Query 007222
Match_columns 612
No_of_seqs 368 out of 2485
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 20:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2413 Xaa-Pro aminopeptidase 100.0 3E-112 5E-117 904.0 41.2 572 7-610 24-606 (606)
2 PRK09795 aminopeptidase; Provi 100.0 2.2E-61 4.7E-66 516.3 36.4 343 155-568 2-357 (361)
3 COG0006 PepP Xaa-Pro aminopept 100.0 4.7E-60 1E-64 510.2 36.1 361 147-563 4-379 (384)
4 TIGR02993 ectoine_eutD ectoine 100.0 2.4E-59 5.2E-64 504.9 35.2 360 146-567 4-388 (391)
5 PRK14575 putative peptidase; P 100.0 5.1E-57 1.1E-61 488.5 36.3 357 156-568 12-404 (406)
6 PRK14576 putative endopeptidas 100.0 1.2E-55 2.7E-60 477.6 36.9 351 157-567 13-402 (405)
7 PRK10879 proline aminopeptidas 100.0 1.4E-50 3E-55 441.5 32.0 348 149-564 2-425 (438)
8 PRK15173 peptidase; Provisiona 100.0 1.3E-49 2.8E-54 418.1 30.8 263 257-568 53-321 (323)
9 PRK12897 methionine aminopepti 100.0 3.2E-45 6.9E-50 371.9 25.0 220 294-559 3-247 (248)
10 PRK13607 proline dipeptidase; 100.0 1.2E-44 2.6E-49 394.1 30.2 229 283-559 149-438 (443)
11 PRK07281 methionine aminopepti 100.0 1.1E-44 2.4E-49 372.8 25.6 226 292-564 1-284 (286)
12 PRK12318 methionine aminopepti 100.0 1E-43 2.3E-48 367.5 25.9 229 287-561 34-290 (291)
13 TIGR00500 met_pdase_I methioni 100.0 3.7E-43 8E-48 356.6 25.3 219 294-559 2-246 (247)
14 PRK05716 methionine aminopepti 100.0 7.2E-43 1.6E-47 355.4 25.2 224 292-562 2-251 (252)
15 cd01090 Creatinase Creatine am 100.0 2.4E-42 5.3E-47 346.1 24.1 212 301-559 1-228 (228)
16 PRK12896 methionine aminopepti 100.0 4.3E-42 9.3E-47 350.4 24.9 222 291-559 6-254 (255)
17 cd01085 APP X-Prolyl Aminopept 100.0 7.5E-42 1.6E-46 341.3 25.5 213 304-541 2-218 (224)
18 cd01087 Prolidase Prolidase. E 100.0 6E-42 1.3E-46 346.9 23.8 211 301-559 1-243 (243)
19 PLN03158 methionine aminopepti 100.0 2.7E-41 5.8E-46 360.4 26.6 233 288-566 130-388 (396)
20 KOG2414 Putative Xaa-Pro amino 100.0 3.8E-40 8.3E-45 335.9 24.9 363 132-564 42-477 (488)
21 cd01092 APP-like Similar to Pr 100.0 1.7E-39 3.6E-44 320.6 24.7 204 301-540 1-206 (208)
22 KOG2737 Putative metallopeptid 100.0 9.2E-40 2E-44 329.6 21.2 239 285-568 175-475 (492)
23 cd01086 MetAP1 Methionine Amin 100.0 3E-39 6.5E-44 326.1 23.8 212 301-559 1-238 (238)
24 cd01091 CDC68-like Related to 100.0 2.7E-39 5.8E-44 326.4 23.3 215 301-559 1-243 (243)
25 PF00557 Peptidase_M24: Metall 100.0 7.1E-38 1.5E-42 309.2 19.6 202 302-539 1-207 (207)
26 cd01066 APP_MetAP A family inc 100.0 9.7E-36 2.1E-40 291.6 24.8 203 301-540 1-205 (207)
27 cd01089 PA2G4-like Related to 100.0 3.1E-35 6.8E-40 294.9 21.5 208 301-559 1-228 (228)
28 COG0024 Map Methionine aminope 100.0 1.6E-31 3.4E-36 266.5 24.7 222 294-561 4-253 (255)
29 TIGR00495 crvDNA_42K 42K curve 100.0 7.1E-30 1.5E-34 273.3 26.0 198 293-522 11-232 (389)
30 PRK08671 methionine aminopepti 100.0 3.3E-29 7.1E-34 259.9 23.3 193 300-530 1-196 (291)
31 KOG2738 Putative methionine am 100.0 2E-29 4.4E-34 248.0 20.1 223 293-560 114-360 (369)
32 PTZ00053 methionine aminopepti 100.0 4.3E-29 9.2E-34 268.8 23.2 200 291-527 148-364 (470)
33 TIGR00501 met_pdase_II methion 100.0 4.5E-29 9.6E-34 259.1 22.3 198 298-533 2-202 (295)
34 cd01088 MetAP2 Methionine Amin 100.0 3.4E-28 7.4E-33 252.3 21.8 193 301-531 1-196 (291)
35 KOG1189 Global transcriptional 99.9 1.7E-25 3.6E-30 242.2 23.6 365 180-606 20-453 (960)
36 COG5406 Nucleosome binding fac 99.8 1.1E-18 2.3E-23 186.1 18.0 350 150-540 8-410 (1001)
37 PRK09795 aminopeptidase; Provi 99.6 6.2E-14 1.3E-18 150.3 20.7 109 15-130 15-125 (361)
38 PF01321 Creatinase_N: Creatin 99.4 1.7E-12 3.7E-17 118.1 9.1 128 156-295 1-132 (132)
39 PF01321 Creatinase_N: Creatin 99.3 2.6E-12 5.6E-17 116.9 8.9 112 6-130 13-130 (132)
40 KOG2775 Metallopeptidase [Gene 99.1 8.6E-10 1.9E-14 109.9 14.9 162 349-519 106-284 (397)
41 KOG2776 Metallopeptidase [Gene 99.1 3E-09 6.5E-14 108.8 15.0 155 293-477 13-182 (398)
42 COG0006 PepP Xaa-Pro aminopept 98.3 0.00017 3.7E-09 78.2 23.6 115 13-130 23-152 (384)
43 TIGR02993 ectoine_eutD ectoine 98.1 5.7E-06 1.2E-10 89.9 8.5 113 6-130 26-156 (391)
44 PRK14575 putative peptidase; P 97.7 0.00021 4.5E-09 78.1 10.1 113 6-130 24-176 (406)
45 KOG2413 Xaa-Pro aminopeptidase 97.0 0.00086 1.9E-08 73.9 5.5 103 156-278 11-129 (606)
46 PLN03158 methionine aminopepti 97.0 0.0035 7.6E-08 67.9 10.0 113 419-539 127-247 (396)
47 PRK14576 putative endopeptidas 96.8 0.0055 1.2E-07 67.0 9.8 113 6-130 24-175 (405)
48 cd01086 MetAP1 Methionine Amin 96.7 0.011 2.5E-07 59.4 10.7 99 434-539 2-105 (238)
49 PRK05716 methionine aminopepti 96.0 0.045 9.7E-07 55.6 10.4 96 435-538 13-114 (252)
50 cd01088 MetAP2 Methionine Amin 95.7 0.068 1.5E-06 55.8 10.5 86 434-525 2-87 (291)
51 PRK12896 methionine aminopepti 95.4 0.08 1.7E-06 53.8 9.5 108 423-538 4-119 (255)
52 COG0024 Map Methionine aminope 95.1 0.089 1.9E-06 53.5 8.6 100 435-539 13-116 (255)
53 KOG2738 Putative methionine am 94.0 0.19 4E-06 51.4 7.6 94 436-539 125-226 (369)
54 TIGR00495 crvDNA_42K 42K curve 91.6 1.3 2.8E-05 48.2 10.7 99 436-539 22-130 (389)
55 PF05195 AMP_N: Aminopeptidase 91.3 0.59 1.3E-05 42.9 6.6 89 149-247 2-118 (134)
56 cd01087 Prolidase Prolidase. E 91.1 2 4.3E-05 43.3 10.9 94 435-537 3-97 (243)
57 PF00557 Peptidase_M24: Metall 90.9 1.1 2.5E-05 43.7 8.7 95 435-538 2-99 (207)
58 PRK12897 methionine aminopepti 90.5 2.4 5.2E-05 43.0 10.9 94 436-537 13-112 (248)
59 cd01092 APP-like Similar to Pr 90.3 1.9 4.1E-05 42.0 9.7 97 435-539 3-100 (208)
60 PRK08671 methionine aminopepti 90.1 2.8 6.1E-05 43.7 11.2 95 435-538 4-100 (291)
61 TIGR00501 met_pdase_II methion 89.8 2.9 6.3E-05 43.7 11.1 95 435-538 7-103 (295)
62 cd01066 APP_MetAP A family inc 89.0 2.6 5.6E-05 40.5 9.5 96 435-538 3-98 (207)
63 TIGR00500 met_pdase_I methioni 88.4 3.5 7.5E-05 41.6 10.2 95 436-538 12-112 (247)
64 cd01090 Creatinase Creatine am 87.5 4.3 9.2E-05 40.7 10.1 96 435-538 3-105 (228)
65 cd01089 PA2G4-like Related to 87.1 5.4 0.00012 39.9 10.6 100 435-539 3-112 (228)
66 PF14826 FACT-Spt16_Nlob: FACT 86.2 1.3 2.9E-05 42.1 5.2 58 151-216 4-79 (163)
67 PRK07281 methionine aminopepti 86.0 5 0.00011 41.8 9.9 82 436-521 13-101 (286)
68 PRK12318 methionine aminopepti 85.4 7.5 0.00016 40.5 10.9 96 436-537 52-153 (291)
69 PTZ00053 methionine aminopepti 84.6 8 0.00017 43.0 11.1 92 436-537 161-261 (470)
70 PRK05579 bifunctional phosphop 74.7 7.4 0.00016 42.5 6.8 54 116-177 299-352 (399)
71 PRK10879 proline aminopeptidas 72.1 27 0.00059 38.6 10.6 92 436-537 182-276 (438)
72 cd01085 APP X-Prolyl Aminopept 71.5 20 0.00044 35.7 8.6 96 435-537 5-106 (224)
73 PRK15173 peptidase; Provisiona 66.1 45 0.00098 35.3 10.3 94 436-538 104-198 (323)
74 TIGR00521 coaBC_dfp phosphopan 60.6 19 0.00041 39.3 6.3 57 116-180 297-353 (390)
75 KOG2775 Metallopeptidase [Gene 58.6 49 0.0011 34.4 8.3 83 437-525 89-177 (397)
76 TIGR02114 coaB_strep phosphopa 56.1 23 0.0005 35.5 5.7 56 116-179 132-190 (227)
77 cd01091 CDC68-like Related to 53.5 1.1E+02 0.0023 31.0 10.1 82 349-431 139-234 (243)
78 PRK06732 phosphopantothenate-- 47.6 38 0.00083 33.9 5.7 56 116-179 133-191 (229)
79 KOG2776 Metallopeptidase [Gene 36.5 1.3E+02 0.0029 32.1 7.6 95 436-540 24-133 (398)
80 PF00486 Trans_reg_C: Transcri 33.8 53 0.0012 26.1 3.6 58 99-170 6-63 (77)
81 PF08003 Methyltransf_9: Prote 29.2 1.9E+02 0.0042 30.5 7.4 83 91-179 141-227 (315)
82 PF05195 AMP_N: Aminopeptidase 27.8 24 0.00052 32.2 0.6 36 17-52 37-75 (134)
83 PF04127 DFP: DNA / pantothena 27.8 68 0.0015 31.1 3.7 56 116-180 115-171 (185)
84 PRK11835 hypothetical protein; 27.0 28 0.00062 30.5 0.8 16 22-37 11-26 (114)
85 TIGR03241 arg_catab_astB succi 26.9 3.5E+02 0.0076 29.5 8.9 141 138-325 256-404 (443)
86 cd00383 trans_reg_C Effector d 26.6 1E+02 0.0022 25.5 4.2 58 99-170 24-81 (95)
87 PF13989 YejG: YejG-like prote 26.0 30 0.00066 30.0 0.8 15 22-36 8-22 (106)
88 PRK09620 hypothetical protein; 25.2 1.6E+02 0.0034 29.6 5.9 55 116-178 127-184 (229)
89 PRK13607 proline dipeptidase; 22.8 2.4E+02 0.0051 31.3 7.3 32 436-468 170-201 (443)
90 TIGR00273 iron-sulfur cluster- 21.2 1.6E+02 0.0036 32.5 5.5 90 55-146 52-145 (432)
91 smart00862 Trans_reg_C Transcr 21.0 1.6E+02 0.0036 23.1 4.3 58 99-169 6-63 (78)
No 1
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-112 Score=903.97 Aligned_cols=572 Identities=51% Similarity=0.916 Sum_probs=541.0
Q ss_pred cceeEE---ecCCCcccCCccccceeeeCcccCceeEEEeCCCcEEEecchhHHHHhhccCCCEEEEEcC-CCccHHHHH
Q 007222 7 LSSFLL---KIITSEYVSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRML-EDPAVDVWM 82 (612)
Q Consensus 7 lda~l~---d~h~~e~l~~~~~n~~YlTGFtGs~g~llit~~~a~l~TD~RY~eqA~~e~~~~~~v~~~~-~~~~~~~~l 82 (612)
++|+++ |.|+|||+...+++++|+|||+||+|+++||..+|.||||+||+.||.+|++++|++++.+ ..+.+.+||
T Consensus 24 i~aYi~Ps~DaH~sEy~~~~D~R~~flsGFsGsag~Avit~~~a~lwtD~RY~~QA~~qld~~W~l~k~~~~~~~v~~wl 103 (606)
T KOG2413|consen 24 IDAYILPSTDAHQSEYIADRDERRAFLSGFSGSAGTAVITEEEAALWTDGRYFQQAEQQLDSNWTLMKMGEDVPTVEEWL 103 (606)
T ss_pred ceEEEccCCchhhhhhhcchhhhhhhhcccCCCcceEEEecCcceEEEccHHHHHHHhhhcccceeeeccCCCccHHHHH
Confidence 789999 9999999999999999999999999999999999999999999999999999889999876 447899999
Q ss_pred HhhCCCCCEEEEcCCcccHHHHHHHHHHhhcCCcEEEEcCCChhhhhhhcCCCCCCCCceeecccccCCCHHHHHHHHHH
Q 007222 83 ANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELRE 162 (612)
Q Consensus 83 ~~~~~~~~~vgfE~~~is~~~y~~L~~~l~~~~~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~~~~~Rl~rlr~ 162 (612)
.+.+....+||||+..+|+..|+++++.|...+.+++++..|+||.+|++||.++++++..++..|+|.++..|++.+|+
T Consensus 104 ~~~l~~~~~vG~Dp~Lis~~~~~~~~~~l~s~~~~Lv~i~~nLVD~iW~~rP~~~~~~v~~l~~~~~G~~~~~Kv~~LR~ 183 (606)
T KOG2413|consen 104 AKVLPEGSRVGIDPTLISFDAWKQLEKSLTSKGLELVPIPGNLVDEIWGDRPERPGNPVIVLDLEFAGLSVDDKVDNLRK 183 (606)
T ss_pred HHhCCCccccccCcceechhHHHhHHHHHhhCCCeEeeccccchhhhhccCCccCCCceEEeeccccCcchhHHHHHHHH
Confidence 99888889999999999999999999999887899999989999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEecCccccceeeecccCCCCCCceeeEEEEEeCCceEEEEeCCCCCHHHHHHhhcCCeEEEeCCchHHHH
Q 007222 163 KLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLKESGVEVRDYDAVSSDV 242 (612)
Q Consensus 163 ~m~~~gld~lll~~~~ni~yltg~~~~~~~~~p~~~a~liv~~~~~~L~~~~~~~~~~~~~~l~~~~v~v~~y~~~~~~l 242 (612)
.|++.+.+++|+++.++|+||.|+||+|++|||+|++|++++.+++.||++..+++.....++...++++++|.++...+
T Consensus 184 ~l~~~~~~a~Vvs~LdeIaWllNLRGsDipynPv~~sY~~it~dei~lfvd~~k~~~~~~~~~~~~~v~i~pY~~i~~~i 263 (606)
T KOG2413|consen 184 KLKEKKCDAFVVTALDEIAWLLNLRGSDIPYNPVFYSYAIITMDEIFLFVDNSKLSDESKKHLREDGVEIRPYDQIWSDI 263 (606)
T ss_pred HHhhcCCcEEehhhHHHHHHHHhcccCcCCCCchhhhhhhhhhhhhheeecCcccCchhHHHHhhCceeeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888877889999999999999
Q ss_pred HHHHhccCCCCCCCCCCCEEEEcCCCCcHHHHHhcccCceeecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007222 243 VLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLNSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWL 322 (612)
Q Consensus 243 ~~l~~~~l~~~~~~~~~~~ig~d~~~~~~~~~~~L~~~~~~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l 322 (612)
+.+..+ ....++++.+ .+++.+...+++...+...+++..++++|++.|+++||.|+..++.|++++++|+
T Consensus 264 ~~~~~~--------~~~~~i~ia~-~~~~~i~~~i~~~~~~~~~Spi~~~kAiKN~~E~~gmr~shirD~~Alve~~~wl 334 (606)
T KOG2413|consen 264 KNWASA--------FADKKIWISP-ETNYGIGELIGEDHSMIDPSPISRAKAIKNDDELKGMRNSHIRDGAALVEYFAWL 334 (606)
T ss_pred HHHhcc--------cCceeEeecc-cceeeecccccccccccccCHHHHHHHhcChHHhhhhhhcchhhHHHHHHHHHHH
Confidence 888752 1357788876 6777787778887778889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeEEEe-cCCCcccccCCCCCCCCc
Q 007222 323 DKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSV-GPNAAIMHYSPQSETCAE 401 (612)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~iv~~-G~~~~~~h~~p~~~~~~~ 401 (612)
+..+. ...-+||.+++.+++++|.++.++.++||+||+++ |+|+|++||+|...++++
T Consensus 335 e~~~~---------------------~g~~itE~~~A~kle~fR~~~~~fmglSFeTIS~s~G~NgAviHYsP~~e~n~~ 393 (606)
T KOG2413|consen 335 EKELH---------------------KGYTITEYDAADKLEEFRSRQDHFMGLSFETISSSVGPNGAVIHYSPPAETNRI 393 (606)
T ss_pred hhhhh---------------------cCcccchhhHHHHHHHHHHhhccccCcCcceeeccCCCCceeeecCCCccccce
Confidence 98764 12239999999999999999999999999999977 999999999999989999
Q ss_pred CCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCCCC
Q 007222 402 MDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRH 481 (612)
Q Consensus 402 l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~~h 481 (612)
+.+..+++||+|+||..++||+|||+++|+||++++++|+.|+++|.++.++++|+|++++.+|.++|..+|+.|++|.|
T Consensus 394 i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g~~lD~laR~~LW~~gLDy~H 473 (606)
T KOG2413|consen 394 VSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKGSVLDALARSALWKAGLDYGH 473 (606)
T ss_pred ecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhcccCCCCCcchhHHHHHHHHHhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccCCCCCCCCCC--CCcccccCCeEeecccceecCcceEEEeeeeEEeeCCCcccCCCCccccceeccc
Q 007222 482 GTGHGVGSYLNVHEGPQSISFKP--RNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 482 ~~GHgiG~~l~~hE~P~~i~~~~--~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~ 559 (612)
++|||||+||+|||+|..++.++ ++.+|++||++++|||+|.+|.||+|+||+++|.+.+++++| .+||+||.||.
T Consensus 474 gTGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~~~s~EPGYY~dg~fGIRienv~~vvd~~~~~~~--~~~L~fe~lT~ 551 (606)
T KOG2413|consen 474 GTGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGMVFSIEPGYYKDGEFGIRIENVVEVVDAGTKHNF--RGFLTFEPLTL 551 (606)
T ss_pred CCCcccccceEeccCCceeeeeecCCCchhcCceEeccCCcccccCcceEEEeeEEEEEeccccccc--cceeeecccee
Confidence 99999999999999999888775 788899999999999999999999999999999999888888 67999999999
Q ss_pred CcccCCcccccCCCHHHHHHHHHHHHHHHHHHCCCccH----HHHHHHHHccccC
Q 007222 560 APYQIKMINLKSLTPEEIDWLNAYHSKCRDILAPYLDE----AELAWLKKATEPA 610 (612)
Q Consensus 560 ~P~~~~li~~~~~~~~e~~~~n~y~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 610 (612)
+|++++||+++||++||++|||.||.+|+++++|+|.. ++++||+++|+||
T Consensus 552 vP~q~klid~~LLs~eE~~~LN~Yh~~v~~~i~~~L~~~~~~~~~~WL~~~t~Pi 606 (606)
T KOG2413|consen 552 VPYQTKLIDKSLLSEEEINWLNEYHAKVRSKIGPELQKEGRMEEYKWLINATQPI 606 (606)
T ss_pred cceecccCChhhCCHHHHHHHHHHHHHHHHhccHHHhhccchhHHHHHHhhccCC
Confidence 99999999999999999999999999999999999994 7999999999998
No 2
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=2.2e-61 Score=516.29 Aligned_cols=343 Identities=23% Similarity=0.319 Sum_probs=292.9
Q ss_pred HHHHHHHHHHHhcCCCEEEecCccccceeeecccCCCCCCceeeEEEEEeCCceEEEEeCCCCCHHHHHHhhcCCeEEEe
Q 007222 155 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLKESGVEVRD 234 (612)
Q Consensus 155 ~Rl~rlr~~m~~~gld~lll~~~~ni~yltg~~~~~~~~~p~~~a~liv~~~~~~L~~~~~~~~~~~~~~l~~~~v~v~~ 234 (612)
+|++++|+.|+++++|+++|++++|++|||||.+.. ++++|+.++.+|+++.++.. ++...++ +.++..
T Consensus 2 ~Rl~~l~~~m~~~~lDa~lI~~~~n~~YLTGf~g~~--------g~llIt~~~~~l~td~ry~~-qa~~~~~--~~~v~~ 70 (361)
T PRK09795 2 TLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGS--------GYVVISRESAHILVDSRYYA-DVEARAQ--GYQLHL 70 (361)
T ss_pred cHHHHHHHHHHHCCCCEEEECCccccccccCccCCC--------eEEEEECCCCEEEcCcchHH-HHHhhCC--CceEEE
Confidence 589999999999999999999999999999998742 46788988888999986443 4444443 234444
Q ss_pred CCc---hHHHHHHHHhccCCCCCCCCCCCEEEEcCCCCcHHHHHhcccC---ceeecCCccchhhhcCCHHHHHHHHHHH
Q 007222 235 YDA---VSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLNSD---KVLLQQSPLALAKAIKNPVELDGLKKAH 308 (612)
Q Consensus 235 y~~---~~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~~~~~~~~~L~~~---~~~d~~~~v~~lR~iKs~~EI~~~r~A~ 308 (612)
+.+ +.+.+..++. . .+.++||+|...+++..+..|.+. .+++. .+..+|+|||++||+.||+|+
T Consensus 71 ~~~~~~~~~~L~~~L~-~-------~~~~~Ig~e~~~~s~~~~~~L~~~l~~~~~~~--~~~~lR~iKs~~Ei~~~r~a~ 140 (361)
T PRK09795 71 LDATNTLTTIVNQIIA-D-------EQLQTLGFEGQQVSWETAHRWQSELNAKLVSA--TPDVLRQIKTPEEVEKIRLAC 140 (361)
T ss_pred ecCCccHHHHHHHHHH-h-------cCCcEEEEecCcccHHHHHHHHHhcCcccccc--cHHHHhcCCCHHHHHHHHHHH
Confidence 322 3345555543 1 124689999988898877777542 33433 489999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCc
Q 007222 309 IRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAA 388 (612)
Q Consensus 309 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~iv~~G~~~~ 388 (612)
+++++++..+... +++|+||.|+++.++.. +...|+...+|++++++|+|++
T Consensus 141 ~i~~~~~~~~~~~---------------------------i~~G~tE~e~~~~~~~~-~~~~G~~~~~f~~iv~sG~~~~ 192 (361)
T PRK09795 141 GIADRGAEHIRRF---------------------------IQAGMSEREIAAELEWF-MRQQGAEKASFDTIVASGWRGA 192 (361)
T ss_pred HHHHHHHHHHHHh---------------------------ccCCCcHHHHHHHHHHH-HHHCCCCcCCCCeEEEEecccc
Confidence 9999999877654 58999999999999875 5567888899999999999999
Q ss_pred ccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCC--CCH---HHHHHHHHHHHHHHHHHhccCCCCCchhH
Q 007222 389 IMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGK--PSA---HEKACYTAVLKGHIALGNAVFPNGTCGHT 463 (612)
Q Consensus 389 ~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~--p~~---~~~~~~~~~~~a~~~~~~~~~P~G~~~~~ 463 (612)
.||+.|++ ++|++||+|++|+|+.|+||++|+||||++|. +++ +++++|+++++++.++++++|| |+++++
T Consensus 193 ~ph~~~~~---~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rp-G~~~~~ 268 (361)
T PRK09795 193 LPHGKASD---KIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRP-GVRCQQ 268 (361)
T ss_pred ccCCCCCC---ceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCC-CCcHHH
Confidence 99999976 99999999999999999999999999999963 333 3789999999999999999999 999999
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeecccceecCcceEEEeeeeEEeeCC
Q 007222 464 LDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDAN 541 (612)
Q Consensus 464 v~~~~~~~~~~~G~--~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~~~ 541 (612)
|+.++++++++.|+ +|.|++||||| +++||.|. ++.+ ++.+|+|||||+||||+|.|+.+|+|+||+|+||++
T Consensus 269 v~~~~~~~~~~~g~~~~~~h~~GHgiG--l~~he~p~-i~~~-~~~~l~~gmv~~iEpgiy~~~~~gvriEd~v~vt~~- 343 (361)
T PRK09795 269 VDDAARRVITEAGYGDYFGHNTGHAIG--IEVHEDPR-FSPR-DTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQ- 343 (361)
T ss_pred HHHHHHHHHHHcCCCccCCCCCCccCC--ccccCCCC-cCCC-CCCCcCCCCEEEECCEEEeCCCCEEEEeeEEEECCC-
Confidence 99999999999999 47999999999 99999998 7777 899999999999999999999999999999999999
Q ss_pred CcccCCCCccccceecccCcccCCccc
Q 007222 542 TKFNFGDKGYLSFEHITWAPYQIKMIN 568 (612)
Q Consensus 542 ~~~~~~~~~~~g~e~LT~~P~~~~li~ 568 (612)
|+|+||..| ++|+.
T Consensus 344 -----------G~e~Lt~~~--~~l~~ 357 (361)
T PRK09795 344 -----------GAEVLYAMP--KTVLL 357 (361)
T ss_pred -----------CcEeCcCCC--ceEEE
Confidence 999999999 45543
No 3
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-60 Score=510.16 Aligned_cols=361 Identities=29% Similarity=0.389 Sum_probs=298.3
Q ss_pred cccCCCHHHHHHHHHHHHHhcCCCEEEecCccccceeeecccCCCCCCceeeEEEEEe-CCceEEEEeCCCCCHHHHHHh
Q 007222 147 EFAGSSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVT-TNAAFLYVDKRKVSSEVISFL 225 (612)
Q Consensus 147 ~f~~~~~~~Rl~rlr~~m~~~gld~lll~~~~ni~yltg~~~~~~~~~p~~~a~liv~-~~~~~L~~~~~~~~~~~~~~l 225 (612)
.|+..++..|+.+++..|+++++|+++++++.|+.|+||+... .++. . ..++++ .++++|+++..... .+....
T Consensus 4 ~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~n~~yltg~~~~--~~~~-~-~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 78 (384)
T COG0006 4 RFADEEYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAF--GFER-L-QALLVPAEGEPVLFVRGRDEE-AAKETS 78 (384)
T ss_pred ccchHHHHHHHHHHHHHHHHcCCcEEEecCCCceEEEeCCCCC--cccc-e-EEEEEcCCCceEEEEcchhHH-HHHhhc
Confidence 4667789999999999999999999999999999999999741 1111 1 234455 44688999876533 222211
Q ss_pred hcCCeEEEeCCch------HHHHHHHHhccCCCCCCCCCCCEEEEcCCC--CcHHHHHhc----ccCceeecCCccchhh
Q 007222 226 KESGVEVRDYDAV------SSDVVLLQSNQLNPPADVQGSDLIWADPNS--CSYALYSKL----NSDKVLLQQSPLALAK 293 (612)
Q Consensus 226 ~~~~v~v~~y~~~------~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~--~~~~~~~~L----~~~~~~d~~~~v~~lR 293 (612)
......+..|.+. .+.+..+.. .. .....++|++... ++...+..+ +..+++++.+++.++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR 152 (384)
T COG0006 79 WIKLENVEVYEDDEDPAAPLDLLGALLE-EL-----GLAGKRIGIESASIFLTLAAFERLQAALPRAELVDASDLVDRLR 152 (384)
T ss_pred ccccCceEEEecCCccccHHHHHHHHHH-hc-----cccccceEEEeccCccCHHHHHHHHhhCCCCEEeccHHHHHHHH
Confidence 1100123333221 123444333 11 1235678988764 555544444 3347899999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 007222 294 AIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFR 373 (612)
Q Consensus 294 ~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~ 373 (612)
+|||+.||+.||+|+.++++|+.+++++ .++|+||.|++++++... .+.|..
T Consensus 153 ~iKs~~EI~~ir~A~~i~~~a~~~~~~~---------------------------~~~g~tE~ev~a~l~~~~-~~~G~~ 204 (384)
T COG0006 153 LIKSPAEIAKIRKAAEIADAALEAALEA---------------------------IRPGMTEAEIAAELEYAL-RKGGAE 204 (384)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHh---------------------------ccCCCcHHHHHHHHHHHH-HHcCCC
Confidence 9999999999999999999999999887 469999999999999864 457777
Q ss_pred CCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhc
Q 007222 374 GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNA 453 (612)
Q Consensus 374 ~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~ 453 (612)
+++|.+|+++|+|++.|||.|++ +++++||+|++|+|++|+|||||+||||++|+|+++|+++|+.|++|+++++++
T Consensus 205 ~~sf~~iv~~G~n~a~pH~~~~~---~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~ 281 (384)
T COG0006 205 GPSFDTIVASGENAALPHYTPSD---RKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAA 281 (384)
T ss_pred ccCcCcEEeccccccCcCCCCCc---ccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHcCC--CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeecccceecCcceEEE
Q 007222 454 VFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRL 531 (612)
Q Consensus 454 ~~P~G~~~~~v~~~~~~~~~~~G~--~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvri 531 (612)
+|| |+++++||.++|+++++.|+ +|.|++|||||+++++||.|..++.+ +..+|+||||||+|||+|.+|.+||||
T Consensus 282 ~rp-G~~~~~vd~~ar~~i~~~g~~~~~~h~~GHgvG~~l~vhE~p~~~~~~-~~~~L~~GMv~t~Epg~y~~g~~GirI 359 (384)
T COG0006 282 IRP-GVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYLSPG-SDTTLEPGMVFSIEPGIYIPGGGGVRI 359 (384)
T ss_pred hCC-CCcHHHHHHHHHHHHHhcCCcccccCCccccCCCCcccCcCccccCCC-CCccccCCcEEEeccccccCCCceEEE
Confidence 999 99999999999999999776 79999999999999999999536666 899999999999999999999999999
Q ss_pred eeeeEEeeCCCcccCCCCccccceecccCccc
Q 007222 532 ENVLVVTDANTKFNFGDKGYLSFEHITWAPYQ 563 (612)
Q Consensus 532 Ed~v~Vt~~~~~~~~~~~~~~g~e~LT~~P~~ 563 (612)
||+++||++ |+|+||..|.+
T Consensus 360 Ed~vlVte~------------G~e~LT~~~~~ 379 (384)
T COG0006 360 EDTVLVTED------------GFEVLTRVPKE 379 (384)
T ss_pred EEEEEEcCC------------CceecccCCcc
Confidence 999999999 99999977744
No 4
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=2.4e-59 Score=504.86 Aligned_cols=360 Identities=16% Similarity=0.185 Sum_probs=292.2
Q ss_pred ccccCCCHHHHHHHHHHHHHhcCCCEEEecCccccceeeecccCCCCCCceeeEEEEEe-CCceEEEEeCCCCCHHHHH-
Q 007222 146 IEFAGSSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVT-TNAAFLYVDKRKVSSEVIS- 223 (612)
Q Consensus 146 ~~f~~~~~~~Rl~rlr~~m~~~gld~lll~~~~ni~yltg~~~~~~~~~p~~~a~liv~-~~~~~L~~~~~~~~~~~~~- 223 (612)
..|+.+||++|++|+|+.|+++++|++|++++.|++|||||.+.. .....+++|+ .++++|+++..... .+..
T Consensus 4 ~~f~~~E~~~Rl~rl~~~m~~~~lDalli~~~~ni~YltG~~~~~----~~~~~~l~v~~~~~~~l~~~~~~~~-~~~~~ 78 (391)
T TIGR02993 4 LFFTRAEYQARLDKTRAAMEARGIDLLIVTDPSNMAWLTGYDGWS----FYVHQCVLLPPEGEPIWYGRGQDAN-GAKRT 78 (391)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCcccceeeccCCCCc----eEEEEEEEEcCCCceEEEehhhhhh-hHhhe
Confidence 458899999999999999999999999999999999999998532 1112456666 55788887754322 1221
Q ss_pred -HhhcCCeEEEeCCc---------hHHHHHHHHhccCCCCCCCCCCCEEEEcCCC--CcHHHHHhcc----cCceeecCC
Q 007222 224 -FLKESGVEVRDYDA---------VSSDVVLLQSNQLNPPADVQGSDLIWADPNS--CSYALYSKLN----SDKVLLQQS 287 (612)
Q Consensus 224 -~l~~~~v~v~~y~~---------~~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~--~~~~~~~~L~----~~~~~d~~~ 287 (612)
++.. .++..|.+ ..+.+..+.. .. +....+||++.+. ++...++.|. ..+++|+++
T Consensus 79 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-----g~~~~~ig~e~~~~~~~~~~~~~l~~~l~~~~~~d~~~ 150 (391)
T TIGR02993 79 AFMDH--DNIVGYPDHYVQSTERHPMDYLSEILQ-DR-----GWDSLTIGVEMDNYYFSAAAFASLQKHLPNARFVDATA 150 (391)
T ss_pred eeccc--cceeecccccccCCCCCHHHHHHHHHH-hc-----CCCCCcEEEecCCCccCHHHHHHHHHhCCCCEEEehHH
Confidence 2111 12343432 2344444443 11 1235689999764 6777666554 457899999
Q ss_pred ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHH
Q 007222 288 PLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRA 367 (612)
Q Consensus 288 ~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~ 367 (612)
++.++|+|||++||++||+|++++++++.++.+. +++|+||.|+++.+....+
T Consensus 151 ~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~---------------------------i~pG~tE~ei~~~~~~~~~ 203 (391)
T TIGR02993 151 LVNWQRAVKSETEISYMRVAARIVEKMHQRIFER---------------------------IEPGMRKCDLVADIYDAGI 203 (391)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hcCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999987664 4899999999999865322
Q ss_pred H---hCCCCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHH
Q 007222 368 S---KEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVL 444 (612)
Q Consensus 368 ~---~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~ 444 (612)
. ..|...++|.+++++|+|++.||+.|++ +++++||++++|+|+.|+||++|+||||++|+|+++|+++|+.++
T Consensus 204 ~~~~~~g~~~~~~~~iv~sG~~~a~pH~~~~~---~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~ 280 (391)
T TIGR02993 204 RGVDGFGGDYPAIVPLLPSGADASAPHLTWDD---SPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVL 280 (391)
T ss_pred hcccCcCCCcCCcccccccCccccCCCCCCCC---CcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHH
Confidence 1 1233456777899999999999999976 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCcccCCCCcccCC----CCCCCCCCCCcccccCCeEeeccc
Q 007222 445 KGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEG----PQSISFKPRNVPIHASMTATDEPG 520 (612)
Q Consensus 445 ~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~~h~~GHgiG~~l~~hE~----P~~i~~~~~~~~l~~gmv~~iEPg 520 (612)
+++.++++++|| |+++++|+.++++++++.|+...|++||||| +++|+. +..++.+ ++.+|+|||||++|||
T Consensus 281 ~a~~~~i~~ikp-G~~~~dv~~~~~~~~~~~G~~~~h~~GhgiG--l~~~~~~~e~~~~l~~~-~~~~L~~GMv~tvEpg 356 (391)
T TIGR02993 281 EGMEAGLEAAKP-GNTCEDIANAFFAVLKKYGIHKDSRTGYPIG--LSYPPDWGERTMSLRPG-DNTVLKPGMTFHFMTG 356 (391)
T ss_pred HHHHHHHHHcCC-CCcHHHHHHHHHHHHHHcCCccCCCceeeec--cCcCCCCCCccccccCC-CCceecCCCEEEEcce
Confidence 999999999999 9999999999999999999987899999999 888742 2236666 7899999999999999
Q ss_pred ceecCcceEEEeeeeEEeeCCCcccCCCCccccceecccCcccCCcc
Q 007222 521 YYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIKMI 567 (612)
Q Consensus 521 ~y~~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~~P~~~~li 567 (612)
+|.++ +|+|+||+|+||++ |+|.||.+| ++|+
T Consensus 357 iy~~~-~Gvried~v~VT~~------------G~e~Lt~~p--~~l~ 388 (391)
T TIGR02993 357 LWMED-WGLEITESILITET------------GVECLSSVP--RKLF 388 (391)
T ss_pred eEeCC-CCeEEeeEEEECCC------------cceecccCC--cccE
Confidence 99987 59999999999999 999999999 4444
No 5
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=5.1e-57 Score=488.54 Aligned_cols=357 Identities=18% Similarity=0.185 Sum_probs=287.2
Q ss_pred HHHHHHHHHHhcCCCEEEecCccccceeeecccCCC-CCCceeeEEEEEeCC-c-eE-EEEeCCCCCHHHHHHhhcCCe-
Q 007222 156 KLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDV-PYCPVVHAFAIVTTN-A-AF-LYVDKRKVSSEVISFLKESGV- 230 (612)
Q Consensus 156 Rl~rlr~~m~~~gld~lll~~~~ni~yltg~~~~~~-~~~p~~~a~liv~~~-~-~~-L~~~~~~~~~~~~~~l~~~~v- 230 (612)
-++|+|++|+++|+|+++|++|+|++|||||.+..+ ...|...+.++|+.+ + |+ ++++..+.. .++........
T Consensus 12 ~~~rlr~~m~~~glD~lvl~~p~n~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~i~p~~E~~-~~~~~~~~~~~~ 90 (406)
T PRK14575 12 VSRKLRTIMERDNIDAVIVTTCDNFYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLIIMNEFEAA-SLTLDMPNAELK 90 (406)
T ss_pred HHHHHHHHHHHcCCCEEeecCcchheeecccccccceecccCCceEEEEEcCCCCCceEEechhhhh-hhcccccccccc
Confidence 468999999999999999999999999999987542 234443355778865 3 55 666654333 22211100000
Q ss_pred EEEeCCc---hH------------------H----HHHHHHhccCCCCCCCCCCCEEEEcCCCCcHHHHHhc----ccCc
Q 007222 231 EVRDYDA---VS------------------S----DVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKL----NSDK 281 (612)
Q Consensus 231 ~v~~y~~---~~------------------~----~l~~l~~~~l~~~~~~~~~~~ig~d~~~~~~~~~~~L----~~~~ 281 (612)
++..|.+ .+ + .++...+.. +..+++||+|.+.++...++.| +..+
T Consensus 91 ~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~igve~~~~~~~~~~~l~~~lp~~~ 164 (406)
T PRK14575 91 TFPVWVDVDDPFNMRDSANNNKERPIGPPIESVCNILKDALNDA------RVLNKKIAIDLNIMSNGGKRVIDAVMPNVD 164 (406)
T ss_pred cCCceEeeeccccccchhhhhhcCCCCCCHHHHHHHHHHHHHhc------CCcCCEEEEccCCCCHHHHHHHHHhCCCCe
Confidence 1222322 11 2 333333211 1357899999888888777655 4457
Q ss_pred eeecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHH
Q 007222 282 VLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDK 361 (612)
Q Consensus 282 ~~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~ 361 (612)
++|+++.+.++|+|||++||+.||+|++++++++.++++. +++|+||.|+++.
T Consensus 165 ~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~---------------------------i~pG~tE~elaa~ 217 (406)
T PRK14575 165 FVDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKL---------------------------IRVGCTSAELTAA 217 (406)
T ss_pred EEEcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh---------------------------ccCCCCHHHHHHH
Confidence 8999999999999999999999999999999999987764 5899999999999
Q ss_pred HHHHHHHhCCCCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHH
Q 007222 362 LESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYT 441 (612)
Q Consensus 362 l~~~~~~~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~ 441 (612)
+..... ..|....++.+++++|++ +.+|+.|++ +++++||+|++|+|+.|+||++|+||||++|+|+++|+++|+
T Consensus 218 ~~~~~~-~~g~~~~~~~~~v~~G~~-~~~h~~~~~---~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~ 292 (406)
T PRK14575 218 YKAAVM-SKSETHFSRFHLISVGAD-FSPKLIPSN---TKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQ 292 (406)
T ss_pred HHHHHH-HcCCCcCCcCceEEECCC-cccCCCCCC---CcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHH
Confidence 976433 344433344478889988 568998876 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCC--CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeecc
Q 007222 442 AVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEP 519 (612)
Q Consensus 442 ~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~--~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEP 519 (612)
++++++.++++++|| |+++++|+.++++++++.|+ .+.|++|||||.++.+||.|. +..+ ++.+|+|||||++||
T Consensus 293 ~~~~a~~~~~~~~rp-G~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~e~P~-i~~~-~~~~Le~GMv~tiEp 369 (406)
T PRK14575 293 TIRTGHEHMLSMVAP-GVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPF-VSTH-ATESFTSGMVLSLET 369 (406)
T ss_pred HHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHcCCccccCCCCCCcccCCCCCccCCC-CCCC-CCCCcCCCCEEEECC
Confidence 999999999999999 99999999999999999999 367999999997679999998 6666 789999999999999
Q ss_pred cceecCcceEEEeeeeEEeeCCCcccCCCCccccceecccCcccCCccc
Q 007222 520 GYYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIKMIN 568 (612)
Q Consensus 520 g~y~~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~~P~~~~li~ 568 (612)
|+|.++.+|+|+||+|+||++ |+|+||..| ++|+.
T Consensus 370 giy~~g~gGvriEDtvlVT~~------------G~e~LT~~p--~~l~~ 404 (406)
T PRK14575 370 PYYGYNLGSIMIEDMILINKE------------GIEFLSKLP--RDLVS 404 (406)
T ss_pred eeecCCCcEEEEEeEEEEcCC------------CcccCCCCC--ccccc
Confidence 999999999999999999999 999999999 55553
No 6
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=1.2e-55 Score=477.58 Aligned_cols=351 Identities=19% Similarity=0.169 Sum_probs=283.0
Q ss_pred HHHHHHHHHhcCCCEEEecCccccceeeecccCCCCC-CceeeEEEEEeCC--ce-EEEEeCCCCCHHHH-----HHhhc
Q 007222 157 LKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPY-CPVVHAFAIVTTN--AA-FLYVDKRKVSSEVI-----SFLKE 227 (612)
Q Consensus 157 l~rlr~~m~~~gld~lll~~~~ni~yltg~~~~~~~~-~p~~~a~liv~~~--~~-~L~~~~~~~~~~~~-----~~l~~ 227 (612)
-+|+|++|+++|+|++||++|+||+||||+....+.+ .+....+++++.+ ++ .++++..+.. .+. .++.
T Consensus 13 ~~r~r~~M~~~gldalll~~p~ni~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~i~~~~e~~-~~~~~~~~~~~~- 90 (405)
T PRK14576 13 SRKARVVMEREGIDALVVTVCDNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEFEAA-STHFDMPNSVLK- 90 (405)
T ss_pred HHHHHHHHHHcCCCEEEeccccceeeeccccccceeeeccCCeEEEEecCCCCCCcEEEechhhhh-hhhccccccccc-
Confidence 3689999999999999999999999999998653222 2333344555544 35 5666654222 121 0111
Q ss_pred CCeEEEeCCc------------------------hHHHHHHHHhccCCCCCCCCCCCEEEEcCCCCcHHHHHh----ccc
Q 007222 228 SGVEVRDYDA------------------------VSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSK----LNS 279 (612)
Q Consensus 228 ~~v~v~~y~~------------------------~~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~~~~~~~~~----L~~ 279 (612)
++..|.+ +.+.++.+.. .. ++.+++||+|.+.++...+.. ++.
T Consensus 91 ---~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-----g~~~~rigve~~~~~~~~~~~l~~~~~~ 161 (405)
T PRK14576 91 ---TFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALE-DA-----GVLDKTIAIELQAMSNGGKGVLDKVAPG 161 (405)
T ss_pred ---cCCceEeecCCcccchhhhccccCCCCcHHHHHHHHHHHHH-Hh-----CCCCCEEEEccCCCCHHHHHHHHhhCCC
Confidence 1111211 1133333332 11 245789999988877765544 455
Q ss_pred CceeecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHH
Q 007222 280 DKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVS 359 (612)
Q Consensus 280 ~~~~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~ 359 (612)
.+++|+++++.++|+|||+.||+.||+|+++++.++.++++. +++|+||.|++
T Consensus 162 ~~~vd~~~~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~---------------------------i~pG~tE~ela 214 (405)
T PRK14576 162 LKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKK---------------------------IRVGCTAAELT 214 (405)
T ss_pred CeEEEcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh---------------------------ccCCCCHHHHH
Confidence 688999999999999999999999999999999999887754 58999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHH
Q 007222 360 DKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKAC 439 (612)
Q Consensus 360 ~~l~~~~~~~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~ 439 (612)
+.++.. +...|....++.+++++|+| +.+|+.|++ +++++||++++|+|+.|+||++|+||||++|+|+++|+++
T Consensus 215 a~~~~~-~~~~g~~~~~~~~~v~~G~~-~~~h~~~~~---~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~ 289 (405)
T PRK14576 215 AAFKAA-VMSFPETNFSRFNLISVGDN-FSPKIIADT---TPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQI 289 (405)
T ss_pred HHHHHH-HHHcCCCcCCCCCEEEECCc-ccCCCCCCC---cccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHH
Confidence 999874 33445333444589999999 568999886 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCC--CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEee
Q 007222 440 YTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATD 517 (612)
Q Consensus 440 ~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~--~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~i 517 (612)
|++++++++++++++|| |+++++|+.++++++++.|+ .+.|++|||+|.++.+||.|. ++.+ ++.+|+|||||++
T Consensus 290 ~~~~~~a~~a~~~~~rP-G~~~~dv~~a~~~~~~~~G~~~~~~~~~GHgiG~~l~~~e~P~-i~~~-~~~~Le~GMv~~v 366 (405)
T PRK14576 290 YDTIRTGHEHMLSMVAP-GVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVPF-VSTQ-ATETFCPGMVLSL 366 (405)
T ss_pred HHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcCcCCC-cCCC-CCCccCCCCEEEE
Confidence 99999999999999999 99999999999999999999 367899999997788999998 7766 7899999999999
Q ss_pred cccceecCcceEEEeeeeEEeeCCCcccCCCCccccceecccCcccCCcc
Q 007222 518 EPGYYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIKMI 567 (612)
Q Consensus 518 EPg~y~~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~~P~~~~li 567 (612)
||++|.+|.+|+|+||+|+||++ |+|+||..| ++|+
T Consensus 367 Ep~~y~~g~ggvriEDtvlVTe~------------G~e~LT~~p--~~l~ 402 (405)
T PRK14576 367 ETPYYGIGVGSIMLEDMILITDS------------GFEFLSKLD--RDLR 402 (405)
T ss_pred CCceeecCCCEEEEeeEEEECCC------------ccccCCCCC--cccc
Confidence 99999999999999999999999 999999999 4443
No 7
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=1.4e-50 Score=441.50 Aligned_cols=348 Identities=21% Similarity=0.282 Sum_probs=272.5
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCEEEecCc----------------cccceeeecccCCCCCCceeeEEEEEeC-C----c
Q 007222 149 AGSSVVEKLKELREKLTNEKARGIIITTL----------------DEVAWLYNIRGTDVPYCPVVHAFAIVTT-N----A 207 (612)
Q Consensus 149 ~~~~~~~Rl~rlr~~m~~~gld~lll~~~----------------~ni~yltg~~~~~~~~~p~~~a~liv~~-~----~ 207 (612)
+.++|.+|.++|.+.|.+.. ++|+.+. .|+.||||+.- |- +++++.+ + +
T Consensus 2 ~~~~~~~rR~~l~~~~~~~~--~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~e------p~--~~lv~~~~~~~~~~ 71 (438)
T PRK10879 2 TQQEFQRRRQALLAKMQPGS--AALIFAAPEATRSADSEYPYRQNSDFWYFTGFNE------PE--AVLVLIKSDDTHNH 71 (438)
T ss_pred ChHHHHHHHHHHHhhCCCCc--EEEEeCCCccccCCCCCCCccCCCceeeeeCCCC------CC--eEEEEecCCCCCCe
Confidence 34689999999999997632 4555442 36999999863 32 4555522 2 3
Q ss_pred eEEEEeCCCCCH--------HHHHHhhcCCe-EEEeCCchHHHHHHHHhccCCCCCCCCCCCEEEEcCCCC------cHH
Q 007222 208 AFLYVDKRKVSS--------EVISFLKESGV-EVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSC------SYA 272 (612)
Q Consensus 208 ~~L~~~~~~~~~--------~~~~~l~~~~v-~v~~y~~~~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~~------~~~ 272 (612)
.+||++...-.. ...+.....++ ++.+++++.+.|..+.. +...+..+.+.. ...
T Consensus 72 ~~Lf~~~~d~~~e~W~G~~~~~~~a~~~~g~d~v~~~~~l~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 141 (438)
T PRK10879 72 SVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQQLYQLLN----------GLDVVYHAQGEYAYADEIVFS 141 (438)
T ss_pred EEEEeCCCCCCccEEcCcCCCHHHHHHHhCCCEEeeHHHHHHHHHHHhc----------CCceEEecCCccccchhHHHH
Confidence 578987643221 11111122445 58888888888887664 123344432221 112
Q ss_pred HHHhcc---------cCceeecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccc
Q 007222 273 LYSKLN---------SDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATK 343 (612)
Q Consensus 273 ~~~~L~---------~~~~~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (612)
....+. ...++|+.+.+.++|+|||++||+.||+|+++++.++.++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~---------------------- 199 (438)
T PRK10879 142 ALEKLRKGSRQNLTAPATLTDWRPWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEK---------------------- 199 (438)
T ss_pred HHHHHHhhhccccCCcccchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 222221 1246688889999999999999999999999999999987764
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccce
Q 007222 344 EKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDI 423 (612)
Q Consensus 344 ~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~ 423 (612)
+++|+||.|+++.+... ....|...++|++++++|+|++.+||.|++ ++|++||+|++|+|+.|+||++|+
T Consensus 200 -----~~pG~tE~ei~a~~~~~-~~~~G~~~~~~~~iv~~G~na~~~H~~~~~---~~l~~GDlVliD~G~~~~GY~sDi 270 (438)
T PRK10879 200 -----CRPGMFEYQLEGEIHHE-FNRHGARYPSYNTIVGSGENGCILHYTENE---SEMRDGDLVLIDAGCEYKGYAGDI 270 (438)
T ss_pred -----cCCCCcHHHHHHHHHHH-HHHCCCCCCCCCcEEEEcCccccccCCCCc---cccCCCCEEEEEeCeEECCEEEEe
Confidence 58999999999998874 445777778999999999999999999976 899999999999999999999999
Q ss_pred Eeeeec-CCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH------------------HcCC--CCCCC
Q 007222 424 TRTFHF-GKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLW------------------KYGL--DYRHG 482 (612)
Q Consensus 424 tRT~~~-G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~------------------~~G~--~~~h~ 482 (612)
||||++ |+++++|+++|+++++++.++++++|| |+++++|+.++++++. +.++ .+.|+
T Consensus 271 tRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~kp-G~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg 349 (438)
T PRK10879 271 TRTFPVNGKFTPAQREIYDIVLESLETSLRLYRP-GTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHG 349 (438)
T ss_pred EEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCC
Confidence 999998 899999999999999999999999999 9999999999986653 3344 57999
Q ss_pred CCcccCCCCcccCCCCCCCCCCCCcccccCCeEeecccceecC---------cceEEEeeeeEEeeCCCcccCCCCcccc
Q 007222 483 TGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDG---------NFGIRLENVLVVTDANTKFNFGDKGYLS 553 (612)
Q Consensus 483 ~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g---------~~gvriEd~v~Vt~~~~~~~~~~~~~~g 553 (612)
+||+|| |++||.|. +..+ ++.+|+||||||||||+|.+. .+|+|+||+|+||++ |
T Consensus 350 ~GH~iG--ldvHd~~~-~~~~-~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT~~------------G 413 (438)
T PRK10879 350 LSHWLG--LDVHDVGV-YGQD-RSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVITET------------G 413 (438)
T ss_pred CccccC--cCcCcCCC-cCCC-CCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEECCC------------c
Confidence 999999 99999987 5444 678999999999999999863 269999999999999 9
Q ss_pred ceeccc-CcccC
Q 007222 554 FEHITW-APYQI 564 (612)
Q Consensus 554 ~e~LT~-~P~~~ 564 (612)
+|+||. +|++.
T Consensus 414 ~e~LT~~~pk~~ 425 (438)
T PRK10879 414 NENLTASVVKKP 425 (438)
T ss_pred CeEcCccCCCCH
Confidence 999995 89544
No 8
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=1.3e-49 Score=418.09 Aligned_cols=263 Identities=21% Similarity=0.224 Sum_probs=233.0
Q ss_pred CCCCEEEEcCCCCcHHHHHhcc----cCceeecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007222 257 QGSDLIWADPNSCSYALYSKLN----SDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGA 332 (612)
Q Consensus 257 ~~~~~ig~d~~~~~~~~~~~L~----~~~~~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~ 332 (612)
+..++||+|.+.+++..++.|. ..+++|+++++.++|+|||++||+.||+|++++++++..+.+.
T Consensus 53 ~~~~rigve~~~~~~~~~~~l~~~l~~~~~~d~~~~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~----------- 121 (323)
T PRK15173 53 VLNKKIAIDLNIMSNGGKRVIDAVMPNVDFVDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKL----------- 121 (323)
T ss_pred ccCCEEEEecCccCHHHHHHHHhhCCCCeEEEhHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4578999999888888777664 4578999999999999999999999999999999999887654
Q ss_pred cCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEee
Q 007222 333 SGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDS 412 (612)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~ 412 (612)
+++|+||.|+++.+..... ..|....++.+++++|++. .+|+.|++ +++++||+|++|+
T Consensus 122 ----------------i~~G~tE~el~a~~~~~~~-~~g~~~~~~~~~i~~G~~~-~~h~~~~~---~~l~~Gd~V~iD~ 180 (323)
T PRK15173 122 ----------------IRVGCTSAELTAAYKAAVM-SKSETHFSRFHLISVGADF-SPKLIPSN---TKACSGDLIKFDC 180 (323)
T ss_pred ----------------ccCCCCHHHHHHHHHHHHH-HcCCCCCCCCcEEEECCCC-ccCCCCCC---CccCCCCEEEEEe
Confidence 5799999999999976433 3444333444678889874 58988876 8999999999999
Q ss_pred cceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCC--CCCCCCCcccCCC
Q 007222 413 GAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSY 490 (612)
Q Consensus 413 g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~--~~~h~~GHgiG~~ 490 (612)
|++|+||++|+||||++|+|+++|+++|++++++++++++++|| |+++++|+.++++++++.|+ .+.|++|||||.+
T Consensus 181 g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irP-G~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~ 259 (323)
T PRK15173 181 GVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAP-GVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVF 259 (323)
T ss_pred CccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHcCCccccCCCCCCcCCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999 3678999999977
Q ss_pred CcccCCCCCCCCCCCCcccccCCeEeecccceecCcceEEEeeeeEEeeCCCcccCCCCccccceecccCcccCCccc
Q 007222 491 LNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIKMIN 568 (612)
Q Consensus 491 l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~~P~~~~li~ 568 (612)
+++||.|. +..+ ++.+|+|||||++|||+|.++.+|+|+||+|+||++ |+|.||..| ++|+.
T Consensus 260 lg~~E~P~-i~~~-~~~~Le~GMV~tiEPgiy~~g~ggvriEDtvlVTe~------------G~e~LT~~p--~~l~~ 321 (323)
T PRK15173 260 LGLEESPF-VSTH-ATESFTSGMVLSLETPYYGYNLGSIMIEDMILINKE------------GIEFLSKLP--RDLVS 321 (323)
T ss_pred CCcCCCCC-CCCC-CCCccCCCCEEEECCEEEcCCCcEEEEeeEEEEcCC------------cceeCCCCC--cccee
Confidence 79999998 5555 788999999999999999999999999999999999 999999999 55543
No 9
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=3.2e-45 Score=371.88 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=199.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 007222 294 AIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFR 373 (612)
Q Consensus 294 ~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~ 373 (612)
.||||+||+.||+|++++++++..+.+. +++|+||.|+++.++.. +...|..
T Consensus 3 ~iKs~~EI~~~r~A~~i~~~~~~~~~~~---------------------------~~~G~tE~el~~~~~~~-~~~~G~~ 54 (248)
T PRK12897 3 TIKTKNEIDLMHESGKLLASCHREIAKI---------------------------MKPGITTKEINTFVEAY-LEKHGAT 54 (248)
T ss_pred eeCCHHHHHHHHHHHHHHHHHHHHHHhh---------------------------cCCCCcHHHHHHHHHHH-HHHcCCc
Confidence 6999999999999999999999887654 58999999999999875 4456654
Q ss_pred -----CCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHH
Q 007222 374 -----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHI 448 (612)
Q Consensus 374 -----~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~ 448 (612)
..+|++++++|+|++.+|+.|++ ++|++||+|++|+|+.|+||++|++|||++|+|+++|+++|+.++++++
T Consensus 55 ~~~~~~~~~~~~i~~g~n~~~~H~~p~~---~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~ 131 (248)
T PRK12897 55 SEQKGYNGYPYAICASVNDEMCHAFPAD---VPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALY 131 (248)
T ss_pred ccccccCCCCcceEeccCCEeecCCCCC---cccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 24788889999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCCCC-C-CCcccccCCeEeecccce---
Q 007222 449 ALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFK-P-RNVPIHASMTATDEPGYY--- 522 (612)
Q Consensus 449 ~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~~~-~-~~~~l~~gmv~~iEPg~y--- 522 (612)
+++++++| |+++++|+.++++++++.|+. +.|++||||| +++||.|...... + ++.+|+|||||++||++|
T Consensus 132 ~~i~~~kp-G~~~~dv~~a~~~~~~~~g~~~~~~~~GHgiG--l~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~~~~ 208 (248)
T PRK12897 132 KGIDQAVI-GNRVGDIGYAIESYVANEGFSVARDFTGHGIG--KEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVGM 208 (248)
T ss_pred HHHHhhcC-CCccchHHHHHHHHHHHcCCccCCCeEECccC--CcccCCCccCCCCCCCCCCCcCCCCEEEECCeEecCC
Confidence 99999999 999999999999999999994 6899999999 9999999843211 1 577999999999999999
Q ss_pred --------------ecCcceEEEeeeeEEeeCCCcccCCCCccccceeccc
Q 007222 523 --------------EDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 523 --------------~~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~ 559 (612)
.+|.+|+|+||+|+||++ |+|+||.
T Consensus 209 ~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~~------------G~e~lt~ 247 (248)
T PRK12897 209 RYSKVDLNGWTARTMDGKLSAQYEHTIAITKD------------GPIILTK 247 (248)
T ss_pred CceEECCCCcEEEcCCCCeEeecceEEEEeCC------------ccEEeec
Confidence 367789999999999999 9999995
No 10
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=1.2e-44 Score=394.10 Aligned_cols=229 Identities=25% Similarity=0.293 Sum_probs=198.4
Q ss_pred eecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHH
Q 007222 283 LLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKL 362 (612)
Q Consensus 283 ~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l 362 (612)
.++...+.++|+|||++||+.||+|++++.+++..+++. +++|+||.|+++.+
T Consensus 149 ~~l~~~l~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~---------------------------i~pG~tE~ei~~~~ 201 (443)
T PRK13607 149 KGVLDYLHYHRAYKTDYELACMREAQKIAVAGHRAAKEA---------------------------FRAGMSEFDINLAY 201 (443)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhcCCCHHHHHHHH
Confidence 456778899999999999999999999999999887654 47999999999876
Q ss_pred HHHHHHhCCCCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHH
Q 007222 363 ESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTA 442 (612)
Q Consensus 363 ~~~~~~~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~ 442 (612)
.. ....+....+|++|+++|+|++++||.|++ ++++++||+|++|+|+.|+||++|+||||+ |+++++++++|++
T Consensus 202 ~~--~~~~~~~~~~y~~iva~G~naa~~H~~~~~--~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~ 276 (443)
T PRK13607 202 LT--ATGQRDNDVPYGNIVALNEHAAVLHYTKLD--HQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKD 276 (443)
T ss_pred HH--HhCCCCcCCCCCcEEEecCcceEecCCccC--CCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHH
Confidence 53 223444567899999999999999999875 246899999999999999999999999999 8899999999999
Q ss_pred HHHHHHHHHhccCCCCCchhHHHHHHHHHHHH------------------cCC---CCCCCCCcccCCCCcccCCCCCC-
Q 007222 443 VLKGHIALGNAVFPNGTCGHTLDILARLPLWK------------------YGL---DYRHGTGHGVGSYLNVHEGPQSI- 500 (612)
Q Consensus 443 ~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~------------------~G~---~~~h~~GHgiG~~l~~hE~P~~i- 500 (612)
+++|++++++++|| |+++++|+.++++++.+ .|+ .|.|++||||| |++||.+...
T Consensus 277 v~~aq~aai~~ikP-G~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iG--ldvHd~~~~~~ 353 (443)
T PRK13607 277 VNKEQLALIATMKP-GVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLG--LQVHDVAGFMQ 353 (443)
T ss_pred HHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccC--cccccCCCccc
Confidence 99999999999999 99999999999876642 243 47899999999 9999975310
Q ss_pred --------------CCCCCCcccccCCeEeecccceecC-------------------------cceEEEeeeeEEeeCC
Q 007222 501 --------------SFKPRNVPIHASMTATDEPGYYEDG-------------------------NFGIRLENVLVVTDAN 541 (612)
Q Consensus 501 --------------~~~~~~~~l~~gmv~~iEPg~y~~g-------------------------~~gvriEd~v~Vt~~~ 541 (612)
+.+ ...+|+||||||||||+|+++ .|||||||+|+||++
T Consensus 354 ~~~~~~~~~~~~~~~l~-~~~~L~~GmV~TvEPGiY~~~~ll~~~~~~~~~~~in~~~i~~~~~~GGvRIED~vlVT~~- 431 (443)
T PRK13607 354 DDRGTHLAAPEKHPYLR-CTRVLEPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHEN- 431 (443)
T ss_pred ccccccccccccccccc-cCCcCCCCcEEEECCeeeeChhhhchhhhhhhhhhccHHHHHhhcCCCEEeecceEEEcCC-
Confidence 012 457999999999999999974 679999999999999
Q ss_pred CcccCCCCccccceeccc
Q 007222 542 TKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 542 ~~~~~~~~~~~g~e~LT~ 559 (612)
|+|+||.
T Consensus 432 -----------G~e~Lt~ 438 (443)
T PRK13607 432 -----------GVENMTR 438 (443)
T ss_pred -----------CCeECCh
Confidence 9999995
No 11
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.1e-44 Score=372.81 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=200.7
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Q 007222 292 AKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEH 371 (612)
Q Consensus 292 lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g 371 (612)
|..|||++||+.||+|++++.+++..+.+. ++||+||.||++.+++.. ...|
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~---------------------------i~pG~te~ei~~~~~~~~-~~~g 52 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDL---------------------------IKPGVDMWEVEEYVRRRC-KEEN 52 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------CcCCCcHHHHHHHHHHHH-HHcC
Confidence 347999999999999999999998876654 589999999999998753 3333
Q ss_pred C-------C--CCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecc---------------------------e
Q 007222 372 F-------R--GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGA---------------------------Q 415 (612)
Q Consensus 372 ~-------~--~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~---------------------------~ 415 (612)
+ . ..+|++++++|.|++.+|+.|++ ++|++||+|++|+|+ .
T Consensus 53 ~~~~~~G~~~~~~~f~~~v~~G~n~~~~H~~p~~---~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~ 129 (286)
T PRK07281 53 VLPLQIGVDGAMMDYPYATCCGLNDEVAHAFPRH---YILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTES 129 (286)
T ss_pred CcccccCCCCcccCCCcceEEeccccccCCCCCC---cCcCCCCEEEEEecccccccccccccccccccccccccccccc
Confidence 2 2 26799999999999999999986 999999999999997 4
Q ss_pred eCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCccc
Q 007222 416 YQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVH 494 (612)
Q Consensus 416 ~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~h 494 (612)
|+||++|+||||++|+|+++|+++|+++++++.++++++|| |+++++|+.++++++++.|+. +.|++||||| +++|
T Consensus 130 ~~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kp-G~~~~di~~a~~~~~~~~G~~~~~~~~GHGIG--l~~h 206 (286)
T PRK07281 130 YRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVV-GNRIGDIGAAIQEYAESRGYGVVRDLVGHGVG--PTMH 206 (286)
T ss_pred cCCEEeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCccCCCeeeeeCC--CccC
Confidence 89999999999999999999999999999999999999999 999999999999999999994 7799999999 9999
Q ss_pred CCCCCCC---CCCCCcccccCCeEeeccccee------------------cCcceEEEeeeeEEeeCCCcccCCCCcccc
Q 007222 495 EGPQSIS---FKPRNVPIHASMTATDEPGYYE------------------DGNFGIRLENVLVVTDANTKFNFGDKGYLS 553 (612)
Q Consensus 495 E~P~~i~---~~~~~~~l~~gmv~~iEPg~y~------------------~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g 553 (612)
|.|.... .+ ++.+|+|||||+|||++|. ||.+|+|+||+|+||++ |
T Consensus 207 E~P~i~~~~~~~-~~~~Le~GMV~tiEPgiy~~~~~~~~~~~~gw~~~~~~g~~gvr~EdtvlVT~~------------G 273 (286)
T PRK07281 207 EEPMVPNYGTAG-RGLRLREGMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKD------------G 273 (286)
T ss_pred CCCcCCCcccCC-CCCEECCCCEEEECCeeEcCCcceecccCCCceEEecCCCcEEEeccEEEEeCC------------c
Confidence 9997321 23 6789999999999999985 45668999999999999 9
Q ss_pred ceecccCcccC
Q 007222 554 FEHITWAPYQI 564 (612)
Q Consensus 554 ~e~LT~~P~~~ 564 (612)
+|+||..+.++
T Consensus 274 ~e~LT~~~~~~ 284 (286)
T PRK07281 274 PVILTSQGEER 284 (286)
T ss_pred ceECCCCCccc
Confidence 99999888554
No 12
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1e-43 Score=367.51 Aligned_cols=229 Identities=19% Similarity=0.200 Sum_probs=200.7
Q ss_pred Cccchhhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHH
Q 007222 287 SPLALAKA-IKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESF 365 (612)
Q Consensus 287 ~~v~~lR~-iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~ 365 (612)
+.+.++|. |||++||+.||+|++++++++.++++. +++|+||.|+++.+++.
T Consensus 34 ~~~~~~~i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~---------------------------irpG~tE~Eiaa~~~~~ 86 (291)
T PRK12318 34 LYASQYDIIIKTPEQIEKIRKACQVTARILDALCEA---------------------------AKEGVTTNELDELSREL 86 (291)
T ss_pred hccCCCceEECCHHHHHHHHHHHHHHHHHHHHHHHh---------------------------ccCCCCHHHHHHHHHHH
Confidence 34455665 999999999999999999999887654 58999999999887764
Q ss_pred HHHhCCC-------CCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHH
Q 007222 366 RASKEHF-------RGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKA 438 (612)
Q Consensus 366 ~~~~~g~-------~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~ 438 (612)
....|. .+.+|++++++|.|+.++|+.|++ ++|++||+|++|+|+.|+||++|++|||++|+|+++|++
T Consensus 87 -~~~~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~p~~---~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~ 162 (291)
T PRK12318 87 -HKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGIPND---IPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKK 162 (291)
T ss_pred -HHHcCCCccccccCCCCCCcceEeeccceeecCCCCC---CccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHH
Confidence 333443 235788999999999999999976 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCCCCC-CCcccccCCeEe
Q 007222 439 CYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKP-RNVPIHASMTAT 516 (612)
Q Consensus 439 ~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~~~~-~~~~l~~gmv~~ 516 (612)
+|++++++++++++++|| |+++++|+.++++++++.|+. ..|.+||||| +++||.|......+ ++.+|+|||||+
T Consensus 163 ~~~~~~~a~~~~i~~~rp-G~~~~dv~~a~~~~~~~~G~~~~~~~~GHgIG--l~~hE~P~i~~~~~~~~~~L~~GMV~~ 239 (291)
T PRK12318 163 VCQASLECLNAAIAILKP-GIPLYEIGEVIENCADKYGFSVVDQFVGHGVG--IKFHENPYVPHHRNSSKIPLAPGMIFT 239 (291)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCccCCCcccCCcC--ccccCCCcccCcCCCCCCEeCCCCEEE
Confidence 999999999999999999 999999999999999999995 5789999999 99999998433221 568999999999
Q ss_pred ecccceecCcc---------e---------EEEeeeeEEeeCCCcccCCCCccccceecccCc
Q 007222 517 DEPGYYEDGNF---------G---------IRLENVLVVTDANTKFNFGDKGYLSFEHITWAP 561 (612)
Q Consensus 517 iEPg~y~~g~~---------g---------vriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~~P 561 (612)
+||++|.++.+ | +++||+|+||++ |+|.||.+|
T Consensus 240 iEP~i~~~~~~g~~~~~~~~~~~~~~g~~~~~~edtv~VTe~------------G~e~LT~~~ 290 (291)
T PRK12318 240 IEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTILITET------------GYEILTLLD 290 (291)
T ss_pred ECCEEEcCCCceEEecCCCcEEEecCCCeeeeeeeEEEEcCC------------cceeCCCCC
Confidence 99999987433 3 347999999999 999999988
No 13
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=3.7e-43 Score=356.59 Aligned_cols=219 Identities=21% Similarity=0.255 Sum_probs=196.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 007222 294 AIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFR 373 (612)
Q Consensus 294 ~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~ 373 (612)
+|||++||+.||+|++++++++..+++. +++|+||.|+++.+++. +...|..
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~---------------------------i~~G~tE~el~~~~~~~-~~~~G~~ 53 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELERE---------------------------VKPGVSTKELDRIAKDF-IEKHGAK 53 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHh---------------------------ccCCCCHHHHHHHHHHH-HHHCCCC
Confidence 6999999999999999999999887653 58999999999999874 4455643
Q ss_pred C-----CCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHH
Q 007222 374 G-----LSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHI 448 (612)
Q Consensus 374 ~-----~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~ 448 (612)
. .+|++++++|+|++.+|+.|++ ++|++||+|++|+|+.|+||++|++|||++|+|+++|+++|++++++++
T Consensus 54 ~~~~~~~~~~~~~~~~~n~~~~H~~~~~---~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~ 130 (247)
T TIGR00500 54 PAFLGYYGFPGSVCISVNEVVIHGIPDK---KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLY 130 (247)
T ss_pred ccccCCCCCCceeEeccccEEEecCCCC---cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 2 3577889999999999999986 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCC---CCCCCcccccCCeEeecccceec
Q 007222 449 ALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSIS---FKPRNVPIHASMTATDEPGYYED 524 (612)
Q Consensus 449 ~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~---~~~~~~~l~~gmv~~iEPg~y~~ 524 (612)
++++++|| |+++++|+.++++++.+.|+. +.|.+||||| +.+||.|.... .. ++.+|++||||++||++|.+
T Consensus 131 ~~~~~~kp-G~~~~~v~~~~~~~~~~~g~~~~~~~~GHgiG--~~~~e~p~i~~~~~~~-~~~~l~~gmv~~iEp~i~~~ 206 (247)
T TIGR00500 131 KAIEEAKP-GNRIGEIGAAIQKYAEAKGFSVVREYCGHGIG--RKFHEEPQIPNYGKKF-TNVRLKEGMVFTIEPMVNTG 206 (247)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHcCCEeccCccCCccC--cccCCCCccCCcCcCC-CCCEecCCCEEEEeeEEEcC
Confidence 99999999 999999999999999999994 6788999999 99999996322 22 58899999999999999973
Q ss_pred -----------------CcceEEEeeeeEEeeCCCcccCCCCccccceeccc
Q 007222 525 -----------------GNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 525 -----------------g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~ 559 (612)
+.+|+|+||+|+||++ |+|+||.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~~------------G~e~Lt~ 246 (247)
T TIGR00500 207 TEEITTAADGWTVKTKDGSLSAQFEHTIVITDN------------GPEILTE 246 (247)
T ss_pred CCcEEECCCCCEEEccCCCeEEEEeEEEEEcCC------------ccEEccC
Confidence 5679999999999999 9999984
No 14
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=7.2e-43 Score=355.43 Aligned_cols=224 Identities=21% Similarity=0.198 Sum_probs=201.0
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Q 007222 292 AKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEH 371 (612)
Q Consensus 292 lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g 371 (612)
+-+|||++||+.||+|+++++.++..+++. +++|+||.|+++.+.+. ....|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~---------------------------i~pG~se~ela~~~~~~-~~~~G 53 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPH---------------------------VKPGVTTKELDRIAEEY-IRDQG 53 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------ccCCCCHHHHHHHHHHH-HHHCC
Confidence 347999999999999999999999877654 58999999999998774 34455
Q ss_pred CC-----CCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHH
Q 007222 372 FR-----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKG 446 (612)
Q Consensus 372 ~~-----~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a 446 (612)
.. ..+|++++++|.|+..+|+.|++ ++|++||+|++|+|+.|+||++|++||+++|+|+++|+++|++++++
T Consensus 54 ~~~~~~~~~~~~~~~~~g~~~~~~h~~~~~---~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~ 130 (252)
T PRK05716 54 AIPAPLGYHGFPKSICTSVNEVVCHGIPSD---KVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEA 130 (252)
T ss_pred CEecccCCCCCCcCeEecccceeecCCCCC---cccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHH
Confidence 42 24677888999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCC---CCCCCcccccCCeEeecccce
Q 007222 447 HIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSIS---FKPRNVPIHASMTATDEPGYY 522 (612)
Q Consensus 447 ~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~---~~~~~~~l~~gmv~~iEPg~y 522 (612)
+.++++++|| |+++++|++++++.++++|+. ..|.+||||| +.+||.|.... .. ++.+|+|||||++||++|
T Consensus 131 ~~~~~~~~~p-G~~~~dv~~~~~~~~~~~g~~~~~~~~GHgiG--~~~~e~p~~~~~~~~~-~~~~le~Gmv~~vEp~i~ 206 (252)
T PRK05716 131 LYLGIAAVKP-GARLGDIGHAIQKYAEAEGFSVVREYCGHGIG--RKFHEEPQIPHYGAPG-DGPVLKEGMVFTIEPMIN 206 (252)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCeeecCccccccC--CccCCCCccCcCCCCC-CCCEecCCCEEEEccEEE
Confidence 9999999999 999999999999999999995 5788999999 99999997432 23 788999999999999998
Q ss_pred e-----------------cCcceEEEeeeeEEeeCCCcccCCCCccccceecccCcc
Q 007222 523 E-----------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPY 562 (612)
Q Consensus 523 ~-----------------~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~~P~ 562 (612)
. +|.+|+|+||+|+||++ |+|+||..|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~~------------G~e~Lt~~~~ 251 (252)
T PRK05716 207 AGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTED------------GPEILTLRPE 251 (252)
T ss_pred cCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcCC------------ccEEeeCCCC
Confidence 6 67789999999999999 9999999984
No 15
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=2.4e-42 Score=346.11 Aligned_cols=212 Identities=16% Similarity=0.072 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---
Q 007222 301 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSF--- 377 (612)
Q Consensus 301 I~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f--- 377 (612)
|++||+|++++++++..+++. ++||+||.|+++.+.+. +...|+.+.++
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~---------------------------i~pG~tE~ei~a~~~~~-~~~~ga~~~~~~~~ 52 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEA---------------------------IREGVPEYEVALAGTQA-MVREIAKTFPEVEL 52 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---------------------------hcCCCCHHHHHHHHHHH-HHHcCCccCCcccc
Confidence 689999999999999987754 58999999999998764 44455433222
Q ss_pred ---CeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 007222 378 ---PTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAV 454 (612)
Q Consensus 378 ---~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~ 454 (612)
.+++++|+|++.+|+.|++ +++++||+|++|+|+.|+||++|++|||++|+|+++|+++|+++.++++++++++
T Consensus 53 ~~~~~~v~~G~~~~~~H~~~~~---r~l~~GD~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~ 129 (228)
T cd01090 53 MDTWTWFQSGINTDGAHNPVTN---RKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELI 129 (228)
T ss_pred cCcceEEEeeccccccCCCCCC---cccCCCCEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3689999999999999876 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHcCC--CCCCCCCcccCCCCcccCCCCC----CCCCCCCcccccCCeEeecccceec----
Q 007222 455 FPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQS----ISFKPRNVPIHASMTATDEPGYYED---- 524 (612)
Q Consensus 455 ~P~G~~~~~v~~~~~~~~~~~G~--~~~h~~GHgiG~~l~~hE~P~~----i~~~~~~~~l~~gmv~~iEPg~y~~---- 524 (612)
|| |+++++|+++++++++++|+ .+.|++||||| +.+||.|.. +... ++.+|+|||||++||++|.+
T Consensus 130 rp-G~~~~~v~~a~~~~~~~~G~~~~~~~~~GHgiG--l~~he~~~~~g~~~~~~-~~~~Le~GMV~~iEP~i~~~~~~~ 205 (228)
T cd01090 130 KP-GARCKDIAAELNEMYREHDLLRYRTFGYGHSFG--VLSHYYGREAGLELRED-IDTVLEPGMVVSMEPMIMLPEGQP 205 (228)
T ss_pred CC-CCcHHHHHHHHHHHHHHcCCCcccccccCcccc--cccccCCCccccccCCC-CCCccCCCCEEEECCEEeecccCC
Confidence 99 99999999999999999999 46899999999 999998742 3334 67899999999999999984
Q ss_pred CcceEEEeeeeEEeeCCCcccCCCCccccceeccc
Q 007222 525 GNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 525 g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~ 559 (612)
|.+|+|+||+|+||++ |+|+||.
T Consensus 206 g~gG~ried~v~Vt~~------------G~e~Lt~ 228 (228)
T cd01090 206 GAGGYREHDILVINEN------------GAENITG 228 (228)
T ss_pred CCcEEEeeeEEEECCC------------ccccCcC
Confidence 7899999999999999 9999983
No 16
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=4.3e-42 Score=350.36 Aligned_cols=222 Identities=22% Similarity=0.160 Sum_probs=199.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Q 007222 291 LAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKE 370 (612)
Q Consensus 291 ~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~ 370 (612)
++++|||++||+.||+|++++++++..+++. ++||+||.|+++.+.+. +...
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~---------------------------i~pG~te~el~~~~~~~-~~~~ 57 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKA---------------------------VEPGMTTKELDRIAEKR-LEEH 57 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhh---------------------------ccCCCCHHHHHHHHHHH-HHHC
Confidence 4568999999999999999999999887654 58999999999999874 4455
Q ss_pred CCC-----CCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHH
Q 007222 371 HFR-----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLK 445 (612)
Q Consensus 371 g~~-----~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~ 445 (612)
|.. ...|++++++|.|...+|+.|++ ++|++||+|++|+|+.|+||++|++|||++|+|+++++++|+++++
T Consensus 58 G~~~~~~~~~~~~~~~~~~~n~~~~h~~p~~---~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~ 134 (255)
T PRK12896 58 GAIPSPEGYYGFPGSTCISVNEEVAHGIPGP---RVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEE 134 (255)
T ss_pred CCEeCcccCCCCCcceEecCCCeeEecCCCC---ccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHH
Confidence 553 24577888899999999999976 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCC----CCCCCcccccCCeEeeccc
Q 007222 446 GHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSIS----FKPRNVPIHASMTATDEPG 520 (612)
Q Consensus 446 a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~----~~~~~~~l~~gmv~~iEPg 520 (612)
++.++++++|| |+++++|+.++++++.+.|+. +.|.+||||| +.+||.|..+. .. ++.+|++||||++||+
T Consensus 135 a~~~~~~~~kp-G~~~~~v~~~~~~~~~~~G~~~~~~~~GHgiG--~~~he~p~~~~~~~~~~-~~~~le~GmV~~iEp~ 210 (255)
T PRK12896 135 ALWAGIKQVKA-GRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVG--RSLHEEPSVILTYTDPL-PNRLLRPGMTLAVEPF 210 (255)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCEeccCcccCCcC--cccccCCCccccCCCCC-CCCEecCCcEEEEece
Confidence 99999999999 999999999999999999994 6789999999 99999996443 23 6789999999999999
Q ss_pred ce-----------------ecCcceEEEeeeeEEeeCCCcccCCCCccccceeccc
Q 007222 521 YY-----------------EDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 521 ~y-----------------~~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~ 559 (612)
+| .++.+|+|+||+|+||++ |+|+||.
T Consensus 211 i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~~------------G~e~Lt~ 254 (255)
T PRK12896 211 LNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRD------------GPEILTD 254 (255)
T ss_pred EEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcCC------------cceecCC
Confidence 98 467889999999999999 9999984
No 17
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=7.5e-42 Score=341.26 Aligned_cols=213 Identities=57% Similarity=1.020 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCeEE
Q 007222 304 LKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVK--LTEVTVSDKLESFRASKEHFRGLSFPTIS 381 (612)
Q Consensus 304 ~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~tE~ev~~~l~~~~~~~~g~~~~~f~~iv 381 (612)
||.|+..+.+.+.+.++++.+. +++| +||.||++.++++.....++.+.+|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-----------------------i~~G~~~tE~eiaa~~~~~~~~~g~~~~~~f~~~v 58 (224)
T cd01085 2 MRAAHIRDGVALVEFLAWLEQE-----------------------VPKGETITELSAADKLEEFRRQQKGYVGLSFDTIS 58 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-----------------------hccCCCEeHHHHHHHHHHHHHHcCCCcCCCcceEE
Confidence 6778777777777777777654 5799 99999999999865444455567899999
Q ss_pred EecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccC-CCCCc
Q 007222 382 SVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVF-PNGTC 460 (612)
Q Consensus 382 ~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~-P~G~~ 460 (612)
++|+|++.+|+.|+..++++|++||+|++|+|+.|+||++|++|||++|+|+++|+++|+.++++++++++.++ | |++
T Consensus 59 ~~g~n~~~~H~~p~~~~~r~l~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 137 (224)
T cd01085 59 GFGPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPK-GTT 137 (224)
T ss_pred EecCccCcCCCCcCcccCcccCCCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCC
Confidence 99999999999998333499999999999999999999999999999999999999999999999999999885 6 999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCcccCCCCcccCCCCCC-CCCCCCcccccCCeEeecccceecCcceEEEeeeeEEee
Q 007222 461 GHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSI-SFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 539 (612)
Q Consensus 461 ~~~v~~~~~~~~~~~G~~~~h~~GHgiG~~l~~hE~P~~i-~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~ 539 (612)
++++++++++.+.+.|+.|.|++|||||.++++||.|..+ ..+ ++.+|+|||||++||++|.+|.+|+|+||+|+||+
T Consensus 138 ~~~v~~~~~~~~~~~g~~~~h~~GHgIG~~l~~hE~P~i~~~~~-~~~~L~~GmvftiEP~iy~~g~~gvried~v~Vt~ 216 (224)
T cd01085 138 GSQLDALARQPLWKAGLDYGHGTGHGVGSFLNVHEGPQSISPAP-NNVPLKAGMILSNEPGYYKEGKYGIRIENLVLVVE 216 (224)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCCCCCCcCCcCC-CCCCcCCCCEEEECCEeEeCCCeEEEeeEEEEEee
Confidence 9999999999999999999999999999666889999844 455 78899999999999999999999999999999999
Q ss_pred CC
Q 007222 540 AN 541 (612)
Q Consensus 540 ~~ 541 (612)
+|
T Consensus 217 ~G 218 (224)
T cd01085 217 AE 218 (224)
T ss_pred CC
Confidence 94
No 18
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=6e-42 Score=346.89 Aligned_cols=211 Identities=30% Similarity=0.385 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeE
Q 007222 301 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTI 380 (612)
Q Consensus 301 I~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~i 380 (612)
|++||+|++++++++.++.+. ++||+||.|+++.+++. ....|.. ++|+++
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~---------------------------i~pG~tE~ei~~~~~~~-~~~~G~~-~~~~~~ 51 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKA---------------------------SRPGMSEYELEAEFEYE-FRSRGAR-LAYSYI 51 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---------------------------CcCCCcHHHHHHHHHHH-HHHcCCC-cCCCCe
Confidence 689999999999999887654 58999999999999875 4456655 678999
Q ss_pred EEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeec-CCCCHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007222 381 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSAHEKACYTAVLKGHIALGNAVFPNGT 459 (612)
Q Consensus 381 v~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~-G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~ 459 (612)
+++|+|++.+|+.|++ ++|++||+|++|+|+.|+||++|++|||++ |+|+++|+++|++++++++++++++|| |+
T Consensus 52 v~~g~~~~~~H~~~~~---~~l~~Gd~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rp-G~ 127 (243)
T cd01087 52 VAAGSNAAILHYVHND---QPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKP-GV 127 (243)
T ss_pred EEECCCccccCCCcCC---CcCCCCCEEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCC-CC
Confidence 9999999999999976 899999999999999999999999999999 689999999999999999999999999 99
Q ss_pred chhHHHHHHHHHHHHcCC--------------------CCCCCCCcccCCCCcccCCCCC-CCCCCCCcccccCCeEeec
Q 007222 460 CGHTLDILARLPLWKYGL--------------------DYRHGTGHGVGSYLNVHEGPQS-ISFKPRNVPIHASMTATDE 518 (612)
Q Consensus 460 ~~~~v~~~~~~~~~~~G~--------------------~~~h~~GHgiG~~l~~hE~P~~-i~~~~~~~~l~~gmv~~iE 518 (612)
++++|+.++++++++.|+ .+.|++||||| +++||.|.. ...+ ++.+|++||||++|
T Consensus 128 ~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiG--l~~~e~p~~~~~~~-~~~~l~~GMv~~iE 204 (243)
T cd01087 128 SYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLG--LDVHDVGGYLRYLR-RARPLEPGMVITIE 204 (243)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccC--cccccCccccccCC-CCCCCCCCCEEEEC
Confidence 999999999999986531 46899999999 999999973 1455 78999999999999
Q ss_pred ccceecC----------cceEEEeeeeEEeeCCCcccCCCCccccceeccc
Q 007222 519 PGYYEDG----------NFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 519 Pg~y~~g----------~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~ 559 (612)
|++|.++ .+|+|+||+|+||++ |+|.||.
T Consensus 205 p~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~~------------G~e~Lt~ 243 (243)
T cd01087 205 PGIYFIPDLLDVPEYFRGGGIRIEDDVLVTED------------GPENLTR 243 (243)
T ss_pred CEEEeCCcccccccccceeEEEeeeEEEEcCC------------cceeCcC
Confidence 9999997 789999999999999 9999984
No 19
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=2.7e-41 Score=360.39 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=203.9
Q ss_pred ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHH
Q 007222 288 PLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRA 367 (612)
Q Consensus 288 ~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~ 367 (612)
.+.+.|.|||++||+.||+|++++.+++..+.+. +++|+||.||++.+++...
T Consensus 130 ~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~---------------------------irpGvTe~EI~~~v~~~~~ 182 (396)
T PLN03158 130 DLQHSVEIKTPEQIQRMRETCRIAREVLDAAARA---------------------------IKPGVTTDEIDRVVHEATI 182 (396)
T ss_pred ccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------ccCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999999999987754 5899999999999987543
Q ss_pred HhCCCCC-----CCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHH
Q 007222 368 SKEHFRG-----LSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTA 442 (612)
Q Consensus 368 ~~~g~~~-----~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~ 442 (612)
..|+.. ..|+.++++|.|..++|+.|++ ++|++||+|.+|+|+.|+||++|++|||++|+++++++++|++
T Consensus 183 -~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~---r~L~~GDiV~iDvg~~~~GY~aD~tRT~~VG~~~~e~~~l~e~ 258 (396)
T PLN03158 183 -AAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDA---RKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKC 258 (396)
T ss_pred -HcCCccccccccCCCceeeecccccccCCCCCC---ccCCCCCEEEEEEeEEECCEEEeEEeEEEcCCCCHHHHHHHHH
Confidence 344321 3588899999999999999976 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCCCCC--CCcccccCCeEeecc
Q 007222 443 VLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKP--RNVPIHASMTATDEP 519 (612)
Q Consensus 443 ~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~~~~--~~~~l~~gmv~~iEP 519 (612)
++++++++++++|| |++.++|+.++++++.+.|+. +.|.+||||| +.+||.|.+..... ...+|+|||||||||
T Consensus 259 ~~eal~~aI~~vkP-Gv~~~dI~~~i~~~~~~~G~~~v~~~~GHGIG--~~~He~P~i~~~~~~~~~~~l~~GMVfTIEP 335 (396)
T PLN03158 259 TYECLEKAIAIVKP-GVRYREVGEVINRHATMSGLSVVKSYCGHGIG--ELFHCAPNIPHYARNKAVGVMKAGQVFTIEP 335 (396)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHcCCCccCCccCCccc--cccCCCCCCCcccCCCCCCEecCCcEEEECC
Confidence 99999999999999 999999999999999999996 6788999999 99999998332221 237999999999999
Q ss_pred ccee-----------------cCcceEEEeeeeEEeeCCCcccCCCCccccceeccc-CcccCCc
Q 007222 520 GYYE-----------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW-APYQIKM 566 (612)
Q Consensus 520 g~y~-----------------~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~-~P~~~~l 566 (612)
++|. +|.+|+|+||+|+||++ |+|+||. .|....+
T Consensus 336 ~i~~g~~~~~~~~d~wt~~t~dG~~~aq~E~tvlVTe~------------G~EiLT~~~~~~~~~ 388 (396)
T PLN03158 336 MINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTET------------GVEVLTARLPSSPDV 388 (396)
T ss_pred eeccCcccceecCCCceEEecCCceeeEeeeEEEEeCC------------cceECCCCCCCCccc
Confidence 9984 35567899999999999 9999995 6644443
No 20
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-40 Score=335.90 Aligned_cols=363 Identities=24% Similarity=0.323 Sum_probs=271.2
Q ss_pred cCCCCCCCCceeeccc----ccCCCHHHHHHHHHHHHHhcCCCEEEecCc----------------cccceeeecccCCC
Q 007222 132 NRPPVETYPVTVQQIE----FAGSSVVEKLKELREKLTNEKARGIIITTL----------------DEVAWLYNIRGTDV 191 (612)
Q Consensus 132 ~rp~~~~~~~~~~~~~----f~~~~~~~Rl~rlr~~m~~~gld~lll~~~----------------~ni~yltg~~~~~~ 191 (612)
.+|...+.|-...|.+ .+..||..|..||-+.|.++. .+||.+. .|+.||||+...+
T Consensus 42 GQpt~~thPhli~pgEltPgis~~Ey~~RR~rl~~ll~~~a--~~il~sap~~~msg~ipY~f~Qd~df~YLtGc~EP~- 118 (488)
T KOG2414|consen 42 GQPTSVTHPHLIQPGELTPGISATEYKERRSRLMSLLPANA--MVILGSAPVKYMSGAIPYTFRQDNDFYYLTGCLEPD- 118 (488)
T ss_pred CCCCCCCCccccCCCCcCCCccHHHHHHHHHHHHHhCCccc--EEEEccCchhhhcCccceeeecCCCeEEEeccCCCC-
Confidence 4787777777766655 567899999999999998864 4454442 3688888875432
Q ss_pred CCCceeeEEEEEe--CC---ceEEEEeCCCCCHHHHHHhhcCCe----------EEEeCCchHHHHHHHHhccCCCCCCC
Q 007222 192 PYCPVVHAFAIVT--TN---AAFLYVDKRKVSSEVISFLKESGV----------EVRDYDAVSSDVVLLQSNQLNPPADV 256 (612)
Q Consensus 192 ~~~p~~~a~liv~--~~---~~~L~~~~~~~~~~~~~~l~~~~v----------~v~~y~~~~~~l~~l~~~~l~~~~~~ 256 (612)
+.+++. +. ...+|++.+.-..+..+.. ..+. +-.+-+++...|.+...
T Consensus 119 -------~vl~l~~~d~~s~~~~lf~p~kdP~~e~WeG~-rtG~~~a~~if~v~ea~~~s~l~~~L~k~~~--------- 181 (488)
T KOG2414|consen 119 -------AVLLLLKGDERSVAYDLFMPPKDPTAELWEGP-RTGTDGASEIFGVDEAYPLSGLAVFLPKMSA--------- 181 (488)
T ss_pred -------eeEEEeecccccceeeEecCCCCccHHhhcCc-cccchhhhhhhcchhhcchhhHHHHHHHHHh---------
Confidence 444443 22 2467887653222222211 0111 11112223333333321
Q ss_pred CCCCEEEEcCCCCc--HH--HHHhccc-----CceeecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007222 257 QGSDLIWADPNSCS--YA--LYSKLNS-----DKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQ 327 (612)
Q Consensus 257 ~~~~~ig~d~~~~~--~~--~~~~L~~-----~~~~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~ 327 (612)
....+|.+..... .+ ..+.|.. .++..+...+.++|.||||+|+++||+|+.|+++++-..+-.
T Consensus 182 -~~~~i~~d~~ss~a~s~~~~~~dl~~~~~~~~~~~~~~~li~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~------ 254 (488)
T KOG2414|consen 182 -LLYKIWQDKASSKASSALKNMQDLLGFQSKSSTVRPVSNLIERLRLIKSPAELELMREACNIASQTFSETMFG------ 254 (488)
T ss_pred -hhhhhhhhhccchhhhHHHHHHhhhhhcccCcccccHHHHHHHHHccCCHHHHHHHHHHhhhhhHHHHHHHhh------
Confidence 1345666643321 11 1111211 247788899999999999999999999999999977654321
Q ss_pred HHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCe
Q 007222 328 EIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSI 407 (612)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~ 407 (612)
.++...|..+.+.++. .....|+...+|++.|+.|.|+..+||.-.+ ..++++|+
T Consensus 255 ---------------------sr~~~~E~~l~a~~ey-e~r~rGad~~AYpPVVAgG~na~tIHY~~Nn---q~l~d~em 309 (488)
T KOG2414|consen 255 ---------------------SRDFHNEAALSALLEY-ECRRRGADRLAYPPVVAGGKNANTIHYVRNN---QLLKDDEM 309 (488)
T ss_pred ---------------------ccCCcchhhHhhhhhh-heeecCccccccCCeeecCcccceEEEeecc---cccCCCcE
Confidence 4778999999999986 4567888889999999999999999999876 89999999
Q ss_pred EEEeecceeCCcccceEeeeec-CCCCHHHHHHHHHHHHHHHHHHhccCC-CCCchhHHHHHHHH----HHHHcCC----
Q 007222 408 YLCDSGAQYQDGTTDITRTFHF-GKPSAHEKACYTAVLKGHIALGNAVFP-NGTCGHTLDILARL----PLWKYGL---- 477 (612)
Q Consensus 408 v~iD~g~~~~gy~~d~tRT~~~-G~p~~~~~~~~~~~~~a~~~~~~~~~P-~G~~~~~v~~~~~~----~~~~~G~---- 477 (612)
|++|.||.+.||++|+||||.+ |+.++.|+++|++++..++..+..++| .|++.++++..... .+++-|.
T Consensus 310 VLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~kt~ 389 (488)
T KOG2414|consen 310 VLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIRKTD 389 (488)
T ss_pred EEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhCcccch
Confidence 9999999999999999999998 999999999999999999999999987 68999999876554 4445554
Q ss_pred ---------CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeecccceecCc---------ceEEEeeeeEEee
Q 007222 478 ---------DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGN---------FGIRLENVLVVTD 539 (612)
Q Consensus 478 ---------~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g~---------~gvriEd~v~Vt~ 539 (612)
.++|+.||-+| |+||+-|. ++ .+.+|+||||||||||+|+|.. -|+||||.|+|++
T Consensus 390 ~ee~~~~~klcPHhVgHyLG--mDVHD~p~-v~---r~~pL~pg~ViTIEPGvYIP~d~d~P~~FrGIGiRIEDDV~i~e 463 (488)
T KOG2414|consen 390 REEMIQAEKLCPHHVGHYLG--MDVHDCPT-VS---RDIPLQPGMVITIEPGVYIPEDDDPPEEFRGIGIRIEDDVAIGE 463 (488)
T ss_pred HHHHHhhhhcCCcccchhcC--cccccCCC-CC---CCccCCCCceEEecCceecCccCCCchHhcCceEEeecceEecc
Confidence 26899999999 99999997 33 6889999999999999998753 3899999999999
Q ss_pred CCCcccCCCCccccceecc-cCcccC
Q 007222 540 ANTKFNFGDKGYLSFEHIT-WAPYQI 564 (612)
Q Consensus 540 ~~~~~~~~~~~~~g~e~LT-~~P~~~ 564 (612)
+ |+|+|| .+|+|+
T Consensus 464 d------------g~evLT~a~pKei 477 (488)
T KOG2414|consen 464 D------------GPEVLTAACPKEI 477 (488)
T ss_pred C------------CceeehhcccCCH
Confidence 9 889999 578443
No 21
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=1.7e-39 Score=320.64 Aligned_cols=204 Identities=36% Similarity=0.485 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeE
Q 007222 301 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTI 380 (612)
Q Consensus 301 I~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~i 380 (612)
|++||+|+++++.++..+.+. +++|+||.|+++.+... ..+.|..+.+|+++
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~---------------------------~~~G~te~ei~~~~~~~-~~~~g~~~~~~~~~ 52 (208)
T cd01092 1 IELLRKAARIADKAFEELLEF---------------------------IKPGMTEREVAAELEYF-MRKLGAEGPSFDTI 52 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---------------------------CcCCCCHHHHHHHHHHH-HHHcCCCCCCCCcE
Confidence 689999999999999876653 58999999999999885 45667777899999
Q ss_pred EEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 007222 381 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTC 460 (612)
Q Consensus 381 v~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~ 460 (612)
+++|+|+..+|+.|++ +++++||++.+|+|++|+||++|++||+++|+|+++++++|+.+.++++++++++|| |++
T Consensus 53 v~~g~~~~~~h~~~~~---~~l~~gd~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~p-G~~ 128 (208)
T cd01092 53 VASGPNSALPHGVPSD---RKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKP-GVT 128 (208)
T ss_pred EEECccccccCCCCCC---cCcCCCCEEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCc
Confidence 9999999999999876 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred hhHHHHHHHHHHHHcCC--CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeecccceecCcceEEEeeeeEEe
Q 007222 461 GHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 461 ~~~v~~~~~~~~~~~G~--~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
++||++++++++++.|+ ++.|++||||| +..||.|. +..+ ++.+|++||||++||++|.++.+|+|+||+|+||
T Consensus 129 ~~di~~~~~~~~~~~g~~~~~~~~~Gh~iG--~~~~e~p~-i~~~-~~~~l~~gmv~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 129 AKEVDKAARDVIEEAGYGEYFIHRTGHGVG--LEVHEAPY-ISPG-SDDVLEEGMVFTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred HHHHHHHHHHHHHHcCccccCCCCCccccC--cccCcCCC-cCCC-CCCCcCCCCEEEECCeEEecCCCEEEeeeEEEEC
Confidence 99999999999999998 58999999999 99999997 7776 8999999999999999999999999999999999
Q ss_pred eC
Q 007222 539 DA 540 (612)
Q Consensus 539 ~~ 540 (612)
++
T Consensus 205 ~~ 206 (208)
T cd01092 205 ED 206 (208)
T ss_pred CC
Confidence 98
No 22
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=100.00 E-value=9.2e-40 Score=329.58 Aligned_cols=239 Identities=30% Similarity=0.426 Sum_probs=206.4
Q ss_pred cCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHH
Q 007222 285 QQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLES 364 (612)
Q Consensus 285 ~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~ 364 (612)
.-+.+.+.|.|||+.||+.||.|++|++.|+.+++.. .+||+.|.++....+.
T Consensus 175 lyp~m~E~RviKs~~EieviRya~kISseaH~~vM~~---------------------------~~pg~~Eyq~eslF~h 227 (492)
T KOG2737|consen 175 LYPILAECRVIKSSLEIEVIRYANKISSEAHIEVMRA---------------------------VRPGMKEYQLESLFLH 227 (492)
T ss_pred hhHHHhhheeeCCHHHHHHHHHHHhhccHHHHHHHHh---------------------------CCchHhHHhHHHHHHH
Confidence 3457889999999999999999999999999988875 4899999999999887
Q ss_pred HHHHhCCCCCCCCCeEEEecCCCccccc----CCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeec-CCCCHHHHHH
Q 007222 365 FRASKEHFRGLSFPTISSVGPNAAIMHY----SPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSAHEKAC 439 (612)
Q Consensus 365 ~~~~~~g~~~~~f~~iv~~G~~~~~~h~----~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~-G~p~~~~~~~ 439 (612)
..-..+|.+..++..|.+||+|+++.|| .|++ +.|+.||..++|+|+.|.+|.+|+|++|.. |+.|++|+.+
T Consensus 228 h~y~~GGcRh~sYtcIc~sG~ns~vLHYgha~apNd---~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~V 304 (492)
T KOG2737|consen 228 HSYSYGGCRHLSYTCICASGDNSAVLHYGHAGAPND---RTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLV 304 (492)
T ss_pred hhhccCCccccccceeeecCCCcceeeccccCCCCC---cccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHH
Confidence 6555677788999999999999999999 5665 999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHH----HHcCC----------------CCCCCCCcccCCCCcccCC---
Q 007222 440 YTAVLKGHIALGNAVFPNGTCGHTLDILARLPL----WKYGL----------------DYRHGTGHGVGSYLNVHEG--- 496 (612)
Q Consensus 440 ~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~----~~~G~----------------~~~h~~GHgiG~~l~~hE~--- 496 (612)
|++|+.++.++++++|| |+..-+++..+.+++ ++.|. .++|++||-+| |++|+-
T Consensus 305 YnaVLda~navm~a~Kp-Gv~W~Dmh~La~kvlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lG--lDvHDvGGy 381 (492)
T KOG2737|consen 305 YNAVLDASNAVMEAMKP-GVWWVDMHKLAEKVLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLG--LDVHDVGGY 381 (492)
T ss_pred HHHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHHhcCceeccHHHHHHhccCeeecccccccccc--ccccccCCC
Confidence 99999999999999999 999999999887654 33343 47899999999 999982
Q ss_pred CCCCC-CC-C------CCcccccCCeEeeccccee--------------------------cCcceEEEeeeeEEeeCCC
Q 007222 497 PQSIS-FK-P------RNVPIHASMTATDEPGYYE--------------------------DGNFGIRLENVLVVTDANT 542 (612)
Q Consensus 497 P~~i~-~~-~------~~~~l~~gmv~~iEPg~y~--------------------------~g~~gvriEd~v~Vt~~~~ 542 (612)
|.... +. | ..+.|++|||+|+|||.|+ -+.+||||||.|+||++
T Consensus 382 p~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcYFi~~Ll~ealadp~~~~f~n~e~~~rfr~~GGVRIEdDv~vt~~-- 459 (492)
T KOG2737|consen 382 PEGVERPDEPGLRSLRTARHLKEGMVITVEPGCYFIDFLLDEALADPARAEFLNREVLQRFRGFGGVRIEDDVVVTKS-- 459 (492)
T ss_pred CCCCCCCCcchhhhhhhhhhhhcCcEEEecCChhHHHHHHHHHhcChHhhhhhhHHHHHHhhccCceEeeccEEEecc--
Confidence 21110 00 1 4578999999999999994 15789999999999999
Q ss_pred cccCCCCccccceecccCcccCCccc
Q 007222 543 KFNFGDKGYLSFEHITWAPYQIKMIN 568 (612)
Q Consensus 543 ~~~~~~~~~~g~e~LT~~P~~~~li~ 568 (612)
|.|+||.+|++.+.|.
T Consensus 460 ----------G~enlt~vprtveeIE 475 (492)
T KOG2737|consen 460 ----------GIENLTCVPRTVEEIE 475 (492)
T ss_pred ----------ccccccCCCCCHHHHH
Confidence 9999999996544443
No 23
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=3e-39 Score=326.05 Aligned_cols=212 Identities=21% Similarity=0.212 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC-----C
Q 007222 301 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRG-----L 375 (612)
Q Consensus 301 I~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~-----~ 375 (612)
|+.||+|++++.+++..+++. +++|+||.|+++.+.+. ....|... .
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~---------------------------~~pG~tE~ev~~~~~~~-~~~~G~~~~~~~~~ 52 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKA---------------------------IKPGVTTKELDQIAHEF-IEEHGAYPAPLGYY 52 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---------------------------ccCCCCHHHHHHHHHHH-HHHcCCCcccccCC
Confidence 689999999999999887654 58999999999999875 34555432 3
Q ss_pred CCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccC
Q 007222 376 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVF 455 (612)
Q Consensus 376 ~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~ 455 (612)
+|+..+++|.|++.+|+.|++ ++|++||++++|+|+.|+||++|++|||++|+|+++|+++|+.++++++++++++|
T Consensus 53 ~~~~~~~~~~~~~~~h~~~~~---~~l~~Gd~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (238)
T cd01086 53 GFPKSICTSVNEVVCHGIPDD---RVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVK 129 (238)
T ss_pred CCCcceecCCCCceeCCCCCC---cccCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 466788899999999999876 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCC---CCCCCcccccCCeEeeccccee--------
Q 007222 456 PNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSIS---FKPRNVPIHASMTATDEPGYYE-------- 523 (612)
Q Consensus 456 P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~---~~~~~~~l~~gmv~~iEPg~y~-------- 523 (612)
| |+++++|++++++++++.|+. +.|.+||||| +.+||.|..+. .. ++.+|++||||++||++|.
T Consensus 130 p-G~~~~~v~~~~~~~~~~~G~~~~~~~~GHgiG--~~~~e~p~~~~~~~~~-~~~~le~Gmv~~iep~i~~~~~~~~~~ 205 (238)
T cd01086 130 P-GNRIGDIGHAIEKYAEKNGYSVVREFGGHGIG--RKFHEEPQIPNYGRPG-TGPKLKPGMVFTIEPMINLGTYEVVTL 205 (238)
T ss_pred C-CCCHHHHHHHHHHHHHHcCcceecCccccCCC--CccccCCCcCCccCCC-CCCEecCCCEEEEeeEEECCCCceEEC
Confidence 9 999999999999999999995 6788999999 99999997431 33 6899999999999999986
Q ss_pred ---------cCcceEEEeeeeEEeeCCCcccCCCCccccceeccc
Q 007222 524 ---------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 524 ---------~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~ 559 (612)
+|.+|+|+||+|+||++ |+|.||.
T Consensus 206 ~~~~~~~~~~g~~g~~~edtv~Vte~------------G~e~Lt~ 238 (238)
T cd01086 206 PDGWTVVTKDGSLSAQFEHTVLITED------------GPEILTL 238 (238)
T ss_pred CCCCEEEcCCCCEEEeeeeEEEEcCC------------cceeCCC
Confidence 57789999999999999 9999984
No 24
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=2.7e-39 Score=326.45 Aligned_cols=215 Identities=19% Similarity=0.272 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCcccccccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCC----
Q 007222 301 LDGLKKAHIRDGAAIVQYI-IWLDKQMQEIYGASGYFLEGEATKEKKHSGTVK--LTEVTVSDKLESFRASKEHFR---- 373 (612)
Q Consensus 301 I~~~r~A~~~~~~a~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~tE~ev~~~l~~~~~~~~g~~---- 373 (612)
+++||+|+.++..+|..++ ..|+..+ .+| +|+.+++..++.. +...++.
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~i-----------------------d~~~~~t~~~l~~~~e~~-~~~~~~~~~~~ 56 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEII-----------------------DQEKKVTHSKLSDKVEKA-IEDKKKYKAKL 56 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccccccHHHHHHHHHHH-HhCchhhhcCC
Confidence 4689999999999997654 4555544 455 9999999999985 4444433
Q ss_pred -----CCCCCeEEEecCCC-cccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHH
Q 007222 374 -----GLSFPTISSVGPNA-AIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGH 447 (612)
Q Consensus 374 -----~~~f~~iv~~G~~~-~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~ 447 (612)
+++|++|+++|+|+ ..+|+.+++ +.+..|++|++|+|+.|+|||+|+||||++| |+++|+++|+.+++++
T Consensus 57 ~~~~~~~~y~~iv~sG~~~~~l~h~~~s~---~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~ 132 (243)
T cd01091 57 DPEQLDWCYPPIIQSGGNYDLLKSSSSSD---KLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQ 132 (243)
T ss_pred CHHHcCcccCCeEeECcCcccCCCCCCCc---cccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHH
Confidence 67999999999999 899998876 8999999999999999999999999999998 7999999999999999
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHHHHcCC----CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeecccce-
Q 007222 448 IALGNAVFPNGTCGHTLDILARLPLWKYGL----DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY- 522 (612)
Q Consensus 448 ~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~----~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y- 522 (612)
+++++++|| |+++++|+.++++++++.|. ++.|++||||| +++||.|..++.+ ++.+|++||||++|||+|
T Consensus 133 ~~~i~~lkp-G~~~~dv~~~a~~~i~~~~~~~~~~~~~~~GHgiG--le~hE~~~~l~~~-~~~~L~~GMvf~vepGi~~ 208 (243)
T cd01091 133 EEILKELKP-GAKLSDVYQKTLDYIKKKKPELEPNFTKNLGFGIG--LEFRESSLIINAK-NDRKLKKGMVFNLSIGFSN 208 (243)
T ss_pred HHHHHHcCC-CCcHHHHHHHHHHHHHHhChhHHHhCcCCcccccC--cccccCccccCCC-CCCCcCCCCEEEEeCCccc
Confidence 999999999 99999999999999999874 57899999999 9999988656766 789999999999999999
Q ss_pred ecC---------cceEEEeeeeEEeeCCCcccCCCCccccc-eeccc
Q 007222 523 EDG---------NFGIRLENVLVVTDANTKFNFGDKGYLSF-EHITW 559 (612)
Q Consensus 523 ~~g---------~~gvriEd~v~Vt~~~~~~~~~~~~~~g~-e~LT~ 559 (612)
.++ .+|+|+||+|+||++ |+ |.||.
T Consensus 209 ~~~~~~~~~~~~~~gv~ieDtV~Vt~~------------G~~~~LT~ 243 (243)
T cd01091 209 LQNPEPKDKESKTYALLLSDTILVTED------------EPAIVLTN 243 (243)
T ss_pred ccCccccCccCCeeEEEEEEEEEEcCC------------CCceecCC
Confidence 443 689999999999999 88 99884
No 25
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=7.1e-38 Score=309.17 Aligned_cols=202 Identities=31% Similarity=0.499 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeEE
Q 007222 302 DGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTIS 381 (612)
Q Consensus 302 ~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~iv 381 (612)
|+||+|++++++++.++++.+ ++|+||.|+++.+.+......|..+.+|++++
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~---------------------------~~G~te~ei~~~~~~~~~~~~g~~~~~~~~~~ 53 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEAL---------------------------RPGMTEYEIAAAIERAMLRRHGGEEPAFPPIV 53 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------------STTCBHHHHHHHHHHHHHHHTTTTEESSESEE
T ss_pred CHHHHHHHHHHHHHHHHHHHc---------------------------cCCCcHHHHHHHHHHHHHHHcCCCcccCCceE
Confidence 689999999999999988753 79999999999999864456677778899999
Q ss_pred EecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCch
Q 007222 382 SVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCG 461 (612)
Q Consensus 382 ~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~~ 461 (612)
++|+|+..+|+.|++ ++|++||+|.+|+|++|+||++|++||+++| |+++|+++|+.++++++++++++|| |+++
T Consensus 54 ~~g~~~~~~~~~~~~---~~l~~gd~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~~p-G~~~ 128 (207)
T PF00557_consen 54 GSGPNTDLPHYTPTD---RRLQEGDIVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEALRP-GVTG 128 (207)
T ss_dssp EECCCCGETTTBCCS---SBESTTEEEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH-ST-TSBH
T ss_pred ecCCcceecceeccc---eeeecCCcceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhccc-cccc
Confidence 999999999998865 9999999999999999999999999999999 9999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHcCC--CCCCCCCcccCCCCcccCC-CCCCC-CCCCCcccccCCeEeecccce-ecCcceEEEeeeeE
Q 007222 462 HTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEG-PQSIS-FKPRNVPIHASMTATDEPGYY-EDGNFGIRLENVLV 536 (612)
Q Consensus 462 ~~v~~~~~~~~~~~G~--~~~h~~GHgiG~~l~~hE~-P~~i~-~~~~~~~l~~gmv~~iEPg~y-~~g~~gvriEd~v~ 536 (612)
++|++++++.+.+.|+ .+.|.+||||| +.+||. |. +. .+ ++.+|+|||||++||+++ .++.+|+++||+++
T Consensus 129 ~~v~~~~~~~~~~~g~~~~~~~~~GH~iG--~~~~~~~P~-i~~~~-~~~~l~~gmv~~iep~~~~~~~~~g~~~ed~v~ 204 (207)
T PF00557_consen 129 SDVYEAVREVLEEYGLEEPYPHGLGHGIG--LEFHEPGPN-IARPG-DDTVLEPGMVFAIEPGLYFIPGWGGVRFEDTVL 204 (207)
T ss_dssp HHHHHHHHHHHHHTTEGEEBTSSSEEEES--SSSSEEEEE-ESSTT-TSSB--TTBEEEEEEEEEEETTSEEEEEBEEEE
T ss_pred chhhHHHHHHHHhhcccceeeeccccccc--cccccccee-eeccc-ccceecCCCceeEeeeEEccCCCcEEEEEEEEE
Confidence 9999999999999998 58999999999 999997 98 55 56 899999999999999999 67899999999999
Q ss_pred Eee
Q 007222 537 VTD 539 (612)
Q Consensus 537 Vt~ 539 (612)
||+
T Consensus 205 Vte 207 (207)
T PF00557_consen 205 VTE 207 (207)
T ss_dssp EES
T ss_pred ECc
Confidence 996
No 26
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=9.7e-36 Score=291.64 Aligned_cols=203 Identities=31% Similarity=0.450 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeE
Q 007222 301 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTI 380 (612)
Q Consensus 301 I~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~i 380 (612)
|+.||+|+++++.++..+... ++||+||.|+++.+... ....|. ..+++++
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~---------------------------~~~G~te~ei~~~~~~~-~~~~g~-~~~~~~~ 51 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEA---------------------------IRPGVTEAEVAAAIEQA-LRAAGG-YPAGPTI 51 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---------------------------CcCCCCHHHHHHHHHHH-HHHcCC-CCCCCcE
Confidence 578999999999999887654 58999999999999875 455665 6778899
Q ss_pred EEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 007222 381 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTC 460 (612)
Q Consensus 381 v~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~ 460 (612)
+++|+|+..+|+.|++ +++++||++++|+|++|+||++|++||+++|+++++|+++|+.+.++++++++.++| |++
T Consensus 52 v~~g~~~~~~h~~~~~---~~i~~gd~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~p-G~~ 127 (207)
T cd01066 52 VGSGARTALPHYRPDD---RRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRP-GVT 127 (207)
T ss_pred EEECccccCcCCCCCC---CCcCCCCEEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 9999999999999875 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred hhHHHHHHHHHHHHcCC--CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeecccceecCcceEEEeeeeEEe
Q 007222 461 GHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 461 ~~~v~~~~~~~~~~~G~--~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
+.+++.++++.+++.|+ ++.|++||||| +..||.|. +... .+.+|++||||++||++|.++.+|+++||+++||
T Consensus 128 ~~ei~~~~~~~~~~~g~~~~~~~~~Gh~iG--~~~~e~~~-~~~~-~~~~l~~gmv~~iep~~~~~~~~g~~~ed~v~vt 203 (207)
T cd01066 128 AEEVDAAAREVLEEHGLGPNFGHRTGHGIG--LEIHEPPV-LKAG-DDTVLEPGMVFAVEPGLYLPGGGGVRIEDTVLVT 203 (207)
T ss_pred HHHHHHHHHHHHHHcCccccCCCCCccccC--cccCCCCC-cCCC-CCCCcCCCCEEEECCEEEECCCcEEEeeeEEEEe
Confidence 99999999999999998 58899999999 99999997 6666 7899999999999999999988999999999999
Q ss_pred eC
Q 007222 539 DA 540 (612)
Q Consensus 539 ~~ 540 (612)
++
T Consensus 204 ~~ 205 (207)
T cd01066 204 ED 205 (207)
T ss_pred CC
Confidence 98
No 27
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=100.00 E-value=3.1e-35 Score=294.94 Aligned_cols=208 Identities=17% Similarity=0.169 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHH---------hCC
Q 007222 301 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRAS---------KEH 371 (612)
Q Consensus 301 I~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~---------~~g 371 (612)
++.||+|++++++++..+++. +++|+||.|++..+++.... ..|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~---------------------------i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g 53 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISL---------------------------CVPGAKVVDLCEKGDKLILEELGKVYKKEKKL 53 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHh---------------------------ccCCCcHHHHHHHHHHHHHHhhcccccCcccc
Confidence 368999999999999987764 58999999998776553222 155
Q ss_pred CCCCCCCeEEEecCCCcccccCCCC-CCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCH-----HHHHHHHHHHH
Q 007222 372 FRGLSFPTISSVGPNAAIMHYSPQS-ETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSA-----HEKACYTAVLK 445 (612)
Q Consensus 372 ~~~~~f~~iv~~G~~~~~~h~~p~~-~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~-----~~~~~~~~~~~ 445 (612)
..+.+|+++++ .|++.+|+.|.. .++++|++||+|++|+|+.|+||++|+||||++|+|++ +++++|+++++
T Consensus 54 ~~g~~~~~~v~--~n~~~~H~~p~~~~~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~e 131 (228)
T cd01089 54 EKGIAFPTCIS--VNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHY 131 (228)
T ss_pred cCCCCcCeEec--cCceeecCCCCCCCCCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHH
Confidence 66788888887 488899999743 24589999999999999999999999999999999875 89999999999
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHHcCC-----CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeeccc
Q 007222 446 GHIALGNAVFPNGTCGHTLDILARLPLWKYGL-----DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPG 520 (612)
Q Consensus 446 a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~-----~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg 520 (612)
+++++++++|| |++++||+.++++++.+.|+ .+.|++|||+ ..++.+. . -..+|++||||++||+
T Consensus 132 a~~~~~~~~kp-G~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~----~~~~~~~----~-~~~~l~~gmvf~~ep~ 201 (228)
T cd01089 132 ALEAALRLLRP-GNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVV----SSGEGKA----K-LVECVKHGLLFPYPVL 201 (228)
T ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHHHHHcCCEEecCccccCcCceE----ecCCCCc----c-chhhccCCccccccee
Confidence 99999999999 99999999999999999996 3456666644 4566553 1 3678999999999999
Q ss_pred ceecCcceEEEeeeeEEeeCCCcccCCCCccccceeccc
Q 007222 521 YYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW 559 (612)
Q Consensus 521 ~y~~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~ 559 (612)
++.+|.+|+++||||+||++ |+|.||.
T Consensus 202 ~~~~g~~~~~~~~Tv~vt~~------------G~e~lt~ 228 (228)
T cd01089 202 YEKEGEVVAQFKLTVLLTPN------------GVTVLTG 228 (228)
T ss_pred EccCCCeEEEEEEEEEEcCC------------CCeeCCC
Confidence 99999999999999999999 9999983
No 28
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-31 Score=266.53 Aligned_cols=222 Identities=24% Similarity=0.305 Sum_probs=191.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHH-----
Q 007222 294 AIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRAS----- 368 (612)
Q Consensus 294 ~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~----- 368 (612)
.+|+++||+.||+|++++..++..+... .+||+|..||....+++...
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~~~~~~---------------------------v~pGvtt~Eld~~~~~~i~~~ga~p 56 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALKEVASL---------------------------VKPGVTTLELDEIAEEFIREKGAYP 56 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------cCCCCCHHHHHHHHHHHHHHcCcee
Confidence 3899999999999999999998876653 58999999999999986442
Q ss_pred -hCCCCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCC-HHHHHHHHHHHHH
Q 007222 369 -KEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPS-AHEKACYTAVLKG 446 (612)
Q Consensus 369 -~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~-~~~~~~~~~~~~a 446 (612)
..|+.+ |+.-+|..-|...+||.|+ .+++|++||+|.+|+|+.++||++|.++||.+|+.+ +..+++.+++.+|
T Consensus 57 a~~gy~g--~~~~~ciSvNe~v~HgiP~--d~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~ea 132 (255)
T COG0024 57 AFLGYKG--FPFPTCISVNEVVAHGIPG--DKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEA 132 (255)
T ss_pred hhccCcC--CCcceEeehhheeeecCCC--CCcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHH
Confidence 234444 5556677788888999998 468999999999999999999999999999999755 4677799999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCCCCC--CCcccccCCeEeeccccee
Q 007222 447 HIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKP--RNVPIHASMTATDEPGYYE 523 (612)
Q Consensus 447 ~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~~~~--~~~~l~~gmv~~iEPg~y~ 523 (612)
+.++++++|| |++.++|-.++++++++.||. ....+||||| ..+||.|+...... ....|+|||||+|||.+..
T Consensus 133 l~~~I~~vkp-G~~l~~Ig~aIq~~~~~~G~~vVr~~~GHgig--~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~ 209 (255)
T COG0024 133 LYAGIEAVKP-GARLGDIGRAIQEYAESRGFSVVRNLTGHGIG--RELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINT 209 (255)
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHHHcCCEEeecccCCccC--cccCCCCeeccccCCCCCcccCCCCEEEEeeEEEc
Confidence 9999999999 999999999999999999995 6778999999 79999999666442 2479999999999998863
Q ss_pred ------------------cCcceEEEeeeeEEeeCCCcccCCCCccccceecccCc
Q 007222 524 ------------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAP 561 (612)
Q Consensus 524 ------------------~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~~P 561 (612)
++....+.|.|++||++ |+|+||..+
T Consensus 210 G~~~~~~~~~d~Wt~~t~d~~~~aq~EHTv~Vt~~------------g~eilT~~~ 253 (255)
T COG0024 210 GSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVTED------------GCEILTLRP 253 (255)
T ss_pred CCCceEecCCCCeEEEeCCCCEEeEEEEEEEEeCC------------CcEEeeCCC
Confidence 23456899999999999 999999765
No 29
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.97 E-value=7.1e-30 Score=273.27 Aligned_cols=198 Identities=17% Similarity=0.136 Sum_probs=168.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHH----
Q 007222 293 KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRAS---- 368 (612)
Q Consensus 293 R~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~---- 368 (612)
-.+|+++||+.||+|++++..++..+.++ ++||+|+.||++..+++...
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~---------------------------ikpG~t~~el~~~~~~~i~~~~a~ 63 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKSVVEA---------------------------CSPGAKVVDICEKGDAFIMEETAK 63 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHh---------------------------CCCCCCHHHHHHHHHHHHHHhhhh
Confidence 46899999999999999999999887764 58999999999887664322
Q ss_pred -----hCCCCCCCCCeEEEecCCCcccccCCCCC-CCCcCCCCCeEEEeecceeCCcccceEeeeecCC-----CCHHHH
Q 007222 369 -----KEHFRGLSFPTISSVGPNAAIMHYSPQSE-TCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGK-----PSAHEK 437 (612)
Q Consensus 369 -----~~g~~~~~f~~iv~~G~~~~~~h~~p~~~-~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~-----p~~~~~ 437 (612)
..+..+.+|+++++ .|...+||.|... .++.|++||+|.+|+|++++||++|++|||++|+ ++++++
T Consensus 64 ~~~~~~~~~~g~afpt~vS--vN~~v~H~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~ 141 (389)
T TIGR00495 64 IFKKEKEMEKGIAFPTCIS--VNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKA 141 (389)
T ss_pred hhcccccccCCCCCCeEEe--cCCeeeCCCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHH
Confidence 13346788998887 7888899999532 2378999999999999999999999999999995 467899
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccC-CCCCCC-CCC------CCcc
Q 007222 438 ACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHE-GPQSIS-FKP------RNVP 508 (612)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE-~P~~i~-~~~------~~~~ 508 (612)
++++++++|+.+++++++| |++.++|+.+++++++++|+. +.+.+||||| ..+|| .|.++. +.+ .+..
T Consensus 142 ~l~~aa~~A~~aai~~vkP-G~~~~dI~~ai~~v~~~~G~~~v~~~~gH~ig--r~~~~g~~~Ii~~~~~~~~~~~~~~~ 218 (389)
T TIGR00495 142 DVIAAAHLAAEAALRLVKP-GNTNTQVTEAINKVAHSYGCTPVEGMLSHQLK--QHVIDGEKVIISNPSDSQKKDHDTAE 218 (389)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHcCCeecCCceeeccc--ceeccCCCeeeecCCccccCCCCCCE
Confidence 9999999999999999999 999999999999999999995 6788999999 77888 665322 210 3568
Q ss_pred cccCCeEeecccce
Q 007222 509 IHASMTATDEPGYY 522 (612)
Q Consensus 509 l~~gmv~~iEPg~y 522 (612)
|++|||++|||.+.
T Consensus 219 le~gev~aIEp~vs 232 (389)
T TIGR00495 219 FEENEVYAVDILVS 232 (389)
T ss_pred ecCCCEEEEeeeec
Confidence 99999999999874
No 30
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.97 E-value=3.3e-29 Score=259.86 Aligned_cols=193 Identities=20% Similarity=0.184 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCe
Q 007222 300 ELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPT 379 (612)
Q Consensus 300 EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~ 379 (612)
+|+.||+|++++.+++..+.+. +++|+||.|+++.+++. ....|. +++|++
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~---------------------------i~pG~se~ei~~~~~~~-i~~~g~-~~afp~ 51 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKL---------------------------IKPGAKLLDVAEFVENR-IRELGA-KPAFPC 51 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh---------------------------ccCCCcHHHHHHHHHHH-HHHcCC-ccCCCC
Confidence 5899999999999999887653 58999999999999885 445564 588999
Q ss_pred EEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007222 380 ISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGT 459 (612)
Q Consensus 380 iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~ 459 (612)
++++|.+ .+||.|...+++.|++||+|.+|+|++|+||++|++||+++| ++++++++++.+|++++++++|| |+
T Consensus 52 ~vs~n~~--~~H~~p~~~d~~~l~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~ikp-G~ 125 (291)
T PRK08671 52 NISINEV--AAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVVRP-GV 125 (291)
T ss_pred EEeeCCC--ccCCCCCCCCCcccCCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 9887765 469999755568999999999999999999999999999999 47889999999999999999999 99
Q ss_pred chhHHHHHHHHHHHHcCC-CCCCCCCcccCCCCcccCCCCCC--CCCCCCcccccCCeEeecccceecCcceEE
Q 007222 460 CGHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHEGPQSI--SFKPRNVPIHASMTATDEPGYYEDGNFGIR 530 (612)
Q Consensus 460 ~~~~v~~~~~~~~~~~G~-~~~h~~GHgiG~~l~~hE~P~~i--~~~~~~~~l~~gmv~~iEPg~y~~g~~gvr 530 (612)
++++|+++++++++++|+ .+.|.+|||||.| .+||+|.+. ... ++.+|+|||||+|||.+ ..|.+.++
T Consensus 126 ~~~dv~~~i~~vi~~~G~~~~~~~~GHgiG~~-~~he~p~ip~~~~~-~~~~le~GmV~aIEp~~-t~G~G~v~ 196 (291)
T PRK08671 126 SVGEIGRVIEETIRSYGFKPIRNLTGHGLERY-ELHAGPSIPNYDEG-GGVKLEEGDVYAIEPFA-TDGEGKVV 196 (291)
T ss_pred CHHHHHHHHHHHHHHcCCcccCCCcccCcCCC-cccCCCccCccCCC-CCceeCCCCEEEEcceE-ECCCCeEe
Confidence 999999999999999999 4679999999932 789998732 223 68899999999999964 46665544
No 31
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-29 Score=247.99 Aligned_cols=223 Identities=20% Similarity=0.200 Sum_probs=194.5
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 007222 293 KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHF 372 (612)
Q Consensus 293 R~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~ 372 (612)
-.|.+++||+.||+|++++.+.+..+... ++||+|..|+...+..+......+
T Consensus 114 i~i~~~e~ie~mR~ac~LarevLd~Aa~~---------------------------v~PgvTTdEiD~~VH~a~Ierg~Y 166 (369)
T KOG2738|consen 114 IKILDPEGIEGMRKACRLAREVLDYAATL---------------------------VRPGVTTDEIDRAVHNAIIERGAY 166 (369)
T ss_pred eeccCHHHHHHHHHHHHHHHHHHHHHhhh---------------------------cCCCccHHHHHHHHHHHHHhcCCc
Confidence 35789999999999999999888765543 689999999999999864443333
Q ss_pred C----CCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHH
Q 007222 373 R----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHI 448 (612)
Q Consensus 373 ~----~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~ 448 (612)
- .-.||-.+++.-|..++|+.|.. |+|+.|||+.+|+...++||+.|+.+||++|+.+++.+++.+...++++
T Consensus 167 PSPLnYy~FPKS~CTSVNEviCHGIPD~---RpLedGDIvNiDVtvY~~GyHGDlneTffvG~Vde~~k~LVkvT~EcL~ 243 (369)
T KOG2738|consen 167 PSPLNYYGFPKSVCTSVNEVICHGIPDS---RPLEDGDIVNIDVTVYLNGYHGDLNETFFVGNVDEKAKKLVKVTRECLE 243 (369)
T ss_pred CCCcccCCCchhhhcchhheeecCCCCc---CcCCCCCEEeEEEEEEeccccCccccceEeeccCHHHHHHHHHHHHHHH
Confidence 2 23678889999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCCCCC--CCcccccCCeEeeccccee--
Q 007222 449 ALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKP--RNVPIHASMTATDEPGYYE-- 523 (612)
Q Consensus 449 ~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~~~~--~~~~l~~gmv~~iEPg~y~-- 523 (612)
.+++.+|| |++..++-.++.+...+.||. +...+||||| --.|-.|.+..+.. ...++.+||+|||||++..
T Consensus 244 kaI~~~kp-Gv~freiG~iI~kha~~~g~sVVr~ycGHGig--~~FH~~PnipHya~n~a~GvM~~G~tFTIEPmit~G~ 320 (369)
T KOG2738|consen 244 KAIAIVKP-GVSFREIGNIIQKHATKNGYSVVRSYCGHGIG--RVFHCAPNIPHYAKNKAPGVMKPGQTFTIEPMITIGT 320 (369)
T ss_pred HHHHHhCC-chhHHHHHHHHHHHhhhcCceeehhhhccccc--cccccCCCchhhcccCCcceeecCceEEeeeeecccc
Confidence 99999999 999999999999999999997 5677999999 56799898444331 3468999999999999863
Q ss_pred ---------------cCcceEEEeeeeEEeeCCCcccCCCCccccceecccC
Q 007222 524 ---------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWA 560 (612)
Q Consensus 524 ---------------~g~~gvriEd~v~Vt~~~~~~~~~~~~~~g~e~LT~~ 560 (612)
+|....++|.|++||++ |+|+||.-
T Consensus 321 ~~d~tWPD~WT~vTaDG~~sAQFEhTlLVT~t------------G~EILT~r 360 (369)
T KOG2738|consen 321 WEDITWPDDWTAVTADGKRSAQFEHTLLVTET------------GCEILTKR 360 (369)
T ss_pred cccccCCCCceEEecCCceecceeeEEEEecc------------cceehhcc
Confidence 35567899999999999 99999953
No 32
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.97 E-value=4.3e-29 Score=268.84 Aligned_cols=200 Identities=14% Similarity=0.096 Sum_probs=168.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHH---
Q 007222 291 LAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRA--- 367 (612)
Q Consensus 291 ~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~--- 367 (612)
+.+..+|++||+.||+|++++.+++..+... ++||+|+.||+..++....
T Consensus 148 ~~~~~~s~~EI~~~R~AaeIa~~vl~~~~~~---------------------------IkpG~se~EIa~~ie~~ir~~~ 200 (470)
T PTZ00053 148 RELEKLSEEQYQDLRRAAEVHRQVRRYAQSV---------------------------IKPGVKLIDICERIESKSRELI 200 (470)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhCCCCHHHHHHHHHHHHHHHH
Confidence 3444589999999999999999998877654 4799999999998887322
Q ss_pred HhCCC-CCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHH
Q 007222 368 SKEHF-RGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKG 446 (612)
Q Consensus 368 ~~~g~-~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a 446 (612)
...|. .+.+||+.+ +.|...+||.|..+++++|+.||+|.||+|++|+||++|++||+++| ++++++++++++|
T Consensus 201 ~~~G~~~g~aFPt~v--S~N~~aaH~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA 275 (470)
T PTZ00053 201 EADGLKCGWAFPTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDA 275 (470)
T ss_pred HhcCCcccCCCCcee--ecCccccCCCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHH
Confidence 22344 368898865 57888899999754458999999999999999999999999999997 6889999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHHcCCC----------CCCCCCcccCCCC-cccCCCCC--CCCCCCCcccccCC
Q 007222 447 HIALGNAVFPNGTCGHTLDILARLPLWKYGLD----------YRHGTGHGVGSYL-NVHEGPQS--ISFKPRNVPIHASM 513 (612)
Q Consensus 447 ~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~----------~~h~~GHgiG~~l-~~hE~P~~--i~~~~~~~~l~~gm 513 (612)
+.+++++++| |+++++|+.+++++++++|+. +.|.+||||| + .+||+|.. +..+ +..+|++||
T Consensus 276 ~~aaI~~~kp-Gv~~~dI~~AIqevies~G~e~~Gk~f~~k~I~nltGHgIG--~y~iHe~k~iP~v~~~-~~~~LeeGm 351 (470)
T PTZ00053 276 TNTGIKEAGI-DVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGHSIG--PYIIHGGKSVPIVKGG-ENTRMEEGE 351 (470)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCcccCcccccccccCCcccCCC--CccccCCCcCCeeCCC-CCCEecCCC
Confidence 9999999999 999999999999999999972 3799999999 6 78995542 3333 678999999
Q ss_pred eEeecccceecCcc
Q 007222 514 TATDEPGYYEDGNF 527 (612)
Q Consensus 514 v~~iEPg~y~~g~~ 527 (612)
||+|||.+. .|.+
T Consensus 352 VfaIEPf~s-tG~G 364 (470)
T PTZ00053 352 LFAIETFAS-TGRG 364 (470)
T ss_pred EEEEcceee-CCCC
Confidence 999999765 4443
No 33
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.97 E-value=4.5e-29 Score=259.08 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC
Q 007222 298 PVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSF 377 (612)
Q Consensus 298 ~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f 377 (612)
-+||+.||+|++++.+++..+.+. +++|+||.|+++.+++. ....|.. ++|
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~---------------------------i~~G~se~el~~~~e~~-~~~~g~~-~aF 52 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADR---------------------------IVPGVKLLEVAEFVENR-IRELGAE-PAF 52 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------------CcCCCCHHHHHHHHHHH-HHHcCCC-CCC
Confidence 378999999999999999887664 58999999999999885 4455653 789
Q ss_pred CeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 007222 378 PTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPN 457 (612)
Q Consensus 378 ~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~ 457 (612)
+++++. |...+||.|...+++.|++||+|.+|+|++++||++|++||+++|++ ++++|+++.+|++++++.++|
T Consensus 53 p~~vs~--n~~~~H~~p~~~d~~~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~~---~~~l~~a~~~A~~aai~~~kP- 126 (295)
T TIGR00501 53 PCNISI--NECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQ---YDNLVKAAKDALYTAIKEIRA- 126 (295)
T ss_pred Ccceec--CCEeeCCCCCCCcCccCCCCCEEEEEEeEEECCEEEEEEEEEEeCcH---HHHHHHHHHHHHHHHHHHhcC-
Confidence 998774 56678999975556899999999999999999999999999999953 689999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHcCC-CCCCCCCcccCCCCcccCCCCC--CCCCCCCcccccCCeEeecccceecCcceEEEee
Q 007222 458 GTCGHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHEGPQS--ISFKPRNVPIHASMTATDEPGYYEDGNFGIRLEN 533 (612)
Q Consensus 458 G~~~~~v~~~~~~~~~~~G~-~~~h~~GHgiG~~l~~hE~P~~--i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd 533 (612)
|++++||++++++++.++|+ .+.|.+|||+|. +.+|++|.. +..+ ++.+|++||||++||. +..|.+.++-++
T Consensus 127 Gv~~~dV~~ai~~vi~~~G~~~i~~~~GHgig~-~~~h~g~~ip~i~~~-~~~~le~GmV~aIEP~-~~~G~G~v~~~~ 202 (295)
T TIGR00501 127 GVRVGEIGKAIQEVIESYGVKPISNLTGHSMAP-YRLHGGKSIPNVKER-DTTKLEEGDVVAIEPF-ATDGVGYVTDGG 202 (295)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeecCCCCcceec-ccccCCCccCeecCC-CCCEeCCCCEEEEcee-EECCcCeEecCC
Confidence 99999999999999999999 478999999995 357887532 3444 6789999999999994 567766554433
No 34
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.96 E-value=3.4e-28 Score=252.25 Aligned_cols=193 Identities=16% Similarity=0.111 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCeE
Q 007222 301 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTI 380 (612)
Q Consensus 301 I~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~~g~~~~~f~~i 380 (612)
++.||+|++++..++..+++. +++|+||.|+++.+++. ....|. +++|++.
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~---------------------------i~pG~te~ei~~~~~~~-i~~~G~-~~afp~~ 51 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSL---------------------------IKPGMTLLEIAEFVENR-IRELGA-GPAFPVN 51 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---------------------------ccCCCcHHHHHHHHHHH-HHHcCC-CCCCCce
Confidence 368999999999999887654 58999999999999885 445664 6788876
Q ss_pred EEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 007222 381 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTC 460 (612)
Q Consensus 381 v~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~ 460 (612)
+ +.|...+||.|...++++|++||+|.+|+|++++||++|++||+++|+ +++++|+++++|++++++.++| |++
T Consensus 52 i--s~n~~~~H~~p~~~d~~~l~~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~ikP-G~~ 125 (291)
T cd01088 52 L--SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAGP-DVR 125 (291)
T ss_pred e--ccCCEeeCCCCCCCCCcccCCCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 4 567778999997656789999999999999999999999999999985 7889999999999999999999 999
Q ss_pred hhHHHHHHHHHHHHcCC-CCCCCCCcccCCCCcccCCCCC--CCCCCCCcccccCCeEeecccceecCcceEEE
Q 007222 461 GHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHEGPQS--ISFKPRNVPIHASMTATDEPGYYEDGNFGIRL 531 (612)
Q Consensus 461 ~~~v~~~~~~~~~~~G~-~~~h~~GHgiG~~l~~hE~P~~--i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvri 531 (612)
+++|++++++++.++|+ .+.|.+|||||. +.+|++|.+ +... ++.+|+|||||+|||. +..|.+.++-
T Consensus 126 ~~dV~~ai~~~i~~~G~~~~~~~~GHgig~-~~~h~~~~ip~~~~~-~~~~le~gmV~aIEp~-~s~G~G~v~~ 196 (291)
T cd01088 126 LGEIGEAIEEVIESYGFKPIRNLTGHSIER-YRLHAGKSIPNVKGG-EGTRLEEGDVYAIEPF-ATTGKGYVHD 196 (291)
T ss_pred HHHHHHHHHHHHHHcCCEEeecCCccCccC-ccccCCCccCccCCC-CCCEeCCCCEEEEcee-EECCCCeeec
Confidence 99999999999999999 478999999994 267888653 3333 6789999999999995 5677776654
No 35
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.94 E-value=1.7e-25 Score=242.18 Aligned_cols=365 Identities=18% Similarity=0.238 Sum_probs=268.3
Q ss_pred cceeeecccCCCCCCceeeEEEEEeCCceEEEEeCCCCCHHHHHH--hhc-----CCeEEEeC--C----chHHHHHHHH
Q 007222 180 VAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISF--LKE-----SGVEVRDY--D----AVSSDVVLLQ 246 (612)
Q Consensus 180 i~yltg~~~~~~~~~p~~~a~liv~~~~~~L~~~~~~~~~~~~~~--l~~-----~~v~v~~y--~----~~~~~l~~l~ 246 (612)
..||+||.-.+ ..+++.++..++.+...++.- .... +.. ..+.+..- . ...+.+-.+.
T Consensus 20 ~~WLlGYEfpd--------Tilv~~~~~i~iltSkkKa~~-l~~~~~~~~~~~~~~~v~llvR~k~d~n~~~fdkii~~i 90 (960)
T KOG1189|consen 20 FTWLLGYEFPD--------TILVLCKDKIYILTSKKKAEF-LQKVTNLAQSSEGKPTVNLLVRDKNDDNKGLFDKIIKAI 90 (960)
T ss_pred HHHHhccccCc--------eEEEEecCcEEEEecchhHHH-HHhhcccccCcccCcceEEEecccCccccccHHHHHHHH
Confidence 56999986433 567788888888887655431 1110 110 11322222 1 1233333333
Q ss_pred hccCCCCCCCCCCCEEEEcCC-CCcHH----HHHhcccC--ceeecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 007222 247 SNQLNPPADVQGSDLIWADPN-SCSYA----LYSKLNSD--KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYI 319 (612)
Q Consensus 247 ~~~l~~~~~~~~~~~ig~d~~-~~~~~----~~~~L~~~--~~~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~ 319 (612)
. ..++++|+-+. ..+.. +-+.|... +.+|++-.+..+-++|++.||+.+|+|+.++...|..++
T Consensus 91 k---------~~gk~vGvf~ke~~~G~F~~~W~~~l~~~~fn~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~ 161 (960)
T KOG1189|consen 91 K---------SAGKKVGVFAKEKFQGEFMESWNKRLEAGGFNKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYL 161 (960)
T ss_pred H---------hcCCeeeeecccccchhHHHHHHHHhhhcCCceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24778888753 23333 33455554 468888889999999999999999999999999998654
Q ss_pred -HHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHHh---CCC----CCCCCCeEEEecCCCccc-
Q 007222 320 -IWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASK---EHF----RGLSFPTISSVGPNAAIM- 390 (612)
Q Consensus 320 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~~---~g~----~~~~f~~iv~~G~~~~~~- 390 (612)
..+..++. ....+|..-++..++.+.... .|. ..+.|++|+.+|.+..+-
T Consensus 162 ~~~~~~aiD---------------------~ekkvthskLsD~~e~~I~~~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~ 220 (960)
T KOG1189|consen 162 VDELVEAID---------------------EEKKVTHSKLSDLMESAIEDKKYSPGLDPDLLDMCYPPIIQSGGKYDLKP 220 (960)
T ss_pred HHHHHHHhh---------------------ccchhhhHHHHHHHHHHhhccccCcccCccccccccChhhhcCCcccccc
Confidence 34444443 345678888888877642211 111 346889999999987753
Q ss_pred ccCCCCCCCCcCCCCCeEEEeecceeCCcccceEeeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 007222 391 HYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARL 470 (612)
Q Consensus 391 h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~ 470 (612)
....+ +..| + +++|.+|++|++||++++||+.+ .|+.+|++.|+..+.+|.+++..+|| |+..++||.++.+
T Consensus 221 sa~s~---~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dpssemq~nY~fLl~aqe~il~~lrp-G~ki~dVY~~~l~ 292 (960)
T KOG1189|consen 221 SAVSD---DNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFLLAAQEEILKLLRP-GTKIGDVYEKALD 292 (960)
T ss_pred ccccc---cccc--c-eEEeeccchhhhhhccccceeee-cchHHHHHHHHHHHHHHHHHHHhhcC-CCchhHHHHHHHH
Confidence 22222 3566 4 99999999999999999999999 68999999999999999999999999 9999999999999
Q ss_pred HHHHcCC----CCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCeEeeccccee------cCcceEEEeeeeEEeeC
Q 007222 471 PLWKYGL----DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYE------DGNFGIRLENVLVVTDA 540 (612)
Q Consensus 471 ~~~~~G~----~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~------~g~~gvriEd~v~Vt~~ 540 (612)
++.+.+. ++...+|.||| |+.+|.-..|+.. ++.+|++||||.|.-|+-. .+.+.+-+.|||+|+++
T Consensus 293 ~v~k~~Pel~~~~~k~lG~~iG--lEFREssl~inaK-nd~~lk~gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e~ 369 (960)
T KOG1189|consen 293 YVEKNKPELVPNFTKNLGFGIG--LEFRESSLVINAK-NDRVLKKGMVFNISLGFSNLTNPESKNSYALLLSDTVLVGED 369 (960)
T ss_pred HHHhcCcchhhhhhhhcccccc--eeeeccccccccc-chhhhccCcEEEEeeccccccCcccccchhhhccceeeecCC
Confidence 9999987 46777999999 9999999888888 9999999999999888752 24578889999999999
Q ss_pred CCcccCCCCccccc-eecccCcccCCcccccCCCHHHHHHHHHH-----------------------------HHHHHHH
Q 007222 541 NTKFNFGDKGYLSF-EHITWAPYQIKMINLKSLTPEEIDWLNAY-----------------------------HSKCRDI 590 (612)
Q Consensus 541 ~~~~~~~~~~~~g~-e~LT~~P~~~~li~~~~~~~~e~~~~n~y-----------------------------~~~~~~~ 590 (612)
++ +.||..+....-+.+.+..++|=.-++.= .+...+.
T Consensus 370 ------------~p~~vLT~~~K~~~dv~~~f~~eeeE~~~~~k~~~~~~~~r~~r~a~l~~k~R~e~~~ee~RKehQke 437 (960)
T KOG1189|consen 370 ------------PPAEVLTDSAKAVKDVSYFFKDEEEEEELEKKDPATKVLGRGTRTALLTDKTRNETSAEEKRKEHQKE 437 (960)
T ss_pred ------------CcchhhcccchhhcccceeeccchhhhhhhhccccccccCccccchhccccccccccHHHHHHHHHHH
Confidence 55 99999997777777777766554455444 4556667
Q ss_pred HCCCccHHHHHHHHHc
Q 007222 591 LAPYLDEAELAWLKKA 606 (612)
Q Consensus 591 ~~~~~~~~~~~~l~~~ 606 (612)
|.-.++++.+..|.+.
T Consensus 438 La~qlnee~~~Rls~~ 453 (960)
T KOG1189|consen 438 LADQLNEEALRRLSNQ 453 (960)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7777777777777544
No 36
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.80 E-value=1.1e-18 Score=186.06 Aligned_cols=350 Identities=14% Similarity=0.148 Sum_probs=227.9
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEecCccc------------cceeeecccCCCCCCceeeEEEEEeCCceEEEEeCC
Q 007222 150 GSSVVEKLKELREKLTNE--KARGIIITTLDE------------VAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKR 215 (612)
Q Consensus 150 ~~~~~~Rl~rlr~~m~~~--gld~lll~~~~n------------i~yltg~~~~~~~~~p~~~a~liv~~~~~~L~~~~~ 215 (612)
-+.|..|+.-|+..+.+. +.|.|++.-... ..||.||.- |. ..+++.+...++.+...
T Consensus 8 e~~F~kR~~~l~~~~ne~dG~p~sllv~lG~s~d~npyqk~taLh~wLLgYEF------P~--Tli~l~~~~~~I~ts~~ 79 (1001)
T COG5406 8 EERFEKRSRDLRKHLNEEDGGPDSLLVMLGKSQDVNPYQKNTALHIWLLGYEF------PE--TLIILDDVCTAITTSKK 79 (1001)
T ss_pred HHHHHHHHHHHHHhhhhccCCCceEEEEeccccccChhhhhhHHHHHHHhccC------cc--eEEEEecceEEEEechh
Confidence 356889999999999553 466676643221 679998852 21 34444555555555443
Q ss_pred CCCHHHHHHhhcC---CeEEEeCC--chHHHHHHHHhccCCCCCCCCCCCEEEEcCCCCcH--------HHHHhccc-Cc
Q 007222 216 KVSSEVISFLKES---GVEVRDYD--AVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSY--------ALYSKLNS-DK 281 (612)
Q Consensus 216 ~~~~~~~~~l~~~---~v~v~~y~--~~~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~~~~--------~~~~~L~~-~~ 281 (612)
+.. .....|... .+...-+. .-.+.-+.+....+. -.+..++.||.-...... .+++...+ -+
T Consensus 80 kA~-~lqk~l~~~~~~~v~~n~~~r~k~~eenkKlF~~~i~--~i~s~~k~VG~f~kD~~qgkfi~ew~~i~e~vk~efN 156 (1001)
T COG5406 80 KAI-LLQKGLAETSLNIVVRNKDNRTKNMEENKKLFKGSIY--VIGSENKIVGDFCKDVLQGKFINEWDSIFEPVKSEFN 156 (1001)
T ss_pred hHH-HHHhhhccCcchhhhhhhhhcccCHHHHHHHHhhhhe--ecccCCcccCccchhhhhcccccccchhhhhhhhhcc
Confidence 221 111112110 01111111 111222222221110 011245666654321110 12222222 24
Q ss_pred eeecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHH
Q 007222 282 VLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDK 361 (612)
Q Consensus 282 ~~d~~~~v~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~ 361 (612)
.+|++.-+..+-.+|+..||+.+|.+++..+..|..+...+..... ..-.+|...+...
T Consensus 157 ~~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D---------------------~~~kit~~KlsD~ 215 (1001)
T COG5406 157 ASDVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWD---------------------GAFKITHGKLSDL 215 (1001)
T ss_pred hhhhhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHh---------------------hhhhhccchHHHH
Confidence 6788888999999999999999999999999888866665544332 1234566666666
Q ss_pred HHHHHH-----H----hCC-----CCCCCCCeEEEecCCCcc-cccCCCCCCCCcCCCCCeEEEeecceeCCcccceEee
Q 007222 362 LESFRA-----S----KEH-----FRGLSFPTISSVGPNAAI-MHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRT 426 (612)
Q Consensus 362 l~~~~~-----~----~~g-----~~~~~f~~iv~~G~~~~~-~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~tRT 426 (612)
++...- + +.| -..+.|.||+++|..-.+ |..... +..+ .||.|++.+|.+|+|||+.++||
T Consensus 216 mes~iddv~f~q~~s~~l~~~~~d~lew~ytpiiqsg~~~Dl~psa~s~---~~~l-~gd~vl~s~GiRYn~YCSn~~RT 291 (1001)
T COG5406 216 MESLIDDVEFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSIDLTPSAFSF---PMEL-TGDVVLLSIGIRYNGYCSNMSRT 291 (1001)
T ss_pred hhhhcchhhhhhhcCccccccchhhhhhhcchhhccCceeecccccccC---chhh-cCceEEEEeeeeeccccccccce
Confidence 654110 0 011 123578899999976543 222222 2444 48899999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCC----CCCCCCCcccCCCCcccCCCCCCCC
Q 007222 427 FHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL----DYRHGTGHGVGSYLNVHEGPQSISF 502 (612)
Q Consensus 427 ~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~----~~~h~~GHgiG~~l~~hE~P~~i~~ 502 (612)
+++ .|+.+|++-|+.++.+|...+..+|| |+..++||..+..++.+.|. +|...+|-+|| +..++....+..
T Consensus 292 ~l~-dp~~e~~~Ny~fl~~lQk~i~~~~rp-G~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~ig--iefR~s~~~~nv 367 (1001)
T COG5406 292 ILT-DPDSEQQKNYEFLYMLQKYILGLVRP-GTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIG--IEFRSSQKPFNV 367 (1001)
T ss_pred EEe-CCchHhhhhHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHhcCCccCchHhhhhhhhcc--ccccccccceec
Confidence 999 68999999999999999999999999 99999999999999999887 46778899999 988887665666
Q ss_pred CCCCcccccCCeEeeccccee------cCcceEEEeeeeEEeeC
Q 007222 503 KPRNVPIHASMTATDEPGYYE------DGNFGIRLENVLVVTDA 540 (612)
Q Consensus 503 ~~~~~~l~~gmv~~iEPg~y~------~g~~gvriEd~v~Vt~~ 540 (612)
. ++++|++||+|.|.-|+-. ...+.+.+-||+-|+-+
T Consensus 368 k-n~r~lq~g~~fnis~gf~nl~~~~~~Nnyal~l~dt~qi~ls 410 (1001)
T COG5406 368 K-NGRVLQAGCIFNISLGFGNLINPHPKNNYALLLIDTEQISLS 410 (1001)
T ss_pred c-CCceeccccEEEEeecccccCCCCcccchhhhhccceEeecC
Confidence 6 8899999999999877642 24566777777777766
No 37
>PRK09795 aminopeptidase; Provisional
Probab=99.59 E-value=6.2e-14 Score=150.33 Aligned_cols=109 Identities=18% Similarity=0.317 Sum_probs=82.8
Q ss_pred CCCcccCCccccceeeeCcccCceeEEEeCCCcEEEecchhHHHHhhccCCCEEEEEcCCCccHHHHHHhhC--CCCCEE
Q 007222 15 ITSEYVSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNL--PNDAAI 92 (612)
Q Consensus 15 h~~e~l~~~~~n~~YlTGFtGs~g~llit~~~a~l~TD~RY~eqA~~e~~~~~~v~~~~~~~~~~~~l~~~~--~~~~~v 92 (612)
..|+++++++.|++|||||+|++|++|||+++++||||+||++||++++++ ++++.....+.+.+++.+.+ .++++|
T Consensus 15 ~lDa~lI~~~~n~~YLTGf~g~~g~llIt~~~~~l~td~ry~~qa~~~~~~-~~v~~~~~~~~~~~~L~~~L~~~~~~~I 93 (361)
T PRK09795 15 QLDAVLLSSRQNKQPHLGISTGSGYVVISRESAHILVDSRYYADVEARAQG-YQLHLLDATNTLTTIVNQIIADEQLQTL 93 (361)
T ss_pred CCCEEEECCccccccccCccCCCeEEEEECCCCEEEcCcchHHHHHhhCCC-ceEEEecCCccHHHHHHHHHHhcCCcEE
Confidence 344444478999999999999999999999999999999999999999886 56653321123444555543 367899
Q ss_pred EEcCCcccHHHHHHHHHHhhcCCcEEEEcCCChhhhhh
Q 007222 93 GVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVW 130 (612)
Q Consensus 93 gfE~~~is~~~y~~L~~~l~~~~~~lv~~~~~lv~~lr 130 (612)
|||.+.+++..|+.|++.+. .++++. .++++|
T Consensus 94 g~e~~~~s~~~~~~L~~~l~---~~~~~~---~~~~lR 125 (361)
T PRK09795 94 GFEGQQVSWETAHRWQSELN---AKLVSA---TPDVLR 125 (361)
T ss_pred EEecCcccHHHHHHHHHhcC---cccccc---cHHHHh
Confidence 99999999999999987652 344433 378888
No 38
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=99.37 E-value=1.7e-12 Score=118.08 Aligned_cols=128 Identities=17% Similarity=0.234 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCCEEEecCccccceeeecccCCCCCCceeeEEEEEeCCceEEEEeCCCCCHHHHHHhhcCCeEEEeC
Q 007222 156 KLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLKESGVEVRDY 235 (612)
Q Consensus 156 Rl~rlr~~m~~~gld~lll~~~~ni~yltg~~~~~~~~~p~~~a~liv~~~~~~L~~~~~~~~~~~~~~l~~~~v~v~~y 235 (612)
|++|+|+.|+++|+|++|+++++|++||||++.. .+....+++++.++.+++++.........+. ....+++.|
T Consensus 1 Rl~rl~~~m~~~gid~lll~~~~ni~YltG~~~~----~~~~~~~l~i~~~~~~l~~~~~~~~~~~~~~--~~~~~v~~~ 74 (132)
T PF01321_consen 1 RLERLRAAMAEAGIDALLLTSPENIRYLTGFRWQ----PGERPVLLVITADGAVLFVPKGEYERAAEES--APDDEVVEY 74 (132)
T ss_dssp HHHHHHHHHHHTT-SEEEEESHHHHHHHHS--ST-----TSSEEEEEEESSSEEEEEEGGGHHHHHHHH--TTSSEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEcChhhceEecCCCcC----CCcceEEEEecccCcEEEeccccHHHHHHhh--cCCceEEEE
Confidence 8999999999999999999999999999999621 1111234458888778999854443222222 234688999
Q ss_pred CchHHHHHHHHhccCCCCCCCCCCCEEEEcCCCCcHHHHHhc----ccCceeecCCccchhhhc
Q 007222 236 DAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKL----NSDKVLLQQSPLALAKAI 295 (612)
Q Consensus 236 ~~~~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~~~~~~~~~L----~~~~~~d~~~~v~~lR~i 295 (612)
.+..+.+..++++.+ ...++||+|...+|...++.| ++.+++++++++..+|+|
T Consensus 75 ~~~~~~~~~~l~~~~------~~~~~igve~~~~~~~~~~~l~~~~~~~~~v~~~~~i~~~R~I 132 (132)
T PF01321_consen 75 EDPYEAIAEALKKLG------PEGKRIGVEPDSLSAAEYQRLQEALPGAEFVDASPLIEELRMI 132 (132)
T ss_dssp STHHHHHHHHHHHHT------TTTSEEEEETTTSBHHHHHHHHHHSTTSEEEEEHHHHHHHHTS
T ss_pred ecccchHHHHHHHhC------CCCCEEEEcCCcChHHHHHHHHHhCCCCEEEEcHHHHHHcCcC
Confidence 884455555444232 235999999988898877665 556899999999999986
No 39
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=99.35 E-value=2.6e-12 Score=116.87 Aligned_cols=112 Identities=22% Similarity=0.367 Sum_probs=91.9
Q ss_pred ccceeEEecCCCcccCCccccceeeeCc---ccCceeEE-EeCCCcEEEec-chhHHHHhhccCCCEEEEEcCC-CccHH
Q 007222 6 MLSSFLLKIITSEYVSARDKRREFVSGF---TGSAGLAL-ITMNEALLWTD-GRYFLQATQELTGEWKLMRMLE-DPAVD 79 (612)
Q Consensus 6 ~lda~l~d~h~~e~l~~~~~n~~YlTGF---tGs~g~ll-it~~~a~l~TD-~RY~eqA~~e~~~~~~v~~~~~-~~~~~ 79 (612)
.+|++++ +++.|++||||| +++.++++ |++++++||+| ++|..++++.... .+++.... .+.+.
T Consensus 13 gid~lll---------~~~~ni~YltG~~~~~~~~~~~l~i~~~~~~l~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 82 (132)
T PF01321_consen 13 GIDALLL---------TSPENIRYLTGFRWQPGERPVLLVITADGAVLFVPKGEYERAAEESAPD-DEVVEYEDPYEAIA 82 (132)
T ss_dssp T-SEEEE---------ESHHHHHHHHS--ST-TSSEEEEEEESSSEEEEEEGGGHHHHHHHHTTS-SEEEEESTHHHHHH
T ss_pred CCCEEEE---------cChhhceEecCCCcCCCcceEEEEecccCcEEEeccccHHHHHHhhcCC-ceEEEEecccchHH
Confidence 4677777 678999999999 99999988 89999999999 9999988887344 56655443 46688
Q ss_pred HHHHhhCCCCCEEEEcCCcccHHHHHHHHHHhhcCCcEEEEcCCChhhhhh
Q 007222 80 VWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVW 130 (612)
Q Consensus 80 ~~l~~~~~~~~~vgfE~~~is~~~y~~L~~~l~~~~~~lv~~~~~lv~~lr 130 (612)
++|++...+.++||||.+.+|+..|+.|++.++ +.++++. +++|+++|
T Consensus 83 ~~l~~~~~~~~~igve~~~~~~~~~~~l~~~~~--~~~~v~~-~~~i~~~R 130 (132)
T PF01321_consen 83 EALKKLGPEGKRIGVEPDSLSAAEYQRLQEALP--GAEFVDA-SPLIEELR 130 (132)
T ss_dssp HHHHHHTTTTSEEEEETTTSBHHHHHHHHHHST--TSEEEEE-HHHHHHHH
T ss_pred HHHHHhCCCCCEEEEcCCcChHHHHHHHHHhCC--CCEEEEc-HHHHHHcC
Confidence 889987666699999999999999999999986 4699999 89999988
No 40
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.14 E-value=8.6e-10 Score=109.94 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=129.0
Q ss_pred CCCCCCHHHHHHHHHHHHH---HhCC-CCCCCCCeEEEecCCCcccccCCCCCCCCcCCCCCeEEEeecceeCCcccceE
Q 007222 349 GTVKLTEVTVSDKLESFRA---SKEH-FRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDIT 424 (612)
Q Consensus 349 ~~~g~tE~ev~~~l~~~~~---~~~g-~~~~~f~~iv~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~~~gy~~d~t 424 (612)
++||||-.||...++..-. ...| ..+.+||+-++ -|..-.||.|+.+...+|+.+|+..+|+|.+.+|-.-|.+
T Consensus 106 ikPGmtm~ei~e~iEnttR~li~e~gl~aGi~FPtG~S--lN~cAAHyTpNaGd~tVLqydDV~KiDfGthi~GrIiDsA 183 (397)
T KOG2775|consen 106 IKPGMTMIEICETIENTTRKLILENGLNAGIGFPTGCS--LNHCAAHYTPNAGDKTVLKYDDVMKIDFGTHIDGRIIDSA 183 (397)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHhccccccccCCCccc--ccchhhhcCCCCCCceeeeecceEEEeccccccCeEeeee
Confidence 5899999999999987321 1222 24578887655 3445579999988778999999999999999999999999
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCC----------CCCCCCCcccCCCCccc
Q 007222 425 RTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL----------DYRHGTGHGVGSYLNVH 494 (612)
Q Consensus 425 RT~~~G~p~~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~----------~~~h~~GHgiG~~l~~h 494 (612)
.|+.|. +....+..++++|-..+++.+-- -++..+|-+++++++..+-. ..+.-.||+|+.| .+|
T Consensus 184 FTv~F~---p~~d~Ll~AvreaT~tGIkeaGi-DvRlcdiG~aiqEVmeSyEvEi~Gk~~~VKpIrnLnGHSI~~y-rIH 258 (397)
T KOG2775|consen 184 FTVAFN---PKYDPLLAAVREATNTGIKEAGI-DVRLCDIGEAIQEVMESYEVEINGKTYQVKPIRNLNGHSIAQY-RIH 258 (397)
T ss_pred eEEeeC---ccccHHHHHHHHHHhhhhhhcCc-eeeehhhhHHHHHHhhheEEEeCCceecceeccccCCCcccce-Eee
Confidence 999993 44567888999999999998775 78999999999999998643 2345679999986 466
Q ss_pred CC---CCCCCCCCCCcccccCCeEeecc
Q 007222 495 EG---PQSISFKPRNVPIHASMTATDEP 519 (612)
Q Consensus 495 E~---P~~i~~~~~~~~l~~gmv~~iEP 519 (612)
-+ |. +..+ ..+.+++|.+++||.
T Consensus 259 ~gksVPi-Vkgg-e~trmee~e~yAIET 284 (397)
T KOG2775|consen 259 GGKSVPI-VKGG-EQTRMEEGEIYAIET 284 (397)
T ss_pred cCcccce-ecCC-cceeecCCeeEEEEe
Confidence 54 43 4444 788999999999996
No 41
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.06 E-value=3e-09 Score=108.80 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=129.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccccCCCCCCCHHHHHHHHHHHHHH----
Q 007222 293 KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRAS---- 368 (612)
Q Consensus 293 R~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ev~~~l~~~~~~---- 368 (612)
..|-++.-+..+|-|+.|+..++..+.+. +.+|.+-.|+...-+.+.+.
T Consensus 13 ~tia~~~vvtKYk~AgeI~n~~lk~V~~~---------------------------~~~gasv~eiC~~GD~~i~E~t~k 65 (398)
T KOG2776|consen 13 KTIANDSVVTKYKMAGEIVNKVLKSVVEL---------------------------CQPGASVREICEKGDSLILEETGK 65 (398)
T ss_pred cccccHHHHhhhhhHHHHHHHHHHHHHHH---------------------------hcCCchHHHHHHhhhHHHHHHHHH
Confidence 45667788899999999999999988765 47999999998776654221
Q ss_pred -----hCCCCCCCCCeEEEecCCCcccccCCCCCC-CCcCCCCCeEEEeecceeCCcccceEeeeecCCCC-----HHHH
Q 007222 369 -----KEHFRGLSFPTISSVGPNAAIMHYSPQSET-CAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPS-----AHEK 437 (612)
Q Consensus 369 -----~~g~~~~~f~~iv~~G~~~~~~h~~p~~~~-~~~l~~gd~v~iD~g~~~~gy~~d~tRT~~~G~p~-----~~~~ 437 (612)
+.-..|.+|||.++ .|...+||.|-..+ +-.|++||+|.||+|++.+||.+-++.|+++|+++ ....
T Consensus 66 iYK~eK~~~KGIAfPT~Is--vnncv~h~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kA 143 (398)
T KOG2776|consen 66 IYKKEKDFEKGIAFPTSIS--VNNCVCHFSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKA 143 (398)
T ss_pred HHhhhhhhhccccccceec--ccceeeccCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchh
Confidence 22335789999876 56677899986433 67999999999999999999999999999998644 5677
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCC
Q 007222 438 ACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL 477 (612)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~ 477 (612)
++..++.-|.+++++.++| |.+-..|-+++.+....++.
T Consensus 144 DvI~AAh~A~eaa~rllkp-gn~n~~vT~~i~k~aas~~c 182 (398)
T KOG2776|consen 144 DVIAAAHLAAEAALRLLKP-GNTNTQVTRAIVKTAASYGC 182 (398)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhCC
Confidence 8888889999999999999 99999999999999998876
No 42
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=98.27 E-value=0.00017 Score=78.18 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=82.6
Q ss_pred ecCCCcccCCccccceeeeCccc--Cc--eeEEEeCCC-cEEEecchhHHHHhhccCC---CEEEEEcCCC-----ccHH
Q 007222 13 KIITSEYVSARDKRREFVSGFTG--SA--GLALITMNE-ALLWTDGRYFLQATQELTG---EWKLMRMLED-----PAVD 79 (612)
Q Consensus 13 d~h~~e~l~~~~~n~~YlTGFtG--s~--g~llit~~~-a~l~TD~RY~eqA~~e~~~---~~~v~~~~~~-----~~~~ 79 (612)
+...+.++..++.|++|+|||+. .. ..+++..+. .+|+++++|.+++..+... .+........ ..+.
T Consensus 23 ~~~~~~~~~~~~~n~~yltg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (384)
T COG0006 23 EAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRGRDEEAAKETSWIKLENVEVYEDDEDPAAPLDLLG 102 (384)
T ss_pred HcCCcEEEecCCCceEEEeCCCCCcccceEEEEEcCCCceEEEEcchhHHHHHhhcccccCceEEEecCCccccHHHHHH
Confidence 44556666789999999999994 33 344555554 8999999999999988742 1444332211 1244
Q ss_pred HHHHhhCCCCCEEEEcCCc--ccHHHHHHHHHHhhcCCcEEEEcCCChhhhhh
Q 007222 80 VWMANNLPNDAAIGVDPWC--VSIDTAQRWERAFAKKQQKLVQTSTNLVDKVW 130 (612)
Q Consensus 80 ~~l~~~~~~~~~vgfE~~~--is~~~y~~L~~~l~~~~~~lv~~~~~lv~~lr 130 (612)
+++...-...+++|+|... +++..++.+++.+.. .++++. .++++++|
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~--~~~~~~-~~~i~~lR 152 (384)
T COG0006 103 ALLEELGLAGKRIGIESASIFLTLAAFERLQAALPR--AELVDA-SDLVDRLR 152 (384)
T ss_pred HHHHhccccccceEEEeccCccCHHHHHHHHhhCCC--CEEecc-HHHHHHHH
Confidence 4444422247899999886 899999999998863 389998 89999999
No 43
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=98.14 E-value=5.7e-06 Score=89.88 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=72.6
Q ss_pred ccceeEEecCCCcccCCccccceeeeCcccCc----eeEEEeCCC-cEEEecchhHHHHhhccCCC-EEEEE-----c--
Q 007222 6 MLSSFLLKIITSEYVSARDKRREFVSGFTGSA----GLALITMNE-ALLWTDGRYFLQATQELTGE-WKLMR-----M-- 72 (612)
Q Consensus 6 ~lda~l~d~h~~e~l~~~~~n~~YlTGFtGs~----g~llit~~~-a~l~TD~RY~eqA~~e~~~~-~~v~~-----~-- 72 (612)
.+|++|+ +++.|++|||||++.. .++||+.++ .+|+++.++..+|+.++... -.+.. .
T Consensus 26 ~lDalli---------~~~~ni~YltG~~~~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (391)
T TIGR02993 26 GIDLLIV---------TDPSNMAWLTGYDGWSFYVHQCVLLPPEGEPIWYGRGQDANGAKRTAFMDHDNIVGYPDHYVQS 96 (391)
T ss_pred CCCEEEE---------cCcccceeeccCCCCceEEEEEEEEcCCCceEEEehhhhhhhHhheeeccccceeecccccccC
Confidence 4666666 7799999999999864 456677554 56666555555565443110 01110 0
Q ss_pred --C-CCccHHHHHHhhCCCCCEEEEcCCc--ccHHHHHHHHHHhhcCCcEEEEcCCChhhhhh
Q 007222 73 --L-EDPAVDVWMANNLPNDAAIGVDPWC--VSIDTAQRWERAFAKKQQKLVQTSTNLVDKVW 130 (612)
Q Consensus 73 --~-~~~~~~~~l~~~~~~~~~vgfE~~~--is~~~y~~L~~~l~~~~~~lv~~~~~lv~~lr 130 (612)
. ....+.+.+++.-...++||||.+. +|+..|+.|++.++ ++++++. +.+++++|
T Consensus 97 ~~~~~~~~~~~~l~~~g~~~~~ig~e~~~~~~~~~~~~~l~~~l~--~~~~~d~-~~~~~~lR 156 (391)
T TIGR02993 97 TERHPMDYLSEILQDRGWDSLTIGVEMDNYYFSAAAFASLQKHLP--NARFVDA-TALVNWQR 156 (391)
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEecCCCccCHHHHHHHHHhCC--CCEEEeh-HHHHHHHH
Confidence 0 0112444455411123479999875 89999999999885 4689998 89999999
No 44
>PRK14575 putative peptidase; Provisional
Probab=97.65 E-value=0.00021 Score=78.12 Aligned_cols=113 Identities=8% Similarity=0.067 Sum_probs=75.8
Q ss_pred ccceeEEecCCCcccCCccccceeeeCcccCc---------eeEEEeCCC---cEEEecchhHHHHhhccCC----CEEE
Q 007222 6 MLSSFLLKIITSEYVSARDKRREFVSGFTGSA---------GLALITMNE---ALLWTDGRYFLQATQELTG----EWKL 69 (612)
Q Consensus 6 ~lda~l~d~h~~e~l~~~~~n~~YlTGFtGs~---------g~llit~~~---a~l~TD~RY~eqA~~e~~~----~~~v 69 (612)
.||++++ +++.|++|||||.+.. ..++|+.+. .+|++..-....++.+... .+.+
T Consensus 24 glD~lvl---------~~p~n~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~i~p~~E~~~~~~~~~~~~~~~~~~ 94 (406)
T PRK14575 24 NIDAVIV---------TTCDNFYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLIIMNEFEAASLTLDMPNAELKTFPV 94 (406)
T ss_pred CCCEEee---------cCcchheeecccccccceecccCCceEEEEEcCCCCCceEEechhhhhhhcccccccccccCCc
Confidence 5677776 7899999999998743 336788773 3477777666666654321 0122
Q ss_pred EEc-C-CC------------------c----cHHHHHHhhCCCCCEEEEcCCcccHHHHHHHHHHhhcCCcEEEEcCCCh
Q 007222 70 MRM-L-ED------------------P----AVDVWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNL 125 (612)
Q Consensus 70 ~~~-~-~~------------------~----~~~~~l~~~~~~~~~vgfE~~~is~~~y~~L~~~l~~~~~~lv~~~~~l 125 (612)
... . .+ . .+.+.|++.....++||+|.+.++...|+.|++.++ ++++++. +.+
T Consensus 95 ~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~igve~~~~~~~~~~~l~~~lp--~~~~~d~-~~~ 171 (406)
T PRK14575 95 WVDVDDPFNMRDSANNNKERPIGPPIESVCNILKDALNDARVLNKKIAIDLNIMSNGGKRVIDAVMP--NVDFVDS-SSI 171 (406)
T ss_pred eEeeeccccccchhhhhhcCCCCCCHHHHHHHHHHHHHhcCCcCCEEEEccCCCCHHHHHHHHHhCC--CCeEEEc-HHH
Confidence 211 1 11 1 122334332225579999999999999999998875 4689998 899
Q ss_pred hhhhh
Q 007222 126 VDKVW 130 (612)
Q Consensus 126 v~~lr 130 (612)
++++|
T Consensus 172 l~~lR 176 (406)
T PRK14575 172 FNELR 176 (406)
T ss_pred HHHHH
Confidence 99999
No 45
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.00086 Score=73.92 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCCEEEecCccc------------cceeeecccCCCCCCceeeEEEEEeCCceEEEEeCCCCCHHHHH
Q 007222 156 KLKELREKLTNEKARGIIITTLDE------------VAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVIS 223 (612)
Q Consensus 156 Rl~rlr~~m~~~gld~lll~~~~n------------i~yltg~~~~~~~~~p~~~a~liv~~~~~~L~~~~~~~~~~~~~ 223 (612)
++.|+|+.|++.+++|+|+.+-|. .+|++||.|+. ++++||..++.|++|++.+. ++..
T Consensus 11 ~~~~~~~~~~~~~i~aYi~Ps~DaH~sEy~~~~D~R~~flsGFsGsa--------g~Avit~~~a~lwtD~RY~~-QA~~ 81 (606)
T KOG2413|consen 11 ELMRLRELMKSPPIDAYILPSTDAHQSEYIADRDERRAFLSGFSGSA--------GTAVITEEEAALWTDGRYFQ-QAEQ 81 (606)
T ss_pred HHHHHHHHhcCCCceEEEccCCchhhhhhhcchhhhhhhhcccCCCc--------ceEEEecCcceEEEccHHHH-HHHh
Confidence 788999999999999999988664 89999999864 78999999999999998765 5666
Q ss_pred HhhcCCeE-EEeCCc---hHHHHHHHHhccCCCCCCCCCCCEEEEcCCCCcHHHHHhcc
Q 007222 224 FLKESGVE-VRDYDA---VSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLN 278 (612)
Q Consensus 224 ~l~~~~v~-v~~y~~---~~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~~~~~~~~~L~ 278 (612)
.+.. +++ .+...+ +.++|...+ ..+++||+||.-+++..+..+.
T Consensus 82 qld~-~W~l~k~~~~~~~v~~wl~~~l----------~~~~~vG~Dp~Lis~~~~~~~~ 129 (606)
T KOG2413|consen 82 QLDS-NWTLMKMGEDVPTVEEWLAKVL----------PEGSRVGIDPTLISFDAWKQLE 129 (606)
T ss_pred hhcc-cceeeeccCCCccHHHHHHHhC----------CCccccccCcceechhHHHhHH
Confidence 6643 344 333433 344454443 2478899999878877765543
No 46
>PLN03158 methionine aminopeptidase; Provisional
Probab=96.98 E-value=0.0035 Score=67.94 Aligned_cols=113 Identities=15% Similarity=0.116 Sum_probs=81.1
Q ss_pred cccceEeeeecCCCC--HHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCC-C---CCCC--cccCCC
Q 007222 419 GTTDITRTFHFGKPS--AHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDY-R---HGTG--HGVGSY 490 (612)
Q Consensus 419 y~~d~tRT~~~G~p~--~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~-~---h~~G--HgiG~~ 490 (612)
..+++.|+..+..|. +.+|++.+.+.++++++.++++| |++-.||+.++++.+.+.|... . +... ...|
T Consensus 127 ~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irp-GvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts-- 203 (396)
T PLN03158 127 PNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKP-GVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTS-- 203 (396)
T ss_pred cccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHcCCccccccccCCCceeeec--
Confidence 356778888887655 45678888999999999999999 9999999999999988877421 1 1111 1122
Q ss_pred CcccCCCCCCCCCCCCcccccCCeEeecccceecCcceEEEeeeeEEee
Q 007222 491 LNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 539 (612)
Q Consensus 491 l~~hE~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~ 539 (612)
++ +. .....|++.+|++|+++.++.+.+..|..+ -+..|++|++
T Consensus 204 ~N--~~--i~Hgip~~r~L~~GDiV~iDvg~~~~GY~a-D~tRT~~VG~ 247 (396)
T PLN03158 204 VN--EV--ICHGIPDARKLEDGDIVNVDVTVYYKGCHG-DLNETFFVGN 247 (396)
T ss_pred cc--cc--ccCCCCCCccCCCCCEEEEEEeEEECCEEE-eEEeEEEcCC
Confidence 11 10 001112678999999999999999887544 8889998853
No 47
>PRK14576 putative endopeptidase; Provisional
Probab=96.81 E-value=0.0055 Score=66.97 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=69.0
Q ss_pred ccceeEEecCCCcccCCccccceeeeCcccC-------ceeEE--EeCCC---cEEEecchhHHHHhhccCC----CEEE
Q 007222 6 MLSSFLLKIITSEYVSARDKRREFVSGFTGS-------AGLAL--ITMNE---ALLWTDGRYFLQATQELTG----EWKL 69 (612)
Q Consensus 6 ~lda~l~d~h~~e~l~~~~~n~~YlTGFtGs-------~g~ll--it~~~---a~l~TD~RY~eqA~~e~~~----~~~v 69 (612)
.+|++++ +++.|++|||||... .+.++ ++.+. .++++..=....++..++. .+.+
T Consensus 24 gldalll---------~~p~ni~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~i~~~~e~~~~~~~~~~~~~~~~~~ 94 (405)
T PRK14576 24 GIDALVV---------TVCDNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEFEAASTHFDMPNSVLKTFPV 94 (405)
T ss_pred CCCEEEe---------ccccceeeeccccccceeeeccCCeEEEEecCCCCCCcEEEechhhhhhhhccccccccccCCc
Confidence 4666666 779999999999965 12232 33452 3667744444444322110 0111
Q ss_pred E-Ec-CCC---------------------ccHHHHHHhhCCCCCEEEEcCCcccHHHHHHHHHHhhcCCcEEEEcCCChh
Q 007222 70 M-RM-LED---------------------PAVDVWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLV 126 (612)
Q Consensus 70 ~-~~-~~~---------------------~~~~~~l~~~~~~~~~vgfE~~~is~~~y~~L~~~l~~~~~~lv~~~~~lv 126 (612)
. .. +.. ..+.+.|++.-...++||+|.+.++...|..|.+.++ +.++++. +.++
T Consensus 95 ~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~rigve~~~~~~~~~~~l~~~~~--~~~~vd~-~~~l 171 (405)
T PRK14576 95 WVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDAGVLDKTIAIELQAMSNGGKGVLDKVAP--GLKLVDS-TALF 171 (405)
T ss_pred eEeecCCcccchhhhccccCCCCcHHHHHHHHHHHHHHhCCCCCEEEEccCCCCHHHHHHHHhhCC--CCeEEEc-HHHH
Confidence 1 11 100 1122334442124579999999999999999988775 4689998 8899
Q ss_pred hhhh
Q 007222 127 DKVW 130 (612)
Q Consensus 127 ~~lr 130 (612)
+++|
T Consensus 172 ~~lR 175 (405)
T PRK14576 172 NEIR 175 (405)
T ss_pred HHHH
Confidence 9999
No 48
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.72 E-value=0.011 Score=59.41 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCC-CC--cccCCCCcccC-CCCCCCCCCCCcc
Q 007222 434 AHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHG-TG--HGVGSYLNVHE-GPQSISFKPRNVP 508 (612)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~-~G--HgiG~~l~~hE-~P~~i~~~~~~~~ 508 (612)
+.+|++.+.+.+++.++.++++| |++-.+|..++++.+++.|.. ..+. .+ ..+. ..... .|. ..|.+.+
T Consensus 2 ~~lr~A~~i~~~~~~~~~~~~~p-G~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~h---~~~~~~~ 75 (238)
T cd01086 2 EGMREAGRIVAEVLDELAKAIKP-GVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSIC--TSVNEVVCH---GIPDDRV 75 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHcCCCcccccCCCCCccee--cCCCCceeC---CCCCCcc
Confidence 45789999999999999999999 999999999999999999873 1111 01 1111 11111 111 1125789
Q ss_pred cccCCeEeecccceecCcceEEEeeeeEEee
Q 007222 509 IHASMTATDEPGYYEDGNFGIRLENVLVVTD 539 (612)
Q Consensus 509 l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~ 539 (612)
|++|+++.++++....|. ...++.|++|.+
T Consensus 76 l~~Gd~v~id~g~~~~GY-~ad~~RT~~~G~ 105 (238)
T cd01086 76 LKDGDIVNIDVGVELDGY-HGDSARTFIVGE 105 (238)
T ss_pred cCCCCEEEEEEEEEECCE-EEEEEEEEECCC
Confidence 999999999999776664 458999998864
No 49
>PRK05716 methionine aminopeptidase; Validated
Probab=96.01 E-value=0.045 Score=55.58 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC--CCCCCCcc----cCCCCcccCCCCCCCCCCCCcc
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHG----VGSYLNVHEGPQSISFKPRNVP 508 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~--~~h~~GHg----iG~~l~~hE~P~~i~~~~~~~~ 508 (612)
.+|++.+.+.+++.++.+.++| |++-.+|+.++++.+.+.|.. +.+..++. .| .+ .-.| ...+++.+
T Consensus 13 ~~r~A~~i~~~~~~~a~~~i~p-G~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g--~~-~~~~---h~~~~~~~ 85 (252)
T PRK05716 13 KMRVAGRLAAEVLDEIEPHVKP-GVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTS--VN-EVVC---HGIPSDKV 85 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEec--cc-ceee---cCCCCCcc
Confidence 4578889999999999999999 999999999999999998863 11111111 11 11 0001 11126789
Q ss_pred cccCCeEeecccceecCcceEEEeeeeEEe
Q 007222 509 IHASMTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 509 l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
|++||++.++.|....| +..-+.-|++|.
T Consensus 86 l~~Gd~v~id~g~~~~g-Y~~d~~RT~~vG 114 (252)
T PRK05716 86 LKEGDIVNIDVTVIKDG-YHGDTSRTFGVG 114 (252)
T ss_pred cCCCCEEEEEEEEEECC-EEEEeEEEEECC
Confidence 99999999999877644 456677777773
No 50
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=95.73 E-value=0.068 Score=55.77 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCC
Q 007222 434 AHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASM 513 (612)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gm 513 (612)
+..+++.+.+.++++++.+.++| |++..||...+.+.+.+.|....+.++=+++. ...|-.|. .+ ++.+|++|+
T Consensus 2 ~~~r~Aa~I~~~a~~~~~~~i~p-G~te~ei~~~~~~~i~~~G~~~afp~~is~n~-~~~H~~p~---~~-d~~~l~~GD 75 (291)
T cd01088 2 EKYREAGEIHRQVRKYAQSLIKP-GMTLLEIAEFVENRIRELGAGPAFPVNLSINE-CAAHYTPN---AG-DDTVLKEGD 75 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHcCCCCCCCceeccCC-EeeCCCCC---CC-CCcccCCCC
Confidence 35788899999999999999999 99999999999999999885322222111110 01122221 12 467899999
Q ss_pred eEeecccceecC
Q 007222 514 TATDEPGYYEDG 525 (612)
Q Consensus 514 v~~iEPg~y~~g 525 (612)
++.++.|...+|
T Consensus 76 vV~iD~G~~~dG 87 (291)
T cd01088 76 VVKLDFGAHVDG 87 (291)
T ss_pred EEEEEEEEEECC
Confidence 999999987765
No 51
>PRK12896 methionine aminopeptidase; Reviewed
Probab=95.42 E-value=0.08 Score=53.83 Aligned_cols=108 Identities=20% Similarity=0.161 Sum_probs=72.5
Q ss_pred eEeeeecCCCCH--HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCC---CCC--cccCCCCccc
Q 007222 423 ITRTFHFGKPSA--HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRH---GTG--HGVGSYLNVH 494 (612)
Q Consensus 423 ~tRT~~~G~p~~--~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h---~~G--HgiG~~l~~h 494 (612)
-.|++.+..+.+ ..|++.+.+.+++.++.+.++| |++-.||...++..+.+.|.. ..+ ... -..| .+ .
T Consensus 4 ~~~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~p-G~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~n-~ 79 (255)
T PRK12896 4 EGRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEP-GMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCIS--VN-E 79 (255)
T ss_pred cCCceeECCHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEec--CC-C
Confidence 357877854443 4577888888899999999999 999999999999999998863 111 111 1122 11 1
Q ss_pred CCCCCCCCCCCCcccccCCeEeecccceecCcceEEEeeeeEEe
Q 007222 495 EGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 495 E~P~~i~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
..+. ..|++.+|++|.++.++.|....| +..-+.-|+++.
T Consensus 80 ~~~h---~~p~~~~l~~Gd~v~iD~g~~~~g-Y~aD~~RT~~vG 119 (255)
T PRK12896 80 EVAH---GIPGPRVIKDGDLVNIDVSAYLDG-YHGDTGITFAVG 119 (255)
T ss_pred eeEe---cCCCCccCCCCCEEEEEEeEEECc-EEEeeEEEEECC
Confidence 1111 112568999999999999876654 345566666664
No 52
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=95.14 E-value=0.089 Score=53.50 Aligned_cols=100 Identities=17% Similarity=0.074 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCCC----CCCCcccCCCCcccCCCCCCCCCCCCcccc
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYR----HGTGHGVGSYLNVHEGPQSISFKPRNVPIH 510 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~~----h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~ 510 (612)
..|++-+.+.++++.+...++| |++..||+..+++++.+.|..-. ++..-.+. +++.|--.--.++ ++.+|+
T Consensus 13 k~r~Ag~i~a~~l~~~~~~v~p-Gvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~c--iSvNe~v~HgiP~-d~~vlk 88 (255)
T COG0024 13 KMREAGKIAAKALKEVASLVKP-GVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTC--ISVNEVVAHGIPG-DKKVLK 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHcCceehhccCcCCCcceE--eehhheeeecCCC-CCcccC
Confidence 3566677778888888999999 99999999999999998765211 11222233 3332211000111 578999
Q ss_pred cCCeEeecccceecCcceEEEeeeeEEee
Q 007222 511 ASMTATDEPGYYEDGNFGIRLENVLVVTD 539 (612)
Q Consensus 511 ~gmv~~iEPg~y~~g~~gvriEd~v~Vt~ 539 (612)
+|.++.|.-|...+|..|= ..-|+.|.+
T Consensus 89 ~GDiv~IDvg~~~dG~~~D-sa~T~~vg~ 116 (255)
T COG0024 89 EGDIVKIDVGAHIDGYIGD-TAITFVVGE 116 (255)
T ss_pred CCCEEEEEEEEEECCeeee-EEEEEECCC
Confidence 9999999999998876442 333455553
No 53
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.19 Score=51.44 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC--------CCCCCCcccCCCCcccCCCCCCCCCCCCc
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--------YRHGTGHGVGSYLNVHEGPQSISFKPRNV 507 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~--------~~h~~GHgiG~~l~~hE~P~~i~~~~~~~ 507 (612)
+|++....++.++.+..+++| |++..|||.++.+..-+.|-+ |+.++=-+|-.. -.|--| +.+
T Consensus 125 mR~ac~LarevLd~Aa~~v~P-gvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEv-iCHGIP-------D~R 195 (369)
T KOG2738|consen 125 MRKACRLAREVLDYAATLVRP-GVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEV-ICHGIP-------DSR 195 (369)
T ss_pred HHHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhhe-eecCCC-------CcC
Confidence 466777778889999999999 999999999999988887641 222221112110 012112 788
Q ss_pred ccccCCeEeecccceecCcceEEEeeeeEEee
Q 007222 508 PIHASMTATDEPGYYEDGNFGIRLENVLVVTD 539 (612)
Q Consensus 508 ~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~ 539 (612)
+|+.|.++.|...+|..|..|= +.+|++|.+
T Consensus 196 pLedGDIvNiDVtvY~~GyHGD-lneTffvG~ 226 (369)
T KOG2738|consen 196 PLEDGDIVNIDVTVYLNGYHGD-LNETFFVGN 226 (369)
T ss_pred cCCCCCEEeEEEEEEeccccCc-cccceEeec
Confidence 9999999999999998876553 667788876
No 54
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=91.58 E-value=1.3 Score=48.21 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCC--CCCcccCC--CCcc-----cCCCCCCCCCCC
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRH--GTGHGVGS--YLNV-----HEGPQSISFKPR 505 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h--~~GHgiG~--~l~~-----hE~P~~i~~~~~ 505 (612)
.|++-+.+.+++..+.+.++| |++..||+..+.+.+++.+-. |.. ...+|+++ ++.+ |-.|. ... +
T Consensus 22 ~r~Aa~Ia~~~l~~~~~~ikp-G~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vSvN~~v~H~~P~--~~d-~ 97 (389)
T TIGR00495 22 YKMAGEIANNVLKSVVEACSP-GAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCISVNNCVGHFSPL--KSD-Q 97 (389)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEecCCeeeCCCCC--CCC-C
Confidence 466677778888889999999 999999999998888875421 111 11223221 0222 22231 011 2
Q ss_pred CcccccCCeEeecccceecCcceEEEeeeeEEee
Q 007222 506 NVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 539 (612)
Q Consensus 506 ~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~ 539 (612)
+.+|++|.++.|.-|....| +..-+..|++|.+
T Consensus 98 ~~~Lk~GDvVkIDlG~~idG-Y~aD~arTv~vG~ 130 (389)
T TIGR00495 98 DYILKEGDVVKIDLGCHIDG-FIALVAHTFVVGV 130 (389)
T ss_pred CcCcCCCCEEEEEEEEEECC-EEEEEEEEEEECC
Confidence 47899999999999998877 4667888999864
No 55
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=91.30 E-value=0.59 Score=42.94 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=52.2
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCEEEecCc----------------cccceeeecccCCCCCCceeeEEEEE-eC--CceE
Q 007222 149 AGSSVVEKLKELREKLTNEKARGIIITTL----------------DEVAWLYNIRGTDVPYCPVVHAFAIV-TT--NAAF 209 (612)
Q Consensus 149 ~~~~~~~Rl~rlr~~m~~~gld~lll~~~----------------~ni~yltg~~~~~~~~~p~~~a~liv-~~--~~~~ 209 (612)
+.+++.+|.++|.+.|.+. .++||.+. .|+.||||+.-.+ +++++ .. ++.+
T Consensus 2 ~~~~~~~RR~~l~~~l~~~--~~vil~~~~~~~~~~D~~y~FrQ~s~F~YLTG~~ep~--------~~lvl~~~~~~~~~ 71 (134)
T PF05195_consen 2 PAEEYAERRKKLAEKLPDN--SIVILPGGPEKYRSNDIEYPFRQDSNFYYLTGFNEPD--------AVLVLKDGESGKST 71 (134)
T ss_dssp EHHHHHHHHHHHHHHSHSS--EEEEEE----EEEETTEEE-----HHHHHHH---STT---------EEEEEECTTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCC--cEEEEECCCeeeecCCCccccccCCcEEEEeCCCCCC--------EEEEEecCCCCeEE
Confidence 4578999999999999973 24444432 2599999986432 56666 32 4788
Q ss_pred EEEeCCCCCH--------HHHHHhhcCCe-EEEeCCchHHHHHHHHh
Q 007222 210 LYVDKRKVSS--------EVISFLKESGV-EVRDYDAVSSDVVLLQS 247 (612)
Q Consensus 210 L~~~~~~~~~--------~~~~~l~~~~v-~v~~y~~~~~~l~~l~~ 247 (612)
||++...... ...+.....++ ++.+.+++.+.|..++.
T Consensus 72 LF~~~~d~~~e~W~G~~~~~e~a~~~~gvd~v~~~~~l~~~l~~~~~ 118 (134)
T PF05195_consen 72 LFVPPKDPDDEIWDGPRPGPEEAKEIYGVDEVYYIDELEEVLSELLK 118 (134)
T ss_dssp EEE----CCGHHCCSS--HHHHHHHHHT-SEEEEGGGHHHHHHHHHT
T ss_pred EEeCCCCcCccEECccCCCHHHHHHHhCCCEEEEHHHHHHHHHHHHc
Confidence 9997643221 12222223455 78888899999988875
No 56
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=91.08 E-value=2 Score=43.31 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCcccCCCCccc-CCCCCCCCCCCCcccccCC
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVH-EGPQSISFKPRNVPIHASM 513 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~~h~~GHgiG~~l~~h-E~P~~i~~~~~~~~l~~gm 513 (612)
..|++.+.+.+++.++.+.++| |++-.+|...++..+.+.|... ....-|+ ...+ ..|. ..|.+.+|++|.
T Consensus 3 ~lr~A~~i~~~~~~~~~~~i~p-G~tE~ei~~~~~~~~~~~G~~~--~~~~~v~--~g~~~~~~H---~~~~~~~l~~Gd 74 (243)
T cd01087 3 LMRKACDISAEAHRAAMKASRP-GMSEYELEAEFEYEFRSRGARL--AYSYIVA--AGSNAAILH---YVHNDQPLKDGD 74 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHHcCCCc--CCCCeEE--ECCCccccC---CCcCCCcCCCCC
Confidence 4678889999999999999999 9999999999999999988651 1122222 1111 1121 122577899999
Q ss_pred eEeecccceecCcceEEEeeeeEE
Q 007222 514 TATDEPGYYEDGNFGIRLENVLVV 537 (612)
Q Consensus 514 v~~iEPg~y~~g~~gvriEd~v~V 537 (612)
++.++.+....| +-.-+.-|++|
T Consensus 75 ~v~vD~g~~~~G-Y~ad~~Rt~~v 97 (243)
T cd01087 75 LVLIDAGAEYGG-YASDITRTFPV 97 (243)
T ss_pred EEEEEeCceECC-EeeeeeEEEEe
Confidence 999998876554 34556666666
No 57
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=90.92 E-value=1.1 Score=43.70 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH-HHHcCCC-CCCCCCcccCCCCcccCC-CCCCCCCCCCccccc
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLP-LWKYGLD-YRHGTGHGVGSYLNVHEG-PQSISFKPRNVPIHA 511 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~-~~~~G~~-~~h~~GHgiG~~l~~hE~-P~~i~~~~~~~~l~~ 511 (612)
..|++.+.+.+++.++.+.++| |++-.+|...+.+. +.+.|.. ..+..-=+.| .+.. |. ..|++.+|++
T Consensus 2 ~~R~a~~i~~~~~~~~~~~~~~-G~te~ei~~~~~~~~~~~~g~~~~~~~~~~~~g----~~~~~~~---~~~~~~~l~~ 73 (207)
T PF00557_consen 2 CMRKAARIADAAMEAAMEALRP-GMTEYEIAAAIERAMLRRHGGEEPAFPPIVGSG----PNTDLPH---YTPTDRRLQE 73 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST-TCBHHHHHHHHHHHHHHHTTTTEESSESEEEEC----CCCGETT---TBCCSSBEST
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHHcCCCcccCCceEecC----Ccceecc---eeccceeeec
Confidence 4688899999999999999999 99999999999987 6777742 2222111122 1111 22 1225788999
Q ss_pred CCeEeecccceecCcceEEEeeeeEEe
Q 007222 512 SMTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 512 gmv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
|+++.++-+....| +-.-+.-|+++.
T Consensus 74 gd~v~id~~~~~~g-y~~d~~Rt~~~G 99 (207)
T PF00557_consen 74 GDIVIIDFGPRYDG-YHADIARTFVVG 99 (207)
T ss_dssp TEEEEEEEEEEETT-EEEEEEEEEESS
T ss_pred CCcceeeccceeee-eEeeeeeEEEEe
Confidence 99999998766554 345566666553
No 58
>PRK12897 methionine aminopeptidase; Reviewed
Probab=90.51 E-value=2.4 Score=42.99 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCCC----CCCC--cccCCCCcccCCCCCCCCCCCCccc
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYR----HGTG--HGVGSYLNVHEGPQSISFKPRNVPI 509 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~~----h~~G--HgiG~~l~~hE~P~~i~~~~~~~~l 509 (612)
.|++-+.+.+++.++.+.++| |++-.||...+...+.+.|.... .+.. -..| .+- -.| ...|++.+|
T Consensus 13 ~r~A~~i~~~~~~~~~~~~~~-G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g--~n~-~~~---H~~p~~~~l 85 (248)
T PRK12897 13 MHESGKLLASCHREIAKIMKP-GITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICAS--VND-EMC---HAFPADVPL 85 (248)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-CCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEec--cCC-Eee---cCCCCCccc
Confidence 456777778888889999999 99999999999999999886421 0111 1112 110 011 111257789
Q ss_pred ccCCeEeecccceecCcceEEEeeeeEE
Q 007222 510 HASMTATDEPGYYEDGNFGIRLENVLVV 537 (612)
Q Consensus 510 ~~gmv~~iEPg~y~~g~~gvriEd~v~V 537 (612)
++|.++.++-|.-..| +..-+.-|++|
T Consensus 86 ~~Gd~V~iD~g~~~~G-Y~sD~tRT~~v 112 (248)
T PRK12897 86 TEGDIVTIDMVVNLNG-GLSDSAWTYRV 112 (248)
T ss_pred CCCCEEEEEeeEEECC-EEEEEEEEEEc
Confidence 9999999998765443 34556666666
No 59
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=90.28 E-value=1.9 Score=42.00 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCCCCCCCcccccCC
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASM 513 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gm 513 (612)
..|++.+.+.+++.++.+.++| |++-.||...++..+.+.|.. +.+.+--+.| .+ ...|. ..|++.+|++|.
T Consensus 3 ~~r~a~~i~~~~~~~~~~~~~~-G~te~ei~~~~~~~~~~~g~~~~~~~~~v~~g--~~-~~~~h---~~~~~~~l~~gd 75 (208)
T cd01092 3 LLRKAARIADKAFEELLEFIKP-GMTEREVAAELEYFMRKLGAEGPSFDTIVASG--PN-SALPH---GVPSDRKIEEGD 75 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHCcC-CCCHHHHHHHHHHHHHHcCCCCCCCCcEEEEC--cc-ccccC---CCCCCcCcCCCC
Confidence 4678888899999999999999 999999999999999988863 3333222223 11 01121 112567899999
Q ss_pred eEeecccceecCcceEEEeeeeEEee
Q 007222 514 TATDEPGYYEDGNFGIRLENVLVVTD 539 (612)
Q Consensus 514 v~~iEPg~y~~g~~gvriEd~v~Vt~ 539 (612)
++.++.|....| +-.-+..|++|.+
T Consensus 76 ~v~id~g~~~~g-y~~d~~RT~~~g~ 100 (208)
T cd01092 76 LVLIDFGAIYDG-YCSDITRTVAVGE 100 (208)
T ss_pred EEEEEeeeeECC-EeccceeEEECCC
Confidence 999998865443 3455667777763
No 60
>PRK08671 methionine aminopeptidase; Provisional
Probab=90.06 E-value=2.8 Score=43.73 Aligned_cols=95 Identities=9% Similarity=0.001 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC--CCCCCCcccCCCCcccCCCCCCCCCCCCcccccC
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHAS 512 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~--~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~g 512 (612)
..+++-+.+.+++..+.+.++| |++-.||...+.+.+.+.|.. |+..+ ++|.. ..|-.|. .. ++.+|++|
T Consensus 4 ~~r~A~~I~~~~~~~~~~~i~p-G~se~ei~~~~~~~i~~~g~~~afp~~v--s~n~~-~~H~~p~---~~-d~~~l~~G 75 (291)
T PRK08671 4 KYLEAGKIASKVREEAAKLIKP-GAKLLDVAEFVENRIRELGAKPAFPCNI--SINEV-AAHYTPS---PG-DERVFPEG 75 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHHcCCccCCCCEE--eeCCC-ccCCCCC---CC-CCcccCCC
Confidence 4678888889999999999999 999999999999999998753 22111 12211 1233332 12 46789999
Q ss_pred CeEeecccceecCcceEEEeeeeEEe
Q 007222 513 MTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 513 mv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
.++.++.|....|. -.-+..|+++.
T Consensus 76 DvV~iD~G~~~dGY-~aD~arT~~vG 100 (291)
T PRK08671 76 DVVKLDLGAHVDGY-IADTAVTVDLG 100 (291)
T ss_pred CEEEEEEeEEECCE-EEEEEEEEEeC
Confidence 99999998877653 44455566553
No 61
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=89.82 E-value=2.9 Score=43.70 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC--CCCCCCcccCCCCcccCCCCCCCCCCCCcccccC
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHAS 512 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~--~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~g 512 (612)
..+++-+.+.+++..+.+.++| |++-.||...+...+.+.|-. |+..+ +++. ...|-.|. .. ++.+|++|
T Consensus 7 ~~r~A~~I~~~~~~~~~~~i~~-G~se~el~~~~e~~~~~~g~~~aFp~~v--s~n~-~~~H~~p~---~~-d~~~l~~G 78 (295)
T TIGR00501 7 KWIEAGKIHSKVRREAADRIVP-GVKLLEVAEFVENRIRELGAEPAFPCNI--SINE-CAAHFTPK---AG-DKTVFKDG 78 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHCcC-CCCHHHHHHHHHHHHHHcCCCCCCCcce--ecCC-EeeCCCCC---CC-cCccCCCC
Confidence 4567778888888999999999 999999999999999998764 22211 1121 11233332 12 46789999
Q ss_pred CeEeecccceecCcceEEEeeeeEEe
Q 007222 513 MTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 513 mv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
.++.++.|...+| +-.-+.-|++|.
T Consensus 79 DvV~iD~G~~~dG-Y~aD~arT~~vG 103 (295)
T TIGR00501 79 DVVKLDLGAHVDG-YIADTAITVDLG 103 (295)
T ss_pred CEEEEEEeEEECC-EEEEEEEEEEeC
Confidence 9999999988776 345555666653
No 62
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=89.03 E-value=2.6 Score=40.50 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCe
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMT 514 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv 514 (612)
..+++-..+.+++.++...++| |++-.|+....++.+.+.|..+.+.+-=+.| +........+++.++++|.+
T Consensus 3 ~~r~a~~i~~~~~~~~~~~~~~-G~te~ei~~~~~~~~~~~g~~~~~~~~v~~g------~~~~~~h~~~~~~~i~~gd~ 75 (207)
T cd01066 3 RLRKAAEIAEAAMAAAAEAIRP-GVTEAEVAAAIEQALRAAGGYPAGPTIVGSG------ARTALPHYRPDDRRLQEGDL 75 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHCcC-CCCHHHHHHHHHHHHHHcCCCCCCCcEEEEC------ccccCcCCCCCCCCcCCCCE
Confidence 4678888999999999999999 9999999999999999988632222222222 10011112225679999999
Q ss_pred EeecccceecCcceEEEeeeeEEe
Q 007222 515 ATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 515 ~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
+.++.+....| +-.-+..++++.
T Consensus 76 v~~d~g~~~~g-y~~d~~rt~~~g 98 (207)
T cd01066 76 VLVDLGGVYDG-YHADLTRTFVIG 98 (207)
T ss_pred EEEEeceeECC-CccceeceeEcC
Confidence 99998876554 344455666654
No 63
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=88.40 E-value=3.5 Score=41.65 Aligned_cols=95 Identities=18% Similarity=0.109 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCC-CC----cccCCCCcccCCCCCCCCCCCCccc
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHG-TG----HGVGSYLNVHEGPQSISFKPRNVPI 509 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~-~G----HgiG~~l~~hE~P~~i~~~~~~~~l 509 (612)
.|++.+.+.+++.++.+.++| |++-.||...++..+.+.|.. ..++ .+ .+.| .+ ...| ...|++.+|
T Consensus 12 ~r~A~~i~~~~~~~~~~~i~~-G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~n-~~~~---H~~~~~~~l 84 (247)
T TIGR00500 12 IRKAGRLAAEVLEELEREVKP-GVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCIS--VN-EVVI---HGIPDKKVL 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEec--cc-cEEE---ecCCCCccc
Confidence 456777777888888889999 999999999999999998853 1111 11 1122 11 0111 111267899
Q ss_pred ccCCeEeecccceecCcceEEEeeeeEEe
Q 007222 510 HASMTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 510 ~~gmv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
++|.++.++-|....| +-.-+..|++|.
T Consensus 85 ~~Gd~v~iD~g~~~~g-Y~aD~~RT~~vG 112 (247)
T TIGR00500 85 KDGDIVNIDVGVIYDG-YHGDTAKTFLVG 112 (247)
T ss_pred CCCCEEEEEEEEEECC-EEEEEEEEEEcC
Confidence 9999999998765443 445566666664
No 64
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=87.50 E-value=4.3 Score=40.70 Aligned_cols=96 Identities=13% Similarity=0.008 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCC---CCCCCCCc----ccCCCCcccCCCCCCCCCCCCc
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL---DYRHGTGH----GVGSYLNVHEGPQSISFKPRNV 507 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~---~~~h~~GH----giG~~l~~hE~P~~i~~~~~~~ 507 (612)
..|++-+.+.+++.++.+.++| |++-.||...+...+.+.|- .+.+..+. ..| .+ ...|. ..+++.
T Consensus 3 ~ir~Aa~i~d~~~~~~~~~i~p-G~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G--~~-~~~~H---~~~~~r 75 (228)
T cd01090 3 LIRHGARIADIGGAAVVEAIRE-GVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSG--IN-TDGAH---NPVTNR 75 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEee--cc-ccccC---CCCCCc
Confidence 4678889999999999999999 99999999998888888763 22211110 122 11 11121 112678
Q ss_pred ccccCCeEeecccceecCcceEEEeeeeEEe
Q 007222 508 PIHASMTATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 508 ~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
+|++|.++.++.+....| +-.-++-|++|.
T Consensus 76 ~l~~GD~v~~d~g~~~~G-Y~ad~~RT~~vG 105 (228)
T cd01090 76 KVQRGDILSLNCFPMIAG-YYTALERTLFLD 105 (228)
T ss_pred ccCCCCEEEEEEeEEECC-EeeeeEEEEECC
Confidence 999999999998765554 344556666653
No 65
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=87.10 E-value=5.4 Score=39.88 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCC--CCCcccCC--CCc-----ccCCCCCCCCCC
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRH--GTGHGVGS--YLN-----VHEGPQSISFKP 504 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h--~~GHgiG~--~l~-----~hE~P~~i~~~~ 504 (612)
..|++-+.+.+++.++.+.++| |++-.|+...+.+.+.+..-. +.. ....|+++ .+. .|-.|. .. .
T Consensus 3 ~~r~A~~I~~~~~~~~~~~i~p-G~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~v~~n~~~~H~~p~-~~-~- 78 (228)
T cd01089 3 KYKTAGQIANKVLKQVISLCVP-GAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISVNNCVCHFSPL-KS-D- 78 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeEeccCceeecCCCC-CC-C-
Confidence 5688889999999999999999 999999988777777763221 111 11122220 011 122221 00 1
Q ss_pred CCcccccCCeEeecccceecCcceEEEeeeeEEee
Q 007222 505 RNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 539 (612)
Q Consensus 505 ~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~ 539 (612)
++.+|++|.++.++.|....|. -.-+..|++|.+
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY-~sD~tRT~~vG~ 112 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGY-IAVVAHTIVVGA 112 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCE-EEEEEEEEEeCC
Confidence 5778999999999999877663 566778888764
No 66
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=86.15 E-value=1.3 Score=42.10 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHhcC------CCEEEecCcc---c---------cceeeecccCCCCCCceeeEEEEEeCCceEEEE
Q 007222 151 SSVVEKLKELREKLTNEK------ARGIIITTLD---E---------VAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYV 212 (612)
Q Consensus 151 ~~~~~Rl~rlr~~m~~~g------ld~lll~~~~---n---------i~yltg~~~~~~~~~p~~~a~liv~~~~~~L~~ 212 (612)
+.|.+|++++.+.+++.. +|++++..+. + ..||+||.-.+ +.++++.++.++++
T Consensus 4 ~~F~~RL~~L~~~W~~~~~~~~~~~dal~i~~G~~~e~~~Y~Ks~aLq~WLlGYEfpd--------Tiiv~tk~~i~~lt 75 (163)
T PF14826_consen 4 ETFHKRLKRLYSSWKEHKDDLWGGADALVIAVGKADEDNPYSKSTALQTWLLGYEFPD--------TIIVFTKKKIHFLT 75 (163)
T ss_dssp HHHHHHHHHHHHHHHCCCHHTSTT-SEEEEEE-S--TTSTT-HHHHHHHHHHSS--SS--------EEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCccccCCCCEEEEEeCCcccCccchhHHHHHHHHhcccHhh--------hhhhhcCCEEEEEe
Confidence 568999999999999985 8998886653 2 67999986432 67888999999888
Q ss_pred eCCC
Q 007222 213 DKRK 216 (612)
Q Consensus 213 ~~~~ 216 (612)
...+
T Consensus 76 S~KK 79 (163)
T PF14826_consen 76 SKKK 79 (163)
T ss_dssp EHHH
T ss_pred CHHH
Confidence 7643
No 67
>PRK07281 methionine aminopeptidase; Reviewed
Probab=85.99 E-value=5 Score=41.77 Aligned_cols=82 Identities=13% Similarity=0.018 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCCC-CC-CCcccCC--C--Cccc-CCCCCCCCCCCCcc
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYR-HG-TGHGVGS--Y--LNVH-EGPQSISFKPRNVP 508 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~~-h~-~GHgiG~--~--l~~h-E~P~~i~~~~~~~~ 508 (612)
.|++-+.+.+++.++.+.++| |++-.||...++..+++.|.... ++ .|++.++ . ...+ .-|. ..|++..
T Consensus 13 mr~A~~i~~~~~~~~~~~i~p-G~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~H---~~p~~~~ 88 (286)
T PRK07281 13 MDRAGDFLASIHIGLRDLIKP-GVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVAH---AFPRHYI 88 (286)
T ss_pred HHHHHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEeccccccC---CCCCCcC
Confidence 456777778888888899999 99999999999999998875321 11 1111110 0 1111 1121 2226789
Q ss_pred cccCCeEeecccc
Q 007222 509 IHASMTATDEPGY 521 (612)
Q Consensus 509 l~~gmv~~iEPg~ 521 (612)
|++|.++.++-|.
T Consensus 89 l~~Gd~v~iD~g~ 101 (286)
T PRK07281 89 LKEGDLLKVDMVL 101 (286)
T ss_pred cCCCCEEEEEecc
Confidence 9999999998764
No 68
>PRK12318 methionine aminopeptidase; Provisional
Probab=85.38 E-value=7.5 Score=40.54 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCC-CCCCC-----cccCCCCcccCCCCCCCCCCCCccc
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDY-RHGTG-----HGVGSYLNVHEGPQSISFKPRNVPI 509 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~-~h~~G-----HgiG~~l~~hE~P~~i~~~~~~~~l 509 (612)
.|++-..+.+++.++.+.++| |++-.||..+++..+.+.|..- ....| ..+. ....+. . ....|++.+|
T Consensus 52 ~R~Aa~I~~~a~~a~~~~irp-G~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~--~g~n~~-~-~H~~p~~~~l 126 (291)
T PRK12318 52 IRKACQVTARILDALCEAAKE-GVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTIC--TSLNEV-I-CHGIPNDIPL 126 (291)
T ss_pred HHHHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceE--eeccce-e-ecCCCCCCcc
Confidence 456777778888899999999 9999999998888888777421 11111 1111 111110 0 1111257899
Q ss_pred ccCCeEeecccceecCcceEEEeeeeEE
Q 007222 510 HASMTATDEPGYYEDGNFGIRLENVLVV 537 (612)
Q Consensus 510 ~~gmv~~iEPg~y~~g~~gvriEd~v~V 537 (612)
++|.++.++.+....| +..-+.-|++|
T Consensus 127 ~~GD~V~vD~g~~~~G-Y~aDitRT~~v 153 (291)
T PRK12318 127 KNGDIMNIDVSCIVDG-YYGDCSRMVMI 153 (291)
T ss_pred CCCCEEEEEEeEEECc-EEEEEEEEEEC
Confidence 9999999998865544 45566666666
No 69
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=84.57 E-value=8 Score=42.99 Aligned_cols=92 Identities=14% Similarity=0.044 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH----HcCCC--CCCCCCcccCCCCc---ccCCCCCCCCCCCC
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLW----KYGLD--YRHGTGHGVGSYLN---VHEGPQSISFKPRN 506 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~----~~G~~--~~h~~GHgiG~~l~---~hE~P~~i~~~~~~ 506 (612)
.+++-+.+.+++..+.+.++| |++..||...+...+. +.|.. ....+ +++ ++ .|-.|. .+ ++
T Consensus 161 ~R~AaeIa~~vl~~~~~~Ikp-G~se~EIa~~ie~~ir~~~~~~G~~~g~aFPt--~vS--~N~~aaH~tP~---~g-d~ 231 (470)
T PTZ00053 161 LRRAAEVHRQVRRYAQSVIKP-GVKLIDICERIESKSRELIEADGLKCGWAFPT--GCS--LNHCAAHYTPN---TG-DK 231 (470)
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHhcCCcccCCCCc--eee--cCccccCCCCC---CC-CC
Confidence 345555666677778888999 9999998886665444 33431 11111 233 22 243342 12 46
Q ss_pred cccccCCeEeecccceecCcceEEEeeeeEE
Q 007222 507 VPIHASMTATDEPGYYEDGNFGIRLENVLVV 537 (612)
Q Consensus 507 ~~l~~gmv~~iEPg~y~~g~~gvriEd~v~V 537 (612)
.+|+.|.++.|.-|....|. -.-+.-|++|
T Consensus 232 ~vLk~GDvVkID~G~~vdGY-iaD~ArTv~v 261 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHVNGR-IIDCAFTVAF 261 (470)
T ss_pred cEecCCCeEEEEEeEEECCE-EEeEEEEEEe
Confidence 78999999999999887764 3444555555
No 70
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=74.69 E-value=7.4 Score=42.51 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=41.3
Q ss_pred cEEEEcCCChhhhhhhcCCCCCCCCceeecccccCCCHHHHHHHHHHHHHhcCCCEEEecCc
Q 007222 116 QKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTL 177 (612)
Q Consensus 116 ~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~~~~~Rl~rlr~~m~~~gld~lll~~~ 177 (612)
++|++. ++++.++++.+|.. + .-+.|..++- .=+++.++.|+++++|.++....
T Consensus 299 l~L~~~-pdIl~~l~~~~~~~---~---~~VGFaaEt~-~~~~~A~~kl~~k~~D~ivaN~i 352 (399)
T PRK05579 299 LELVPN-PDILAEVAALKDKR---P---FVVGFAAETG-DVLEYARAKLKRKGLDLIVANDV 352 (399)
T ss_pred EEEEeC-cHHHHHHHhccCCC---C---EEEEEccCCc-hHHHHHHHHHHHcCCeEEEEecC
Confidence 689998 99999999765532 1 2356666653 33899999999999999998775
No 71
>PRK10879 proline aminopeptidase P II; Provisional
Probab=72.14 E-value=27 Score=38.64 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCCC---CCCCCcccCCCCcccCCCCCCCCCCCCcccccC
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDY---RHGTGHGVGSYLNVHEGPQSISFKPRNVPIHAS 512 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~~---~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~g 512 (612)
.|++.+.+.+++.++++.++| |++-.+|...+...+.+.|... ..-++-|.-. ...| ..+++.+|++|
T Consensus 182 ~r~A~~i~~~a~~~~~~~~~p-G~tE~ei~a~~~~~~~~~G~~~~~~~~iv~~G~na-~~~H-------~~~~~~~l~~G 252 (438)
T PRK10879 182 LRRAGEISALAHTRAMEKCRP-GMFEYQLEGEIHHEFNRHGARYPSYNTIVGSGENG-CILH-------YTENESEMRDG 252 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHCCCCCCCCCcEEEEcCcc-cccc-------CCCCccccCCC
Confidence 356666777888889999999 9999999998888888888642 2112211110 0112 11256789999
Q ss_pred CeEeecccceecCcceEEEeeeeEE
Q 007222 513 MTATDEPGYYEDGNFGIRLENVLVV 537 (612)
Q Consensus 513 mv~~iEPg~y~~g~~gvriEd~v~V 537 (612)
.++.+..|....| +..-+.-|+.|
T Consensus 253 DlVliD~G~~~~G-Y~sDitRT~~v 276 (438)
T PRK10879 253 DLVLIDAGCEYKG-YAGDITRTFPV 276 (438)
T ss_pred CEEEEEeCeEECC-EEEEeEEEEEE
Confidence 9999998876654 45667777766
No 72
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=71.49 E-value=20 Score=35.74 Aligned_cols=96 Identities=13% Similarity=-0.037 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC--CchhHHHHHHHHHHHHcC-C---CCCCCCCcccCCCCcccCCCCCCCCCCCCcc
Q 007222 435 HEKACYTAVLKGHIALGNAVFPNG--TCGHTLDILARLPLWKYG-L---DYRHGTGHGVGSYLNVHEGPQSISFKPRNVP 508 (612)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~P~G--~~~~~v~~~~~~~~~~~G-~---~~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~ 508 (612)
.+.+.-..+.+++..+.+.++| | ++-.||.+.+.+.+...| + .|...+.=|.-. ..+|-.|. +. ++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~-G~~~tE~eiaa~~~~~~~~~g~~~~~~f~~~v~~g~n~-~~~H~~p~---~~-~~r~ 78 (224)
T cd01085 5 AHIRDGVALVEFLAWLEQEVPK-GETITELSAADKLEEFRRQQKGYVGLSFDTISGFGPNG-AIVHYSPT---EE-SNRK 78 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCCEeHHHHHHHHHHHHHHcCCCcCCCcceEEEecCcc-CcCCCCcC---cc-cCcc
Confidence 3444555556888888999999 9 899999999988777654 2 121111111110 11222221 01 2789
Q ss_pred cccCCeEeecccceecCcceEEEeeeeEE
Q 007222 509 IHASMTATDEPGYYEDGNFGIRLENVLVV 537 (612)
Q Consensus 509 l~~gmv~~iEPg~y~~g~~gvriEd~v~V 537 (612)
|++|.++.++.+....|. -.-+.-|++|
T Consensus 79 l~~GD~V~iD~g~~~~gY-~aD~~RT~~v 106 (224)
T cd01085 79 ISPDGLYLIDSGGQYLDG-TTDITRTVHL 106 (224)
T ss_pred cCCCCEEEEEeCccCCCc-ccccEEeecC
Confidence 999999999988765543 3445555555
No 73
>PRK15173 peptidase; Provisional
Probab=66.10 E-value=45 Score=35.26 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHcCCC-CCCCCCcccCCCCcccCCCCCCCCCCCCcccccCCe
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMT 514 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~~~G~~-~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~~gmv 514 (612)
.|++-..+.+++.++.+.++| |++-.||.......+.+.|.. +.-..--..|. .-.|..+ +++..+++|.+
T Consensus 104 mr~A~~i~~~~~~~~~~~i~~-G~tE~el~a~~~~~~~~~g~~~~~~~~~i~~G~----~~~~h~~---~~~~~l~~Gd~ 175 (323)
T PRK15173 104 LRKSAEITEYGITEASKLIRV-GCTSAELTAAYKAAVMSKSETHFSRFHLISVGA----DFSPKLI---PSNTKACSGDL 175 (323)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHcCCCCCCCCcEEEECC----CCccCCC---CCCCccCCCCE
Confidence 456667777788888889999 999999998887776665531 11000011121 1112111 15678999999
Q ss_pred EeecccceecCcceEEEeeeeEEe
Q 007222 515 ATDEPGYYEDGNFGIRLENVLVVT 538 (612)
Q Consensus 515 ~~iEPg~y~~g~~gvriEd~v~Vt 538 (612)
+.++.|....| +..-+.-|+.|.
T Consensus 176 V~iD~g~~~~G-Y~aDitRT~~vG 198 (323)
T PRK15173 176 IKFDCGVDVDG-YGADIARTFVVG 198 (323)
T ss_pred EEEEeCccCCC-EeeeeEEEEEcC
Confidence 99988764333 456667777763
No 74
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=60.61 E-value=19 Score=39.25 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=41.6
Q ss_pred cEEEEcCCChhhhhhhcCCCCCCCCceeecccccCCCHHHHHHHHHHHHHhcCCCEEEecCcccc
Q 007222 116 QKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTLDEV 180 (612)
Q Consensus 116 ~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~~~~~Rl~rlr~~m~~~gld~lll~~~~ni 180 (612)
++|++. ++++.++++.+|. ..-..|..++=.+=+++.++.|+++++|+++.....+-
T Consensus 297 l~L~~~-pdil~~l~~~~~~-------~~lvgF~aEt~~~l~~~A~~kl~~k~~D~ivaN~i~~~ 353 (390)
T TIGR00521 297 LKLVKN-PDIIAEVRKIKKH-------QVIVGFKAETNDDLIKYAKEKLKKKNLDMIVANDVSQR 353 (390)
T ss_pred EEEEeC-cHHHHHHHhhCCC-------cEEEEEEcCCCcHHHHHHHHHHHHcCCCEEEEccCCcc
Confidence 678998 9999999976552 12345655542215789999999999999998876443
No 75
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=58.64 E-value=49 Score=34.37 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchhHHHH----HHHHHHHHcCCC--CCCCCCcccCCCCcccCCCCCCCCCCCCcccc
Q 007222 437 KACYTAVLKGHIALGNAVFPNGTCGHTLDI----LARLPLWKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIH 510 (612)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~----~~~~~~~~~G~~--~~h~~GHgiG~~l~~hE~P~~i~~~~~~~~l~ 510 (612)
+++.++-+.+...+..-++| |++.-+|-. ..|+.+.+.|+. ....+|-++-++ ..|=.|. .+ +.++|+
T Consensus 89 rraAE~HRqvR~yv~s~ikP-Gmtm~ei~e~iEnttR~li~e~gl~aGi~FPtG~SlN~c-AAHyTpN---aG-d~tVLq 162 (397)
T KOG2775|consen 89 RRAAEAHRQVRKYVQSIIKP-GMTMIEICETIENTTRKLILENGLNAGIGFPTGCSLNHC-AAHYTPN---AG-DKTVLK 162 (397)
T ss_pred HHHHHHHHHHHHHHHHhccC-cccHHHHHHHHHHHHHHHHHhccccccccCCCcccccch-hhhcCCC---CC-Cceeee
Confidence 44555555566677778999 999887755 455566666663 333344444332 2355554 34 678999
Q ss_pred cCCeEeecccceecC
Q 007222 511 ASMTATDEPGYYEDG 525 (612)
Q Consensus 511 ~gmv~~iEPg~y~~g 525 (612)
...|.-|.-|....|
T Consensus 163 ydDV~KiDfGthi~G 177 (397)
T KOG2775|consen 163 YDDVMKIDFGTHIDG 177 (397)
T ss_pred ecceEEEeccccccC
Confidence 999998887776654
No 76
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=56.12 E-value=23 Score=35.47 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=43.3
Q ss_pred cEEEEcCCChhhhhhhcCCCCCCCCceeecccccCC---CHHHHHHHHHHHHHhcCCCEEEecCccc
Q 007222 116 QKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGS---SVVEKLKELREKLTNEKARGIIITTLDE 179 (612)
Q Consensus 116 ~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~---~~~~Rl~rlr~~m~~~gld~lll~~~~n 179 (612)
++|+|. ++++..+++.+|. ..-+.|..+ +.++-+++.++.|.++++|.++......
T Consensus 132 l~l~~~-p~il~~~~~~~~~-------~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~ivaN~~~~ 190 (227)
T TIGR02114 132 LFLKKT-PKVISLVKEWNPQ-------IHLVGFKLLVNVTQEELVKVARASLIKNQADFILANDLTD 190 (227)
T ss_pred EEEEEC-hHHHHHHHhhCCC-------cEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEcchhh
Confidence 578998 9999999865432 123456665 5678899999999999999999888655
No 77
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=53.52 E-value=1.1e+02 Score=30.99 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCC-CCCCCCeEE--EecCCCcccccCCCCCCCCcCCCCCeEEEeecce-eC-------
Q 007222 349 GTVKLTEVTVSDKLESFRASKEHF-RGLSFPTIS--SVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQ-YQ------- 417 (612)
Q Consensus 349 ~~~g~tE~ev~~~l~~~~~~~~g~-~~~~f~~iv--~~G~~~~~~h~~p~~~~~~~l~~gd~v~iD~g~~-~~------- 417 (612)
++||++-.++.+.+.+... +.+. ....|..-+ +.|-...-+........+++|++|.++.+..|.. ..
T Consensus 139 lkpG~~~~dv~~~a~~~i~-~~~~~~~~~~~~~~GHgiGle~hE~~~~l~~~~~~~L~~GMvf~vepGi~~~~~~~~~~~ 217 (243)
T cd01091 139 LKPGAKLSDVYQKTLDYIK-KKKPELEPNFTKNLGFGIGLEFRESSLIINAKNDRKLKKGMVFNLSIGFSNLQNPEPKDK 217 (243)
T ss_pred cCCCCcHHHHHHHHHHHHH-HhChhHHHhCcCCcccccCcccccCccccCCCCCCCcCCCCEEEEeCCcccccCccccCc
Confidence 5899999999988877533 2321 111121111 1121110000001112247899999999999975 22
Q ss_pred ---CcccceEeeeecCC
Q 007222 418 ---DGTTDITRTFHFGK 431 (612)
Q Consensus 418 ---gy~~d~tRT~~~G~ 431 (612)
.|.-=++-|++|.+
T Consensus 218 ~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 218 ESKTYALLLSDTILVTE 234 (243)
T ss_pred cCCeeEEEEEEEEEEcC
Confidence 45666888888854
No 78
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=47.59 E-value=38 Score=33.93 Aligned_cols=56 Identities=25% Similarity=0.250 Sum_probs=42.8
Q ss_pred cEEEEcCCChhhhhhhcCCCCCCCCceeecccccCC---CHHHHHHHHHHHHHhcCCCEEEecCccc
Q 007222 116 QKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGS---SVVEKLKELREKLTNEKARGIIITTLDE 179 (612)
Q Consensus 116 ~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~---~~~~Rl~rlr~~m~~~gld~lll~~~~n 179 (612)
++|+++ ++++..+++.+|.. .-+.|..+ +.++-+++.++.|+++++|.++......
T Consensus 133 l~l~~~-p~il~~~~~~~~~~-------~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN~~~~ 191 (229)
T PRK06732 133 LFLKKT-PKVISYVKKWNPNI-------TLVGFKLLVNVSKEELIKVARASLIKNQADYILANDLTD 191 (229)
T ss_pred EEEEEC-hHHHHHHHhhCCCc-------EEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 578898 99999998655431 12456554 4678899999999999999999888654
No 79
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=36.48 E-value=1.3e+02 Score=32.09 Aligned_cols=95 Identities=19% Similarity=0.145 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH--------H-----cCCCCCCC--CCcccCCCCcccCCCCCC
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLW--------K-----YGLDYRHG--TGHGVGSYLNVHEGPQSI 500 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~~~~~~--------~-----~G~~~~h~--~GHgiG~~l~~hE~P~~i 500 (612)
.|.+-+.+.+++...++.+.| |++..+|-......+- + .|.-|+.. .---+| |=.|. .
T Consensus 24 Yk~AgeI~n~~lk~V~~~~~~-gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Isvnncv~-----h~sPl-k 96 (398)
T KOG2776|consen 24 YKMAGEIVNKVLKSVVELCQP-GASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSISVNNCVC-----HFSPL-K 96 (398)
T ss_pred hhhHHHHHHHHHHHHHHHhcC-CchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceecccceee-----ccCcC-C
Confidence 345556777888888999999 9999998554443332 2 12222211 111222 33443 2
Q ss_pred CCCCCCcccccCCeEeecccceecCcceEEEeeeeEEeeC
Q 007222 501 SFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDA 540 (612)
Q Consensus 501 ~~~~~~~~l~~gmv~~iEPg~y~~g~~gvriEd~v~Vt~~ 540 (612)
+ . .+..|++|.|+-|.-|..++| |-.-+..|+||++.
T Consensus 97 s-d-~~~~Lk~GDvVKIdLG~HiDG-fiA~vaHT~VV~~~ 133 (398)
T KOG2776|consen 97 S-D-ADYTLKEGDVVKIDLGVHIDG-FIALVAHTIVVGPA 133 (398)
T ss_pred C-C-CcccccCCCEEEEEeeeeecc-ceeeeeeeEEeccC
Confidence 2 1 478999999999999999987 46678999999986
No 80
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=33.77 E-value=53 Score=26.09 Aligned_cols=58 Identities=16% Similarity=0.346 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHhhcCCcEEEEcCCChhhhhhhcCCCCCCCCceeecccccCCCHHHHHHHHHHHHHhcCCC
Q 007222 99 VSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKAR 170 (612)
Q Consensus 99 is~~~y~~L~~~l~~~~~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~~~~~Rl~rlr~~m~~~gld 170 (612)
+|-.+++-|.--+.. .-+.++. +.+++.+|.+.+ ..+.......|.+||+.|++.+.+
T Consensus 6 Lt~~e~~lL~~L~~~-~~~~vs~-~~l~~~~w~~~~------------~~~~~~l~~~I~rLR~kL~~~~~~ 63 (77)
T PF00486_consen 6 LTPKEFRLLELLLRN-PGRVVSR-EELIEALWGDEE------------DVSDNSLDVHISRLRKKLEDAGGD 63 (77)
T ss_dssp SSHHHHHHHHHHHHT-TTSEEEH-HHHHHHHTSSSS------------TTCTHHHHHHHHHHHHHHHSSTTS
T ss_pred cCHHHHHHHHHHHhC-CCCCCCH-HHhCChhhhccc------------ccchhhHHHHHHHHHHHHhhcCCC
Confidence 566777777654433 2367887 899999996542 234567889999999999997644
No 81
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=29.15 E-value=1.9e+02 Score=30.46 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=61.8
Q ss_pred EEEEcCCcccHHHHHHHHHHhhcCC-cEEEEcCCChhhhhhhcCCCCCCCCceeecccccCCCHHHHHHHHHHHHHhcC-
Q 007222 91 AIGVDPWCVSIDTAQRWERAFAKKQ-QKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEK- 168 (612)
Q Consensus 91 ~vgfE~~~is~~~y~~L~~~l~~~~-~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~~~~~Rl~rlr~~m~~~g- 168 (612)
.+|||+....+.+|+.+++.+.... +...|+ .|+.|.. ...+.-+|.+-+=|-..+=-.-|+.+++.|+..|
T Consensus 141 ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl---gvE~Lp~---~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGe 214 (315)
T PF08003_consen 141 VIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL---GVEDLPN---LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGE 214 (315)
T ss_pred EEEECCChHHHHHHHHHHHHhCCCccEEEcCc---chhhccc---cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCE
Confidence 6999999999999999998874221 223333 4677653 3457888888888899999999999999999866
Q ss_pred --CCEEEecCccc
Q 007222 169 --ARGIIITTLDE 179 (612)
Q Consensus 169 --ld~lll~~~~n 179 (612)
++-+++-+.++
T Consensus 215 LvLETlvi~g~~~ 227 (315)
T PF08003_consen 215 LVLETLVIDGDEN 227 (315)
T ss_pred EEEEEeeecCCCc
Confidence 55555555444
No 82
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=27.85 E-value=24 Score=32.25 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=19.6
Q ss_pred CcccCCccccceeeeCcccCceeEEE-eC--CCcEEEec
Q 007222 17 SEYVSARDKRREFVSGFTGSAGLALI-TM--NEALLWTD 52 (612)
Q Consensus 17 ~e~l~~~~~n~~YlTGFtGs~g~lli-t~--~~a~l~TD 52 (612)
..|..-++.|-+|||||.-.++++++ .. ++.+||+.
T Consensus 37 ~~y~FrQ~s~F~YLTG~~ep~~~lvl~~~~~~~~~LF~~ 75 (134)
T PF05195_consen 37 IEYPFRQDSNFYYLTGFNEPDAVLVLKDGESGKSTLFVP 75 (134)
T ss_dssp EEE-----HHHHHHH---STT-EEEEEECTTEEEEEEE-
T ss_pred CccccccCCcEEEEeCCCCCCEEEEEecCCCCeEEEEeC
Confidence 35666778899999999999999988 33 26677763
No 83
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=27.79 E-value=68 Score=31.13 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=40.2
Q ss_pred cEEEEcCCChhhhhhhc-CCCCCCCCceeecccccCCCHHHHHHHHHHHHHhcCCCEEEecCcccc
Q 007222 116 QKLVQTSTNLVDKVWKN-RPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTLDEV 180 (612)
Q Consensus 116 ~~lv~~~~~lv~~lr~~-rp~~~~~~~~~~~~~f~~~~~~~Rl~rlr~~m~~~gld~lll~~~~ni 180 (612)
++|.+. ++++..+++. +|.. .-..|..++ ++-+++.++.|+++++|+++.......
T Consensus 115 l~L~~~-pkIL~~l~~~~~~~~-------~lVGFkaEt-~~l~~~A~~kl~~k~~D~IVaN~~~~~ 171 (185)
T PF04127_consen 115 LELKPT-PKILAELRKNKKPNQ-------FLVGFKAET-EELIENAKEKLERKGADLIVANDLSQR 171 (185)
T ss_dssp EEEEE--GGHGCCHHHHCSTTT-------EEEEEEEES-CHHHHHHHHHHHHCT-SEEEEEEGCCC
T ss_pred EEEEeC-hHHHHHHHhcccCCc-------EEEEEEecC-CcHHHHHHHHhHhhCCCEEEEeCCCcC
Confidence 678998 9999999643 3322 134555555 488899999999999999998876654
No 84
>PRK11835 hypothetical protein; Provisional
Probab=26.98 E-value=28 Score=30.52 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.2
Q ss_pred CccccceeeeCcccCc
Q 007222 22 ARDKRREFVSGFTGSA 37 (612)
Q Consensus 22 ~~~~n~~YlTGFtGs~ 37 (612)
-=|++-||++||+|+.
T Consensus 11 RLPQsYRW~sG~~G~k 26 (114)
T PRK11835 11 RLPQSYRWSAGFAGSK 26 (114)
T ss_pred ecCcceeeccCccCce
Confidence 4477899999999874
No 85
>TIGR03241 arg_catab_astB succinylarginine dihydrolase. Members of this family are succinylarginine dihydrolase (EC 3.5.3.23), the second of five enzymes in the arginine succinyltransferase (AST) pathway.
Probab=26.94 E-value=3.5e+02 Score=29.51 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=84.3
Q ss_pred CCCceeecccccCCCHHHHHHHHHHHHHhcCCCEEEecCccc--------cceeeecccCCCCCCceeeEEEEEeCCceE
Q 007222 138 TYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTLDE--------VAWLYNIRGTDVPYCPVVHAFAIVTTNAAF 209 (612)
Q Consensus 138 ~~~~~~~~~~f~~~~~~~Rl~rlr~~m~~~gld~lll~~~~n--------i~yltg~~~~~~~~~p~~~a~liv~~~~~~ 209 (612)
.+.+|.|..+| ..-.+-++++|++|...+.+..+|.-|.. -.||+|-. .+-.+.++..
T Consensus 256 ~~vLf~He~AF--~d~~~~~~~ir~k~~~~~~~~~~ieVp~~~vsv~DAV~sYLFNSQ------------Llt~pdg~M~ 321 (443)
T TIGR03241 256 RNVLFHHQQAF--LNQSQVLDELRAKLAGLGQQFVAIEVPDAEVSVADAVSSYLFNSQ------------LLSREDGKMM 321 (443)
T ss_pred cceeeEhHhhh--cCHHHHHHHHHHHhhccCCCeEEEEeccccCcHHHHHHHhhhcce------------eeecCCCcEE
Confidence 34556666666 45567789999999876666655544433 34666531 2333456777
Q ss_pred EEEeCCCCCHHHHHHhhcCCeEEEeCCchHHHHHHHHhccCCCCCCCCCCCEEEEcCCCCcHHHHHhcccCceeecCCcc
Q 007222 210 LYVDKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLNSDKVLLQQSPL 289 (612)
Q Consensus 210 L~~~~~~~~~~~~~~l~~~~v~v~~y~~~~~~l~~l~~~~l~~~~~~~~~~~ig~d~~~~~~~~~~~L~~~~~~d~~~~v 289 (612)
|+++.+.-+ -..++.++..++... ..-++|-+- .+.+.... ...+..
T Consensus 322 Lv~P~Ecr~----------------n~~v~~yl~~l~~~~-------~PI~~v~~f------DlrqSM~N----GGGPAC 368 (443)
T TIGR03241 322 LVVPEECRE----------------NAAVWAYLNELVAGG-------GPIDEVRVF------DLRESMRN----GGGPAC 368 (443)
T ss_pred EEechHhhc----------------CHHHHHHHHHHHhcC-------CCcceEEEe------cchhhhhc----CCCcee
Confidence 887753211 111344556655311 011222221 12222222 235667
Q ss_pred chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007222 290 ALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQ 325 (612)
Q Consensus 290 ~~lR~iKs~~EI~~~r~A~~~~~~a~~~~~~~l~~~ 325 (612)
-++|.+-++.|++.+--+..+++.-+...-.|++.-
T Consensus 369 LRLRVvl~~~E~~Avnp~~lm~~~l~~~L~~wV~~h 404 (443)
T TIGR03241 369 LRLRVVLNDAELAAVNPAVMMNDALFATLNAWVDRH 404 (443)
T ss_pred eeeeeeCCHHHHhhcCcceecCHHHHHHHHHHHHHh
Confidence 889999999999999999999988888888888753
No 86
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=26.57 E-value=1e+02 Score=25.45 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHhhcCCcEEEEcCCChhhhhhhcCCCCCCCCceeecccccCCCHHHHHHHHHHHHHhcCCC
Q 007222 99 VSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKAR 170 (612)
Q Consensus 99 is~~~y~~L~~~l~~~~~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~~~~~Rl~rlr~~m~~~gld 170 (612)
+|-.+++-|+--+.. .-+.++- +.+++.+|.+.+. .+......-+.+||+.|...+..
T Consensus 24 Lt~~e~~lL~~L~~~-~~~~vs~-~~l~~~lw~~~~~------------~~~~~l~~~I~rLRkkl~~~~~~ 81 (95)
T cd00383 24 LTPKEFELLELLARN-PGRVLSR-EQLLEAVWGDDYD------------VDDRTVDVHISRLRKKLEDDPSN 81 (95)
T ss_pred eCHHHHHHHHHHHhC-CCCcCCH-HHHHHHhcCCCCC------------CCcccHHHHHHHHHHHhccCCCC
Confidence 466666666544432 2357776 8899999965321 12255788899999999976543
No 87
>PF13989 YejG: YejG-like protein
Probab=26.00 E-value=30 Score=29.96 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.4
Q ss_pred CccccceeeeCcccC
Q 007222 22 ARDKRREFVSGFTGS 36 (612)
Q Consensus 22 ~~~~n~~YlTGFtGs 36 (612)
-=|++-||+|||+|.
T Consensus 8 RLPqsYRWlsG~~G~ 22 (106)
T PF13989_consen 8 RLPQSYRWLSGFAGV 22 (106)
T ss_pred eCCccceeccCCcCc
Confidence 447789999999986
No 88
>PRK09620 hypothetical protein; Provisional
Probab=25.17 E-value=1.6e+02 Score=29.60 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=41.4
Q ss_pred cEEEEcCCChhhhhhhcCCCCCCCCceeecccccCCC---HHHHHHHHHHHHHhcCCCEEEecCcc
Q 007222 116 QKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSS---VVEKLKELREKLTNEKARGIIITTLD 178 (612)
Q Consensus 116 ~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~~---~~~Rl~rlr~~m~~~gld~lll~~~~ 178 (612)
++|++. ++++..+++.+|. . .-+.|..++ .++-+++.++.|+++++|.++.....
T Consensus 127 l~L~~~-pdIl~~l~~~~~~----~---~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~ivaN~~~ 184 (229)
T PRK09620 127 IHFQKA-PKVLKQIKQWDPE----T---VLVGFKLESDVNEEELFERAKNRMEEAKASVMIANSPH 184 (229)
T ss_pred EEEEEC-cHHHHHHHhhCCC----C---EEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 689998 9999999865542 1 123454443 45788999999999999999988864
No 89
>PRK13607 proline dipeptidase; Provisional
Probab=22.82 E-value=2.4e+02 Score=31.34 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 007222 436 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILA 468 (612)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~P~G~~~~~v~~~~ 468 (612)
.|++-+.+.+++.++.+.++| |++-.++....
T Consensus 170 mr~A~~i~~~a~~~~~~~i~p-G~tE~ei~~~~ 201 (443)
T PRK13607 170 MREAQKIAVAGHRAAKEAFRA-GMSEFDINLAY 201 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHH
Confidence 467777778889999999999 99988887643
No 90
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=21.20 E-value=1.6e+02 Score=32.52 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=48.5
Q ss_pred hHHHHhhccCC-CEEEEEcCCCccHHHHHHhhC--CCCCEEEEcCCcccHHHHHHHHHHhhcCCcEEEEcC-CChhhhhh
Q 007222 55 YFLQATQELTG-EWKLMRMLEDPAVDVWMANNL--PNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTS-TNLVDKVW 130 (612)
Q Consensus 55 Y~eqA~~e~~~-~~~v~~~~~~~~~~~~l~~~~--~~~~~vgfE~~~is~~~y~~L~~~l~~~~~~lv~~~-~~lv~~lr 130 (612)
|.+|+.+.+.. ..+|+......+..+++.+++ .+.++|.+-.+ ++..+.. |.+.|...+++...++ .+.|-+|.
T Consensus 52 ~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~kS-~~~eeig-l~~~L~~~g~~~~etdlge~i~ql~ 129 (432)
T TIGR00273 52 YLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKS-MVSEEIG-LNEVLEKIGIEVWETDLGELILQLD 129 (432)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcCc-hHHHHhC-CHHHHHhCCCeeeeCccHHHHhhhc
Confidence 56666655432 156654332233444444433 47889988754 6666653 2233333356655431 45666777
Q ss_pred hcCCCCCCCCceeecc
Q 007222 131 KNRPPVETYPVTVQQI 146 (612)
Q Consensus 131 ~~rp~~~~~~~~~~~~ 146 (612)
.++|...-.|..+.+.
T Consensus 130 ~~~pshiv~Paih~~r 145 (432)
T TIGR00273 130 GDPPSHIVVPALHKNR 145 (432)
T ss_pred cCCCceeeeccccCCH
Confidence 7777666555555443
No 91
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=21.02 E-value=1.6e+02 Score=23.13 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHhhcCCcEEEEcCCChhhhhhhcCCCCCCCCceeecccccCCCHHHHHHHHHHHHHhcCC
Q 007222 99 VSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKA 169 (612)
Q Consensus 99 is~~~y~~L~~~l~~~~~~lv~~~~~lv~~lr~~rp~~~~~~~~~~~~~f~~~~~~~Rl~rlr~~m~~~gl 169 (612)
+|-.+++-|.--+.. .-+.++. +.+++.+|.+++. .-+...+...+.+||+.|.+.+.
T Consensus 6 Lt~~e~~lL~~L~~~-~~~~vs~-~~l~~~lw~~~~~-----------~~~~~~l~~~i~~LR~~l~~~~~ 63 (78)
T smart00862 6 LTPKEFRLLELLLRN-PGRVVSR-EELLEAVWGDDDD-----------DVDDNTLDVHISRLRKKLEDDGA 63 (78)
T ss_pred cCHHHHHHHHHHHhC-CCCccCH-HHHHHHHcCCCCC-----------CCccchHHHHHHHHHHHHhcCCC
Confidence 456666644433322 2246666 7899999965421 11235688899999999988654
Done!