Query 007221
Match_columns 612
No_of_seqs 170 out of 242
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:16:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 100.0 5.9E-46 2E-50 373.4 22.6 221 141-370 11-233 (235)
2 3swh_A MUNC13-1, protein UNC-1 70.5 37 0.0013 35.2 12.4 120 359-503 6-132 (341)
3 2crb_A Nuclear receptor bindin 63.3 30 0.001 29.1 7.8 46 154-200 21-66 (97)
4 2fzt_A Hypothetical protein TM 51.8 91 0.0031 25.0 8.7 56 148-209 4-59 (79)
5 3vkg_A Dynein heavy chain, cyt 38.5 5E+02 0.017 35.0 17.2 32 151-182 2010-2041(3245)
6 1g6u_A Domain swapped dimer; d 36.8 44 0.0015 23.4 4.0 40 23-67 5-44 (48)
7 2js5_A Uncharacterized protein 29.1 55 0.0019 26.1 3.9 33 85-117 2-34 (71)
8 2cpt_A SKD1 protein, vacuolar 27.7 2E+02 0.0068 24.8 7.8 53 161-213 31-86 (117)
9 1elw_A TPR1-domain of HOP; HOP 27.2 2.1E+02 0.0071 21.8 7.6 88 153-248 9-99 (118)
10 3sjb_C Golgi to ER traffic pro 25.4 97 0.0033 26.0 4.9 71 39-112 10-82 (93)
11 3kpe_A Fusion glycoprotein F0; 25.1 74 0.0025 23.7 3.7 28 90-117 1-28 (51)
12 2v71_A Nuclear distribution pr 24.4 4.5E+02 0.015 24.7 10.4 44 69-112 67-114 (189)
13 2hr2_A Hypothetical protein; a 24.0 1.2E+02 0.0043 27.5 6.0 58 146-207 100-157 (159)
14 2kjg_A Archaeal protein SSO690 23.6 2.1E+02 0.0071 23.7 6.4 60 36-96 5-70 (99)
15 3t98_B Nucleoporin NUP58/NUP45 21.9 3.4E+02 0.012 22.5 8.2 70 37-106 6-85 (93)
16 3csx_A Putative uncharacterize 20.6 89 0.0031 25.5 3.7 33 85-117 14-46 (81)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=100.00 E-value=5.9e-46 Score=373.40 Aligned_cols=221 Identities=19% Similarity=0.236 Sum_probs=199.2
Q ss_pred CCchhhHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 007221 141 PSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTK-TLDPAMLISLENTIIDRRQKLADQLAEAACQPST 219 (612)
Q Consensus 141 ~~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~-~~~~~~~~~i~~kl~~r~~~L~~~L~~~l~~~s~ 219 (612)
..+.++|+.++||+|||+||+|+||+||++++++++.+..++... +.+++....|+.|+++|++.|+++|.+++.+ +.
T Consensus 11 ~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~ 89 (235)
T 2d2s_A 11 TAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SN 89 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CS
T ss_pred cchhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 456799999999999999999999999999999999999876532 2345678999999999999999999999966 77
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCC-CCc
Q 007221 220 RGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGK-ETA 298 (612)
Q Consensus 220 ~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~l~~l~~~gs~~~~~YI~~Ls~~fFs~I~~t~~~f~~~F~d-~~~ 298 (612)
++.+++++|++|+|||++++||++||++|+.+|+++++++..+|+ ++.||.+||.+||+.|++|+++|.++|++ +|.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd--~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~ 167 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDN--PTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAK 167 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCS--HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 899999999999999999999999999999999999999976664 59999999999999999999999999998 778
Q ss_pred chhhHHHHHHHHHHHHHHHHhHHhcCcccccCchHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHH
Q 007221 299 YTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQ 370 (612)
Q Consensus 299 ~~S~LV~Wa~~eie~f~~l~krqv~~~~~a~~~l~~~~ecv~~~~~~c~~L~~vGLdl~~lL~~lL~p~ve~ 370 (612)
|+|+||.||++|++.|+.+|+||+++ . +++. ++||+++++||++|+++||||+|+|+++|+|++++
T Consensus 168 ~~S~lV~Wa~~eve~f~~l~~rqv~~-~---~~l~--~ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~~ 233 (235)
T 2d2s_A 168 ISSILVDWCSDEVDNHFKLIDKQLLN-D---EMLS--PGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK 233 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC-------CC--HHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHccC-C---ccHH--HHHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHhh
Confidence 99999999999999999999999988 2 3666 49999999999999999999999999999999875
No 2
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=70.47 E-value=37 Score=35.15 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=86.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCccccccccccccchhHHHHHHHHHHHHHhhccccccc
Q 007221 359 VLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQ 438 (612)
Q Consensus 359 lL~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~ 438 (612)
-+...|.|.|.+=|+...+++.+-|...+..|+|.|+.+.. ...+=|+|.+-..+++.++++-...|.-|+
T Consensus 6 ~~~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~---------~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD 76 (341)
T 3swh_A 6 EYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTS---------EHALFSCSVVDVFSQLNQSFEIIKKLECPD 76 (341)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS---------SSCCSCTHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc---------cCccccchHHHHHHHHHHHHHHHHHCCCCC
Confidence 34668999999999999999999999999999999985321 123667788888999999999999998777
Q ss_pred ------chHHHHHHHHHHHHHHHHHHHhhCCCChhhhhcccCCCcccccccccHHHHHH-HHhhHHHHHHhh
Q 007221 439 ------LGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIA-LLANASLLADEL 503 (612)
Q Consensus 439 ------L~~~~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~~~~a~t~~qq~~-ll~Na~~l~d~l 503 (612)
+.-.+.+.+++....|.+.+.+-.+....++ + ..+++ ++.|...+...|
T Consensus 77 ~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e----~------------~~~~Cv~lNNie~lR~~L 132 (341)
T 3swh_A 77 PQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKE----K------------EKVPCILMNNTQQLRVQL 132 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT----S------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----c------------ccchhhhcccHHHHHHHH
Confidence 3334566667777789888876655211111 0 12356 778998887555
No 3
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.26 E-value=30 Score=29.10 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=32.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH
Q 007221 154 LLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTII 200 (612)
Q Consensus 154 eLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~ 200 (612)
.=+.++..++||+|+++..++-.+|.+.-+.. .++.+...|+..-+
T Consensus 21 rAe~ll~~gkydeAIech~kAa~yL~eAmklt-qs~qa~~SLqLQrd 66 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTYLSEAMKLT-ESEQAHLSLELQRD 66 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHH
Confidence 34678999999999999999999998754432 24444555444333
No 4
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=51.75 E-value=91 Score=24.97 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred hhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007221 148 SVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQ 209 (612)
Q Consensus 148 l~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~~~ 209 (612)
+.++-..+|.+|.+.+|+.-..++.+-++++..++.. -+..|..+=..|...+.+.
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLlk~L~~e------~l~~i~EkDk~R~~~Ik~~ 59 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKD------KLSEILEKDRKRLEIIEKR 59 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCcHH------HHHHHHHHHHHHHHHHHHH
Confidence 5567778999999999999999999999999855431 3555666655565555544
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.55 E-value=5e+02 Score=34.96 Aligned_cols=32 Identities=19% Similarity=-0.047 Sum_probs=19.9
Q ss_pred hhhHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 007221 151 FPDLLDVLLAERRIDEALTALDEGEHLAAEAK 182 (612)
Q Consensus 151 lpdeLDv~IAer~feeAV~ll~k~~~~L~~~~ 182 (612)
.|-+-.+.-++.+.++|-+.+.+++..++...
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le 2041 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALE 2041 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666677777777777766666554
No 6
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.78 E-value=44 Score=23.45 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=0.0
Q ss_pred hhhhhcccCCCCCChHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 007221 23 IEEGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASA 67 (612)
Q Consensus 23 ~~~~~~~f~~~~Fd~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~~ 67 (612)
+...+..+..++|.||....- +.+++.++.+|..+|..+.
T Consensus 5 lkselqalkkegfspeelaal-----eselqalekklaalksklq 44 (48)
T 1g6u_A 5 LKSELQALKKEGFSPEELAAL-----ESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHTTCSHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHH
No 7
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=29.07 E-value=55 Score=26.11 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=29.5
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007221 85 SKEISDLEGELSSIRNLLSTQATLIHGLAEGVH 117 (612)
Q Consensus 85 SkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~ 117 (612)
|.+|..|+.|+..|+..-++.+.-+++|+++.-
T Consensus 2 tedi~eLkkevkKL~~~A~q~kmdLHDLaEdLP 34 (71)
T 2js5_A 2 SEGAEELKAKLKKLNAQATALKMDLHDLAEDLP 34 (71)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHhccch
Confidence 468899999999999999999999999988753
No 8
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.71 E-value=2e+02 Score=24.84 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=32.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 007221 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTII---DRRQKLADQLAEA 213 (612)
Q Consensus 161 er~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~---~r~~~L~~~L~~~ 213 (612)
.++|++|+.+|..+-.++...-.....++.....|+.++. .|...|...|...
T Consensus 31 ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~ 86 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNK 86 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4999999999999988887653222123333445666655 4444555544433
No 9
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=27.19 E-value=2.1e+02 Score=21.81 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=44.1
Q ss_pred hHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCCCChHHHHHHHH
Q 007221 153 DLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRR---QKLADQLAEAACQPSTRGAELRAAIS 229 (612)
Q Consensus 153 deLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~---~~L~~~L~~~l~~~s~~~~elr~aV~ 229 (612)
..-..+...++|++|+..+.++-..- +. ++..... ...+.... ..-...+...+........-......
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD---PH----NHVLYSN-RSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC---CC----cHHHHHH-HHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34456778999999999998875432 11 1111111 11111111 11111222222111122334444456
Q ss_pred HHHhcCCCcHHHHHHHHHH
Q 007221 230 ALKKLGDGPRAHSLLLNAH 248 (612)
Q Consensus 230 lL~rLG~~~~A~~lfL~~r 248 (612)
.+.++|+.++|...|-+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 7788899999988776543
No 10
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=25.37 E-value=97 Score=25.97 Aligned_cols=71 Identities=13% Similarity=0.238 Sum_probs=47.8
Q ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHHHHHHHh
Q 007221 39 VYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGL 112 (612)
Q Consensus 39 ~Yv~~~l--~~~e~~L~~~~~~L~~lk~~~~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~~~I~~L 112 (612)
.++..++ +....+.+++..++.++++...+ .+.-.+|.++-+.=+-+.+|..|+..+++-|...++.....
T Consensus 10 ~wi~~l~~~s~~a~~~~~lk~E~~~lk~E~~s---tSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~ 82 (93)
T 3sjb_C 10 KWISKFAPGNELSKKYLAKVKERHELKEFNNS---ISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAH 82 (93)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHTT---SCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCcHhHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 34457777888888777644332 34567899999999999999999999999998887765543
No 11
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=25.06 E-value=74 Score=23.70 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007221 90 DLEGELSSIRNLLSTQATLIHGLAEGVH 117 (612)
Q Consensus 90 ~LE~EM~~L~~lLs~q~~~I~~Ls~~v~ 117 (612)
.||+|+..|++-+.+.-..|.+|++|+.
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~ 28 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVS 28 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999988888999988875
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.42 E-value=4.5e+02 Score=24.73 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhHh----HHhHHHHHHHHHHHHHHHHHHHHHh
Q 007221 69 EMRKSVYANYAAFIRTSKE----ISDLEGELSSIRNLLSTQATLIHGL 112 (612)
Q Consensus 69 dLq~~VY~NY~~FI~aSkE----Is~LE~EM~~L~~lLs~q~~~I~~L 112 (612)
.|+.-+=..-.+|-....| |+.|+.|+..|+.-..+.+.-|.+|
T Consensus 67 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 67 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444556666555 8888888888887777777777666
No 13
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=23.97 E-value=1.2e+02 Score=27.55 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=41.9
Q ss_pred hHhhhhhhHHHHHHHccCHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHH
Q 007221 146 KWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLA 207 (612)
Q Consensus 146 ~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~~~~~~~i~~kl~~r~~~L~ 207 (612)
.|+.-+-..=..+...++|++|+..++++-.+-.+-.... . .+..++.++.+|+.+|.
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~---~-~~~~~~~~~~~~~~k~~ 157 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET---P-GKERMMEVAIDRIAQLG 157 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC---T-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH---H-HHHHHHHHHHHHHHHhc
Confidence 4443335555677889999999999999887765543321 1 57888999999888875
No 14
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=23.56 E-value=2.1e+02 Score=23.71 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=39.2
Q ss_pred ChHHHHHH--hc-CCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhHHhHHHHHH
Q 007221 36 DADVYVKS--KC-SLNEKEIRQLCSYLLDLKRASAEEMRK---SVYANYAAFIRTSKEISDLEGELS 96 (612)
Q Consensus 36 d~e~Yv~~--~l-~~~e~~L~~~~~~L~~lk~~~~sdLq~---~VY~NY~~FI~aSkEIs~LE~EM~ 96 (612)
|-+.|++- .- ..+-+++++.-+++...-+.. ...++ -||.||.+|++-.|+.=+|=+++.
T Consensus 5 dqeEFveLrkfKgkvd~~~v~~IL~eiE~~~rks-nni~tS~If~Yanh~~~V~knk~fy~li~~Il 70 (99)
T 2kjg_A 5 EDPEFVKLRQFKGKVNFNLVMQILDEIELDLRGS-DNIKTSIIYVYSSHLDEIRKNKEFYDMIAEIL 70 (99)
T ss_dssp SCHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHS-SCHHHHHHHHHHHTHHHHHHTHHHHHHHHHHH
T ss_pred chHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555542 22 677788888888777544332 22333 379999999999999877755544
No 15
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=21.93 E-value=3.4e+02 Score=22.50 Aligned_cols=70 Identities=9% Similarity=0.213 Sum_probs=50.3
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhHhHHhHHHHHHHHHHHHHHHH
Q 007221 37 ADVYVKSKCSLNEKEIRQLCSYLLDLKRAS----------AEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQA 106 (612)
Q Consensus 37 ~e~Yv~~~l~~~e~~L~~~~~~L~~lk~~~----------~sdLq~~VY~NY~~FI~aSkEIs~LE~EM~~L~~lLs~q~ 106 (612)
|-.|...+...=++.|+.++..+..+.+.+ -.+|...+-+-|..||.-+..+..+-.++..++......+
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~r 85 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYR 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665333566777777666554432 2478888889999999999999999999999987665443
No 16
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=20.62 E-value=89 Score=25.51 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=26.8
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007221 85 SKEISDLEGELSSIRNLLSTQATLIHGLAEGVH 117 (612)
Q Consensus 85 SkEIs~LE~EM~~L~~lLs~q~~~I~~Ls~~v~ 117 (612)
..+|..|+.|+..|+..-++.+.-+|+|+++.-
T Consensus 14 ~~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP 46 (81)
T 3csx_A 14 PEAVADLKKKVRKLNSKAGQMKMDLHDLAEGLP 46 (81)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 467889999999999999999999999998753
Done!