BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007223
(612 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1
SV=1
Length = 603
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 52/548 (9%)
Query: 3 GARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQ 62
G L ++GY AD+L+ + F+W F+ + L W C ++ NVLS EL F
Sbjct: 4 GNEFVETLKKIGYPKADNLNGEDFDWLFEGVEDESFLKWFCGNVNEQNVLSERELEAF-S 62
Query: 63 FLQE--EKLLEGEDLESAFDSISAF---SSRRDDQEAVFGSEEGLKDIREATQAYRDEAA 117
LQ+ + +LEG L+ A + + R DD+E E L+D E + +
Sbjct: 63 ILQKSGKPILEGAALDEALKTCKTSDLKTPRLDDKEL-----EKLED--EVQTLLKLKNL 115
Query: 118 QLQRQLRHLQCQF-DMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVL 176
++QR+ + CQ +T+H S + + AT + IL+ ++ + ++ +
Sbjct: 116 KIQRRNK---CQLMASVTSHKSLRLNAKEEE--ATKKLKQSQGILNAMITKISNELQALT 170
Query: 177 GRIASTAQELAHYH--SGDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLV 234
+ H + G ++L+ YL + S L + KQ G +V
Sbjct: 171 DEVTQLMMFFRHSNLGQGTNPLVFLSQFSLEKYLSQEEQSTAALTLYTKKQFFQGIHEVV 230
Query: 235 AEEGKSKCSWVSLGDESNILVRDLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQ 294
+ + + S + D ++ +R E+ RL+ + ++ Q + + N+
Sbjct: 231 ESSNEDNFQLLDIQTPS---ICDNQEILEERRLEMARLQLAYICAQHQLIHLKASNS--- 284
Query: 295 AILMTLKSQVASDEAYIH------LDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLC 348
++KS + E +H +D +L K L E+ L + ++ ++P +
Sbjct: 285 ----SMKSSIKWAEESLHSLTSKAVDKENLDAKISSLTSEIMKLEKEVTQIKDRSLPAVV 340
Query: 349 WELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLA 408
E AQL + +++GD+DL++ +Q+ Y +RQ+ +N LI Q A + L+L+ +E R
Sbjct: 341 RENAQLLNMPVVKGDFDLQIAKQDYYTARQELVLNQLIKQKASFELLQLSYEIELRKHRD 400
Query: 409 AYSLLKVIESELQGYLSATKSRVGRCLALIEAAS---DVQEQGAVDDRDTFLHGVRDLLN 465
Y L+ + E LS + + + L ++ S + + +D +D H + +L
Sbjct: 401 IYRQLENLVQE----LSQSNMMLYKQLEMLTDPSVSQQINPRNTIDTKDYSTHRLYQVLE 456
Query: 466 AQAGLSTYVSAPGIVQQIS-GLRADLTALQSDLENS------LPGDRNRCINELC-TLIQ 517
+ G +++++ L+ +++ +Q L S RN+ ++ LC TL Q
Sbjct: 457 GENKKKELFLTHGNLEEVAEKLKQNISLVQDQLAVSAQEHSFFLSKRNKDVDMLCDTLYQ 516
Query: 518 SLQQLLFA 525
QLL +
Sbjct: 517 GGNQLLLS 524
>sp|Q6DCY9|HAUS3_XENLA HAUS augmin-like complex subunit 3 OS=Xenopus laevis GN=haus3 PE=2
SV=1
Length = 597
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 144/627 (22%), Positives = 267/627 (42%), Gaps = 57/627 (9%)
Query: 1 MSGA-RLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQ 59
MSG R L +L Y LD + F+W F+ D +P LDW CS+ NV+ +L
Sbjct: 1 MSGGDRFVQTLQKLNYPKGAQLDGEDFDWLFEAVDLKPFLDWFCSAASEQNVVPDEKLQA 60
Query: 60 FEQFLQEEK-LLEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQ 118
F + K +L+ + L+ + S ++ A+ EE +K A Q
Sbjct: 61 FNTLKESGKPVLDEKALDEVLKTFSISKVPAIEEVAIEKLEEEVK------------ALQ 108
Query: 119 LQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGR 178
Q+ L H++ + + + +++ T +L L N ++N L
Sbjct: 109 KQKNL-HIRRRNKLQMVESGNRQMCLKSKDKEEETGRAFQEVLH-LLRVTNKKLNHELQS 166
Query: 179 IASTAQELAHYHSGDEDG-------IYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPF 231
I + Q L + S E I+L+ YL + S L + + G
Sbjct: 167 IVNGVQTLMSFFSTPETACELSSQPIFLSQLLLDKYLSLEEQSTAALTSFTKEHFFEGMS 226
Query: 232 RLVAEEGKSKCSWVSLGDESNILVRDLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENA 291
+ V E V L N+ + + + E+ RL+ + ++ + ++ + ++A
Sbjct: 227 KFV-EGSDENFQLVQL----NVNSFGEDGTTEDKCKEMMRLQLAYICAKHKLIQMKAKSA 281
Query: 292 KQQAILMTLKSQVASDEAYIHLDFHSLKRKHVE-----LVGELSNLHHKEEKLLSETIPD 346
+ L Q A + A + D S K ++++ L E + + + +E +P
Sbjct: 282 SLKVGL-----QWAENNASVVQDKASQKEENLKVRITSLKNETLQIENHTNSISNEKLPG 336
Query: 347 LCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNM 406
L + AQL + I++GDYDL++ Q SRQ +HL+ Q A + L+L LE R
Sbjct: 337 LVRDNAQLLNMPIVKGDYDLQMAHQTSCSSRQDLVCDHLMKQKASFELLQLGYELELRKH 396
Query: 407 LAAYSLLKVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGVRDLL-- 464
Y L I EL+ + R+ L+ + S + + +D +D H + LL
Sbjct: 397 RDVYRELGSIVQELKESGDKLEERL-TMLSDVNLLSASKPRSNIDSKDLTSHRLYQLLDG 455
Query: 465 -NAQAGLSTYVSAPGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTLIQSLQQLL 523
N Q TY + Q++S D+ +++ LE S + + +++L + ++ L+ +
Sbjct: 456 DNTQKLFRTYDGLESVAQKLS---QDIASMRDQLEVS-EQEHSLLLSKLDSHLKELRDFM 511
Query: 524 FASSTTAQPILTPRPLMKEL----DEMEKINAKLSVAVEEVTLEHCKKNEIIKHHSQEVG 579
+ T +LT L E ++EK+N + VE + K+ + + Q++
Sbjct: 512 YPEGNTL--MLTTPELSGEFHQLGSQLEKLN---HITVEILGDLQLKRKMLESNKLQQI- 565
Query: 580 LQRRVFVDFFCNPERLRSQVRELTARV 606
+++++V FF N E+L+S V +L A+
Sbjct: 566 -EKQLYVYFFQNEEQLKSIVGKLEAQT 591
>sp|Q8QZX2|HAUS3_MOUSE HAUS augmin-like complex subunit 3 OS=Mus musculus GN=Haus3 PE=2
SV=1
Length = 570
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/511 (20%), Positives = 223/511 (43%), Gaps = 41/511 (8%)
Query: 3 GARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQ 62
G L ++GY AD L+ + F+W F+ + L W C ++ NVLS EL F
Sbjct: 4 GNEFVETLKKIGYPKADILNGEDFDWLFEDVEDESFLKWFCGNVNEQNVLSEKELEAFSD 63
Query: 63 FLQEEK-LLEGEDLESAFDSISAF---SSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQ 118
+ K +LEG L+ + F + + DD+E +E ++ +++ + +
Sbjct: 64 LQRSGKPILEGTALDEVLRTCKTFDLKTCKLDDKEIQILEDE-VQTLQKLNNSKIQRRNK 122
Query: 119 LQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGR 178
Q + +F L A + + + ++VN LS GL+ ++N+++
Sbjct: 123 YQLMVSETSYRFLALNAKQEEATKKLKQKQGFLNSVNTKLSNELQGLTE---EVNNLMIF 179
Query: 179 IASTAQELAHYHSGDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEG 238
+ ++ ++L+ Y+ + S L + KQ G +V
Sbjct: 180 FRN-----SNLSERTNPMVFLSQFPLGKYISQEEQSTAALTLYTKKQFFQGMHEVVESSN 234
Query: 239 KSKCSWVSLGDESNILVRDLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILM 298
+ + + S + D E+ +R E+ RL+ ++Q + + N +
Sbjct: 235 EDNFQLLDIQTPS---ICDNEEILRERRLEMARLQMACICVQKQIIYLKTSN-------L 284
Query: 299 TLKSQVASDEAYIH------LDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELA 352
++KS + E ++ +D +L + L E+ L + + + +P + E A
Sbjct: 285 SMKSSIKWAEENLNRLTNEVIDKENLDAEISSLNSEILKLEEQITHIKDKVLPAVVKEYA 344
Query: 353 QLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSL 412
QL + +++GD++L++ +Q+ Y +RQ+ +N LI Q A + ++L+ +E R Y
Sbjct: 345 QLLNMPVVKGDFELQIAKQDYYTARQELVLNELIKQKASFELVQLSYEIELRKHWDTY-- 402
Query: 413 LKVIESELQGYLSATKSRVGRCLAL---IEAASDVQEQGAVDDRDTFLHGVRDLL---NA 466
+ +ES +Q LS + + + LA+ I A+ + + +D +D H + +LL N
Sbjct: 403 -RQLESLVQQ-LSQRNTVLCQHLAVLSDIPASEQLTSRTPIDTKDHSTHRLYELLEGDNK 460
Query: 467 QAGLSTYVSAPGIVQQISGLRADLTALQSDL 497
+ L +++ + + L+ D++ +Q L
Sbjct: 461 KKEL--FITHEHLEEVAEKLKQDVSVIQDQL 489
>sp|Q7MYZ0|PNP_PHOLL Polyribonucleotide nucleotidyltransferase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=pnp PE=3
SV=1
Length = 709
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 233 LVAEEGKSKCSWVSLGDESNILVRDLEKSHHQRVSEL--QRLRSVFGTSERQWVEAQVEN 290
L AE GK K +WV + ++ H RV+ L RL + +E+Q AQV+
Sbjct: 222 LAAEAGKEKWNWVP---------ESVNQALHDRVAGLAEDRLGDAYRITEKQERYAQVDA 272
Query: 291 AKQQAILMTLKSQVASDEAYIHLDFHSLKRKHV 323
K++ L+ A +EA IH SL++K V
Sbjct: 273 IKEEVTAALLEQDEALEEAEIHEILGSLEKKVV 305
>sp|P41121|PNP_PHOLU Polyribonucleotide nucleotidyltransferase OS=Photorhabdus
luminescens GN=pnp PE=1 SV=1
Length = 709
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 233 LVAEEGKSKCSWVSLGDESNILVRDLEKSHHQRVSEL--QRLRSVFGTSERQWVEAQVEN 290
L AE GK K WV + ++ H RV+EL RL + +E+Q AQV+
Sbjct: 222 LAAEAGKEKWDWVP---------EPVNQALHDRVAELAESRLGDAYRITEKQERYAQVDA 272
Query: 291 AKQQAILMTLKSQVASDEAYIHLDFHSLKRKHV 323
K + L+ +EA IH SL++ V
Sbjct: 273 IKDEVTAALLEQDETLEEAEIHEILGSLEKNVV 305
>sp|Q04DS4|GLMU_OENOB Bifunctional protein GlmU OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=glmU PE=3 SV=1
Length = 426
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 24 DSFEWPFQYDDARPILDWICSSLR---PSNVLSL----SELSQF--EQFLQEEKLLEGED 74
D P P+L+WIC ++R P N++++ + S + E +Q+E+L +
Sbjct: 19 DDLSKPLHKVAGLPMLEWICRAVRKFNPKNIIAVQGADEDFSSYVDETVVQKEQLGSADA 78
Query: 75 LESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLR 124
L AF I A + + +E L D+ E + + +AA L L+
Sbjct: 79 LRCAFPKIDAEKLIVINADMPLMTENDLVDLVEKGEGF--DAALLTADLK 126
>sp|B2UNE3|GSA_AKKM8 Glutamate-1-semialdehyde 2,1-aminomutase OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=hemL PE=3 SV=1
Length = 426
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 453 RDTFLHGVRD-------LLNAQAGLSTYVSAPGIVQQISGLRADLTALQSDLENSLPGDR 505
++ FLH +R+ LL ++ + APG VQQ+ G+ DLT + + LP
Sbjct: 216 QNDFLHFLREITLRHDTLLIFDEVMTGFRVAPGGVQQLYGITPDLTCMGKVIGGGLPVGA 275
Query: 506 NRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINA-----KLSVAVEEV 560
+E+ + L + A + + P+ L +L E+ K NA +L +EE
Sbjct: 276 FGGRSEIMDCLSPLGPVYQAGTLSGNPVAMAAGL-AQLRELLKGNAYERLEQLGARMEEG 334
Query: 561 TLEHCKKN 568
E KK+
Sbjct: 335 IREALKKH 342
>sp|Q4A172|SYS_STAS1 Serine--tRNA ligase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=serS
PE=3 SV=1
Length = 427
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 114 DEAAQLQRQLRHLQCQFDMLTAH----ASTLMQGRRAR------VAATSTVNGHLSILDD 163
DE +L Q R L Q + + A + + Q +R + +AA + + +LDD
Sbjct: 29 DEVLELDEQRRQLISQAEEMKAERNKVSGEIAQKKRNKEDADDAIAAMRNLGDEIKVLDD 88
Query: 164 GLSARNLQMNDVLGRIASTAQELAHYHSGDEDGI 197
L+ ++ +ND L RI + + + DED I
Sbjct: 89 TLNQVDVDLNDKLSRIPNIIHDDVPEGATDEDNI 122
>sp|Q3JCY9|RECO_NITOC DNA repair protein RecO OS=Nitrosococcus oceani (strain ATCC 19707
/ NCIMB 11848) GN=recO PE=3 SV=1
Length = 246
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 198 YLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEE 237
YL Y Y G S + E QW+S QL+ GP RL++E+
Sbjct: 141 YLGYGLILKYEAGTSRPI-EAGQWYSYQLEKGPVRLLSED 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,472,165
Number of Sequences: 539616
Number of extensions: 8385913
Number of successful extensions: 29177
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 29031
Number of HSP's gapped (non-prelim): 287
length of query: 612
length of database: 191,569,459
effective HSP length: 123
effective length of query: 489
effective length of database: 125,196,691
effective search space: 61221181899
effective search space used: 61221181899
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)