Query 007223
Match_columns 612
No_of_seqs 83 out of 85
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 20:19:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8t_A Beclin-1; autophagy, AT 68.7 33 0.0011 29.4 9.6 85 95-179 6-90 (96)
2 2ve7_A Kinetochore protein HEC 65.4 7.1 0.00024 40.4 5.6 37 5-46 72-114 (315)
3 3i5g_C Myosin catalytic light 54.3 12 0.00041 33.8 4.5 77 3-83 30-115 (159)
4 3mq9_A Bone marrow stromal ant 53.9 63 0.0022 34.3 10.8 70 116-186 399-469 (471)
5 3caz_A BAR protein; thermo-aci 44.2 94 0.0032 30.1 8.9 51 164-214 168-222 (294)
6 2jee_A YIIU; FTSZ, septum, coi 38.5 1.7E+02 0.0058 24.4 8.6 26 111-136 10-35 (81)
7 3u1c_A Tropomyosin alpha-1 cha 37.6 1.1E+02 0.0037 26.2 7.6 42 99-140 29-70 (101)
8 3i5g_B Myosin regulatory light 34.9 14 0.00047 33.2 1.5 76 2-83 34-115 (153)
9 2fxo_A Myosin heavy chain, car 33.8 2.5E+02 0.0086 24.8 10.6 36 101-136 21-56 (129)
10 3u59_A Tropomyosin beta chain; 32.6 1.5E+02 0.005 25.3 7.6 43 99-141 29-71 (101)
11 3bas_A Myosin heavy chain, str 31.2 1.7E+02 0.0057 24.4 7.6 36 101-136 22-57 (89)
12 1i84_S Smooth muscle myosin he 29.3 1.4E+02 0.0047 36.1 9.3 17 418-434 1147-1163(1184)
13 2ovk_C Myosin catalytic light 28.2 40 0.0014 29.2 3.4 77 3-83 30-115 (159)
14 2jee_A YIIU; FTSZ, septum, coi 28.2 2E+02 0.007 24.0 7.4 48 101-148 28-75 (81)
15 2yy0_A C-MYC-binding protein; 25.3 1.2E+02 0.0042 23.1 5.2 26 109-134 21-46 (53)
16 3tnu_B Keratin, type II cytosk 24.3 2.4E+02 0.0083 24.8 7.9 64 268-338 37-100 (129)
17 1go4_E MAD1 (mitotic arrest de 24.3 38 0.0013 29.5 2.4 40 314-365 13-52 (100)
18 1wdc_B Scallop myosin; calcium 23.7 37 0.0012 29.3 2.3 75 2-82 36-116 (156)
19 2w83_C C-JUN-amino-terminal ki 23.3 2.9E+02 0.0099 22.8 7.3 46 100-145 9-54 (77)
20 2yy0_A C-MYC-binding protein; 22.9 1.3E+02 0.0043 23.0 4.8 32 101-132 20-51 (53)
21 3hnw_A Uncharacterized protein 22.7 2.7E+02 0.0092 25.2 7.9 30 108-137 76-105 (138)
22 1ic2_A Tropomyosin alpha chain 22.5 2.8E+02 0.0095 22.5 7.3 43 99-141 26-68 (81)
23 2mys_C Myosin; muscle protein, 22.4 63 0.0022 27.1 3.5 76 3-82 27-114 (149)
24 3vmx_A Voltage-gated hydrogen 22.1 1.7E+02 0.0058 22.1 5.2 36 403-438 6-41 (48)
25 2l5g_A GPS2 protein, G protein 21.3 1.5E+02 0.0052 21.2 4.5 29 100-128 8-36 (38)
26 3oja_B Anopheles plasmodium-re 20.5 3.8E+02 0.013 28.9 10.1 15 30-44 392-406 (597)
27 1ggw_A Protein (CDC4P); light 20.0 57 0.002 27.4 2.7 77 2-82 23-105 (140)
No 1
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.66 E-value=33 Score=29.37 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=49.5
Q ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhhhhhhchhhcchhhhhhhhhhhhH
Q 007223 95 VFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMND 174 (612)
Q Consensus 95 ~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~e~~~~~L~~~~~~l~~~n~~~n~ 174 (612)
+...+..+.+++.+-..|-.++..+++....+...+..++..+..+.......-..-..-..++...++.+...+.++..
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777777777777777777777777766666665444333333344444554445555555555544
Q ss_pred HHHHH
Q 007223 175 VLGRI 179 (612)
Q Consensus 175 ~L~~l 179 (612)
...+|
T Consensus 86 ~~~qL 90 (96)
T 3q8t_A 86 AQMQL 90 (96)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 2
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=65.35 E-value=7.1 Score=40.37 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=25.6
Q ss_pred hHHHHHHhcCCCCCCCCCCCCCcccC--CC----CCchhHHHHHHccC
Q 007223 5 RLCALLCELGYGGADSLDPDSFEWPF--QY----DDARPILDWICSSL 46 (612)
Q Consensus 5 ~f~e~L~~lGyp~a~~L~~e~fdWlf--~~----~e~~~FL~Wfc~nV 46 (612)
++..+||.||||-. ++.. ||. .. |.+-..|.|+|.-+
T Consensus 72 ev~~~lK~L~YP~~--isKS---~L~a~g~pHsWp~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 72 EVPRIFKDLGYPFA--LSKS---SMYTVGAPHTWPHIVAALVWLIDCI 114 (315)
T ss_dssp HHHHHHHHTTCSSC--CCHH---HHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCce--eCHH---HhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 57789999999986 4332 332 22 33778899998755
No 3
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=54.34 E-value=12 Score=33.76 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=55.9
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccCC-------CCCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CCChh
Q 007223 3 GARLCALLCELGYGGADSLDPDSFEWPFQ-------YDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGE 73 (612)
Q Consensus 3 g~~f~e~L~~lGyp~a~~L~~e~fdWlf~-------~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~ 73 (612)
-.+|..+|+.||+.-+. +.+.-++. .-++..|+.++.......+.-+.+++ .+|..+-..|. .++.+
T Consensus 30 ~~El~~~lr~lG~~~t~----~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~ 105 (159)
T 3i5g_C 30 AAKVGDLLRCLGMNPTE----AQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCCH----HHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCCH----HHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHH
Confidence 46899999999986541 12222221 12478899999887776666777776 58999988888 78999
Q ss_pred hHHHHHhhcc
Q 007223 74 DLESAFDSIS 83 (612)
Q Consensus 74 ~Ld~al~~i~ 83 (612)
+|-.++.++.
T Consensus 106 el~~~l~~~g 115 (159)
T 3i5g_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 9999988765
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.87 E-value=63 Score=34.26 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHHhhh-hhhhchhhcchhhhhhhhhhhhHHHHHHHHHHHHH
Q 007223 116 AAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT-STVNGHLSILDDGLSARNLQMNDVLGRIASTAQEL 186 (612)
Q Consensus 116 ~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~-e~~~~~L~~~~~~l~~~n~~~n~~L~~l~~~v~~L 186 (612)
...||+++...+..+-.++.+|++-++.+-.+-+.- .++...+++++ .+....++.|..|+.....++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE-ELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344777777777778888888888887666655444 33333444443 48888899999999999888876
No 5
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=44.23 E-value=94 Score=30.06 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=27.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhc-ccCCC---CccceeccCChhhhhhchhh
Q 007223 164 GLSARNLQMNDVLGRIASTAQELAHY-HSGDE---DGIYLAYSDFHPYLLGDSSS 214 (612)
Q Consensus 164 ~l~~~n~~~n~~L~~l~~~v~~L~~~-~s~~~---~gvflsq~~le~Yl~~ee~~ 214 (612)
.|+...-+||++++.--.-..+-++- .|.+- ..+=-.--|+-||+.++++-
T Consensus 168 vcsDiInkMnkll~n~~riineaasavwstqlqyakaleaaanpivpylqqeeqe 222 (294)
T 3caz_A 168 VCADLIQKMETVWKKHVSIFAEAASAVWSTQLQYAKALEAAANPIVPYLQQEEQE 222 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGGCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhh
Confidence 57778888999888766655554321 11000 00112234677888887764
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.49 E-value=1.7e+02 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHH
Q 007223 111 AYRDEAAQLQRQLRHLQCQFDMLTAH 136 (612)
Q Consensus 111 ~L~~e~~~lqk~~~~l~~~~~~L~~~ 136 (612)
+|+..++.+-.+...++-..+.|...
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=37.59 E-value=1.1e+02 Score=26.23 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHh
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l 140 (612)
+..+++.+......+.++..|++....+...++.++......
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677788888888888888888888888776654433
No 8
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=34.87 E-value=14 Score=33.18 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=52.1
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccC----CCCCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007223 2 SGARLCALLCELGYGGADSLDPDSFEWPF----QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (612)
Q Consensus 2 ~g~~f~e~L~~lGyp~a~~L~~e~fdWlf----~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (612)
+-.+|...|+.+|++.+.. .+.-++ ..-++..|+.+++..+...+ +++++ .+|..+-..|. .++.++|
T Consensus 34 ~~~El~~~l~~lg~~~~~~----~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~--~~~~l~~aF~~fD~d~~G~I~~~el 107 (153)
T 3i5g_B 34 GMEDLKDMFSSLGRVPPDD----ELNAMLKECPGQLNFTAFLTLFGEKVSGTD--PEDALRNAFSMFDEDGQGFIPEDYL 107 (153)
T ss_dssp CHHHHHHHHHHTTSCCCHH----HHHHHHHTSSSCCCSHHHHHTTTTTTTTCC--CHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred cHHHHHHHHHHcCCCccHH----HHHHHHHhccCCccHHHHHHHHHhhhcccc--cHHHHHHHHhccccCCCCeEeHHHH
Confidence 3468889999999887632 222222 23457888888887766543 44554 47888888888 7888888
Q ss_pred HHHHhhcc
Q 007223 76 ESAFDSIS 83 (612)
Q Consensus 76 d~al~~i~ 83 (612)
-.++.++.
T Consensus 108 ~~~l~~~g 115 (153)
T 3i5g_B 108 KDLLENMG 115 (153)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHcC
Confidence 88887654
No 9
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.80 E-value=2.5e+02 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~ 136 (612)
.+..++..+.+-+.....+......+....+.|+.+
T Consensus 21 el~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q 56 (129)
T 2fxo_A 21 EFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445444555555555555555555555443
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.56 E-value=1.5e+02 Score=25.27 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=30.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
+..+++.+......+.++..+++....+...++.++.......
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667778888888888888888888777766554443
No 11
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.18 E-value=1.7e+02 Score=24.45 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~ 136 (612)
.++.+++.+++-+....+++.....+....|.|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555555555555554
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=29.28 E-value=1.4e+02 Score=36.13 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHhhh
Q 007223 418 SELQGYLSATKSRVGRC 434 (612)
Q Consensus 418 ~eL~~~~~~~~~R~~~~ 434 (612)
..|......+..+++.+
T Consensus 1147 ~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1147 RDLSEELEALKTELEDT 1163 (1184)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555555443
No 13
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=28.22 E-value=40 Score=29.18 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=48.9
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccCCC-------CCchhHHHHHHccCCCCCCCCHHHHh-HHHHHHhccc-CCChh
Q 007223 3 GARLCALLCELGYGGADSLDPDSFEWPFQY-------DDARPILDWICSSLRPSNVLSLSELS-QFEQFLQEEK-LLEGE 73 (612)
Q Consensus 3 g~~f~e~L~~lGyp~a~~L~~e~fdWlf~~-------~e~~~FL~Wfc~nV~~~NVLS~~EL~-~f~~L~~sGk-iLeg~ 73 (612)
-.+|...|+.+|++.+ .+.+..+|.. -++..|+.++.........-..+++. +|..+-..|. .++.+
T Consensus 30 ~~el~~~l~~lg~~~~----~~~~~~l~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~ 105 (159)
T 2ovk_C 30 AAKVGDLLRCLGMNPT----EAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCC----HHHHHHTTCCSSTTSCEEEHHHHHHHHHHHTTCSTTCCHHHHHHHHHHTCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhccCCCcHHHHHHHHHHHCCCCCCcCcHH
Confidence 4789999999998654 3445555521 23677888885433333333444443 6777777776 67777
Q ss_pred hHHHHHhhcc
Q 007223 74 DLESAFDSIS 83 (612)
Q Consensus 74 ~Ld~al~~i~ 83 (612)
++-.++..+.
T Consensus 106 El~~~l~~~g 115 (159)
T 2ovk_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 7777777654
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.20 E-value=2e+02 Score=23.97 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhHHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARV 148 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~ 148 (612)
+++.|+..-..|..+.+.++.....+..+.+.|...-+....+.+.++
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555554445444444444444443
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.33 E-value=1.2e+02 Score=23.13 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhH
Q 007223 109 TQAYRDEAAQLQRQLRHLQCQFDMLT 134 (612)
Q Consensus 109 ~e~L~~e~~~lqk~~~~l~~~~~~L~ 134 (612)
.++|+.|..+|+.....|..++.+|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444443
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.34 E-value=2.4e+02 Score=24.85 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhHhhHHHHHHhHHHHHHH
Q 007223 268 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEK 338 (612)
Q Consensus 268 EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~ 338 (612)
|+..++...-.=+.++-..+..+++..+.+.-+...... ....+..+|..+..++..++.+++.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~-------~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL-------ALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555554333222233333344444444444444332221 1345555666666666666655543
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.32 E-value=38 Score=29.47 Aligned_cols=40 Identities=48% Similarity=0.623 Sum_probs=0.0
Q ss_pred ccchhhhhHhhHHHHHHhHHHHHHHhhcccchHHHHHhhchhccccccchhh
Q 007223 314 DFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYD 365 (612)
Q Consensus 314 d~~~L~~ki~~l~~el~~L~~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~d 365 (612)
...+|+.+|.+|..|...|+.+++.+ + ++|.... ++||||
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L--E---------~~Le~~~-l~Gd~~ 52 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML--E---------AQLERRA-LQGDYD 52 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHSS-CCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHh-hccccC
No 18
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=23.68 E-value=37 Score=29.31 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=45.4
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccCCC----CCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007223 2 SGARLCALLCELGYGGADSLDPDSFEWPFQY----DDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (612)
Q Consensus 2 ~g~~f~e~L~~lGyp~a~~L~~e~fdWlf~~----~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (612)
+-.+|...|+.+|++.+ .+.+..+|.+ -++..|+.++...+.... +.+++ .+|..+-..|. .++.+++
T Consensus 36 ~~~el~~~l~~~g~~~~----~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~I~~~el 109 (156)
T 1wdc_B 36 SKEDIKAISEQLGRAPD----DKELTAMLKEAPGPLNFTMFLSIFSDKLSGTD--SEETIRNAFAMFDEQETKKLNIEYI 109 (156)
T ss_dssp CHHHHHHHHHHHSSCCC----HHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCC--CHHHHHHHHHTTCTTCCSCEEHHHH
T ss_pred cHHHHHHHHHHhCCCCC----HHHHHHHHHhCCCcCcHHHHHHHHHHHhcCCC--hHHHHHHHHHHHCcCCCCccCHHHH
Confidence 34688899999987654 4445555532 357778877775543221 33333 35666666666 5666777
Q ss_pred HHHHhhc
Q 007223 76 ESAFDSI 82 (612)
Q Consensus 76 d~al~~i 82 (612)
-.++..+
T Consensus 110 ~~~l~~~ 116 (156)
T 1wdc_B 110 KDLLENM 116 (156)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 6666654
No 19
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.28 E-value=2.9e+02 Score=22.82 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhH
Q 007223 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRR 145 (612)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~ 145 (612)
.++|.|-.+-..|-+-...+.-.++-|+.+.++|++.-..+.....
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELE 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3556665555566666666666677777888888887777765443
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.94 E-value=1.3e+02 Score=23.05 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDM 132 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~ 132 (612)
.+|.|+.+...|+..+..|+++..-+..++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888888888888888888877777654
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.74 E-value=2.7e+02 Score=25.18 Aligned_cols=30 Identities=7% Similarity=0.106 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHH
Q 007223 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHA 137 (612)
Q Consensus 108 ~~e~L~~e~~~lqk~~~~l~~~~~~L~~~a 137 (612)
..+.|+.++..+.+....+.+.+..++...
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.52 E-value=2.8e+02 Score=22.52 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHhh
Q 007223 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (612)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (612)
+..+++.+......+.++..+++....+...++..+.......
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666777788888888888888887777766544333
No 23
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=22.37 E-value=63 Score=27.10 Aligned_cols=76 Identities=9% Similarity=0.150 Sum_probs=38.8
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccC----------CCCCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CC
Q 007223 3 GARLCALLCELGYGGADSLDPDSFEWPF----------QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LL 70 (612)
Q Consensus 3 g~~f~e~L~~lGyp~a~~L~~e~fdWlf----------~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iL 70 (612)
-.+|...|+.+|++.+ .+.+..+| ..-++..|+.+++......+--+..++ ..|..+-..|. .+
T Consensus 27 ~~el~~~l~~~~~~~~----~~~~~~l~~~~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i 102 (149)
T 2mys_C 27 ASQVGDIARALGQNPT----NAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTV 102 (149)
T ss_pred HHHHHHHHHHhCCCCC----HHHHHHHHHHhhhccccCCcCcHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceE
Confidence 4678888888887644 33344444 113455666666553111111122222 34555555555 56
Q ss_pred ChhhHHHHHhhc
Q 007223 71 EGEDLESAFDSI 82 (612)
Q Consensus 71 eg~~Ld~al~~i 82 (612)
+.+++-.++..+
T Consensus 103 ~~~el~~~l~~~ 114 (149)
T 2mys_C 103 MGAELRHVLATL 114 (149)
T ss_pred cHHHHHHHHHHh
Confidence 666666666554
No 24
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.08 E-value=1.7e+02 Score=22.13 Aligned_cols=36 Identities=14% Similarity=0.006 Sum_probs=31.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 007223 403 KRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALI 438 (612)
Q Consensus 403 ~r~~~~~~~lL~~l~~eL~~~~~~~~~R~~~~~~~~ 438 (612)
+++....+..|..=+++|+..++...++++++..+-
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 457788888898899999999999999999988774
No 25
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.28 E-value=1.5e+02 Score=21.24 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007223 100 EGLKDIREATQAYRDEAAQLQRQLRHLQC 128 (612)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~ 128 (612)
+.+++.++.+..|+..++.|++-++.+=.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888999999999888876543
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.45 E-value=3.8e+02 Score=28.88 Aligned_cols=15 Identities=20% Similarity=0.353 Sum_probs=8.5
Q ss_pred CCCCCchhHHHHHHc
Q 007223 30 FQYDDARPILDWICS 44 (612)
Q Consensus 30 f~~~e~~~FL~Wfc~ 44 (612)
|+.+...|++.++..
T Consensus 392 cc~~~~~~~~~~~~~ 406 (597)
T 3oja_B 392 CCKESDKPYLDRLLQ 406 (597)
T ss_dssp EEECCSSHHHHHHHH
T ss_pred cccCCCccchhHHHH
Confidence 444566677665443
No 27
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=20.01 E-value=57 Score=27.37 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=38.3
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccCCC----CCchhHHHHHHccCCCCCCCCHHH-HhHHHHHHhccc-CCChhhH
Q 007223 2 SGARLCALLCELGYGGADSLDPDSFEWPFQY----DDARPILDWICSSLRPSNVLSLSE-LSQFEQFLQEEK-LLEGEDL 75 (612)
Q Consensus 2 ~g~~f~e~L~~lGyp~a~~L~~e~fdWlf~~----~e~~~FL~Wfc~nV~~~NVLS~~E-L~~f~~L~~sGk-iLeg~~L 75 (612)
+-.+|...|+.+|++.+ ++.+..+|.+ -++..|+.++.......+--.... ..+|..+-..|. .++.+++
T Consensus 23 ~~~el~~~l~~~g~~~~----~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el 98 (140)
T 1ggw_A 23 PKTSIGDLLRACGQNPT----LAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGEL 98 (140)
T ss_dssp CHHHHHHHHHHTSCCCC----HHHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred CHHHHHHHHHHcCCCCC----HHHHHHHHhCCCCcCcHHHHHHHHHHHhcccCcccHHHHHHHHHHhCCCCCCcEeHHHH
Confidence 34688899999988644 3334444431 125556666555433211111122 234444444444 4555555
Q ss_pred HHHHhhc
Q 007223 76 ESAFDSI 82 (612)
Q Consensus 76 d~al~~i 82 (612)
-.++..+
T Consensus 99 ~~~l~~~ 105 (140)
T 1ggw_A 99 RYVLTSL 105 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555443
Done!