Query 007221
Match_columns 612
No_of_seqs 170 out of 242
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 20:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2215 Exocyst complex subuni 100.0 2.9E-46 6.3E-51 414.1 23.3 571 25-604 4-592 (673)
2 KOG2346 Uncharacterized conser 100.0 1.4E-29 2.9E-34 266.9 19.2 305 29-387 27-342 (636)
3 PF04124 Dor1: Dor1-like famil 99.8 1.2E-18 2.6E-23 185.6 28.9 315 46-379 6-336 (338)
4 PF08700 Vps51: Vps51/Vps67; 99.7 1.3E-16 2.8E-21 136.9 12.2 85 30-114 1-86 (87)
5 KOG2069 Golgi transport comple 99.6 9.7E-14 2.1E-18 151.2 29.4 340 31-395 17-376 (581)
6 KOG2215 Exocyst complex subuni 99.6 9.2E-15 2E-19 163.8 20.3 326 143-511 282-633 (673)
7 PF15469 Sec5: Exocyst complex 99.2 2.3E-10 5.1E-15 111.6 14.3 170 68-247 2-181 (182)
8 PF06248 Zw10: Centromere/kine 98.9 0.00056 1.2E-08 78.8 50.3 440 48-510 8-532 (593)
9 PF04100 Vps53_N: Vps53-like, 98.6 0.00023 5E-09 77.5 35.3 338 33-392 2-383 (383)
10 PF10191 COG7: Golgi complex c 98.6 0.00019 4.2E-09 84.7 35.1 412 26-463 1-442 (766)
11 PF10475 DUF2450: Protein of u 98.6 4.8E-06 1E-10 87.3 19.6 218 30-259 8-235 (291)
12 KOG2033 Low density lipoprotei 98.2 0.0022 4.7E-08 72.3 29.3 275 34-325 7-311 (863)
13 KOG2347 Sec5 subunit of exocys 98.0 0.018 4E-07 66.8 33.7 349 30-396 166-607 (934)
14 KOG2180 Late Golgi protein sor 97.8 0.1 2.2E-06 59.7 34.8 409 24-463 8-464 (793)
15 PF06148 COG2: COG (conserved 97.5 6.4E-05 1.4E-09 69.8 2.6 87 28-116 6-92 (133)
16 PF10392 COG5: Golgi transport 97.2 0.0041 8.9E-08 57.7 11.2 89 29-117 2-96 (132)
17 KOG2307 Low density lipoprotei 96.3 1.7 3.8E-05 48.8 24.5 104 5-112 4-108 (705)
18 KOG4182 Uncharacterized conser 94.9 8 0.00017 42.9 30.7 216 27-254 3-237 (828)
19 PF04048 Sec8_exocyst: Sec8 ex 92.8 1 2.2E-05 42.3 10.3 81 29-109 15-102 (142)
20 KOG3691 Exocyst complex subuni 92.5 2.9 6.4E-05 49.3 15.1 140 63-216 59-206 (982)
21 PF03081 Exo70: Exo70 exocyst 86.4 22 0.00048 38.3 15.6 86 409-503 139-236 (371)
22 PF07393 Sec10: Exocyst comple 85.4 88 0.0019 37.1 23.2 182 164-352 74-274 (710)
23 KOG2176 Exocyst complex, subun 71.9 2.2E+02 0.0049 34.0 38.2 134 40-180 36-172 (800)
24 PF06046 Sec6: Exocyst complex 69.3 62 0.0014 37.1 13.1 253 239-511 77-339 (566)
25 KOG2344 Exocyst component prot 68.7 2.4E+02 0.0053 33.1 19.5 44 220-263 191-234 (623)
26 PF01031 Dynamin_M: Dynamin ce 59.7 95 0.002 32.5 11.3 81 313-395 194-275 (295)
27 PF04420 CHD5: CHD5-like prote 58.4 19 0.00042 34.5 5.3 64 49-115 39-102 (161)
28 PF15290 Syntaphilin: Golgi-lo 55.7 55 0.0012 34.2 8.2 48 35-83 54-107 (305)
29 COG2959 HemX Uncharacterized e 53.3 3.4E+02 0.0074 29.7 16.3 116 51-201 64-184 (391)
30 smart00762 Cog4 COG4 transport 53.0 1E+02 0.0022 33.0 10.3 88 204-292 6-101 (324)
31 PF04129 Vps52: Vps52 / Sac2 f 49.8 4.4E+02 0.0096 30.0 25.6 75 37-117 6-80 (508)
32 PF08318 COG4: COG4 transport 47.6 2.4E+02 0.0052 30.2 12.1 111 204-317 6-128 (331)
33 COG2882 FliJ Flagellar biosynt 46.9 1.4E+02 0.003 28.5 8.9 10 75-84 66-75 (148)
34 KOG4572 Predicted DNA-binding 45.2 6.4E+02 0.014 30.6 17.6 197 72-324 349-545 (1424)
35 cd02680 MIT_calpain7_2 MIT: do 40.9 1.2E+02 0.0026 25.5 6.7 51 161-217 19-73 (75)
36 PF06419 COG6: Conserved oligo 40.3 6.7E+02 0.015 29.4 42.4 76 221-296 190-279 (618)
37 PF04305 DUF455: Protein of un 36.6 2.8E+02 0.006 28.8 10.0 125 268-395 68-207 (253)
38 PRK15321 putative type III sec 35.9 1E+02 0.0023 27.1 5.7 56 420-497 18-73 (120)
39 PF04444 Dioxygenase_N: Catech 35.0 68 0.0015 26.9 4.3 50 198-247 3-56 (74)
40 cd02681 MIT_calpain7_1 MIT: do 33.5 1.9E+02 0.004 24.3 6.7 40 161-202 19-60 (76)
41 PF04437 RINT1_TIP1: RINT-1 / 33.1 7.6E+02 0.016 27.9 21.3 213 276-505 31-263 (494)
42 cd02678 MIT_VPS4 MIT: domain c 31.3 2.6E+02 0.0057 22.9 7.4 52 161-214 19-70 (75)
43 PF05664 DUF810: Protein of un 30.7 9.9E+02 0.021 28.5 30.5 95 357-463 510-607 (677)
44 PF09577 Spore_YpjB: Sporulati 30.6 4.7E+02 0.01 26.8 10.3 63 146-208 3-66 (232)
45 smart00745 MIT Microtubule Int 30.0 3E+02 0.0065 22.4 7.5 44 161-205 21-64 (77)
46 PF08631 SPO22: Meiosis protei 29.8 5.9E+02 0.013 26.2 11.4 245 158-451 3-249 (278)
47 PF13176 TPR_7: Tetratricopept 29.8 62 0.0013 22.4 2.9 20 156-175 7-26 (36)
48 PRK04863 mukB cell division pr 28.9 8.3E+02 0.018 32.0 14.3 228 24-258 739-1071(1486)
49 PF04212 MIT: MIT (microtubule 28.5 2E+02 0.0044 23.0 6.1 40 161-201 18-57 (69)
50 cd02683 MIT_1 MIT: domain cont 26.8 3.7E+02 0.008 22.4 7.5 40 161-202 19-59 (77)
51 cd02684 MIT_2 MIT: domain cont 25.8 3.8E+02 0.0082 22.3 7.3 52 161-214 19-70 (75)
52 PF13779 DUF4175: Domain of un 24.7 1.2E+03 0.025 28.6 13.9 40 145-184 537-576 (820)
53 PF09730 BicD: Microtubule-ass 22.4 1.4E+03 0.03 27.5 14.0 76 31-107 244-321 (717)
54 cd02656 MIT MIT: domain contai 22.1 4.3E+02 0.0094 21.4 7.6 44 161-205 19-62 (75)
55 cd02677 MIT_SNX15 MIT: domain 21.3 4.8E+02 0.01 21.7 7.3 52 161-214 19-71 (75)
56 PRK11020 hypothetical protein; 21.2 3.1E+02 0.0067 24.9 6.1 50 50-102 5-54 (118)
57 PF11568 Med29: Mediator compl 21.1 6.9E+02 0.015 23.8 8.9 50 33-89 2-69 (148)
58 PF10516 SHNi-TPR: SHNi-TPR; 20.6 1.7E+02 0.0037 21.2 3.7 26 156-181 9-34 (38)
59 PF05082 Rop-like: Rop-like; 20.4 2.3E+02 0.0051 23.3 4.8 32 86-117 2-33 (66)
60 PF10691 DUF2497: Protein of u 20.4 1.8E+02 0.0038 24.4 4.2 35 350-384 29-63 (73)
61 PF06046 Sec6: Exocyst complex 20.3 1.3E+03 0.028 26.3 12.9 51 409-460 392-443 (566)
No 1
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-46 Score=414.10 Aligned_cols=571 Identities=31% Similarity=0.387 Sum_probs=482.1
Q ss_pred hhhcccCCCCCChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHH
Q 007221 25 EGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLST 104 (612)
Q Consensus 25 ~~~~~f~~~~Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~ 104 (612)
++...|..+.|+|+.|+++.....+++++++|+++..+++++++.|+++||.||.+||++||||++||.||++++|++.+
T Consensus 4 ~~~s~f~~~~~t~~~~i~~~~~~~e~dl~~~~~~~~~l~~as~e~~r~~~~~ny~~fI~~skEi~~le~el~~l~~~l~~ 83 (673)
T KOG2215|consen 4 DDDSSFEDEKITPSSYIPSKSKKKESDLQQLCSELVALNKASAETLRQKVSMNYKAFIRTSKEISDLEMELYQLPKFLIE 83 (673)
T ss_pred CccccCcccccCccccccchhhhhhhhHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhcCcccccccchHHHhHHhhhh
Confidence 45557999999999999999866679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccccccCCCCcccccccccCCCCC-chhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcc
Q 007221 105 QATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPS-DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQ 183 (612)
Q Consensus 105 q~~~I~~Ls~~v~~~sl~~~~d~~~~~~~~~~~~~~~~-~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~ 183 (612)
|.+.++++..|++.+-....+..+..+.....++.+.. ...+|+.++++.++.+.+.+ .+.|...++..+. +...+.
T Consensus 84 Q~~~~~~l~~~~~~d~~~~~s~~s~sn~~~~~~~~~l~~~~~~~~~~fl~~l~~~~~~~-~dg~l~~~D~~~~-~~~q~~ 161 (673)
T KOG2215|consen 84 QNNVIQSLLNGVLQDLSEDESLESLSNTLLSLEDIHLGDVVKNLVKGFLKNLNTLLFES-VDGALEAFDFEKF-LPSQKT 161 (673)
T ss_pred ccchHHHhhccccccccccccccccCCccccccCCchhHHHHHHHHHHHHhhhhhhhcc-chHHHhhcchhhh-ccchHH
Confidence 99999999999872211111111100110112222222 55799999999999999999 8888887765432 111111
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccccccc
Q 007221 184 TK-TLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPS 262 (612)
Q Consensus 184 ~~-~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~l~~l~~~ 262 (612)
.. ..++ .....+..++.|...|++.+.....++++...++..++-.|++||.++.++.+.++.+..++...+...++.
T Consensus 162 ~~~~~~~-~L~~~~~~~~~r~~~l~d~~~~~a~~~~~~~~e~~~a~~~li~l~~~~~~~~i~~~~~~~~~~~~~ea~R~~ 240 (673)
T KOG2215|consen 162 LKTDFSH-DLNSVKITHDKRKESLTDLSLRLAAQINIKDEESWEAQLNLIRLGYSRMYHNILAQRPTLWVNMLIQAKRLS 240 (673)
T ss_pred HHHHHHh-hhhhhhhhhchhhhHHHHHHHHHhhccccchHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 10 1111 256678889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccchHHhhHHHHHHHHHHHHHHHHHhcCCC--CcchhhHHHHHHHHHHHHHHHHhHHhcCcccccCchHHHHHHHH
Q 007221 263 STSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE--TAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQ 340 (612)
Q Consensus 263 gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~--~~~~S~LV~Wa~~eie~f~~l~krqv~~~~~a~~~l~~~~ecv~ 340 (612)
...++..|-+.++.+.|+.+..+..+-...|++. +++....+.|...+++.|-.+|+.+.+.++..+..++..+.|.+
T Consensus 241 l~~~~~~~qa~~~~~~~~~~S~A~~e~~~~~~~e~~~s~~~~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~~~ 320 (673)
T KOG2215|consen 241 LQTSPMERQATFPKLRFSAISWALTESLISFGEENLPSYSDEEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASACLQ 320 (673)
T ss_pred HhhCccccccccchHHHhcCCcccCcccccccCCCCcccchhhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccchh
Confidence 8877789999999999999999999999999988 88999999999999999999999999888777788898899999
Q ss_pred HHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCccc-cccccccccchhHHH
Q 007221 341 IALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQA-SSMALQHRLTTSAHR 419 (612)
Q Consensus 341 ~~~~~c~~L~~vGLdl~~lL~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~-~~~~~~~~LT~S~~~ 419 (612)
.+..+|..|+.+||-+..+|..++. ++++++.++.+.......++.-++|....++-..+.+ ...+..+..|+++++
T Consensus 321 ~~~~~~~~Lq~~~lfl~~~ll~~~~--~~~~le~~~r~~~~~~~~l~el~~~~~at~~~l~~~s~~~~a~~~~~~~~~~r 398 (673)
T KOG2215|consen 321 LALTICKPLQMRELFLLNLLLKIFS--VERALERDFRVAQRRHHQLVELGRWSRSTKRLLFKHSESLSAYRCRDTDEASR 398 (673)
T ss_pred hhhhhhhhhhHhHhhhhhHHHHHhh--hhhhhhhhHHHHhhhHHHHHHhhhhcccchHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999999 8999999999999999999999999976554444433 233467899999999
Q ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHhhCCCChhhhhcccCCCcccccccccHHHHHHHHhhHHHH
Q 007221 420 FNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLL 499 (612)
Q Consensus 420 F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~~~~a~t~~qq~~ll~Na~~l 499 (612)
|.-++++|.++++++.+.+.++..+..+.+.++.|++.+.+++|++.++.+-.+..+..+++.+++..+|++.|+++.++
T Consensus 399 ~~~~~~d~~~~l~~~~~~e~~s~~~~~~~q~~~~~ldtl~~~l~~s~~e~~~~~s~~a~iv~~a~~~~~qL~~ig~~lt~ 478 (673)
T KOG2215|consen 399 FLQVVQDFSEDLCDILKFEQGSKCLYTSFQVLNKELDTLGRQLPRSYEEQGPARSMVAEIVKRAEHTSEQLTLIGLDLTI 478 (673)
T ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHcccchhhcCchHHHHHHHHHHhhhhHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999988887766777889999999999999999999999
Q ss_pred HHhhHHHHhhhhcCCccCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCccccHHHhh
Q 007221 500 ADELLPRAAMKVSPLNQANYKDDPRRRHSDRQNRNPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYL 579 (612)
Q Consensus 500 ~d~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~c~~~~~~~~~~~~~~~~l~~~~~~ 579 (612)
.++.||+....-. +......+...++++++++ |.++|++++-.+.++|++-||+++++.++|.+.|.+++++++|+
T Consensus 479 ~~~~Llr~~le~s--~~l~~~~E~~~~ald~r~~--~ee~W~~~~L~t~s~Lk~l~ee~~~~gv~~~~~~~~~~e~d~~~ 554 (673)
T KOG2215|consen 479 RDEALLRSKLESS--QLLEGFKEGIADALDNRNR--EEESWVRYLLQTESALKDLSEELSDLGVIYLRQISHELEGDGWL 554 (673)
T ss_pred HHHhhhhhhHHHh--hhhhcchhhHHHHHHhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHhhhhcccccceEE
Confidence 9999999887663 2222223434577888887 89999999999999999999999999999999999999999996
Q ss_pred hcc-------------CCCCCCccccchhHHHHHHHHH
Q 007221 580 NMD-------------GNVDELEWFPSLIFQKTKVFGM 604 (612)
Q Consensus 580 ~~~-------------~~~~~~~~~ps~~fq~~~~~~~ 604 (612)
++- -..+.+...|.++||.+-++--
T Consensus 555 nl~~q~v~~~~~~~~~le~d~~l~k~~l~~~lLe~L~e 592 (673)
T KOG2215|consen 555 NLSSQLVVSKKQLMHLLEKDLPLGKLELAFQLLELLAE 592 (673)
T ss_pred ehhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHH
Confidence 622 1223344467777776665543
No 2
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=266.89 Aligned_cols=305 Identities=17% Similarity=0.152 Sum_probs=242.6
Q ss_pred ccCCCCCChHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhH-------HHHHHHHHH
Q 007221 29 LFKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDL-------EGELSSIRN 100 (612)
Q Consensus 29 ~f~~~~Fd~e~Yv~~~l-~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~L-------E~EM~~L~~ 100 (612)
-+++++||||.|+.++. +++..+|.+-+.+|+...+++++|||+.||+|||+||.||++|++| |+||..|
T Consensus 27 DlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L-- 104 (636)
T KOG2346|consen 27 DLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGL-- 104 (636)
T ss_pred ccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhH--
Confidence 48999999999999999 9999999999999999999999999999999999999999999986 7888888
Q ss_pred HHHHHHHHHHHhhhhhhcccccccCCCCcccccccccC-CCCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHH
Q 007221 101 LLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLEN-KEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAA 179 (612)
Q Consensus 101 lLs~q~~~I~~Ls~~v~~~sl~~~~d~~~~~~~~~~~~-~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~ 179 (612)
++.++.|+++++++. .++..+++.+.+ ... ....+.++++.|+|..|..|+..+.|-+||...-.|+..+.
T Consensus 105 --~~~ms~i~~~s~~l~-g~L~ekre~I~k-----Lg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~ 176 (636)
T KOG2346|consen 105 --EEVMSSIQSKSDGLA-GSLFEKRELIKK-----LGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLR 176 (636)
T ss_pred --HHHHHHHhhhhcccc-chhHHhHHHHHH-----hcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchh
Confidence 888999999999998 677776655321 222 22456799999999999999999999999999999999999
Q ss_pred hhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHhccc
Q 007221 180 EAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA-HSLLLNAHYQRYQYSMQS 258 (612)
Q Consensus 180 ~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A-~~lfL~~rs~~L~~~l~~ 258 (612)
+|++.| .++....+.++++.+++.+|...+.+++...+...+|+.+|..||++... +..+|.+-...|
T Consensus 177 qY~~~p-----sfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~del~~~lL~~~eqsL------ 245 (636)
T KOG2346|consen 177 QYDGRP-----SFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPVDELKAKLLEKLEQSL------ 245 (636)
T ss_pred hcCCCC-----cHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhccc------
Confidence 999877 68999999999999999999999999988888999999999999999887 666666655443
Q ss_pred ccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHhHHhcCcccccCchHHHHHH
Q 007221 259 LRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAEC 338 (612)
Q Consensus 259 l~~~gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~~~~~S~LV~Wa~~eie~f~~l~krqv~~~~~a~~~l~~~~ec 338 (612)
+++.+..+-+.+||-.+..++..| ..++.+..... .++++++.+..+
T Consensus 246 -------DvL~~~d~~~s~fv~~l~s~a~t~-------------------------~alv~~~~~~e-~~~~d~S~~vRA 292 (636)
T KOG2346|consen 246 -------DVLQIKDEEASTFVEDLDSSADTE-------------------------SALVHPAKIHE-DAVRDFSEAVRA 292 (636)
T ss_pred -------hhheeecccccccccchhhhhhhh-------------------------hhhhhhhhhhh-ccccchHHHHHH
Confidence 345666666677777777766655 22333333233 244566766666
Q ss_pred HHHHHHhh-hhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007221 339 VQIALGHC-SLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMA 387 (612)
Q Consensus 339 v~~~~~~c-~~L~~vGLdl~~lL~~lL~p~ve~al~~~~~~i~e~i~~~~ 387 (612)
.+..+.-. ..+--.|++|.+.+.+++.....+-+..++.+|.+.++...
T Consensus 293 ldr~fr~s~~r~~~~a~~l~~~~~el~~~v~~~e~~l~l~ri~~~f~~~L 342 (636)
T KOG2346|consen 293 LDRIFRDSEERLFKLARALTAMLPELLLSVLLRECFLILNRIYQDFRQLL 342 (636)
T ss_pred HHHHcccccchHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655522 23334667777777777777777777777777766655433
No 3
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.84 E-value=1.2e-18 Score=185.60 Aligned_cols=315 Identities=17% Similarity=0.192 Sum_probs=250.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccC
Q 007221 46 SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSE 125 (612)
Q Consensus 46 ~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~~~sl~~~~ 125 (612)
+.+.+++..--..|...+..+..+++...++||..||.+++....+..++.++++.+......+..|.+.+. .+....
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~--~f~~~~ 83 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQ--RFSSKA 83 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 567778888777888888999999999999999999999999999999999999999888888888866653 221111
Q ss_pred CCCccccccc--ccCCCCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHH
Q 007221 126 SFASKNDLLN--LENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRR 203 (612)
Q Consensus 126 d~~~~~~~~~--~~~~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~ 203 (612)
+....+.... ..+ ..+.+--+.|+|.-+|.||..++|++|.++..++++....+++.+ .++.|..++..-.
T Consensus 84 ~~~~~~r~~~~~~l~--~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~-----lv~~i~~ev~~~~ 156 (338)
T PF04124_consen 84 QKISEERKKASLLLE--NHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIP-----LVKSIAQEVEAAL 156 (338)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCch-----hHHHHHHHHHHHH
Confidence 1110000000 000 112244488999999999999999999999999999988887754 6888999998888
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHH
Q 007221 204 QKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA--HSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSA 281 (612)
Q Consensus 204 ~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A--~~lfL~~rs~~L~~~l~~l~~~gs~~~~~YI~~Ls~~fFs~ 281 (612)
..+...|...|+.| +.-+.+.+.|.+|.|++..+.+ +..||.+|...++..+..+... ++..|+.++..+|-..
T Consensus 157 ~~ml~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~---~~~~~lkr~iei~R~~ 232 (338)
T PF04124_consen 157 QQMLSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKS---DPYRYLKRYIEIYREH 232 (338)
T ss_pred HHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhh---hHHHHHHHHHHHHHHH
Confidence 89999999999887 8899999999999999987665 8999999999999988887543 4479999999999999
Q ss_pred HHHHHHHHHHhcCCCCc-----------chhhHHHHHHHHHHHHHHHHhHHhcCcccccCch-HHHHHHHHHHHHhhhhh
Q 007221 282 IAQAACDSLAIFGKETA-----------YTSELVMWATRQTEAFAHLVKRHALASSAAAGGL-RAAAECVQIALGHCSLL 349 (612)
Q Consensus 282 I~~t~~~f~~~F~d~~~-----------~~S~LV~Wa~~eie~f~~l~krqv~~~~~a~~~l-~~~~ecv~~~~~~c~~L 349 (612)
+..++..|+++|++... ..+.+..|+.+.+..|...+++++-.. .++.+ +++.+|+ -.|..|
T Consensus 233 ~fdiitqY~aIF~~e~~~~~~~~~~~~~~~~~l~sw~~~~v~~~l~~L~~~L~~~--~~~~~~sll~q~~----y~~~S~ 306 (338)
T PF04124_consen 233 LFDIITQYRAIFPDESSTSVSLQDRPKFIPSELFSWALHRVSSFLETLEMYLPRV--DESSRESLLTQLM----YFASSF 306 (338)
T ss_pred HHHHHHHHHHHcCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHH----HHHHhc
Confidence 99999999999993211 236788899999999999999997433 11223 3344555 334678
Q ss_pred hhcCCCchHHHHHhhhHHHHHHHHHHHHHH
Q 007221 350 EARGLALCPVLIKLFRPSVEQALDANLKRI 379 (612)
Q Consensus 350 ~~vGLdl~~lL~~lL~p~ve~al~~~~~~i 379 (612)
..+|.||++++..+|...+.+.+..+....
T Consensus 307 ~r~g~DF~~ll~~~~~~~~~~~f~~~~~~a 336 (338)
T PF04124_consen 307 GRVGADFRPLLAPLFERAVLNLFETSVSTA 336 (338)
T ss_pred CccCCChHHHhHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999988888776654
No 4
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=99.70 E-value=1.3e-16 Score=136.91 Aligned_cols=85 Identities=46% Similarity=0.620 Sum_probs=82.3
Q ss_pred cCCCCCChHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHH
Q 007221 30 FKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATL 108 (612)
Q Consensus 30 f~~~~Fd~e~Yv~~~l-~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~ 108 (612)
|++++|||+.|+++++ ..+.++|++++.+|...++..+++||++||+||+.||.||+||+.|+++|.+|+++|+++...
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 007221 109 IHGLAE 114 (612)
Q Consensus 109 I~~Ls~ 114 (612)
++.+++
T Consensus 81 ~~~l~~ 86 (87)
T PF08700_consen 81 IQSLQE 86 (87)
T ss_pred HHHhhc
Confidence 998854
No 5
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=9.7e-14 Score=151.22 Aligned_cols=340 Identities=16% Similarity=0.193 Sum_probs=258.7
Q ss_pred CCCCCChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHH
Q 007221 31 KSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIH 110 (612)
Q Consensus 31 ~~~~Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~ 110 (612)
.+++| +.||.++..++.++++.-...|...+...+..+|...+.||..||++++-+...=.+....++.+-+.--...
T Consensus 17 ~~~~~--~~~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~ 94 (581)
T KOG2069|consen 17 NSPEM--DAYVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLP 94 (581)
T ss_pred cCchh--HHHHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhH
Confidence 44444 5689998877899999999999999999999999999999999999888777665555444444443333344
Q ss_pred Hhhhhhh-----cccccccCCCCcccccccccCCCCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccC
Q 007221 111 GLAEGVH-----IDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTK 185 (612)
Q Consensus 111 ~Ls~~v~-----~~sl~~~~d~~~~~~~~~~~~~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~ 185 (612)
.|..++. .......++.. .. .+ .....+.-+.++|+.+|.||..++|++|.++-..+-+.-...+..|
T Consensus 95 ~L~s~~~~f~~~~~~i~e~~~~~---~~-~l---~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~p 167 (581)
T KOG2069|consen 95 ELTSPCKRFQDFAEEISEHRRLN---SL-TL---DKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIP 167 (581)
T ss_pred HhhhHHHHHHHHHHHhhHhHHHH---HH-HH---hhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccch
Confidence 4444432 00111111000 00 00 0112234488999999999999999999999877766665554433
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHhcccccccc
Q 007221 186 TLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA--HSLLLNAHYQRYQYSMQSLRPSS 263 (612)
Q Consensus 186 ~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A--~~lfL~~rs~~L~~~l~~l~~~g 263 (612)
.++.|...+.+-+..+.++|.+.++.| +...++.+.|.+|.+.+....+ +-.||.+|..++.+.+..+..
T Consensus 168 -----vi~~i~~~v~~tv~~ll~qL~~~l~~p-l~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I~~-- 239 (581)
T KOG2069|consen 168 -----VIQEIATEVEQTVQKLLEQLIQQLRTP-LQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDIST-- 239 (581)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc--
Confidence 688999999999999999999999775 5677888999999998888776 889999999999998888752
Q ss_pred cccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCc------------chhhHHHHHHHHHHHHHHHHhHHhcCcccccCc
Q 007221 264 TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETA------------YTSELVMWATRQTEAFAHLVKRHALASSAAAGG 331 (612)
Q Consensus 264 s~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~~~------------~~S~LV~Wa~~eie~f~~l~krqv~~~~~a~~~ 331 (612)
.++..|++....++-.++..+...|+++|++..+ -.+.|..|+...+..|+.++.+-+.-.. +.
T Consensus 240 -~~~~~~l~~~i~~~r~~lf~~i~qY~aifpe~~~~~n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~---~~ 315 (581)
T KOG2069|consen 240 -NNPYLYLKKTIEIIRVNLFDIITQYLAVFPEDEGDLNPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGI---ES 315 (581)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhh---ch
Confidence 2346899999999999999999999999997421 2378999999999999999997664332 13
Q ss_pred h-HHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 007221 332 L-RAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLT 395 (612)
Q Consensus 332 l-~~~~ecv~~~~~~c~~L~~vGLdl~~lL~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~ 395 (612)
+ +++-.|+..+++. ..+|+||+.++..+|...+.+-...|.....+.+.....+..|...
T Consensus 316 l~~vl~~cmyf~~SF----~rvg~Dfr~~lap~f~~~vl~~F~knvqe~vEkfq~el~~y~~i~~ 376 (581)
T KOG2069|consen 316 LEHVLGQLMYFALSF----GRVGLDFRGLLAPLLECVVLQRFMKNVEEATEKFELELESYYLIQS 376 (581)
T ss_pred HHHHHHHHHHHHHhh----ccccchhcccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Confidence 4 3455787666644 4699999999999999999999999999999998888877777765
No 6
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=9.2e-15 Score=163.80 Aligned_cols=326 Identities=17% Similarity=0.153 Sum_probs=244.8
Q ss_pred chhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-C--
Q 007221 143 DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPS-T-- 219 (612)
Q Consensus 143 ~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s-~-- 219 (612)
....|..+.++.++.++++++|..+..++-.-.+... .+ -...+-..+..+--.|...|...+..+. .
T Consensus 282 ~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~----~~-----~~~~~~~~Lq~~~lfl~~~ll~~~~~~~~le~ 352 (673)
T KOG2215|consen 282 EEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASAC----LQ-----LALTICKPLQMRELFLLNLLLKIFSVERALER 352 (673)
T ss_pred hhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccc----hh-----hhhhhhhhhhHhHhhhhhHHHHHhhhhhhhhh
Confidence 4579999999999999999999999887633221110 00 1233555566666667777776665331 1
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcc
Q 007221 220 RGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAY 299 (612)
Q Consensus 220 ~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~l~~l~~~gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~~~~ 299 (612)
..--.++....|..+|+..+|...||..|+..+ ...+........ ....+++.+.+.+..+.. |...+.|
T Consensus 353 ~~r~~~~~~~~l~el~~~~~at~~~l~~~s~~~-~a~~~~~~~~~~--------r~~~~~~d~~~~l~~~~~-~e~~s~~ 422 (673)
T KOG2215|consen 353 DFRVAQRRHHQLVELGRWSRSTKRLLFKHSESL-SAYRCRDTDEAS--------RFLQVVQDFSEDLCDILK-FEQGSKC 422 (673)
T ss_pred hHHHHhhhHHHHHHhhhhcccchHHHHHHHHHH-HHHHhhhhhhhH--------HHHHHHHHHHHHHHHHhh-hccchHH
Confidence 112455667788999999999999999999888 444443222211 135566667777777777 8888888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHhcCcccccCchHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHH--HHHHHH
Q 007221 300 TSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQA--LDANLK 377 (612)
Q Consensus 300 ~S~LV~Wa~~eie~f~~l~krqv~~~~~a~~~l~~~~ecv~~~~~~c~~L~~vGLdl~~lL~~lL~p~ve~a--l~~~~~ 377 (612)
.....+|+..+++.|...+.+++... ++..+++++|++.+..+|.+|..+|+|+.+..+.++|..++.. +..+.+
T Consensus 423 ~~~~~q~~~~~ldtl~~~l~~s~~e~---~~~~s~~a~iv~~a~~~~~qL~~ig~~lt~~~~~Llr~~le~s~~l~~~~E 499 (673)
T KOG2215|consen 423 LYTSFQVLNKELDTLGRQLPRSYEEQ---GPARSMVAEIVKRAEHTSEQLTLIGLDLTIRDEALLRSKLESSQLLEGFKE 499 (673)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhc---CchHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhHHHhhhhhcchh
Confidence 88888888888888888888876432 2357999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHh-cCCccccC--CCCC-Cccc-----------c------ccccccccchhHHHHHHHHHHHHHhhccccc
Q 007221 378 RIEESTAAMAA-ADDWVLTY--PPMG-TRQA-----------S------SMALQHRLTTSAHRFNLMVQDFFEDVGPLLS 436 (612)
Q Consensus 378 ~i~e~i~~~~~-~d~W~~~~--~~~~-~~~~-----------~------~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~ 436 (612)
-|++++..+.+ ++.|+++. ++.+ .+++ . .-.+|++|+++.+.|.+.+..+++.+.++..
T Consensus 500 ~~~~ald~r~~~ee~W~~~~L~t~s~Lk~l~ee~~~~gv~~~~~~~~~~e~d~~~nl~~q~v~~~~~~~~~le~d~~l~k 579 (673)
T KOG2215|consen 500 GIADALDNRNREEESWVRYLLQTESALKDLSEELSDLGVIYLRQISHELEGDGWLNLSSQLVVSKKQLMHLLEKDLPLGK 579 (673)
T ss_pred hHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHhhhhcccccceEEehhHHHHHHHHHHHHHHHhhhccch
Confidence 99999999999 99999995 4433 2221 0 1128999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCChhhhhcccCCCcccccccccHHHHHHHHhhHHHHHHhhHHHHhhhh
Q 007221 437 MQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKV 511 (612)
Q Consensus 437 ~~L~~~~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~~~~a~t~~qq~~ll~Na~~l~d~llp~~~~~~ 511 (612)
+.+...+++++.+..-.|++++.-... ++.+|.. .+ ++-.++.+-.+|.+...+
T Consensus 580 ~~l~~~lLe~L~e~~~~~lQ~l~~~~~----~~~dP~~---------------~~--~~~q~i~~m~~~v~~~~~ 633 (673)
T KOG2215|consen 580 LELAFQLLELLAETLSIALQSLWLKID----DEADPNI---------------FA--GIRQLILDMELPVCIAAF 633 (673)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc----cccCcch---------------HH--HHHHHHHHhhhhhhHHHh
Confidence 999999999999988888888776644 4433221 11 555566666777776655
No 7
>PF15469 Sec5: Exocyst complex component Sec5
Probab=99.20 E-value=2.3e-10 Score=111.59 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHH------HHHHHHHHHHhhhhhh--cccccccCCCCcccccccccCC
Q 007221 68 EEMRKSVYANYAAFIRTSKEISDLEGELSSIRNL------LSTQATLIHGLAEGVH--IDSLKGSESFASKNDLLNLENK 139 (612)
Q Consensus 68 sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~l------Ls~q~~~I~~Ls~~v~--~~sl~~~~d~~~~~~~~~~~~~ 139 (612)
++||..||+||.+||++.++|..|-.+|..-+.- +......|........ ...+..+++... .....
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~-----~l~~~ 76 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKAD-----KLRNA 76 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHH-----HHHHH
Confidence 6899999999999999999999998888654332 3333333333322221 011111222110 00000
Q ss_pred -CCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 007221 140 -EPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAK-QTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP 217 (612)
Q Consensus 140 -~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~-~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~ 217 (612)
...+..++++++|..|..+|..++|+.||..|.+++.++.++. ..+ .+..+..+|+.+...+...|...|.++
T Consensus 77 l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~-----vf~~v~~eve~ii~~~r~~l~~~L~~~ 151 (182)
T PF15469_consen 77 LEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVP-----VFQKVWSEVEKIIEEFREKLWEKLLSP 151 (182)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1235579999999999999999999999999999999999885 322 689999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 007221 218 STRGAELRAAISALKKLGDGPRAHSLLLNA 247 (612)
Q Consensus 218 s~~~~elr~aV~lL~rLG~~~~A~~lfL~~ 247 (612)
..+..+..++|..|..||..+.-.-.||.+
T Consensus 152 ~~s~~~~~~~i~~Ll~L~~~~dPi~~~l~~ 181 (182)
T PF15469_consen 152 PSSQEEFLKLIRKLLELNVEEDPIWYWLES 181 (182)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHc
Confidence 888999999999999999988777777654
No 8
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.86 E-value=0.00056 Score=78.76 Aligned_cols=440 Identities=16% Similarity=0.136 Sum_probs=265.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHH-hhhhhhccccccc--
Q 007221 48 NEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHG-LAEGVHIDSLKGS-- 124 (612)
Q Consensus 48 ~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~-Ls~~v~~~sl~~~-- 124 (612)
+-+++.....+|.+...++..+.+..+-+||..|+.-.....++-.+...|..-+ ..+++. ..+.+. ..+...
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI---~d~l~~~~~~~i~-~~l~~a~~ 83 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREI---NDLLQSEIENEIQ-PQLRDAAE 83 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHhhccchhH-HHHHHHHH
Confidence 4567888888888888899999999999999999987666666533333222111 111111 000000 000000
Q ss_pred -CCCCccccccc-ccCCCCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHH
Q 007221 125 -ESFASKNDLLN-LENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDR 202 (612)
Q Consensus 125 -~d~~~~~~~~~-~~~~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r 202 (612)
...... .... ..-....+.++.+.+..+.++..+.+++|..|.+.+++++..+...+..+......+..++.+....
T Consensus 84 e~~~L~~-eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~l 162 (593)
T PF06248_consen 84 ELQELKR-ELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSEL 162 (593)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHH
Confidence 000000 0000 0000123557888999999999999999999999999999999886444333455789999999999
Q ss_pred HHHHHHHHHHHHcC------CCC------------------ChH--HHHHHHHHHHhcCCCcHHHHHHHHHHH-HHHHHh
Q 007221 203 RQKLADQLAEAACQ------PST------------------RGA--ELRAAISALKKLGDGPRAHSLLLNAHY-QRYQYS 255 (612)
Q Consensus 203 ~~~L~~~L~~~l~~------~s~------------------~~~--elr~aV~lL~rLG~~~~A~~lfL~~rs-~~L~~~ 255 (612)
+..|...|...... +.. ... .+...+..|-.||..+.....|-+.-- ..|+-.
T Consensus 163 r~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~Pl 242 (593)
T PF06248_consen 163 RENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPL 242 (593)
T ss_pred HHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999876632 111 111 388999999999998776444433222 223333
Q ss_pred cccccc--------cccc-cccchHHhh-------HHHHHHHHHHHHHHHHHhcCCCCcch-hhHHHHHHHHHHHHHHHH
Q 007221 256 MQSLRP--------SSTS-YGGAYTAAL-------SQLVFSAIAQAACDSLAIFGKETAYT-SELVMWATRQTEAFAHLV 318 (612)
Q Consensus 256 l~~l~~--------~gs~-~~~~YI~~L-------s~~fFs~I~~t~~~f~~~F~d~~~~~-S~LV~Wa~~eie~f~~l~ 318 (612)
+..-.. ++.+ ....|.... ...+|+.|..+..-....+...+.-. +-+..+...-.......+
T Consensus 243 I~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~~~ls~~l 322 (593)
T PF06248_consen 243 ISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIWPRLSELL 322 (593)
T ss_pred hcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 321110 0000 112333221 25778888887777666664433211 345667777777777777
Q ss_pred hHHhcCcc--cccCchHHHHHHHHHHHHhhhhhhhcCCCch--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 007221 319 KRHALASS--AAAGGLRAAAECVQIALGHCSLLEARGLALC--PVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVL 394 (612)
Q Consensus 319 krqv~~~~--~a~~~l~~~~ecv~~~~~~c~~L~~vGLdl~--~lL~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~ 394 (612)
-.+.+.+. .....+..+..-++.+..-+..|++.|+=-. ..|.+.....-..-+..-...+.+..+.....|.+..
T Consensus 323 I~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~~~~L~~~~~~i~~~f~~kr~~~iL~~AR~lm~~~~~~~ 402 (593)
T PF06248_consen 323 ISNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSDNTELSEFVDNIETHFANKRCQDILDKARDLMLRDLHDT 402 (593)
T ss_pred HHhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 77766542 1223566667778888889999999998221 2332322222222333444466777788888888776
Q ss_pred cC-CCC-------------CCcc--------c---ccc------ccccccchhHHHHHHHHHHHHHhhcccccccchHHH
Q 007221 395 TY-PPM-------------GTRQ--------A---SSM------ALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKM 443 (612)
Q Consensus 395 ~~-~~~-------------~~~~--------~---~~~------~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~ 443 (612)
+. .|. +... . ... -..|..|.|+..|+.++.+.+.+++. -++.....+
T Consensus 403 v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~c~IS~s~~~l~~L~~~~L~ea~~-~~~~~a~~l 481 (593)
T PF06248_consen 403 VKVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSLFQFPRCRISKSAQELVELAHQTLKEACK-SSERCAAQL 481 (593)
T ss_pred eEecccccccCCCCCCCcccchhhcccchhcccCccccccccccCCcceechhHHHHHHHHHHHHHHHhc-CChhhHHHH
Confidence 61 111 0000 0 000 15789999999999999999999933 344455566
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhhhhcccCCCcccccccccHHHHHH-HHhhHHHHHHhhHHHHhhh
Q 007221 444 LEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIA-LLANASLLADELLPRAAMK 510 (612)
Q Consensus 444 ~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~~~~a~t~~qq~~-ll~Na~~l~d~llp~~~~~ 510 (612)
...+.+||.-|... +|.. -++. =++.+|+-+ ...|+.||++.|+-.+...
T Consensus 482 ~~~~r~i~~ly~~~----vP~~--h~~~-----------l~~ip~~aalf~NdC~ylah~l~~l~~~~ 532 (593)
T PF06248_consen 482 FQTARDIFELYRAV----VPVY--HKKL-----------LESIPQQAALFHNDCMYLAHHLLTLGHEY 532 (593)
T ss_pred HHHHHHHHHHHHHH----ccHH--HHhh-----------cccccHHHHhHhcchHHHHHHHHHhHHHH
Confidence 66777888877543 3310 0000 145678888 5699999999998777643
No 9
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.62 E-value=0.00023 Score=77.51 Aligned_cols=338 Identities=15% Similarity=0.180 Sum_probs=220.7
Q ss_pred CCCChHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHhHHhHHHHHHHHHHHHH
Q 007221 33 DKFDADVYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANY-------AAFIRTSKEISDLEGELSSIRNLLS 103 (612)
Q Consensus 33 ~~Fd~e~Yv~~~l--~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY-------~~FI~aSkEIs~LE~EM~~L~~lLs 103 (612)
|+|||-.|++.++ +.+..+|..+-..+.+-++.+++++.+.|-+-= ..+-.|-..|.+|-..+.+++..=.
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999 888899999999999999999999998886532 2244555567777777777776666
Q ss_pred HHHHHHHHhhhhhhcccccccCCCCcccccccccCC-CCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 007221 104 TQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENK-EPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAK 182 (612)
Q Consensus 104 ~q~~~I~~Ls~~v~~~sl~~~~d~~~~~~~~~~~~~-~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~ 182 (612)
.-...|..++.++. .|.-.+.. +..+ -..+.++-+....+.|..++..|+|.++..++.-...++....
T Consensus 82 ~sE~~V~~it~dIk--~LD~AKrN--------LT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~ 151 (383)
T PF04100_consen 82 ESEQMVQEITRDIK--QLDNAKRN--------LTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFK 151 (383)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 66677777766653 22111111 0000 0336688899999999999999999999999999998886655
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007221 183 QTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP---------STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQ 253 (612)
Q Consensus 183 ~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~---------s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~ 253 (612)
... +-..+..+..++...+..|.+++..++..- ......+..|...+--||...+ +-++.-.-+..-
T Consensus 152 ~yk--si~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r--~~li~wf~~~qL 227 (383)
T PF04100_consen 152 PYK--SIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVR--EELIDWFCNKQL 227 (383)
T ss_pred ccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHH--HHHHHHHHHHHH
Confidence 443 122688999999999999999999876331 1123578899999999998744 333332222222
Q ss_pred HhcccccccccccccchHHhhHHHHHHHHHHHHHHH----HHhcCCCCc-chhhHHHHHHHHHHHHHHHHhHHhcCcccc
Q 007221 254 YSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDS----LAIFGKETA-YTSELVMWATRQTEAFAHLVKRHALASSAA 328 (612)
Q Consensus 254 ~~l~~l~~~gs~~~~~YI~~Ls~~fFs~I~~t~~~f----~~~F~d~~~-~~S~LV~Wa~~eie~f~~l~krqv~~~~~a 328 (612)
...+.+=..++- ..-++++.+. |.=++.+...| ..+||..=. ...-.+.+|.-==+.+..++.+. +..
T Consensus 228 ~eY~~iF~~~~e--~~~Ld~i~RR-y~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~--~~~-- 300 (383)
T PF04100_consen 228 KEYRRIFRENDE--AASLDNIDRR-YAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKR--KSE-- 300 (383)
T ss_pred HHHHHHHccccc--ccchhhHHHH-HHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhc--CCC--
Confidence 222222212221 2344555543 33344444444 455554311 11223334433333444455442 111
Q ss_pred cCchHHHHHHHHHHHHhhhhhhh-c-C------------------CCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007221 329 AGGLRAAAECVQIALGHCSLLEA-R-G------------------LALCPVLIKLFRPSVEQALDANLKRIEESTAAMAA 388 (612)
Q Consensus 329 ~~~l~~~~ecv~~~~~~c~~L~~-v-G------------------Ldl~~lL~~lL~p~ve~al~~~~~~i~e~i~~~~~ 388 (612)
.+......|++.++..=..|.. . | -.|...+...|.|++.-=++..-+.+.+-+...+.
T Consensus 301 -~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~ 379 (383)
T PF04100_consen 301 -LDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFIS 379 (383)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 2556777888888776555542 2 1 24667788899999877778878888889999999
Q ss_pred cCCc
Q 007221 389 ADDW 392 (612)
Q Consensus 389 ~d~W 392 (612)
+++|
T Consensus 380 ~~~w 383 (383)
T PF04100_consen 380 EEKW 383 (383)
T ss_pred hcCC
Confidence 9999
No 10
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.56 E-value=0.00019 Score=84.68 Aligned_cols=412 Identities=15% Similarity=0.136 Sum_probs=237.6
Q ss_pred hhcccCCCCCChHHHHHHhc-CCCH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHhHHhHH
Q 007221 26 GLNLFKSDKFDADVYVKSKC-SLNE----KE----IRQLCSYLLDLKRASAEEMRKSVYANYAAFI----RTSKEISDLE 92 (612)
Q Consensus 26 ~~~~f~~~~Fd~e~Yv~~~l-~~~e----~~----L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI----~aSkEIs~LE 92 (612)
|+..|.+++|||-+||+.-+ ..+. .. +-.+..+|+ -..+++-..+-+.=.+=+ ++.+||..|.
T Consensus 1 d~s~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLq----l~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~ 76 (766)
T PF10191_consen 1 DLSAFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQ----LYSQEVNASLEETSQQALQRVPRVLREVDRLR 76 (766)
T ss_pred ChhhhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35679999999999999999 2221 23 334444444 333333334444444445 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh--cccccccCCCCcccccccccCCC-CCchhhHhhhhhhHHHHHHHccCHHHHHH
Q 007221 93 GELSSIRNLLSTQATLIHGLAEGVH--IDSLKGSESFASKNDLLNLENKE-PSDLEKWSVEFPDLLDVLLAERRIDEALT 169 (612)
Q Consensus 93 ~EM~~L~~lLs~q~~~I~~Ls~~v~--~~sl~~~~d~~~~~~~~~~~~~~-~~~~l~wl~elpdeLDv~IAer~feeAV~ 169 (612)
.|...|++-|..-...|........ +..+.. -|.. + ..+..-.+ ..+--.|- .+-.++|..++.++++.+.+
T Consensus 77 ~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~-ld~v-K--~rm~~a~~~L~EA~~w~-~l~~~v~~~~~~~d~~~~a~ 151 (766)
T PF10191_consen 77 QEAASLQEQMASVQEEIKAVEQDTAQSMAQLAE-LDSV-K--SRMEAARETLQEADNWS-TLSAEVDDLFESGDIAKIAD 151 (766)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH-HHHH-H--HHHHHHHHHHHHHHhHH-HHHHHHHHHHhcCCHHHHHH
Confidence 9999998777666655554422111 000000 0000 0 00000000 12223554 68889999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 007221 170 ALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQ-KLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAH 248 (612)
Q Consensus 170 ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~-~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lfL~~r 248 (612)
-+...++.+.-.++.|+-. .....-..+.+|-. .+.-+|...+.+ -....++..+..+.++|+.++....|-++|
T Consensus 152 ~l~~m~~sL~~l~~~pd~~--~r~~~le~l~nrLEa~vsp~Lv~al~~--~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r 227 (766)
T PF10191_consen 152 RLAEMQRSLAVLQDVPDYE--ERRQQLEALKNRLEALVSPQLVQALNS--RDVDAAKEYVKIFSSIGREPQLEQYYCKCR 227 (766)
T ss_pred HHHHHHHHHHHHcCCCchh--HHHHHHHHHHHHHHHHhhHHHHHHHHh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998888776221 11112222222221 223444444443 336799999999999999999999999999
Q ss_pred HHHHHHhcccccccc-cccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHhHHhcCcc-
Q 007221 249 YQRYQYSMQSLRPSS-TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASS- 326 (612)
Q Consensus 249 s~~L~~~l~~l~~~g-s~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~~~~~S~LV~Wa~~eie~f~~l~krqv~~~~- 326 (612)
...++..=....... +.....++...-..+.+.+..=..|...+|++... .+..-..+-+......|..++-...
T Consensus 228 ~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~---~~~~ll~~~L~~L~PS~~~~l~~al~ 304 (766)
T PF10191_consen 228 KAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP---VLPKLLAETLSALQPSFPSRLSSALK 304 (766)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhcCccHHHHHHHHHh
Confidence 999988865554333 11224666666777777888888899999998542 2333333333333333332221110
Q ss_pred cccC--chHHHHHHHHHHHHhhhhhhh----cC--C---CchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 007221 327 AAAG--GLRAAAECVQIALGHCSLLEA----RG--L---ALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLT 395 (612)
Q Consensus 327 ~a~~--~l~~~~ecv~~~~~~c~~L~~----vG--L---dl~~lL~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~ 395 (612)
.+.+ .+....++-+++...+..|+. .. . .+..++.-++.|. ......|-..=+..+...+ ...
T Consensus 305 ~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF-~~~q~~Yg~lE~~~L~~~L-----~~l 378 (766)
T PF10191_consen 305 RAGPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPF-KPYQQRYGELERRFLSAQL-----SAL 378 (766)
T ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-----Hhc
Confidence 0112 266666777666665544442 11 1 1223444444444 3333444333333322222 222
Q ss_pred CCCCCCccccccccccccchhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHhhCC
Q 007221 396 YPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALP 463 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~y~~~l~~al~ 463 (612)
..... -. ..+-=.|..|..+......+=++-|..+..--=...++..|..+|..|++.+...+.
T Consensus 379 ~~~~~-~~---~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~Ald~~~~~y~~~~~~~l~ 442 (766)
T PF10191_consen 379 DLESA-EL---SDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLLKALDSIFSQYLSSLTATLR 442 (766)
T ss_pred ccCCC-cH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 11 112225667777888888888888888865554446678888899999887655554
No 11
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.56 E-value=4.8e-06 Score=87.34 Aligned_cols=218 Identities=17% Similarity=0.173 Sum_probs=160.3
Q ss_pred cCCCCCChHHHHHHhc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHH
Q 007221 30 FKSDKFDADVYVKSKC--S-LNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQA 106 (612)
Q Consensus 30 f~~~~Fd~e~Yv~~~l--~-~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~ 106 (612)
|=+++|||..|.-+.+ . .+..++.....+|....+.....|-+.|-+||..|..+-+.|..++.++..--..+.+.+
T Consensus 8 yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R 87 (291)
T PF10475_consen 8 YFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLR 87 (291)
T ss_pred hcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999986666 4 677889999999999999999999999999999999999999999999988877777777
Q ss_pred HHHHHhhhhhhcccc-----cccCCCCcccccccccCCCCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 007221 107 TLIHGLAEGVHIDSL-----KGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEA 181 (612)
Q Consensus 107 ~~I~~Ls~~v~~~sl-----~~~~d~~~~~~~~~~~~~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~ 181 (612)
..+....+.+.-.++ ..++... .... ...+.++-+.+.-..++.++++++|..|++++...++.+..+
T Consensus 88 ~~L~~~~~~~~~~~L~Il~~~rkr~~l-----~~ll--~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 88 RNLKSADENLTKSGLEILRLQRKRQNL-----KKLL--EKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL 160 (291)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHH--HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 777776655431111 1111110 0000 123446778888889999999999999999999999999887
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcccc
Q 007221 182 KQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSL 259 (612)
Q Consensus 182 ~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~l~~l 259 (612)
.+.. ++..+..++.+....+.+.|-..|..- ...+..=.+....-.-||+...+.+-+..+....|......+
T Consensus 161 ~~~~-----c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~v 235 (291)
T PF10475_consen 161 KGYS-----CVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSV 235 (291)
T ss_pred ccch-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 678888888888888887777777442 334445555556666677777777766666666655555543
No 12
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=98.18 E-value=0.0022 Score=72.33 Aligned_cols=275 Identities=14% Similarity=0.163 Sum_probs=169.1
Q ss_pred CCChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 007221 34 KFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLA 113 (612)
Q Consensus 34 ~Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~Ls 113 (612)
+-|||.-.. ..+-.||+..+..+.+..+.-.++|++.|=+-|..-|.|+++|.+|.+--..|..-+..-..-+.+|.
T Consensus 7 ~rDvd~LFe---thsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~ 83 (863)
T KOG2033|consen 7 NRDVDTLFE---THSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLH 83 (863)
T ss_pred ccCHHHHHH---hCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 345554444 56788999999999999999999999999999999999999999998777776444444333344443
Q ss_pred hhhhcccccccCCCCcccccccccCCC---CCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHH
Q 007221 114 EGVHIDSLKGSESFASKNDLLNLENKE---PSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPA 190 (612)
Q Consensus 114 ~~v~~~sl~~~~d~~~~~~~~~~~~~~---~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~ 190 (612)
.+.. ..+.+..+... .... ..-..+.+.+.|+.+=-++...+|=+|+.+|..++.+-.+.-.... +++
T Consensus 84 a~sv------A~tp~raeqnp--~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLds-ss~ 154 (863)
T KOG2033|consen 84 ANSV------AKTPGRAEQNP--AGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDS-SSM 154 (863)
T ss_pred cccc------cCCcchhhcCc--hhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCC-CcH
Confidence 2111 01111000000 0000 1123688999999999999999999999999988877663221111 111
Q ss_pred HH---HHHHHHHHHH---HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHhccccccc
Q 007221 191 ML---ISLENTIIDR---RQKLADQLAEAACQPSTRGAELRAAISALKKLGD--GPRAHSLLLNAHYQRYQYSMQSLRPS 262 (612)
Q Consensus 191 ~~---~~i~~kl~~r---~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~--~~~A~~lfL~~rs~~L~~~l~~l~~~ 262 (612)
.. ..+..+...- +..+..+-...|..+++.-.....++..+.-|.+ ++++.++||..|...+.+.+..
T Consensus 155 ll~nfP~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdpsqvLelFL~~Rk~~il~lLn~---- 230 (863)
T KOG2033|consen 155 LLKNFPALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDESDPSQVLELFLEKRKEHILHLLND---- 230 (863)
T ss_pred HHhhcHHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc----
Confidence 11 1111111111 1333333344444555555555555555555554 4678999999999999998887
Q ss_pred ccccccchHHhhHHHHHHHHHHHHHHHHHhcCCC-------------------CcchhhHHHHHHHHHHHHHHHHhHHhc
Q 007221 263 STSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE-------------------TAYTSELVMWATRQTEAFAHLVKRHAL 323 (612)
Q Consensus 263 gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~-------------------~~~~S~LV~Wa~~eie~f~~l~krqv~ 323 (612)
|..+|..-...++.+ ...|+.|+..--++|-.. +.+-+.+-.|...-.+.-+..+-|+..
T Consensus 231 ~p~~~~~vka~il~~-v~vl~~Tl~qv~elfl~~~Llfstle~c~gq~~~~~i~emE~~l~~sf~~lpesim~f~pr~lv 309 (863)
T KOG2033|consen 231 GPSEPRRVKATILNI-VDVLKKTLAQVEELFLHGELLFSTLEVCNGQYKCELIREMEADLAYSFEKLPESIMDFVPRHLV 309 (863)
T ss_pred CCCccchhHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHhcCCccCCCCchHHHHHHHHHHHhhHHHHhhccchhcc
Confidence 222333444444433 344555555555555321 113467778888888888888777765
Q ss_pred Cc
Q 007221 324 AS 325 (612)
Q Consensus 324 ~~ 325 (612)
++
T Consensus 310 ~k 311 (863)
T KOG2033|consen 310 EK 311 (863)
T ss_pred cc
Confidence 43
No 13
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.018 Score=66.77 Aligned_cols=349 Identities=15% Similarity=0.195 Sum_probs=203.6
Q ss_pred cCCCCCChHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHhHHhHHHHHHH---------
Q 007221 30 FKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRAS---AEEMRKSVYANYAAFIRTSKEISDLEGELSS--------- 97 (612)
Q Consensus 30 f~~~~Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~---~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~--------- 97 (612)
|.+++|+|.=|+-..= ...-..+++.-+..+|+.. .+-=+..|-.|+..||..=+++..++..+.+
T Consensus 166 l~se~Fspkw~L~enH--~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~ 243 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENH--QDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSG 243 (934)
T ss_pred cccccCChhHHHHhhh--hhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchH
Confidence 6899999999998754 2233344444444444333 2334556778999999999999998877766
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccCCCCcccccccccCCCCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHH
Q 007221 98 IRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHL 177 (612)
Q Consensus 98 L~~lLs~q~~~I~~Ls~~v~~~sl~~~~d~~~~~~~~~~~~~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~ 177 (612)
..| |.+++....+-++.+- ..+-.+++.....+.- -. .....++|+.+|..++.-+.-|+|+-+|.-|++++..
T Consensus 244 t~~-l~n~i~~~~s~ad~iF-~~vl~Rk~~ADstRsv--L~--~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl 317 (934)
T KOG2347|consen 244 TTK-LENCIKNSTSRADLIF-EDVLERKDKADSTRSV--LG--VLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSL 317 (934)
T ss_pred HHH-HHHHHHHhhhHHHHHH-HHHHhcccccccHHHH--HH--HHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHh
Confidence 112 2333222222222221 1222233332110000 00 1245789999999999999999999999999999988
Q ss_pred HHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCc-----------HHHHHHHH
Q 007221 178 AAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGP-----------RAHSLLLN 246 (612)
Q Consensus 178 L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~-----------~A~~lfL~ 246 (612)
.....- + .++.+-+.++.|+..+...|.+.+..+..+-.+..+.|.+|.-|.-.. +-..-++.
T Consensus 318 ~~~t~v-~-----~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~wq~I~~q~k~i~~L~~ 391 (934)
T KOG2347|consen 318 FGKTEV-N-----LFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPVWQCIGVQNKRILGLLE 391 (934)
T ss_pred hccccc-H-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCchhhhccccchHHHhhhh
Confidence 764422 1 588888999999999999999999888888888899999988554321 11122222
Q ss_pred HHHHHHHHhccccc---------ccc--------------------------cccccchHHhhHHHHHHHHHHHHHHHHH
Q 007221 247 AHYQRYQYSMQSLR---------PSS--------------------------TSYGGAYTAALSQLVFSAIAQAACDSLA 291 (612)
Q Consensus 247 ~rs~~L~~~l~~l~---------~~g--------------------------s~~~~~YI~~Ls~~fFs~I~~t~~~f~~ 291 (612)
.+.......+..++ ..| +..-.+||.+|+.+..+.+-.-=+--..
T Consensus 392 s~~~~~~~~l~~~~~~~~~~q~s~~g~~~S~t~s~~~~~~~q~~~~~~~~~k~~~r~~fiekL~~l~~s~lP~fWKl~~s 471 (934)
T KOG2347|consen 392 SCWDDHVARLEGLRLSDKWTQPSQNGVHLSDTASSMENSQNQVINEWKIREKTPERVNFIEKLTDLLLSQLPIFWKLAIS 471 (934)
T ss_pred hcchhHHHHhhcccccccccchhhcccccCchHHHHhhhhhhhccchhhhhhchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 22222222222222 011 1223589999999888876543333333
Q ss_pred h-----cCCCCcch-hh-----HHHHHHHHHHHHHHHHhHHhc---Ccc----ccc----------CchHHHHHHHHHHH
Q 007221 292 I-----FGKETAYT-SE-----LVMWATRQTEAFAHLVKRHAL---ASS----AAA----------GGLRAAAECVQIAL 343 (612)
Q Consensus 292 ~-----F~d~~~~~-S~-----LV~Wa~~eie~f~~l~krqv~---~~~----~a~----------~~l~~~~ecv~~~~ 343 (612)
. |....-+. +. -...++.--+.|..++..-.. +.+ .+. ..+.-++.|++.++
T Consensus 472 y~~G~~~~~~sq~~~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr 551 (934)
T KOG2347|consen 472 YFNGDLFSPSSQVQDSDINKMEQNNEVREKREVFHSLVELALMDRFTLSQSDGKAKSPFGDADISRSLLPWMPLAIKTVR 551 (934)
T ss_pred HhcccccCcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCcCCcccccccCccchhHHHHhH
Confidence 3 33211000 11 111122222223333322211 000 000 01234579999999
Q ss_pred HhhhhhhhcCCCchHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHhcCCccccC
Q 007221 344 GHCSLLEARGLALCPVLIKLFRPSVEQALD-------ANLKRIEESTAAMAAADDWVLTY 396 (612)
Q Consensus 344 ~~c~~L~~vGLdl~~lL~~lL~p~ve~al~-------~~~~~i~e~i~~~~~~d~W~~~~ 396 (612)
.-|..|..-- |+...+++|-.+-..+ .-+++-.|.++.++..+.|.+..
T Consensus 552 ~~~~sL~ale----~~P~~~lq~Iq~li~~~rl~~~~~~~~~~~e~is~l~~re~W~~~s 607 (934)
T KOG2347|consen 552 KACQSLEALE----SLPHDALQPIQKLITEARLQCLSSWMRASTERISTLAKRETWIPDS 607 (934)
T ss_pred HHHHHHHHhh----hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 9998887633 2333455555444443 44556678889999999999984
No 14
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.1 Score=59.68 Aligned_cols=409 Identities=12% Similarity=0.122 Sum_probs=232.2
Q ss_pred hhhhcccCCCCCChHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHH
Q 007221 24 EEGLNLFKSDKFDADVYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNL 101 (612)
Q Consensus 24 ~~~~~~f~~~~Fd~e~Yv~~~l--~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~l 101 (612)
.+-.+.|.+|+|+.=.|+..++ +.+..+|..+.+++....+..+.+++.+|-.+=|.=-+.-+-..+.+.-|.+|-+.
T Consensus 8 ~~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~ 87 (793)
T KOG2180|consen 8 YDINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQK 87 (793)
T ss_pred HHHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 3566789999999999999999 88999999999999999999999999999876665555544444455555555544
Q ss_pred HHHHH-------HHHHHhhhhhhcccccccCCCCcccccccccCCC-CCchhhHhhhhhhHHHHHHHccCHHHHHHHHHH
Q 007221 102 LSTQA-------TLIHGLAEGVHIDSLKGSESFASKNDLLNLENKE-PSDLEKWSVEFPDLLDVLLAERRIDEALTALDE 173 (612)
Q Consensus 102 Ls~q~-------~~I~~Ls~~v~~~sl~~~~d~~~~~~~~~~~~~~-~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k 173 (612)
+.+.+ ..|..++.++- .+.-.+... ...- ..+.+.-|.+--+.|.+++..|.|-+|+..+..
T Consensus 88 i~eiks~ae~Te~~V~eiTrdIK--qLD~AKkNL--------TtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqa 157 (793)
T KOG2180|consen 88 IQEIKSVAESTEAMVQEITRDIK--QLDFAKKNL--------TTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQA 157 (793)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH--hhhHHHhhH--------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHH
Confidence 44433 34444443332 111100100 0000 224577788999999999999999999999998
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChH----------HHHHHHHHHHhcCCCcHHHHH
Q 007221 174 GEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGA----------ELRAAISALKKLGDGPRAHSL 243 (612)
Q Consensus 174 ~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s~~~~----------elr~aV~lL~rLG~~~~A~~l 243 (612)
.-.+++....-. +...+..+...++..+..|..++.+.+...- +++ .+..+...+--|.-.. ++.
T Consensus 158 i~~ll~~F~~Yk--~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F-~~~~~~~~~~~l~~l~daC~v~d~lepsv--ree 232 (793)
T KOG2180|consen 158 ILQLLNHFIAYK--SVDEIANLSESIDKLKKSLLSQIFQDFKAAF-SGGETHEEALLLQKLSDACLVVDALEPSV--REE 232 (793)
T ss_pred HHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCccHHHHHHHHHHHHHHhCCcc--HHH
Confidence 888887544332 2226889999999999999999998885531 111 2222222222222211 122
Q ss_pred HHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCC----C-CcchhhHHHHHHHHHHHHHHHH
Q 007221 244 LLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGK----E-TAYTSELVMWATRQTEAFAHLV 318 (612)
Q Consensus 244 fL~~rs~~L~~~l~~l~~~gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d----~-~~~~S~LV~Wa~~eie~f~~l~ 318 (612)
+++.+=.+.-....++=.++.- ...++++.+.| .-++.-..+|...|+. . ..-.-..+.+|..-=+....++
T Consensus 233 lIkwf~~qqL~ey~~IF~en~E--~a~LDkidrRY-~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il 309 (793)
T KOG2180|consen 233 LIKWFCSQQLEEYEQIFRENEE--AASLDKLDRRY-AWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESIL 309 (793)
T ss_pred HHHHHHHHHHHHHHHHHhccHh--hhhhhhHHHHH-HHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 2221111111111111111111 34444554433 2233344455544432 1 0011223445554444445555
Q ss_pred hHHhcCcccccCchHHHHHHHHHHHHhhhhhhh-cC-------------------CCchHHHHHhhhHHHHHHHHHHHHH
Q 007221 319 KRHALASSAAAGGLRAAAECVQIALGHCSLLEA-RG-------------------LALCPVLIKLFRPSVEQALDANLKR 378 (612)
Q Consensus 319 krqv~~~~~a~~~l~~~~ecv~~~~~~c~~L~~-vG-------------------Ldl~~lL~~lL~p~ve~al~~~~~~ 378 (612)
++.--. .+.....-+++.+...=..|.- .| -.|...+...|.||+.--++..-+.
T Consensus 310 ~~~~~~-----~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~ 384 (793)
T KOG2180|consen 310 KRRKKE-----PDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKE 384 (793)
T ss_pred HHhhhC-----ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHH
Confidence 554311 2455666666666655554442 22 2667788888888888777777778
Q ss_pred HHHHHHHHHhcCCccccCCCCCCccccccccccccchhHHHHHHHHHHHHHhhcccccc-c-chHHHHHHHHHHHHHHHH
Q 007221 379 IEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSM-Q-LGGKMLEGLFQVFNSYVS 456 (612)
Q Consensus 379 i~e~i~~~~~~d~W~~~~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~-~-L~~~~~~~l~~lf~~y~~ 456 (612)
+.+-+...+.+.+|..-+.+..... ...|.+|+.-|. .+...+-.|..|..- + +..... ...+..+.|-.
T Consensus 385 l~ellek~v~e~~~~~~p~~~~~~~------s~vlpSsadlF~-~Ykkcltq~~~Ls~n~dpl~~~~~-~f~k~LreYa~ 456 (793)
T KOG2180|consen 385 LSELLEKFVSEEKWDGEPKSNTDEE------SLVLPSSADLFV-AYKKCLTQCSELSENNDPLIALLA-VFSKWLREYAQ 456 (793)
T ss_pred HHHHHHHHHhhhccCCCCCCCcccc------cccCccHHHHHH-HHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHH
Confidence 8888888899999985221212111 234555555443 334445555555433 2 222222 44455556654
Q ss_pred HH-HhhCC
Q 007221 457 ML-IKALP 463 (612)
Q Consensus 457 ~l-~~al~ 463 (612)
.+ ...+|
T Consensus 457 kil~~~lP 464 (793)
T KOG2180|consen 457 KILLGNLP 464 (793)
T ss_pred HHhhccCC
Confidence 33 33345
No 15
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.47 E-value=6.4e-05 Score=69.76 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=13.5
Q ss_pred cccCCCCCChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHH
Q 007221 28 NLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQAT 107 (612)
Q Consensus 28 ~~f~~~~Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~ 107 (612)
+.|..|+|||+.||.+. ..-..|..++.+|......+.++|-..|=+||..||.-|..+..++..+.+++.=|...+.
T Consensus 6 ~~F~~~~Fd~d~Fl~~~--~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~ 83 (133)
T PF06148_consen 6 EEFTKPDFDVDEFLSSN--RRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFRE 83 (133)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 46899999999999993 3445677788899999999999999999999999999999999999999999888888877
Q ss_pred HHHHhhhhh
Q 007221 108 LIHGLAEGV 116 (612)
Q Consensus 108 ~I~~Ls~~v 116 (612)
.|.+..+.+
T Consensus 84 ~v~~~~~~l 92 (133)
T PF06148_consen 84 EVESVRDEL 92 (133)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHHHHH
Confidence 777764433
No 16
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.19 E-value=0.0041 Score=57.72 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=76.3
Q ss_pred ccCCCCCChHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHH
Q 007221 29 LFKSDKFDADVYVKSKC------SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLL 102 (612)
Q Consensus 29 ~f~~~~Fd~e~Yv~~~l------~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lL 102 (612)
.|-+|+|||..|...++ +.++-++..--.+|..-.+.++..|++.|.+||...+.-+..|..+|+.+..++..+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 58899999999999999 233566677777777777899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhhhhh
Q 007221 103 STQATLIHGLAEGVH 117 (612)
Q Consensus 103 s~q~~~I~~Ls~~v~ 117 (612)
......+.-|...+.
T Consensus 82 ~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 82 ESLQSSYERLRSEVI 96 (132)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888887766554
No 17
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=1.7 Score=48.76 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=68.4
Q ss_pred hhhhhhhhccccccCCcchhhhhcccCCCCCChHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007221 5 AKTARSRAAAAAENGGAKIEEGLNLFKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIR 83 (612)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~Fd~e~Yv~~~l-~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~ 83 (612)
+|+|...|.|..-|.- +|==+-..|..+|||.|.|+.... ....++|| ++|.---..+...|-.++-+.|..|+-
T Consensus 4 ~k~sa~~~~g~~~d~~-kLcFdk~eFmkedFdve~f~s~~R~~v~letLr---ddLrlylksl~~aMieLIN~DYADFVn 79 (705)
T KOG2307|consen 4 EKTSAALPNGFYIDES-KLCFDKTEFMKEDFDVERFMSLARQKVDLETLR---DDLRLYLKSLQNAMIELINDDYADFVN 79 (705)
T ss_pred ccccccCCCCCCCCcc-ccccChhhhccccCCHHHHHHHHhccCCHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 4555555555332211 232244568999999999999988 66666655 444433336667889999999999999
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHHHh
Q 007221 84 TSKEISDLEGELSSIRNLLSTQATLIHGL 112 (612)
Q Consensus 84 aSkEIs~LE~EM~~L~~lLs~q~~~I~~L 112 (612)
-|--...|..-+.+++.=|...+.-|.++
T Consensus 80 LStnLVgld~aln~i~qpL~qlreei~s~ 108 (705)
T KOG2307|consen 80 LSTNLVGLDDALNKIEQPLNQLREEIKST 108 (705)
T ss_pred hhhhhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 88777776666666665555555555543
No 18
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=8 Score=42.94 Aligned_cols=216 Identities=15% Similarity=0.127 Sum_probs=116.3
Q ss_pred hcccCCCCCChHHHHHHhc-----CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHH
Q 007221 27 LNLFKSDKFDADVYVKSKC-----SLN-------EKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGE 94 (612)
Q Consensus 27 ~~~f~~~~Fd~e~Yv~~~l-----~~~-------e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~E 94 (612)
+-.|.+..|||-.||+..| ..+ ++-|+.++.+|+-........+...--.-...-=+|+|+...|..+
T Consensus 3 lg~fSdekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~D 82 (828)
T KOG4182|consen 3 LGAFSDEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQAD 82 (828)
T ss_pred CccccccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHH
Confidence 4579999999999999988 222 4567888887775554444444443333334556789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---hcccccccCCCCcccccccccCCCCCchhhHhhhhhhHHHHHHHccCHHHHHHHH
Q 007221 95 LSSIRNLLSTQATLIHGLAEGV---HIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTAL 171 (612)
Q Consensus 95 M~~L~~lLs~q~~~I~~Ls~~v---~~~sl~~~~d~~~~~~~~~~~~~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll 171 (612)
...|+.-++...-.+... +|- +++.+- +-|... .+.....+....-.-+..+..+|..-.+.++...|-+-+
T Consensus 83 a~~Lq~kma~il~el~~a-egesadCiAaLa-Rldn~k---QkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkL 157 (828)
T KOG4182|consen 83 AHRLQEKMAAILLELAAA-EGESADCIAALA-RLDNKK---QKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKL 157 (828)
T ss_pred HHHHHHHHHHHHHHHHHH-hCChHHHHHHHH-HhccHH---HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHH
Confidence 999987776544333322 111 112221 001100 000000001111122456667777778888888887777
Q ss_pred HHHHHHHHhhcccCCCCHHHHHHHHHHHH---HHHHHHH-HHHHHHHcCCCCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 007221 172 DEGEHLAAEAKQTKTLDPAMLISLENTII---DRRQKLA-DQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNA 247 (612)
Q Consensus 172 ~k~~~~L~~~~~~~~~~~~~~~~i~~kl~---~r~~~L~-~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lfL~~ 247 (612)
...++.|......+ .+...+.+++ .|...|+ -.|.+.+.... ......-+..++|.|+..+-...|=+.
T Consensus 158 aalqkcL~A~~ela-----efAe~qkQlE~~edRLEAlaqPrltda~a~~k--td~AQd~r~I~irIgRfkqLelqY~~V 230 (828)
T KOG4182|consen 158 AALQKCLHAQEELA-----EFAERQKQLEDFEDRLEALAQPRLTDAFAEGK--TDQAQDFRQIFIRIGRFKQLELQYRAV 230 (828)
T ss_pred HHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHcCchHHHHHHccC--hHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 77776665433322 2223333333 2222222 12333332221 123344456789999888766555555
Q ss_pred HHHHHHH
Q 007221 248 HYQRYQY 254 (612)
Q Consensus 248 rs~~L~~ 254 (612)
+.+-++.
T Consensus 231 q~k~ikQ 237 (828)
T KOG4182|consen 231 QKKFIKQ 237 (828)
T ss_pred HHHHHHH
Confidence 5555443
No 19
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=92.80 E-value=1 Score=42.29 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=59.9
Q ss_pred ccCCCCCChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhH-------HHHHHHHHHH
Q 007221 29 LFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDL-------EGELSSIRNL 101 (612)
Q Consensus 29 ~f~~~~Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~L-------E~EM~~L~~l 101 (612)
.+-.++|+|=..+-.++..+--++.+...++.++++.++..|+..|-+||..|=++=-..+.+ ...+.++|+-
T Consensus 15 ~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~ 94 (142)
T PF04048_consen 15 FMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKES 94 (142)
T ss_pred HHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999993333468888899999999999999999999999998764444444 4444455544
Q ss_pred HHHHHHHH
Q 007221 102 LSTQATLI 109 (612)
Q Consensus 102 Ls~q~~~I 109 (612)
|.+-+..+
T Consensus 95 L~~ak~~L 102 (142)
T PF04048_consen 95 LQEAKSLL 102 (142)
T ss_pred HHHHHHHH
Confidence 44444443
No 20
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=2.9 Score=49.30 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhHhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCccccccc
Q 007221 63 KRASAEEMRKSVYANYAAFIR-------TSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLN 135 (612)
Q Consensus 63 k~~~~sdLq~~VY~NY~~FI~-------aSkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~~~sl~~~~d~~~~~~~~~ 135 (612)
=+..+..||+.|.++|..|-+ ++.+|.+-......+++-|.+.+.+|++=.+... .-|..+ .+.+.
T Consensus 59 Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLq-klw~~~----~q~K~-- 131 (982)
T KOG3691|consen 59 YKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQ-KLWAEN----SQYKK-- 131 (982)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHhh----hhHHH--
Confidence 345688888888888887754 5777777788888888888888888765544333 122110 00000
Q ss_pred ccCCCCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHh-hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007221 136 LENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAE-AKQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (612)
Q Consensus 136 ~~~~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~-~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l 214 (612)
.- +..+.++-+..+|+.+..+|+-++|-+|-+++..+-..+.. +.... .+..++.++.-+...|.+.|.+++
T Consensus 132 Vi--~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VE-----gLs~l~~ele~~~~~L~~~L~eEL 204 (982)
T KOG3691|consen 132 VI--EVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVE-----GLSDLRSELEGLLSHLEDILIEEL 204 (982)
T ss_pred HH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-----hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01233566889999999999999999999999999887753 22211 467788888888888888888888
Q ss_pred cC
Q 007221 215 CQ 216 (612)
Q Consensus 215 ~~ 216 (612)
.+
T Consensus 205 v~ 206 (982)
T KOG3691|consen 205 VS 206 (982)
T ss_pred HH
Confidence 54
No 21
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=86.37 E-value=22 Score=38.29 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=48.7
Q ss_pred cccccchhHHHHHHHHHHHHHhhcccccccchHHH-H-----------HHHHHHHHHHHHHHHhhCCCChhhhhcccCCC
Q 007221 409 LQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKM-L-----------EGLFQVFNSYVSMLIKALPGSMEEEANFEGSG 476 (612)
Q Consensus 409 ~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~-~-----------~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~ 476 (612)
.-..+|..+..|.+.+-++-+-+..+....-.+.- . +.-...|..|+..+|.+|-...+...
T Consensus 139 ~Vh~lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks------ 212 (371)
T PF03081_consen 139 GVHPLTSYVMNYLKRLAEYRDTLESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEAKS------ 212 (371)
T ss_dssp ---HHHHHHHHHHHHHHCTHHHHHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHH------
Confidence 34589999999999999998888888655422110 0 11334455555555555442212221
Q ss_pred cccccccccHHHHHHHHhhHHHHHHhh
Q 007221 477 NKIVRMAENEAQQIALLANASLLADEL 503 (612)
Q Consensus 477 ~~~~~~a~t~~qq~~ll~Na~~l~d~l 503 (612)
+..+ ..--+.+-++.|..||...+
T Consensus 213 -~~y~--d~~l~~iFLlNN~~yI~~~~ 236 (371)
T PF03081_consen 213 -KSYK--DPALRYIFLLNNYHYILKKL 236 (371)
T ss_dssp -CCHC--THHHHHHHHHHHHHHHHCCC
T ss_pred -hccc--cHHHHHHHHHHHHHHHHHHh
Confidence 1111 11225677999999997544
No 22
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=85.35 E-value=88 Score=37.14 Aligned_cols=182 Identities=11% Similarity=0.043 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCCcHHH
Q 007221 164 IDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAH 241 (612)
Q Consensus 164 feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~ 241 (612)
..+|..++.+...+.......+ .+...+.+|......+...|.+++... .-.....++++..|..++.+..+.
T Consensus 74 ~~~~A~il~~L~~ls~~~~~~~-----~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i 148 (710)
T PF07393_consen 74 PEEAAKILRNLLRLSKELSDIP-----GFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCI 148 (710)
T ss_pred hHHHHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3677777777777776663222 467788889988899999999888654 233669999999999999999999
Q ss_pred HHHHHHHHHHHH-Hhccc---cc--------ccccccccchHHhhHHHHHHHHHHHHH----HHHHhcCCCCcchhhHHH
Q 007221 242 SLLLNAHYQRYQ-YSMQS---LR--------PSSTSYGGAYTAALSQLVFSAIAQAAC----DSLAIFGKETAYTSELVM 305 (612)
Q Consensus 242 ~lfL~~rs~~L~-~~l~~---l~--------~~gs~~~~~YI~~Ls~~fFs~I~~t~~----~f~~~F~d~~~~~S~LV~ 305 (612)
+.|...|.-.+. ..+.. +. ..++..+...... -..||..|..++. .-..+|++.......|+.
T Consensus 149 ~~fi~k~~~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~-l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fie 227 (710)
T PF07393_consen 149 DFFINKHEFFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEES-LDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIE 227 (710)
T ss_pred HHHHHhChhhhhhhhhccccccchhHHHHhccCcccccccchHH-HHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 999998866652 12211 00 0011111122222 2446666666555 466889875433444443
Q ss_pred HHHH-HHHHHHHHHhHHhcCcccccCchHHHHHHHHHHHHhhhhhhhc
Q 007221 306 WATR-QTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEAR 352 (612)
Q Consensus 306 Wa~~-eie~f~~l~krqv~~~~~a~~~l~~~~ecv~~~~~~c~~L~~v 352 (612)
-+-+ -+..|+..+=......+. ..=++.....-..+..-++.|.+.
T Consensus 228 rvf~~~I~~~i~~lL~~a~~~s~-~~YLr~l~~~y~~t~~lv~~L~~~ 274 (710)
T PF07393_consen 228 RVFEQVIQEYIESLLEEASSIST-LAYLRTLHGLYSQTKKLVDDLKEF 274 (710)
T ss_pred HHHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333 233333332222211100 001344444444555556777776
No 23
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.85 E-value=2.2e+02 Score=33.98 Aligned_cols=134 Identities=17% Similarity=0.203 Sum_probs=85.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhc-
Q 007221 40 YVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHI- 118 (612)
Q Consensus 40 Yv~~~l~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~~- 118 (612)
++++.++.+ +-...-.+|....+.-+.+.++..=.||+.||.+-+|+.++.++..+|++.++..-.-++.....+.+
T Consensus 36 ~lRs~~d~~--~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~ 113 (800)
T KOG2176|consen 36 TLRSVYDGN--QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVK 113 (800)
T ss_pred HHHHHHccC--CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344444222 44445556666777788889999999999999999999999999999999998766555554332220
Q ss_pred -ccccccCCCCcccccccccC-CCCCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 007221 119 -DSLKGSESFASKNDLLNLEN-KEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAE 180 (612)
Q Consensus 119 -~sl~~~~d~~~~~~~~~~~~-~~~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~ 180 (612)
..+...+... .+... ....+.-=-+.++--.+.-.+.+++|=.|+..++..++..-+
T Consensus 114 ~e~lv~~r~~~-----rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL~ 172 (800)
T KOG2176|consen 114 KEDLVRCRTQS-----RNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYLP 172 (800)
T ss_pred HHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 0000000000 00000 001112112667777888889999999999999998887643
No 24
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=69.34 E-value=62 Score=37.06 Aligned_cols=253 Identities=15% Similarity=0.097 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhcccccc--cccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH
Q 007221 239 RAHSLLLNAHYQRYQYSMQSLRP--SSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAH 316 (612)
Q Consensus 239 ~A~~lfL~~rs~~L~~~l~~l~~--~gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~~~~~S~LV~Wa~~eie~f~~ 316 (612)
.=++.|++.=...++.++.+... .+......++..+. .++..|..+...-..|||..-....-++.|--..+..+..
T Consensus 77 ~~r~~~~~~l~~sv~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~DL~~v~~~~~~cfPp~~~I~~~y~~~YH~~l~~~l~ 155 (566)
T PF06046_consen 77 NWRQKFFEALRESVEERFEQAEEREENKSWLARHLEALR-WVLEDLQVVKDDVVPCFPPEYDIFNTYVSMYHNALSDHLQ 155 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHH-HHHHHHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 33566666666666666663222 22222235788888 9999999999999999997433334555555555555554
Q ss_pred HHhHHhcCcccccCchHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHH------hc
Q 007221 317 LVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPS-VEQALDANLKRIEESTAAMA------AA 389 (612)
Q Consensus 317 l~krqv~~~~~a~~~l~~~~ecv~~~~~~c~~L~~vGLdl~~lL~~lL~p~-ve~al~~~~~~i~e~i~~~~------~~ 389 (612)
-+. .+...+..+-.+..- .-.|-..|...|+...-.|.++|-+. +++.++.|..+++..++.-. ..
T Consensus 156 ~l~----~~~l~~~~ll~ll~W---~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~ 228 (566)
T PF06046_consen 156 ELI----SPDLEANDLLSLLSW---VNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEV 228 (566)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHc----cCCCCHHHHhhheec---hhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 431 121111222222222 33455588888877544455444444 46666788888776655422 24
Q ss_pred CCccccCCCCCCccccccccccccchhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHhhCCCChhhh
Q 007221 390 DDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEE 469 (612)
Q Consensus 390 d~W~~~~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~y~~~l~~al~~~~~~~ 469 (612)
++|.-..+|.. +. ...--|+..+-+..|+.+-++-+..=....+..-+++.+...+..|.+.+...+.....+-
T Consensus 229 ~~w~~~~~Pe~----~~--dg~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 302 (566)
T PF06046_consen 229 KDWSEEKEPEE----DE--DGYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQEFKEEHFKDR 302 (566)
T ss_dssp HHHHC-S--EE-----T--TS-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCc----CC--CCCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45776444431 11 1234566778888888888777733333333334445555566677666665543111110
Q ss_pred hcc-cCCCcccccccccHHHHHHHHhhHHHHHHhhHHHHhhhh
Q 007221 470 ANF-EGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKV 511 (612)
Q Consensus 470 ~~~-~~~~~~~~~~a~t~~qq~~ll~Na~~l~d~llp~~~~~~ 511 (612)
... +..+. .-...--+|++.|+....+ .+.....++
T Consensus 303 ~~~~~~~~~-----~~~~eyliA~~N~~~~~~~-~~~~l~~~~ 339 (566)
T PF06046_consen 303 SSVKPKENP-----PGYLEYLIAVANNCLRCRD-YVESLEQKF 339 (566)
T ss_dssp HHHHHCC-------S-HHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hcccccccc-----cchHHHHHHHhccHHHHHH-HHHHHHHhc
Confidence 000 00000 1122344678888888876 334444444
No 25
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.68 E-value=2.4e+02 Score=33.11 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcccccccc
Q 007221 220 RGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSS 263 (612)
Q Consensus 220 ~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~l~~l~~~g 263 (612)
..++++..+.-++.-|.+.+.+..|...|...+...+..|..++
T Consensus 191 v~~dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ 234 (623)
T KOG2344|consen 191 VMTDLKAIAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEK 234 (623)
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeee
Confidence 45589999999999999999999999999999999999877655
No 26
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=59.73 E-value=95 Score=32.48 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=47.7
Q ss_pred HHHHHHhHHhcCcccccCchHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 007221 313 AFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADD- 391 (612)
Q Consensus 313 ~f~~l~krqv~~~~~a~~~l~~~~ecv~~~~~~c~~L~~vGLdl~~lL~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~- 391 (612)
.|-.++++++-.-.. +.+..+.+....+...+..+....+.=-|.|...+...+.+.++.......+.|..++.-|.
T Consensus 194 afe~Li~~~i~~l~~--Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~ 271 (295)
T PF01031_consen 194 AFESLIRKQIEKLEE--PALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDMELS 271 (295)
T ss_dssp HHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 366777777632211 12332233333333333333333444346788888888888888999999888988888776
Q ss_pred cccc
Q 007221 392 WVLT 395 (612)
Q Consensus 392 W~~~ 395 (612)
+.-+
T Consensus 272 ~i~T 275 (295)
T PF01031_consen 272 YINT 275 (295)
T ss_dssp S--T
T ss_pred cCCC
Confidence 5444
No 27
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=58.39 E-value=19 Score=34.50 Aligned_cols=64 Identities=27% Similarity=0.357 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007221 49 EKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEG 115 (612)
Q Consensus 49 e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~ 115 (612)
.++.++++.|+.+++++..+- +.-++|.+..+.-+.+.+++.|+.++++..+..+..+......
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~i---S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAI---SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS----TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666766666444431 5566999999999999999999999999999988877776443
No 28
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.69 E-value=55 Score=34.18 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=34.7
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 007221 35 FDADVYVKSKCSLNEKEIRQLCSYLLDLKRASA------EEMRKSVYANYAAFIR 83 (612)
Q Consensus 35 Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~------sdLq~~VY~NY~~FI~ 83 (612)
=+||+|++.+= .-|--||+++++|.+-.+.+. .+||...|+=...+|.
T Consensus 54 P~PEQYLTPLQ-QKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 54 PNPEQYLTPLQ-QKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred CCHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 48999999874 346678888888775554443 4788888877777775
No 29
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=53.30 E-value=3.4e+02 Score=29.73 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCcc
Q 007221 51 EIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASK 130 (612)
Q Consensus 51 ~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~~~sl~~~~d~~~~ 130 (612)
+++.++.++. .....+++|+..-+|-..|-....|+..+|.+.....+.+++....+..++.+
T Consensus 64 ~l~a~~~q~~--~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is~~--------------- 126 (391)
T COG2959 64 ELQALQQQLK--ALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATISGS--------------- 126 (391)
T ss_pred HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccC---------------
Confidence 4444444444 23467789999999999999999999999999999999999988888877421
Q ss_pred cccccccCCCCCchhhHhhhhhhHH-----HHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHH
Q 007221 131 NDLLNLENKEPSDLEKWSVEFPDLL-----DVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (612)
Q Consensus 131 ~~~~~~~~~~~~~~l~wl~elpdeL-----Dv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~ 201 (612)
+.-+|+..--|-| ..+...++.+-||.+++.+...|....+. .+..++.+|..
T Consensus 127 ------------~~~dWllaEad~Ll~lA~rkL~l~~DV~TAv~lLk~aD~~La~~NdP------~l~~~R~Aia~ 184 (391)
T COG2959 127 ------------DRKDWLLAEADFLLKLAGRKLVLDQDVTTAVALLKSADARLAAMNDP------SLIAVRRAIAN 184 (391)
T ss_pred ------------ChhhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhccCc------hHHHHHHHHHH
Confidence 0124554433332 35566899999999999999999887553 35555555544
No 30
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=53.01 E-value=1e+02 Score=32.99 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccccccccc------ccccchHHhhH
Q 007221 204 QKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSST------SYGGAYTAALS 275 (612)
Q Consensus 204 ~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~l~~l~~~gs------~~~~~YI~~Ls 275 (612)
+.|...+.+.+... .-...++.+...++.-||..+.+.+.|-+.-...|....|.+..+.. ..+..|+..++
T Consensus 6 ~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic~~Ia~~ar~~~~~~~~~~~~~~~~~~~a~~lt 85 (324)
T smart00762 6 ETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICDIIADKARSLLNELAGASDDTRAAVFYADTLT 85 (324)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHHHHHHHHHHHHhhccccccccccccchHHHHHH
Confidence 34444444444332 34467999999999999999999999988777767666555443221 13567888887
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007221 276 QLVFSAIAQAACDSLAI 292 (612)
Q Consensus 276 ~~fFs~I~~t~~~f~~~ 292 (612)
.+ |-.|+.+++....+
T Consensus 86 ~L-fe~ia~ii~~h~~~ 101 (324)
T smart00762 86 HL-FENVATIIEQHQPV 101 (324)
T ss_pred HH-HHHHHHHHHhccHH
Confidence 76 78888888776644
No 31
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=49.81 E-value=4.4e+02 Score=30.04 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=58.5
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007221 37 ADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGV 116 (612)
Q Consensus 37 ~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v 116 (612)
.+.|+++ .+++.++..++.... ..=+.|......-.+.-=.+|.||..|..+=.+|...|...+.....|..-+
T Consensus 6 i~dy~~e-----~~~~~~Lh~~i~~cd-~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i 79 (508)
T PF04129_consen 6 IQDYLKE-----SENFADLHNQIQECD-SILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFI 79 (508)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566665 457778888887655 5556788888777778888999999999999999999999888888876655
Q ss_pred h
Q 007221 117 H 117 (612)
Q Consensus 117 ~ 117 (612)
.
T Consensus 80 ~ 80 (508)
T PF04129_consen 80 D 80 (508)
T ss_pred H
Confidence 3
No 32
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=47.62 E-value=2.4e+02 Score=30.19 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcccccccc------cccccchHHhhH
Q 007221 204 QKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSS------TSYGGAYTAALS 275 (612)
Q Consensus 204 ~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~l~~l~~~g------s~~~~~YI~~Ls 275 (612)
..|...+.+.+... .-...++.+...+..-||..+.+.+.|-+.=...|....+..-... +..++.|...|.
T Consensus 6 ~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~~~~~~~~~~~~~~~lt 85 (331)
T PF08318_consen 6 ESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATSGSSDSRSPVFYADALT 85 (331)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHH
Confidence 34455555444332 3446799999999999999999999998876666665555433211 224456666665
Q ss_pred HHHHHHHHHHHHH----HHHhcCCCCcchhhHHHHHHHHHHHHHHH
Q 007221 276 QLVFSAIAQAACD----SLAIFGKETAYTSELVMWATRQTEAFAHL 317 (612)
Q Consensus 276 ~~fFs~I~~t~~~----f~~~F~d~~~~~S~LV~Wa~~eie~f~~l 317 (612)
. .|-.|+.++++ -...||. .+...++.=.-.|.+..+..
T Consensus 86 ~-LFe~ia~ii~~h~~lI~~~yG~--~~~~~vi~~Lq~E~D~q~~~ 128 (331)
T PF08318_consen 86 K-LFEHIATIIEQHQPLIEKYYGP--GYMVYVIEKLQKECDLQAGI 128 (331)
T ss_pred H-HHHHHHHHHHHccHHHHHHcCC--cHHHHHHHHHHHHHHHHHHH
Confidence 4 35666666666 3344443 23333444444444443333
No 33
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=46.89 E-value=1.4e+02 Score=28.50 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=8.2
Q ss_pred HHHHHHHHHH
Q 007221 75 YANYAAFIRT 84 (612)
Q Consensus 75 Y~NY~~FI~a 84 (612)
+.||+.||..
T Consensus 66 ~~nyq~fI~~ 75 (148)
T COG2882 66 WQNYQQFISQ 75 (148)
T ss_pred HHHHHHHHHH
Confidence 4699999976
No 34
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=45.23 E-value=6.4e+02 Score=30.56 Aligned_cols=197 Identities=17% Similarity=0.195 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCcccccccccCCCCCchhhHhhhh
Q 007221 72 KSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEF 151 (612)
Q Consensus 72 ~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~~~sl~~~~d~~~~~~~~~~~~~~~~~~l~wl~el 151 (612)
++=-+||.+|-.+-+-.+.|+--+.+...++.+|+.+++.+...+- . . +++. + ..-+
T Consensus 349 kldNQemkafKGiedRf~aLd~miaSC~rlvnEqKeLahgflAn~k-----e--a----ekik-D-----------an~L 405 (1424)
T KOG4572|consen 349 KLDNQEMKAFKGIEDRFSALDFMIASCERLVNEQKELAHGFLANIK-----E--A----EKIK-D-----------ANKL 405 (1424)
T ss_pred hhcchhhHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----h--c----cccc-c-----------cccC
Confidence 3344799999999999999999999999999999999999855442 0 0 0000 1 1112
Q ss_pred hhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 007221 152 PDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISAL 231 (612)
Q Consensus 152 pdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s~~~~elr~aV~lL 231 (612)
| |+|. ++++.++--+.+. ..+..|+.+|++-++.++.-|.-.+.-- ++..|
T Consensus 406 P---dic~------------eHan~lliifeN~-----refldikqkcdqaKQEiakNLhtRlk~c---------cfqml 456 (1424)
T KOG4572|consen 406 P---DICE------------EHANCLLIIFENF-----REFLDIKQKCDQAKQEIAKNLHTRLKGC---------CFQML 456 (1424)
T ss_pred C---hHHH------------HHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHhhhhhh---------heeeh
Confidence 2 2333 2222223222221 1467799999999999999888766332 12223
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Q 007221 232 KKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQT 311 (612)
Q Consensus 232 ~rLG~~~~A~~lfL~~rs~~L~~~l~~l~~~gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~~~~~S~LV~Wa~~ei 311 (612)
.++..+..- ...|+.....++.++.-+..-.+ -|..|--.++.++-.-+. ...|..--++-......|..=-..--
T Consensus 457 ~adqdgek~-~allel~ieale~hmdiieaird-aP~lYclaVsEiVRRklf--ike~eEWaga~skd~aqf~eaEekkR 532 (1424)
T KOG4572|consen 457 DADQDGEKD-IALLELKIEALEIHMDIIEAIRD-APILYCLAVSEIVRRKLF--IKELEEWAGAHSKDCAQFSEAEEKKR 532 (1424)
T ss_pred hhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhHhhhhHHHHHH
Confidence 332222221 22344445555554444321112 246777777766654433 12232222211111122333233345
Q ss_pred HHHHHHHhHHhcC
Q 007221 312 EAFAHLVKRHALA 324 (612)
Q Consensus 312 e~f~~l~krqv~~ 324 (612)
+.|...|++|++.
T Consensus 533 EqfGk~fkKhFLh 545 (1424)
T KOG4572|consen 533 EQFGKKFKKHFLH 545 (1424)
T ss_pred HHHHHHHHHHHHH
Confidence 6788888888764
No 35
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.91 E-value=1.2e+02 Score=25.47 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=31.7
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHcCC
Q 007221 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTII----DRRQKLADQLAEAACQP 217 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~----~r~~~L~~~L~~~l~~~ 217 (612)
.++|++|..+|..+=.++..-+ ++..-..|+.|+. +...+ ++.|...+..|
T Consensus 19 ~gny~eA~~lY~~ale~~~~ek-----n~~~k~~i~~K~~~~a~~yl~R-AE~Lk~~l~~~ 73 (75)
T cd02680 19 KGNAEEAIELYTEAVELCINTS-----NETMDQALQTKLKQLARQALDR-AEALKESMSKA 73 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHhc-----ChhhHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 6899999999998877776532 3334566777775 22222 45555555443
No 36
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=40.26 E-value=6.7e+02 Score=29.39 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHh-ccccccccc------------ccccchHHhhHHHHHHHHHHHH
Q 007221 221 GAELRAAISALKK-LGDGPRAHSLLLNAHYQRYQYS-MQSLRPSST------------SYGGAYTAALSQLVFSAIAQAA 286 (612)
Q Consensus 221 ~~elr~aV~lL~r-LG~~~~A~~lfL~~rs~~L~~~-l~~l~~~gs------------~~~~~YI~~Ls~~fFs~I~~t~ 286 (612)
...+++|+..|.. ..-.....+.|-.+|++.+-.. +.++...|. -||..||+.+=--+.+.+..=.
T Consensus 190 ~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E~ 269 (618)
T PF06419_consen 190 SPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASER 269 (618)
T ss_pred chHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhccChHHHHHHHHHHHHHHhhhHH
Confidence 5688889888754 2223557899999999988777 555543332 2789999999999999999888
Q ss_pred HHHHHhcCCC
Q 007221 287 CDSLAIFGKE 296 (612)
Q Consensus 287 ~~f~~~F~d~ 296 (612)
+-...+|...
T Consensus 270 E~l~~Lf~~~ 279 (618)
T PF06419_consen 270 EFLESLFKFD 279 (618)
T ss_pred HHHHHHhccc
Confidence 8888999753
No 37
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=36.57 E-value=2.8e+02 Score=28.79 Aligned_cols=125 Identities=23% Similarity=0.304 Sum_probs=78.3
Q ss_pred cchHHhhHHHHHHHHHHHHHHHHHhc-CCCC-cchhhHHHHHHHHHHHHHHHHhHHhcCcccccCch----HHHHHHH--
Q 007221 268 GAYTAALSQLVFSAIAQAACDSLAIF-GKET-AYTSELVMWATRQTEAFAHLVKRHALASSAAAGGL----RAAAECV-- 339 (612)
Q Consensus 268 ~~YI~~Ls~~fFs~I~~t~~~f~~~F-~d~~-~~~S~LV~Wa~~eie~f~~l~krqv~~~~~a~~~l----~~~~ecv-- 339 (612)
...+..++.+=|+.|-.+..- ..-| ++-| .+...++..|.+|...|.-+.+|- -.-...-|++ ..+.-|.
T Consensus 68 ~~llHaiAhIE~~AIdLa~Da-~~RF~~~lP~~f~~D~~~va~dEarHf~ll~~rL-~~lG~~yGd~P~h~gLw~~~~~t 145 (253)
T PF04305_consen 68 AALLHAIAHIELNAIDLALDA-IYRFHPNLPREFYDDWLRVADDEARHFRLLRERL-EELGSDYGDLPAHDGLWEAAEQT 145 (253)
T ss_pred HHHHHHhcchHHHHHHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCcchhhHHHHHHHHh
Confidence 456667777777777765543 3345 4433 366888899999998887766652 1111101222 1112221
Q ss_pred ------HHHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhcCCcccc
Q 007221 340 ------QIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRI-EESTAAMAAADDWVLT 395 (612)
Q Consensus 340 ------~~~~~~c~~L~~vGLdl~~lL~~lL~p~ve~al~~~~~~i-~e~i~~~~~~d~W~~~ 395 (612)
..|.-|. .|+..|||..+-+..-|+..=-.....-++.| .|+|.|...-.+|-..
T Consensus 146 ~~dl~~R~A~vp~-~~EArGLD~~p~~~~k~~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~ 207 (253)
T PF04305_consen 146 AHDLLARMALVPR-VLEARGLDVTPFIIEKFRSAGDEESAAILEIILRDEIGHVAIGNRWFRY 207 (253)
T ss_pred ccCHHHHHHHHHH-HHHhhCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1223333 58899999999998888865444445555555 8999999999999866
No 38
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=35.89 E-value=1e+02 Score=27.13 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHhhCCCChhhhhcccCCCcccccccccHHHHHHHHhhHH
Q 007221 420 FNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANAS 497 (612)
Q Consensus 420 F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~~~~a~t~~qq~~ll~Na~ 497 (612)
++..+.+-+.++.++++.+ .+-+.|++..+.+- ++++.+..|+ |..||.++|.|+-
T Consensus 18 lydAF~Q~l~~LP~la~S~---~~KD~I~q~m~~F~---------------dp~~G~pAF~----s~~QQ~~mlq~~l 73 (120)
T PRK15321 18 LYDAFYQRLLALPESASSE---TLKDSIYQEMNAFK---------------DPNSGDSAFV----SFEQQTAMLQNML 73 (120)
T ss_pred HHHHHHHHHHhCCcccCcH---HHHHHHHHHHHHhC---------------CCCCCCcccc----cHHHHHHHHHHHH
Confidence 3344444455666666544 22266677666661 2233334554 6889999998864
No 39
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=34.96 E-value=68 Score=26.86 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCcHH---HHHH-HHH
Q 007221 198 TIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA---HSLL-LNA 247 (612)
Q Consensus 198 kl~~r~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A---~~lf-L~~ 247 (612)
++.+....|.+-|.+-+....++..|-..++.+|.++|+..+. ++.| |..
T Consensus 3 R~~~i~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~~~E~~Ll~DvlGle~ 56 (74)
T PF04444_consen 3 RLKEIMARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQRNEFILLSDVLGLEH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHTTHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCchhhhhhhhccch
Confidence 4556666677777777777788999999999999999885553 6666 655
No 40
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.51 E-value=1.9e+02 Score=24.33 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=27.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhh--cccCCCCHHHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEA--KQTKTLDPAMLISLENTIIDR 202 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~--~~~~~~~~~~~~~i~~kl~~r 202 (612)
.++|++|+.+|.++=.++... ...+ ++.....|..++.+-
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~~~~~~~~--n~~~k~~ir~K~~eY 60 (76)
T cd02681 19 EGRYSEAVFYYKEAAQLLIYAEMAGTL--NDSHLKTIQEKSNEY 60 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHH
Confidence 799999999999998888663 2222 333456667776653
No 41
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=33.06 E-value=7.6e+02 Score=27.87 Aligned_cols=213 Identities=14% Similarity=0.168 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHhc-------CCC--CcchhhHHHHHHHHHHHHHHHHhHHhcCcccccCchHHHHHHHHHHHHhh
Q 007221 276 QLVFSAIAQAACDSLAIF-------GKE--TAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHC 346 (612)
Q Consensus 276 ~~fFs~I~~t~~~f~~~F-------~d~--~~~~S~LV~Wa~~eie~f~~l~krqv~~~~~a~~~l~~~~ecv~~~~~~c 346 (612)
.-||+.|....+++...+ -+. ..+.+....|++..+.-...-+...+.... .+-+.++..|.-++..=
T Consensus 31 Ew~f~~i~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl~~~l~~~~---~~~~~l~HlI~e~~~FD 107 (494)
T PF04437_consen 31 EWYFTFILKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKLRSDLPELL---DDPSLLSHLIDEILSFD 107 (494)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHHHHHH--TT---S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHHHHHHHhhc---cChhHHHHHHHHHHHHH
Confidence 456676666666663222 122 124467778888888777777777764332 35567777777666666
Q ss_pred hhhhhc-CCCc-------hHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCccccccccccccchhH
Q 007221 347 SLLEAR-GLAL-------CPVL-IKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSA 417 (612)
Q Consensus 347 ~~L~~v-GLdl-------~~lL-~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~~~~~~~~~LT~S~ 417 (612)
..|++. |.+- .-+. ...+..=++--.+...+|..+ | ..++|.|...+.. ..+.....+.|.||
T Consensus 108 ~~L~~~~~y~~d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~-i--~~s~~aw~~~~~~-----~~~~~~~~k~t~~A 179 (494)
T PF04437_consen 108 KELRSLYGYPGDWQGSTLDVLCQPDWFDRWLNAEKEFALERFDE-I--ISSPDAWQIDYDD-----VEADSDELKPTKSA 179 (494)
T ss_dssp HHHHHTS---S------CGGGS-HHHHHHHHHHHHHHHHHHHH-----------------------HTTSSGGGG-GGHH
T ss_pred HHHHHHcCCCCccchhHHHHhcchHHHHHHHHHHHHHHHHHHhh-h--cccchhhhhhhcc-----ccCCchhhcchHHH
Confidence 566542 3332 2111 222222222223333344443 2 3467889876421 00112456899999
Q ss_pred HHHHHHHHHHHHhhcccccccchHHHH-HHHHHHHHHHHHHHHhhCCCChhhhhcccCCCcccccccccHHHHHH-HHhh
Q 007221 418 HRFNLMVQDFFEDVGPLLSMQLGGKML-EGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIA-LLAN 495 (612)
Q Consensus 418 ~~F~~~v~~f~ed~~~L~~~~L~~~~~-~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~~~~a~t~~qq~~-ll~N 495 (612)
.+|++++..+.+.+.+|.+....--.+ +.=..+++.|.+.|...+.+-.... +. ... .-....-++++ ++++
T Consensus 180 ~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~-s~---~~~--~~~~~~l~~l~~~lns 253 (494)
T PF04437_consen 180 ERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESST-ST---LAS--LSGDSGLERLCKILNS 253 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT--------SC--EEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc---hhh--ccCCchHHHHHHHHHH
Confidence 999999999999999998776444333 2223344555444444321100000 00 000 00122345556 8999
Q ss_pred HHHHHHhhHH
Q 007221 496 ASLLADELLP 505 (612)
Q Consensus 496 a~~l~d~llp 505 (612)
|.||...|--
T Consensus 254 a~yi~~~L~e 263 (494)
T PF04437_consen 254 ANYIENVLRE 263 (494)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876643
No 42
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=31.26 E-value=2.6e+02 Score=22.93 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=33.2
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l 214 (612)
.++|++|+.+|..|=..+..+-.... ++.....++.++.+-... ++.|...+
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~~~k~~eyl~R-aE~LK~~l 70 (75)
T cd02678 19 AGNYEEALRLYQHALEYFMHALKYEK-NPKSKESIRAKCTEYLDR-AEKLKEYL 70 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 78999999999999888876543221 344456667776655444 34444333
No 43
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=30.71 E-value=9.9e+02 Score=28.49 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=77.9
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCccccccccccccchhHHHHHHHHHHHHHhhcccc-
Q 007221 357 CPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLL- 435 (612)
Q Consensus 357 ~~lL~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~- 435 (612)
-|-++.++.+-|.+=++...+++.+-+.+.+..|+|.|... .. +=+.|.+-..+++.+.++....|-
T Consensus 510 Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~--~e----------~hs~SvVEvfri~~eTvd~ff~L~~ 577 (677)
T PF05664_consen 510 PYEVESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSK--EE----------RHSPSVVEVFRIFNETVDQFFQLPW 577 (677)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCC--CC----------CCcchHHHHHHHHHHHHHHHHcCCC
Confidence 36788999999999999999999999999999999998852 12 334577888888888888888773
Q ss_pred --cccchHHHHHHHHHHHHHHHHHHHhhCC
Q 007221 436 --SMQLGGKMLEGLFQVFNSYVSMLIKALP 463 (612)
Q Consensus 436 --~~~L~~~~~~~l~~lf~~y~~~l~~al~ 463 (612)
.+.+...+.++|...|..|++.+...+.
T Consensus 578 ~~~~~~l~~L~~gld~~lq~Y~~~v~~~~g 607 (677)
T PF05664_consen 578 PMHADFLQALSKGLDKALQRYCEKVEQSCG 607 (677)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3447888999999999999999866553
No 44
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=30.57 E-value=4.7e+02 Score=26.83 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=46.9
Q ss_pred hHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCC-CCHHHHHHHHHHHHHHHHHHHH
Q 007221 146 KWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKT-LDPAMLISLENTIIDRRQKLAD 208 (612)
Q Consensus 146 ~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~-~~~~~~~~i~~kl~~r~~~L~~ 208 (612)
+-|..+.|++--+..+++|++|...++...+.+......+. .+...+..|...+.+-+..++.
T Consensus 3 ~eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~~ 66 (232)
T PF09577_consen 3 KELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALTS 66 (232)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHc
Confidence 44778889999999999999999999998888866544321 4555677777777766555553
No 45
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=30.03 E-value=3e+02 Score=22.37 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=30.6
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQK 205 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~ 205 (612)
.++|++|+.+|..|-..+...-... .++.....+..++.+-...
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~~~~~~~-~~~~~~~~~~~k~~eyl~r 64 (77)
T smart00745 21 AGDYEEALELYKKAIEYLLEGIKVE-SDSKRREAVKAKAAEYLDR 64 (77)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHH
Confidence 6899999999999998887754332 1344456666666655444
No 46
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=29.78 E-value=5.9e+02 Score=26.23 Aligned_cols=245 Identities=13% Similarity=0.078 Sum_probs=116.6
Q ss_pred HHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCC
Q 007221 158 LLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDG 237 (612)
Q Consensus 158 ~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~ 237 (612)
..++++++-|..++.|++..+... +|.....+...+-+.-..+..+ . .+......=+.++..++-+.++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~------~~~~~~~La~~~yn~G~~l~~~---~-~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL------DPDMAEELARVCYNIGKSLLSK---K-DKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC------CcHHHHHHHHHHHHHHHHHHHc---C-CChHHHHHHHHHHHHHHHhhhhc
Confidence 356999999999999999888511 2223344444444333322221 0 01111122466667776554443
Q ss_pred cHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCCCcch-hhHHHHHH-HHHHHHH
Q 007221 238 PRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYT-SELVMWAT-RQTEAFA 315 (612)
Q Consensus 238 ~~A~~lfL~~rs~~L~~~l~~l~~~gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d~~~~~-S~LV~Wa~-~eie~f~ 315 (612)
.+...-+..-|-..++...+.....++ ..|+.+ ...+++.-..-|++.+... -.+-.|.. .-.+.+.
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~---~~~~~k--------a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDT---YESVEK--------ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCC---hHHHHH--------HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH
Confidence 333333333333333333333222122 133332 2333344467778765422 33334444 2244455
Q ss_pred HHHhHHhcCcccccCchHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 007221 316 HLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLT 395 (612)
Q Consensus 316 ~l~krqv~~~~~a~~~l~~~~ecv~~~~~~c~~L~~vGLdl~~lL~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~ 395 (612)
+.+.+-|.+......++..+..|+.....++..+ .+-.+.++|...+.|.-.+ .+...+..++ |...
T Consensus 142 ~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~--a~~~ld~~l~~r~~~~~~~-------~~e~~vl~~~----~~~~ 208 (278)
T PF08631_consen 142 EILMRMIRSVDHSESNFDSILHHIKQLAEKSPEL--AAFCLDYLLLNRFKSSEDQ-------WLEKLVLTRV----LLTT 208 (278)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhhCcHH--HHHHHHHHHHHHhCCChhH-------HHHHHHHHHH----HHHc
Confidence 5555555443322247888888888778777643 3333344444444443111 1222222222 4323
Q ss_pred CCCCCCccccccccccccchhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 007221 396 YPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVF 451 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf 451 (612)
..+.. + ...=.+.+.+|++.+......+|.......+.-|+
T Consensus 209 ~~~~~-------------~--~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LL 249 (278)
T PF08631_consen 209 QSKDL-------------S--SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLL 249 (278)
T ss_pred CCccc-------------c--chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 21100 0 01113456677777777777777777666665543
No 47
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=29.76 E-value=62 Score=22.44 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=15.9
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 007221 156 DVLLAERRIDEALTALDEGE 175 (612)
Q Consensus 156 Dv~IAer~feeAV~ll~k~~ 175 (612)
+++...++|++|+++++++=
T Consensus 7 ~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 7 RIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 46778999999999998853
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.93 E-value=8.3e+02 Score=31.96 Aligned_cols=228 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhhhcccCCCCCChHHHHHHhc-CCC--------------------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 007221 24 EEGLNLFKSDKFDADVYVKSKC-SLN--------------------EKEIRQLCSYLLDLKR-----ASAEEMRKSVYAN 77 (612)
Q Consensus 24 ~~~~~~f~~~~Fd~e~Yv~~~l-~~~--------------------e~~L~~~~~~L~~lk~-----~~~sdLq~~VY~N 77 (612)
+++...|++..|+++..-+.++ ..+ |+-|-.+..+...... +-+..--+..|+.
T Consensus 739 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~s~~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 818 (1486)
T PRK04863 739 EGDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQA 818 (1486)
T ss_pred cCChhHHhccCccHHHhcCCeeeeecchhhhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHHHHHh-----------------HhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------------------
Q 007221 78 YAAFIRTS-----------------KEISDLEGELSSIRNLLSTQATLIHGLAEGVH----------------------- 117 (612)
Q Consensus 78 Y~~FI~aS-----------------kEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~----------------------- 117 (612)
.++||... ..+.+++.++.++..--..++..+..+...+.
T Consensus 819 ~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 898 (1486)
T PRK04863 819 FSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEE 898 (1486)
T ss_pred HHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHH
Q ss_pred ----------------------------cccccccCCCCcccccccccCCCCCchhhHhhhhhhHHHHHHHccCHHHHHH
Q 007221 118 ----------------------------IDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALT 169 (612)
Q Consensus 118 ----------------------------~~sl~~~~d~~~~~~~~~~~~~~~~~~l~wl~elpdeLDv~IAer~feeAV~ 169 (612)
+..++.....-..-......-....+.++--.....+|.---++=.|++|+.
T Consensus 899 ~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 978 (1486)
T PRK04863 899 IREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAE 978 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHh
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCcH
Q 007221 170 ALDEGEHLAAEAKQTKTLDPAMLISL----------ENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPR 239 (612)
Q Consensus 170 ll~k~~~~L~~~~~~~~~~~~~~~~i----------~~kl~~r~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~ 239 (612)
++.+....-..+.. .+..+ ..+..+..+.....+...-++-......+.+.-.-|..||.+-.
T Consensus 979 ~l~~~~~~~~~Le~-------~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~ 1051 (1486)
T PRK04863 979 MLAKNSDLNEKLRQ-------RLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPAD 1051 (1486)
T ss_pred HhhcchhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q ss_pred H-HHHHHHHHHHHHHHhccc
Q 007221 240 A-HSLLLNAHYQRYQYSMQS 258 (612)
Q Consensus 240 A-~~lfL~~rs~~L~~~l~~ 258 (612)
+ .+.-+..+...|...++.
T Consensus 1052 ~~~~~~~~~~~~~l~~~l~~ 1071 (1486)
T PRK04863 1052 SGAEERARARRDELHARLSA 1071 (1486)
T ss_pred ccHHHHHHHhHHHHHHHHHH
No 49
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=28.52 E-value=2e+02 Score=23.00 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=26.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~ 201 (612)
.++|++|+++|.+|-..|...-.... ++..-..++.++.+
T Consensus 18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~-~~~~~~~l~~k~~~ 57 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYLMQALKSES-NPERRQALRQKMKE 57 (69)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHST-THHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 79999999999999888866533221 22223445555553
No 50
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.78 E-value=3.7e+02 Score=22.44 Aligned_cols=40 Identities=35% Similarity=0.378 Sum_probs=27.9
Q ss_pred ccCHHHHHHHHHHHHHHHHhhc-ccCCCCHHHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEAK-QTKTLDPAMLISLENTIIDR 202 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~-~~~~~~~~~~~~i~~kl~~r 202 (612)
.++|++|+.+|..+=..+..+- ..| ++.....++.++.+-
T Consensus 19 ~g~y~eAl~~Y~~aie~l~~~lk~e~--d~~~k~~~r~ki~eY 59 (77)
T cd02683 19 EGRFQEALVCYQEGIDLLMQVLKGTK--DEAKKKNLRQKISEY 59 (77)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHH
Confidence 7999999999999988887643 222 343456666666643
No 51
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=25.81 E-value=3.8e+02 Score=22.26 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l 214 (612)
.++|++|+.+|..|=..+..+-... .++.....|+.++.+-..+ ++.|...+
T Consensus 19 ~g~y~eA~~lY~~ale~~~~~~k~e-~~~~~k~~lr~k~~eyl~R-AE~LK~~l 70 (75)
T cd02684 19 RGDAAAALSLYCSALQYFVPALHYE-TDAQRKEALRQKVLQYVSR-AEELKALI 70 (75)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6899999999999988887643221 2454556677777765555 44444443
No 52
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=24.67 E-value=1.2e+03 Score=28.55 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=35.7
Q ss_pred hhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhccc
Q 007221 145 EKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQT 184 (612)
Q Consensus 145 l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~ 184 (612)
.+=|.++.+.+.-+..+++.++|-++++..+.++.++...
T Consensus 537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~ 576 (820)
T PF13779_consen 537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQNA 576 (820)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 3558899999999999999999999999999999987654
No 53
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.41 E-value=1.4e+03 Score=27.45 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCCCCChHHH-HHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHH
Q 007221 31 KSDKFDADVY-VKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQAT 107 (612)
Q Consensus 31 ~~~~Fd~e~Y-v~~~l-~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~ 107 (612)
.++.|.|.-- |.+++ +.+..+|+.++.+|.... .=...|..++-+.=+++=.+..+.+.+...+..|..++...+.
T Consensus 244 ~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve-~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 244 KSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVE-REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred CCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567877654 78888 999999999999998775 5556777888888888999999999998888888655544433
No 54
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=22.09 E-value=4.3e+02 Score=21.41 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=29.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQK 205 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~ 205 (612)
.++|++|+.+|..|-..+..+-... .++.....++.++.+-...
T Consensus 19 ~g~~~~Al~~Y~~a~e~l~~~~~~~-~~~~~k~~l~~k~~~yl~R 62 (75)
T cd02656 19 DGNYEEALELYKEALDYLLQALKAE-KEPKLRKLLRKKVKEYLDR 62 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHH
Confidence 4899999999999988887654322 1344456666666654444
No 55
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=21.27 E-value=4.8e+02 Score=21.68 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhh-cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEA-KQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~-~~~~~~~~~~~~~i~~kl~~r~~~L~~~L~~~l 214 (612)
.++|++|+.+|..|=..+... +..+ ++..-..++.|+.+-...-.+.+...+
T Consensus 19 ~~~y~eA~~~Y~~~i~~~~~~~k~e~--~~~~k~~ir~K~~eYl~RAE~i~~~~l 71 (75)
T cd02677 19 EGDYEAAFEFYRAGVDLLLKGVQGDS--SPERREAVKRKIAEYLKRAEEILRLHL 71 (75)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999998888653 3322 454566777777776655554444444
No 56
>PRK11020 hypothetical protein; Provisional
Probab=21.16 E-value=3.1e+02 Score=24.94 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHH
Q 007221 50 KEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLL 102 (612)
Q Consensus 50 ~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lL 102 (612)
.||+++-..|-.+.+..+.-.++.=-+-|.+| .+||.+|+.++..|++.=
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf---~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQF---EKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 47888888888888877777777767777777 589999999999997643
No 57
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=21.10 E-value=6.9e+02 Score=23.82 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=39.7
Q ss_pred CCCChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHhHhHH
Q 007221 33 DKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVY------------------ANYAAFIRTSKEIS 89 (612)
Q Consensus 33 ~~Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY------------------~NY~~FI~aSkEIs 89 (612)
+.|||=.=|+.++ ..++..|..+.+..+..|++|++ +|...|-.+-+.|.
T Consensus 2 e~~D~I~kvK~Lv-------~~LreSl~~~~k~AA~~l~qn~~~D~g~~~~~~d~~~~RFdK~lEeFysiCDQIE 69 (148)
T PF11568_consen 2 EKLDPISKVKSLV-------GPLRESLSNLMKTAAQNLQQNSLVDNGTRGKSSDEPVPRFDKNLEEFYSICDQIE 69 (148)
T ss_pred CcccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHHHHHHHHHHH
Confidence 4678877788765 67888888888899999999844 67788888888876
No 58
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.62 E-value=1.7e+02 Score=21.17 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=20.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHhh
Q 007221 156 DVLLAERRIDEALTALDEGEHLAAEA 181 (612)
Q Consensus 156 Dv~IAer~feeAV~ll~k~~~~L~~~ 181 (612)
|+.+...+|++|++-+.++=++..++
T Consensus 9 eisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 9 EISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 57788999999999998876665543
No 59
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=20.36 E-value=2.3e+02 Score=23.26 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=28.3
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007221 86 KEISDLEGELSSIRNLLSTQATLIHGLAEGVH 117 (612)
Q Consensus 86 kEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~ 117 (612)
.+|..|+.++..|+..-++.+.-+|+|+++.-
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP 33 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLP 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 47889999999999999999999999988753
No 60
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=20.35 E-value=1.8e+02 Score=24.39 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=30.1
Q ss_pred hhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007221 350 EARGLALCPVLIKLFRPSVEQALDANLKRIEESTA 384 (612)
Q Consensus 350 ~~vGLdl~~lL~~lL~p~ve~al~~~~~~i~e~i~ 384 (612)
...|..+..+...+|||-+++=|+.|+-.+.|.+.
T Consensus 29 ~~~~~TlE~lvremLRPmLkeWLD~nLP~lVErlV 63 (73)
T PF10691_consen 29 PSSGRTLEDLVREMLRPMLKEWLDENLPGLVERLV 63 (73)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34688999999999999999999999988876644
No 61
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=20.26 E-value=1.3e+03 Score=26.29 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=36.0
Q ss_pred cccccchhHHHHHHHHHHHHHhhcc-cccccchHHHHHHHHHHHHHHHHHHHh
Q 007221 409 LQHRLTTSAHRFNLMVQDFFEDVGP-LLSMQLGGKMLEGLFQVFNSYVSMLIK 460 (612)
Q Consensus 409 ~~~~LT~S~~~F~~~v~~f~ed~~~-L~~~~L~~~~~~~l~~lf~~y~~~l~~ 460 (612)
.|..= .-....+..+.+|+.|..+ |..+-....+.+....+..+|+..+++
T Consensus 392 ~W~~~-~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~ 443 (566)
T PF06046_consen 392 KWYSG-EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMK 443 (566)
T ss_dssp GGCTS--HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cCcCc-chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35443 6677888889999999999 554445556666666677899988766
Done!