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3333 34444456666666666665442 22223345566666666654 11 111121234566666666666
Q ss_pred CCCccchhhhhccccccEEEccCc-------------------------------CCCCCChhhhccCCCcEEeecCCCC
Q 007219 148 WKLREFPEIVESMEQLLELHLEGT-------------------------------AIRGLPASIEFLSGLVLLNLKDCKN 196 (612)
Q Consensus 148 ~~l~~~p~~l~~l~~L~~L~L~~~-------------------------------~i~~lp~~i~~l~~L~~L~L~~c~~ 196 (612)
.....++..+..+++|++|++.++ ....++..+..+++|+.|++++|..
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 444445555555555555554322 2223455555678888888888873
Q ss_pred CCc-ccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCC--------CCCcccCc-----ccccccceeccc
Q 007219 197 LKS-LPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGC--------KGLLQSTS-----WFLHFPITLIRR 262 (612)
Q Consensus 197 l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~--------~~~~~~~~-----~~~~~~~~~~~~ 262 (612)
... ++..+..+++|++|++++|.....++.....+++|+.|++.+| ........ ....+..+ ...
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L-~~~ 380 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYF 380 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE-EEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH-HHh
Confidence 322 2334567888888888877222223333345778888887432 21111000 01111111 111
Q ss_pred CCCCccccCCCC-CCCCcccEEecc-----CC-CCCC----CCCCccccCcCCCCEEeccCCCcc-ccchhhhc-ccccc
Q 007219 263 NSDPVAWRFPSL-SGLYCLRKLDIS-----DC-NLGE----GAIPSDIGHLCSLKELYLSRNSFV-SLPASIIH-LSKLG 329 (612)
Q Consensus 263 ~~~~~~~~l~~l-~~l~~L~~L~Ls-----~~-~l~~----~~ip~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~-L~~L~ 329 (612)
........+..+ ..+++|+.|+++ +| .+++ ..++..+..+++|+.|+|++ .++ ..+..+.. +++|+
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~ 459 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKME 459 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCC
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhcc
Confidence 111111111222 246778888888 23 3331 11122245677888888877 444 33334444 77888
Q ss_pred cccccccccccc-CC---CCCCCccEEeccCCCC
Q 007219 330 KMVLEDCKRLQS-LP---QPPPSIVSIRVDGCTS 359 (612)
Q Consensus 330 ~L~l~~c~~L~~-lp---~lp~sL~~L~i~~C~~ 359 (612)
.|++++|..-.. ++ .-.++|+.|++.+|+-
T Consensus 460 ~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 888887753111 11 1146788888888774
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.1e-18 Score=171.24 Aligned_cols=198 Identities=20% Similarity=0.187 Sum_probs=146.6
Q ss_pred CccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccc-cccCCCCcEEeccC
Q 007219 44 KLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLS-IELLSGLVRLTLYG 122 (612)
Q Consensus 44 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 122 (612)
.++.+++++ ..++.+|..+ .++|++|++++|......+..+.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccC-CCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 456677766 4566677644 36778888887764444445677788888888888888877765 36778888888887
Q ss_pred CCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChh-hhccCCCcEEeecCCCCCCccc
Q 007219 123 CKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPAS-IEFLSGLVLLNLKDCKNLKSLP 201 (612)
Q Consensus 123 ~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp 201 (612)
|......+..+..+++|++|++++|......+..+..+++|++|++++|.+..+|.. +..+++|+.|++++|......+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 765443344567788888888888866655666778888888888888888887764 6788888999988887666555
Q ss_pred ccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 202 RTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 202 ~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
..+..+++|+.|++++|...+..+..+..+++|+.|++++|+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 667888999999999886665445567888999999998876
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=2.4e-18 Score=173.92 Aligned_cols=153 Identities=21% Similarity=0.210 Sum_probs=88.8
Q ss_pred ccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccE
Q 007219 86 VGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLE 165 (612)
Q Consensus 86 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~ 165 (612)
+++++++++++++++.++.+|..+. ++++.|++++|......+..+..+++|+.|++++|. +..++.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 4556667777777777776665543 566666666666544444556666666666666663 2233322 55666777
Q ss_pred EEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCC
Q 007219 166 LHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGC 242 (612)
Q Consensus 166 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~ 242 (612)
|++++|.+..+|..+..+++|+.|++++|......|..+..+++|+.|++++|...+..+..+..+++|+.|++++|
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 77777777766666666666666666666554444455556666666666665444333333344444444444433
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=2.9e-18 Score=171.96 Aligned_cols=215 Identities=22% Similarity=0.155 Sum_probs=110.0
Q ss_pred CCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCccccccc
Q 007219 55 SLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPSTI 133 (612)
Q Consensus 55 ~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l 133 (612)
.+..+|..+ .++|++|++++|......+..+.++++|++|++++|.++.++. .+..+++|++|++++|......+..+
T Consensus 18 ~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 18 NFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 344555533 3556677776665433333456666677777777666665553 45556666666666655433333445
Q ss_pred ccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCC--CChhhhccCCCcEEeecCCCCCCcccccccCCCCCC
Q 007219 134 SALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRG--LPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLK 211 (612)
Q Consensus 134 ~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 211 (612)
..+++|++|++++|......+..+..+++|++|++++|.+.. +|..+..+++|+.|++++|......+..+..+++|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 555555555555553333333344455555555555555544 344455555555555544443332222232222222
Q ss_pred EEEecCCCCCcccccccCCCCCCc-EEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCC
Q 007219 212 TLHLSGCSKLKNVPENLGKVESLE-VLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNL 290 (612)
Q Consensus 212 ~L~Ls~c~~l~~lp~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l 290 (612)
.|. .|++++|..... .+......+|+.|++++|.+
T Consensus 177 ---------------------~l~l~L~ls~n~l~~~-----------------------~~~~~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 177 ---------------------LLNLSLDLSLNPMNFI-----------------------QPGAFKEIRLKELALDTNQL 212 (276)
T ss_dssp ---------------------TCCEEEECCSSCCCEE-----------------------CTTSSCSCCEEEEECCSSCC
T ss_pred ---------------------ccceeeecCCCccccc-----------------------CccccCCCcccEEECCCCce
Confidence 111 344444331110 00111223577777777776
Q ss_pred CCCCCCc-cccCcCCCCEEeccCCCcc
Q 007219 291 GEGAIPS-DIGHLCSLKELYLSRNSFV 316 (612)
Q Consensus 291 ~~~~ip~-~l~~l~sL~~L~Ls~n~l~ 316 (612)
.. +|. .+..+++|+.|+|++|.+.
T Consensus 213 ~~--~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 213 KS--VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SC--CCTTTTTTCCSCCEEECCSSCBC
T ss_pred ee--cCHhHhcccccccEEEccCCccc
Confidence 42 443 3566777778888777765
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.8e-20 Score=208.67 Aligned_cols=321 Identities=15% Similarity=0.117 Sum_probs=215.2
Q ss_pred CCCCccEEeccCCCCccc----cccccccCCCccEEecCCCCCC----ccCCCccC-CCCccEEEccCCcCCcccCcccc
Q 007219 17 RVPNLEQLILEGCTRLHE----IHPSLLVHKKLIFLNLKGCTSL----RALPAKIF-MKSLETLVLSGCLKLKKFPDIVG 87 (612)
Q Consensus 17 ~l~~L~~L~L~~c~~l~~----i~~si~~l~~L~~L~L~~c~~l----~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~ 87 (612)
.+++|++|+|++|..... ++.....+++|+.|+++++..- ..++..+. +++|++|++++|. +..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHh
Confidence 689999999999864333 4445678999999999986432 23333333 8999999999987 555778888
Q ss_pred CCCCCCeeecCCcCC----cccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCcc-chhhhhcccc
Q 007219 88 SMECLQELHLDGTDI----KELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLRE-FPEIVESMEQ 162 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i----~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-~p~~l~~l~~ 162 (612)
++++|++|+++.... ...+..+..+++|+.|++.++ ....+|..+..+++|++|++++|..... ++..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 999999999985332 244566788889999999874 3466777777889999999999873322 3355788899
Q ss_pred ccEEEccCcCCC--CCChhhhccCCCcEEeecC----------CCCCCc--ccccccCCCCCCEEEecCCCCCccccccc
Q 007219 163 LLELHLEGTAIR--GLPASIEFLSGLVLLNLKD----------CKNLKS--LPRTINGLRSLKTLHLSGCSKLKNVPENL 228 (612)
Q Consensus 163 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~----------c~~l~~--lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 228 (612)
|++|+++ +.+. .++.....+++|+.|++.+ |..++. ++.....+++|+.|+++.+...+..+..+
T Consensus 320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 9999998 4443 2455557788999999995 555442 33334568899999997666655555555
Q ss_pred CC-CCCCcEEeccCCC---CCcccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCC--CCCCCCCccccC
Q 007219 229 GK-VESLEVLDISGCK---GLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCN--LGEGAIPSDIGH 301 (612)
Q Consensus 229 ~~-l~~L~~L~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~--l~~~~ip~~l~~ 301 (612)
+. +++|+.|+++++. ....... ...++. +.++++|+.|++++|. +++..+......
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~-----------------~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPL-----------------DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCC-----------------HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred HhhCCCCcEEEEeecCCCccccCchH-----------------HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 54 8889999997543 2210000 000111 3346678888887654 332222222234
Q ss_pred cCCCCEEeccCCCcc--ccchhhhcccccccccccccccccc--CCC---CCCCccEEeccCCC
Q 007219 302 LCSLKELYLSRNSFV--SLPASIIHLSKLGKMVLEDCKRLQS--LPQ---PPPSIVSIRVDGCT 358 (612)
Q Consensus 302 l~sL~~L~Ls~n~l~--~lp~~i~~L~~L~~L~l~~c~~L~~--lp~---lp~sL~~L~i~~C~ 358 (612)
+++|++|+|++|.++ .++..+..+++|++|++++|. +.. ++. ..++|+.|++++|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 677888888887776 455566777788888888876 221 121 23677788887776
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=5.1e-18 Score=171.48 Aligned_cols=200 Identities=23% Similarity=0.215 Sum_probs=142.9
Q ss_pred cccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEE
Q 007219 39 LLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRL 118 (612)
Q Consensus 39 i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 118 (612)
++.+++++.+++++ +.++.+|..+ .++|++|++++|......|..+.++++|++|++++|.++.++.. +.+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCC-CCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 45666677777766 4566666544 36777777777775555566677777777777777777777654 677777777
Q ss_pred eccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChh-hhccCCCcEEeecCCCCC
Q 007219 119 TLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPAS-IEFLSGLVLLNLKDCKNL 197 (612)
Q Consensus 119 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l 197 (612)
++++|. +..+|..+..+++|++|++++|......+..+..+++|++|++++|.+..+|.. +..+++|+.|++++|...
T Consensus 83 ~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 777765 456677677777788888877755544456677788888888888888876654 467788888888887655
Q ss_pred CcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 198 KSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 198 ~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
...+..+..+++|+.|++++|... .+|..+..+.+|+.|++.+|+
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 433344567888888888887544 778778888888888888876
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.3e-19 Score=186.93 Aligned_cols=177 Identities=20% Similarity=0.210 Sum_probs=104.9
Q ss_pred CCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcc--cccccccCCCCcEEeccCCCCCcccccccccCCCCCEEe
Q 007219 66 KSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKE--LPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLN 143 (612)
Q Consensus 66 ~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 143 (612)
++++.|+++++......+. +..+++|++|+++++.+.. +|..+..+++|++|++++|......+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5666666666553333333 4456666666666666652 555566666666666666654445555566666677777
Q ss_pred cCCCCCCc--cchhhhhccccccEEEccCc-CCCC--CChhhhccC-CCcEEeecCCC--CC-CcccccccCCCCCCEEE
Q 007219 144 LSGLWKLR--EFPEIVESMEQLLELHLEGT-AIRG--LPASIEFLS-GLVLLNLKDCK--NL-KSLPRTINGLRSLKTLH 214 (612)
Q Consensus 144 L~~~~~l~--~~p~~l~~l~~L~~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~c~--~l-~~lp~~i~~l~~L~~L~ 214 (612)
+++|..+. .++..+..+++|++|++++| .++. ++..+..++ +|+.|++++|. .. ..+|..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 76664443 25555666666666666666 6653 455566666 66666666663 22 34455555666666666
Q ss_pred ecCCC-CCcccccccCCCCCCcEEeccCCC
Q 007219 215 LSGCS-KLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 215 Ls~c~-~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
+++|. .....+..++.+++|+.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 66666 333444455555666666665554
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=1.3e-19 Score=187.00 Aligned_cols=249 Identities=19% Similarity=0.193 Sum_probs=185.2
Q ss_pred CccEEEccCCcCCcccCccccCC--CCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcc-cccccccCCCCCEEe
Q 007219 67 SLETLVLSGCLKLKKFPDIVGSM--ECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFER-IPSTISALKYLSTLN 143 (612)
Q Consensus 67 ~L~~L~L~~c~~l~~~p~~~~~l--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~ 143 (612)
.++.|+++++... |..+..+ ++++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4788888886543 4456666 889999999999998877788899999999999875444 777788899999999
Q ss_pred cCCCCCCccchhhhhccccccEEEccCc-CCCC--CChhhhccCCCcEEeecCCCCCCc--ccccccCCC-CCCEEEecC
Q 007219 144 LSGLWKLREFPEIVESMEQLLELHLEGT-AIRG--LPASIEFLSGLVLLNLKDCKNLKS--LPRTINGLR-SLKTLHLSG 217 (612)
Q Consensus 144 L~~~~~l~~~p~~l~~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~-~L~~L~Ls~ 217 (612)
+++|......+..+..+++|++|++++| .++. ++..+..+++|+.|++++|..+.. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999766678888889999999999999 6773 777788999999999999944432 677788899 999999999
Q ss_pred CC--CC-cccccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCC
Q 007219 218 CS--KL-KNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGA 294 (612)
Q Consensus 218 c~--~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ 294 (612)
|. .. ..++..++.+++|+.|++++|..... ..++.+..+++|+.|++++|......
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---------------------~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---------------------DCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---------------------GGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH---------------------HHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 84 33 45677777889999999998873321 01223556788999999998522111
Q ss_pred CCccccCcCCCCEEeccCCCccccch-hhhcc-ccccccccccccccccCC
Q 007219 295 IPSDIGHLCSLKELYLSRNSFVSLPA-SIIHL-SKLGKMVLEDCKRLQSLP 343 (612)
Q Consensus 295 ip~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~L-~~L~~L~l~~c~~L~~lp 343 (612)
....+..+++|+.|+|++| ++. .+..+ ..|+.|+++++..-...|
T Consensus 264 ~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCccccC
Confidence 1235777899999999988 332 33444 246777776554433333
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=2.4e-18 Score=172.31 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=28.1
Q ss_pred CCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc-ccchhhhcccc
Q 007219 274 LSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV-SLPASIIHLSK 327 (612)
Q Consensus 274 l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~L~~ 327 (612)
+..+++|+.|++++|.+. +.+++|+.|++..|.+. .+|.+++.+..
T Consensus 201 ~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 345566666666666542 23456777777777766 67766665544
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5.7e-21 Score=212.82 Aligned_cols=220 Identities=17% Similarity=0.172 Sum_probs=152.3
Q ss_pred cEEeccCCCCccccccccccCCCccEEecCCCCCCccCCC---c------------c-CCCCccEEEccCCcCCcccCcc
Q 007219 22 EQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPA---K------------I-FMKSLETLVLSGCLKLKKFPDI 85 (612)
Q Consensus 22 ~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~---~------------~-~l~~L~~L~L~~c~~l~~~p~~ 85 (612)
+.+++.+|.... ....+..+++|+.|++++|..+..+.. . . .+++|++|+|++|......+..
T Consensus 46 ~~l~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAVS-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSSC-HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeeccccccC-HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 456776665432 223467889999999999876654431 1 1 2789999999999865555555
Q ss_pred cc-CCCCCCeeecCCc-CCcc--cccccccCCCCcEEeccCCCCCc----ccccccccCCCCCEEecCCCC-CC--ccch
Q 007219 86 VG-SMECLQELHLDGT-DIKE--LPLSIELLSGLVRLTLYGCKNFE----RIPSTISALKYLSTLNLSGLW-KL--REFP 154 (612)
Q Consensus 86 ~~-~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~-~l--~~~p 154 (612)
+. .+++|++|+++++ .+.. ++..+.++++|++|++++|.... .++.....+++|++|++++|. .+ ..++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 6899999999988 5654 66666789999999999987322 233333467899999999986 11 1234
Q ss_pred hhhhccccccEEEccCc-CCCCCChhhhccCCCcEEeecCCCC-------------------CC-----------ccccc
Q 007219 155 EIVESMEQLLELHLEGT-AIRGLPASIEFLSGLVLLNLKDCKN-------------------LK-----------SLPRT 203 (612)
Q Consensus 155 ~~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~-------------------l~-----------~lp~~ 203 (612)
..+..+++|++|+++++ .+..+|..+..+++|+.|++..|.. +. .++..
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~ 284 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH
Confidence 44567899999999998 5556888888999999998665531 11 12333
Q ss_pred ccCCCCCCEEEecCCCCCcc-cccccCCCCCCcEEeccCC
Q 007219 204 INGLRSLKTLHLSGCSKLKN-VPENLGKVESLEVLDISGC 242 (612)
Q Consensus 204 i~~l~~L~~L~Ls~c~~l~~-lp~~l~~l~~L~~L~l~~~ 242 (612)
+..+++|++|++++|..... +...+..+++|+.|++.+|
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 33567777777777773322 2333566777888877766
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=2e-18 Score=172.91 Aligned_cols=211 Identities=18% Similarity=0.200 Sum_probs=119.2
Q ss_pred CCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCC
Q 007219 12 TPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMEC 91 (612)
Q Consensus 12 ~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~ 91 (612)
...+..+++|++|++.+|. +..+ +.++.+++|++|++++|. +..++....+++|++|++++|......+..++++++
T Consensus 34 ~~~~~~l~~L~~L~l~~~~-i~~~-~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 34 AVTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp EECHHHHTTCCEEECTTSC-CCCC-TTGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccccccceeeeeeCCCC-cccc-cccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 3344556666666666643 3333 346666666666666643 444443223666666666666544334444566666
Q ss_pred CCeeecCCcCCcccccc-cccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccC
Q 007219 92 LQELHLDGTDIKELPLS-IELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEG 170 (612)
Q Consensus 92 L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~ 170 (612)
|++|++++|.++.++.. +..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 66666666666655543 45666666666666643332233345666666666666644433444456666666666666
Q ss_pred cCCCCCChh-hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCC
Q 007219 171 TAIRGLPAS-IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVE 232 (612)
Q Consensus 171 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~ 232 (612)
|.+..++.. +..+++|+.|++++|... +.+++|+.|+++.|...+.+|..++.++
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 666655433 455666666666665432 2344566666666666666665555443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2.2e-18 Score=168.94 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=37.2
Q ss_pred CcccEEeccCCC-CCCCCCCccccCc-CCCCEEeccCCCccccchhhhcccccccccccccc
Q 007219 278 YCLRKLDISDCN-LGEGAIPSDIGHL-CSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCK 337 (612)
Q Consensus 278 ~~L~~L~Ls~~~-l~~~~ip~~l~~l-~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~ 337 (612)
++|+.|++++|. +. ...+..+..+ ++|+.|+|++|.++.+|.. .+++|+.|++.++.
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 467777777774 53 2223456667 7788888888887777765 56677777766654
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=3e-17 Score=164.01 Aligned_cols=200 Identities=21% Similarity=0.218 Sum_probs=100.0
Q ss_pred CccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCcccccccccCCCCCEEecC
Q 007219 67 SLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLS 145 (612)
Q Consensus 67 ~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 145 (612)
.+++++++++. ++.+|..+. ++|++|+++++.++.++. .+..+++|++|++++|... .+|
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~--------------- 77 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP--------------- 77 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCC---------------
T ss_pred CCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeC---------------
Confidence 34555555543 334444322 345555555555554443 3444444444444444322 222
Q ss_pred CCCCCccchhhhhccccccEEEccCcCCCCCCh-hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCccc
Q 007219 146 GLWKLREFPEIVESMEQLLELHLEGTAIRGLPA-SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNV 224 (612)
Q Consensus 146 ~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 224 (612)
+..+..+++|++|++++|.+..+|. .+..+++|+.|++++|......+..+..+++|+.|++++|...+..
T Consensus 78 --------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 78 --------AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp --------TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred --------hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 2233445555555555555555443 2345555555555555444444444555666666666665444333
Q ss_pred ccccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCC
Q 007219 225 PENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCS 304 (612)
Q Consensus 225 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~s 304 (612)
+..++.+++|+.|++++|..... ....+..+++|+.|+|++|.+.. ..+..+..+++
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~ 206 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRV----------------------PEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEK 206 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCC----------------------CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTT
T ss_pred HhHccCCcccceeEecCCcCcEe----------------------ChhHhccCCCcCEEECCCCcCCc-CCHHHhccccC
Confidence 33355556666666655542210 00114456667777777776642 22234566777
Q ss_pred CCEEeccCCCcc
Q 007219 305 LKELYLSRNSFV 316 (612)
Q Consensus 305 L~~L~Ls~n~l~ 316 (612)
|+.|+|++|.+.
T Consensus 207 L~~L~l~~N~~~ 218 (270)
T 2o6q_A 207 LKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCBC
T ss_pred CCEEEecCCCee
Confidence 777777777654
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=8.8e-18 Score=171.31 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=33.3
Q ss_pred CCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccccchhhhcccccccccccccc
Q 007219 275 SGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCK 337 (612)
Q Consensus 275 ~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~ 337 (612)
..+++|+.|++++|.+.+ ++. +..+++|++|+|++|.+..++. +..+++|+.|++++|+
T Consensus 170 ~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 344555555555555532 322 5556666666666666665553 5666666666666654
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=173.04 Aligned_cols=221 Identities=20% Similarity=0.159 Sum_probs=128.8
Q ss_pred CccEEecCCCCCCc----cCCCccCCCCccEEEccCCcCCcccCccc--cCCCCCCeeecCCcCCccc-c----cccccC
Q 007219 44 KLIFLNLKGCTSLR----ALPAKIFMKSLETLVLSGCLKLKKFPDIV--GSMECLQELHLDGTDIKEL-P----LSIELL 112 (612)
Q Consensus 44 ~L~~L~L~~c~~l~----~lp~~~~l~~L~~L~L~~c~~l~~~p~~~--~~l~~L~~L~L~~~~i~~l-p----~~i~~l 112 (612)
+++.+.+.++.... .+.....+++|++|++++|...+..|..+ ..+++|++|++++|.+... + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45666666643211 11111224567777777777666666665 7777777777777777642 2 234457
Q ss_pred CCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCcc--ch--hhhhccccccEEEccCcCCCCCChh----hhccC
Q 007219 113 SGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLRE--FP--EIVESMEQLLELHLEGTAIRGLPAS----IEFLS 184 (612)
Q Consensus 113 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~--~p--~~l~~l~~L~~L~L~~~~i~~lp~~----i~~l~ 184 (612)
++|++|++++|......+..+..+++|++|++++|...+. ++ ..+..+++|++|++++|.++.++.. ++.++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 7777777777766555556666777777777777754332 22 1224566666777766666654442 34555
Q ss_pred CCcEEeecCCCCCCcccccccCC---CCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCCCcccCcccccccceecc
Q 007219 185 GLVLLNLKDCKNLKSLPRTINGL---RSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIR 261 (612)
Q Consensus 185 ~L~~L~L~~c~~l~~lp~~i~~l---~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 261 (612)
+|+.|++++|......|..+..+ ++|++|++++|... .+|..+
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--------------------------------- 270 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--------------------------------- 270 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC---------------------------------
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh---------------------------------
Confidence 66666666555544444444433 34555555444322 222221
Q ss_pred cCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCcc
Q 007219 262 RNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFV 316 (612)
Q Consensus 262 ~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~ 316 (612)
.++|+.|+|++|++.. +|. +..+++|+.|+|++|.++
T Consensus 271 ---------------~~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 271 ---------------PAKLRVLDLSSNRLNR--APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ---------------CSCCSCEECCSCCCCS--CCC-TTSCCCCSCEECSSTTTS
T ss_pred ---------------cCCCCEEECCCCcCCC--Cch-hhhCCCccEEECcCCCCC
Confidence 1567777777777753 343 466778888888888765
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=9e-18 Score=164.61 Aligned_cols=194 Identities=14% Similarity=0.173 Sum_probs=110.2
Q ss_pred CccEEecCCCCCCccCCCc-cC-CCCccEEEccCCcCCcccC-ccccCCCCCCeeecCC-cCCccccc-ccccCCCCcEE
Q 007219 44 KLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGCLKLKKFP-DIVGSMECLQELHLDG-TDIKELPL-SIELLSGLVRL 118 (612)
Q Consensus 44 ~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L 118 (612)
+|++|+++++ .++.+|.. +. +++|++|++++|..++.++ ..+.++++|++|++++ |.++.+|. .+..+++|+.|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4555555542 23344432 21 5555555555554233333 2445555555555555 55555542 34555555555
Q ss_pred eccCCCCCcccccccccCCCCC---EEecCCCCCCccch-hhhhcccccc-EEEccCcCCCCCChhhhccCCCcEEeecC
Q 007219 119 TLYGCKNFERIPSTISALKYLS---TLNLSGLWKLREFP-EIVESMEQLL-ELHLEGTAIRGLPASIEFLSGLVLLNLKD 193 (612)
Q Consensus 119 ~L~~~~~l~~lp~~l~~l~~L~---~L~L~~~~~l~~~p-~~l~~l~~L~-~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 193 (612)
++++|.. ..+|. +..+++|+ +|++++|..+..+| ..+..+++|+ +|++++|.++.+|......++|+.|++++
T Consensus 111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 5555542 33444 55555555 66666663333333 3466677777 77777777777766554447777788877
Q ss_pred CCCCCccc-ccccCC-CCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 194 CKNLKSLP-RTINGL-RSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 194 c~~l~~lp-~~i~~l-~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
|+.+..+| ..+..+ ++|+.|++++|... .+|.. .+++|+.|.+.++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 76444543 456677 78888888876543 45543 57788888877654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.4e-17 Score=169.81 Aligned_cols=193 Identities=17% Similarity=0.223 Sum_probs=125.5
Q ss_pred cccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEE
Q 007219 39 LLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRL 118 (612)
Q Consensus 39 i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 118 (612)
...+++|+.|++++| .+..+|....+++|++|++++|. +..++. +..+++|++|++++|.++.++ .+..+++|+.|
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCC-CccCchhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 345666666666664 44555542236677777777665 334444 666777777777777776665 46667777777
Q ss_pred eccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCC
Q 007219 119 TLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLK 198 (612)
Q Consensus 119 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~ 198 (612)
++++|.. ..++. +..+++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|+.|++++|....
T Consensus 113 ~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQI-TDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCC-CCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCC-CCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence 7777653 33443 66777777777777743 33333 6677777777777777777666 6777777777777776443
Q ss_pred cccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCC
Q 007219 199 SLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKG 244 (612)
Q Consensus 199 ~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 244 (612)
++. +..+++|+.|++++|...+.. .+..+++|+.|++++|..
T Consensus 188 -~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 188 -ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred -Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence 332 667778888888877655433 267788888888887763
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=9.7e-19 Score=184.32 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=37.1
Q ss_pred ccccEEEccCcCCC--CCC---hhhhccCCCcEEeecCCCCCC-----cccccccCCCCCCEEEecCCCCC----ccccc
Q 007219 161 EQLLELHLEGTAIR--GLP---ASIEFLSGLVLLNLKDCKNLK-----SLPRTINGLRSLKTLHLSGCSKL----KNVPE 226 (612)
Q Consensus 161 ~~L~~L~L~~~~i~--~lp---~~i~~l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~Ls~c~~l----~~lp~ 226 (612)
++|++|++++|.+. .+| ..+..+++|+.|++++|.... .+|..+..+++|+.|+|++|... ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45555555555543 122 234444555555555553321 12224444555555555555432 33444
Q ss_pred ccCCCCCCcEEeccCCC
Q 007219 227 NLGKVESLEVLDISGCK 243 (612)
Q Consensus 227 ~l~~l~~L~~L~l~~~~ 243 (612)
.+..+++|+.|++++|.
T Consensus 239 ~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HGGGCTTCCEEECTTCC
T ss_pred HHccCCCcCEEECCCCC
Confidence 44444444444444443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=8.1e-19 Score=184.92 Aligned_cols=231 Identities=16% Similarity=0.157 Sum_probs=182.9
Q ss_pred CCCCCCccEEeccCCCCccc----cccccccCCCccEEecCCC--CCCc-cCCCcc--------CCCCccEEEccCCcCC
Q 007219 15 FSRVPNLEQLILEGCTRLHE----IHPSLLVHKKLIFLNLKGC--TSLR-ALPAKI--------FMKSLETLVLSGCLKL 79 (612)
Q Consensus 15 l~~l~~L~~L~L~~c~~l~~----i~~si~~l~~L~~L~L~~c--~~l~-~lp~~~--------~l~~L~~L~L~~c~~l 79 (612)
+..+++|++|+|++|..... +...+..+++|++|+|++| +.+. .+|..+ .+++|++|+|++|...
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 45688999999999865544 3344678999999999987 2222 334433 3899999999999865
Q ss_pred c----ccCccccCCCCCCeeecCCcCCcc-----cccccccC---------CCCcEEeccCCCCC-cccc---cccccCC
Q 007219 80 K----KFPDIVGSMECLQELHLDGTDIKE-----LPLSIELL---------SGLVRLTLYGCKNF-ERIP---STISALK 137 (612)
Q Consensus 80 ~----~~p~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~L~~~~~l-~~lp---~~l~~l~ 137 (612)
. .+|..+..+++|++|+|++|.+.. ++..+..+ ++|++|++++|... ..++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 477788999999999999999872 34445555 89999999999865 3444 4577899
Q ss_pred CCCEEecCCCCCCc-----cchhhhhccccccEEEccCcCC-----CCCChhhhccCCCcEEeecCCCCCCc----cccc
Q 007219 138 YLSTLNLSGLWKLR-----EFPEIVESMEQLLELHLEGTAI-----RGLPASIEFLSGLVLLNLKDCKNLKS----LPRT 203 (612)
Q Consensus 138 ~L~~L~L~~~~~l~-----~~p~~l~~l~~L~~L~L~~~~i-----~~lp~~i~~l~~L~~L~L~~c~~l~~----lp~~ 203 (612)
+|++|++++|.... ..+..+..+++|++|++++|.+ ..+|..+..+++|+.|+|++|..... ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 99999999995542 2333788999999999999999 45888899999999999999987654 5666
Q ss_pred c--cCCCCCCEEEecCCCCCc----cccccc-CCCCCCcEEeccCCCCC
Q 007219 204 I--NGLRSLKTLHLSGCSKLK----NVPENL-GKVESLEVLDISGCKGL 245 (612)
Q Consensus 204 i--~~l~~L~~L~Ls~c~~l~----~lp~~l-~~l~~L~~L~l~~~~~~ 245 (612)
+ +.+++|+.|++++|.... .+|..+ .++++|+.|++++|...
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 6 349999999999998877 488777 66899999999998743
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=5e-18 Score=177.25 Aligned_cols=247 Identities=15% Similarity=0.115 Sum_probs=123.7
Q ss_pred EccCCcCCcccCccccCCCCCCeeecCCcCCcccc-----cccccCC-CCcEEeccCCCCCcccccccccC-----CCCC
Q 007219 72 VLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELP-----LSIELLS-GLVRLTLYGCKNFERIPSTISAL-----KYLS 140 (612)
Q Consensus 72 ~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~~l~~lp~~l~~l-----~~L~ 140 (612)
.++.+...+.+|+.+...++|++|++++|.+...+ ..+..++ +|++|++++|......+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 44444444444444444455555555555555443 3444555 56666665554333333333332 5666
Q ss_pred EEecCCCCCCccchhhhhc----c-ccccEEEccCcCCCCCCh-h----hhc-cCCCcEEeecCCCCCC----ccccccc
Q 007219 141 TLNLSGLWKLREFPEIVES----M-EQLLELHLEGTAIRGLPA-S----IEF-LSGLVLLNLKDCKNLK----SLPRTIN 205 (612)
Q Consensus 141 ~L~L~~~~~l~~~p~~l~~----l-~~L~~L~L~~~~i~~lp~-~----i~~-l~~L~~L~L~~c~~l~----~lp~~i~ 205 (612)
+|++++|......+..+.. + ++|++|++++|.+...+. . +.. .++|+.|++++|.... .++..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 6666666544444433322 2 566666666666665432 1 222 2466666666665442 2333334
Q ss_pred CCC-CCCEEEecCCCCCccccc----ccCCC-CCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCC-CCC-C
Q 007219 206 GLR-SLKTLHLSGCSKLKNVPE----NLGKV-ESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSG-L 277 (612)
Q Consensus 206 ~l~-~L~~L~Ls~c~~l~~lp~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~-l 277 (612)
.++ +|++|++++|...+..+. .+..+ ++|+.|++++|........ .++. +.. .
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------------------~l~~~l~~~~ 224 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA-------------------ELAYIFSSIP 224 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-------------------HHHHHHHHSC
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH-------------------HHHHHHhcCC
Confidence 444 666666666655444332 22333 3666666666652210000 0011 111 2
Q ss_pred CcccEEeccCCCCCCCCC---CccccCcCCCCEEeccCCCcc--------ccchhhhcccccccccccccc
Q 007219 278 YCLRKLDISDCNLGEGAI---PSDIGHLCSLKELYLSRNSFV--------SLPASIIHLSKLGKMVLEDCK 337 (612)
Q Consensus 278 ~~L~~L~Ls~~~l~~~~i---p~~l~~l~sL~~L~Ls~n~l~--------~lp~~i~~L~~L~~L~l~~c~ 337 (612)
++|++|+|++|.+.+... ...+..+++|+.|+|++|.+. .++..+..+++|+.|++++++
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 467777777777654211 223455667777777777633 233344555666666666553
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=166.14 Aligned_cols=222 Identities=15% Similarity=0.108 Sum_probs=173.2
Q ss_pred CCCCccEEeccCCCCcccccc---ccccCCCccEEecCCCCCCccCCCcc--C-CCCccEEEccCCcCCcccC----ccc
Q 007219 17 RVPNLEQLILEGCTRLHEIHP---SLLVHKKLIFLNLKGCTSLRALPAKI--F-MKSLETLVLSGCLKLKKFP----DIV 86 (612)
Q Consensus 17 ~l~~L~~L~L~~c~~l~~i~~---si~~l~~L~~L~L~~c~~l~~lp~~~--~-l~~L~~L~L~~c~~l~~~p----~~~ 86 (612)
+...++.|.+.++........ ....+++|++|++++|......|..+ . +++|++|++++|......+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 344578888887654322111 12345779999999987766777765 4 8999999999998766554 234
Q ss_pred cCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCcc--cc--cccccCCCCCEEecCCCCCCccchh----hh
Q 007219 87 GSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFER--IP--STISALKYLSTLNLSGLWKLREFPE----IV 157 (612)
Q Consensus 87 ~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~--lp--~~l~~l~~L~~L~L~~~~~l~~~p~----~l 157 (612)
..+++|++|++++|.+..++ ..++.+++|++|++++|..... ++ ..+..+++|++|++++|.. ..++. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHH
Confidence 57999999999999999776 6788999999999999986542 32 2246899999999999954 44454 35
Q ss_pred hccccccEEEccCcCCCCC-Chhhhcc---CCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCC
Q 007219 158 ESMEQLLELHLEGTAIRGL-PASIEFL---SGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVES 233 (612)
Q Consensus 158 ~~l~~L~~L~L~~~~i~~l-p~~i~~l---~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~ 233 (612)
..+++|++|++++|.+..+ |..+..+ ++|+.|++++|... .+|..+. ++|+.|++++|...+ +|. +..+++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~ 295 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPE 295 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCC
Confidence 7889999999999999986 7777776 69999999999866 7787774 899999999997664 344 678899
Q ss_pred CcEEeccCCCC
Q 007219 234 LEVLDISGCKG 244 (612)
Q Consensus 234 L~~L~l~~~~~ 244 (612)
|+.|++++|..
T Consensus 296 L~~L~L~~N~l 306 (310)
T 4glp_A 296 VDNLTLDGNPF 306 (310)
T ss_dssp CSCEECSSTTT
T ss_pred ccEEECcCCCC
Confidence 99999999874
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.6e-16 Score=165.12 Aligned_cols=207 Identities=19% Similarity=0.178 Sum_probs=123.4
Q ss_pred CccccccccccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccCc-cccCCCCCCe-eecCCcCCcccc
Q 007219 31 RLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFPD-IVGSMECLQE-LHLDGTDIKELP 106 (612)
Q Consensus 31 ~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p~-~~~~l~~L~~-L~L~~~~i~~lp 106 (612)
.+.+||..+ .++++.|+|++ +.++.+|...+ +++|++|+|++|...+.+|. .+.++++|++ +.+..|+++.++
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCccCcCc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 344555443 24555555555 34555554322 55666666666554454442 3455555543 334445555553
Q ss_pred -cccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchh-hhhcc-ccccEEEccCcCCCCCChhhhcc
Q 007219 107 -LSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPE-IVESM-EQLLELHLEGTAIRGLPASIEFL 183 (612)
Q Consensus 107 -~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~-~l~~l-~~L~~L~L~~~~i~~lp~~i~~l 183 (612)
..+..+++|+.|++++|......+..+.....+..|++.++..+..++. .+..+ ..++.|++++|.++++|..+...
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~ 176 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence 3455566666666665543322222333444556666665555555443 33343 35788888888888888877777
Q ss_pred CCCcEEeecCCCCCCcccc-cccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 184 SGLVLLNLKDCKNLKSLPR-TINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 184 ~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
.+|+.|++.++..++.+|. .+..+++|+.|++++|. ++.+|.. .+.+|+.|.+.++.
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--GLENLKKLRARSTY 234 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--SCTTCCEEECTTCT
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--hhccchHhhhccCC
Confidence 7888888888888888875 46788889999998875 4556643 25667777666554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=4.3e-16 Score=153.86 Aligned_cols=174 Identities=21% Similarity=0.200 Sum_probs=92.2
Q ss_pred CccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccC
Q 007219 44 KLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYG 122 (612)
Q Consensus 44 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~ 122 (612)
..+.+++++ ..++.+|..+ .++|+.|+|++|......+..+.++++|++|++++|.++.++. .+..+++|++|++++
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCC-CCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 345566665 4556666544 3567777777766555555556667777777777777765543 355566666666666
Q ss_pred CCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCCh-hhhccCCCcEEeecCCCCCCccc
Q 007219 123 CKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPA-SIEFLSGLVLLNLKDCKNLKSLP 201 (612)
Q Consensus 123 ~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp 201 (612)
|......+..+..+++|++|++++|......+..+..+++|++|++++|.++.+|. .++.+++|+.|+|++|......+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 55433333334555555555555553332223334455555555555555555443 34444555555555444333333
Q ss_pred ccccCCCCCCEEEecCCC
Q 007219 202 RTINGLRSLKTLHLSGCS 219 (612)
Q Consensus 202 ~~i~~l~~L~~L~Ls~c~ 219 (612)
..+..+++|+.|++++|.
T Consensus 173 ~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTTCTTCCEEECCSCC
T ss_pred HHHhCCCCCCEEEeeCCc
Confidence 334444444444444443
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=2.6e-16 Score=163.42 Aligned_cols=233 Identities=19% Similarity=0.192 Sum_probs=143.8
Q ss_pred cEEEccCCcCCcccCccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCccccc-ccccCCCCCEEecCC
Q 007219 69 ETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPS-TISALKYLSTLNLSG 146 (612)
Q Consensus 69 ~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~ 146 (612)
++++.+++. ++.+|..+ .+++++|+|++|.|+.+|. .+.++++|++|+|++|...+.+|. .+..+++|+++...+
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 456666543 66777654 3678888888888888886 478888888888888877776664 356777777654444
Q ss_pred CCCCccc-hhhhhccccccEEEccCcCCCCCCh-hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCccc
Q 007219 147 LWKLREF-PEIVESMEQLLELHLEGTAIRGLPA-SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNV 224 (612)
Q Consensus 147 ~~~l~~~-p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 224 (612)
+..+..+ |..+..+++|++|++++|.+..+|. .+....++..|++.++..+..++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~--------------------- 147 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN--------------------- 147 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT---------------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc---------------------
Confidence 3344443 4566677777777777777766553 2233444555555554444444321
Q ss_pred ccccCCC-CCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCC-CCCCCcccEEeccCCCCCCCCCCc-cccC
Q 007219 225 PENLGKV-ESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS-LSGLYCLRKLDISDCNLGEGAIPS-DIGH 301 (612)
Q Consensus 225 p~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~ip~-~l~~ 301 (612)
.+..+ ..++.|++++|.... ++. .....+|+.|++++++.. +.+|. .+..
T Consensus 148 --~f~~~~~~l~~L~L~~N~i~~------------------------i~~~~f~~~~L~~l~l~~~n~l-~~i~~~~f~~ 200 (350)
T 4ay9_X 148 --SFVGLSFESVILWLNKNGIQE------------------------IHNSAFNGTQLDELNLSDNNNL-EELPNDVFHG 200 (350)
T ss_dssp --SSTTSBSSCEEEECCSSCCCE------------------------ECTTSSTTEEEEEEECTTCTTC-CCCCTTTTTT
T ss_pred --chhhcchhhhhhccccccccC------------------------CChhhccccchhHHhhccCCcc-cCCCHHHhcc
Confidence 12222 234555555544221 111 223456888888765443 33654 5688
Q ss_pred cCCCCEEeccCCCccccchhhhccccccccccccccccccCCCCC--CCccEEec
Q 007219 302 LCSLKELYLSRNSFVSLPASIIHLSKLGKMVLEDCKRLQSLPQPP--PSIVSIRV 354 (612)
Q Consensus 302 l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l~~c~~L~~lp~lp--~sL~~L~i 354 (612)
+++|++|+|++|+++.+|... +.+|+.|.+.++..++.+|.+. ++|+.+++
T Consensus 201 l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp EECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred CcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 999999999999999998643 5566777777777777777532 34444443
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=9.4e-16 Score=151.38 Aligned_cols=176 Identities=20% Similarity=0.185 Sum_probs=152.7
Q ss_pred CCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCcccccccccCCCCCEEec
Q 007219 66 KSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNL 144 (612)
Q Consensus 66 ~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 144 (612)
...++++++++. +..+|..+. ++|++|+++++.+..++. .+..+++|++|++++|......+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 467889999875 777887554 689999999999997765 6899999999999999876666667899999999999
Q ss_pred CCCCCCccchhhhhccccccEEEccCcCCCCCChh-hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcc
Q 007219 145 SGLWKLREFPEIVESMEQLLELHLEGTAIRGLPAS-IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKN 223 (612)
Q Consensus 145 ~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 223 (612)
++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|......+..+..+++|+.|++++|...+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99977666667889999999999999999998865 58899999999999976655555789999999999999988777
Q ss_pred cccccCCCCCCcEEeccCCCC
Q 007219 224 VPENLGKVESLEVLDISGCKG 244 (612)
Q Consensus 224 lp~~l~~l~~L~~L~l~~~~~ 244 (612)
.+..+..+++|+.|++++|..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCB
T ss_pred CHHHHhCCCCCCEEEeeCCce
Confidence 777899999999999999873
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=2.2e-17 Score=172.39 Aligned_cols=242 Identities=18% Similarity=0.138 Sum_probs=176.9
Q ss_pred CCCCCcCCccCCCCCCCCC-ccEEeccCCCCccccc----cccccCC-CccEEecCCCCCCccCC-CccC-C-----CCc
Q 007219 2 SLKHSENLIRTPDFSRVPN-LEQLILEGCTRLHEIH----PSLLVHK-KLIFLNLKGCTSLRALP-AKIF-M-----KSL 68 (612)
Q Consensus 2 ~Ls~~~~L~~~p~l~~l~~-L~~L~L~~c~~l~~i~----~si~~l~-~L~~L~L~~c~~l~~lp-~~~~-l-----~~L 68 (612)
+|++..--..+|++...+. |++|+|++|......+ ..+..++ +|++|+|++| .+.... ..+. + ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCc
Confidence 3555533335666655554 9999999987443333 5677888 9999999997 444443 2222 2 899
Q ss_pred cEEEccCCcCCcccCcc----ccCC-CCCCeeecCCcCCccccc-----cccc-CCCCcEEeccCCCCCc----cccccc
Q 007219 69 ETLVLSGCLKLKKFPDI----VGSM-ECLQELHLDGTDIKELPL-----SIEL-LSGLVRLTLYGCKNFE----RIPSTI 133 (612)
Q Consensus 69 ~~L~L~~c~~l~~~p~~----~~~l-~~L~~L~L~~~~i~~lp~-----~i~~-l~~L~~L~L~~~~~l~----~lp~~l 133 (612)
++|+|++|......+.. +..+ ++|++|++++|.++..+. .+.. ..+|++|++++|.... .++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999855444443 3344 899999999999986653 2344 3699999999987553 444555
Q ss_pred ccCC-CCCEEecCCCCCCccchhhh----hcc-ccccEEEccCcCCCC-----CChhhhcc-CCCcEEeecCCCCCCccc
Q 007219 134 SALK-YLSTLNLSGLWKLREFPEIV----ESM-EQLLELHLEGTAIRG-----LPASIEFL-SGLVLLNLKDCKNLKSLP 201 (612)
Q Consensus 134 ~~l~-~L~~L~L~~~~~l~~~p~~l----~~l-~~L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~c~~l~~lp 201 (612)
..++ +|++|++++|......+..+ ..+ ++|++|++++|.+.. ++..+... ++|+.|+|++|......+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 6665 99999999997666655444 444 699999999999987 67777764 599999999997665433
Q ss_pred ----ccccCCCCCCEEEecCCCC-------CcccccccCCCCCCcEEeccCCCC
Q 007219 202 ----RTINGLRSLKTLHLSGCSK-------LKNVPENLGKVESLEVLDISGCKG 244 (612)
Q Consensus 202 ----~~i~~l~~L~~L~Ls~c~~-------l~~lp~~l~~l~~L~~L~l~~~~~ 244 (612)
..+..+++|+.|++++|.. ...++..+..+++|+.|++++|..
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 4456789999999999972 233456678899999999999874
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=3e-15 Score=164.38 Aligned_cols=193 Identities=22% Similarity=0.227 Sum_probs=109.1
Q ss_pred CccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCC
Q 007219 67 SLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSG 146 (612)
Q Consensus 67 ~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 146 (612)
+|+.|++++|. +..+|..+ .++|++|++++|.|+.+| ..+++|+.|++++|.. ..+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCC
Confidence 66777777665 34455544 256677777777666666 3456666666666543 23544 332 555555555
Q ss_pred CCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCccccc
Q 007219 147 LWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPE 226 (612)
Q Consensus 147 ~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 226 (612)
|.. ..+|. .+++|+.|++++|.++.+|. .+++|+.|++++|...+ +|.
T Consensus 130 N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~---------------------------~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 130 NQL-TMLPE---LPALLEYINADNNQLTMLPE---------------------------LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp SCC-SCCCC---CCTTCCEEECCSSCCSCCCC---------------------------CCTTCCEEECCSSCCSC-CCC
T ss_pred CcC-CCCCC---cCccccEEeCCCCccCcCCC---------------------------cCCCcCEEECCCCCCCC-cch
Confidence 532 22333 34455555555555544443 34445555555544322 444
Q ss_pred ccCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCC--CCCCCcccEEeccCCCCCCCCCCccccCcCC
Q 007219 227 NLGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPS--LSGLYCLRKLDISDCNLGEGAIPSDIGHLCS 304 (612)
Q Consensus 227 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~s 304 (612)
+. ++|+.|++++|.....+. ++. ....+.|+.|+|++|.+.. +|..+..+++
T Consensus 178 -l~--~~L~~L~Ls~N~L~~lp~---------------------~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~ 231 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLESLPA---------------------VPVRNHHSEETEIFFRCRENRITH--IPENILSLDP 231 (571)
T ss_dssp -CC--TTCCEEECCSSCCSSCCC---------------------CC--------CCEEEECCSSCCCC--CCGGGGGSCT
T ss_pred -hh--CCCCEEECcCCCCCchhh---------------------HHHhhhcccccceEEecCCCccee--cCHHHhcCCC
Confidence 33 555555555554221000 000 1112345999999999964 8998888999
Q ss_pred CCEEeccCCCcc-ccchhhhcccc
Q 007219 305 LKELYLSRNSFV-SLPASIIHLSK 327 (612)
Q Consensus 305 L~~L~Ls~n~l~-~lp~~i~~L~~ 327 (612)
|+.|+|++|.++ .+|..+..++.
T Consensus 232 L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCEEEeeCCcCCCcCHHHHHHhhc
Confidence 999999999997 67777776654
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=2e-15 Score=165.67 Aligned_cols=183 Identities=21% Similarity=0.295 Sum_probs=81.6
Q ss_pred CccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCC
Q 007219 20 NLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDG 99 (612)
Q Consensus 20 ~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~ 99 (612)
+|+.|++++|. +..+|..+. ++|++|+|++| .++.+| ..+++|++|++++|. +..+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 45555555432 333444332 44555555553 333444 124555555555543 222444 332 555555555
Q ss_pred cCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChh
Q 007219 100 TDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPAS 179 (612)
Q Consensus 100 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~ 179 (612)
|.++.+|. .+++|+.|++++|.. ..+|. .+++|++|++++|. +..+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 55555544 345555555555442 22333 34445555555542 222443 22 445555555555554444
Q ss_pred hhccCCC-------cEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccc
Q 007219 180 IEFLSGL-------VLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPEN 227 (612)
Q Consensus 180 i~~l~~L-------~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 227 (612)
+.. +| +.|+|++|... .+|..+..+++|+.|++++|...+.+|..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 322 33 44444444322 34444444444444444444444444433
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=3.6e-15 Score=142.73 Aligned_cols=177 Identities=18% Similarity=0.147 Sum_probs=119.8
Q ss_pred EecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccc-cccCCCCcEEeccCCCCC
Q 007219 48 LNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLS-IELLSGLVRLTLYGCKNF 126 (612)
Q Consensus 48 L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l 126 (612)
++.++ ..++.+|..+ .++|++|++++|......+..++++++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 12 v~c~~-~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 12 VECYS-QGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EECCS-SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEecC-CCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 34433 3445555433 45677777777664433334466777777777777777766654 466777777777776544
Q ss_pred cccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChh-hhccCCCcEEeecCCCCCCccccccc
Q 007219 127 ERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPAS-IEFLSGLVLLNLKDCKNLKSLPRTIN 205 (612)
Q Consensus 127 ~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~ 205 (612)
...+..+..+++|++|++++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|... +
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~ 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------C 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------C
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------c
Confidence 33333456777788888877755444445567788888888888888877664 677888888888887533 4
Q ss_pred CCCCCCEEEecCCCCCcccccccCCCCC
Q 007219 206 GLRSLKTLHLSGCSKLKNVPENLGKVES 233 (612)
Q Consensus 206 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~ 233 (612)
.+++|+.|+++.+...+.+|..++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 5667888888888888888887776654
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.7e-15 Score=143.74 Aligned_cols=149 Identities=15% Similarity=0.226 Sum_probs=70.6
Q ss_pred ccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcc-cccccccCCCCcEE
Q 007219 40 LVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKE-LPLSIELLSGLVRL 118 (612)
Q Consensus 40 ~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L 118 (612)
+.+++|+.|++++| .+..+|....+++|++|++++|. ...++ .+..+++|++|++++|.++. .|..+..+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45556666666653 34455522225566666666552 33222 34455555555555555553 34444555555555
Q ss_pred eccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecC
Q 007219 119 TLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKD 193 (612)
Q Consensus 119 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 193 (612)
++++|......|..+..+++|++|++++|..+..+| .+..+++|++|++++|.+..++ .+..+++|+.|++++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 555544433344444444455555554443333333 3444444444444444444443 333344444444433
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=5.6e-15 Score=149.23 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=129.2
Q ss_pred cccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEE
Q 007219 39 LLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRL 118 (612)
Q Consensus 39 i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 118 (612)
...+++|+.|++++| .+..++....+++|++|++++|. +..++. +.++++|++|++++|.++.+|. +..+++|+.|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCC-CcccChhHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 456777888888874 55666653337888888888876 344444 7788888888888888887765 7788888888
Q ss_pred eccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCC
Q 007219 119 TLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLK 198 (612)
Q Consensus 119 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~ 198 (612)
++++|.. ..++ .+..+++|+.|++++|... .+ ..+..+++|++|++++|.+..++. +..+++|+.|++++|...
T Consensus 118 ~L~~n~i-~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~- 191 (291)
T 1h6t_A 118 SLEHNGI-SDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS- 191 (291)
T ss_dssp ECTTSCC-CCCG-GGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-
T ss_pred ECCCCcC-CCCh-hhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC-
Confidence 8888764 3343 4778888888888888443 34 567888889999999888888776 888889999999888643
Q ss_pred cccccccCCCCCCEEEecCCCCC
Q 007219 199 SLPRTINGLRSLKTLHLSGCSKL 221 (612)
Q Consensus 199 ~lp~~i~~l~~L~~L~Ls~c~~l 221 (612)
.++ .+..+++|+.|++++|...
T Consensus 192 ~l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DLR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BCG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCh-hhccCCCCCEEECcCCccc
Confidence 455 4788899999999988644
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=8.1e-15 Score=140.21 Aligned_cols=124 Identities=19% Similarity=0.131 Sum_probs=53.9
Q ss_pred eecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCC
Q 007219 95 LHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIR 174 (612)
Q Consensus 95 L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~ 174 (612)
++.+++.++++|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+.
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 344444444444322 234444444444322222222344444555555444322222233444555555555555555
Q ss_pred CCChh-hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCC
Q 007219 175 GLPAS-IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSK 220 (612)
Q Consensus 175 ~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~ 220 (612)
.+|.. +..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 54432 34455555555555443332233344455555555555443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=1.3e-14 Score=146.47 Aligned_cols=168 Identities=22% Similarity=0.301 Sum_probs=139.4
Q ss_pred CCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEe
Q 007219 64 FMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLN 143 (612)
Q Consensus 64 ~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 143 (612)
.+++|++|++++|. +..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.. ..+|. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCChh-hccCCCCCEEE
Confidence 38889999999986 555654 7889999999999999998887 88999999999999864 44554 88899999999
Q ss_pred cCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcc
Q 007219 144 LSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKN 223 (612)
Q Consensus 144 L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 223 (612)
+++|.. ..+ ..+..+++|++|++++|.+..+ ..+..+++|+.|++++|......| +..+++|+.|++++|... .
T Consensus 119 L~~n~i-~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~ 192 (291)
T 1h6t_A 119 LEHNGI-SDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-D 192 (291)
T ss_dssp CTTSCC-CCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-B
T ss_pred CCCCcC-CCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC-C
Confidence 999854 444 4678899999999999999988 678899999999999987655433 889999999999998654 4
Q ss_pred cccccCCCCCCcEEeccCCC
Q 007219 224 VPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 224 lp~~l~~l~~L~~L~l~~~~ 243 (612)
++. +..+++|+.|++++|.
T Consensus 193 l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 193 LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGG-GTTCTTCSEEEEEEEE
T ss_pred Chh-hccCCCCCEEECcCCc
Confidence 554 8889999999999886
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=9e-18 Score=185.08 Aligned_cols=208 Identities=19% Similarity=0.106 Sum_probs=138.8
Q ss_pred cCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEE
Q 007219 87 GSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLEL 166 (612)
Q Consensus 87 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L 166 (612)
...++|+.|+|++|.++.+|..++++++|+.|++++|..+..+|..+. .+...+..|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhcccC
Confidence 567889999999999999999999999999999876543222222111 111234456666666666666
Q ss_pred E-ccCcCCCCCCh------hhhc--cCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEE
Q 007219 167 H-LEGTAIRGLPA------SIEF--LSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVL 237 (612)
Q Consensus 167 ~-L~~~~i~~lp~------~i~~--l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 237 (612)
+ ++.+.+..++. .+.. ...|+.|++++|... .+|. ++.+++|+.|++++|... .+|..++.+++|+.|
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEE
Confidence 6 45444333322 1111 135777888777543 4665 777788888888877655 677777777888888
Q ss_pred eccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCCccccCcCCCCEEeccCCCccc
Q 007219 238 DISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIPSDIGHLCSLKELYLSRNSFVS 317 (612)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~l~~ 317 (612)
++++|.... +|.++.+++|+.|+|++|.+.....|..++.+++|+.|+|++|.++.
T Consensus 492 ~Ls~N~l~~------------------------lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 492 QASDNALEN------------------------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp ECCSSCCCC------------------------CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ECCCCCCCC------------------------CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 877765321 23466778888888888888542128888888889999999988887
Q ss_pred cchhh----hccccccccc
Q 007219 318 LPASI----IHLSKLGKMV 332 (612)
Q Consensus 318 lp~~i----~~L~~L~~L~ 332 (612)
+|..+ ..+++|+.|+
T Consensus 548 ~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEE
T ss_pred CccHHHHHHHHCcccCccC
Confidence 76543 3356666664
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=8.5e-15 Score=162.37 Aligned_cols=176 Identities=21% Similarity=0.248 Sum_probs=94.5
Q ss_pred ccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCC
Q 007219 10 IRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSM 89 (612)
Q Consensus 10 ~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l 89 (612)
..+..+..+++|+.|++++|. +..++ .+..+++|+.|+|++| .+..++....+++|+.|+|++|. +..+| .+..+
T Consensus 34 ~~~~~~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l 108 (605)
T 1m9s_A 34 TDAVTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKDLS-SLKDL 108 (605)
T ss_dssp TSEECHHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCT-TSTTC
T ss_pred ccccchhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCCCh-hhccC
Confidence 334444555666666666543 33333 4566666666666654 34444442226666666666654 33333 35556
Q ss_pred CCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEcc
Q 007219 90 ECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLE 169 (612)
Q Consensus 90 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~ 169 (612)
++|++|+|++|.+..++ .+..+++|+.|+|++|... .+ ..+..+++|+.|+|++|......| +..+++|++|+|+
T Consensus 109 ~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 66666666666666553 3555666666666665432 22 335556666666666553333223 5555666666666
Q ss_pred CcCCCCCChhhhccCCCcEEeecCCCC
Q 007219 170 GTAIRGLPASIEFLSGLVLLNLKDCKN 196 (612)
Q Consensus 170 ~~~i~~lp~~i~~l~~L~~L~L~~c~~ 196 (612)
+|.+..+| .+..+++|+.|+|++|..
T Consensus 184 ~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 184 KNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred CCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 66655553 355555666666655543
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=1.1e-14 Score=137.98 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=86.8
Q ss_pred CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEec
Q 007219 65 MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNL 144 (612)
Q Consensus 65 l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 144 (612)
+++|++|++++|. +..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 43 l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 5667777777665 34555 4666667777777766665554 4566666666666666554445555666666666666
Q ss_pred CCCCCCccchhhhhccccccEEEccCcC-CCCCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCC
Q 007219 145 SGLWKLREFPEIVESMEQLLELHLEGTA-IRGLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGC 218 (612)
Q Consensus 145 ~~~~~l~~~p~~l~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 218 (612)
++|......|..+..+++|++|++++|. +..+| .+..+++|+.|++++|.... ++ .+..+++|+.|++++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 6665555555666666666666666665 55554 45555555555555554322 22 3444445555555444
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.8e-14 Score=159.73 Aligned_cols=171 Identities=20% Similarity=0.224 Sum_probs=102.8
Q ss_pred cccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccccccCCCCcEE
Q 007219 39 LLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRL 118 (612)
Q Consensus 39 i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 118 (612)
+..+++|+.|++++| .+..+|....+++|+.|+|++|.. ..++. +..+++|+.|+|++|.+..+| .+..+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCTTGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCC-CCCCChHHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 456777777777764 355666433377777777777763 33333 667777777777777777665 46667777777
Q ss_pred eccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCC
Q 007219 119 TLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLK 198 (612)
Q Consensus 119 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~ 198 (612)
+|++|... .++ .+..+++|+.|+|++|... .+ ..+..+++|+.|+|++|.+..++. +..+++|+.|+|++|....
T Consensus 115 ~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 115 SLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ECTTSCCC-CCG-GGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred EecCCCCC-CCc-cccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC
Confidence 77766532 333 3566666666666666332 22 345566666666666666665544 5556666666666654332
Q ss_pred cccccccCCCCCCEEEecCCCC
Q 007219 199 SLPRTINGLRSLKTLHLSGCSK 220 (612)
Q Consensus 199 ~lp~~i~~l~~L~~L~Ls~c~~ 220 (612)
+| .+..+++|+.|+|++|..
T Consensus 190 -l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 190 -LR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -CG-GGTTCTTCSEEECCSEEE
T ss_pred -Ch-HHccCCCCCEEEccCCcC
Confidence 22 355555555555555543
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=9e-14 Score=134.27 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=91.5
Q ss_pred eeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCC
Q 007219 94 ELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAI 173 (612)
Q Consensus 94 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i 173 (612)
.++.+++.++++|..+. .+|+.|++++|......+..+..+++|+.|++++|......|..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34444444444444332 3455555555443222223455556666666666644444456666666667777777777
Q ss_pred CCCChh-hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 174 RGLPAS-IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 174 ~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
+.+|.. +..+++|+.|+|++|......|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 766654 4667777777777776666666677777778888887777666666667778888888888775
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=5.4e-14 Score=146.54 Aligned_cols=148 Identities=21% Similarity=0.153 Sum_probs=96.8
Q ss_pred cEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCcccc-CCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCC
Q 007219 46 IFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVG-SMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGC 123 (612)
Q Consensus 46 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~-~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~ 123 (612)
+++++++ +.++.+|..+ .+.++.|+|++|......+..+. ++++|++|+|++|.|+.++. .+..+++|+.|+|++|
T Consensus 21 ~~l~c~~-~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCS-SCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCC-CCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4566665 4566777643 45677888887764444445555 77888888888888887763 4777777777777777
Q ss_pred CCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhh----hccCCCcEEeecCCC
Q 007219 124 KNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASI----EFLSGLVLLNLKDCK 195 (612)
Q Consensus 124 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i----~~l~~L~~L~L~~c~ 195 (612)
......+..+..+++|+.|+|++|......|..+..+++|++|+|++|.+..+|..+ ..+++|+.|+|++|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 643333345667777777777777655555666777777777777777777766554 345555555555554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=2.5e-13 Score=132.04 Aligned_cols=149 Identities=23% Similarity=0.231 Sum_probs=82.2
Q ss_pred cEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccc-cccCCCCcEEeccCCC
Q 007219 46 IFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLS-IELLSGLVRLTLYGCK 124 (612)
Q Consensus 46 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 124 (612)
+.++.++ ..++.+|..+ .++|++|+|++|......|..+.++++|++|+|++|.++.+|.. +..+++|+.|+|++|.
T Consensus 22 ~~v~c~~-~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTT-SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccC-CCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4455554 4566666544 36677777777665555556666666666666666666666533 3445555555555443
Q ss_pred CCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcccccc
Q 007219 125 NFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLPRTI 204 (612)
Q Consensus 125 ~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i 204 (612)
. ....+..+..+++|++|++++|.+..+|..+..+++|+.|++++|......+..+
T Consensus 100 l------------------------~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 100 L------------------------TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp C------------------------CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred C------------------------CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 2 2222233444555555555555555555555555666666665554433333345
Q ss_pred cCCCCCCEEEecCCCC
Q 007219 205 NGLRSLKTLHLSGCSK 220 (612)
Q Consensus 205 ~~l~~L~~L~Ls~c~~ 220 (612)
..+++|+.|++++|..
T Consensus 156 ~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCTTCCEEECTTSCB
T ss_pred hCCCCCCEEEeeCCCc
Confidence 5556666666665543
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=3.8e-16 Score=172.08 Aligned_cols=210 Identities=16% Similarity=0.101 Sum_probs=131.7
Q ss_pred CCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCe
Q 007219 15 FSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQE 94 (612)
Q Consensus 15 l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~ 94 (612)
+...++|+.|+|++ +.+..+|.+++.+++|+.|+++++..+..+|.. +..+...+..|+.++++++|+.
T Consensus 345 ~~~~~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 345 SATDEQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp CSTTTTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred cccCccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHHHHhccc
Confidence 45677888888887 445678888888888888888654322111110 0011123344445555555555
Q ss_pred ee-cCCcCCccccc------cccc--CCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccE
Q 007219 95 LH-LDGTDIKELPL------SIEL--LSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLE 165 (612)
Q Consensus 95 L~-L~~~~i~~lp~------~i~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~ 165 (612)
|+ ++.+.+..++. .+.. ...|+.|++++|. +..+|. ++.+++|+.|++++|. +..+|..++.+++|+.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEV 490 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCE
T ss_pred CcchhhcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCE
Confidence 55 33333222221 0111 1247777777764 445665 7777778888887774 3477777778888888
Q ss_pred EEccCcCCCCCChhhhccCCCcEEeecCCCCCCcc-cccccCCCCCCEEEecCCCCCccccc---ccCCCCCCcEEec
Q 007219 166 LHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSL-PRTINGLRSLKTLHLSGCSKLKNVPE---NLGKVESLEVLDI 239 (612)
Q Consensus 166 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~---~l~~l~~L~~L~l 239 (612)
|++++|.++.+| .++.+++|+.|+|++|...+.. |..++.+++|+.|++++|...+..|. .+..+++|+.|++
T Consensus 491 L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888888777 7778888888888887765554 77788888888888888765544332 1234678887753
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=2.5e-13 Score=131.14 Aligned_cols=148 Identities=19% Similarity=0.189 Sum_probs=80.9
Q ss_pred cEEEccCCcCCcccCccccCCCCCCeeecCCcCCccccc--ccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCC
Q 007219 69 ETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPL--SIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSG 146 (612)
Q Consensus 69 ~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 146 (612)
++++++++. ++.+|..+. ..+++|++++|.++.++. .+..+++|+.|++++|..
T Consensus 14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i--------------------- 69 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--------------------- 69 (220)
T ss_dssp TEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC---------------------
T ss_pred CEeEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC---------------------
Confidence 355665544 444554332 234566666666655532 244555555555555443
Q ss_pred CCCCccchhhhhccccccEEEccCcCCCCCCh-hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccc
Q 007219 147 LWKLREFPEIVESMEQLLELHLEGTAIRGLPA-SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVP 225 (612)
Q Consensus 147 ~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 225 (612)
....+..+..+++|++|++++|.+..++. .+..+++|+.|+|++|......|..+..+++|+.|++++|...+..|
T Consensus 70 ---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 70 ---TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp ---CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred ---CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 22223344455555555555555555443 24555566666666655555555556666666666666666555556
Q ss_pred cccCCCCCCcEEeccCCC
Q 007219 226 ENLGKVESLEVLDISGCK 243 (612)
Q Consensus 226 ~~l~~l~~L~~L~l~~~~ 243 (612)
..+..+++|+.|++++|.
T Consensus 147 ~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTTTCTTCCEEECCSCC
T ss_pred HHhcCCCCCCEEEecCcC
Confidence 666667777777776665
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=2.4e-13 Score=131.24 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=98.8
Q ss_pred cEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccC-ccccCCCCCCeeecCCcCCccccc-ccccCCCCcEEeccCC
Q 007219 46 IFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFP-DIVGSMECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGC 123 (612)
Q Consensus 46 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~ 123 (612)
+.+++++ +.++.+|..+ .+.+++|+|++|......| ..+..+++|++|++++|.|+.++. .+..+++|+.|++++|
T Consensus 14 ~~l~~s~-n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCS-SCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCC-CCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5788888 5678888755 5678999999998554434 457899999999999999998875 6777888888888877
Q ss_pred CCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCC-ChhhhccCCCcEEeecCC
Q 007219 124 KNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGL-PASIEFLSGLVLLNLKDC 194 (612)
Q Consensus 124 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c 194 (612)
......+..+..+++|++|++++|......|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 65444444466666666666666644444455555555555555555555544 334444444444444443
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=2.8e-13 Score=130.75 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred EEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCccc-ccccccCCCCcEEeccCCCC
Q 007219 47 FLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKEL-PLSIELLSGLVRLTLYGCKN 125 (612)
Q Consensus 47 ~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~ 125 (612)
.+++++ +.++.+|..+ .++|+.|++++|......+..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|..
T Consensus 15 ~v~c~~-~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTT-SCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCC-CCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 444444 3455555533 25566666666553333333555566666666666666544 44455555555555555443
Q ss_pred Cccccc-ccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCCh-hhhccCCCcEEeecC
Q 007219 126 FERIPS-TISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPA-SIEFLSGLVLLNLKD 193 (612)
Q Consensus 126 l~~lp~-~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~ 193 (612)
. .+|. .+..+++|++|++++|......|..+..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 93 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred C-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 2 2222 23445555555555554333334444444555555555555444432 233333444444333
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=3.8e-14 Score=140.89 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=70.4
Q ss_pred CCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeec
Q 007219 18 VPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHL 97 (612)
Q Consensus 18 l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L 97 (612)
+.++..+++.++ .+.+++ .+..+++|++|++++| .++.+|....+++|++|++++|. +..+|. +.++++|++|++
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 333444455442 233333 3445555555555553 34444421124455555554443 222222 444444444444
Q ss_pred CCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCC
Q 007219 98 DGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLP 177 (612)
Q Consensus 98 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp 177 (612)
++|.++.+|.... ++|+.|++++|. +..++ .+..+++|++|++++|.++.++
T Consensus 93 ~~N~l~~l~~~~~--------------------------~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--------------------------ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp CSSCCSCCTTCCC--------------------------SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG
T ss_pred CCCccCCcCcccc--------------------------CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh
Confidence 4444444432111 344444444442 22222 2444455555555555555443
Q ss_pred hhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCC
Q 007219 178 ASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGC 218 (612)
Q Consensus 178 ~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 218 (612)
.+..+++|+.|++++|..... ..+..+++|+.|++++|
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 344445555555544433222 23334444444444443
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=3.5e-13 Score=130.94 Aligned_cols=150 Identities=21% Similarity=0.128 Sum_probs=118.6
Q ss_pred CCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCc
Q 007219 92 LQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGT 171 (612)
Q Consensus 92 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~ 171 (612)
-+.++.+++.+..+|..+. ++|+.|++++|......|..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3456666666666665443 67777777777655555666777888888888888553333456788999999999999
Q ss_pred CCCCCChh-hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCcEEeccCCCC
Q 007219 172 AIRGLPAS-IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCKG 244 (612)
Q Consensus 172 ~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 244 (612)
.++.+|.. +..+++|+.|++++|... .+|..+..+++|+.|++++|......+..+..+++|+.|++.+|..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99998765 688999999999998755 8899999999999999999977655556789999999999999873
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=7.5e-14 Score=138.72 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=116.4
Q ss_pred CCCCcCCccCCCCCCCCCccEEeccCCCCccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCccc
Q 007219 3 LKHSENLIRTPDFSRVPNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKF 82 (612)
Q Consensus 3 Ls~~~~L~~~p~l~~l~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~ 82 (612)
|++. .+..++.+..+++|++|++++| .+..++ .+..+++|+.|++++| .++.+|....+++|++|++++|. ++.+
T Consensus 26 l~~~-~i~~~~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N~-l~~l 100 (263)
T 1xeu_A 26 LGKQ-SVTDLVSQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRNR-LKNL 100 (263)
T ss_dssp HTCS-CTTSEECHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CSCC
T ss_pred hcCC-CcccccchhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCCc-cCCc
Confidence 4443 4677788889999999999997 566776 7899999999999985 57777773339999999999987 5566
Q ss_pred CccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcccc
Q 007219 83 PDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQ 162 (612)
Q Consensus 83 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~ 162 (612)
|.... ++|++|++++|.++.++ .+..+++|+.|++++|.. ..++ .+..+++|+.|++++|..... ..+..+++
T Consensus 101 ~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~ 173 (263)
T 1xeu_A 101 NGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173 (263)
T ss_dssp TTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCC
T ss_pred Ccccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcCcch--HHhccCCC
Confidence 66444 99999999999999876 477788888888887753 3343 355666666666666533322 34444555
Q ss_pred ccEEEccCcCCCCC
Q 007219 163 LLELHLEGTAIRGL 176 (612)
Q Consensus 163 L~~L~L~~~~i~~l 176 (612)
|+.|++++|.+...
T Consensus 174 L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 174 VNWIDLTGQKCVNE 187 (263)
T ss_dssp CCEEEEEEEEEECC
T ss_pred CCEEeCCCCcccCC
Confidence 55555555544433
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=3.8e-13 Score=140.06 Aligned_cols=172 Identities=20% Similarity=0.107 Sum_probs=136.3
Q ss_pred ccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccc-cc-cCCCCcEEeccCCCCCcccccccccCCCCCEEecC
Q 007219 68 LETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLS-IE-LLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLS 145 (612)
Q Consensus 68 L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 145 (612)
-++++++++. +..+|..+. ..++.|+|++|.|+.++.. +. .+.+|+.|+|++|......+..+..+++|++|+|+
T Consensus 20 ~~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3688888865 777887553 4689999999999988765 44 89999999999987655555678999999999999
Q ss_pred CCCCCccchhhhhccccccEEEccCcCCCCC-ChhhhccCCCcEEeecCCCCCCcccccc----cCCCCCCEEEecCCCC
Q 007219 146 GLWKLREFPEIVESMEQLLELHLEGTAIRGL-PASIEFLSGLVLLNLKDCKNLKSLPRTI----NGLRSLKTLHLSGCSK 220 (612)
Q Consensus 146 ~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i----~~l~~L~~L~Ls~c~~ 220 (612)
+|......+..+..+++|++|+|++|.+..+ |..+..+++|+.|+|++|.... +|..+ ..+++|+.|+|++|..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCC
Confidence 9965555566789999999999999999986 5678999999999999987554 55443 5789999999999876
Q ss_pred CcccccccCCCCC--CcEEeccCCC
Q 007219 221 LKNVPENLGKVES--LEVLDISGCK 243 (612)
Q Consensus 221 l~~lp~~l~~l~~--L~~L~l~~~~ 243 (612)
...-+..+..+++ |+.|++.+|.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CccCHHHhhhccHhhcceEEecCCC
Confidence 6544456666776 4788888876
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=6.1e-14 Score=159.23 Aligned_cols=190 Identities=19% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCccEEeccCCCCccccccccccCCCccEEecCC----CCCCccCCCccC-CCCccEEEccCCcCCcccCccccCCCCCC
Q 007219 19 PNLEQLILEGCTRLHEIHPSLLVHKKLIFLNLKG----CTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQ 93 (612)
Q Consensus 19 ~~L~~L~L~~c~~l~~i~~si~~l~~L~~L~L~~----c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~ 93 (612)
+.+++|+|.++ .+..++..+....+|..+++.+ ++.+...|..+. +++|+.|+|++|. +..+|..+.++++|+
T Consensus 173 ~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCS
T ss_pred CccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCC
Confidence 45667777653 3334444444444454444433 122333333333 6777777777776 446676666777777
Q ss_pred eeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCC
Q 007219 94 ELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAI 173 (612)
Q Consensus 94 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i 173 (612)
+|+|++|.|+.+|..++++++|+.|+|++|... .+|..++.+++|++|+|++| .+..+|..++.+++|++|+|++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 777777777777777777777777777777643 66777777777777777777 3456676777777777777777777
Q ss_pred CC-CChhhhccC-CCcEEeecCCCCCCcccccccCCCCCCEEEecCC
Q 007219 174 RG-LPASIEFLS-GLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGC 218 (612)
Q Consensus 174 ~~-lp~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 218 (612)
.. +|..+..+. .+..|+|++|.....+|. .|+.|+++.+
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 74 344443321 122355666666555553 3445555554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=6.8e-13 Score=122.16 Aligned_cols=81 Identities=25% Similarity=0.305 Sum_probs=32.4
Q ss_pred CCccEEEccCCcCC-cccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEec
Q 007219 66 KSLETLVLSGCLKL-KKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNL 144 (612)
Q Consensus 66 ~~L~~L~L~~c~~l-~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 144 (612)
++|++|++++|... ..+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.....+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34444444444322 23444444444444444444444443 33333444444444443332223332333333444444
Q ss_pred CCC
Q 007219 145 SGL 147 (612)
Q Consensus 145 ~~~ 147 (612)
++|
T Consensus 103 s~N 105 (168)
T 2ell_A 103 SGN 105 (168)
T ss_dssp BSS
T ss_pred cCC
Confidence 333
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=5e-14 Score=159.95 Aligned_cols=119 Identities=22% Similarity=0.176 Sum_probs=60.0
Q ss_pred ccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCChhhhccCC
Q 007219 106 PLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLPASIEFLSG 185 (612)
Q Consensus 106 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 185 (612)
|..+..+..|+.|+|++|.. ..+|..+..+++|++|+|++|... .+|..+..+++|++|+|++|.++.+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 33444444444444444442 244444444555555555555322 4555555555555555555555555555555555
Q ss_pred CcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccc
Q 007219 186 LVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPEN 227 (612)
Q Consensus 186 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 227 (612)
|+.|+|++|.. +.+|..++.+++|+.|+|++|...+.+|..
T Consensus 295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 55555555533 355555555666666666665555544443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=7.7e-13 Score=119.19 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=65.3
Q ss_pred CCccEEEccCCcCC-cccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEec
Q 007219 66 KSLETLVLSGCLKL-KKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNL 144 (612)
Q Consensus 66 ~~L~~L~L~~c~~l-~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 144 (612)
++|+.|++++|... +.+|..+..+++|++|++++|.++.+ ..++.+++|+.|++++|.....+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45555566555533 25555555566666666666665555 44555555555555555443334444444555555555
Q ss_pred CCCCCCcc-chhhhhccccccEEEccCcCCCCCCh----hhhccCCCcEEeec
Q 007219 145 SGLWKLRE-FPEIVESMEQLLELHLEGTAIRGLPA----SIEFLSGLVLLNLK 192 (612)
Q Consensus 145 ~~~~~l~~-~p~~l~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~ 192 (612)
++|..... .+..+..+++|++|++++|.+..+|. .+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55532221 12445555555555555555555443 34555555555443
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=1.1e-12 Score=120.82 Aligned_cols=131 Identities=20% Similarity=0.211 Sum_probs=93.5
Q ss_pred cCCCCCCeeecCCcCCc--ccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcccccc
Q 007219 87 GSMECLQELHLDGTDIK--ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLL 164 (612)
Q Consensus 87 ~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~ 164 (612)
...++|++|+++++.+. .+|..+..+++|+.|++++|.. ..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 44578999999999998 8888888889999999998873 444 5677888888888888866555777777788888
Q ss_pred EEEccCcCCCCCC--hhhhccCCCcEEeecCCCCCCccc---ccccCCCCCCEEEecCCC
Q 007219 165 ELHLEGTAIRGLP--ASIEFLSGLVLLNLKDCKNLKSLP---RTINGLRSLKTLHLSGCS 219 (612)
Q Consensus 165 ~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~lp---~~i~~l~~L~~L~Ls~c~ 219 (612)
+|++++|.++.+| ..+..+++|+.|++++|......+ ..+..+++|+.|++++|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8888888777765 566666666666666665433222 245555555555555553
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=1.3e-12 Score=117.59 Aligned_cols=127 Identities=22% Similarity=0.223 Sum_probs=94.0
Q ss_pred CCCCCCeeecCCcCCc--ccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccE
Q 007219 88 SMECLQELHLDGTDIK--ELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLE 165 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~ 165 (612)
..++|++|+++++.++ .+|..+..+++|+.|++++|.. ..+ ..+..+++|++|++++|.....+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999998 8888888899999999988854 344 55778888888888888666557777777888888
Q ss_pred EEccCcCCCCCC--hhhhccCCCcEEeecCCCCCCccc---ccccCCCCCCEEEec
Q 007219 166 LHLEGTAIRGLP--ASIEFLSGLVLLNLKDCKNLKSLP---RTINGLRSLKTLHLS 216 (612)
Q Consensus 166 L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~lp---~~i~~l~~L~~L~Ls 216 (612)
|++++|.++.+| ..++.+++|+.|++++|......+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888888764 667777777777777775433322 245556666666554
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=6.9e-12 Score=116.39 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=28.5
Q ss_pred ccCCCCCEEecCCCCCCccchh--hhhccccccEEEccCcCCCCCChh----hhccCCCcEEeecCC
Q 007219 134 SALKYLSTLNLSGLWKLREFPE--IVESMEQLLELHLEGTAIRGLPAS----IEFLSGLVLLNLKDC 194 (612)
Q Consensus 134 ~~l~~L~~L~L~~~~~l~~~p~--~l~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~c 194 (612)
..+++|++|++++|. +..+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 344444444444442 233333 444555555555555555555543 455555555555544
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=1.4e-11 Score=116.19 Aligned_cols=124 Identities=27% Similarity=0.285 Sum_probs=59.4
Q ss_pred CeeecCCcCCcccccccccCCCCcEEeccCCCCCccccc--ccccCCCCCEEecCCCCCCccchhhhhccccccEEEccC
Q 007219 93 QELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPS--TISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEG 170 (612)
Q Consensus 93 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~ 170 (612)
++++++++.++++|..+.. +|+.|++++|.. ..++. .+..+++|++|++++|......|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3455555555555543322 455555554432 22221 144555555555555544333444555555555555555
Q ss_pred cCCCCCCh-hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCC
Q 007219 171 TAIRGLPA-SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCS 219 (612)
Q Consensus 171 ~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 219 (612)
|.++.++. .+..+++|+.|++++|...+..|..+..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 55554432 24445555555555554444444444455555555555544
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.9e-11 Score=115.23 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=69.6
Q ss_pred cEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCc-cccCCCCCCeeecCCcCCccc-ccccccCCCCcEEeccCC
Q 007219 46 IFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPD-IVGSMECLQELHLDGTDIKEL-PLSIELLSGLVRLTLYGC 123 (612)
Q Consensus 46 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~ 123 (612)
+++++++ +.++.+|..+ ..+|++|++++|......+. .++.+++|++|+|++|.|+.+ |..+..+++|+.|++++|
T Consensus 11 ~~l~~s~-~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTT-SCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCC-CCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5666666 4556666543 34667777776653222222 356666666666666666655 455666666666666665
Q ss_pred CCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCC
Q 007219 124 KNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIR 174 (612)
Q Consensus 124 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~ 174 (612)
......+..+..+++|++|++++|......|..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 544433444555555555555555444444444444455555555544443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=3.3e-11 Score=113.59 Aligned_cols=104 Identities=24% Similarity=0.216 Sum_probs=47.9
Q ss_pred CCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccC
Q 007219 91 CLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEG 170 (612)
Q Consensus 91 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~ 170 (612)
+|++|++++|.|+.+|..+..+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 44444444444444444444444444444444443322233344455555555555433333334445555555555555
Q ss_pred cCCCCCCh-hhhccCCCcEEeecCC
Q 007219 171 TAIRGLPA-SIEFLSGLVLLNLKDC 194 (612)
Q Consensus 171 ~~i~~lp~-~i~~l~~L~~L~L~~c 194 (612)
|.++.+|. .+..+++|+.|++.+|
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCeeChhhhhcCccccEEEeCCC
Confidence 55555443 2344444444444443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=2.2e-11 Score=112.90 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=72.2
Q ss_pred cCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccch-hhhhccccccE
Q 007219 87 GSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFP-EIVESMEQLLE 165 (612)
Q Consensus 87 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p-~~l~~l~~L~~ 165 (612)
.++.+|++|++++|.++.+|......++|+.|++++|.. ..+ ..+..+++|++|++++|... .+| ..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l-~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC-Ccc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 345555666666665555543222222566666666543 223 34566666777777766433 333 34477777777
Q ss_pred EEccCcCCCCCCh--hhhccCCCcEEeecCCCCCCccccc----ccCCCCCCEEEecCC
Q 007219 166 LHLEGTAIRGLPA--SIEFLSGLVLLNLKDCKNLKSLPRT----INGLRSLKTLHLSGC 218 (612)
Q Consensus 166 L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~----i~~l~~L~~L~Ls~c 218 (612)
|++++|.+..+|. .+..+++|+.|++++|... .+|.. +..+++|+.|++++|
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 7777777777765 5666666666666666543 33332 444555555555444
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=1e-10 Score=110.28 Aligned_cols=100 Identities=26% Similarity=0.313 Sum_probs=58.5
Q ss_pred CeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcC
Q 007219 93 QELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTA 172 (612)
Q Consensus 93 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~ 172 (612)
++++++++.++++|..+. .+|+.|++++|.. ..+|..+..+++|+.|++++|......+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 567888888888886542 5677777777643 4555556666666666666664444444455555555555555555
Q ss_pred CCCCCh-hhhccCCCcEEeecCCC
Q 007219 173 IRGLPA-SIEFLSGLVLLNLKDCK 195 (612)
Q Consensus 173 i~~lp~-~i~~l~~L~~L~L~~c~ 195 (612)
++.++. .+..+++|+.|+|++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC
Confidence 555432 34444444444444443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.5e-10 Score=107.36 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=58.0
Q ss_pred CeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcC
Q 007219 93 QELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTA 172 (612)
Q Consensus 93 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~ 172 (612)
+.+++++++++.+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34444444444444322 2344455554443222222223445555555555543322223334555555555555555
Q ss_pred CCCCChh-hhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCC
Q 007219 173 IRGLPAS-IEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKL 221 (612)
Q Consensus 173 i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 221 (612)
++.+|.. +..+++|+.|++++|......+..+..+++|+.|++++|...
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5554432 345555555555555433222222344555555555555433
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=5.3e-13 Score=126.52 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=58.5
Q ss_pred cccCccccCCCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhc
Q 007219 80 KKFPDIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVES 159 (612)
Q Consensus 80 ~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~ 159 (612)
+.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.. ..+|..+..+++|++|++++|. +..+| .+..
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~ 113 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ-IASLS-GIEK 113 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCc-CCcCC-cccc
Confidence 334445566666666666666666665 555666666666665542 2444444444555555555552 22333 3455
Q ss_pred cccccEEEccCcCCCCCCh--hhhccCCCcEEeecCCC
Q 007219 160 MEQLLELHLEGTAIRGLPA--SIEFLSGLVLLNLKDCK 195 (612)
Q Consensus 160 l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~ 195 (612)
+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 5555555555555554433 34444444444444443
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=3e-11 Score=123.93 Aligned_cols=280 Identities=10% Similarity=0.031 Sum_probs=142.2
Q ss_pred CCCccEEeccCCCCcccccccccc-CCCccEEecCCCCCCc--cCCCccCCCCccEEEccCCcCCcccC-ccccC-----
Q 007219 18 VPNLEQLILEGCTRLHEIHPSLLV-HKKLIFLNLKGCTSLR--ALPAKIFMKSLETLVLSGCLKLKKFP-DIVGS----- 88 (612)
Q Consensus 18 l~~L~~L~L~~c~~l~~i~~si~~-l~~L~~L~L~~c~~l~--~lp~~~~l~~L~~L~L~~c~~l~~~p-~~~~~----- 88 (612)
++++++|.++|.-...++ ..+.. +++|++|||+++. +. ..+... ++.++.+.+..+ .+| ..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~-~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAE-IKMYSGKAGT-YPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEE-ECCEEESSSS-SGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcce-eEEecCcccc-cccccccccccc----ccCHHHhccccccc
Confidence 556888888774222222 22333 7788888888753 33 111111 223344444433 223 33455
Q ss_pred ---CCCCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCC---Ccc-chhhhhcc
Q 007219 89 ---MECLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWK---LRE-FPEIVESM 160 (612)
Q Consensus 89 ---l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~---l~~-~p~~l~~l 160 (612)
+++|+.|+|.. .++.++. .+..+.+|+.|++.++.....-+.+|....++..+....... ... -...+.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78888888877 7777764 377778888888877654444444455555454444433100 000 01122233
Q ss_pred cccc-EEEccCcCCCCCChhhh----ccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccccccCCCCCCc
Q 007219 161 EQLL-ELHLEGTAIRGLPASIE----FLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVPENLGKVESLE 235 (612)
Q Consensus 161 ~~L~-~L~L~~~~i~~lp~~i~----~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~ 235 (612)
..|+ .+.+.. ...++..+. ...++..+.+.+.-...........+++|+.|++++|.....-...+..+.+|+
T Consensus 176 ~~L~~~i~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 176 EPLETTIQVGA--MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCCEEEEEECT--TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccceeEEecC--CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 3333 222221 111222111 233444444443211111111111356777777776654333334566677777
Q ss_pred EEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCccc-EEeccCCCCCCCCCCccccCcCCCCEEeccCCC
Q 007219 236 VLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLR-KLDISDCNLGEGAIPSDIGHLCSLKELYLSRNS 314 (612)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~l~~~~ip~~l~~l~sL~~L~Ls~n~ 314 (612)
.+++.++-... .-..+.++.+|+ .+++.+ ++.. .-+..+..+++|+.|++++|+
T Consensus 254 ~l~l~~ni~~I-----------------------~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 254 KIKLPHNLKTI-----------------------GQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp EEECCTTCCEE-----------------------CTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSC
T ss_pred EEECCccccee-----------------------hHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCc
Confidence 77776541000 001256677777 777776 4421 123566777888888887887
Q ss_pred ccccch-hhhccccccccc
Q 007219 315 FVSLPA-SIIHLSKLGKMV 332 (612)
Q Consensus 315 l~~lp~-~i~~L~~L~~L~ 332 (612)
+..++. .+.++++|+.++
T Consensus 309 i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 309 ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTCTTCCCCEEE
T ss_pred cCccchhhhcCCcchhhhc
Confidence 777765 556666666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=3e-10 Score=105.24 Aligned_cols=99 Identities=21% Similarity=0.178 Sum_probs=44.0
Q ss_pred EEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccc-cccCCCCcEEeccCCCC
Q 007219 47 FLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLS-IELLSGLVRLTLYGCKN 125 (612)
Q Consensus 47 ~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~ 125 (612)
.+++++ +.++.+|..+ .++|++|++++|......+..++.+++|++|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 11 ~l~~~~-~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 11 EIRCNS-KGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EEECCS-SCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecC-CCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 344443 2344444322 34555555555543322223345555555555555555555433 34444555555544432
Q ss_pred CcccccccccCCCCCEEecCCC
Q 007219 126 FERIPSTISALKYLSTLNLSGL 147 (612)
Q Consensus 126 l~~lp~~l~~l~~L~~L~L~~~ 147 (612)
....+..+..+++|++|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCHHHhhCCcccCEEECcCC
Confidence 2222222334444444444444
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=2.2e-12 Score=122.28 Aligned_cols=143 Identities=23% Similarity=0.325 Sum_probs=116.2
Q ss_pred CCeeecCCc--CCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEcc
Q 007219 92 LQELHLDGT--DIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLE 169 (612)
Q Consensus 92 L~~L~L~~~--~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~ 169 (612)
|+.+.+.+. .++++|..+..+++|+.|++++|.. ..+| .+..+++|+.|++++|. +..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence 334444433 5667777899999999999999864 5577 78999999999999994 55788888889999999999
Q ss_pred CcCCCCCChhhhccCCCcEEeecCCCCCCccc-ccccCCCCCCEEEecCCCCCcccccc----------cCCCCCCcEEe
Q 007219 170 GTAIRGLPASIEFLSGLVLLNLKDCKNLKSLP-RTINGLRSLKTLHLSGCSKLKNVPEN----------LGKVESLEVLD 238 (612)
Q Consensus 170 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~----------l~~l~~L~~L~ 238 (612)
+|.+..+| .+..+++|+.|++++|.....-+ ..+..+++|+.|++++|...+..|.. +..+++|+.|+
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999987 68899999999999987544222 47889999999999999876665542 67889999987
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=3.1e-10 Score=116.31 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=41.1
Q ss_pred cccccEEEccCcCCCCCCh-hhhccCCCcEEeecCCCCCCccc-ccccCCCCCC-EEEecCCCCCccc-ccccCCCCCCc
Q 007219 160 MEQLLELHLEGTAIRGLPA-SIEFLSGLVLLNLKDCKNLKSLP-RTINGLRSLK-TLHLSGCSKLKNV-PENLGKVESLE 235 (612)
Q Consensus 160 l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~-~L~Ls~c~~l~~l-p~~l~~l~~L~ 235 (612)
+++|+.+++++|.++.+|. .+..+.+|+.+++.++ +..++ ..+.++++|+ .+++.+ .+..+ +..+..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 5555556655555555543 3455555666655554 33333 3345555565 555555 22232 24455555566
Q ss_pred EEeccCCC
Q 007219 236 VLDISGCK 243 (612)
Q Consensus 236 ~L~l~~~~ 243 (612)
.+++.++.
T Consensus 301 ~l~l~~n~ 308 (329)
T 3sb4_A 301 YVLATGDK 308 (329)
T ss_dssp EEEECSSC
T ss_pred EEEeCCCc
Confidence 65554443
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=3.7e-08 Score=103.51 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=47.3
Q ss_pred CccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccC-ccccCCCCCCeeecCCcCCcccccccccCCCCcEEecc
Q 007219 44 KLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFP-DIVGSMECLQELHLDGTDIKELPLSIELLSGLVRLTLY 121 (612)
Q Consensus 44 ~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 121 (612)
+|+.+.+... ++.++...+ -.+|+.+.+.. .++.++ .++.++.+|+.+++..+.++.++.......+|+.+.+.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 4555555542 445544433 23455555554 233333 34555666666666666666555443334555555554
Q ss_pred CCCCCccccc-ccccCCCCCEEecCC
Q 007219 122 GCKNFERIPS-TISALKYLSTLNLSG 146 (612)
Q Consensus 122 ~~~~l~~lp~-~l~~l~~L~~L~L~~ 146 (612)
.+ +..++. +|..+++|+.+.+..
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCT
T ss_pred Cc--hheehhhHhhCCCCCCEEecCC
Confidence 32 233322 244455555555543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=5.4e-09 Score=96.58 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=39.2
Q ss_pred eeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCC
Q 007219 94 ELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAI 173 (612)
Q Consensus 94 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i 173 (612)
.++++++.++++|..+. .+|+.|++++|......|..+..+++|++|+|++|......+..+..+++|++|++++|.+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 44444444444444332 3444444444433222233344444444444444422211112233444444444444444
Q ss_pred CCCChh-hhccCCCcEEeecCC
Q 007219 174 RGLPAS-IEFLSGLVLLNLKDC 194 (612)
Q Consensus 174 ~~lp~~-i~~l~~L~~L~L~~c 194 (612)
..+|.. +..+++|+.|+|++|
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS
T ss_pred ceeCHHHhccccCCCEEEeCCC
Confidence 444332 333444444444333
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=6.1e-09 Score=95.79 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=41.7
Q ss_pred CeeecCCcCCcccccccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcC
Q 007219 93 QELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTA 172 (612)
Q Consensus 93 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~ 172 (612)
+.++++++.++++|..+ ..+|+.|++++|......|..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 34444444444444433 1344444444443322223334444444444444443222222233444444444444444
Q ss_pred CCCCCh-hhhccCCCcEEeecCC
Q 007219 173 IRGLPA-SIEFLSGLVLLNLKDC 194 (612)
Q Consensus 173 i~~lp~-~i~~l~~L~~L~L~~c 194 (612)
++.+|. .+..+++|+.|+|++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhcCCCCCCEEEeCCC
Confidence 444443 2344444444444443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=9.2e-09 Score=94.60 Aligned_cols=101 Identities=23% Similarity=0.258 Sum_probs=62.2
Q ss_pred ccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccc-cccCCCCcEEeccCC
Q 007219 45 LIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLS-IELLSGLVRLTLYGC 123 (612)
Q Consensus 45 L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 123 (612)
.+.+++++ +.++.+|..+ .++|++|+|++|...+..|..+.++++|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~-n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCC-CCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45677776 4566777654 47777777777765555566677777777777777777766654 356666666666665
Q ss_pred CCCcccccccccCCCCCEEecCCC
Q 007219 124 KNFERIPSTISALKYLSTLNLSGL 147 (612)
Q Consensus 124 ~~l~~lp~~l~~l~~L~~L~L~~~ 147 (612)
......+..+..+++|+.|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 432222223455555555555554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=1.1e-08 Score=94.41 Aligned_cols=99 Identities=23% Similarity=0.332 Sum_probs=60.4
Q ss_pred cEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcccccc-cccCCCCcEEeccCCC
Q 007219 46 IFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKELPLS-IELLSGLVRLTLYGCK 124 (612)
Q Consensus 46 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 124 (612)
+.+++++ +.++.+|..+ .++|++|+|++|......|..++++++|++|+|++|.|+.+|.. +..+++|+.|+|++|.
T Consensus 15 ~~l~~~~-n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCS-SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCC-CCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4566666 4556677654 36777777777765555566677777777777777777777654 3566666666666654
Q ss_pred CCccccc-ccccCCCCCEEecCCC
Q 007219 125 NFERIPS-TISALKYLSTLNLSGL 147 (612)
Q Consensus 125 ~l~~lp~-~l~~l~~L~~L~L~~~ 147 (612)
. ..+|. .+..+++|+.|++++|
T Consensus 93 l-~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 L-KSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp C-CCCCTTTTTTCTTCSEEECCSS
T ss_pred c-ceeCHHHhccccCCCEEEeCCC
Confidence 3 23333 2444555555555554
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=1e-07 Score=100.13 Aligned_cols=212 Identities=15% Similarity=0.217 Sum_probs=157.5
Q ss_pred CCCCCCCccEEeccCCCCccccccc-cccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccCccccCCC
Q 007219 14 DFSRVPNLEQLILEGCTRLHEIHPS-LLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFPDIVGSME 90 (612)
Q Consensus 14 ~l~~l~~L~~L~L~~c~~l~~i~~s-i~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p~~~~~l~ 90 (612)
.|..+ +|+++.+.. ++..|... +.+ .+|+.+.+.. .++.++...+ |++|+.+++.++. +..++.......
T Consensus 131 aF~~~-~L~~i~l~~--~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~ 203 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNE--GLKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYA 203 (401)
T ss_dssp TTTTC-CCSEEECCT--TCCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTC
T ss_pred hcccC-CccEEEeCC--CccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeec
Confidence 37775 799999875 36677653 444 5799999985 6778887665 8999999999865 666665544478
Q ss_pred CCCeeecCCcCCccccc-ccccCCCCcEEeccCCCCCcccccc-cccCCCCCEEecCCCCCCccc-hhhhhccccccEEE
Q 007219 91 CLQELHLDGTDIKELPL-SIELLSGLVRLTLYGCKNFERIPST-ISALKYLSTLNLSGLWKLREF-PEIVESMEQLLELH 167 (612)
Q Consensus 91 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~~-p~~l~~l~~L~~L~ 167 (612)
+|+.+.+.. .++.++. .+.++.+|+.+.+..+ +..++.. |.. .+|+.+.+... +..+ ...|.++++|+.+.
T Consensus 204 ~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 204 GIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEE
T ss_pred ccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEE
Confidence 999999984 4777764 5788999999999863 4555544 444 78999999543 4444 56788999999999
Q ss_pred ccCcCCC-----CCC-hhhhccCCCcEEeecCCCCCCccc-ccccCCCCCCEEEecCCCCCccc-ccccCCCCCCcEEec
Q 007219 168 LEGTAIR-----GLP-ASIEFLSGLVLLNLKDCKNLKSLP-RTINGLRSLKTLHLSGCSKLKNV-PENLGKVESLEVLDI 239 (612)
Q Consensus 168 L~~~~i~-----~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~l 239 (612)
+.++.+. .++ ..+..+++|+.+.+.+. +..++ ..+.++++|+.+.|..+ +..+ ...+..+ +|+.+.+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEE
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEE
Confidence 9887765 343 56788999999999852 55554 46778999999999654 4444 4567778 9999999
Q ss_pred cCCC
Q 007219 240 SGCK 243 (612)
Q Consensus 240 ~~~~ 243 (612)
.++.
T Consensus 353 ~~n~ 356 (401)
T 4fdw_A 353 EGTT 356 (401)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 8875
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=1.5e-09 Score=113.02 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=41.9
Q ss_pred ccccEEEccCcCCCC-----CChhhhccCCCcEEeecCCCCCC----cccccccCCCCCCEEEecCCCCCcc----cccc
Q 007219 161 EQLLELHLEGTAIRG-----LPASIEFLSGLVLLNLKDCKNLK----SLPRTINGLRSLKTLHLSGCSKLKN----VPEN 227 (612)
Q Consensus 161 ~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~~----lp~~ 227 (612)
++|++|++++|.++. ++..+...++|+.|+|++|.... .++..+...++|++|+|++|..... ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445555555554432 33333445555555555554321 2233444555666666666654432 3333
Q ss_pred cCCCCCCcEEeccCCC
Q 007219 228 LGKVESLEVLDISGCK 243 (612)
Q Consensus 228 l~~l~~L~~L~l~~~~ 243 (612)
+...++|+.|++++|.
T Consensus 235 L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 235 AREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHCSSCCEEECTTSS
T ss_pred HHhCCCCCEEeccCCC
Confidence 4455667777777665
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=2.5e-09 Score=111.35 Aligned_cols=182 Identities=16% Similarity=0.045 Sum_probs=119.2
Q ss_pred CCCCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCccCC-----CccC--CCCccEEEccCCcCCcccC-cccc
Q 007219 17 RVPNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLRALP-----AKIF--MKSLETLVLSGCLKLKKFP-DIVG 87 (612)
Q Consensus 17 ~l~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~~lp-----~~~~--l~~L~~L~L~~c~~l~~~p-~~~~ 87 (612)
.+|..+.+++..|-.-.+-.. .-...++|+.|+|++|. +.... ..+. .++|++|+|++|....... ....
T Consensus 45 ~~~~~~~lnl~~cl~e~~~~~l~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 123 (372)
T 3un9_A 45 VLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123 (372)
T ss_dssp CSCHHHHHHHHHHHHHHHTHHHHHHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH
T ss_pred CCChhhhHHHHHHHHHhcCHHHHHHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH
Confidence 345556666665533111110 01235678889998865 33211 1111 3689999999887543322 2234
Q ss_pred CCCCCCeeecCCcCCccc-----cccc-ccCCCCcEEeccCCCCCc----ccccccccCCCCCEEecCCCCCCcc----c
Q 007219 88 SMECLQELHLDGTDIKEL-----PLSI-ELLSGLVRLTLYGCKNFE----RIPSTISALKYLSTLNLSGLWKLRE----F 153 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i~~l-----p~~i-~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~~l~~----~ 153 (612)
.+++|++|+|++|.+... ...+ ....+|+.|+|++|.... .++..+...++|++|+|++|..... +
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 567889999999988732 2223 246789999999986432 3455567788999999999964432 4
Q ss_pred hhhhhccccccEEEccCcCCCC-----CChhhhccCCCcEEeecCCCCCCc
Q 007219 154 PEIVESMEQLLELHLEGTAIRG-----LPASIEFLSGLVLLNLKDCKNLKS 199 (612)
Q Consensus 154 p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~ 199 (612)
+..+...++|++|++++|.++. +...+...++|+.|+|++|.....
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 5667788899999999999885 455666789999999999975543
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=1.7e-06 Score=90.68 Aligned_cols=297 Identities=14% Similarity=0.152 Sum_probs=147.9
Q ss_pred CCCCCCCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccC-ccccCC
Q 007219 14 DFSRVPNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFP-DIVGSM 89 (612)
Q Consensus 14 ~l~~l~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p-~~~~~l 89 (612)
+|.++.+|+++.|. ..+..|.. ++.++.+|+.+++.. .++.++...+ +.+|+.+.+... +..+. .++.++
T Consensus 66 AF~~c~~L~~i~lp--~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~ 139 (394)
T 4fs7_A 66 AFQGCRKVTEIKIP--STVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTCTTEEEEECC--TTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTC
T ss_pred HhhCCCCceEEEeC--CCccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc--eeeecceeeecc
Confidence 47788888888886 34666654 567788888888865 3556665444 666666555432 22221 222222
Q ss_pred CCCCeeecCCcCCccc-ccccccCCCCcEEeccCCCCCcccc-cccccCCCCCEEecCCCCCCccc-hhhhhccccccEE
Q 007219 90 ECLQELHLDGTDIKEL-PLSIELLSGLVRLTLYGCKNFERIP-STISALKYLSTLNLSGLWKLREF-PEIVESMEQLLEL 166 (612)
Q Consensus 90 ~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~-p~~l~~l~~L~~L 166 (612)
..+. ..+.. .+..+ ...+.++.+|+.+.+... ...++ ..+..+.+|+.+.+..+ +..+ ...+.++..|+.+
T Consensus 140 ~~~~-~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 140 DFKE-ITIPE-GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCSE-EECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBC
T ss_pred cccc-cccCc-cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhcccccccee
Confidence 2211 11111 11111 123555566666666532 12222 23445555666555433 2221 2334445555555
Q ss_pred EccCcCCCCCChhhhccCCCcEEeecCCCCCCccc-ccccCCCCCCEEEecCCCCCcccccc------------------
Q 007219 167 HLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSLP-RTINGLRSLKTLHLSGCSKLKNVPEN------------------ 227 (612)
Q Consensus 167 ~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~------------------ 227 (612)
.+..+.. .+........+|+.+.+.+. ...+. ..+..+..|+.+.+..+. ...-...
T Consensus 214 ~~~~~~~-~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~ 289 (394)
T 4fs7_A 214 EFPNSLY-YLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP 289 (394)
T ss_dssp CCCTTCC-EECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC
T ss_pred ecCCCce-EeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec
Confidence 4433211 11222222334444444321 11111 123344444444443321 1111112
Q ss_pred ---cCCCCCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCC-CccccCcC
Q 007219 228 ---LGKVESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAI-PSDIGHLC 303 (612)
Q Consensus 228 ---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~i-p~~l~~l~ 303 (612)
+..+.+|+.+.+...- ....-..+.++.+|+.++|... +. .+ ...+..++
T Consensus 290 ~~~F~~~~~L~~i~l~~~i-----------------------~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~ 343 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDSV-----------------------KFIGEEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCT 343 (394)
T ss_dssp TTTTTTCTTCCEEEECTTC-----------------------CEECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCT
T ss_pred ccccccccccccccccccc-----------------------ceechhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCC
Confidence 3334444444443211 0011122778889999998654 32 23 34677899
Q ss_pred CCCEEeccCCCccccch-hhhccccccccccccccccccCCCCCCCccEEeccCCCCccee
Q 007219 304 SLKELYLSRNSFVSLPA-SIIHLSKLGKMVLEDCKRLQSLPQPPPSIVSIRVDGCTSLETI 363 (612)
Q Consensus 304 sL~~L~Ls~n~l~~lp~-~i~~L~~L~~L~l~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l 363 (612)
+|+.+.+..+ ++.+.. .+.++++|+.+.+... ++.+. -...+|++|+.+
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~--------~~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYR--------YDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGG--------GGBCTTCEEEEE
T ss_pred CCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhh--------heecCCCCCcEE
Confidence 9999999876 776654 6778888888887643 33321 135789998876
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=1.6e-07 Score=96.65 Aligned_cols=83 Identities=19% Similarity=0.147 Sum_probs=39.1
Q ss_pred EeccCCCCccccccccccCCCccEEecCCCCCCccCCCc-cC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcC
Q 007219 24 LILEGCTRLHEIHPSLLVHKKLIFLNLKGCTSLRALPAK-IF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTD 101 (612)
Q Consensus 24 L~L~~c~~l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~ 101 (612)
+++++...+..+|. +..+++|+.|+|++++.++.+|.. +. +++|++|+|++|......|..+.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444324445555 555555555555543444444432 22 4555555555554333333444555555555555555
Q ss_pred Cccccc
Q 007219 102 IKELPL 107 (612)
Q Consensus 102 i~~lp~ 107 (612)
++.+|.
T Consensus 92 l~~~~~ 97 (347)
T 2ifg_A 92 LESLSW 97 (347)
T ss_dssp CSCCCS
T ss_pred cceeCH
Confidence 554443
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=2.6e-06 Score=89.33 Aligned_cols=299 Identities=12% Similarity=0.084 Sum_probs=156.6
Q ss_pred ccccCCCccEEecCCCCCCccCCCccC--CCCccEEEccCCcCCcccC-ccccCCCCCCeeecCCcCCcccc-cccccCC
Q 007219 38 SLLVHKKLIFLNLKGCTSLRALPAKIF--MKSLETLVLSGCLKLKKFP-DIVGSMECLQELHLDGTDIKELP-LSIELLS 113 (612)
Q Consensus 38 si~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~ 113 (612)
++..+.+|+.+.|.. .++.++...+ |.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ +..+. ..+....
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 455677888888864 4667766554 778888888653 44443 35667777777666543 33332 2233333
Q ss_pred CCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCCCCCC-hhhhccCCCcEEeec
Q 007219 114 GLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAIRGLP-ASIEFLSGLVLLNLK 192 (612)
Q Consensus 114 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 192 (612)
.+......... ..-..++..+++|+.+.+... ....-...+.++.+|+.+.+..+ ++.++ ..+..+..|+.+.+.
T Consensus 141 ~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCcccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 22222222111 111234667788888888653 22222345677788888877654 44433 345566667666655
Q ss_pred CCCCCCcccccccCCCCCCEEEecCCCCCccc-ccccCCCCCCcEEeccCCCCCcccCcccccccce-ecccCCCCcccc
Q 007219 193 DCKNLKSLPRTINGLRSLKTLHLSGCSKLKNV-PENLGKVESLEVLDISGCKGLLQSTSWFLHFPIT-LIRRNSDPVAWR 270 (612)
Q Consensus 193 ~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 270 (612)
+.. ..+........+|+.+.+... ...+ ...+..+.+|+.+.+..+........ +.....+ ....... ...
T Consensus 217 ~~~--~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~-F~~~~~l~~~~~~~~--~i~ 289 (394)
T 4fs7_A 217 NSL--YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSL-FYNCSGLKKVIYGSV--IVP 289 (394)
T ss_dssp TTC--CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCT-TTTCTTCCEEEECSS--EEC
T ss_pred CCc--eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccc-cccccccceeccCce--eec
Confidence 432 223333345567888877542 2222 23455677888887765432111111 1000000 0000000 000
Q ss_pred CCCCCCCCcccEEeccCCCCCCCCCC-ccccCcCCCCEEeccCCCccccc-hhhhccccccccccccccccccCCCCCCC
Q 007219 271 FPSLSGLYCLRKLDISDCNLGEGAIP-SDIGHLCSLKELYLSRNSFVSLP-ASIIHLSKLGKMVLEDCKRLQSLPQPPPS 348 (612)
Q Consensus 271 l~~l~~l~~L~~L~Ls~~~l~~~~ip-~~l~~l~sL~~L~Ls~n~l~~lp-~~i~~L~~L~~L~l~~c~~L~~lp~lp~s 348 (612)
-..+..+.+|+.+.+..+ +. .++ ..+..+++|+.++|..+ ++.+. ..+.++++|+.+.+. .+
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp------------~~ 353 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP------------LS 353 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC------------TT
T ss_pred cccccccccccccccccc-cc--eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC------------cc
Confidence 112556777787777654 21 132 34666778888887543 55554 345555666655543 33
Q ss_pred ccEEe---ccCCCCcceecCccc
Q 007219 349 IVSIR---VDGCTSLETISCVLK 368 (612)
Q Consensus 349 L~~L~---i~~C~~L~~l~~~~~ 368 (612)
++.+. ..+|++|+.+..+..
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEehHHHhhCCCCCCEEEECCC
Confidence 44332 358888888764443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=1.5e-07 Score=96.95 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=46.4
Q ss_pred ecCCc-CCcccccccccCCCCcEEeccCCCCCcccc-cccccCCCCCEEecCCCCCCccchhhhhccccccEEEccCcCC
Q 007219 96 HLDGT-DIKELPLSIELLSGLVRLTLYGCKNFERIP-STISALKYLSTLNLSGLWKLREFPEIVESMEQLLELHLEGTAI 173 (612)
Q Consensus 96 ~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L~L~~~~i 173 (612)
+.+++ .++.+|. +..+.+|+.|+|+++..+..+| ..|..+++|+.|+|++|......|..+.++++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 34443 4444444 4444444444444311222222 3345555555555555543333444555566666666666666
Q ss_pred CCCChhhhccCCCcEEeecCC
Q 007219 174 RGLPASIEFLSGLVLLNLKDC 194 (612)
Q Consensus 174 ~~lp~~i~~l~~L~~L~L~~c 194 (612)
..+|..+.....|+.|+|.+|
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSS
T ss_pred ceeCHHHcccCCceEEEeeCC
Confidence 665544322222455544444
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=4.6e-08 Score=101.16 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=87.0
Q ss_pred ccccccCCCccEEecCCCCC----C-----ccCCCccC-CCCccEEEccCCcCCcccCccccCCCCCCeeecCCcCCcc-
Q 007219 36 HPSLLVHKKLIFLNLKGCTS----L-----RALPAKIF-MKSLETLVLSGCLKLKKFPDIVGSMECLQELHLDGTDIKE- 104 (612)
Q Consensus 36 ~~si~~l~~L~~L~L~~c~~----l-----~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~- 104 (612)
..++..+++|+.|.+.+... + ..+...+. +|+|+.|.|++|... .++. + .+++|++|+|..+.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 34466778888888865321 1 01211112 678888888877433 2333 2 37788888887776652
Q ss_pred cccccc--cCCCCcEEeccCCCC-------Cccccccc--ccCCCCCEEecCCCCCCccchhhhh---ccccccEEEccC
Q 007219 105 LPLSIE--LLSGLVRLTLYGCKN-------FERIPSTI--SALKYLSTLNLSGLWKLREFPEIVE---SMEQLLELHLEG 170 (612)
Q Consensus 105 lp~~i~--~l~~L~~L~L~~~~~-------l~~lp~~l--~~l~~L~~L~L~~~~~l~~~p~~l~---~l~~L~~L~L~~ 170 (612)
....+. .+++|++|+|..+.+ ...+...+ ..+++|+.|++.+|......+..+. .+++|++|+|+.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 112222 577888887753211 11122222 2467777777777755433333332 356777777777
Q ss_pred cCCCC-----CChhhhccCCCcEEeecCCC
Q 007219 171 TAIRG-----LPASIEFLSGLVLLNLKDCK 195 (612)
Q Consensus 171 ~~i~~-----lp~~i~~l~~L~~L~L~~c~ 195 (612)
|.+.. ++..+.++++|+.|++++|.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 66654 33444555666666666554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=1.1e-07 Score=98.31 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=108.7
Q ss_pred CCCCCccEEeccCCCC---------ccccccccccCCCccEEecCCCCCCccCCCccCCCCccEEEccCCcCCcccCccc
Q 007219 16 SRVPNLEQLILEGCTR---------LHEIHPSLLVHKKLIFLNLKGCTSLRALPAKIFMKSLETLVLSGCLKLKKFPDIV 86 (612)
Q Consensus 16 ~~l~~L~~L~L~~c~~---------l~~i~~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~ 86 (612)
..+++|+.|.+.+... ...+...+..+++|+.|+|++|..+ .++. +.+++|+.|+|..|.........+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHH
Confidence 4578999999865321 1134455678899999999987544 4454 448999999999887443322333
Q ss_pred --cCCCCCCeeecCC--cC------Cccccccc--ccCCCCcEEeccCCCCCccccccc---ccCCCCCEEecCCCCCCc
Q 007219 87 --GSMECLQELHLDG--TD------IKELPLSI--ELLSGLVRLTLYGCKNFERIPSTI---SALKYLSTLNLSGLWKLR 151 (612)
Q Consensus 87 --~~l~~L~~L~L~~--~~------i~~lp~~i--~~l~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~L~~~~~l~ 151 (612)
..+++|++|+|+. +. +..+...+ ..+++|++|++.+|......+..+ ..+++|++|+|+.|....
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3789999999853 11 22333333 357899999999987654333223 247899999999885443
Q ss_pred c----chhhhhccccccEEEccCcCCCC
Q 007219 152 E----FPEIVESMEQLLELHLEGTAIRG 175 (612)
Q Consensus 152 ~----~p~~l~~l~~L~~L~L~~~~i~~ 175 (612)
. ++..+..+++|+.|+++.|.+.+
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 2 45556778999999999998774
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.36 E-value=0.00013 Score=75.54 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=66.9
Q ss_pred cCCCCCCCCCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCccccC
Q 007219 11 RTPDFSRVPNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPDIVGS 88 (612)
Q Consensus 11 ~~p~l~~l~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~~~~~ 88 (612)
..|-+....+|+++.+. .++..|.. ++.++.+|+.++|.. .++.++...+ -.+|+.+.+..+ ++.+++....
T Consensus 38 ~~~~~~~~~~i~~v~ip--~~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c~l~~i~~~~~--l~~I~~~aF~ 111 (379)
T 4h09_A 38 NIPWYKDRDRISEVRVN--SGITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADTKLQSYTGMER--VKKFGDYVFQ 111 (379)
T ss_dssp GSTTGGGGGGCSEEEEC--TTEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCCCCEEEECTT--CCEECTTTTT
T ss_pred cccccccccCCEEEEeC--CCccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCCCCceEECCce--eeEeccceec
Confidence 34555566678888775 45666655 567788888888864 3666666554 235666665532 4444443323
Q ss_pred CCCCCeeecCCcCCcccccccccCCCCcEEeccCCCCCccc-ccccccCCCCCEEecCC
Q 007219 89 MECLQELHLDGTDIKELPLSIELLSGLVRLTLYGCKNFERI-PSTISALKYLSTLNLSG 146 (612)
Q Consensus 89 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~ 146 (612)
..+|+.+.+..+ +..+......-.+|+.+.+... +..+ ...+.....++...+..
T Consensus 112 ~~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 112 GTDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred cCCcccccCCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 346777777643 3333332222234444444332 1111 12244455555555543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.23 E-value=4.9e-05 Score=79.47 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=74.1
Q ss_pred hhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCCCCCcccc-cccCCCCCCcEEeccCCCCCcccCcccccccc
Q 007219 179 SIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGCSKLKNVP-ENLGKVESLEVLDISGCKGLLQSTSWFLHFPI 257 (612)
Q Consensus 179 ~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 257 (612)
.+..+..|+.+.+.+... ..-...+.++++|+.+.+.. .+..++ ..+..+.+|+.+.+...-...
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I----------- 325 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQI----------- 325 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEE-----------
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEe-----------
Confidence 345667788887754321 12224566788999999863 344454 356778999999886431100
Q ss_pred eecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCC-ccccCcCCCCEEeccCCCccccchhhhcccccccccc
Q 007219 258 TLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIP-SDIGHLCSLKELYLSRNSFVSLPASIIHLSKLGKMVL 333 (612)
Q Consensus 258 ~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip-~~l~~l~sL~~L~Ls~n~l~~lp~~i~~L~~L~~L~l 333 (612)
.--.+.++.+|+.+.|..+ +. .+. ..+.++++|+.+++.++.... ..+..+..|+.+.+
T Consensus 326 ------------~~~aF~~C~~L~~i~ip~s-v~--~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 326 ------------LDDAFAGCEQLERIAIPSS-VT--KIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPV 385 (394)
T ss_dssp ------------CTTTTTTCTTCCEEEECTT-CC--BCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC-----
T ss_pred ------------hHhHhhCCCCCCEEEECcc-cC--EEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEe
Confidence 0113778899999999654 32 243 567889999999998874321 23334444444443
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.21 E-value=0.0002 Score=74.74 Aligned_cols=302 Identities=9% Similarity=0.138 Sum_probs=152.3
Q ss_pred CCCCC-CccEEeccCCCCcccccc-ccccCCCccEEecCCC--CCCccCCCccC--CCCccEEEccCCcCCcccC-cccc
Q 007219 15 FSRVP-NLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGC--TSLRALPAKIF--MKSLETLVLSGCLKLKKFP-DIVG 87 (612)
Q Consensus 15 l~~l~-~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c--~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~p-~~~~ 87 (612)
|..+. .|+++.|-. .+..|.. ++.++.+|+.+.+..+ ..++.++...+ +.+|+.+.+... +..++ ..+.
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~ 134 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH 134 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence 55553 466666642 3444433 4566777777766542 23555554443 566666555432 33333 3455
Q ss_pred CCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhccccccEE
Q 007219 88 SMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQLLEL 166 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~L~~L 166 (612)
++.+|+.+.+..+ +..++ ..+..+.+|+.+.+... +..+.........|+.+.+... ........+..+.++...
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhcccccee
Confidence 6667777766532 33333 23555666666666542 2333332222345666655432 111122344555555555
Q ss_pred EccCcCCCCCChhhhc--------------cCCCcEEeecCCCCCCcc-cccccCCCCCCEEEecCCCCCcccccccCCC
Q 007219 167 HLEGTAIRGLPASIEF--------------LSGLVLLNLKDCKNLKSL-PRTINGLRSLKTLHLSGCSKLKNVPENLGKV 231 (612)
Q Consensus 167 ~L~~~~i~~lp~~i~~--------------l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l 231 (612)
.........+...+.. ...+..+.+.+ ....+ ...+.++++|+.+.+.... ...-...+.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c 287 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNC 287 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTC
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEeccccc-ceecCcccccc
Confidence 5444333222211110 01111111111 01111 1234566777777765421 11222345566
Q ss_pred CCCcEEeccCCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCC-CccccCcCCCCEEec
Q 007219 232 ESLEVLDISGCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAI-PSDIGHLCSLKELYL 310 (612)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~i-p~~l~~l~sL~~L~L 310 (612)
++|+.+.+...-.. ..--.+.++.+|+.++|..+ +. .+ ...+..+++|+.+.|
T Consensus 288 ~~L~~i~l~~~i~~-----------------------I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 288 PALQDIEFSSRITE-----------------------LPESVFAGCISLKSIDIPEG-IT--QILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTCCEEECCTTCCE-----------------------ECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEE
T ss_pred cccccccCCCcccc-----------------------cCceeecCCCCcCEEEeCCc-cc--EehHhHhhCCCCCCEEEE
Confidence 77777776432100 01112778899999999754 32 13 346778999999999
Q ss_pred cCCCccccc-hhhhccccccccccccccccccCCCCCCCccEEeccCCCCcceecC
Q 007219 311 SRNSFVSLP-ASIIHLSKLGKMVLEDCKRLQSLPQPPPSIVSIRVDGCTSLETISC 365 (612)
Q Consensus 311 s~n~l~~lp-~~i~~L~~L~~L~l~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~~ 365 (612)
..+ ++.+. ..+.++++|+.+++.+....-. .+.+|.+|+.+..
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----------~~~~~~~L~~i~i 385 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----------AISTDSGLQNLPV 385 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----------TCBCCCCC-----
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceeehh-----------hhhccCCCCEEEe
Confidence 654 77776 4678899999998876532110 2356777777653
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.00051 Score=71.09 Aligned_cols=274 Identities=10% Similarity=0.136 Sum_probs=137.2
Q ss_pred CccCC--CCCCCCCccEEeccCCCCcccccc-ccccCCCccEEecCCCCCCccCCCccC-CCCccEEEccCCcCCcccCc
Q 007219 9 LIRTP--DFSRVPNLEQLILEGCTRLHEIHP-SLLVHKKLIFLNLKGCTSLRALPAKIF-MKSLETLVLSGCLKLKKFPD 84 (612)
Q Consensus 9 L~~~p--~l~~l~~L~~L~L~~c~~l~~i~~-si~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~p~ 84 (612)
++.|+ +|.++.+|+++.|.. .+..|.. .+.++ +|+.+.+.. .++.++...+ ..+|+.+.+... +..+..
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~lp~~--~~~i~~ 129 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFEFPGA--TTEIGN 129 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEECCTT--CCEECT
T ss_pred ccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccccCCCc--cccccc
Confidence 44455 488999999999963 4667765 44555 688777764 4667776655 568999998763 333333
Q ss_pred -cccCCCCCCeeecCCcCCcccc-cccccCCCCcEEeccCCCCCcccccccccCCCCCEEecCCCCCCccchhhhhcccc
Q 007219 85 -IVGSMECLQELHLDGTDIKELP-LSIELLSGLVRLTLYGCKNFERIPSTISALKYLSTLNLSGLWKLREFPEIVESMEQ 162 (612)
Q Consensus 85 -~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~l~~l~~ 162 (612)
.+.+ .+|+.+.+..+ ++.+. ..+....+++.+.+............+. .. ........+.....
T Consensus 130 ~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 130 YIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YN-----------KNKTILESYPAAKT 195 (379)
T ss_dssp TTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EE-----------TTSSEEEECCTTCC
T ss_pred ccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeeccccee-cc-----------cccceecccccccc
Confidence 2333 35666555432 33332 3355667777776655332111110000 00 00000011111222
Q ss_pred ccEEEccCcCCCCCChhhhccCCCcEEeecCCCCCCcc-cccccCCCCCCEEEecCCCCCcccc-cccCCCCCCcEEecc
Q 007219 163 LLELHLEGTAIRGLPASIEFLSGLVLLNLKDCKNLKSL-PRTINGLRSLKTLHLSGCSKLKNVP-ENLGKVESLEVLDIS 240 (612)
Q Consensus 163 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~ 240 (612)
+..+.+...........+....+|+.+.+... +..+ ...+..+..|+.+.+..+ +..+. ..+..+.+|+.+.+.
T Consensus 196 ~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 196 GTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp CSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccc
Confidence 22222222111111222333444554444322 1222 123445666666666543 23332 334556677777664
Q ss_pred CCCCCcccCcccccccceecccCCCCccccCCCCCCCCcccEEeccCCCCCCCCCC-ccccCcCCCCEEeccCCCccccc
Q 007219 241 GCKGLLQSTSWFLHFPITLIRRNSDPVAWRFPSLSGLYCLRKLDISDCNLGEGAIP-SDIGHLCSLKELYLSRNSFVSLP 319 (612)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ip-~~l~~l~sL~~L~Ls~n~l~~lp 319 (612)
..-... .-..+.++.+|+.+.+.++.+.. ++ ..+..+.+|+.+.|..+ ++.+.
T Consensus 272 ~~i~~i-----------------------~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 272 AKVKTV-----------------------PYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp CCCSEE-----------------------CTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred ccceec-----------------------cccccccccccccccccccccce--ehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 321100 01126677888888887766532 33 45677888998888643 55554
Q ss_pred h-hhhcccccccccc
Q 007219 320 A-SIIHLSKLGKMVL 333 (612)
Q Consensus 320 ~-~i~~L~~L~~L~l 333 (612)
. .+.++++|+.+.+
T Consensus 326 ~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 326 VYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTTCTTCCCCCC
T ss_pred HHHhhCCCCCCEEEE
Confidence 3 3444444544433
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.82 E-value=1.6e-05 Score=73.71 Aligned_cols=13 Identities=8% Similarity=-0.153 Sum_probs=6.2
Q ss_pred CCCCCCEEEecCC
Q 007219 206 GLRSLKTLHLSGC 218 (612)
Q Consensus 206 ~l~~L~~L~Ls~c 218 (612)
..++|++|++++|
T Consensus 149 ~n~~L~~L~L~~n 161 (185)
T 1io0_A 149 KNTTLLKFGYHFT 161 (185)
T ss_dssp HCSSCCEEECCCS
T ss_pred hCCCcCEEeccCC
Confidence 3344555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=2.1e-05 Score=73.01 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=7.1
Q ss_pred CCCCCCeeecCCcCCc
Q 007219 88 SMECLQELHLDGTDIK 103 (612)
Q Consensus 88 ~l~~L~~L~L~~~~i~ 103 (612)
..++|++|+|++|.|.
T Consensus 63 ~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TCCSCCEEECTTSCCC
T ss_pred hCCCcCEEECcCCCCC
Confidence 3344444444444443
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=1.9e-05 Score=72.03 Aligned_cols=15 Identities=0% Similarity=0.073 Sum_probs=7.0
Q ss_pred CCccEEeccCCCCcc
Q 007219 347 PSIVSIRVDGCTSLE 361 (612)
Q Consensus 347 ~sL~~L~i~~C~~L~ 361 (612)
++|+.|++.+|+.++
T Consensus 139 ~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCCEEEEESCTTCC
T ss_pred CCCCEEECCCCCCCC
Confidence 344444444444443
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.56 E-value=2.1e-05 Score=71.79 Aligned_cols=35 Identities=6% Similarity=0.251 Sum_probs=15.5
Q ss_pred CCCEEEecCCCCCcccccccCCCCCCcEEeccCCC
Q 007219 209 SLKTLHLSGCSKLKNVPENLGKVESLEVLDISGCK 243 (612)
Q Consensus 209 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 243 (612)
.|+.|++++|.....--..+..+++|+.|++++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 45555555554333222333444444444444444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=0.00015 Score=71.10 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=54.0
Q ss_pred cCCCCCCeeecCCcCCcccc---cccccCCCCcEEeccCCCCCcccccccccCC--CCCEEecCCCCCCccch-------
Q 007219 87 GSMECLQELHLDGTDIKELP---LSIELLSGLVRLTLYGCKNFERIPSTISALK--YLSTLNLSGLWKLREFP------- 154 (612)
Q Consensus 87 ~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~L~~~~~l~~~p------- 154 (612)
.++++|+.|+|++|.|..++ ..+..+++|+.|+|++|.... + ..+..++ +|++|++++|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46777888888888777543 456677888888888776433 2 2233333 78888888887665444
Q ss_pred hhhhccccccEEE
Q 007219 155 EIVESMEQLLELH 167 (612)
Q Consensus 155 ~~l~~l~~L~~L~ 167 (612)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3577888888886
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.32 E-value=0.00028 Score=69.11 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=57.8
Q ss_pred hccccccEEEccCcCCCCC---ChhhhccCCCcEEeecCCCCCCcccccccCCC--CCCEEEecCCCCCccccc------
Q 007219 158 ESMEQLLELHLEGTAIRGL---PASIEFLSGLVLLNLKDCKNLKSLPRTINGLR--SLKTLHLSGCSKLKNVPE------ 226 (612)
Q Consensus 158 ~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~--~L~~L~Ls~c~~l~~lp~------ 226 (612)
.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|..... ..+..++ +|++|++++|...+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4677888888888887764 35667788888888888775543 2233333 899999999888776652
Q ss_pred -ccCCCCCCcEEecc
Q 007219 227 -NLGKVESLEVLDIS 240 (612)
Q Consensus 227 -~l~~l~~L~~L~l~ 240 (612)
.+..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 36678899888743
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.20 E-value=0.028 Score=51.93 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=16.5
Q ss_pred cCCCCCCeeecCCcCCc-----ccccccccCCCCcEEeccCCC
Q 007219 87 GSMECLQELHLDGTDIK-----ELPLSIELLSGLVRLTLYGCK 124 (612)
Q Consensus 87 ~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~ 124 (612)
..-..|+.|+|++|.|. .+...+..-+.|+.|+|++|.
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 33344555555554444 222333334444444444443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.32 E-value=0.057 Score=49.90 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=46.2
Q ss_pred cccCCCCCEEecCCCCCCc----cchhhhhccccccEEEccCcCCCC-----CChhhhccCCCcEEeecCCCC--CC---
Q 007219 133 ISALKYLSTLNLSGLWKLR----EFPEIVESMEQLLELHLEGTAIRG-----LPASIEFLSGLVLLNLKDCKN--LK--- 198 (612)
Q Consensus 133 l~~l~~L~~L~L~~~~~l~----~~p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~--l~--- 198 (612)
+..-+.|+.|+|++|.... .+.+.+..-+.|++|+|+.|.|.. +-..+..-+.|+.|+|.+|.. ++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3334455555555554332 234445555666666666666653 334445555677777765432 11
Q ss_pred --cccccccCCCCCCEEEecCC
Q 007219 199 --SLPRTINGLRSLKTLHLSGC 218 (612)
Q Consensus 199 --~lp~~i~~l~~L~~L~Ls~c 218 (612)
.+...+..-+.|++|+++.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCC
Confidence 13333444567777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.34 E-value=0.27 Score=42.06 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=19.5
Q ss_pred cCCCccCCCCccEEEccCCcCCcccC-ccccCCCCCCeeecCCcCC
Q 007219 58 ALPAKIFMKSLETLVLSGCLKLKKFP-DIVGSMECLQELHLDGTDI 102 (612)
Q Consensus 58 ~lp~~~~l~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~~~i 102 (612)
.+|..+ .++|++|+|++|. +..+| ..+..+++|++|+|.+|.+
T Consensus 24 ~vP~~l-p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF-PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC-CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC-CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 455432 3345555555544 22222 3344455555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.71 E-value=0.39 Score=41.01 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=21.4
Q ss_pred EEEccCcCCC--CCChhhhccCCCcEEeecCCCCCCcccccccCCCCCCEEEecCC
Q 007219 165 ELHLEGTAIR--GLPASIEFLSGLVLLNLKDCKNLKSLPRTINGLRSLKTLHLSGC 218 (612)
Q Consensus 165 ~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 218 (612)
.++.+++.++ .+|..+ .++|+.|+|++|.....-+..+..+++|+.|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444455554 454322 223444444444322222222334444444444444
Done!