Query 007223
Match_columns 612
No_of_seqs 83 out of 85
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 20:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14932 HAUS-augmin3: HAUS au 100.0 7.8E-56 1.7E-60 452.5 22.3 249 28-291 1-256 (256)
2 PRK11637 AmiB activator; Provi 93.5 5.6 0.00012 44.2 19.0 60 99-158 46-105 (428)
3 PF00038 Filament: Intermediat 91.7 3.3 7.2E-05 43.6 13.7 81 106-186 53-136 (312)
4 PF14932 HAUS-augmin3: HAUS au 88.0 3.6 7.8E-05 42.8 10.1 132 26-185 12-150 (256)
5 PF07888 CALCOCO1: Calcium bin 79.6 1.3E+02 0.0028 35.0 19.5 59 262-335 328-386 (546)
6 PF13870 DUF4201: Domain of un 71.7 43 0.00094 32.6 10.7 107 262-384 58-164 (177)
7 KOG0964 Structural maintenance 69.2 1.3E+02 0.0028 37.2 15.4 29 55-83 208-240 (1200)
8 COG4942 Membrane-bound metallo 66.8 2.3E+02 0.0049 32.0 19.5 94 100-200 38-138 (420)
9 PF12128 DUF3584: Protein of u 66.1 3.7E+02 0.008 34.3 31.0 451 32-570 535-1025(1201)
10 KOG0804 Cytoplasmic Zn-finger 65.6 39 0.00085 38.0 9.7 85 109-193 370-454 (493)
11 PF15397 DUF4618: Domain of un 63.5 1.7E+02 0.0037 30.9 13.6 53 124-186 41-93 (258)
12 PRK11637 AmiB activator; Provi 60.9 2.7E+02 0.0059 30.9 18.8 133 268-405 55-195 (428)
13 PF09730 BicD: Microtubule-ass 60.6 3.7E+02 0.0081 32.4 26.7 51 555-608 636-686 (717)
14 KOG4674 Uncharacterized conser 58.3 5.9E+02 0.013 34.0 35.0 143 267-429 1060-1202(1822)
15 PF04111 APG6: Autophagy prote 54.7 75 0.0016 34.2 9.6 43 99-141 49-91 (314)
16 PF04201 TPD52: Tumour protein 52.5 1E+02 0.0022 30.3 9.1 39 97-135 26-64 (162)
17 PF12325 TMF_TATA_bd: TATA ele 52.3 1.1E+02 0.0023 28.7 8.9 75 101-179 17-91 (120)
18 PF04912 Dynamitin: Dynamitin 51.1 3.7E+02 0.0081 29.6 21.5 114 477-610 264-388 (388)
19 PF04111 APG6: Autophagy prote 51.0 1.4E+02 0.003 32.2 10.8 44 99-142 42-85 (314)
20 COG4372 Uncharacterized protei 51.0 1.3E+02 0.0027 33.6 10.3 74 93-170 71-144 (499)
21 PF14915 CCDC144C: CCDC144C pr 50.7 3.6E+02 0.0077 29.2 21.5 160 315-503 65-243 (305)
22 PF12718 Tropomyosin_1: Tropom 49.5 1.8E+02 0.004 27.7 10.3 86 98-183 19-107 (143)
23 COG0497 RecN ATPase involved i 48.9 4.4E+02 0.0096 30.9 14.9 80 262-345 302-381 (557)
24 KOG0612 Rho-associated, coiled 48.4 7E+02 0.015 32.0 32.0 86 98-187 463-549 (1317)
25 PF08232 Striatin: Striatin fa 45.9 1.1E+02 0.0024 28.9 8.2 57 381-437 5-61 (134)
26 COG3074 Uncharacterized protei 44.5 95 0.0021 26.5 6.5 52 100-151 25-76 (79)
27 KOG4674 Uncharacterized conser 41.2 1E+03 0.023 31.9 36.3 30 99-128 688-717 (1822)
28 KOG4360 Uncharacterized coiled 39.9 3.8E+02 0.0083 31.1 12.2 71 316-393 162-246 (596)
29 PRK10869 recombination and rep 38.6 4.9E+02 0.011 30.3 13.5 30 262-291 301-330 (553)
30 PRK14127 cell division protein 38.3 1.5E+02 0.0032 27.3 7.4 49 88-139 21-69 (109)
31 PF08317 Spc7: Spc7 kinetochor 38.1 1.7E+02 0.0038 31.4 9.2 79 101-186 210-288 (325)
32 PF14662 CCDC155: Coiled-coil 37.2 3.1E+02 0.0068 27.7 10.0 85 101-186 30-114 (193)
33 PF07798 DUF1640: Protein of u 36.8 3.3E+02 0.0071 26.6 10.2 17 2-18 3-19 (177)
34 PF03962 Mnd1: Mnd1 family; I 36.6 3.1E+02 0.0068 27.3 10.1 11 217-227 160-170 (188)
35 PF13851 GAS: Growth-arrest sp 34.4 2.6E+02 0.0055 28.2 9.2 9 162-170 138-146 (201)
36 PRK10884 SH3 domain-containing 34.2 3.1E+02 0.0066 27.9 9.7 21 108-128 94-114 (206)
37 KOG0161 Myosin class II heavy 32.1 1.5E+03 0.032 30.9 38.6 98 334-433 1583-1682(1930)
38 cd07627 BAR_Vps5p The Bin/Amph 32.0 5.4E+02 0.012 25.9 13.8 50 279-339 113-162 (216)
39 PF03634 TCP: TCP family trans 31.2 21 0.00044 33.6 0.7 26 3-32 29-54 (138)
40 COG1382 GimC Prefoldin, chaper 30.7 1.5E+02 0.0033 27.7 6.2 40 99-138 69-108 (119)
41 PF07106 TBPIP: Tat binding pr 29.9 2.7E+02 0.0058 26.8 8.3 56 281-345 86-141 (169)
42 PF11559 ADIP: Afadin- and alp 29.9 4.4E+02 0.0096 24.8 9.6 16 8-23 9-24 (151)
43 cd08776 DED_Caspase-like_repea 29.1 78 0.0017 26.9 3.8 50 35-86 16-65 (71)
44 PF07851 TMPIT: TMPIT-like pro 29.1 4.4E+02 0.0094 28.9 10.3 30 410-441 216-245 (330)
45 KOG2391 Vacuolar sorting prote 28.0 3E+02 0.0066 30.2 8.7 34 104-137 243-276 (365)
46 TIGR00634 recN DNA repair prot 27.9 9.3E+02 0.02 27.9 13.6 29 262-290 306-334 (563)
47 cd07638 BAR_ACAP2 The Bin/Amph 27.9 3.9E+02 0.0084 27.1 9.2 52 170-230 57-114 (200)
48 PF05103 DivIVA: DivIVA protei 27.8 36 0.00077 31.1 1.7 50 89-141 17-66 (131)
49 PF15619 Lebercilin: Ciliary p 27.3 5.4E+02 0.012 25.9 10.0 86 101-186 20-108 (194)
50 COG1579 Zn-ribbon protein, pos 26.4 5.8E+02 0.012 26.7 10.2 50 91-140 29-78 (239)
51 PF09304 Cortex-I_coil: Cortex 25.9 3.6E+02 0.0078 24.9 7.6 44 108-151 24-67 (107)
52 PF03801 Ndc80_HEC: HEC/Ndc80p 25.6 19 0.00042 34.8 -0.6 38 5-46 96-139 (157)
53 PRK10884 SH3 domain-containing 24.6 4.3E+02 0.0092 26.9 8.8 24 101-124 94-117 (206)
54 PRK15422 septal ring assembly 24.4 3.3E+02 0.0072 23.8 6.7 41 101-141 26-66 (79)
55 PF11559 ADIP: Afadin- and alp 24.3 6E+02 0.013 23.9 10.4 41 101-141 53-93 (151)
56 KOG1962 B-cell receptor-associ 23.8 2.2E+02 0.0049 29.2 6.6 51 99-149 150-200 (216)
57 COG3883 Uncharacterized protei 23.7 3.3E+02 0.0072 28.9 8.0 34 108-141 39-72 (265)
58 PF09006 Surfac_D-trimer: Lung 23.5 68 0.0015 25.2 2.2 19 593-611 2-20 (46)
59 PF09727 CortBP2: Cortactin-bi 23.3 7.9E+02 0.017 24.9 12.0 92 342-433 57-152 (192)
60 cd07602 BAR_RhoGAP_OPHN1-like 22.4 7.5E+02 0.016 25.3 10.0 20 172-191 65-84 (207)
61 PRK09039 hypothetical protein; 22.3 5.5E+02 0.012 28.0 9.8 41 101-141 117-157 (343)
62 PF08172 CASP_C: CASP C termin 22.3 6.9E+02 0.015 26.1 10.0 62 377-438 76-137 (248)
63 PF04740 LXG: LXG domain of WX 22.1 3.9E+02 0.0084 26.2 7.9 28 100-127 98-126 (204)
64 PF15456 Uds1: Up-regulated Du 21.7 6.4E+02 0.014 23.6 8.7 83 98-184 20-102 (124)
65 PF08317 Spc7: Spc7 kinetochor 21.7 1E+03 0.022 25.6 22.9 88 316-433 78-167 (325)
66 KOG0288 WD40 repeat protein Ti 21.4 9.3E+02 0.02 27.3 11.1 87 317-414 45-131 (459)
67 PRK15422 septal ring assembly 21.4 5.6E+02 0.012 22.4 8.2 34 109-142 6-39 (79)
68 PF08614 ATG16: Autophagy prot 21.0 4.4E+02 0.0096 26.1 8.1 98 73-187 81-178 (194)
69 PF06120 Phage_HK97_TLTM: Tail 21.0 5.5E+02 0.012 27.8 9.2 35 102-136 76-110 (301)
70 PF15290 Syntaphilin: Golgi-lo 21.0 6.8E+02 0.015 26.9 9.5 47 263-342 93-139 (305)
71 TIGR00293 prefoldin, archaeal 20.9 5.4E+02 0.012 23.3 8.1 38 104-141 3-40 (126)
72 cd07603 BAR_ACAPs The Bin/Amph 20.8 7.4E+02 0.016 24.9 9.7 55 171-229 58-113 (200)
73 TIGR03752 conj_TIGR03752 integ 20.7 6.4E+02 0.014 29.0 9.9 42 101-142 60-101 (472)
74 PRK03947 prefoldin subunit alp 20.1 7E+02 0.015 23.1 9.7 43 99-141 5-47 (140)
No 1
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=100.00 E-value=7.8e-56 Score=452.47 Aligned_cols=249 Identities=31% Similarity=0.419 Sum_probs=226.0
Q ss_pred ccCCCCCchhHHHHHHccCCCCCCCCHHHHhHHHHHHhcccCCChhhHHHHHhhcccccCCCCchhhhccchhhhhHHHH
Q 007223 28 WPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIRE 107 (612)
Q Consensus 28 Wlf~~~e~~~FL~Wfc~nV~~~NVLS~~EL~~f~~L~~sGkiLeg~~Ld~al~~i~~~~~~~~~~e~~~~~ee~le~l~~ 107 (612)
|||++|+++|||+|||+||+++||||++|+++|++|+++||||+|+|||+||++|++++.+..++++ .
T Consensus 1 Wlf~~~e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e------------~ 68 (256)
T PF14932_consen 1 WLFDDEEFESFLDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELEE------------E 68 (256)
T ss_pred CCCCCccHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccch------------H
Confidence 9999999999999999999999999999999999999999999999999999999997666555533 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHHHHHHHHHHh
Q 007223 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELA 187 (612)
Q Consensus 108 ~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~l~~~v~~L~ 187 (612)
++++|+++++.++++++..++++|+|+.+++.+++....+....++++..+++.+..+.+.+.++|+.++.+++.|++++
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~ 148 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLA 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999999988888888888888888887
Q ss_pred hc----ccC--CCCccceeccCChhhhhhchhhHHHHHHHHHhhccCCcccccccccCccccccccCccccccch-hhhh
Q 007223 188 HY----HSG--DEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSLGDESNILVR-DLEK 260 (612)
Q Consensus 188 ~~----~s~--~~~gvflsq~~le~Yl~~ee~~t~~Lt~y~kKqF~~G~~~~v~~e~~~~~~~~qL~D~~~~~~d-~~e~ 260 (612)
++ +++ ++||+|||||||++|+++|++||+|||.||||||++||+++| |+++.++|+ +.|+++|+++ +.++
T Consensus 149 ~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kKqF~~g~~~~~--e~s~~~~~~-lld~~~~~~~~d~~e 225 (256)
T PF14932_consen 149 SELAHAHSGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKKQFFQGISELV--ESSNEDNFQ-LLDISNPSIRGDEEE 225 (256)
T ss_pred HHHHHhcccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHHhcccccchhh--ccccchhhH-HhhccccccccchHH
Confidence 54 444 678899999999999999999999999999999999999999 677778877 8889999985 5566
Q ss_pred hhhhhHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 007223 261 SHHQRVSELQRLRSVFGTSERQWVEAQVENA 291 (612)
Q Consensus 261 ~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~ 291 (612)
.+++|+.||+|||++|+||+||||.|+|+++
T Consensus 226 ~~~~~~~EL~rLq~~~~~aq~q~I~~ka~~~ 256 (256)
T PF14932_consen 226 VLEERRSELARLQSAYICAQHQLIQAKAEVA 256 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666677999999999999999999999863
No 2
>PRK11637 AmiB activator; Provisional
Probab=93.52 E-value=5.6 Score=44.18 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchh
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHL 158 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L 158 (612)
.+.+++++..+..+..++..+++.+.....+++.++.....+.........+....+..+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei 105 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI 105 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777777777777777777766666555544433333444444444
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.75 E-value=3.3 Score=43.57 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcch---hhhhhhhhhhhHHHHHHHHH
Q 007223 106 REATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILD---DGLSARNLQMNDVLGRIAST 182 (612)
Q Consensus 106 ~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~---~~l~~~n~~~n~~L~~l~~~ 182 (612)
+.++..++..+.++...+..+..+++.+...+..+........+....+...+.... +........+.+.++.+...
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE 132 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE 132 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 345566666666666666666666666666555544333222222223322222211 34445555566666666665
Q ss_pred HHHH
Q 007223 183 AQEL 186 (612)
Q Consensus 183 v~~L 186 (612)
..-+
T Consensus 133 l~fl 136 (312)
T PF00038_consen 133 LEFL 136 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 4
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=88.04 E-value=3.6 Score=42.78 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=70.3
Q ss_pred CcccCCCCC-----chhHHHHHHccCCCCCCCCHHHHh-HHHHHHhcc-cCCChhhHHHHHhhcccccCCCCchhhhccc
Q 007223 26 FEWPFQYDD-----ARPILDWICSSLRPSNVLSLSELS-QFEQFLQEE-KLLEGEDLESAFDSISAFSSRRDDQEAVFGS 98 (612)
Q Consensus 26 fdWlf~~~e-----~~~FL~Wfc~nV~~~NVLS~~EL~-~f~~L~~sG-kiLeg~~Ld~al~~i~~~~~~~~~~e~~~~~ 98 (612)
|+|+|.+.. +..=+.=|-.=+...+||+.++|. ++....... +.++=+ ..+.++.
T Consensus 12 L~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~---------------e~~le~L--- 73 (256)
T PF14932_consen 12 LDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELE---------------EEDLEAL--- 73 (256)
T ss_pred HHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccc---------------hHHHHHH---
Confidence 567775433 222233333334666799999998 444444331 121111 1223332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHH
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGR 178 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~ 178 (612)
+++++.|++..+.+......++...+.+.+...+|++... . +....++..+...+.+..+|..||.+++.
T Consensus 74 e~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~--------~--~~~~l~~~~~~l~~~~~k~~~~l~~l~~~ 143 (256)
T PF14932_consen 74 EEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEE--------E--AQKKLKKAQKELSAECSKLNNELNQLLGE 143 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555666666666666666666665555555321 1 11111222222556788889989999888
Q ss_pred HHHHHHH
Q 007223 179 IASTAQE 185 (612)
Q Consensus 179 l~~~v~~ 185 (612)
++..+..
T Consensus 144 v~~l~~~ 150 (256)
T PF14932_consen 144 VSKLASE 150 (256)
T ss_pred HHHHHHH
Confidence 8777653
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.63 E-value=1.3e+02 Score=35.01 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHH
Q 007223 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHK 335 (612)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~ 335 (612)
|..|+ |.+.|....+-+..++...++.......+|..- ++.-+.+|..|+.++..++..
T Consensus 328 h~aRL-e~aql~~qLad~~l~lke~~~q~~qEk~~l~~~--------------~e~~k~~ie~L~~el~~~e~~ 386 (546)
T PF07888_consen 328 HQARL-EAAQLKLQLADASLELKEGRSQWAQEKQALQHS--------------AEADKDEIEKLSRELQMLEEH 386 (546)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHHHHHH
Confidence 44455 666666555555556666666655555544421 134456677777777666544
No 6
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=71.73 E-value=43 Score=32.60 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHHHHHhhc
Q 007223 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 341 (612)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~ 341 (612)
.+.|-.||.+|+..++.+-+.+-+.+-......+-+..++......... ...++..+..+..+...++.....+
T Consensus 58 IeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~----~~~~r~~l~~~k~~r~k~~~~~~~l-- 131 (177)
T PF13870_consen 58 IEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE----LAKLREELYRVKKERDKLRKQNKKL-- 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3556669999999998888887777766666666666666554322211 2244444445555555454444443
Q ss_pred ccchHHHHHhhchhccccccchhhHHHHhHHHHHHHHHHHHHH
Q 007223 342 ETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINH 384 (612)
Q Consensus 342 ~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~vin~ 384 (612)
+.-..+.++|-|--||+-.+ ++....++.|.++
T Consensus 132 -------~~~~~~~~~P~ll~Dy~~~~---~~~~~l~~~i~~l 164 (177)
T PF13870_consen 132 -------RQQGGLLGVPALLRDYDKTK---EEVEELRKEIKEL 164 (177)
T ss_pred -------HHhcCCCCCcHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 44457789999999995554 5555555555554
No 7
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.25 E-value=1.3e+02 Score=37.22 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=19.4
Q ss_pred HHHhHHHHHHhcccCCC----hhhHHHHHhhcc
Q 007223 55 SELSQFEQFLQEEKLLE----GEDLESAFDSIS 83 (612)
Q Consensus 55 ~EL~~f~~L~~sGkiLe----g~~Ld~al~~i~ 83 (612)
+||+.|..|.+.-+.|| ..++.++...+.
T Consensus 208 eeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~ 240 (1200)
T KOG0964|consen 208 EELEKYQKLDKERRSLEYTIYDRELNEINGELE 240 (1200)
T ss_pred HHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHH
Confidence 67899999998877665 344555444443
No 8
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=66.81 E-value=2.3e+02 Score=32.03 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHHH
Q 007223 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRI 179 (612)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~l 179 (612)
..++.++.++++++.++..-+++...|+.++..++.-.+.+.+..+ +....+++....++..|..++..-.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~-------~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI-------ETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5788888899999999999999999998888888887666664333 333334333333444444444443333
Q ss_pred HHHHHHHh-----hcccCCCCc--ccee
Q 007223 180 ASTAQELA-----HYHSGDEDG--IYLA 200 (612)
Q Consensus 180 ~~~v~~L~-----~~~s~~~~g--vfls 200 (612)
..--..|+ .|.++.+|| +.++
T Consensus 111 r~qr~~La~~L~A~~r~g~~p~~~ll~~ 138 (420)
T COG4942 111 REQRRRLAEQLAALQRSGRNPPPALLVS 138 (420)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhhcC
Confidence 22222333 345665554 4444
No 9
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=66.13 E-value=3.7e+02 Score=34.27 Aligned_cols=451 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHccCCCC------CCCCHHHHhHHHHHHhcccCCChhhHHHHHhhcc---cccCCCCchhhhccchhhh
Q 007223 32 YDDARPILDWICSSLRPS------NVLSLSELSQFEQFLQEEKLLEGEDLESAFDSIS---AFSSRRDDQEAVFGSEEGL 102 (612)
Q Consensus 32 ~~e~~~FL~Wfc~nV~~~------NVLS~~EL~~f~~L~~sGkiLeg~~Ld~al~~i~---~~~~~~~~~e~~~~~ee~l 102 (612)
+|.--+|+.|++.+ .|. -|+.|+-|.+ .+|.=++..-. ++-|..-+.+.. ..
T Consensus 535 ~p~~gSL~~fL~~~-~p~We~tIGKVid~eLL~r-------------~dL~P~l~~~~~~dslyGl~LdL~~I-----~~ 595 (1201)
T PF12128_consen 535 DPQKGSLLEFLRKN-KPGWEQTIGKVIDEELLYR-------------TDLEPQLVEDSGSDSLYGLSLDLSAI-----DV 595 (1201)
T ss_pred CCCCCcHHHHHHhC-CCcHHHHhHhhCCHHHhcC-------------CCCCCeecCCCcccccceeEeehhhc-----CC
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHHHHHH
Q 007223 103 KDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIAST 182 (612)
Q Consensus 103 e~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~l~~~ 182 (612)
.+.-...++|+.+++.+..++..+..+...++......+.....+..+...+...+++.+..+...+...++.-.++...
T Consensus 596 pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 675 (1201)
T PF12128_consen 596 PDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA 675 (1201)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcccCCCCccceeccCChhhhhhchhhHHHHHHHHHhhccCCcccccccccCccccccccCccccccchhhhhhh
Q 007223 183 AQELAHYHSGDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSLGDESNILVRDLEKSH 262 (612)
Q Consensus 183 v~~L~~~~s~~~~gvflsq~~le~Yl~~ee~~t~~Lt~y~kKqF~~G~~~~v~~e~~~~~~~~qL~D~~~~~~d~~e~~~ 262 (612)
..+-..-....-. .+..=. +++.+++..... +-.+...
T Consensus 676 ~~~~~~~~~~~l~---------------------~l~~~l-~~~~~e~~~~~~--------------------~~~~~~~ 713 (1201)
T PF12128_consen 676 KEERKEQIEEQLN---------------------ELEEEL-KQLKQELEELLE--------------------ELKEQLK 713 (1201)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHH-HHHHHHHHHHHH--------------------HHHHHHH
Q ss_pred hhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHH--------HHHHHHHhhhcccccccccccchhhh-hHhhHHHHHHhHH
Q 007223 263 HQRVSELQRLRSVFGTSERQWVEAQVENAKQQ--------AILMTLKSQVASDEAYIHLDFHSLKR-KHVELVGELSNLH 333 (612)
Q Consensus 263 e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~--------a~L~~l~~~~~~~~~~~~~d~~~L~~-ki~~l~~el~~L~ 333 (612)
+.+..-.++.+-.-+--..+.-....+....+ +.-.+......|+ -++. .|..++.+|..|+
T Consensus 714 e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~---------GvD~~~I~~l~~~i~~L~ 784 (1201)
T PF12128_consen 714 ELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGK---------GVDPERIQQLKQEIEQLE 784 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcccchHHHHHhhchhccccccchhhHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007223 334 HKEEKLLSETIPDLCWELAQLQDTYILQGDYDLKVM------RQELYISRQKAFINHLINQLARHQFLRLACHLEKRNML 407 (612)
Q Consensus 334 ~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~dLqia------RQ~yy~srQ~~vin~Li~Q~Ar~elL~la~e~E~r~~~ 407 (612)
..|..| +.=-+.|.++=. -++..| .. +..-+..+-..+-..+-.-...+.-+.=.++....++.
T Consensus 785 ~~l~~i--e~~r~~V~eY~~-----~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le 854 (1201)
T PF12128_consen 785 KELKRI--EERRAEVIEYED-----WLQEEW---DKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELE 854 (1201)
T ss_pred HHHHHH--HHhHHHHHHHHH-----HHHHHH---HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhccccCCCCCcchhhHHHHHHHh-ccccCcccccChhh---HHHHH
Q 007223 408 AAYSLLKVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGVRDLL-NAQAGLSTYVSAPG---IVQQI 483 (612)
Q Consensus 408 ~~~~lL~~l~~eL~~~~~~~~~R~~~~~~~~q~~~~~~~~~~Id~rD~~~~rL~~lL-~~q~~~~~y~s~~~---L~~~~ 483 (612)
.....++....++......+..-+..+..+..+++...+.+.|+.+-..+.-+...+ ...+.+..++.... ....+
T Consensus 855 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~ 934 (1201)
T PF12128_consen 855 EELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHSG 934 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHHHhhhhcCccc------------hhhhHHHHHHHHHHHHHhhhccCCCCCCccCChhhhHHHHHHHHHHH
Q 007223 484 SGLRADLTALQSDLENSLPGD------------RNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINA 551 (612)
Q Consensus 484 ~~L~~~l~~lq~~L~~~~~e~------------~~~~~~~L~~~~~~l~q~~~~~s~~~q~~Lt~~el~~~l~~le~~~~ 551 (612)
+.+........+......... +...++.+...++..-.-.| -.-...|.+-+..|..++.
T Consensus 935 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~e~~--------~~~~~~i~~f~~~l~~~~r 1006 (1201)
T PF12128_consen 935 SELAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELLDVLIPQQQQALIEQG--------RNIGNDISNFYGVLEDFDR 1006 (1201)
T ss_pred cchHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q 007223 552 KLSVAVEEVTLEHCKKNEI 570 (612)
Q Consensus 552 ~L~~~~~dv~~~~~~Kr~~ 570 (612)
.+...-.++..++..+..+
T Consensus 1007 ~I~~~s~~l~~~v~~~~~~ 1025 (1201)
T PF12128_consen 1007 RIKSQSRRLSREVSEDLFF 1025 (1201)
T ss_pred HHHHHHHHHHHHHhhhccc
No 10
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.58 E-value=39 Score=38.02 Aligned_cols=85 Identities=11% Similarity=0.182 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 007223 109 TQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELAH 188 (612)
Q Consensus 109 ~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~l~~~v~~L~~ 188 (612)
...++.+.+.+++.+..++.++++++..........+.++..-..-.+++++.++..+..+......++.|..-+..|+.
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 34445555555555566666666665555544444455555556666777777777888888888888888888888988
Q ss_pred cccCC
Q 007223 189 YHSGD 193 (612)
Q Consensus 189 ~~s~~ 193 (612)
|..++
T Consensus 450 ~le~q 454 (493)
T KOG0804|consen 450 FLEAQ 454 (493)
T ss_pred ehhhh
Confidence 76544
No 11
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=63.55 E-value=1.7e+02 Score=30.85 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=29.0
Q ss_pred HHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHHHHHHHHHH
Q 007223 124 RHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQEL 186 (612)
Q Consensus 124 ~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~l~~~v~~L 186 (612)
..+.++.+.+....+.+.+.. .+.+..+...|.+...+++..+..|...+..|
T Consensus 41 r~lLqqy~~~~~~i~~le~~~----------~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l 93 (258)
T PF15397_consen 41 RKLLQQYDIYRTAIDILEYSN----------HKQLQQAKAELQEWEEKEESKLSKLQQQLEQL 93 (258)
T ss_pred HHHHHHHHHHHHHHHHHHccC----------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344556666666666666332 23444455555555555555555555555555
No 12
>PRK11637 AmiB activator; Provisional
Probab=60.94 E-value=2.7e+02 Score=30.95 Aligned_cols=133 Identities=8% Similarity=0.046 Sum_probs=59.4
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHHHHHhhcccchHH
Q 007223 268 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDL 347 (612)
Q Consensus 268 EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~~~lp~l 347 (612)
++..++.-..-.+.+.-.+..+......-+..+..+.... ..++..+..+|..++.+|..++.+++..... +-..
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~----~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~-l~~r 129 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRET----QNTLNQLNKQIDELNASIAKLEQQQAAQERL-LAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4444444344344444444444444444444443333211 1223455666666666666666666554332 4444
Q ss_pred HHHhhchhccc---cccchhhH-HHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007223 348 CWELAQLQDTY---ILQGDYDL-KVMR----QELYISRQKAFINHLINQLARHQFLRLACHLEKRN 405 (612)
Q Consensus 348 ~~e~AqL~~~p---Il~GD~dL-qiaR----Q~yy~srQ~~vin~Li~Q~Ar~elL~la~e~E~r~ 405 (612)
++...+.-+.+ +|-+..+. .+.| -.|+......+++.+..++....=..-.++.++..
T Consensus 130 lra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~ 195 (428)
T PRK11637 130 LDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQ 195 (428)
T ss_pred HHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444422222 34444322 1222 23344445556666666555554333333333333
No 13
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.64 E-value=3.7e+02 Score=32.44 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHHHhhhcCChhhhhhhhhhhhccCCchHHHHHHHHHHHHHhh
Q 007223 555 VAVEEVTLEHCKKNEIIKHHSQEVGLQRRVFVDFFCNPERLRSQVRELTARVRA 608 (612)
Q Consensus 555 ~~~~dv~~~~~~Kr~~L~~~~~~~~~eR~lyV~Ff~~p~~L~~~V~~Le~~~~a 608 (612)
..|.|.+..+++.-|.|+-+..+..-=|-+|-- ==+-.--+|.+|..|..|
T Consensus 636 ~~v~etm~kLRnELK~LKEDAATFsSlRamFa~---RCdEYvtQldemqrqL~a 686 (717)
T PF09730_consen 636 AMVSETMMKLRNELKALKEDAATFSSLRAMFAA---RCDEYVTQLDEMQRQLAA 686 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456677777777778888765555555555543 223355667777777665
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=58.31 E-value=5.9e+02 Score=34.01 Aligned_cols=143 Identities=18% Similarity=0.220 Sum_probs=72.6
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHHHHHhhcccchH
Q 007223 267 SELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPD 346 (612)
Q Consensus 267 ~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~~~lp~ 346 (612)
.++.+|...|+-++-+|-..+..-.+..+.+.-.....+.+.-..-.-...+-.+|.+|..+.+.|..+|+.+-.. +|.
T Consensus 1060 q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~-~~~ 1138 (1822)
T KOG4674|consen 1060 QKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQ-SAV 1138 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhh
Confidence 3566666666666666655555555555444433222221211111112344455556666666666665555221 111
Q ss_pred HHHHhhchhccccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q 007223 347 LCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSA 426 (612)
Q Consensus 347 l~~e~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~vin~Li~Q~Ar~elL~la~e~E~r~~~~~~~lL~~l~~eL~~~~~~ 426 (612)
+.++-...||=|| -+---|+.|=+.+++- ++ =.+..|....+.-+..+..-+.+|++++++
T Consensus 1139 -------~n~S~~~~g~sdL--~~iv~~LR~Ekei~~t------k~----~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~ 1199 (1822)
T KOG4674|consen 1139 -------SNLSAMLLGLSDL--QNIVSFLRKEKEIAET------KL----DTLKRENARLKQQVASLNRTIDDLQRSLTA 1199 (1822)
T ss_pred -------ccccccccchHHH--HHHHHHHHhHHHHHhh------hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445553333 2334445444444432 22 234567778888888888888888877766
Q ss_pred HHH
Q 007223 427 TKS 429 (612)
Q Consensus 427 ~~~ 429 (612)
-+-
T Consensus 1200 ~r~ 1202 (1822)
T KOG4674|consen 1200 ERA 1202 (1822)
T ss_pred HHH
Confidence 543
No 15
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=54.67 E-value=75 Score=34.18 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
.+++++++.+.+.+.+++..+++....+..++..|+.....+.
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666555554
No 16
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=52.51 E-value=1e+02 Score=30.31 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=32.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH
Q 007223 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTA 135 (612)
Q Consensus 97 ~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~ 135 (612)
..|++-|.|+.++-++++||.+|.+-+..+..+..+|..
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKr 64 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKR 64 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456788999999999999999999999988886666654
No 17
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.35 E-value=1.1e+02 Score=28.66 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRI 179 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~l 179 (612)
.++.+...+..++-|+..++.++..+...++.+..-...+.... ....+....+......+...+.+-++.|+-+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~----e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN----EELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888889999999999999999888888887666655222 2224444555555556666666666666544
No 18
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=51.07 E-value=3.7e+02 Score=29.56 Aligned_cols=114 Identities=18% Similarity=0.327 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhc-CccchhhhHHHHHHHHHHHHHhhhccCCCCCCccCChhhhHHHHHHHHHH-----
Q 007223 477 PGIVQQISGLRADLTALQSDLENS-LPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKIN----- 550 (612)
Q Consensus 477 ~~L~~~~~~L~~~l~~lq~~L~~~-~~e~~~~~~~~L~~~~~~l~q~~~~~s~~~q~~Lt~~el~~~l~~le~~~----- 550 (612)
+++......|..++..+...-... .......-|++||..+..++.+ .=.=|.+.+-|-.|..++
T Consensus 264 d~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~----------~~~lP~lv~RL~tL~~lH~~a~~ 333 (388)
T PF04912_consen 264 DSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPY----------APSLPSLVERLKTLKSLHEEAAE 333 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHHHH
Confidence 566667777777776655333322 1112235578888887777765 111244444444444443
Q ss_pred -----HHHHHHHHHHHHHHHhHHHhhhcCChhhhhhhhhhhhccCCchHHHHHHHHHHHHHhhhc
Q 007223 551 -----AKLSVAVEEVTLEHCKKNEIIKHHSQEVGLQRRVFVDFFCNPERLRSQVRELTARVRALQ 610 (612)
Q Consensus 551 -----~~L~~~~~dv~~~~~~Kr~~L~~~~~~~~~eR~lyV~Ff~~p~~L~~~V~~Le~~~~a~~ 610 (612)
..|.....++...++.=...|.. +|.. |=.|-+.+.+.|+.|+.|+.+||
T Consensus 334 ~~~~l~~le~~q~~l~~~l~~~~~~L~~------ve~~----~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 334 FSQTLSELESQQSDLQSQLKKWEELLNK------VEEK----FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHHHHHHhccC
Confidence 34555555555555454455543 2222 77888999999999999999875
No 19
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.98 E-value=1.4e+02 Score=32.18 Aligned_cols=44 Identities=20% Similarity=0.355 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhh
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~ 142 (612)
.+.++++.++++.|+.|...+.+.+..+......+......+..
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666667777666666666666666666665555443
No 20
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=50.97 E-value=1.3e+02 Score=33.63 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=57.1
Q ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhh
Q 007223 93 EAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNL 170 (612)
Q Consensus 93 e~~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~ 170 (612)
+++| .++||...++.++.|+...+..|......+++...-..+..+..........++++.+.+++..+.....
T Consensus 71 ~gVf----qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~ 144 (499)
T COG4372 71 SGVF----QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTK 144 (499)
T ss_pred hhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677 8899999999999999999999999999999887777676666555555556777777776665554444
No 21
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=50.65 E-value=3.6e+02 Score=29.17 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=101.0
Q ss_pred cchhhhhHhhHHHHHH-------hHHHHHHHhhcccchHHHHHhhchhccccccchh--hHHHHhHHHH---------HH
Q 007223 315 FHSLKRKHVELVGELS-------NLHHKEEKLLSETIPDLCWELAQLQDTYILQGDY--DLKVMRQELY---------IS 376 (612)
Q Consensus 315 ~~~L~~ki~~l~~el~-------~L~~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~--dLqiaRQ~yy---------~s 376 (612)
++.|.+....|++++. .|+.+|+.+.+. |.+++.+.-+-.++ +.|. .++-+|-+|+ +|
T Consensus 65 Ln~L~aENt~L~SkLe~EKq~kerLEtEiES~rsR-LaaAi~d~dqsq~s---krdlelafqr~rdEw~~lqdkmn~d~S 140 (305)
T PF14915_consen 65 LNVLKAENTMLNSKLEKEKQNKERLETEIESYRSR-LAAAIQDHDQSQTS---KRDLELAFQRARDEWVRLQDKMNSDVS 140 (305)
T ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHhh---HHHHHHHHHHHhhHHHHHHHHhcchHH
Confidence 4567777777777763 355666666554 55566554443222 2333 6677777766 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhccccCCCCCcchhh
Q 007223 377 RQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTF 456 (612)
Q Consensus 377 rQ~~vin~Li~Q~Ar~elL~la~e~E~r~~~~~~~lL~~l~~eL~~~~~~~~~R~~~~~~~~q~~~~~~~~~~Id~rD~~ 456 (612)
....--..|-.|++.-+-=-=++++|+|+-+++.+-=.-+...++..++.++.++.-+...-|
T Consensus 141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~q----------------- 203 (305)
T PF14915_consen 141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQ----------------- 203 (305)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 333334566777777777777889999999998886555555566666666666543222211
Q ss_pred HHHHHHHhccccCccccc-ChhhHHHHHHHHHHHHHHHHHhhhhcCcc
Q 007223 457 LHGVRDLLNAQAGLSTYV-SAPGIVQQISGLRADLTALQSDLENSLPG 503 (612)
Q Consensus 457 ~~rL~~lL~~q~~~~~y~-s~~~L~~~~~~L~~~l~~lq~~L~~~~~e 503 (612)
+.++.+..|+ -.+.+++...+|+.+-..|+.+|+.+...
T Consensus 204 --------ne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 204 --------NEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233333 45789999999999999999999977553
No 22
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=49.50 E-value=1.8e+02 Score=27.68 Aligned_cols=86 Identities=14% Similarity=0.289 Sum_probs=51.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHH---HHhhhhhhhchhhcchhhhhhhhhhhhH
Q 007223 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRA---RVAATSTVNGHLSILDDGLSARNLQMND 174 (612)
Q Consensus 98 ~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~---l~~~~e~~~~~L~~~~~~l~~~n~~~n~ 174 (612)
++..+++++......+.+|..|++....+..++++++..........-. ..+.-+..++.+..+.+.|.....++..
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3556777778888888888888888888888888877765554422211 1111234445554455555555555555
Q ss_pred HHHHHHHHH
Q 007223 175 VLGRIASTA 183 (612)
Q Consensus 175 ~L~~l~~~v 183 (612)
...+|..+-
T Consensus 99 ~~ekl~e~d 107 (143)
T PF12718_consen 99 TTEKLREAD 107 (143)
T ss_pred HHHHHHHHH
Confidence 555554443
No 23
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.88 E-value=4.4e+02 Score=30.86 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHHHHHhhc
Q 007223 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 341 (612)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~ 341 (612)
.+.|+..|.+|.-=|.++=-.++.-..+.. +-|.-|.....+.. -...+...+..+.......|+..+++...=+.
T Consensus 302 ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~---~el~~L~~~~~~~~-~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~ 377 (557)
T COG0497 302 VEERLFALKSLARKYGVTIEDLLEYLDKIK---EELAQLDNSEESLE-ALEKEVKKLKAELLEAAEALSAIRKKAAKELE 377 (557)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888776655554433322 22222221111110 00111234444445555555666655554444
Q ss_pred ccch
Q 007223 342 ETIP 345 (612)
Q Consensus 342 ~~lp 345 (612)
..|-
T Consensus 378 ~~v~ 381 (557)
T COG0497 378 KEVT 381 (557)
T ss_pred HHHH
Confidence 4333
No 24
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=48.44 E-value=7e+02 Score=31.96 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=52.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHH
Q 007223 98 SEEGLKDIREATQAYRDEAAQLQ-RQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVL 176 (612)
Q Consensus 98 ~ee~le~l~~~~e~L~~e~~~lq-k~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L 176 (612)
.++..+.|++..+.++.+..+++ +++..++++.+..+.+++......+.+.+.-......| +.+...|..++..+
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eel----e~~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEEL----EDAQKKNDNAADSL 538 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34456667777778878888888 47777778777777666555544433333333333333 33455666666666
Q ss_pred HHHHHHHHHHh
Q 007223 177 GRIASTAQELA 187 (612)
Q Consensus 177 ~~l~~~v~~L~ 187 (612)
+++...-++|-
T Consensus 539 ~kv~~~rk~le 549 (1317)
T KOG0612|consen 539 EKVNSLRKQLE 549 (1317)
T ss_pred hhHHHHHHHHH
Confidence 66666655553
No 25
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=45.87 E-value=1.1e+02 Score=28.85 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 007223 381 FINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLAL 437 (612)
Q Consensus 381 vin~Li~Q~Ar~elL~la~e~E~r~~~~~~~lL~~l~~eL~~~~~~~~~R~~~~~~~ 437 (612)
|+++|=.+++|||-=+.+-++|+..|+.--..|+.=...++.-...+..|+.||--.
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999988888888889999999986655
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.48 E-value=95 Score=26.48 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=36.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhh
Q 007223 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT 151 (612)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~ 151 (612)
.++|.|++.-..|..|+++++.....+...-+-|...-+..+.+.|.++++.
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3677777777778888888887777777666666666666666666666544
No 27
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=41.22 E-value=1e+03 Score=31.89 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQC 128 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~ 128 (612)
.+-++.|++.++.|+.++.+|..+...++.
T Consensus 688 ~ekle~L~~~ie~~K~e~~tL~er~~~l~~ 717 (1822)
T KOG4674|consen 688 KEKLENLEKNLELTKEEVETLEERNKNLQS 717 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777766655444
No 28
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.94 E-value=3.8e+02 Score=31.06 Aligned_cols=71 Identities=28% Similarity=0.226 Sum_probs=46.9
Q ss_pred chhhhhHhhHHHHHHhHHHHHHHhhcccchHHHHHhhchhccccccchh-------hHHHHhHH-------HHHHHHHHH
Q 007223 316 HSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDY-------DLKVMRQE-------LYISRQKAF 381 (612)
Q Consensus 316 ~~L~~ki~~l~~el~~L~~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~-------dLqiaRQ~-------yy~srQ~~v 381 (612)
+.|+.|...+.+|.-.|+.+...|+.+++..-.|+. ++-||| +-|+++-. --.+||-+=
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq-------~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee 234 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQ-------QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEE 234 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666668888888888888999999988888886 444554 22333220 113455556
Q ss_pred HHHHHHHHHHHH
Q 007223 382 INHLINQLARHQ 393 (612)
Q Consensus 382 in~Li~Q~Ar~e 393 (612)
+.+|+.|++..+
T Consensus 235 ~skLlsql~d~q 246 (596)
T KOG4360|consen 235 NSKLLSQLVDLQ 246 (596)
T ss_pred HHHHHHHHHhhH
Confidence 777888877654
No 29
>PRK10869 recombination and repair protein; Provisional
Probab=38.63 E-value=4.9e+02 Score=30.27 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 007223 262 HHQRVSELQRLRSVFGTSERQWVEAQVENA 291 (612)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~ 291 (612)
.+.|...+.+|+.=|+.+--+++.-..+..
T Consensus 301 ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~ 330 (553)
T PRK10869 301 LEQRLSKQISLARKHHVSPEELPQHHQQLL 330 (553)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 477888999999999987777765555443
No 30
>PRK14127 cell division protein GpsB; Provisional
Probab=38.30 E-value=1.5e+02 Score=27.31 Aligned_cols=49 Identities=33% Similarity=0.448 Sum_probs=38.1
Q ss_pred CCCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHH
Q 007223 88 RRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHAST 139 (612)
Q Consensus 88 ~~~~~e~~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~ 139 (612)
.+++.++| .+=|..+-.++++|.+++..|+.+...+..++..++...+.
T Consensus 21 RGYd~~EV---D~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 21 RGYDQDEV---DKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46777766 35677777788899999999999999888888888776543
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.11 E-value=1.7e+02 Score=31.41 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~l~ 180 (612)
.++.++.++.++..++..+++.+..++.++..++.....+......+.++..++.+. +.....-....+..|.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~-------~~~~r~~t~~Ev~~Lk 282 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI-------REECRGWTRSEVKRLK 282 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCCCHHHHHHHH
Confidence 455555555555555555555555555555555554444443322222222333322 2222222444556666
Q ss_pred HHHHHH
Q 007223 181 STAQEL 186 (612)
Q Consensus 181 ~~v~~L 186 (612)
+.+..|
T Consensus 283 ~~~~~L 288 (325)
T PF08317_consen 283 AKVDAL 288 (325)
T ss_pred HHHHHH
Confidence 665555
No 32
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.19 E-value=3.1e+02 Score=27.74 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHHHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~~l~ 180 (612)
+++.+++.-.+|..++.+|.++..++++-+....+....+. +.|......++.++.|-.--..+...|-.+-+.++.|.
T Consensus 30 ~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEle-dLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 30 SVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELE-DLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 007223 181 STAQEL 186 (612)
Q Consensus 181 ~~v~~L 186 (612)
....++
T Consensus 109 een~kl 114 (193)
T PF14662_consen 109 EENGKL 114 (193)
T ss_pred HHHhHH
No 33
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=36.80 E-value=3.3e+02 Score=26.63 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=14.0
Q ss_pred ChhhHHHHHHhcCCCCC
Q 007223 2 SGARLCALLCELGYGGA 18 (612)
Q Consensus 2 ~g~~f~e~L~~lGyp~a 18 (612)
|--.|+..|.+-|||..
T Consensus 3 DT~~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 3 DTHKFVKRLEAAGFTEE 19 (177)
T ss_pred cHHHHHHHHHHCCCCHH
Confidence 34579999999999987
No 34
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.57 E-value=3.1e+02 Score=27.32 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=8.9
Q ss_pred HHHHHHHhhcc
Q 007223 217 ELNQWFSKQLD 227 (612)
Q Consensus 217 ~Lt~y~kKqF~ 227 (612)
.|..|++++|.
T Consensus 160 ~l~~~~~~k~~ 170 (188)
T PF03962_consen 160 SLKSYLKKKFG 170 (188)
T ss_pred HHHHHHHHhcC
Confidence 68889988874
No 35
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.40 E-value=2.6e+02 Score=28.22 Aligned_cols=9 Identities=22% Similarity=0.339 Sum_probs=3.8
Q ss_pred hhhhhhhhh
Q 007223 162 DDGLSARNL 170 (612)
Q Consensus 162 ~~~l~~~n~ 170 (612)
+.+..-.|.
T Consensus 138 qQk~~~kn~ 146 (201)
T PF13851_consen 138 QQKTGLKNL 146 (201)
T ss_pred HHHHHHHHH
Confidence 334444444
No 36
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.23 E-value=3.1e+02 Score=27.92 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007223 108 ATQAYRDEAAQLQRQLRHLQC 128 (612)
Q Consensus 108 ~~e~L~~e~~~lqk~~~~l~~ 128 (612)
.+.+++.++.+++..++.+..
T Consensus 94 rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554444443
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=32.13 E-value=1.5e+03 Score=30.91 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=55.5
Q ss_pred HHHHHhhcccchHHHHHhhchhcccc-ccchh-hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007223 334 HKEEKLLSETIPDLCWELAQLQDTYI-LQGDY-DLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYS 411 (612)
Q Consensus 334 ~~i~~l~~~~lp~l~~e~AqL~~~pI-l~GD~-dLqiaRQ~yy~srQ~~vin~Li~Q~Ar~elL~la~e~E~r~~~~~~~ 411 (612)
..|+.+.+ .+|+--+.-+.....+= +.||. +|.+ .-+.--.+...+..+|-+..+-..=++.-++-..+...+++.
T Consensus 1583 ~~i~~~q~-~Le~E~r~k~e~~r~KKkle~di~elE~-~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~ 1660 (1930)
T KOG0161|consen 1583 RQLESLQA-ELEAETRSKSEALRSKKKLEGDINELEI-QLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLE 1660 (1930)
T ss_pred HHHHHHHH-hhhHHHHHHHHHHhhhhhhhcchHHHHH-HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445544 46655554444444333 56665 3332 223333344556666666666666667777777777777777
Q ss_pred HHHHHHHHHHhhHHHHHHHHhh
Q 007223 412 LLKVIESELQGYLSATKSRVGR 433 (612)
Q Consensus 412 lL~~l~~eL~~~~~~~~~R~~~ 433 (612)
++...+..+..-.+...+.-..
T Consensus 1661 q~~~aerr~~~l~~E~eeL~~~ 1682 (1930)
T KOG0161|consen 1661 QLAEAERRLAALQAELEELREK 1682 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666555555544443
No 38
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=32.01 E-value=5.4e+02 Score=25.86 Aligned_cols=50 Identities=28% Similarity=0.364 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHHHHHh
Q 007223 279 SERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKL 339 (612)
Q Consensus 279 aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l 339 (612)
+...|-.+.....+..+.+.-+... ++ +-..|+..+..+|..++..++..
T Consensus 113 ~~~~~~~~~~~L~k~~~~~~Kl~~~--~~---------s~~~K~~~~~~ei~~~e~~~~~a 162 (216)
T cd07627 113 LWQYWQSAESELSKKKAQLEKLKRQ--GK---------TQQEKLNSLLSELEEAERRASEL 162 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--CC---------ChHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555421 11 23567778888888777766644
No 39
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=31.15 E-value=21 Score=33.60 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.8
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccCCC
Q 007223 3 GARLCALLCELGYGGADSLDPDSFEWPFQY 32 (612)
Q Consensus 3 g~~f~e~L~~lGyp~a~~L~~e~fdWlf~~ 32 (612)
..+|++.=..||||++ +.-+||||.-
T Consensus 29 Ar~FFdLQDmLGfDKa----SKTveWLL~k 54 (138)
T PF03634_consen 29 ARKFFDLQDMLGFDKA----SKTVEWLLTK 54 (138)
T ss_pred HHHHHHHHHHhcCCCC----CchHHHHHHh
Confidence 4689999999999999 7889999954
No 40
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.75 E-value=1.5e+02 Score=27.75 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHH
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHAS 138 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as 138 (612)
++.+++|++..+.|+..+.+|+++-..+..++.+|+....
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888999999999999999999998888887643
No 41
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.94 E-value=2.7e+02 Score=26.83 Aligned_cols=56 Identities=30% Similarity=0.314 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHHHHHhhcccch
Q 007223 281 RQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIP 345 (612)
Q Consensus 281 ~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~~~lp 345 (612)
-++...+.+.+...+-|..|...++ .+.|...|..+..++..++..++.+.+..-|
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t---------~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPT---------NEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6677777888888888888876654 3478999999999999999999988776433
No 42
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.88 E-value=4.4e+02 Score=24.78 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=11.2
Q ss_pred HHHHhcCCCCCCCCCC
Q 007223 8 ALLCELGYGGADSLDP 23 (612)
Q Consensus 8 e~L~~lGyp~a~~L~~ 23 (612)
.+|-..|||....+.+
T Consensus 9 ~~L~s~G~~~~~~~~~ 24 (151)
T PF11559_consen 9 QQLLSRGYPSDGLLFD 24 (151)
T ss_pred HHHHHCCCCCCCccCc
Confidence 5677889999744443
No 43
>cd08776 DED_Caspase-like_repeat1 Death effector domain, repeat 1, of initator caspase-like proteins. Death Effector Domain (DED), first repeat, found in initator caspase-like proteins, like caspase-8 and -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DI
Probab=29.11 E-value=78 Score=26.92 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=39.6
Q ss_pred chhHHHHHHccCCCCCCCCHHHHhHHHHHHhcccCCChhhHHHHHhhccccc
Q 007223 35 ARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFS 86 (612)
Q Consensus 35 ~~~FL~Wfc~nV~~~NVLS~~EL~~f~~L~~sGkiLeg~~Ld~al~~i~~~~ 86 (612)
...-++|+|..+=|.+.+.. =...|..|+..|++ +-.-|.|.|-.|...+
T Consensus 16 e~~~lkFLC~d~ip~~~le~-~~~lf~~L~e~~~L-~~~fL~ElL~~I~R~D 65 (71)
T cd08776 16 EREVLLFLLNVFIPQPTLAQ-LIGALRALKEEGRL-TLPLLAECLYRAGRRD 65 (71)
T ss_pred HHHHHHHHcccccccccchh-HHHHHHHHHHcCCC-CHHHHHHHHHHhCHHH
Confidence 34568999999888887765 56679999999998 4467888888888644
No 44
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.07 E-value=4.4e+02 Score=28.90 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhh
Q 007223 410 YSLLKVIESELQGYLSATKSRVGRCLALIEAA 441 (612)
Q Consensus 410 ~~lL~~l~~eL~~~~~~~~~R~~~~~~~~q~~ 441 (612)
+...-.+++-|+.+-+ .+|+-++.++....
T Consensus 216 f~~~~~~vq~lQ~~YQ--~~~Ly~l~AlG~~~ 245 (330)
T PF07851_consen 216 FSLYQSVVQFLQYRYQ--RGCLYRLRALGKRH 245 (330)
T ss_pred HHHHHHHHHHHHHHHH--HhHHHHHHHhccCc
Confidence 4555667777776554 36777777776544
No 45
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.95 E-value=3e+02 Score=30.24 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH
Q 007223 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHA 137 (612)
Q Consensus 104 ~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~a 137 (612)
+|.....+|+.++.+|+++...++...+-|..+.
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444566666666666666666666555555543
No 46
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.95 E-value=9.3e+02 Score=27.85 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHH
Q 007223 262 HHQRVSELQRLRSVFGTSERQWVEAQVEN 290 (612)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~ 290 (612)
.+.|+..+.+|..-|..+--+++.-..+.
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l 334 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKI 334 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 46777788888888887666665544443
No 47
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.92 E-value=3.9e+02 Score=27.11 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHHHHhhcccCCCCccceec------cCChhhhhhchhhHHHHHHHHHhhccCCc
Q 007223 170 LQMNDVLGRIASTAQELAHYHSGDEDGIYLAY------SDFHPYLLGDSSSMKELNQWFSKQLDSGP 230 (612)
Q Consensus 170 ~~~n~~L~~l~~~v~~L~~~~s~~~~gvflsq------~~le~Yl~~ee~~t~~Lt~y~kKqF~~G~ 230 (612)
.-+...|++++...+++..|+. +++.| .||.+|...+-.-.+. .||+|....
T Consensus 57 e~i~~~l~kF~~~l~ei~~~~~-----~L~~q~~~~l~~~L~~F~k~dl~~vke----~kk~FdK~s 114 (200)
T cd07638 57 AVIETSLTKFSDTLQEMINYHT-----ILFDQAQRSIKAQLQTFVKEDLRKFKD----AKKQFDKVS 114 (200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHh
Confidence 3677888999999999988865 33332 2555555444433333 246666543
No 48
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.79 E-value=36 Score=31.06 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=30.0
Q ss_pred CCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 89 RDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 89 ~~~~e~~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
+++.++| ..-|+.+..+++.|..++..|+.+...+..++..+......+.
T Consensus 17 GYd~~eV---D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 17 GYDPDEV---DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp EEEHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred CcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 6677666 3577788888888888888888888888777777765544444
No 49
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.28 E-value=5.4e+02 Score=25.89 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhh---hhhhhhHHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSA---RNLQMNDVLG 177 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~---~n~~~n~~L~ 177 (612)
.+.++...++.+..|...|++.-.....-+++++...+.+.+-......+.-.....|+..++.... ...+.+..|.
T Consensus 20 ~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888889999888888877777788877777777654444444445556666666654333 3334455555
Q ss_pred HHHHHHHHH
Q 007223 178 RIASTAQEL 186 (612)
Q Consensus 178 ~l~~~v~~L 186 (612)
.+.+.++.|
T Consensus 100 k~~~~l~~L 108 (194)
T PF15619_consen 100 KTKDELKHL 108 (194)
T ss_pred HHHHHHHHH
Confidence 555555444
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.35 E-value=5.8e+02 Score=26.71 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=33.3
Q ss_pred chhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHh
Q 007223 91 DQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (612)
Q Consensus 91 ~~e~~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l 140 (612)
-+++.......++.+.+.+.+++.++.++++++..++..+.++.......
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555667777777777778888888887777777666655544333
No 51
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.89 E-value=3.6e+02 Score=24.85 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhh
Q 007223 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT 151 (612)
Q Consensus 108 ~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~ 151 (612)
+++.++.....|.+++.-|....+.|+.+..+..+....+.+..
T Consensus 24 slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 24 SLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444433333
No 52
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=25.56 E-value=19 Score=34.82 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=23.5
Q ss_pred hHHHHHHhcCCCCCCCCCCCCCcccC--CC----CCchhHHHHHHccC
Q 007223 5 RLCALLCELGYGGADSLDPDSFEWPF--QY----DDARPILDWICSSL 46 (612)
Q Consensus 5 ~f~e~L~~lGyp~a~~L~~e~fdWlf--~~----~e~~~FL~Wfc~nV 46 (612)
++..+||.||||.+ +++.. ||. .. |..-..|.|+|.-+
T Consensus 96 ev~~~lK~L~YP~~-~isKS---~L~a~gs~hsWP~lL~~L~WLv~l~ 139 (157)
T PF03801_consen 96 EVPFLLKALGYPFA-TISKS---SLQAPGSPHSWPHLLGALHWLVELI 139 (157)
T ss_dssp HHHHHHHHTT-SS-----HH---HHHSTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc-ccCHH---HccCCCCcccHHHHHHHHHHHHHHH
Confidence 67889999999996 66543 333 11 45778999999743
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.60 E-value=4.3e+02 Score=26.89 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLR 124 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~ 124 (612)
-+..++.++.++++++..+....+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 556666666666666666655544
No 54
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.37 E-value=3.3e+02 Score=23.79 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
++|.|++.-..|..+++.+...+..|...-..|+..-+.++
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333433333333
No 55
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.29 E-value=6e+02 Score=23.88 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
..|.+......+..++..++.....+..++..++.......
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555554444444333
No 56
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.77 E-value=2.2e+02 Score=29.25 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=33.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHh
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVA 149 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~ 149 (612)
++...++.++++.|+++++..++.+.+.+.+...|..++..++.....+.+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLle 200 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLE 200 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 334455566677777777777777777777777777777666655444443
No 57
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=3.3e+02 Score=28.89 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 108 ~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
.+..+..+...+++.+..|..+.++++.....+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~ 72 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ 72 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555443333
No 58
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.47 E-value=68 Score=25.16 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHhhhcc
Q 007223 593 ERLRSQVRELTARVRALQV 611 (612)
Q Consensus 593 ~~L~~~V~~Le~~~~a~~~ 611 (612)
+-|+.+|+.|+.|++.||.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999874
No 59
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=23.29 E-value=7.9e+02 Score=24.90 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=64.2
Q ss_pred ccchHHHHHhhchhccccccchhhHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007223 342 ETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQ----LARHQFLRLACHLEKRNMLAAYSLLKVIE 417 (612)
Q Consensus 342 ~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~vin~Li~Q----~Ar~elL~la~e~E~r~~~~~~~lL~~l~ 417 (612)
.++-++-++....-+.+-...-|.-.++-.+-.+..|+..=..++.| -.||.-+-.=++-|.|+|.+....=..++
T Consensus 57 dp~~ALqRD~~~~~~~~~~~~v~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t 136 (192)
T PF09727_consen 57 DPFLALQRDSEAAGGEKEEEDVYENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFT 136 (192)
T ss_pred cHHHHHHhHHHhcCCCCccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 34444555444433333333337777888888888887765555555 56777777778889999998888888888
Q ss_pred HHHHhhHHHHHHHHhh
Q 007223 418 SELQGYLSATKSRVGR 433 (612)
Q Consensus 418 ~eL~~~~~~~~~R~~~ 433 (612)
.-|++....+.+-++.
T Consensus 137 ~lLEkEReRLkq~lE~ 152 (192)
T PF09727_consen 137 NLLEKERERLKQQLEQ 152 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888877764
No 60
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=22.41 E-value=7.5e+02 Score=25.26 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHhhccc
Q 007223 172 MNDVLGRIASTAQELAHYHS 191 (612)
Q Consensus 172 ~n~~L~~l~~~v~~L~~~~s 191 (612)
+...|++++...+++..|+.
T Consensus 65 i~~~L~kF~~~l~ei~~~r~ 84 (207)
T cd07602 65 IAESLKEFGRLIETVEDERD 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55778888888888887765
No 61
>PRK09039 hypothetical protein; Validated
Probab=22.32 E-value=5.5e+02 Score=27.97 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
.+..+..++...+.+..+...+...|..++..|..+...+.
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666666665544444
No 62
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.32 E-value=6.9e+02 Score=26.15 Aligned_cols=62 Identities=11% Similarity=-0.002 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 007223 377 RQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALI 438 (612)
Q Consensus 377 rQ~~vin~Li~Q~Ar~elL~la~e~E~r~~~~~~~lL~~l~~eL~~~~~~~~~R~~~~~~~~ 438 (612)
--.-++.-+..|+=||.-=-.-+|-|+++.......|..=+..|+..+..+-.|+-.+....
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 44668999999999999999999999999999999999999999999999999998766554
No 63
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.09 E-value=3.9e+02 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.362 Sum_probs=13.1
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 007223 100 EGLK-DIREATQAYRDEAAQLQRQLRHLQ 127 (612)
Q Consensus 100 e~le-~l~~~~e~L~~e~~~lqk~~~~l~ 127 (612)
+.++ +++..+..+...+..+....+...
T Consensus 98 ~~L~~el~~~l~~~~~~~~~~~~~~~~~~ 126 (204)
T PF04740_consen 98 DFLESELKKKLNQLKEQIEDLQDEINSIL 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444 554445555554444444444333
No 64
>PF15456 Uds1: Up-regulated During Septation
Probab=21.71 E-value=6.4e+02 Score=23.64 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=43.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhHHHH
Q 007223 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLG 177 (612)
Q Consensus 98 ~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~~L~ 177 (612)
..+++++|++++..|...+..+++.+.....-++-...+......+.+. -........+.++.+...+.+++..-.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~----~~~~~~~~~~~eeel~~~~rk~ee~~~ 95 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRR----ARFSRESSLKAEEELAESDRKCEELAQ 95 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc----cCCCcchHHHHHHHHHHHHhhHHHHHH
Confidence 3457788888888888888888888875555555443333222211110 011112333444555555555544444
Q ss_pred HHHHHHH
Q 007223 178 RIASTAQ 184 (612)
Q Consensus 178 ~l~~~v~ 184 (612)
+|-..-.
T Consensus 96 eL~~le~ 102 (124)
T PF15456_consen 96 ELWKLEN 102 (124)
T ss_pred HHHHHHH
Confidence 4444333
No 65
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.69 E-value=1e+03 Score=25.56 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=48.9
Q ss_pred chhhhhHhhHHHHHHhHHHHHHHhhcccchHHHHHhhchhccccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007223 316 HSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFL 395 (612)
Q Consensus 316 ~~L~~ki~~l~~el~~L~~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~vin~Li~Q~Ar~elL 395 (612)
.-|...|.+.+.-+..++.++ ... -|++++++.. +-.+ +...+. .-|.++
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~---~~~-nPpLf~EY~~----------------------a~~d-~r~~m~---~q~~~v 127 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEET---YES-NPPLFREYYT----------------------ADPD-MRLLMD---NQFQLV 127 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhc-CCHHHHHHHc----------------------CCHH-HHHHHH---HHHHHH
Confidence 357777777777777776654 233 3889887633 2111 111111 124667
Q ss_pred HHHHHHHHHhHHHHHH--HHHHHHHHHHhhHHHHHHHHhh
Q 007223 396 RLACHLEKRNMLAAYS--LLKVIESELQGYLSATKSRVGR 433 (612)
Q Consensus 396 ~la~e~E~r~~~~~~~--lL~~l~~eL~~~~~~~~~R~~~ 433 (612)
+--+.++-++.|--.| +++.+...|......+..=...
T Consensus 128 K~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~ 167 (325)
T PF08317_consen 128 KTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAK 167 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776665433 4566666665555555544443
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.39 E-value=9.3e+02 Score=27.32 Aligned_cols=87 Identities=22% Similarity=0.161 Sum_probs=50.3
Q ss_pred hhhhhHhhHHHHHHhHHHHHHHhhcccchHHHHHhhchhccccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007223 317 SLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLR 396 (612)
Q Consensus 317 ~L~~ki~~l~~el~~L~~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~vin~Li~Q~Ar~elL~ 396 (612)
.+.++.....-+|..|+.+-.+++.+-+.... -+..++..| .+++-+-+-.-++ |--|-.|+|.|+=-.
T Consensus 45 ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a--~~~~~t~~~-------~~~en~~~r~~~e--ir~~~~q~~e~~n~~ 113 (459)
T KOG0288|consen 45 AIKAKLQEKELELNRLQEENTQLNEERVREEA--TEKTLTVDV-------LIAENLRIRSLNE--IRELREQKAEFENAE 113 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-------HHHHHHHHHHHHH--HHHHHHhhhhhccch
Confidence 34444445555666666666666555433111 111122222 2333222222222 445678999999999
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 007223 397 LACHLEKRNMLAAYSLLK 414 (612)
Q Consensus 397 la~e~E~r~~~~~~~lL~ 414 (612)
++++-++++|+.+-++-+
T Consensus 114 ~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 114 LALREMRRKMRIAERLAE 131 (459)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999999999988776
No 67
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.36 E-value=5.6e+02 Score=22.43 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhh
Q 007223 109 TQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (612)
Q Consensus 109 ~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~ 142 (612)
++.|+.-++.+--+...|+-.+++|...-..+.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665444443
No 68
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.05 E-value=4.4e+02 Score=26.06 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhHHHHHhhcccccCCCCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhh
Q 007223 73 EDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATS 152 (612)
Q Consensus 73 ~~Ld~al~~i~~~~~~~~~~e~~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e 152 (612)
++|.+++++++.......+..+ .++.++..+......+..++.....+..++..+........
T Consensus 81 ~ELael~r~~~el~~~L~~~~~------~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~----------- 143 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELND------ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN----------- 143 (194)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred cccccccccccccccccccccc------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_pred hhhchhhcchhhhhhhhhhhhHHHHHHHHHHHHHh
Q 007223 153 TVNGHLSILDDGLSARNLQMNDVLGRIASTAQELA 187 (612)
Q Consensus 153 ~~~~~L~~~~~~l~~~n~~~n~~L~~l~~~v~~L~ 187 (612)
.....|+.....|...+..+..-+.++..+..+|+
T Consensus 144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 69
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=21.01 E-value=5.5e+02 Score=27.75 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHH
Q 007223 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (612)
Q Consensus 102 le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~ 136 (612)
+-++++++.+..+.+.++++....+...+..++.+
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666555443
No 70
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.98 E-value=6.8e+02 Score=26.95 Aligned_cols=47 Identities=28% Similarity=0.291 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHHHHHhhcc
Q 007223 263 HQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSE 342 (612)
Q Consensus 263 e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~~ 342 (612)
+-|. .|+|+|--||--+.-.++|+-..+ +.++||..|++=|+.+.+.
T Consensus 93 eLks-QL~RMrEDWIEEECHRVEAQLALK--------------------------------EARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 93 ELKS-QLARMREDWIEEECHRVEAQLALK--------------------------------EARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHhh
Confidence 3344 677777666666666666554321 5667888899888888665
No 71
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.92 E-value=5.4e+02 Score=23.34 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 104 ~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
.+....+.|..++..++.++..+...+..+......+.
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777777777666655554
No 72
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.79 E-value=7.4e+02 Score=24.90 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHhhcccCC-CCccceeccCChhhhhhchhhHHHHHHHHHhhccCC
Q 007223 171 QMNDVLGRIASTAQELAHYHSGD-EDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (612)
Q Consensus 171 ~~n~~L~~l~~~v~~L~~~~s~~-~~gvflsq~~le~Yl~~ee~~t~~Lt~y~kKqF~~G 229 (612)
.+...|.+++.+.+++..|+... .+---+--.||+.|+..+-.-.+.. ||+|+..
T Consensus 58 ~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~----kk~Fdk~ 113 (200)
T cd07603 58 LVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKES----KKHFEKI 113 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHH
Confidence 45677888888888887765411 0001122347888887776655543 3555543
No 73
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.72 E-value=6.4e+02 Score=28.98 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhh
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~ 142 (612)
.+..|...+.+++++++.+.++-..+..+-+.|......+.+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 455566667777777777777777666666666655555543
No 74
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.07 E-value=7e+02 Score=23.09 Aligned_cols=43 Identities=30% Similarity=0.408 Sum_probs=33.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
+..++.+...++.|+.+++.++..+..+...+.++.....++.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777778888888888888888888888888777666655
Done!