BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007221
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
Length = 317
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 60 LDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHID 119
LD + S EE++++V R +D +R+L S QA + LAE HID
Sbjct: 85 LDYAQGSPEELKETVRLVEEQGRRIIARQAD-------VRDLASLQAVVDEALAEFGHID 137
Query: 120 SLKGSESFASKNDLLNLENKEPSDL 144
L + +++ ++++L +++ SD+
Sbjct: 138 ILVSNVGISNQGEVVSLTDQQWSDI 162
>pdb|2D2S|A Chain A, Crystal Structure Of The Exo84p C-Terminal Domains
Length = 235
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Query: 155 LDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID-RRQKLADQLAEA 213
+D+ LA R + A+ L + E + + + + ML++L + I+ RR+ ++ +L+++
Sbjct: 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQS 84
Query: 214 ACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAA 273
S L++ + KLG +A L L Q + L+ S Y
Sbjct: 85 IL-SSNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLI--LQIGSVDNPTNYLTQ 141
Query: 274 LSQLVFSAIAQAACDSLAIFGKETA-YTSELVMWATRQTEAFAHLVKRH 321
L+ + F I + D IF + A +S LV W + + + L+ +
Sbjct: 142 LAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLIDKQ 190
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 264 TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE-TAYTSELVM 305
+S G YT L L+F+++A++ C+ L + E T Y ++++
Sbjct: 1015 SSMGNGYTFELESLIFASLARSVCEILDLDSSEVTVYGDDIIL 1057
>pdb|3MMP|G Chain G, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|F Chain F, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 589
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 264 TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE-TAYTSELVM 305
+S G YT L L+F+++A++ C+ L + E T Y ++++
Sbjct: 321 SSMGNGYTFELESLIFASLARSVCEILDLDSSEVTVYGDDIIL 363
>pdb|3P52|A Chain A, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
pdb|3P52|B Chain B, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
Length = 249
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 76 ANYAAFIRTS--KEISDLEGEL----SSIRNLLSTQATLIHGLAEGVH-IDSLKGSESFA 128
N+AA IR S + S L+ L S+ LL T+ LA + I SL SE +A
Sbjct: 108 GNFAARIRXSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKSEIYA 167
Query: 129 SKNDLLNLEN---KEPS-DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQT 184
L EN K PS DL W + D D+ + +IDE L AL+ + K
Sbjct: 168 LAKYLNLHENFIKKAPSADL--WENQ-SDEADLGFSYTKIDEGLKALETNDE-----KLL 219
Query: 185 KTLDPAMLISLENTIIDRRQK 205
+TLDP+++ L+N R QK
Sbjct: 220 RTLDPSLIAXLKN----RXQK 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,488,812
Number of Sequences: 62578
Number of extensions: 578143
Number of successful extensions: 1430
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1428
Number of HSP's gapped (non-prelim): 10
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)