Query 007223
Match_columns 612
No_of_seqs 83 out of 85
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 20:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ggwa_ a.39.1.5 (A:) Cdc4p {F 57.3 2.8 0.00021 35.0 2.9 78 2-83 23-106 (140)
2 d2mysc_ a.39.1.5 (C:) Myosin R 54.7 3.4 0.00025 34.3 3.0 77 3-83 23-111 (145)
3 d1wdcc_ a.39.1.5 (C:) Myosin R 29.4 10 0.00075 31.6 1.9 79 3-83 28-112 (152)
4 d1wdcb_ a.39.1.5 (B:) Myosin E 28.8 7.7 0.00056 32.1 0.9 76 2-83 25-106 (142)
5 d1seta1 a.2.7.1 (A:1-110) Sery 21.9 1E+02 0.0076 24.2 6.9 25 164-188 75-99 (110)
6 d2j01f1 c.22.1.1 (F:1-208) Rib 20.2 23 0.0017 32.0 2.5 65 4-78 137-202 (208)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 18.7 1E+02 0.0074 24.9 6.3 37 101-137 2-38 (133)
8 d2diia1 a.240.1.1 (A:8-55) TFI 16.1 34 0.0025 24.0 2.0 26 562-587 7-32 (48)
9 d2mysb_ a.39.1.5 (B:) Myosin E 13.7 40 0.0029 27.4 2.2 77 2-83 25-107 (145)
10 d2hf5a1 a.39.1.5 (A:81-113) Tr 13.3 57 0.0042 21.0 2.4 30 53-82 1-32 (33)
No 1
>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=57.31 E-value=2.8 Score=34.98 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=55.7
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccC----CCCCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007223 2 SGARLCALLCELGYGGADSLDPDSFEWPF----QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (612)
Q Consensus 2 ~g~~f~e~L~~lGyp~a~~L~~e~fdWlf----~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (612)
+-.+|..+|+.+|++.+. +.+.-+. ..-.+..|+.|+........--+.+++ ++|..+-..|. .++.++|
T Consensus 23 ~~~el~~~l~~lg~~~t~----~ei~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el 98 (140)
T d1ggwa_ 23 PKTSIGDLLRACGQNPTL----AEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGEL 98 (140)
T ss_dssp CHHHHHHHHHHTSCCCCH----HHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred CHHHHHHHHHHHHhhhHH----HhhhhhhccccccccchhhhhhhhhhhhcchhhHHHHHHHHHHHHhccCCCcchHHHH
Confidence 346899999999987652 2222222 123478899999887766655566666 57888888888 7888888
Q ss_pred HHHHhhcc
Q 007223 76 ESAFDSIS 83 (612)
Q Consensus 76 d~al~~i~ 83 (612)
-.+|..+.
T Consensus 99 ~~~l~~~g 106 (140)
T d1ggwa_ 99 RYVLTSLG 106 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 88888765
No 2
>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=54.71 E-value=3.4 Score=34.27 Aligned_cols=77 Identities=9% Similarity=0.146 Sum_probs=54.3
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccCC----------CCCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CC
Q 007223 3 GARLCALLCELGYGGADSLDPDSFEWPFQ----------YDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LL 70 (612)
Q Consensus 3 g~~f~e~L~~lGyp~a~~L~~e~fdWlf~----------~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iL 70 (612)
-.+|...|+.+|++-+ ++.+..++. .-++..|+.+++..+.+...-+.+++ .+|..+-..|. .+
T Consensus 23 ~~el~~~l~~lg~~~~----~~e~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I 98 (145)
T d2mysc_ 23 ASQVGDIARALGQNPT----NAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTV 98 (145)
T ss_pred HHHHHHHHHHhhhcch----hhhhHHHHHHHhhcccccCccchhHHHHHHhhhhhccccchHHHHHHHHHHhhcCCCCEE
Confidence 3689999999998754 222332221 13567888888887766655555555 68999888888 78
Q ss_pred ChhhHHHHHhhcc
Q 007223 71 EGEDLESAFDSIS 83 (612)
Q Consensus 71 eg~~Ld~al~~i~ 83 (612)
+.+++-.++.++.
T Consensus 99 ~~~el~~~l~~~g 111 (145)
T d2mysc_ 99 MGAELRHVLATLG 111 (145)
T ss_pred cHHHHHHHHHHhC
Confidence 8899988888765
No 3
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=29.38 E-value=10 Score=31.58 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=52.0
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccCCC----CCchhHHHHHHccCCCCCCCCHHH-HhHHHHHHhccc-CCChhhHH
Q 007223 3 GARLCALLCELGYGGADSLDPDSFEWPFQY----DDARPILDWICSSLRPSNVLSLSE-LSQFEQFLQEEK-LLEGEDLE 76 (612)
Q Consensus 3 g~~f~e~L~~lGyp~a~~L~~e~fdWlf~~----~e~~~FL~Wfc~nV~~~NVLS~~E-L~~f~~L~~sGk-iLeg~~Ld 76 (612)
-.+|..+|+.+||.-+..-- ..+-+.+.+ -++..|+.|+....+... -+.++ .++|..+-..|. .++-.+|-
T Consensus 28 ~~el~~~l~~lG~~~t~~e~-~~~~~~~~~~~~~i~~~eFl~~~~~~~~~~~-~~~~~l~~aF~~~D~~~~G~I~~~el~ 105 (152)
T d1wdcc_ 28 AFKLGDVCRCLGINPRNEDV-FAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQ-GTFADYMEAFKTFDREGQGFISGAELR 105 (152)
T ss_dssp GGGHHHHHHHTTCCCCHHHH-HHTTCCSSTTSCEECHHHHHHHHHHHTTSCC-CCHHHHHHHHHTTCSSSSSEEEHHHHH
T ss_pred HHHHHHHHHHhccCccHhhh-hhhhhhhccccccccccccccccccccccch-hHHHhhhhhhhccccccCccchHHHHH
Confidence 45899999999997542200 123344422 246789998877655433 23444 468888888887 78888888
Q ss_pred HHHhhcc
Q 007223 77 SAFDSIS 83 (612)
Q Consensus 77 ~al~~i~ 83 (612)
.++.++.
T Consensus 106 ~~l~~~g 112 (152)
T d1wdcc_ 106 HVLTALG 112 (152)
T ss_dssp HHHHHSS
T ss_pred HHHHHcC
Confidence 8887765
No 4
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=28.82 E-value=7.7 Score=32.09 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=54.0
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccC----CCCCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007223 2 SGARLCALLCELGYGGADSLDPDSFEWPF----QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (612)
Q Consensus 2 ~g~~f~e~L~~lGyp~a~~L~~e~fdWlf----~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~~L 75 (612)
+-.+|..+|+.+|++.+. +.+.=++ ..-.+..|+.|++..+...+ +.+++ .+|..+-+.|. -++-++|
T Consensus 25 ~~~el~~~l~~lg~~~~~----~el~~~~~~~~~~i~~~eF~~~~~~~~~~~~--~~~~l~~aF~~~D~d~~G~I~~~el 98 (142)
T d1wdcb_ 25 SKEDIKAISEQLGRAPDD----KELTAMLKEAPGPLNFTMFLSIFSDKLSGTD--SEETIRNAFAMFDEQETKKLNIEYI 98 (142)
T ss_dssp CHHHHHHHHHHHSSCCCH----HHHHHHHTTSSSCCCHHHHHHHHHHHTCSCC--CHHHHHHHHHTTCTTCCSCEEHHHH
T ss_pred ChHHHHHHHHHhhcCCCH----HHHHHHHHhccCccccccccccccccccccc--hhhhHHHhhhhhcccCCCcccHHHH
Confidence 346889999999988652 2222223 23457899999998776654 34555 46888888888 7888888
Q ss_pred HHHHhhcc
Q 007223 76 ESAFDSIS 83 (612)
Q Consensus 76 d~al~~i~ 83 (612)
-.++.++.
T Consensus 99 ~~~l~~~g 106 (142)
T d1wdcb_ 99 KDLLENMG 106 (142)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHcc
Confidence 88888775
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=21.92 E-value=1e+02 Score=24.17 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=14.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhh
Q 007223 164 GLSARNLQMNDVLGRIASTAQELAH 188 (612)
Q Consensus 164 ~l~~~n~~~n~~L~~l~~~v~~L~~ 188 (612)
.++.....+...+..+......++.
T Consensus 75 ~lk~~i~~le~~~~~~~~~l~~~ll 99 (110)
T d1seta1 75 ALGEEAKRLEEALREKEARLEALLL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666655553
No 6
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]}
Probab=20.16 E-value=23 Score=31.96 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=49.1
Q ss_pred hhHHHHHHhcCCCCCCCCCCCCCcccCCCCCchhHHHHHHccCCCCCCCCHHHHhHHHHHHhccc-CCChhhHHHH
Q 007223 4 ARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEK-LLEGEDLESA 78 (612)
Q Consensus 4 ~~f~e~L~~lGyp~a~~L~~e~fdWlf~~~e~~~FL~Wfc~nV~~~NVLS~~EL~~f~~L~~sGk-iLeg~~Ld~a 78 (612)
++|++.|+++|+++...+ |+.+++ +. +..-|.|+..-+|++..++..|+-| +.++ |++.++++.-
T Consensus 137 K~~~~~L~~l~l~~~~~v-------l~v~~~-en-~~~s~rNi~~v~v~~~~~lNv~dlL-~~~~lvit~~Al~~L 202 (208)
T d2j01f1 137 KEFLAWAKEAGLDGSESV-------LLVTGN-EL-VRRAARNLPWVVTLAPEGLNVYDIV-RTERLVMDLDAWEVF 202 (208)
T ss_dssp HHHHHHHHHHTCCSSSCE-------EEECSC-HH-HHHHHTTCTTEEEECGGGCCHHHHH-HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHhccccccce-------eeccch-hH-HHHHHhCCCCCEEeecCCccHHHHh-cCCcEEEEHHHHHHH
Confidence 589999999998876322 333322 33 5578899999999999999999887 6677 6888887554
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.71 E-value=1e+02 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH
Q 007223 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHA 137 (612)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~a 137 (612)
+|++|...++.|+.+++.++.++..+.....+++...
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~ 38 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILE 38 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666767777777777777777777666555555543
No 8
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.12 E-value=34 Score=23.96 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=20.4
Q ss_pred HHHHhHHHhhhcCChhhhhhhhhhhh
Q 007223 562 LEHCKKNEIIKHHSQEVGLQRRVFVD 587 (612)
Q Consensus 562 ~~~~~Kr~~L~~~~~~~~~eR~lyV~ 587 (612)
+|.+.|.++|+.||-..|.=|.|-|-
T Consensus 7 keLeEKnr~L~enp~L~qLYkdLVvs 32 (48)
T d2diia1 7 KELEEKNRMLQEDPVLFQLYKDLVVS 32 (48)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccCHHHHHHHHHHHHh
Confidence 46779999999998877777776653
No 9
>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.65 E-value=40 Score=27.36 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=47.7
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccC----CCCCchhHHHHHHccCCCCCCCCHHH-HhHHHHHHhccc-CCChhhH
Q 007223 2 SGARLCALLCELGYGGADSLDPDSFEWPF----QYDDARPILDWICSSLRPSNVLSLSE-LSQFEQFLQEEK-LLEGEDL 75 (612)
Q Consensus 2 ~g~~f~e~L~~lGyp~a~~L~~e~fdWlf----~~~e~~~FL~Wfc~nV~~~NVLS~~E-L~~f~~L~~sGk-iLeg~~L 75 (612)
+..+|..+|+.+|+.... ++.++=.+ ..-++..|+.++.......+ ++++ ..+|..+-..|+ .++-+++
T Consensus 25 ~~~e~~~~l~~lg~~~~~---~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~aF~~fD~~~~g~I~~~el 99 (145)
T d2mysb_ 25 DKDDLRETFAAMGRLNVK---NEELDAMIKEASGPINFTVFLTMFGEKLKGAD--PEDVIMGAFKVLDPDGKGSIKKSFL 99 (145)
T ss_pred CHHHHHHHHHHhCCCcch---HHHHHHHHHhccCceeechhhhhhhhcccccc--hHHHHHHHHHhhhhcccchhhHHHH
Confidence 456888999999865431 11111111 12346788887776544322 3333 447888888888 7888888
Q ss_pred HHHHhhcc
Q 007223 76 ESAFDSIS 83 (612)
Q Consensus 76 d~al~~i~ 83 (612)
-.++.++.
T Consensus 100 ~~~l~~~g 107 (145)
T d2mysb_ 100 EELLTTGG 107 (145)
T ss_pred HHHHHHcC
Confidence 88887765
No 10
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=13.29 E-value=57 Score=21.01 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=22.2
Q ss_pred CHHHH-hHHHHHHhccc-CCChhhHHHHHhhc
Q 007223 53 SLSEL-SQFEQFLQEEK-LLEGEDLESAFDSI 82 (612)
Q Consensus 53 S~~EL-~~f~~L~~sGk-iLeg~~Ld~al~~i 82 (612)
|++|+ ++|..+-+.|. ..+..+|-.++.++
T Consensus 1 seeel~eAF~~FDkDg~G~Is~~EL~~vm~~l 32 (33)
T d2hf5a1 1 SEEEIREAFRVFDKDGNGYISAAELRHVMTNL 32 (33)
T ss_dssp CHHHHHHHHHHHSSSCCSCBCHHHHHHHTTSC
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 44555 48888888888 78888888877654
Done!