BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007222
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/611 (42%), Positives = 366/611 (59%), Gaps = 46/611 (7%)
Query: 17 SEYVSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRM-LED 75
SEY++ D RR FVSGF GSAG A+IT A +WTDGRYFLQA +++ W LM+M L+D
Sbjct: 40 SEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKD 99
Query: 76 -PAVDVWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRP 134
P + W+ + LP + +GVDP + D ++ + L+ NLVDK+W +RP
Sbjct: 100 TPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRP 159
Query: 135 PVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYC 194
P+ +++ G S +K+ +LR K+ ++T LDE+AWL+N+RG+DV +
Sbjct: 160 ERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHN 219
Query: 195 PVVHAFAIVTTNAAFLYVDKRKVSSEVIS--FLKESGVE------VRDYDAVSSDVVLLQ 246
PV ++AI+ L++D ++ + + L + G+E V Y ++ S++ L
Sbjct: 220 PVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALC 279
Query: 247 SNQLNPPADVQGSDLIWADPNSCSYALYSKLNSD-KVLLQQSPLALAKAIKNPVELDGLK 305
AD+ + +W + SYA+ + D + + +P+ +AKA+KN E +G++
Sbjct: 280 -------ADLSPREKVWVS-DKASYAVSETIPKDHRCCMPYTPICIAKAVKNSAESEGMR 331
Query: 306 KAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESF 365
+AHI+D A+ + WL+K++ + G V TE++ +DK E F
Sbjct: 332 RAHIKDAVALCELFNWLEKEVPK--------------------GGV--TEISAADKAEEF 369
Query: 366 RASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITR 425
R + F LSFPTISS GP AI+HY+P ET + + +YL DSGAQY+DGTTD+TR
Sbjct: 370 RRQQADFVDLSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTR 429
Query: 426 TFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGH 485
T HF P+A+EK C+T VLKGHIA+ AVFP GT GH LD AR LW GLDY HGTGH
Sbjct: 430 TMHFETPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGH 489
Query: 486 GVGSYLNVHEGPQSISFKP-RNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTKF 544
GVGS+LNVHEGP IS+K + P+ A M TDEPGYYEDG FGIR+ENV++V TK+
Sbjct: 490 GVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTDEPGYYEDGAFGIRIENVVLVVPVKTKY 549
Query: 545 NFGDKGYLSFEHITWAPYQIKMINLKSLTPEEIDWLNAYHSKCRDILAPYLD----EAEL 600
NF ++G L+ E +T P Q KMI++ SLT +E DWLN YH CRD++ L + L
Sbjct: 550 NFNNRGSLTLEPLTLVPIQTKMIDVDSLTDKECDWLNNYHLTCRDVIGKELQKQGRQEAL 609
Query: 601 AWLKKATEPAS 611
WL + T+P S
Sbjct: 610 EWLIRETQPIS 620
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 17/220 (7%)
Query: 322 LDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTIS 381
++K Q I + FLE T ++ +G +TE ++ LE + KE G++F TI
Sbjct: 139 IEKIKQAIEISERAFLE---TVQQIRAG---MTEKEIAALLE-YTMRKEGAEGVAFDTIV 191
Query: 382 SVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYT 441
+ G +A+ H + D + + D GA Y++ DITR G+PS K ++
Sbjct: 192 ASGCRSALPHGKASDKVVERGD---VIVIDFGATYENYCADITRVVSIGEPSDEVKEVHS 248
Query: 442 AVLKGHIALGNAVFPNGTCGHTLDILARLPLWK--YGLDYRHGTGHGVGSYLNVHEGPQS 499
VL+ + G G LD +AR + + YG + H GHG+G L VHEGP +
Sbjct: 249 IVLEAQ-ERALKIAKAGVTGKLLDSVAREFIREKGYGEFFGHSLGHGIG--LEVHEGP-A 304
Query: 500 ISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 539
ISF+ + P+ ++ T EPG Y +G FGIR+E +V+ +
Sbjct: 305 ISFR-NDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVLKE 343
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 29 FVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPN 88
+ SGFTGS + LI+ N LL TD RY +QA QE E + ++ + V N+L
Sbjct: 34 YFSGFTGSFSIILISENTRLLITDSRYTVQAKQETDFEVREVKGGDFIDVLKKTVNDLKI 93
Query: 89 DAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEF 148
I ++ VS+ +R AF ++ + + ++ K+ +E Q IE
Sbjct: 94 -KTIALEEERVSLSLFRRISSAFGDRKFIGIDDEVKQM-RMVKDEGEIEKIK---QAIEI 148
Query: 149 AGSSVVEKLKELREKLTNEKARGIIITTL 177
+ + +E ++++R +T ++ ++ T+
Sbjct: 149 SERAFLETVQQIRAGMTEKEIAALLEYTM 177
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 353 LTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDS 412
++E+ VS++LE F K+ SF I + G +A+ H SE E D
Sbjct: 161 VSEIEVSNELEFF-MRKQGATSSSFDIIVASGLRSALPH-GVASEKVIE--TGDFVTLDF 216
Query: 413 GAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILAR--L 470
GA Y+ +DITRT G+PS K Y VL+ + N + G G D L R +
Sbjct: 217 GAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGI-KAGLTGREADALTRDYI 275
Query: 471 PLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIR 530
YG + H TGHG+G L +HE P ++F+ V + M T EPG Y G G+R
Sbjct: 276 TEKGYGEYFGHSTGHGIG--LEIHEAP-GLAFRSDTV-LEPGMAVTVEPGIYIPGIGGVR 331
Query: 531 LENVLVVT 538
+E+ ++VT
Sbjct: 332 IEDDIIVT 339
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 27 REFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTG 65
R +++ FTG+AG+ LI+ A TD RY QA+++ G
Sbjct: 30 RRYMANFTGTAGVVLISKKRAQFITDFRYVEQASKQAVG 68
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 375 LSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSA 434
+SF I + GPN A H+ P + D + + D GA+Y +D+TRT G PS
Sbjct: 203 VSFEPIVASGPNGANPHHRPSHRKIRKGD---VVIFDYGAKYLGYCSDVTRTVVVGPPSE 259
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHGVGSYLN 492
K Y V + V G +D AR + KYG + H TGHG+G ++
Sbjct: 260 EVKKVYEIVKEAQETAVQKV-AEGIPAEVVDATARGIISKYGYGEYFIHRTGHGLG--ID 316
Query: 493 VHEGPQSISFKPRNVPI-HASMTATDEPGYYEDGNFGIRLENVLVVTD 539
VHE P P N I M T EPG Y G FG+R+E+ + + D
Sbjct: 317 VHEEPY---ISPGNKKILKDGMVFTIEPGIYLQGKFGVRIEDDVALVD 361
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAH 435
+F TI + G +A+ H + D + + D GA YQ +DITRT G P+
Sbjct: 180 AFDTIIASGYRSALPHGVASDKRIERGD---LVVIDLGALYQHYNSDITRTIVVGSPNEK 236
Query: 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILAR--LPLWKYGLDYRHGTGHGVGSYLNV 493
+K Y VL+ + P G LD +AR + + YG + H GHGVG L V
Sbjct: 237 QKEIYEIVLEAQKKAVESAKP-GITAKELDSIARNIIAEYGYGEYFNHSLGHGVG--LEV 293
Query: 494 HEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTK 543
HE P+ + + M T EPG Y G+R+E+ +++T +K
Sbjct: 294 HEWPRVSQYD--ETVLREGMVITIEPGIYIPKIGGVRIEDTILITKNGSK 341
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 13/189 (6%)
Query: 354 TEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSG 413
TE V+ + ++ H ++F + S GP+ A H+ ++ I + D G
Sbjct: 182 TEAQVAADIAEAIVAEGH-SAVAFVIVGS-GPHGADPHHGYSDR---KLQVGDIVVVDIG 236
Query: 414 AQYQDGT-TDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPL 472
Y+ G +D TRT+ G PS Y+A+ + A +AV P G +D AR L
Sbjct: 237 GTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDAVRP-GVTAAQVDAAARDVL 295
Query: 473 WKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIR 530
GL + H TGHG+G L VHE P ++ +P+ A M + EPG Y G +G R
Sbjct: 296 ADAGLAEYFVHRTGHGIG--LCVHEEPYIVAGN--ELPLVAGMAFSIEPGIYFPGRWGAR 351
Query: 531 LENVLVVTD 539
+E+++VVT+
Sbjct: 352 IEDIVVVTE 360
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAH 435
+F TI + G +A+ H + D + + D GA Y +DITRT G P+
Sbjct: 177 AFDTIIASGHRSALPHGVASDKRIERGD---LVVIDLGALYNHYNSDITRTIVVGSPNEK 233
Query: 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL-DYR-HGTGHGVGSYLNV 493
++ Y VL+ A P G LD +AR + +YG DY H GHGVG L +
Sbjct: 234 QREIYEIVLEAQKRAVEAAKP-GMTAKELDSIAREIIKEYGYGDYFIHSLGHGVG--LEI 290
Query: 494 HEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTK 543
HE P+ + + M T EPG Y G+R+E+ +++T+ K
Sbjct: 291 HEWPRISQYD--ETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENGAK 338
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
Query: 374 GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPS 433
G++F I + G NAA H+ P + D I + D GA+++ +DITRT G+
Sbjct: 181 GIAFEPIVASGENAANPHHEPGERKIRKGD---IIILDYGARWKGYCSDITRTIGLGELD 237
Query: 434 AHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWK--YGLDYRHGTGHGVGSYL 491
Y V + AV G +D AR + K YG + H TGHG+G L
Sbjct: 238 ERLVKIYEVVKDAQESAFKAV-REGIKAKDVDSRAREVISKAGYGEYFIHRTGHGLG--L 294
Query: 492 NVHEGPQSISFKPRN-VPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTK 543
+VHE P P V + MT T EPG Y G G+R+E+ +VV + +
Sbjct: 295 DVHEEPY---IGPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGKGR 344
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ C EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYTENE--CXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 285
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 286 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 344
Query: 479 YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDGNFGI 529
+R HG+ ++L + + + R+ + M T EPG Y + GI
Sbjct: 345 HRPFFMHGLSAWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGI 404
Query: 530 RLENVLVVTDANTK 543
R+E+ +V+T+ +
Sbjct: 405 RIEDDIVITETGNE 418
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDGNFGI 529
+R HG+ +L + + + R+ + M T EPG Y + GI
Sbjct: 344 HRPFFMHGLSHWLGLDVADVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGI 403
Query: 530 RLENVLVVTDANTK 543
R+E+ +V+T+ +
Sbjct: 404 RIEDDIVITETGNE 417
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ HG H +G L+VH+ + + R+ + M T PG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ HG H +G L+VH+ + + R+ + M T PG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L +G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L D+G +Y+ ITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ G H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMAGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 434
S+ TI G N I+ Y+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILAYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 435 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 478
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 479 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 525
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 526 NFGIRLENVLVVTDANTK 543
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 337 LEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHY---- 392
+ EA +E + V + E + E + S+ R S+ I G N+A++HY
Sbjct: 202 ISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAG 261
Query: 393 SPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSAHEKACYTAVLKGHIALG 451
+P T D + L D G +Y +DIT +F GK +A +KA Y AVL+ A+
Sbjct: 262 APNDRTIQNGD---MCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVM 318
Query: 452 NAVFPN 457
A+ P
Sbjct: 319 GAMKPG 324
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 30/180 (16%)
Query: 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTF-HFGKPSA 434
+F TI + G NA ++HY A++ + L D GAQ DI+ TF G S+
Sbjct: 224 AFNTILASGKNATVLHYEDND---AQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSS 280
Query: 435 HEKACYTAVLKGHIALGNAVFPN----GTCGHTLDILAR-----------LPLWKYGLDY 479
+K Y VL + P H +LA L KY Y
Sbjct: 281 RQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKY---Y 337
Query: 480 RHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY-EDGNFGIRLENVLVVT 538
HG H +G L+ H+ ++K R + T EPG Y E+ + GIR+E+ ++VT
Sbjct: 338 YHGVSHFLG--LDTHDVG---TYKDR--VLEEGXVITIEPGLYIEEESIGIRIEDDILVT 390
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 75/203 (36%), Gaps = 44/203 (21%)
Query: 377 FPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHE 436
+ I ++ N AI+HY+ + A S +L D+GA + DITRT+ F E
Sbjct: 212 YGNIVALNENCAILHYT-HFDRVAPATHRS-FLIDAGANFNGYAADITRTYDFTGEG--E 267
Query: 437 KACYTAVLKGH-IALGNAVFPNGTCGHT-LDILARLPLWKYGLD---------------- 478
A A +K H IAL N + P G LD R+ +
Sbjct: 268 FAELVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITS 327
Query: 479 --YRHGTGHGVGSYLNVH--------------EGPQSISFKPRNVPIHASMTATDEPGYY 522
+ HG GH +G L VH E P+ F I A+ T EPG Y
Sbjct: 328 TFFPHGLGHHIG--LQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLY 385
Query: 523 EDGNFGIRLENVLVVTDANTKFN 545
F L L TD N N
Sbjct: 386 ----FIDSLLGDLAATDNNQHIN 404
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 367 ASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRT 426
AS++ + + +I ++ +A+I+HY Q +T A + S +L D+GA Y DITRT
Sbjct: 202 ASRQGDNDVPYTSIVALNEHASILHYM-QXDTVAPKESRS-FLIDAGANYHGYAADITRT 259
Query: 427 FHFGKPSAHEKACYTAVLKG 446
+ + H A + +++
Sbjct: 260 --YAQEGVHNSAMFRDLIQA 277
>pdb|3OVK|A Chain A, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|B Chain B, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|C Chain C, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|D Chain D, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
Length = 132
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 29 FVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTG 65
+++GF+G+A LIT +L TD RY L A + G
Sbjct: 37 YLTGFSGTAATVLITAKRRVLITDSRYTLLAKASVEG 73
>pdb|3O59|X Chain X, Dna Polymerase D Large Subunit Dp2(1-300) From Pyrococcus
Horikoshii
Length = 300
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 485 HGVGSYLNVHEGPQSISFKPRNVPIHASMTATDE 518
H S L H P+ + RN+PI + ATDE
Sbjct: 195 HRTVSRLQYHPSPEEVRLAXRNIPIEITGEATDE 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,895,223
Number of Sequences: 62578
Number of extensions: 812103
Number of successful extensions: 2081
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 28
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)