Query 007226
Match_columns 612
No_of_seqs 245 out of 670
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 20:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 7E-110 2E-114 930.1 45.4 493 7-548 99-613 (615)
2 cd06424 UGGPase UGGPase cataly 100.0 1.1E-83 2.3E-88 671.1 27.3 308 37-371 1-315 (315)
3 PLN02435 probable UDP-N-acetyl 100.0 9.2E-83 2E-87 695.5 32.5 376 10-432 85-472 (493)
4 PLN02474 UTP--glucose-1-phosph 100.0 1.7E-81 3.7E-86 682.1 34.0 379 31-495 74-458 (469)
5 PTZ00339 UDP-N-acetylglucosami 100.0 3.4E-76 7.3E-81 645.2 33.9 370 20-434 88-465 (482)
6 PF01704 UDPGP: UTP--glucose-1 100.0 1.8E-75 3.8E-80 632.3 24.2 366 28-472 48-420 (420)
7 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 3.7E-73 7.9E-78 597.4 26.5 315 25-371 2-323 (323)
8 cd00897 UGPase_euk Eukaryotic 100.0 2.2E-71 4.8E-76 576.5 25.2 287 34-374 1-291 (300)
9 KOG2388 UDP-N-acetylglucosamin 100.0 4.1E-69 8.9E-74 575.4 19.7 362 23-432 82-450 (477)
10 KOG2638 UDP-glucose pyrophosph 100.0 7.2E-67 1.6E-71 545.6 27.7 383 28-494 95-483 (498)
11 COG4284 UDP-glucose pyrophosph 100.0 1.1E-59 2.3E-64 504.3 24.4 331 28-410 95-434 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 8.6E-59 1.9E-63 477.0 25.2 260 37-369 1-266 (266)
13 COG1207 GlmU N-acetylglucosami 98.1 0.00091 2E-08 73.0 23.9 187 36-297 2-189 (460)
14 PRK05293 glgC glucose-1-phosph 97.9 0.00066 1.4E-08 73.2 18.8 196 35-296 2-205 (380)
15 PRK00844 glgC glucose-1-phosph 97.7 0.0023 5E-08 70.1 19.1 205 33-296 2-212 (407)
16 PRK02862 glgC glucose-1-phosph 97.6 0.0041 8.9E-08 68.8 19.8 209 36-296 3-225 (429)
17 PRK14352 glmU bifunctional N-a 97.6 0.0025 5.3E-08 71.3 17.8 187 35-296 3-191 (482)
18 cd02540 GT2_GlmU_N_bac N-termi 97.6 0.0032 6.9E-08 62.4 16.3 181 39-296 1-182 (229)
19 TIGR02092 glgD glucose-1-phosp 97.6 0.0018 3.8E-08 69.7 15.5 192 36-296 2-203 (369)
20 PRK14356 glmU bifunctional N-a 97.6 0.0025 5.4E-08 70.4 17.0 184 36-296 5-189 (456)
21 cd06915 NTP_transferase_WcbM_l 97.5 0.005 1.1E-07 60.4 17.2 176 39-294 1-180 (223)
22 cd04197 eIF-2B_epsilon_N The N 97.5 0.003 6.5E-08 62.9 15.7 124 39-213 3-129 (217)
23 cd04181 NTP_transferase NTP_tr 97.5 0.0043 9.3E-08 60.6 16.6 175 40-295 2-180 (217)
24 cd04189 G1P_TT_long G1P_TT_lon 97.5 0.0046 1E-07 61.8 17.0 68 38-126 2-72 (236)
25 PRK14360 glmU bifunctional N-a 97.5 0.0032 6.9E-08 69.4 17.1 185 37-296 2-186 (450)
26 PRK14359 glmU bifunctional N-a 97.5 0.0057 1.2E-07 66.9 18.0 178 37-296 3-180 (430)
27 PRK15480 glucose-1-phosphate t 97.4 0.0064 1.4E-07 64.1 17.5 180 36-292 3-185 (292)
28 PRK14353 glmU bifunctional N-a 97.4 0.0057 1.2E-07 67.4 17.3 184 36-296 5-189 (446)
29 PLN02241 glucose-1-phosphate a 97.4 0.0079 1.7E-07 66.6 18.3 216 35-296 2-231 (436)
30 TIGR01207 rmlA glucose-1-phosp 97.4 0.0067 1.5E-07 63.7 16.8 176 39-291 2-180 (286)
31 PF00483 NTP_transferase: Nucl 97.4 0.00074 1.6E-08 67.8 9.2 184 40-295 3-191 (248)
32 TIGR01173 glmU UDP-N-acetylglu 97.4 0.0028 6.2E-08 69.5 14.3 62 38-120 2-63 (451)
33 PRK14355 glmU bifunctional N-a 97.3 0.0077 1.7E-07 66.8 17.6 185 36-296 3-188 (459)
34 PRK00725 glgC glucose-1-phosph 97.3 0.012 2.5E-07 65.1 18.7 201 35-296 14-224 (425)
35 PRK14358 glmU bifunctional N-a 97.3 0.0089 1.9E-07 67.1 17.3 148 35-245 6-154 (481)
36 cd02509 GDP-M1P_Guanylyltransf 97.2 0.0054 1.2E-07 63.8 14.1 196 38-297 2-208 (274)
37 cd02508 ADP_Glucose_PP ADP-glu 97.2 0.0042 9.1E-08 61.0 12.6 136 40-220 2-143 (200)
38 cd02538 G1P_TT_short G1P_TT_sh 97.2 0.0069 1.5E-07 61.0 14.3 176 38-291 2-181 (240)
39 cd06426 NTP_transferase_like_2 97.2 0.0076 1.7E-07 59.4 14.0 172 39-293 1-175 (220)
40 PRK05450 3-deoxy-manno-octulos 97.2 0.035 7.7E-07 55.9 18.7 189 36-296 2-194 (245)
41 cd06425 M1P_guanylylT_B_like_N 97.1 0.022 4.8E-07 57.1 16.7 178 39-294 3-186 (233)
42 TIGR01208 rmlA_long glucose-1- 97.1 0.026 5.6E-07 60.4 17.4 175 39-292 2-180 (353)
43 cd06428 M1P_guanylylT_A_like_N 97.0 0.033 7.2E-07 56.8 17.3 181 40-294 2-190 (257)
44 TIGR02091 glgC glucose-1-phosp 97.0 0.022 4.9E-07 60.9 16.5 196 40-296 2-206 (361)
45 TIGR00454 conserved hypothetic 97.0 0.0011 2.3E-08 65.2 5.7 61 38-120 2-62 (183)
46 PRK14357 glmU bifunctional N-a 97.0 0.019 4.1E-07 63.3 16.0 177 38-296 2-179 (448)
47 COG2266 GTP:adenosylcobinamide 96.9 0.0013 2.9E-08 64.1 5.6 61 38-121 2-62 (177)
48 cd02524 G1P_cytidylyltransfera 96.9 0.027 5.8E-07 57.4 14.7 189 39-292 1-197 (253)
49 cd02517 CMP-KDO-Synthetase CMP 96.8 0.11 2.3E-06 52.2 18.5 185 36-296 1-191 (239)
50 PRK13385 2-C-methyl-D-erythrit 96.7 0.0022 4.7E-08 64.6 5.7 66 36-120 2-67 (230)
51 PRK14354 glmU bifunctional N-a 96.7 0.054 1.2E-06 59.8 16.9 182 37-296 3-185 (458)
52 TIGR01105 galF UTP-glucose-1-p 96.7 0.004 8.7E-08 65.8 7.2 64 36-120 3-69 (297)
53 PF01128 IspD: 2-C-methyl-D-er 96.6 0.0029 6.3E-08 64.3 5.1 65 37-120 1-65 (221)
54 cd04182 GT_2_like_f GT_2_like_ 96.6 0.0032 6.9E-08 59.9 5.1 50 37-106 1-50 (186)
55 PLN02728 2-C-methyl-D-erythrit 96.5 0.0039 8.4E-08 64.4 5.9 42 36-84 24-65 (252)
56 PRK09451 glmU bifunctional N-a 96.5 0.048 1E-06 60.5 14.8 180 36-296 5-185 (456)
57 cd06422 NTP_transferase_like_1 96.5 0.0064 1.4E-07 60.3 7.2 66 39-126 2-70 (221)
58 cd04198 eIF-2B_gamma_N The N-t 96.5 0.032 6.9E-07 55.6 12.0 130 39-222 3-135 (214)
59 TIGR02623 G1P_cyt_trans glucos 96.5 0.068 1.5E-06 54.8 14.7 190 39-291 2-195 (254)
60 PRK10122 GalU regulator GalF; 96.4 0.0089 1.9E-07 63.1 7.8 64 35-119 2-68 (297)
61 COG1213 Predicted sugar nucleo 96.4 0.008 1.7E-07 61.4 6.9 67 37-123 4-70 (239)
62 COG0746 MobA Molybdopterin-gua 96.4 0.0072 1.6E-07 60.1 6.5 97 36-201 4-103 (192)
63 PF12804 NTP_transf_3: MobA-li 96.4 0.0047 1E-07 57.9 4.9 48 39-106 1-48 (160)
64 PRK13368 3-deoxy-manno-octulos 96.3 0.32 6.8E-06 48.8 18.1 103 36-200 2-104 (238)
65 PRK00560 molybdopterin-guanine 96.3 0.0044 9.5E-08 61.2 4.3 39 36-83 8-47 (196)
66 TIGR03310 matur_ygfJ molybdenu 96.2 0.0078 1.7E-07 57.8 5.4 48 39-106 2-49 (188)
67 cd02513 CMP-NeuAc_Synthase CMP 96.0 0.12 2.7E-06 50.8 13.1 39 36-84 1-39 (223)
68 PRK14490 putative bifunctional 95.9 0.011 2.5E-07 64.1 6.0 40 35-83 173-212 (369)
69 TIGR02665 molyb_mobA molybdopt 95.9 0.0069 1.5E-07 58.4 3.6 38 37-82 1-38 (186)
70 cd02503 MobA MobA catalyzes th 95.9 0.0063 1.4E-07 58.3 3.4 48 38-106 2-49 (181)
71 TIGR01099 galU UTP-glucose-1-p 95.8 0.014 3.1E-07 59.3 5.7 61 39-120 3-66 (260)
72 TIGR01479 GMP_PMI mannose-1-ph 95.7 0.13 2.8E-06 57.8 13.4 194 39-297 3-210 (468)
73 TIGR00453 ispD 2-C-methyl-D-er 95.7 0.0086 1.9E-07 59.3 3.4 39 39-84 2-40 (217)
74 PRK02726 molybdopterin-guanine 95.6 0.011 2.3E-07 58.6 3.8 39 36-83 7-45 (200)
75 cd02516 CDP-ME_synthetase CDP- 95.6 0.0098 2.1E-07 58.7 3.4 41 37-84 1-41 (218)
76 PRK00155 ispD 2-C-methyl-D-ery 95.6 0.011 2.4E-07 59.1 3.8 42 36-84 3-44 (227)
77 PRK00317 mobA molybdopterin-gu 95.6 0.013 2.7E-07 57.2 4.0 39 36-82 3-41 (193)
78 TIGR03202 pucB xanthine dehydr 95.5 0.012 2.6E-07 57.3 3.7 37 38-83 2-38 (190)
79 COG1208 GCD1 Nucleoside-diphos 95.4 0.036 7.8E-07 60.1 7.3 179 37-292 2-184 (358)
80 COG1209 RfbA dTDP-glucose pyro 95.3 0.36 7.8E-06 50.6 13.6 159 40-261 4-165 (286)
81 PRK14489 putative bifunctional 95.2 0.02 4.3E-07 62.2 4.5 42 34-83 3-44 (366)
82 cd02541 UGPase_prokaryotic Pro 95.2 0.03 6.5E-07 57.3 5.5 61 39-120 3-66 (267)
83 PLN02917 CMP-KDO synthetase 95.1 0.53 1.1E-05 49.8 14.6 186 36-296 47-237 (293)
84 cd02523 PC_cytidylyltransferas 95.0 0.044 9.5E-07 54.6 6.1 61 39-120 1-64 (229)
85 PRK14500 putative bifunctional 94.9 0.024 5.1E-07 61.4 3.8 39 36-83 160-198 (346)
86 PRK09382 ispDF bifunctional 2- 94.5 0.032 6.9E-07 61.1 3.8 43 35-84 4-46 (378)
87 COG1211 IspD 4-diphosphocytidy 94.5 0.064 1.4E-06 54.9 5.7 65 36-119 4-68 (230)
88 cd02507 eIF-2B_gamma_N_like Th 94.1 0.094 2E-06 52.4 5.9 63 39-122 3-68 (216)
89 PRK13389 UTP--glucose-1-phosph 94.0 0.086 1.9E-06 55.9 5.6 63 37-120 9-74 (302)
90 cd04183 GT2_BcE_like GT2_BcbE_ 93.9 0.037 8.1E-07 55.1 2.7 38 39-83 1-41 (231)
91 TIGR00466 kdsB 3-deoxy-D-manno 93.2 0.26 5.7E-06 50.2 7.4 35 39-83 2-36 (238)
92 KOG1322 GDP-mannose pyrophosph 92.9 4 8.7E-05 44.0 15.7 186 35-296 8-199 (371)
93 COG0448 GlgC ADP-glucose pyrop 92.2 2.6 5.6E-05 46.5 13.6 200 35-297 4-210 (393)
94 PRK15460 cpsB mannose-1-phosph 91.7 0.3 6.6E-06 55.2 6.1 203 37-297 6-219 (478)
95 cd02518 GT2_SpsF SpsF is a gly 91.3 0.4 8.7E-06 48.1 6.0 59 39-119 2-61 (233)
96 COG1210 GalU UDP-glucose pyrop 89.2 0.48 1.1E-05 49.7 4.6 63 39-119 7-69 (291)
97 COG0836 {ManC} Mannose-1-phosp 86.1 1.2 2.7E-05 47.6 5.5 199 38-297 3-212 (333)
98 COG4750 LicC CTP:phosphocholin 85.4 0.62 1.3E-05 46.6 2.6 60 39-120 3-65 (231)
99 COG2068 Uncharacterized MobA-r 79.3 2.3 4.9E-05 42.8 4.1 52 35-106 4-55 (199)
100 TIGR03584 PseF pseudaminic aci 79.0 33 0.00071 34.6 12.4 183 39-293 2-185 (222)
101 TIGR03808 RR_plus_rpt_1 twin-a 77.8 19 0.00042 40.5 11.0 80 500-586 141-227 (455)
102 COG5608 LEA14-like dessication 48.7 99 0.0021 30.2 8.2 73 468-551 49-140 (161)
103 PF14134 DUF4301: Domain of un 47.0 17 0.00037 41.3 3.3 60 130-199 235-297 (513)
104 PF05726 Pirin_C: Pirin C-term 46.7 69 0.0015 28.4 6.6 67 532-602 18-87 (104)
105 TIGR03808 RR_plus_rpt_1 twin-a 46.1 2.8E+02 0.006 31.6 12.4 93 504-605 116-220 (455)
106 PF10162 G8: G8 domain; Inter 45.0 1.2E+02 0.0025 28.1 8.0 68 451-546 17-86 (125)
107 COG1861 SpsF Spore coat polysa 44.3 35 0.00076 35.2 4.7 67 36-123 3-69 (241)
108 PF02348 CTP_transf_3: Cytidyl 35.9 48 0.001 32.5 4.3 32 49-85 7-38 (217)
109 KOG1460 GDP-mannose pyrophosph 29.7 5.2E+02 0.011 28.2 10.7 184 37-294 4-194 (407)
110 PRK00924 5-keto-4-deoxyuronate 27.3 3.1E+02 0.0067 29.2 8.6 70 504-573 44-116 (276)
111 PF04962 KduI: KduI/IolB famil 26.7 2.3E+02 0.0049 29.8 7.5 61 525-585 38-110 (261)
112 PF04314 DUF461: Protein of un 26.4 1.6E+02 0.0034 26.5 5.6 47 559-607 62-109 (110)
113 PRK00742 chemotaxis-specific m 25.6 1.1E+02 0.0023 32.8 5.1 43 550-592 225-267 (354)
114 PF07538 ChW: Clostridial hydr 25.2 71 0.0015 23.3 2.5 32 512-543 2-35 (36)
115 smart00613 PAW domain present 24.6 1.7E+02 0.0036 25.9 5.2 52 489-547 22-87 (89)
116 PF14134 DUF4301: Domain of un 23.2 89 0.0019 35.8 3.9 35 224-262 383-417 (513)
117 PF06865 DUF1255: Protein of u 22.9 1.6E+02 0.0035 26.4 4.7 34 536-573 51-84 (94)
118 COG1535 EntB Isochorismate hyd 21.7 2.9E+02 0.0063 27.9 6.7 101 72-193 51-151 (218)
119 PRK10579 hypothetical protein; 20.7 1.4E+02 0.0031 26.7 4.0 33 536-572 51-83 (94)
120 PF09919 DUF2149: Uncharacteri 20.6 41 0.00089 29.9 0.6 19 43-62 69-89 (92)
121 KOG2107 Uncharacterized conser 20.4 1.3E+02 0.0028 29.7 3.9 50 525-574 84-142 (179)
122 COG1212 KdsB CMP-2-keto-3-deox 20.3 3E+02 0.0065 28.8 6.7 87 36-143 3-106 (247)
123 smart00328 BPI1 BPI/LBP/CETP N 20.2 1.6E+02 0.0036 29.6 4.9 64 541-611 38-103 (225)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=7.4e-110 Score=930.06 Aligned_cols=493 Identities=23% Similarity=0.308 Sum_probs=444.3
Q ss_pred eeeCCCccccCCChHHHHHHHHhhhhhcCcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHH
Q 007226 7 EIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREF 86 (612)
Q Consensus 7 ~~~vP~g~~l~~~~~~~~~~~~~Gl~~l~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~ 86 (612)
+|++|+|..++++++....++++|+++|+|+|||+||||||||||+++||+ +||++++ +|+||||++++||+++|+
T Consensus 99 ~P~vp~~~~~~~~~~~~~~~~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~--~lpv~~~--~gkt~lql~~e~I~~lq~ 174 (615)
T PLN02830 99 TPSVPEGEVLEYGSEEFVELEEAGLREAGNAAFVLVAGGLGERLGYSGIKV--ALPTETA--TGTCYLQLYIESILALQE 174 (615)
T ss_pred ccCCCccccccccchhhhHHHHHHHHHhCcEEEEEecCCcccccCCCCCCc--ceecccC--CCCcHHHHHHHHHHHHHH
Confidence 567899999988777666777899999999999999999999999999999 9999866 999999999999999999
Q ss_pred HhHhhcC-CcceeeEEEecCCCCCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeec--CCCCcccCCC
Q 007226 87 LYFKLYG-KQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR--PFAPVCKPGG 163 (612)
Q Consensus 87 la~k~~g-~~~~iPl~IMTS~~~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~--~~~l~~~P~G 163 (612)
||.++.+ ..+.||||||||+ +||++|++||++|+|||++++||+||+|+++||+++++|++++++ +++++|+|||
T Consensus 175 la~~~~~~~~~~IPl~IMTS~--~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~G 252 (615)
T PLN02830 175 RAKKRKAKKGRKIPLVIMTSD--DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHG 252 (615)
T ss_pred HHHHhcccCCCCceEEEECCc--chhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCC
Confidence 9987654 5589999999999 799999999999999999999999999999999998889999986 8899999999
Q ss_pred CchHhHHHHhcCchhHHHHCCcEEEEEEecCCCcccc-chhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecC
Q 007226 164 HGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL 242 (612)
Q Consensus 164 hGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN~la~~-Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~ 242 (612)
|||||+||++||+||+|+++|+||+|||||||+|+++ ||.| +|+++.++++|++++|+| .++|++|++|+..+.
T Consensus 253 hGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~f---lG~~~~~~~d~~~kvv~K--~~~E~vGvi~~~~~~ 327 (615)
T PLN02830 253 HGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAA---LGVSATKGFDMNSLAVPR--KAKEAIGAIAKLTHK 327 (615)
T ss_pred ccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHH---hHHHHhcCCceEEEEEEC--CCCcccceEEEEecC
Confidence 9999999999999999999999999999999999998 8855 899999999999998665 467899999985567
Q ss_pred CCceecceEEEEecccCccC----cCCCCCCCCCccccccceeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeec
Q 007226 243 DGKWAYGLSCIEYTEFDKFG----ITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMD 318 (612)
Q Consensus 243 dG~~~~~~~vVEYsel~~~~----~~~~~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D 318 (612)
||++ +++||||+|++++. .++++..++++++.||+||||||++|++|++++++ +.+.+|+++ ||| |+|
T Consensus 328 dG~~--l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~-~~~~lp~iv-NpK----~~d 399 (615)
T PLN02830 328 DGRE--MVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAK-TGGVIEEFV-NPK----YKD 399 (615)
T ss_pred CCCe--eeEEEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHh-CCCccceec-cCc----ccC
Confidence 8873 56899999999883 34456666777999999999999999999999986 889999854 998 888
Q ss_pred CCCCccccCceeeccchhhhhhhhhccccccCCcceEEEccccceeecccCCCchhhhhhcccCCCCCCChhhhHHHHHH
Q 007226 319 NFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILR 398 (612)
Q Consensus 319 ~~g~~~~~~~~rLE~~Mqd~~~~f~~~f~~~~~k~~~~~~~R~~~FsPvKN~~~~~~~~~~~~~~~~~~sp~s~~~dl~~ 398 (612)
.+ .+.++.++|||||||||++++.. .+++||++++||.+|+||||++++|++|++++ + +++||+|+++|+|+
T Consensus 400 ~~-~~v~q~~trle~~mq~f~~~~~~-----~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~-~-~~~~~~s~e~d~y~ 471 (615)
T PLN02830 400 AT-KTAFKSPTRLECMMQDYPKTLPP-----SAKVGFTVFDNWLAYSPVKNSPADGAAKVPEG-N-PTHSATSGEMAIYG 471 (615)
T ss_pred CC-CceeecchHHHHHHHHHhhhcCc-----ccccCceecCchheeccccCChHHhhhhcccC-C-CccCcchhhHHHHH
Confidence 76 45799999999999999999852 56899999999999999999999998888776 4 55599999999999
Q ss_pred HHHHHHHHcCcccCccc----CCCcccccCCCeeEEeCCcccccHHHHhccc-CC-CCcCCCcEEEEEeceEEEeceEEE
Q 007226 399 NAYDILCQCHIKLPEIE----GNDKYIDDGPPYLILLHPALGLLWEVTRQKF-KG-GSVSKGSELQIEVAEFLWRNVQLD 472 (612)
Q Consensus 399 ~~~~~l~~~g~~v~~~~----~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~-~~-~si~~~s~L~veG~~~~~~~v~ld 472 (612)
+++++|..+|+.+..+. +++++++.+|+ |.|+|+|+++++++++|| ++ ++|+++|+|+|+|+++||+||+||
T Consensus 472 ~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~--I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~~~v~Ld 549 (615)
T PLN02830 472 ANCLILRKAGADVEEPVEDVVFNGIEVEVGPR--IVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVIENLSLD 549 (615)
T ss_pred HHHHHHHhcCCccccCccccccCCcccCCCCe--EEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEecCeEEE
Confidence 99999999887765443 46788888997 999999999999999999 76 799999999999999999999999
Q ss_pred EEEEEEeccCCCCceecCCCcceeeccceeceEEEeeeEEeeCcEEeeeCCC--------ceecccceeeeEEEEEEecc
Q 007226 473 GSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--------TYWKHDVQWFEALKVILHGN 544 (612)
Q Consensus 473 G~l~I~a~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~V~N~G~~~~~~~~--------~~w~~~~~r~e~~~i~~~g~ 544 (612)
|+|+|.|.+ |+ +|+|+|+.|+|+||+|++++. .++...+.|.|..++++.-+
T Consensus 550 G~viI~a~~--~~------------------~~~i~g~~v~N~g~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~~ 609 (615)
T PLN02830 550 GALVVRAVP--GA------------------EVTVGGLRVKNKGWTWEPVDKGTSAPEEIRIRGFVIKKVETAELVFDKP 609 (615)
T ss_pred EEEEEEcCC--CC------------------eEEecCeEEecCCcEEEecCCCCCcchhhhhcceeEeeeeeEEEEecCC
Confidence 999999988 54 788999999999999999643 67889999999999999998
Q ss_pred ceeE
Q 007226 545 AEFE 548 (612)
Q Consensus 545 ~~f~ 548 (612)
|.|.
T Consensus 610 g~~~ 613 (615)
T PLN02830 610 GKYT 613 (615)
T ss_pred Ccee
Confidence 8874
No 2
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=1.1e-83 Score=671.07 Aligned_cols=308 Identities=23% Similarity=0.284 Sum_probs=276.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
+|+|+||||||||||+++||| +|||+++ +|+||||++++||+++|++|.+.++ +.|||+||||+ +||++|++
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg--~~~v~~~--~~~s~f~l~~~~i~~l~~~~~~~~~--~~IPl~IMTS~--~Th~~T~~ 72 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKI--GLPVELT--TNTTYLQYYLNYIRAFQEASKKGEK--MEIPFVIMTSD--DTHSKTLK 72 (315)
T ss_pred CEEEEecCCCccccCCCCCce--eeeccCC--CCCcHHHHHHHHHHHHHHHhhccCC--CceeEEEECCC--chhHHHHH
Confidence 589999999999999999999 9999977 9999999999999999998876444 79999999999 79999999
Q ss_pred HHHHcccCCCCCCceEEEEecccceEecCCCee--eeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecC
Q 007226 117 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQW--LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 194 (612)
Q Consensus 117 ~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~--~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vD 194 (612)
||++|+|||++++||++|+|+++||+++.+|++ .++++++++|+|+||||||+||++||+||+|+++|+||++|+|||
T Consensus 73 ~fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vd 152 (315)
T cd06424 73 LLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDT 152 (315)
T ss_pred HHHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecc
Confidence 999999999999999999999999998778999 467899999999999999999999999999999999999999999
Q ss_pred CCcccc-chhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcC----CCCCC
Q 007226 195 NVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT----RGPFS 269 (612)
Q Consensus 195 N~la~~-Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~----~~~~~ 269 (612)
|+|+++ ||.+ +|+++.+++++++++|+|+ +.|+||++|+..+.||+ +.++||||||++++.+. +++.+
T Consensus 153 N~L~~~adP~f---iG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~--~~v~nvEYsel~~~~~~~~~~~g~~~ 225 (315)
T cd06424 153 NALAFKAIPAV---LGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGK--SMTINVEYNQLDPLLRASGKDDGDVD 225 (315)
T ss_pred hhhhhccChhh---EEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCc--eEEEEEEeecCCHHHHhcCCCCCCcc
Confidence 999998 9955 9999999999999987654 57899999975457887 34567999999987543 23444
Q ss_pred CCCccccccceeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCCCCccccCceeeccchhhhhhhhhcccccc
Q 007226 270 SNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 349 (612)
Q Consensus 270 dg~~~s~f~~Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~f~~~ 349 (612)
+.+++|.||||||+|+|+|++|.+++++ +.+.+|+|+ |+| |.|.+ +..+++|+||||||||++++|+.
T Consensus 226 ~~~~~s~f~gNi~~~~f~l~~~~~~l~~-~~~~~~~~~-n~k----y~d~~-~~~~~~p~rlE~~m~D~~~~f~~----- 293 (315)
T cd06424 226 DKTGFSPFPGNINQLVFSLGPYMDELEK-TKGAIPEFI-NPK----YKDAT-KTAFKSPTRLECMMQDIPLLFEE----- 293 (315)
T ss_pred cccccccCCCeeeeEEEeHHHHHHHHhh-ccccCeeee-cCC----cccCC-CCeecCchHHHHHHHHHHHhhcc-----
Confidence 5667899999999999999999999986 678899988 765 99987 35789999999999999999963
Q ss_pred CCcceEEEccccceeecccCCC
Q 007226 350 CYKGVEDDLDTFMVYNERRRVT 371 (612)
Q Consensus 350 ~~k~~~~~~~R~~~FsPvKN~~ 371 (612)
..++++++++||.|||||||++
T Consensus 294 ~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 294 DYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred cceeEEEEEchhhcccccCCCC
Confidence 6789999999999999999963
No 3
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=9.2e-83 Score=695.50 Aligned_cols=376 Identities=18% Similarity=0.210 Sum_probs=322.6
Q ss_pred CCCccccCC--C-hHHHHHHHHhhhhhc--CcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHH
Q 007226 10 VPSGLDLSQ--N-TEYAAQAALWGIEGL--PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 84 (612)
Q Consensus 10 vP~g~~l~~--~-~~~~~~~~~~Gl~~l--~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~l 84 (612)
+|++...+. . .+..+.++++|+++| +++|+|+||||||||||+++||| +|||+++ +++||||++++||+++
T Consensus 85 ~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg--~~~Iglp--s~kslfql~~e~I~~l 160 (493)
T PLN02435 85 VPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKG--CFNIGLP--SGKSLFQLQAERILCV 160 (493)
T ss_pred CChhhccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCcc--ceecCCC--CCCcHHHHHHHHHHHH
Confidence 455544433 2 245556778999999 59999999999999999999999 9999988 9999999999999999
Q ss_pred HHHhHhhcC----CcceeeEEEecCCCCCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCccc
Q 007226 85 EFLYFKLYG----KQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCK 160 (612)
Q Consensus 85 q~la~k~~g----~~~~iPl~IMTS~~~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~ 160 (612)
|.+|.+++| ..+.||||||||+ .||++|++||++|+|||++++||+||+|+++||++ .+|+++++++.+++|+
T Consensus 161 q~la~~~~~~~~~~~~~IPl~IMTS~--~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l~~~~~i~~~ 237 (493)
T PLN02435 161 QRLAAQASSEGPGRPVTIHWYIMTSP--FTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIMETPFKVAKA 237 (493)
T ss_pred HHHHHhhcccccCCCCceeEEEeCCc--chhHHHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCcccCCCcccccC
Confidence 999977654 4578999999999 69999999999999999999999999999999998 7899999999999999
Q ss_pred CCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCCCcccc-chhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEE
Q 007226 161 PGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEK 239 (612)
Q Consensus 161 P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN~la~~-Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~ 239 (612)
||||||||.||++||+|++|+++|++|+|||||||+|+++ ||.| +|+++.++.+++++ |+||+.++|+||++|+.
T Consensus 238 P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~f---lG~~~~~~~d~~~k-Vv~K~~~~EkvG~i~~~ 313 (493)
T PLN02435 238 PDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTF---LGYFIDKGVASAAK-VVRKAYPQEKVGVFVRR 313 (493)
T ss_pred CCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHH---HHHHHhcCCceEEE-eeecCCCCCceeEEEEe
Confidence 9999999999999999999999999999999999999987 9976 89999999999999 58889999999999973
Q ss_pred ecCCCceecceEEEEecccCccCcCCCCCCCCCccccccc-eeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeec
Q 007226 240 KNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMD 318 (612)
Q Consensus 240 ~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s~f~~-Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D 318 (612)
..||+ ++||||||++++.+... .++ +|.+.|.+ |||||||+++||+++.+. ....||+|+|.| ||||+|
T Consensus 314 -~~~g~----~~vvEYsEl~~~~~~~~-~~~-~g~L~~~~gnI~~h~fs~~fL~~~~~~-~~~~l~~H~A~K--kip~~~ 383 (493)
T PLN02435 314 -GKGGP----LTVVEYSELDQAMASAI-NQQ-TGRLRYCWSNVCLHMFTLDFLNQVANG-LEKDSIYHLAEK--KIPSIH 383 (493)
T ss_pred -cCCCC----EEEEEeccCCHHHHhcc-Ccc-ccccccchhhHHHhhccHHHHHHHHHh-hhhcCCceeecc--ccCccC
Confidence 36888 89999999999876532 222 23579998 999999999999998753 344699999994 599999
Q ss_pred CCCCccccCceeeccchhhhhhhhhccccccCCcceEEEccccceeecccCCCchhhhhhcccCCCCCCChhhhHHHHHH
Q 007226 319 NFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILR 398 (612)
Q Consensus 319 ~~g~~~~~~~~rLE~~Mqd~~~~f~~~f~~~~~k~~~~~~~R~~~FsPvKN~~~~~~~~~~~~~~~~~~sp~s~~~dl~~ 398 (612)
.. ++++|||.|++|++.. ..++++.+++|..+|||+||++++. . +||+||+.++++
T Consensus 384 ~~-----~ngiK~E~FiFDvf~~--------a~~~~~~eV~R~~EFaPlKN~~g~~-----~------Dsp~tar~~l~~ 439 (493)
T PLN02435 384 GY-----TMGLKLEQFIFDAFPY--------APSTALFEVLREEEFAPVKNANGSN-----F------DTPESARLLVLR 439 (493)
T ss_pred CC-----cceEEeeeeeecchhh--------cCceEEEEEchhhccCcccCCCCCC-----C------CCHHHHHHHHHH
Confidence 32 4799999988766654 3468899999999999999998753 1 399999999999
Q ss_pred HHHHHHHHcCcccCccc-CCCcccccCCCeeEEeC
Q 007226 399 NAYDILCQCHIKLPEIE-GNDKYIDDGPPYLILLH 432 (612)
Q Consensus 399 ~~~~~l~~~g~~v~~~~-~~~~~~~~~P~~~v~l~ 432 (612)
++++||+++|+.+.... .....+|++|. +.++
T Consensus 440 ~~~~wl~~aG~~~~~~~~~~~~~vEisP~--~sY~ 472 (493)
T PLN02435 440 LHTRWVVAAGGFLTHSVPLYATGVEVSPL--CSYA 472 (493)
T ss_pred HHHHHHHHcCCEecCCccccCCcEEeCCc--eeeC
Confidence 99999999998764221 01235678886 6665
No 4
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=1.7e-81 Score=682.09 Aligned_cols=379 Identities=19% Similarity=0.220 Sum_probs=333.1
Q ss_pred hhhcCcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCc
Q 007226 31 IEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 110 (612)
Q Consensus 31 l~~l~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T 110 (612)
.++|+|+|||+||||||||||+++||| +||++ +|+||||++++||++++ ++|| +.|||+||||+ +|
T Consensus 74 ~~~L~k~avlkLnGGlGTrmG~~~PKs--~i~v~----~~~sfldl~~~qi~~l~----~~~g--~~vPl~iMtS~--~T 139 (469)
T PLN02474 74 KKLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----NGLTFLDLIVIQIENLN----KKYG--CNVPLLLMNSF--NT 139 (469)
T ss_pred HHHHhcEEEEEecCCcccccCCCCCce--eEEcC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--ch
Confidence 457899999999999999999999999 99986 99999999999999998 5777 79999999999 69
Q ss_pred hHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCC---CCcccCCCCchHhHHHHhcCchhHHHHCCcEE
Q 007226 111 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF---APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 187 (612)
Q Consensus 111 ~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~---~l~~~P~GhGdI~~aL~~sGlLd~l~~~Giky 187 (612)
|++|++||++|+||+ .+|++|+|+++||++ .+|+++++.+. +.+|+|+||||+|.+|++||+||+|+++|+||
T Consensus 140 ~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~-~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~ey 215 (469)
T PLN02474 140 HDDTQKIVEKYTNSN---IEIHTFNQSQYPRVV-ADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEY 215 (469)
T ss_pred hHHHHHHHHHcCCCc---cceEEEecCceeeEe-cCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEE
Confidence 999999999999974 589999999999999 56888887554 56699999999999999999999999999999
Q ss_pred EEEEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCC
Q 007226 188 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 267 (612)
Q Consensus 188 v~v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~ 267 (612)
+||+|+||+++.+||.| +|+++.+++++.+++ ++|+.+++++|+||. .||+ ++++||+|+|++.+.+
T Consensus 216 ifv~nvDNLga~vDp~~---lg~~~~~~~e~~~ev-~~Kt~~d~kgG~l~~---~dgk----~~lvEysqvp~e~~~~-- 282 (469)
T PLN02474 216 VFIANSDNLGAIVDLKI---LNHLIQNKNEYCMEV-TPKTLADVKGGTLIS---YEGK----VQLLEIAQVPDEHVNE-- 282 (469)
T ss_pred EEEEecCccccccCHHH---HHHHHhcCCceEEEE-eecCCCCCCccEEEE---ECCE----EEEEEEecCCHHHHHh--
Confidence 99999999877789977 899999999999996 667899999999997 7999 9999999999998653
Q ss_pred CCCCCccccccc-eeeEEEEeHHHHHhhhcccccCCccce-eeecCCCceeecCCCCccccCceeeccchhhhhhhhhcc
Q 007226 268 FSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGM-VLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNT 345 (612)
Q Consensus 268 ~~dg~~~s~f~~-Ninnl~~~L~~l~~~l~~~~~~~lp~~-ian~Kk~i~y~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~ 345 (612)
+ ++ ...|++ |||||||+|+||+++++. +.||+| |.|+| ++| | .+.+|||++|+|++.+|.
T Consensus 283 f-~~--~~kf~~fNtnn~w~~L~~l~~~~~~---~~l~~~~I~n~k----~~~--g----~kv~q~Et~ig~ai~~f~-- 344 (469)
T PLN02474 283 F-KS--IEKFKIFNTNNLWVNLKAIKRLVEA---DALKMEIIPNPK----EVD--G----VKVLQLETAAGAAIRFFD-- 344 (469)
T ss_pred h-cc--cccceeeeeeeEEEEHHHHHHHhhc---CCCCceeecCCC----CCC--C----eeEEEeHHHHHHHHHhCC--
Confidence 2 22 579998 999999999999999863 457776 54554 444 2 478999999999999884
Q ss_pred ccccCCcceEEEccccceeecccCCCchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHcCcccCcccCCCcccccCC
Q 007226 346 YSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGP 425 (612)
Q Consensus 346 f~~~~~k~~~~~~~R~~~FsPvKN~~~~~~~~~~~~~~~~~~sp~s~~~dl~~~~~~~l~~~g~~v~~~~~~~~~~~~~P 425 (612)
++..++++|. +|+||||+. +|.++++|+|..+..|+..+|.+.- ...|
T Consensus 345 ------~~~~v~VpR~-rF~PVK~~~----------------dll~~rsdly~l~~~~l~~~~~~~~---------~~~p 392 (469)
T PLN02474 345 ------NAIGINVPRS-RFLPVKATS----------------DLLLVQSDLYTLVDGFVIRNKARTN---------PSNP 392 (469)
T ss_pred ------CceEEEEchh-hccCCCCCC----------------CHHHHHHHHHHhccCeEEecCcccC---------CCCC
Confidence 3466888998 599999985 4568889999999999988776421 1346
Q ss_pred CeeEEeCCcccccHHHHhcccCC-CCcCCCcEEEEEeceEEEeceEEEEEEEEEeccCCCCceecCCCcce
Q 007226 426 PYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESI 495 (612)
Q Consensus 426 ~~~v~l~p~~~~~~~~~~~k~~~-~si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~~ 495 (612)
. |.|+|. ++++++|.+||++ |||.++++|+|+|+++|++||+|.|+|+|.|.. |.+...|||..+
T Consensus 393 ~--IeL~~~-f~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~--~~~~~ip~g~~l 458 (469)
T PLN02474 393 S--IELGPE-FKKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKS--GVKLEIPDGAVL 458 (469)
T ss_pred c--EEECcc-cccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCC--CCeeecCCCcEe
Confidence 5 999999 7899999999999 899999999999999999999999999999998 888888998743
No 5
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=3.4e-76 Score=645.20 Aligned_cols=370 Identities=17% Similarity=0.163 Sum_probs=317.6
Q ss_pred hHHHHHHHHhhhhhcC--cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcC--Cc
Q 007226 20 TEYAAQAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQ 95 (612)
Q Consensus 20 ~~~~~~~~~~Gl~~l~--k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g--~~ 95 (612)
++...+++++|+++|+ |+|+|+||||+|||||++.||+ ++||+++ +|+||||++++||++++.++.+++| ..
T Consensus 88 ~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~--ll~I~~~--~gksL~q~~~erI~~l~~~~~~~~~~~~~ 163 (482)
T PTZ00339 88 EKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKG--LLECTPV--KKKTLFQFHCEKVRRLEEMAVAVSGGGDD 163 (482)
T ss_pred HHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCe--EeeecCC--CCccHHHHHHHHHHHHhhhhhcccccccC
Confidence 5666778899999998 5999999999999999999999 9999965 9999999999999999988876664 24
Q ss_pred ceeeEEEecCCCCCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcC
Q 007226 96 CITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG 175 (612)
Q Consensus 96 ~~iPl~IMTS~~~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sG 175 (612)
+.|||+||||+ .||+.|++||++|+|||++++||++|+|+++||++.++|+++++++++++|+|+||||||.||++||
T Consensus 164 ~~Ip~~IMTS~--~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG 241 (482)
T PTZ00339 164 PTIYILVLTSS--FNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCS 241 (482)
T ss_pred CCCCEEEEeCc--chHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCC
Confidence 68999999999 5999999999999999999999999999999999977899999999999999999999999999999
Q ss_pred chhHHHHCCcEEEEEEecCCCcccc-chhhHHHhhhhhhcCC-ceeEEEEeecCCCcccceEEEEEecCCCceecceEEE
Q 007226 176 IFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGK-KLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCI 253 (612)
Q Consensus 176 lLd~l~~~Gikyv~v~~vDN~la~~-Dp~i~~~~G~~~~~~~-~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vV 253 (612)
+|++|+++|++|+||+||||+|+++ ||.| +|+++.++. ++..++ + |+.++|+||++|+ .||+ +.+|
T Consensus 242 ~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~f---lG~~~~~~~~~~~~kv-v-k~~~~EkvG~~~~---~~g~----~~vv 309 (482)
T PTZ00339 242 ELMDIVRKGIKYVQVISIDNILAKVLDPEF---IGLASSFPAHDVLNKC-V-KREDDESVGVFCL---KDYE----WQVV 309 (482)
T ss_pred cHHHHHHcCCEEEEEEecCcccccccCHHH---hHHHHHCCchhheeee-e-cCCCCCceeEEEE---eCCc----ccEE
Confidence 9999999999999999999999997 9976 899999999 888775 5 5678999999998 6888 8999
Q ss_pred EecccCccCcCCCCCCCCCccccccc-eeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCCCCccccCceeec
Q 007226 254 EYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLE 332 (612)
Q Consensus 254 EYsel~~~~~~~~~~~dg~~~s~f~~-Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~g~~~~~~~~rLE 332 (612)
||+|++++.....+ . .++.+.|.+ |||||||+++||+++++......||+|+|.| ||||+|.. ...++++|||
T Consensus 310 EYsEi~~~~~~~~~-~-~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~K--kip~~~~~--~~~png~K~E 383 (482)
T PTZ00339 310 EYTEINERILNNDE-L-LTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARK--KIPYINGP--TDKTMGIKLE 383 (482)
T ss_pred EEeccChhhhhccc-c-cCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeecc--ccCeeCCC--CCCcceeeeh
Confidence 99999998755322 2 224688887 9999999999999987531334699999995 49999943 2457999999
Q ss_pred cchhhhhhhhhccccccCCcceEEEccccceeecccCCCchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHcCcccC
Q 007226 333 CTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLP 412 (612)
Q Consensus 333 ~~Mqd~~~~f~~~f~~~~~k~~~~~~~R~~~FsPvKN~~~~~~~~~~~~~~~~~~sp~s~~~dl~~~~~~~l~~~g~~v~ 412 (612)
.|++|++.+ ..++++.+++|..+|||+||+.+.. . +||+||+.|+++++++||.++|+.+.
T Consensus 384 ~FiFDvf~~--------~~~~~~~ev~R~~eFsPlKNa~g~~-----~------d~p~tar~~l~~~~~~wl~~ag~~~~ 444 (482)
T PTZ00339 384 AFIFDIFRY--------AKNVLILEVDREDEFAPIKNADGAA-----A------DTILNAQKLLLSLHTRWLEAALETVA 444 (482)
T ss_pred hhhhhHHHh--------ccccceeeechhhccccccCCCCCC-----C------CCHHHHHHHHHHHHHHHHHHCCCeee
Confidence 887665544 3468999999999999999998764 2 39999999999999999999998654
Q ss_pred cc-cCCCcccccCCCeeEEeCCc
Q 007226 413 EI-EGNDKYIDDGPPYLILLHPA 434 (612)
Q Consensus 413 ~~-~~~~~~~~~~P~~~v~l~p~ 434 (612)
.. ...+..+|++|. |.++-.
T Consensus 445 ~~~~~~~~~~Eisp~--~sy~ge 465 (482)
T PTZ00339 445 GNPREGLNLCEISPL--VSYGGE 465 (482)
T ss_pred ccccCCCceEEecCc--ceeCCC
Confidence 21 112345778886 666533
No 6
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.8e-75 Score=632.33 Aligned_cols=366 Identities=22% Similarity=0.275 Sum_probs=284.9
Q ss_pred HhhhhhcCcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCC
Q 007226 28 LWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSA 107 (612)
Q Consensus 28 ~~Gl~~l~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~ 107 (612)
..+..+++|+|||+||||||||||+++||| ++||. +|+||||++++||++++ ++|| +.|||+||||+
T Consensus 48 ~~~~~~~~kvavl~LaGGlGTrlG~~~pK~--~~~v~----~~~t~ldl~~~qi~~l~----~~~~--~~iPl~iMtS~- 114 (420)
T PF01704_consen 48 GLEAIALGKVAVLKLAGGLGTRLGCSGPKG--LIPVR----EGKTFLDLIVEQIEALN----KKYG--VDIPLYIMTSF- 114 (420)
T ss_dssp HHHHHHTTCEEEEEEEESBSGCCTESSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--TT-EEEEEEET-
T ss_pred chhHHhhCCEEEEEEcCcccCccCCCCCCc--ceecC----CcccHHHHHHHHHHHHh----cccc--ccceEEEecCc-
Confidence 456777789999999999999999999999 99997 99999999999999998 5677 79999999999
Q ss_pred CCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCC-----CCcccCCCCchHhHHHHhcCchhHHHH
Q 007226 108 KNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF-----APVCKPGGHGAIWKLAHDKGIFKWFHD 182 (612)
Q Consensus 108 ~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~-----~l~~~P~GhGdI~~aL~~sGlLd~l~~ 182 (612)
+||++|++||++ |||++.+ |++|+|+++||++ .+|+++++.+. ..+|+||||||+|.+|++||+||+|++
T Consensus 115 -~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~-~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~ 189 (420)
T PF01704_consen 115 -NTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAID-ADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLA 189 (420)
T ss_dssp -TTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEE-TTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHH
T ss_pred -ccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEe-CCCccccccccccccchhhccCCCCcceehhhhccChHHHHHH
Confidence 699999999999 9999887 9999999999999 56888887554 246999999999999999999999999
Q ss_pred CCcEEEEEEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccC
Q 007226 183 NGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG 262 (612)
Q Consensus 183 ~Gikyv~v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~ 262 (612)
+|++|+||+|+||+++.+||.| +|+++.+++++++++ ++|+.++|++|+||+ .+|+ +++|||+|+|++.
T Consensus 190 ~G~eyifv~nvDNL~a~~Dp~~---lG~~~~~~~~~~~ev-v~Kt~~dek~Gvl~~---~~G~----~~vvEysqip~~~ 258 (420)
T PF01704_consen 190 RGIEYIFVSNVDNLGAVVDPVF---LGYMIEKNADFGMEV-VPKTSPDEKGGVLCR---YDGK----LQVVEYSQIPKEH 258 (420)
T ss_dssp TT--EEEEEETTBTT-TT-HHH---HHHHHHTT-SEEEEE-EE-CSTTTSSEEEEE---ETTE----EEEEEGGGS-HHG
T ss_pred cCCeEEEEEecCCcccccCHHH---HHHHHhccchhheee-eecCCCCCceeEEEE---eCCc----cEEEEeccCCHHH
Confidence 9999999999999444459976 899999999999996 667889999999998 6999 9999999999996
Q ss_pred cCCCCCCCCCccccccc-eeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCCCCccccCceeeccchhhhhhh
Q 007226 263 ITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADN 341 (612)
Q Consensus 263 ~~~~~~~dg~~~s~f~~-Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~g~~~~~~~~rLE~~Mqd~~~~ 341 (612)
..+.+. .+ .|.. ||||+||+|++|+++++. ....||+|++.| +|||+|. .++.+|||++|++.+..
T Consensus 259 ~~~~~~--~~---~~~~FntnNi~~~l~~l~~~~~~-~~~~Lp~h~a~K--ki~~~d~-----~~~~~q~Et~i~~~i~~ 325 (420)
T PF01704_consen 259 MAEFKD--IK---GFLLFNTNNIWFSLDFLKRLLER-DELQLPIHVAKK--KIPYVDN-----GIKVIQFETAIGFAIFQ 325 (420)
T ss_dssp HHHHTS--TT---TSBEEEEEEEEEEHHHHHHHHHT-TTCCS-EEEEEE--ESSEECT-----EEEEEEEECGGGGGGGG
T ss_pred HHhhhc--cc---cceEEEeceeeEEHHHHHHHHHh-ccccCccEEcch--hcccccC-----CccEEeehhhhhchHhh
Confidence 553222 22 3554 999999999999999986 567899999774 4999983 35899999999988877
Q ss_pred hhccccccCCcceEEEccccceeecccCCCchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHcCcccCcccCCCccc
Q 007226 342 FLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYI 421 (612)
Q Consensus 342 f~~~f~~~~~k~~~~~~~R~~~FsPvKN~~~~~~~~~~~~~~~~~~sp~s~~~dl~~~~~~~l~~~g~~v~~~~~~~~~~ 421 (612)
|. +...++++| .+|+||||+.+.... ++ |+|.. ..|.....+ ....
T Consensus 326 f~--------~~~~v~V~R-~rF~PvKn~~dLl~~--~S--------------d~y~~------~~~~~~~~~---~~~~ 371 (420)
T PF01704_consen 326 FD--------NSFAVEVPR-DRFAPVKNTSDLLLV--RS--------------DLYDL------DDGTLVRNP---LRAF 371 (420)
T ss_dssp CT--------SEEEEEE-G-GG--B-SSHHHHHHH--HS--------------TTEEE------ETTEEEEHC---CHCS
T ss_pred cc--------CcEEEEEcH-HHcCCccccCcceee--cc--------------ceecc------ccceeeecc---cccC
Confidence 64 234458999 899999997443211 11 11111 112211111 0111
Q ss_pred ccCCCeeEEeCCcccccHHHHhcccCC-CCcCCCcEEEEEeceEEEeceEEE
Q 007226 422 DDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLD 472 (612)
Q Consensus 422 ~~~P~~~v~l~p~~~~~~~~~~~k~~~-~si~~~s~L~veG~~~~~~~v~ld 472 (612)
..-| +|.|++. ++++++|.+||+. |||.++++|+|.|+++|++||.|+
T Consensus 372 ~~~p--~i~lg~~-f~~v~~~~~r~~~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 372 HTRP--LIKLGDH-FKKVDDFEKRFPSIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp SCHH--EEEECGG-GSSHHHHHHHBSSS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred CCCC--eeccCcc-cCchHHhhhhcCCCCCcccCCcceEecceEECCCcEeC
Confidence 1224 5999987 5889999999998 899999999999999999999985
No 7
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=3.7e-73 Score=597.36 Aligned_cols=315 Identities=23% Similarity=0.308 Sum_probs=283.2
Q ss_pred HHHHhhhhhcC--cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEE
Q 007226 25 QAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAI 102 (612)
Q Consensus 25 ~~~~~Gl~~l~--k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~I 102 (612)
+++++|+++|+ ++|+|+||||+|||||+++||+ ++|++.+ +|+||||+++++|++++.++.+.+|+++.|||+|
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~--l~pv~~~--~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~i 77 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKG--MFPVGLP--SKKSLFQLQAERILKLQELAGEASGKKVPIPWYI 77 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeE--EEEecCC--CCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEE
Confidence 45678999998 9999999999999999999999 9999866 8999999999999999999888888888999999
Q ss_pred ecCCCCCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHH
Q 007226 103 MTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD 182 (612)
Q Consensus 103 MTS~~~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~ 182 (612)
|||+ +||++|++||++|+|||+++++|++|.|+++||++ .+|+++++++++++|+|+||||+|.+|++||+|++|++
T Consensus 78 mtS~--~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~ 154 (323)
T cd04193 78 MTSE--ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKK 154 (323)
T ss_pred EcCh--hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHh
Confidence 9998 59999999999999999999999999999999998 67999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecCCCcccc-chhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCcc
Q 007226 183 NGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 261 (612)
Q Consensus 183 ~Gikyv~v~~vDN~la~~-Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~ 261 (612)
+|+||++|+||||+|+++ ||.| +|+++.+++++++++ ++|+.++|++|++|. .||+ +++|||+|+|++
T Consensus 155 ~G~~yi~v~~vDN~L~~~~Dp~~---lG~~~~~~~~~~~kv-v~k~~~~ekvG~l~~---~~g~----~~vvEysel~~~ 223 (323)
T cd04193 155 RGIKYIHVYSVDNILVKVADPVF---IGFCISKGADVGAKV-VRKRYPTEKVGVVVL---VDGK----PQVVEYSEISDE 223 (323)
T ss_pred CCCEEEEEEecCcccccccCHHH---hHHHHHcCCceEEEE-EECCCCCCceeEEEE---ECCe----EEEEEeecCCHH
Confidence 999999999999999886 9966 899999999999996 667789999999997 6999 899999999999
Q ss_pred CcCCCCCCCCCccccccc-eeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCCCCc---cccCceeeccchhh
Q 007226 262 GITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQN 337 (612)
Q Consensus 262 ~~~~~~~~dg~~~s~f~~-Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~g~~---~~~~~~rLE~~Mqd 337 (612)
.+... .++|. ..|.. |||+|+|+|+||+++++. ....||+|++. |+|||+|.+|.. ..++++|||+||+|
T Consensus 224 ~~~~~-~~~g~--l~f~~~ni~~~~fsl~fl~~~~~~-~~~~l~~h~a~--Kki~~~d~~~~~~~p~~~n~~klE~fifd 297 (323)
T cd04193 224 LAEKR-DADGE--LQYNAGNIANHFFSLDFLEKAAEM-EEPSLPYHIAK--KKIPYVDLEGGLVKPDEPNGIKLELFIFD 297 (323)
T ss_pred HHhcc-CcCCc--EecccchHhhheeCHHHHHHHHhh-ccccCCceEec--cccCcccCcCcEeccCCCcEEEeHHHHHH
Confidence 86642 33454 46665 999999999999999875 44579999977 459999976542 34678999999998
Q ss_pred hhhhhhccccccCCcceEEEccccceeecccCCC
Q 007226 338 IADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT 371 (612)
Q Consensus 338 ~~~~f~~~f~~~~~k~~~~~~~R~~~FsPvKN~~ 371 (612)
++..+ .++..++++|..+|+||||++
T Consensus 298 ~~~~~--------~~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 298 VFPFA--------KNFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred HHHhC--------CceEEEEEChhhccccCcCCC
Confidence 88775 367889999999999999974
No 8
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=2.2e-71 Score=576.49 Aligned_cols=287 Identities=20% Similarity=0.258 Sum_probs=254.6
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHH
Q 007226 34 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 113 (612)
Q Consensus 34 l~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~ 113 (612)
|+|+|+|+||||||||||+++||| ++|+. +|+||||++++||++++ +.+| +.|||+||||+ +||++
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg--~~~v~----~~~s~l~l~~~~i~~l~----~~~~--~~iPl~iMtS~--~T~~~ 66 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKS--LIEVR----DGKTFLDLTVQQIEHLN----KTYG--VDVPLVLMNSF--NTDED 66 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--cchHH
Confidence 579999999999999999999999 99995 99999999999999999 5667 69999999999 69999
Q ss_pred HHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeee---cCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEE
Q 007226 114 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 190 (612)
Q Consensus 114 T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~---~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v 190 (612)
|++||++|++ +++||++|+|+++||++ .+|+++++ ++++++|+|+||||+|.+|++||+|++|+++|+||++|
T Consensus 67 T~~~l~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v 142 (300)
T cd00897 67 TKKILKKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFV 142 (300)
T ss_pred HHHHHHHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 9999999886 78999999999999999 56888887 88999999999999999999999999999999999999
Q ss_pred EecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCC
Q 007226 191 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 270 (612)
Q Consensus 191 ~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~d 270 (612)
+||||+++.+||.| +|+++.+++++.+++ ++|+.++|++|++|. .||+ +++|||+|+|++.+.+ +.
T Consensus 143 ~nvDNL~a~~Dp~~---lg~~~~~~~~~~~ev-v~Kt~~dek~G~l~~---~~g~----~~vvEyse~p~e~~~~--~~- 208 (300)
T cd00897 143 SNIDNLGATVDLRI---LNHMVDNKAEYIMEV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHVDE--FK- 208 (300)
T ss_pred EecccccccCCHHH---HHHHHhcCCceEEEE-eecCCCCCcccEEEE---ECCE----EEEEEeccCCHHHHHh--hc-
Confidence 99999777679976 899999999999996 778899999999997 6999 9999999999997653 21
Q ss_pred CCccccccc-eeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCCCCccccCceeeccchhhhhhhhhcccccc
Q 007226 271 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 349 (612)
Q Consensus 271 g~~~s~f~~-Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~f~~~ 349 (612)
+ ...|++ |||||||+|+||+++++. ....||+|++.|| | +++ ++++|||++|+|++..|.
T Consensus 209 ~--~~~~~~~nt~n~~~~l~~L~~~~~~-~~~~lp~h~~~K~--v---~p~-----~~~~qlE~~i~da~~~~~------ 269 (300)
T cd00897 209 S--IKKFKIFNTNNLWVNLKAVKRVVEE-NALDLEIIVNPKT--V---DGG-----LNVIQLETAVGAAIKNFD------ 269 (300)
T ss_pred C--cccceEEEEeEEEEEHHHHHHHHHh-ccCCCCeeecccc--c---CCC-----CCEEEeHhHhhhHHHhCC------
Confidence 2 457998 999999999999999864 4556999996643 3 332 689999999999888764
Q ss_pred CCcceEEEccccceeecccCCCchh
Q 007226 350 CYKGVEDDLDTFMVYNERRRVTSSA 374 (612)
Q Consensus 350 ~~k~~~~~~~R~~~FsPvKN~~~~~ 374 (612)
++.+++++|. +|+||||+.+..
T Consensus 270 --~~~~~eV~R~-rF~PvKn~~dll 291 (300)
T cd00897 270 --NALGVNVPRS-RFLPVKTTSDLL 291 (300)
T ss_pred --CcEEEEEChh-hcCCCCChHHHH
Confidence 3567889998 699999987654
No 9
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4.1e-69 Score=575.42 Aligned_cols=362 Identities=18% Similarity=0.219 Sum_probs=314.5
Q ss_pred HHHHHHhhhhhcC--cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeE
Q 007226 23 AAQAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPV 100 (612)
Q Consensus 23 ~~~~~~~Gl~~l~--k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl 100 (612)
..+.+..|++.|+ ++|++++|||||||||+++||+ |+|++++ +|+||||+++++|+++|.+|.+..+.++.|||
T Consensus 82 ~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg--~~~~G~~--~~~slf~~qae~il~lq~~a~~~~~~~~~I~w 157 (477)
T KOG2388|consen 82 VDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKG--CYPIGLP--SGKSLFQIQAERILKLQELASMAVSDGVDIPW 157 (477)
T ss_pred hhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcc--eeecCCc--cccchhhhhHHHHHHHHHHHhhhhccCCceEE
Confidence 3335667999997 8999999999999999999999 9999998 89999999999999999999888776689999
Q ss_pred EEecCCCCCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHH
Q 007226 101 AIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWF 180 (612)
Q Consensus 101 ~IMTS~~~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l 180 (612)
|||||. .|++.|++||+.|+|||+.++||+||+|+++||++ .+|+++++.+.+++++|+|||++|.|+.++ |++|
T Consensus 158 ~ImtS~--~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm 232 (477)
T KOG2388|consen 158 YIMTSA--FTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDM 232 (477)
T ss_pred EEecCC--CccHHhHhHHhhcCCCCCChhHeeeeecccccccc-cCCceeccCccchhcCCCCCcHHHHHHHhh--hhHH
Confidence 999999 59999999999999999999999999999999999 568899999999999999999999999999 9999
Q ss_pred HHCCcEEEEEEecCCCcccc-chhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCC-CceecceEEEEeccc
Q 007226 181 HDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEF 258 (612)
Q Consensus 181 ~~~Gikyv~v~~vDN~la~~-Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~d-G~~~~~~~vVEYsel 258 (612)
.++|++|+|||||||+|+++ ||++ +|+++.++++++.++ |+|.++.|.+|++|. .+ |. ++||||||+
T Consensus 233 ~~rgi~~~hiy~VdnvL~k~aDP~f---iG~~it~~~d~~~k~-V~k~~p~E~vG~~~~---~~~G~----~~vvEYsEi 301 (477)
T KOG2388|consen 233 AARGIFYDHIYCVDNVLLKVADPVF---IGFSITKEADVAAKV-VPKINPGEVVGIVAL---KGQGT----PLVVEYSEL 301 (477)
T ss_pred HhhcccEEEEEEecceeeEecccce---eeEEeechhhHhhhh-ccccCCCCceEEEEe---cCCCc----eeEEEeccc
Confidence 99999999999999999998 9966 999999999999996 778889999999998 45 87 999999999
Q ss_pred CccCcCCCCCCCCCccccccceeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCCCCcc---ccCceeeccch
Q 007226 259 DKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTM 335 (612)
Q Consensus 259 ~~~~~~~~~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~g~~~---~~~~~rLE~~M 335 (612)
+++.+.. ...+++..+.+++|||||+|+++||+++... ....||+|+|.+| |||+|.+|... -++++++|.|+
T Consensus 302 ~~~~a~~-~~~d~g~l~~~agnI~nh~ft~dFLkk~~~~-~~~~lp~H~a~kK--ip~~~~~g~~~kP~kpnGik~E~fi 377 (477)
T KOG2388|consen 302 DAELAKA-KAPDGGRLLFNAGNICNHFFTLDFLKKVTRA-SVPLLPYHKAEKK--IPYVDSTGKLVKPTKPNGIKLEQFI 377 (477)
T ss_pred CHHHHhh-cccccCccccCCccHHHHHHhhHHHHHhhhc-ccccchhhhhhcc--ccccccCCcccCCCCCCceeEEeee
Confidence 9997653 4556433455556999999999999999875 5666899999954 99999865432 46789999776
Q ss_pred hhhhhhhhccccccCCcceEEEccccceeecccCCCchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHcCcccCccc
Q 007226 336 QNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE 415 (612)
Q Consensus 336 qd~~~~f~~~f~~~~~k~~~~~~~R~~~FsPvKN~~~~~~~~~~~~~~~~~~sp~s~~~dl~~~~~~~l~~~g~~v~~~~ 415 (612)
|++|+. ..++++.+++|..+|||+||...+. .+||+||+.++++.|..|+.++|+.+...
T Consensus 378 ---fdvf~~-----~k~f~~meV~Re~efSPlKng~~~~-----------~D~p~T~~~~~l~~h~~wi~~~g~~f~~~- 437 (477)
T KOG2388|consen 378 ---FDVFPS-----AKKFGLMEVPREEEFSPLKNGGKSS-----------TDNPSTARIALLRLHIRWIEKAGGIFSDA- 437 (477)
T ss_pred ---eeeccc-----ccceeEEecchhhhcCccccCCCCC-----------CCChhHHHHHHHHhhhhehhccCcEEecC-
Confidence 455541 3578999999999999999987653 23999999999999999999999877532
Q ss_pred CCCcccccCCCeeEEeC
Q 007226 416 GNDKYIDDGPPYLILLH 432 (612)
Q Consensus 416 ~~~~~~~~~P~~~v~l~ 432 (612)
...++++|- |...
T Consensus 438 --~~~~evs~~--vsy~ 450 (477)
T KOG2388|consen 438 --EAVVEVSPL--VSYA 450 (477)
T ss_pred --cceEEecce--eeec
Confidence 244567774 5543
No 10
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-67 Score=545.59 Aligned_cols=383 Identities=19% Similarity=0.253 Sum_probs=322.9
Q ss_pred HhhhhhcCcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCC
Q 007226 28 LWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSA 107 (612)
Q Consensus 28 ~~Gl~~l~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~ 107 (612)
..+.+.|+|+|+|+|+||+||.||+.+||+ +++|+ +|.||||+.++||+.|+ ++|+ +++||++|||+
T Consensus 95 ~~~~~~L~KLavlKLNGGlGttmGc~gPKS--~ieVR----~g~tFLDL~V~QIe~LN----~~Y~--~dVPlvLMNSf- 161 (498)
T KOG2638|consen 95 ELSKSLLNKLAVLKLNGGLGTTMGCKGPKS--VIEVR----DGLTFLDLTVRQIENLN----KTYN--VDVPLVLMNSF- 161 (498)
T ss_pred hhHHHhhhheEEEEecCCcCCccccCCCce--eEEEc----CCCchhHHHHHHHHHHH----hhcC--CCCCEEEeccc-
Confidence 457788999999999999999999999999 99999 99999999999999998 7888 79999999999
Q ss_pred CCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeee----cCCCCcccCCCCchHhHHHHhcCchhHHHHC
Q 007226 108 KNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVM----RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDN 183 (612)
Q Consensus 108 ~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~----~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~ 183 (612)
+|+++|.+++++|.+. +-+|+.|.|+++|+++.++ .++.+ +...-+|+||||||+|.+|+.||+||+|+++
T Consensus 162 -nTdedT~kil~ky~~~---kv~i~TF~QS~~PRi~~et-lLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaq 236 (498)
T KOG2638|consen 162 -NTDEDTQKILKKYAGS---KVDIKTFNQSKYPRIDKET-LLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQ 236 (498)
T ss_pred -ccchHHHHHHHHhcCC---ceeEEEeccccCCcccccc-ccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhC
Confidence 8999999999998864 5689999999999999654 44443 3456899999999999999999999999999
Q ss_pred CcEEEEEEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCc
Q 007226 184 GRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGI 263 (612)
Q Consensus 184 Gikyv~v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~ 263 (612)
|++|+||+|+||++|.+|..| +.+.+..+.++.|++ +.|+.++.|+|+|+. .+|+ +.++||+|+|+++.
T Consensus 237 GkEylFVSNiDNLGAtvDL~I---Ln~~i~~~~ey~MEv-TdKT~aDvKgGtLi~---y~G~----lrlLEiaQVP~ehv 305 (498)
T KOG2638|consen 237 GKEYLFVSNIDNLGATVDLNI---LNHVINNNIEYLMEV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHV 305 (498)
T ss_pred CceEEEEeccccccceeeHHH---HHHHhcCCCceEEEe-cccchhhcccceEEe---ecCE----EEEEEeccCChhHh
Confidence 999999999999999999988 577788899999995 778999999999997 8999 99999999999986
Q ss_pred CCCCCCCCCccccccc-eeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCCCCccccCceeeccchhhhhhhh
Q 007226 264 TRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNF 342 (612)
Q Consensus 264 ~~~~~~dg~~~s~f~~-Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~g~~~~~~~~rLE~~Mqd~~~~f 342 (612)
++ + ...+.|.. ||||+|++|.+++++++. ....|+ .|.|+| ++|. ...++||||+++++++.|
T Consensus 306 ~e--F---kS~kkFkifNTNNlWinLkavKrlve~-~~l~me-Ii~N~k----ti~~-----~~~viQleTa~GaaIk~F 369 (498)
T KOG2638|consen 306 DE--F---KSIKKFKIFNTNNLWINLKAVKKLVEE-NALNME-IIVNPK----TIDR-----GIEVIQLETAAGAAIKFF 369 (498)
T ss_pred hh--h---ccceeEEEeccCCeEEehHHHHHHhhc-Ccccce-eecChh----hccC-----CceEEEEhhhhhHHHHhC
Confidence 53 2 23689998 999999999999999986 556666 666987 5653 247899999999999998
Q ss_pred hccccccCCcceEEEccccceeecccCCCchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHcCcccCcccCCCcccc
Q 007226 343 LNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYID 422 (612)
Q Consensus 343 ~~~f~~~~~k~~~~~~~R~~~FsPvKN~~~~~~~~~~~~~~~~~~sp~s~~~dl~~~~~~~l~~~g~~v~~~~~~~~~~~ 422 (612)
+ .+ ..+.|+|. +|.|||++.+.... + ++||....- -.++.+ .+...
T Consensus 370 ~------na--~gv~VpRs-RFlPVKt~sDLlLv--~--------------S~Ly~ld~G-----sl~l~~----~r~~~ 415 (498)
T KOG2638|consen 370 D------NA--IGVNVPRS-RFLPVKTCSDLLLV--M--------------SNLYDLDNG-----SLTLSP----SRFGP 415 (498)
T ss_pred C------Cc--eeeecccc-ccccccccccceee--e--------------cceeeccCC-----eEEech----hhcCC
Confidence 6 23 33556654 57999997655422 1 344443321 122321 12222
Q ss_pred cCCCeeEEeCCcccccHHHHhcccCC-CCcCCCcEEEEEeceEEEeceEEEEEEEEEeccCCCCceecCCCcc
Q 007226 423 DGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGES 494 (612)
Q Consensus 423 ~~P~~~v~l~p~~~~~~~~~~~k~~~-~si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~ 494 (612)
..| +|.|+++ ++++++|..||++ |+|.++++|+|.|+++|++||.|.|+|+|.|+. |..-..|+|..
T Consensus 416 t~P--~vkLg~~-F~kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~--~~~i~IP~gsV 483 (498)
T KOG2638|consen 416 TPP--LVKLGSE-FKKVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIANE--GDRIDIPDGSV 483 (498)
T ss_pred CCC--eeecchh-hhHHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEecC--CCeeecCCCCe
Confidence 335 5999999 7889999999999 899999999999999999999999999999999 88888999973
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=504.31 Aligned_cols=331 Identities=21% Similarity=0.245 Sum_probs=262.4
Q ss_pred Hhhhhh--cCcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecC
Q 007226 28 LWGIEG--LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTS 105 (612)
Q Consensus 28 ~~Gl~~--l~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS 105 (612)
.+|+.. ++++|+|+||||||||||+++||+ +++|+ +|+||||+++|||+.++ ++|+ ++|||+||||
T Consensus 95 ~~~l~~~~~~klAvl~LaGGqGtrlG~~gPKg--l~~V~----~gks~~dl~~~qIk~ln----~~~~--~~vP~~iMtS 162 (472)
T COG4284 95 GWGLLKIKLGKLAVLKLAGGQGTRLGCDGPKG--LFEVK----DGKSLFDLQAEQIKYLN----RQYN--VDVPLYIMTS 162 (472)
T ss_pred hhhhhhhhcCceEEEEecCCcccccccCCCce--eEEec----CCCcHHHHHHHHHHHHH----HHhC--CCCCEEEEec
Confidence 346776 779999999999999999999999 99998 99999999999999999 5666 7999999999
Q ss_pred CCCCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCC-CcccCCCCchHhHHHHhcCchhHHHHCC
Q 007226 106 SAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFA-PVCKPGGHGAIWKLAHDKGIFKWFHDNG 184 (612)
Q Consensus 106 ~~~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~-l~~~P~GhGdI~~aL~~sGlLd~l~~~G 184 (612)
. |++.|..+|+.++|||+++.+|++|+|+.+||+..++|++++.+.++ ++|.|+||||+|.+|+.||++++|.++|
T Consensus 163 ~---nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G 239 (472)
T COG4284 163 L---NTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQG 239 (472)
T ss_pred C---CcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcC
Confidence 6 99999999999999999999999999999996666889999976666 9999999999999999999999999999
Q ss_pred cEEEEEEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcC
Q 007226 185 RKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT 264 (612)
Q Consensus 185 ikyv~v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~ 264 (612)
++|++|+||||+++.+||.| +|+++..+.++.+++ ++|+.|+|+||+|+. .||+ ++++||+|+|+++..
T Consensus 240 ~e~lfV~nIDNL~~~vD~~~---lg~~~~~~~e~~~e~-t~Kt~a~ekvG~Lv~---~~g~----~rllEysev~~~~~~ 308 (472)
T COG4284 240 IEYLFVSNIDNLGATVDLKF---LGFMAETNYEYLMET-TDKTKADEKVGILVT---YDGK----LRLLEYSEVPNEHRE 308 (472)
T ss_pred ceEEEEecccccccccCHHH---HHHHHhcCcceeEEE-eecccccccceEEEE---eCCc----eEEEEEecCChhHhh
Confidence 99999999999555569977 899999999999997 778899999999997 7999 999999999998765
Q ss_pred CCCCCCCCccccccc-eeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCC---CCccccCceeecc-ch-hhh
Q 007226 265 RGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNF---GDTHSVPGGRLEC-TM-QNI 338 (612)
Q Consensus 265 ~~~~~dg~~~s~f~~-Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~---g~~~~~~~~rLE~-~M-qd~ 338 (612)
+.. .+ ..+.. |+||+|+.+-.+..+.+. ....||.|.+.| +||+.|.. .+...+...++|. |+ +|.
T Consensus 309 ~~~-s~----~~~~~~n~Nni~l~~~~~~~l~~~-~~l~Lpi~~a~K--ki~~~~~~~~~~t~i~~~i~kfe~~FI~fDl 380 (472)
T COG4284 309 EFT-SD----GKLKYFNTNNIWLHLFSVKFLKEA-AYLNLPIHKAIK--KIPQLDNIIQLTTAIGKNISKFENEFIPFDL 380 (472)
T ss_pred hhc-cc----cceeeeccccceeehhHHHHHHhh-hccCCcchhhhc--ccCccccceeeccccccchhhccccccceee
Confidence 321 12 23444 555444444444444443 345799999884 48888711 1112356678884 65 444
Q ss_pred hhhhhccccccCCcceEEEccccceeecccCCCchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHcCcc
Q 007226 339 ADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIK 410 (612)
Q Consensus 339 ~~~f~~~f~~~~~k~~~~~~~R~~~FsPvKN~~~~~~~~~~~~~~~~~~sp~s~~~dl~~~~~~~l~~~g~~ 410 (612)
+.+- +..+.++..+||+-+|+|+||-.+.. . .+++++..++-+... |++..+..
T Consensus 381 F~~~------s~~~~~~~~vpR~~~f~Plkn~~~~~-----~------~~~~~~~~~~~~~~~-~~e~~~~~ 434 (472)
T COG4284 381 FLYK------SDENGGLLLVPRFGEFSPLKNLEGSH-----F------DNVETFTCGIPRIPL-ILELEGLT 434 (472)
T ss_pred eEEE------ecCCCceEeccccCCCCchhhccCCC-----C------CcHHhhhcccccccc-hhhhccce
Confidence 3332 12567889999999999999987653 1 155666554433322 55444443
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=8.6e-59 Score=476.96 Aligned_cols=260 Identities=18% Similarity=0.165 Sum_probs=225.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
+|+|+||||+|||||++.||+ ++|++++ +|+||||+++++|++++.++. .+ +.|||+||||+ +||+.|++
T Consensus 1 va~viLaGG~GtRLg~~~PK~--~~~i~~~--~gk~~l~~~~~~i~~~~~~~~--~~--~~Ip~~imts~--~t~~~t~~ 70 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKS--STDVGLP--SGQCFLQLIGEKILTLQEIDL--YS--CKIPEQLMNSK--YTHEKTQC 70 (266)
T ss_pred CEEEEECCCCccccCCCCCce--eeeecCC--CCCcHHHHHHHHHHHHHHHhh--cC--CCCCEEEEcCc--hhHHHHHH
Confidence 589999999999999999999 9999977 999999999999999996542 13 68999999999 69999999
Q ss_pred HHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCCC
Q 007226 117 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 196 (612)
Q Consensus 117 ~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN~ 196 (612)
||++|+ ++.+++++|+|+++||+++ +|...++++++++|+|+||||+|++|+.+|+|++|+++|++|++|+|+||+
T Consensus 71 ~l~~~~---~~~~~v~~f~Q~~~P~~~~-~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~ 146 (266)
T cd04180 71 YFEKIN---QKNSYVITFMQGKLPLKND-DDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNL 146 (266)
T ss_pred HHHHcC---CCCCceEEEEeCCceEEeC-CCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCcc
Confidence 999998 5789999999999999995 577778888899999999999999999999999999999999999999999
Q ss_pred cccc-chhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCC-CceecceEEEEecccCccCcCCC----CCCC
Q 007226 197 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRG----PFSS 270 (612)
Q Consensus 197 la~~-Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~d-G~~~~~~~vVEYsel~~~~~~~~----~~~d 270 (612)
|+++ ||.+ +|++...+.++.+++ ++|+.+++++|++|. .+ |+ +++|||+|+|++.+.++ +.++
T Consensus 147 la~v~DP~~---lG~~~~~~~~~~~kv-v~K~~~d~k~G~~~~---~~~g~----~~~vEyse~~~~~~~~~~~~~~~~~ 215 (266)
T cd04180 147 LVKVADPLF---IGIAIQNRKAINQKV-VPKTRNEESGGYRIA---NINGR----VQLLEYDQIKKLLKQKMVNNQIPKD 215 (266)
T ss_pred CccccCHHH---HHHHHHcCCCEEEEE-EECCCCCCeEEEEEE---ecCCC----EEEEEeccCCHHHHhccccccCcCC
Confidence 9999 9976 899999999999997 556789999999997 45 88 99999999999865432 2222
Q ss_pred CCccccccceeeEEEEeHHHHHhhhcccccCCccceeeecCCCceeecCCCCccccCceeeccchhhhhhhhhccccccC
Q 007226 271 NGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRC 350 (612)
Q Consensus 271 g~~~s~f~~Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~Kk~i~y~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~f~~~~ 350 (612)
.+..+.+++|||||||+|+||+++++ |++..|.
T Consensus 216 ~~~~~~~~~n~~~~~~~l~~l~~~~~----------------------------------------d~~~~~~------- 248 (266)
T cd04180 216 IDDAPFFLFNTNNLINFLVEFKDRVD----------------------------------------DIIEFTD------- 248 (266)
T ss_pred CCceeeccceEEEEEEEHHHHHHHHH----------------------------------------HHHhccC-------
Confidence 33356666799999999999999873 2333331
Q ss_pred CcceEEEccccceeecccC
Q 007226 351 YKGVEDDLDTFMVYNERRR 369 (612)
Q Consensus 351 ~k~~~~~~~R~~~FsPvKN 369 (612)
++..++++|..+|+||||
T Consensus 249 -~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 249 -DIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred -ceEEEEeCchhccccCCC
Confidence 345688999999999998
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=0.00091 Score=73.03 Aligned_cols=187 Identities=14% Similarity=0.092 Sum_probs=129.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.+.+|+||-|+||||-.+-||. +=|+ .||+.++..++....+.- =-+++..+. -.+..+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKV--LH~v-----aGkpMl~hVi~~a~~l~~-----------~~i~vVvGh---~ae~V~ 60 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKV--LHPV-----AGKPMLEHVIDAARALGP-----------DDIVVVVGH---GAEQVR 60 (460)
T ss_pred CceEEEEecCCCccccCCCccc--chhc-----cCccHHHHHHHHHhhcCc-----------ceEEEEEcC---CHHHHH
Confidence 4678999999999999999998 6665 899999999999888741 123445555 677888
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcE-EEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK-GATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gik-yv~v~~vD 194 (612)
+.+.+.. ++.++.|.. |-|-|. .-+. ....+..+++ .+.|.+-|
T Consensus 61 ~~~~~~~-------~v~~v~Q~e----------------------qlGTgH--AV~~----a~~~l~~~~~g~vLVl~GD 105 (460)
T COG1207 61 EALAERD-------DVEFVLQEE----------------------QLGTGH--AVLQ----ALPALADDYDGDVLVLYGD 105 (460)
T ss_pred HHhcccc-------CceEEEecc----------------------cCChHH--HHHh----hhhhhhcCCCCcEEEEeCC
Confidence 8777532 566788865 112221 2221 1223445555 78899999
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
=+|...+. +-.++......+++....+ .+-+.| .+-|.+++ +.+|+ ...+||.-+.+++...
T Consensus 106 ~PLit~~T-L~~L~~~~~~~~~~~tvLt-~~~~dP-~GYGRIvr--~~~g~---V~~IVE~KDA~~eek~---------- 167 (460)
T COG1207 106 VPLITAET-LEELLAAHPAHGAAATVLT-AELDDP-TGYGRIVR--DGNGE---VTAIVEEKDASEEEKQ---------- 167 (460)
T ss_pred cccCCHHH-HHHHHHhhhhcCCceEEEE-EEcCCC-CCcceEEE--cCCCc---EEEEEEcCCCCHHHhc----------
Confidence 99998743 3246777777788888886 333444 47888876 35666 4679998877766421
Q ss_pred ccccceeeEEEEeHHHHHhhhcc
Q 007226 275 ADFPANTNILYVDLASAELVGSS 297 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l~~~l~~ 297 (612)
.--.|+..+.|+-..|.+.|.+
T Consensus 168 -I~eiNtGiy~f~~~~L~~~L~~ 189 (460)
T COG1207 168 -IKEINTGIYAFDGAALLRALPK 189 (460)
T ss_pred -CcEEeeeEEEEcHHHHHHHHHH
Confidence 1114999999999999998864
No 14
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.90 E-value=0.00066 Score=73.19 Aligned_cols=196 Identities=11% Similarity=0.090 Sum_probs=115.3
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeCccCCCCCC-cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCc
Q 007226 35 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 110 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gk-s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T 110 (612)
+++-.|+||||.||||.- +.||. ++|+ .|+ ++++++++.+.+. | + -.++|.|.. .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~--llpv-----~gk~pli~~~l~~l~~~--------G--i-~~i~iv~~~---~ 60 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKP--AVPF-----GGKYRIIDFTLSNCANS--------G--I-DTVGVLTQY---Q 60 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccc--eeee-----CCceeehhHHHHHHHhC--------C--C-CEEEEEecC---C
Confidence 467889999999999986 78999 9888 588 7999999988654 3 1 257888887 7
Q ss_pred hHHHHHHHHHcccCCCCCCc--eEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEE
Q 007226 111 HERITSLCERLRWFGRGQSS--FQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKG 187 (612)
Q Consensus 111 ~~~T~~~le~~~~FGl~~~q--V~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Giky 187 (612)
.+...++|.+...|+++..+ +. +.| |... . .-.-.|-|.|+ ++.++ +.+....-++
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~-i~~---~~~~-~----------~~~~~~~Gta~al~~a~------~~l~~~~~~~ 119 (380)
T PRK05293 61 PLELNNHIGIGSPWDLDRINGGVT-ILP---PYSE-S----------EGGKWYKGTAHAIYQNI------DYIDQYDPEY 119 (380)
T ss_pred HHHHHHHHhCCCcccccCCCCCEE-EeC---Cccc-C----------CCCcccCCcHHHHHHHH------HHHHhCCCCE
Confidence 88899999876666654321 21 111 0000 0 00011345543 44333 2232222367
Q ss_pred EEEEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecC-CCcccceEEEEEecCCCceecceEEEEecccCccCcCCC
Q 007226 188 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 266 (612)
Q Consensus 188 v~v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~-~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~ 266 (612)
+.|.+.|++ ...| +..++-.+...++++.+.+ .+.+ ....+-|++.. ..+|+ +.++.|=|...
T Consensus 120 ~lV~~gD~l-~~~d--~~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~g~------V~~~~eKp~~~---- 183 (380)
T PRK05293 120 VLILSGDHI-YKMD--YDKMLDYHKEKEADVTIAV-IEVPWEEASRFGIMNT--DENMR------IVEFEEKPKNP---- 183 (380)
T ss_pred EEEecCCEE-EcCC--HHHHHHHHHhcCCCEEEEE-EEcchhhccccCEEEE--CCCCc------EEEEEeCCCCC----
Confidence 889999984 3333 3344555555666654443 2221 22335677754 13454 44454433210
Q ss_pred CCCCCCccccccceeeEEEEeHHHHHhhhc
Q 007226 267 PFSSNGLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 267 ~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
. ....|+...+|+-+.+.+.+.
T Consensus 184 ----~----~~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 184 ----K----SNLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred ----C----cceeeeEEEEEcHHHHHHHHH
Confidence 0 112499999999888877654
No 15
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.70 E-value=0.0023 Score=70.12 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=117.5
Q ss_pred hcCcEEEEEecCCccccCC---CCCCCCCceeeCccCCCCCC-cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCC
Q 007226 33 GLPELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 108 (612)
Q Consensus 33 ~l~k~avvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gk-s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~ 108 (612)
+..++..|+||||.||||. .+.||. ++|+ .|+ +++++.++.+... | .--++|.|..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~--llPv-----~gk~plI~~~L~~l~~~--------G---i~~i~iv~~~-- 61 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKP--AVPF-----GGSYRLIDFVLSNLVNS--------G---YLRIYVLTQY-- 61 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCccc--ceee-----CCcceEhHHHHHHHHHC--------C---CCEEEEEecc--
Confidence 4568899999999999999 889999 9998 577 9999998887664 3 2256888887
Q ss_pred CchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchH-hHHHHhcCchhHHHHCCcEE
Q 007226 109 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGRKG 187 (612)
Q Consensus 109 ~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI-~~aL~~sGlLd~l~~~Giky 187 (612)
..+...++|.+. +.+....+.++.. .|.-. . .-.-.|-|-|+- +.++ +.+....-++
T Consensus 62 -~~~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~-~----------~~~~~~lGta~al~~a~------~~i~~~~~~~ 119 (407)
T PRK00844 62 -KSHSLDRHISQT--WRLSGLLGNYITP--VPAQQ-R----------LGKRWYLGSADAIYQSL------NLIEDEDPDY 119 (407)
T ss_pred -CHHHHHHHHHhC--cCccccCCCeEEE--CCccc-C----------CCCCcccCCHHHHHHHH------HHHHhcCCCE
Confidence 788999999742 2221111111110 01000 0 001124566553 3333 3343434468
Q ss_pred EEEEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecC-CCcccceEEEEEecCCCceecceEEEEecccCccCcCCC
Q 007226 188 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 266 (612)
Q Consensus 188 v~v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~-~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~ 266 (612)
+.|.+.|++ ...|. -.++-++...++++.+.+ .+.+ .....-|++.. ..+|+ +.++.|=|......
T Consensus 120 ~lv~~gD~v-~~~dl--~~l~~~h~~~~~~~ti~~-~~~~~~~~~~~Gvv~~--d~~g~------v~~~~eKp~~~~~~- 186 (407)
T PRK00844 120 VVVFGADHV-YRMDP--RQMVDFHIESGAGVTVAA-IRVPREEASAFGVIEV--DPDGR------IRGFLEKPADPPGL- 186 (407)
T ss_pred EEEecCCEE-EcCCH--HHHHHHHHhcCCcEEEEE-EecchHHcccCCEEEE--CCCCC------EEEEEECCCCcccc-
Confidence 889999984 33433 244666666666665553 2221 12234677754 23454 44444433221100
Q ss_pred CCCCCCccccccceeeEEEEeHHHHHhhhc
Q 007226 267 PFSSNGLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 267 ~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
.... ...-.|+....|+-+.|.+.++
T Consensus 187 ~~~~----~~~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 187 PDDP----DEALASMGNYVFTTDALVDALR 212 (407)
T ss_pred cCCC----CCcEEEeEEEEEeHHHHHHHHH
Confidence 0000 1123599999999998877664
No 16
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.62 E-value=0.0041 Score=68.76 Aligned_cols=209 Identities=15% Similarity=0.120 Sum_probs=114.9
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeCccCCCCCC-cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCch
Q 007226 36 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 111 (612)
Q Consensus 36 k~avvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gk-s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~ 111 (612)
++..|+||||.||||. ...||. ++|+ .|+ +++++.++++... | .-.++|.|+. ..
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~--Llpi-----~gk~plI~~~L~~l~~~--------G---i~~vivv~~~---~~ 61 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKP--AVPL-----AGKYRLIDIPISNCINS--------G---INKIYVLTQF---NS 61 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcce--eeEE-----CCeeEEeHHHHHHHHHC--------C---CCEEEEEecC---CH
Confidence 6788999999999997 378998 9988 577 9999999877653 3 2257888887 78
Q ss_pred HHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEE
Q 007226 112 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 191 (612)
Q Consensus 112 ~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~ 191 (612)
+..+++|.+..+|+...... +..+... ....-...+-|-|+-..... +.+....-+++.|.
T Consensus 62 ~~i~~~l~~~~~~~~~~~g~-------~~i~~~~-------~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl 122 (429)
T PRK02862 62 ASLNRHISQTYNFDGFSGGF-------VEVLAAQ-------QTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLIL 122 (429)
T ss_pred HHHHHHHhcCcCccccCCCE-------EEEeCCc-------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEe
Confidence 88999998643232110000 0001000 00000011246665433322 33333334678999
Q ss_pred ecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCC-cccceEEEEEecCCCceecceEEEEecccCccCcCC---CC
Q 007226 192 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGA-TEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR---GP 267 (612)
Q Consensus 192 ~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~-~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~---~~ 267 (612)
+.|++. ..|.. .++-.+...++++.+.+ .+...+ ...-|++.. ..+|+ +.++.|-|.....+ .+
T Consensus 123 ~gD~l~-~~dl~--~ll~~h~~~~a~~tl~~-~~~~~~~~~~yG~i~~--d~~g~------V~~~~Ekp~~~~~~~~~~~ 190 (429)
T PRK02862 123 SGDQLY-RMDYR--LFVQHHRETGADITLAV-LPVDEKDASGFGLMKT--DDDGR------ITEFSEKPKGDELKAMAVD 190 (429)
T ss_pred cCCEEE-eCCHH--HHHHHHHHcCCCEEEEE-EecChhhcccceEEEE--CCCCc------EEEEEECCCccccchhccc
Confidence 999843 44433 34555656666665554 222211 224677754 23454 33444433321000 00
Q ss_pred CC----CCCcc--ccccceeeEEEEeHHHHHhhhc
Q 007226 268 FS----SNGLQ--ADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 268 ~~----dg~~~--s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
.+ +.+.. ..+-.|+....|+-+.|.+.++
T Consensus 191 ~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~ 225 (429)
T PRK02862 191 TSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN 225 (429)
T ss_pred ccccccccccCCCCceEEEEEEEEEcHHHHHHHHH
Confidence 00 00000 1233599999999999887765
No 17
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.59 E-value=0.0025 Score=71.31 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=108.2
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHH
Q 007226 35 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 114 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T 114 (612)
+.++.|+||||.||||+...||. ++|+ .|++++++.++++.+. | .-.++|.++. ..+.+
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i 61 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKV--LHTL-----AGRSMLGHVLHAAAGL--------A---PQHLVVVVGH---DRERV 61 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHH
Confidence 35678999999999999888998 8887 6899999999988664 2 2367788877 45667
Q ss_pred HHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCc-hHhHHHHhcCchhHHHHCCcEEEEEEec
Q 007226 115 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQV 193 (612)
Q Consensus 115 ~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhG-dI~~aL~~sGlLd~l~~~Gikyv~v~~v 193 (612)
.+++++.. ..+.+..| ..|.|-| .++.+|. .+.+..-++++|.+.
T Consensus 62 ~~~~~~~~------~~~~~~~~----------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~g 107 (482)
T PRK14352 62 APAVAELA------PEVDIAVQ----------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAG 107 (482)
T ss_pred HHHhhccC------CccEEEeC----------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeC
Confidence 77775421 01111111 1233433 3555553 222223467899999
Q ss_pred CCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCc
Q 007226 194 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 273 (612)
Q Consensus 194 DN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~ 273 (612)
|+++...+ .+-.++-.+...+..+.+.. .+ .....+-|.+.. ..+|+ ...++|..+.++..
T Consensus 108 D~P~~~~~-~l~~li~~~~~~~~~~~v~~-~~-~~~p~~yg~~~~--~~~g~---V~~~~EKp~~~~~~----------- 168 (482)
T PRK14352 108 DVPLLDGE-TLADLVATHTAEGNAVTVLT-TT-LDDPTGYGRILR--DQDGE---VTAIVEQKDATPSQ----------- 168 (482)
T ss_pred CeeccCHH-HHHHHHHHHHhcCCeEEEEE-ee-cCCCCCCCEEEE--CCCCC---EEEEEECCCCCHHH-----------
Confidence 99865431 12223433333444433332 22 223334566543 24555 12344543321110
Q ss_pred ccccc-ceeeEEEEeHHHHHhhhc
Q 007226 274 QADFP-ANTNILYVDLASAELVGS 296 (612)
Q Consensus 274 ~s~f~-~Ninnl~~~L~~l~~~l~ 296 (612)
.... .|+...+|+-+.|.+.+.
T Consensus 169 -~~~~~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 169 -RAIREVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred -hhcceEEEEEEEEEHHHHHHHHH
Confidence 0111 499999999988877764
No 18
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.56 E-value=0.0032 Score=62.41 Aligned_cols=181 Identities=14% Similarity=0.124 Sum_probs=102.3
Q ss_pred EEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHHHH
Q 007226 39 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 118 (612)
Q Consensus 39 vvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~~l 118 (612)
+|+||||.||||+...||. ++|+ .|++++++.++++... | .-.++|.++. .++...+++
T Consensus 1 aiIlaaG~g~R~~~~~pK~--l~~v-----~gkpli~~~i~~l~~~--------~---i~~i~iv~~~---~~~~i~~~~ 59 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVLDAARAL--------G---PDRIVVVVGH---GAEQVKKAL 59 (229)
T ss_pred CEEEeCCCCccCCCCCChh--ccee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 3789999999999778998 8887 6899999988887653 2 1256777776 467777776
Q ss_pred HHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEecCCCc
Q 007226 119 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 197 (612)
Q Consensus 119 e~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~vDN~l 197 (612)
.+ + .+.++.|. .+.|.++ ++.++. .+ +.+.+++.+.+.|+++
T Consensus 60 ~~---~-----~~~~~~~~----------------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~ 102 (229)
T cd02540 60 AN---P-----NVEFVLQE----------------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPL 102 (229)
T ss_pred CC---C-----CcEEEECC----------------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCccc
Confidence 64 1 12233221 0234333 444442 22 2235789999999986
Q ss_pred cccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCccccc
Q 007226 198 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 277 (612)
Q Consensus 198 a~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s~f 277 (612)
...+ .+-.++-.....+.+..+.+ .+...+ ..-|.+.. ..+|+ ++++.+=+... + .. ...+
T Consensus 103 ~~~~-~i~~l~~~~~~~~~~~~~~~-~~~~~p-~~~~~~~~--~~~~~------v~~~~ek~~~~-~------~~-~~~~ 163 (229)
T cd02540 103 ITPE-TLQRLLEAHREAGADVTVLT-AELEDP-TGYGRIIR--DGNGK------VLRIVEEKDAT-E------EE-KAIR 163 (229)
T ss_pred cCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CCccEEEE--cCCCC------EEEEEECCCCC-h------HH-Hhhc
Confidence 5431 12122333333345554443 333333 34565543 23455 33333322111 0 00 0013
Q ss_pred cceeeEEEEeHHHHHhhhc
Q 007226 278 PANTNILYVDLASAELVGS 296 (612)
Q Consensus 278 ~~Ninnl~~~L~~l~~~l~ 296 (612)
..|++..+|+-+.+.+.++
T Consensus 164 ~~~~giy~~~~~~~~~~l~ 182 (229)
T cd02540 164 EVNAGIYAFDAEFLFEALP 182 (229)
T ss_pred eEEeEEEEEEHHHHHHHHH
Confidence 3499999999887766664
No 19
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.56 E-value=0.0018 Score=69.73 Aligned_cols=192 Identities=16% Similarity=0.117 Sum_probs=109.5
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeCccCCCCCC-cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCch
Q 007226 36 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 111 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gk-s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~ 111 (612)
++..|+||||.||||.- +.||. ++|+ .|| ++++++++.+.+. | .--++|.++. -+
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKp--LlpV-----~gk~PlIe~~l~~L~~~--------G---i~~I~iv~~~---~~ 60 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLA--SLPF-----GGRYRLIDFPLSNMVNA--------G---IRNVFIFFKN---KE 60 (369)
T ss_pred cEEEEEECCCCCccccccccCCccc--cccc-----CCeeeEEEEEhhhhhcc--------C---CCEEEEEeCC---Cc
Confidence 56779999999999973 78888 8877 688 8999999988764 3 1257788887 44
Q ss_pred H-HHHHHHHHcccCCCCCCce---EEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEE
Q 007226 112 E-RITSLCERLRWFGRGQSSF---QLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 187 (612)
Q Consensus 112 ~-~T~~~le~~~~FGl~~~qV---~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Giky 187 (612)
+ ...++|.+...||++..+. .++.|+ ..|-|-|+.+..... .+.+...+-+.
T Consensus 61 ~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e---------------------~~~l~tg~~~a~~~a---~~~l~~~~~~~ 116 (369)
T TIGR02092 61 RQSLFDHLGSGREWDLHRKRDGLFVFPYND---------------------RDDLSEGGKRYFSQN---LEFLKRSTSEY 116 (369)
T ss_pred HHHHHHHHhCCCCCCcccccCcEEEEeccC---------------------CCCcccChHHHHHHH---HHHHHhCCCCE
Confidence 4 8999998766677643211 111111 112333444433322 22232223368
Q ss_pred EEEEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecC--CCcccceEEEEEecCCCceecceEEEEecccCccCcCC
Q 007226 188 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS--GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR 265 (612)
Q Consensus 188 v~v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~--~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~ 265 (612)
+.|.+.|+ +...| +..++-.+.+.++++.+.. .+.. .+..-.+++.. ..+|+ + .++.+-++ +
T Consensus 117 ~lvlnGD~-l~~~d--l~~ll~~h~~~~a~~tl~~-~~v~~~~~~~~g~vv~~--~~~g~----v--~~~~~~~~---~- 180 (369)
T TIGR02092 117 TVVLNSHM-VCNID--LKAVLKYHEETGKDITVVY-KKVKPADASEYDTILRF--DESGK----V--KSIGQNLN---P- 180 (369)
T ss_pred EEEECCCE-EEecC--HHHHHHHHHHcCCCEEEEE-EecCHHHccccCcEEEE--cCCCC----E--EeccccCC---C-
Confidence 89999998 34444 3344666666677665443 3322 12222455533 13444 3 22211111 0
Q ss_pred CCCCCCCccccccceeeEEEEeHHHHHhhhc
Q 007226 266 GPFSSNGLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 266 ~~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
+. ..-.|+..++|+-+.+.+.++
T Consensus 181 ----~~----~~~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 181 ----EE----EENISLDIYIVSTDLLIELLY 203 (369)
T ss_pred ----CC----cceeeeeEEEEEHHHHHHHHH
Confidence 00 111378899999887766654
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.55 E-value=0.0025 Score=70.35 Aligned_cols=184 Identities=15% Similarity=0.136 Sum_probs=103.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.+..|+||||.||||+...||. ++|+ .|++++++.++.+.+. + .-.++|.++. ..+...
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKV--LQTL-----LGEPMLRFVYRALRPL--------F---GDNVWTVVGH---RADMVR 63 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCce--eccc-----CCCcHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5778999999999999889999 8887 6999999999877543 2 1146677776 445555
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCc-hHhHHHHhcCchhHHHHCCcEEEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhG-dI~~aL~~sGlLd~l~~~Gikyv~v~~vD 194 (612)
+++.+ .++.+..|+ .|.|-| .++.++ +.|.+.+.+++.+.+.|
T Consensus 64 ~~~~~--------~~~~~v~~~----------------------~~~Gt~~al~~a~------~~l~~~~~d~vlv~~gD 107 (456)
T PRK14356 64 AAFPD--------EDARFVLQE----------------------QQLGTGHALQCAW------PSLTAAGLDRVLVVNGD 107 (456)
T ss_pred Hhccc--------cCceEEEcC----------------------CCCCcHHHHHHHH------HHHhhcCCCcEEEEeCC
Confidence 54432 112111111 123333 344433 44544467899999999
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
+++...+ .+-.++.. ..+.+..+.+ .+-..+ ..-|++.. .+|+ ....+|-..+++.... .
T Consensus 108 ~P~i~~~-~i~~li~~--~~~~~~~l~~-~~~~~~-~~~g~v~~---~~g~---V~~~~ek~~~~~~~~~----~----- 167 (456)
T PRK14356 108 TPLVTTD-TIDDFLKE--AAGADLAFMT-LTLPDP-GAYGRVVR---RNGH---VAAIVEAKDYDEALHG----P----- 167 (456)
T ss_pred cccCCHH-HHHHHHHH--HhcCCEEEEE-EEcCCC-CCceEEEE---cCCe---EEEEEECCCCChHHhh----h-----
Confidence 9876541 12122322 2244444443 222223 24676643 4665 1233442222221100 0
Q ss_pred ccccceeeEEEEeHHHHHhhhc
Q 007226 275 ADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
...-.|+....|+-+++++++.
T Consensus 168 ~~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 168 ETGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred hcCeEEEEEEEEEHHHHHHHHH
Confidence 0112489999999998877664
No 21
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.54 E-value=0.005 Score=60.35 Aligned_cols=176 Identities=20% Similarity=0.152 Sum_probs=101.1
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+|+||||.|+||+- ..||. ++|+ .|++++++.++.+... | +. .++|.|+. ..+.+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~--ll~i-----~g~pli~~~l~~l~~~--------g--~~-~v~vv~~~---~~~~i~ 59 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKP--LAPV-----AGRPFLEYLLEYLARQ--------G--IS-RIVLSVGY---LAEQIE 59 (223)
T ss_pred CEEecCCcccccCcccCCCCcc--ccEE-----CCcchHHHHHHHHHHC--------C--CC-EEEEEccc---CHHHHH
Confidence 37899999999974 57998 8887 6899999999887653 2 11 46777776 667788
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~vD 194 (612)
+++.+...+|. ++.+ .. . ..+-|.++ ++.++. .+ +-+++.+.+.|
T Consensus 60 ~~~~~~~~~~~---~~~~--------~~-~-------------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D 105 (223)
T cd06915 60 EYFGDGYRGGI---RIYY--------VI-E-------------PEPLGTGGAIKNALP------KL---PEDQFLVLNGD 105 (223)
T ss_pred HHHcCccccCc---eEEE--------EE-C-------------CCCCcchHHHHHHHh------hc---CCCCEEEEECC
Confidence 88875332221 1111 11 0 12355543 444442 22 22678889999
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
++. ..| +..++-.+...+.++.+.+ .+.... ..-|++.. ..+|+ ++++.+=+... .
T Consensus 106 ~~~-~~~--~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~--d~~~~------v~~~~ek~~~~--------~--- 161 (223)
T cd06915 106 TYF-DVD--LLALLAALRASGADATMAL-RRVPDA-SRYGNVTV--DGDGR------VIAFVEKGPGA--------A--- 161 (223)
T ss_pred ccc-CCC--HHHHHHHHHhCCCcEEEEE-EECCCC-CcceeEEE--CCCCe------EEEEEeCCCCC--------C---
Confidence 865 232 3344444445556665554 333222 33455432 13444 44555422110 0
Q ss_pred ccccceeeEEEEeHHHHHhh
Q 007226 275 ADFPANTNILYVDLASAELV 294 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l~~~ 294 (612)
.+-.|++..+|+-++++.+
T Consensus 162 -~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 162 -PGLINGGVYLLRKEILAEI 180 (223)
T ss_pred -CCcEEEEEEEECHHHHhhC
Confidence 1234899999999988654
No 22
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.53 E-value=0.003 Score=62.90 Aligned_cols=124 Identities=16% Similarity=0.160 Sum_probs=79.2
Q ss_pred EEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | .--++|.|.. ..+.+.
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~--llpi-----~g~piI~~~l~~l~~~--------G---i~~I~iv~~~---~~~~i~ 61 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRC--LLPL-----ANVPLIDYTLEFLALN--------G---VEEVFVFCCS---HSDQIK 61 (217)
T ss_pred EEEEcCCCcccccccccCCCce--eeEE-----CCEehHHHHHHHHHHC--------C---CCeEEEEeCC---CHHHHH
Confidence 5889999999998 578998 8887 6889999999887663 3 1246788886 678899
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
++|++..++++... ...+..+. . ..+.|-|+..+.+...+.+ .+.+.+.+.|+
T Consensus 62 ~~l~~~~~~~~~~~------~~~i~~~~-~-------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 62 EYIEKSKWSKPKSS------LMIVIIIM-S-------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHHhhccccccccC------cceEEEEe-C-------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 99998766554321 00111111 0 0134456666665544332 24567888887
Q ss_pred CccccchhhHHHhhhhhh
Q 007226 196 VVAATDLTLLALAGIGLH 213 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~ 213 (612)
+. ..|. -.++.++..
T Consensus 115 i~-~~dl--~~~l~~h~~ 129 (217)
T cd04197 115 VS-NIDL--KEILEEHKE 129 (217)
T ss_pred ee-ccCH--HHHHHHHHH
Confidence 64 3443 244666655
No 23
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.53 E-value=0.0043 Score=60.64 Aligned_cols=175 Identities=19% Similarity=0.218 Sum_probs=103.6
Q ss_pred EEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 40 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 40 vlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | --.++|.|.. ..+.+.+
T Consensus 2 iIlaaG~g~R~~~~t~~~pK~--ll~v-----~g~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~i~~ 60 (217)
T cd04181 2 VILAAGKGTRLRPLTDTRPKP--LLPI-----AGKPILEYIIERLARA--------G---IDEIILVVGY---LGEQIEE 60 (217)
T ss_pred EEecCCccccccccccCCCcc--ccEE-----CCeeHHHHHHHHHHHC--------C---CCEEEEEecc---CHHHHHH
Confidence 789999999998 367898 8887 6899999999987664 2 1246777776 5567777
Q ss_pred HHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 117 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 117 ~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
++.+...+|+ .+.+..| ..|.|.++ ++.++ +.+ .-+++.|.+.|+
T Consensus 61 ~~~~~~~~~~---~i~~~~~----------------------~~~~g~~~al~~~~------~~~---~~~~~lv~~~D~ 106 (217)
T cd04181 61 YFGDGSKFGV---NIEYVVQ----------------------EEPLGTAGAVRNAE------DFL---GDDDFLVVNGDV 106 (217)
T ss_pred HHcChhhcCc---eEEEEeC----------------------CCCCccHHHHHHhh------hhc---CCCCEEEEECCe
Confidence 7776443332 2221111 12345543 33332 222 347889999998
Q ss_pred CccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCccc
Q 007226 196 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 275 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s 275 (612)
+. ..| +..++-.+...+.+..+.+ .+ ......-|++.. ..+|+ ++++.|-++.. .
T Consensus 107 ~~-~~~--~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~v~~--d~~~~------v~~~~ek~~~~--------~---- 161 (217)
T cd04181 107 LT-DLD--LSELLRFHREKGADATIAV-KE-VEDPSRYGVVEL--DDDGR------VTRFVEKPTLP--------E---- 161 (217)
T ss_pred ec-CcC--HHHHHHHHHhcCCCEEEEE-EE-cCCCCcceEEEE--cCCCc------EEEEEECCCCC--------C----
Confidence 53 333 3344555556666766554 33 224445677644 13344 45555433211 0
Q ss_pred cccceeeEEEEeHHHHHhhh
Q 007226 276 DFPANTNILYVDLASAELVG 295 (612)
Q Consensus 276 ~f~~Ninnl~~~L~~l~~~l 295 (612)
....|+...+|+-+.+ +.+
T Consensus 162 ~~~~~~Giy~~~~~~~-~~l 180 (217)
T cd04181 162 SNLANAGIYIFEPEIL-DYI 180 (217)
T ss_pred CCEEEEEEEEECHHHH-Hhh
Confidence 1235999999998776 344
No 24
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.53 E-value=0.0046 Score=61.75 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=52.6
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHH
Q 007226 38 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 114 (612)
Q Consensus 38 avvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T 114 (612)
..|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | --.++|.|+. ..+..
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~--l~~i-----~g~~li~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~ 60 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQ--LIPV-----AGKPIIQYAIEDLREA--------G---IEDIGIVVGP---TGEEI 60 (236)
T ss_pred eEEEECCCccccccccccCCCce--eeEE-----CCcchHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHH
Confidence 56889999999997 578998 9888 6899999998887643 2 1257888887 77888
Q ss_pred HHHHHHcccCCC
Q 007226 115 TSLCERLRWFGR 126 (612)
Q Consensus 115 ~~~le~~~~FGl 126 (612)
.+++++...+++
T Consensus 61 ~~~~~~~~~~~~ 72 (236)
T cd04189 61 KEALGDGSRFGV 72 (236)
T ss_pred HHHhcchhhcCC
Confidence 888886554543
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.52 E-value=0.0032 Score=69.35 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=102.5
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
++.|+||||.|||||...||. ++|+ .|++++++.++.+.+.. ....+|.+.. ..+...+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~g-----------~~~iivvv~~---~~~~i~~ 60 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKV--LHPL-----GGKSLVERVLDSCEELK-----------PDRRLVIVGH---QAEEVEQ 60 (450)
T ss_pred ceEEEEeCCCCccCCCCCChh--cCEE-----CChhHHHHHHHHHHhCC-----------CCeEEEEECC---CHHHHHH
Confidence 577999999999999888998 8887 68999999998876642 2256666665 4455666
Q ss_pred HHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCCC
Q 007226 117 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 196 (612)
Q Consensus 117 ~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN~ 196 (612)
+++++. .+.+..|. .+.|.++-+.+.. +.+.+ .-++++|...|.+
T Consensus 61 ~~~~~~-------~i~~v~~~----------------------~~~G~~~sv~~~~-----~~l~~-~~~~vlV~~~D~P 105 (450)
T PRK14360 61 SLAHLP-------GLEFVEQQ----------------------PQLGTGHAVQQLL-----PVLKG-FEGDLLVLNGDVP 105 (450)
T ss_pred HhcccC-------CeEEEEeC----------------------CcCCcHHHHHHHH-----HHhhc-cCCcEEEEeCCcc
Confidence 665321 22222111 1345443332221 22221 1246788999998
Q ss_pred ccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcccc
Q 007226 197 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 276 (612)
Q Consensus 197 la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s~ 276 (612)
+...+ .+-.++-.+...++++.+.. .+...+ ..-|.+.. ..+|+ +++..|=++.... ... .
T Consensus 106 ~i~~~-~l~~ll~~~~~~~~~~~~~~-~~~~~~-~~~g~~~~--d~~g~------v~~~~ek~~~~~~----~~~----~ 166 (450)
T PRK14360 106 LLRPE-TLEALLNTHRSSNADVTLLT-ARLPNP-KGYGRVFC--DGNNL------VEQIVEDRDCTPA----QRQ----N 166 (450)
T ss_pred ccCHH-HHHHHHHHHHhcCCcEEEEE-EecCCC-CCccEEEE--CCCCC------EEEEEECCCCChh----Hhc----C
Confidence 75531 12122334444455554432 333333 23455533 24554 3344332221100 001 1
Q ss_pred ccceeeEEEEeHHHHHhhhc
Q 007226 277 FPANTNILYVDLASAELVGS 296 (612)
Q Consensus 277 f~~Ninnl~~~L~~l~~~l~ 296 (612)
...|+...+|+-+.+.+.++
T Consensus 167 ~~~~~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 167 NRINAGIYCFNWPALAEVLP 186 (450)
T ss_pred cEEEEEEEEEEHHHHHHHHh
Confidence 22588999999988887764
No 26
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.45 E-value=0.0057 Score=66.91 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=105.2
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
+.+|+||||.||||+...||- ++|+ .|++++++.++++++.. -.++|+++. ..+...+
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~--Llpi-----~gkPli~~~i~~l~~~~------------~~i~Ivv~~---~~~~i~~ 60 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKV--LHTI-----CGKPMLFYILKEAFAIS------------DDVHVVLHH---QKERIKE 60 (430)
T ss_pred ccEEEEcCCCCccCCCCCCce--eCEE-----CCccHHHHHHHHHHHcC------------CcEEEEECC---CHHHHHH
Confidence 567899999999999888998 9887 69999999999886531 146778876 6778888
Q ss_pred HHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCCC
Q 007226 117 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 196 (612)
Q Consensus 117 ~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN~ 196 (612)
++.+. ++ ++.+..|+ ...+.|.|+....+ ...-+++.+.+.|++
T Consensus 61 ~~~~~--~~----~v~~~~~~--------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p 104 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQD--------------------LENYPGTGGALMGI----------EPKHERVLILNGDMP 104 (430)
T ss_pred HHHhc--CC----ceEEEEec--------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCcc
Confidence 88753 11 24333332 11233554433221 112478999999998
Q ss_pred ccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcccc
Q 007226 197 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 276 (612)
Q Consensus 197 la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s~ 276 (612)
+... .. +--....+.+..+.+ .+...+. .-|++.. .+|+ ...++|....+. .. ...
T Consensus 105 ~~~~--~~---l~~l~~~~~~~~v~~-~~~~~~~-~~g~v~~---d~g~---v~~i~e~~~~~~----------~~-~~~ 160 (430)
T PRK14359 105 LVEK--DE---LEKLLENDADIVMSV-FHLADPK-GYGRVVI---ENGQ---VKKIVEQKDANE----------EE-LKI 160 (430)
T ss_pred CCCH--HH---HHHHHhCCCCEEEEE-EEcCCCc-cCcEEEE---cCCe---EEEEEECCCCCc----------cc-ccc
Confidence 7432 22 222334455544443 3333332 3566543 3565 123444332111 00 012
Q ss_pred ccceeeEEEEeHHHHHhhhc
Q 007226 277 FPANTNILYVDLASAELVGS 296 (612)
Q Consensus 277 f~~Ninnl~~~L~~l~~~l~ 296 (612)
+-.|+...+|+-+++++.++
T Consensus 161 ~~~~~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 161 KSVNAGVYLFDRKLLEEYLP 180 (430)
T ss_pred eEEEeEEEEEEHHHHHHHHH
Confidence 33489999999999987664
No 27
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.44 E-value=0.0064 Score=64.11 Aligned_cols=180 Identities=19% Similarity=0.220 Sum_probs=104.7
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchH
Q 007226 36 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 112 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~ 112 (612)
.+-.|+||||.||||.- ..||- ++|+ .||+++++.++.+... | + --++|.+.. .-.+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~--Llpv-----~gkPmI~~~l~~l~~a--------G--i-~~I~ii~~~--~~~~ 62 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G--I-RDILIISTP--QDTP 62 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCce--EeEE-----CCEEHHHHHHHHHHHC--------C--C-CEEEEEecC--CchH
Confidence 46779999999999985 78998 9888 6899999998887653 3 1 245556555 2456
Q ss_pred HHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEe
Q 007226 113 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 192 (612)
Q Consensus 113 ~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~ 192 (612)
...++|.+...||+ ++.+..|. .|.|-|+-+.... .+.. +-+ ..+..
T Consensus 63 ~~~~~l~~g~~~g~---~i~y~~q~----------------------~~~Gta~Al~~a~------~~i~-~~~-~~lv~ 109 (292)
T PRK15480 63 RFQQLLGDGSQWGL---NLQYKVQP----------------------SPDGLAQAFIIGE------EFIG-GDD-CALVL 109 (292)
T ss_pred HHHHHHcCccccCc---eeEEEECC----------------------CCCCHHHHHHHHH------HHhC-CCC-EEEEE
Confidence 67788876566665 23322221 2566665443322 2222 223 45567
Q ss_pred cCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCC
Q 007226 193 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 272 (612)
Q Consensus 193 vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~ 272 (612)
.||++...|- -.++-.+...+.+..+.+ .+... .+.-|++.. ..+|+ ++++.|=|.. . .
T Consensus 110 gD~i~~~~~l--~~ll~~~~~~~~~~tv~~-~~v~~-p~~yGvv~~--d~~g~------v~~i~EKP~~-------p-~- 168 (292)
T PRK15480 110 GDNIFYGHDL--PKLMEAAVNKESGATVFA-YHVND-PERYGVVEF--DQNGT------AISLEEKPLQ-------P-K- 168 (292)
T ss_pred CCeeeeccCH--HHHHHHHHhCCCCeEEEE-EEcCC-cccCcEEEE--CCCCc------EEEEEECCCC-------C-C-
Confidence 8998765543 334555555555555443 33232 345677754 23555 3344332221 0 1
Q ss_pred ccccccceeeEEEEeHHHHH
Q 007226 273 LQADFPANTNILYVDLASAE 292 (612)
Q Consensus 273 ~~s~f~~Ninnl~~~L~~l~ 292 (612)
+. -+|+...+|+-+.++
T Consensus 169 --s~-~a~~GiY~~~~~v~~ 185 (292)
T PRK15480 169 --SN-YAVTGLYFYDNDVVE 185 (292)
T ss_pred --CC-EEEEEEEEEChHHHH
Confidence 11 259999999976554
No 28
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.40 E-value=0.0057 Score=67.37 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=103.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
++..|+||||.|||||...||. ++|+ .|++++++.++.+.+. | .-.++|.++. .++...
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i~ 63 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKV--LHPV-----AGRPMLAHVLAAAASL--------G---PSRVAVVVGP---GAEAVA 63 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcc--cCEE-----CCchHHHHHHHHHHhC--------C---CCcEEEEECC---CHHHHH
Confidence 5788999999999999878998 8887 6899999999888654 2 1256777776 567777
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~vD 194 (612)
+++.+. +. ++.++.|+ .|.|.++ ++.++ +.+. .+-+++++.+.|
T Consensus 64 ~~~~~~---~~---~~~~~~~~----------------------~~~G~~~sl~~a~------~~l~-~~~~~~lv~~~D 108 (446)
T PRK14353 64 AAAAKI---AP---DAEIFVQK----------------------ERLGTAHAVLAAR------EALA-GGYGDVLVLYGD 108 (446)
T ss_pred HHhhcc---CC---CceEEEcC----------------------CCCCcHHHHHHHH------HHHh-ccCCCEEEEeCC
Confidence 776531 11 11122210 1334433 33333 2222 234678888999
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
.++...+. +-.++- ....+.+..+.+ .+.. ...+.|.+.. .+|+ ++++.|=|+... .+.
T Consensus 109 ~P~i~~~~-l~~l~~-~~~~~~~~~i~~-~~~~-~~~~~g~~~~---~~g~------v~~~~ek~~~~~-----~~~--- 167 (446)
T PRK14353 109 TPLITAET-LARLRE-RLADGADVVVLG-FRAA-DPTGYGRLIV---KGGR------LVAIVEEKDASD-----EER--- 167 (446)
T ss_pred cccCCHHH-HHHHHH-hHhcCCcEEEEE-EEeC-CCCcceEEEE---CCCe------EEEEEECCCCCh-----HHh---
Confidence 98754421 212222 223344544443 3322 2235666643 4554 344444222110 000
Q ss_pred ccccceeeEEEEeHHHHHhhhc
Q 007226 275 ADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
..+-.|+..++|+-+.+.+.++
T Consensus 168 ~~~~~~~Giy~~~~~~l~~~l~ 189 (446)
T PRK14353 168 AITLCNSGVMAADGADALALLD 189 (446)
T ss_pred hceEEEEEEEEEEHHHHHHHHH
Confidence 0122488999999887766654
No 29
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.39 E-value=0.0079 Score=66.60 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=121.5
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeCccCCCCCC-cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCc
Q 007226 35 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 110 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gk-s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T 110 (612)
.++..|+||||.||||. ...||. ++|+ .|+ ++++++++.+... | .--++|.++. .
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~--llpv-----~g~~plId~~L~~l~~~--------G---i~~i~iv~~~---~ 60 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKP--AVPI-----GGNYRLIDIPMSNCINS--------G---INKIYVLTQF---N 60 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCccc--ceEe-----CCcceEehHHHHHHHhC--------C---CCEEEEEecc---C
Confidence 46788999999999998 588999 9988 454 9999998887653 3 1246788887 7
Q ss_pred hHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEE
Q 007226 111 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 190 (612)
Q Consensus 111 ~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v 190 (612)
.+...++|++..+|+.... +.++.+..+. . .+. ..-...|.|.||-...... .+++...++-+++.+
T Consensus 61 ~~~i~~~l~~~~~~~~~~~----~~~~~~~i~~-~-----~q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv 127 (436)
T PLN02241 61 SASLNRHLSRAYNFGNGGN----FGDGFVEVLA-A-----TQT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLI 127 (436)
T ss_pred HHHHHHHHhccCCCCCCcc----cCCCCEEEcC-C-----ccc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEE
Confidence 7889999985433443110 1111111110 0 000 0011257888775533322 233222123478999
Q ss_pred EecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCC-CcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCC
Q 007226 191 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 269 (612)
Q Consensus 191 ~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~-~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~ 269 (612)
.+-|++ ...| +..++-.+.+.++++.+.+ .+... ....-|++.. ..+|+ ++++.|-|.........-
T Consensus 128 ~~gD~v-~~~d--l~~ll~~h~~~~a~~ti~~-~~v~~~~~~~ygvv~~--d~~~~------v~~~~Ekp~~~~~~~~~~ 195 (436)
T PLN02241 128 LSGDHL-YRMD--YMDFVQKHRESGADITIAC-LPVDESRASDFGLMKI--DDTGR------IIEFSEKPKGDELKAMQV 195 (436)
T ss_pred ecCCeE-EccC--HHHHHHHHHHcCCCEEEEE-EecchhhcCcceEEEE--CCCCC------EEEEEECCCCcccccccc
Confidence 999985 4444 3345666666777765543 33221 1245677754 23444 667766653321000000
Q ss_pred CCC--------ccc-cccceeeEEEEeHHHHHhhhc
Q 007226 270 SNG--------LQA-DFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 270 dg~--------~~s-~f~~Ninnl~~~L~~l~~~l~ 296 (612)
+.+ ... ..-.|+....|+-+.+..+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 196 DTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred cccccccccccccccceEEEeEEEEEEHHHHHHHHH
Confidence 000 001 122499999999998887765
No 30
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.38 E-value=0.0067 Score=63.71 Aligned_cols=176 Identities=19% Similarity=0.239 Sum_probs=101.5
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||||.||||.- ..||- ++|+ .||+++++.++.+... | .-.++|.+.. ...+..+
T Consensus 2 aIILAgG~GtRL~plT~~~pK~--Llpv-----~gkPmI~~~L~~l~~a--------G---i~~I~iv~~~--~~~~~~~ 61 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G---IRDILIISTP--QDTPRFQ 61 (286)
T ss_pred EEEECCCCCccCCcccCCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEecC--CcHHHHH
Confidence 47899999999974 78998 9988 6889999999887653 3 1246666665 3566778
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
++|.....||+ ++.+..|+ .|-|-|+-+.... + +... +-..+...||
T Consensus 62 ~~lg~g~~~g~---~i~~~~q~----------------------~~~Gta~al~~a~-----~-~l~~--~~~~li~gD~ 108 (286)
T TIGR01207 62 QLLGDGSQWGV---NLSYAVQP----------------------SPDGLAQAFIIGE-----D-FIGG--DPSALVLGDN 108 (286)
T ss_pred HHhccccccCc---eEEEEEcc----------------------CCCCHHHHHHHHH-----H-HhCC--CCEEEEECCE
Confidence 88876556665 33332231 3556554333221 1 2221 3345567999
Q ss_pred CccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCccc
Q 007226 196 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 275 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s 275 (612)
++...| +-.++-.+...+.++.+.+ .+...+ +.-|++.. ..+|+ +++..|=|.. + . +
T Consensus 109 i~~~~~--l~~ll~~~~~~~~~~ti~~-~~v~~p-~~yGvv~~--d~~g~------V~~i~EKp~~--~------~---s 165 (286)
T TIGR01207 109 IFYGHD--LSDLLKRAAARESGATVFA-YQVSDP-ERYGVVEF--DSNGR------AISIEEKPAQ--P------K---S 165 (286)
T ss_pred eccccC--HHHHHHHHHhcCCCcEEEE-EEccCH-HHCceEEE--CCCCe------EEEEEECCCC--C------C---C
Confidence 875444 2233444445555554443 332323 45678754 23554 3344332211 0 1 1
Q ss_pred cccceeeEEEEeHHHH
Q 007226 276 DFPANTNILYVDLASA 291 (612)
Q Consensus 276 ~f~~Ninnl~~~L~~l 291 (612)
.+ +|+...+|+-+.+
T Consensus 166 ~~-~~~GiYi~~~~i~ 180 (286)
T TIGR01207 166 NY-AVTGLYFYDNRVV 180 (286)
T ss_pred CE-EEEEEEEEchHHH
Confidence 22 6999999997754
No 31
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.38 E-value=0.00074 Score=67.77 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=109.3
Q ss_pred EEecCCccccCC---CCCCCCCceeeCccCCCCCC-cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 40 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 40 vlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gk-s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
|+||||.||||. .+.||. ++|+ .|+ +++++.++++.... +.-.++|.+.. ..+...
T Consensus 3 vIla~G~GtRl~plt~~~pK~--ll~i-----~g~~pli~~~l~~l~~~g----------~~~ii~V~~~~---~~~~i~ 62 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKP--LLPI-----GGKYPLIDYVLENLANAG----------IKEIIVVVNGY---KEEQIE 62 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGG--GSEE-----TTEEEHHHHHHHHHHHTT----------CSEEEEEEETT---THHHHH
T ss_pred EEECCCCCccCchhhhccccc--ccee-----cCCCcchhhhhhhhcccC----------CceEEEEEeec---cccccc
Confidence 677999999997 578888 8887 567 99999999987753 23335666655 678888
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCC-cEEEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG-RKGATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~G-ikyv~v~~vD 194 (612)
+++++...+++ +|.+..|+. |.|-|+-...+ .+.+.... -+++.|.+.|
T Consensus 63 ~~~~~~~~~~~---~i~~i~~~~----------------------~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQPE----------------------PLGTAGALLQA-----LDFIEEEDDDEDFLVLNGD 112 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEESS----------------------SSCHHHHHHHT-----HHHHTTSEE-SEEEEETTE
T ss_pred ccccccccccc---cceeeeccc----------------------ccchhHHHHHH-----HHHhhhccccceEEEEecc
Confidence 99998665551 222222211 11444333222 23332222 3579999999
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
++.-. | +..++-.+...+.++.+.+.........+-|++.. ..+|+ |++.-|=|....
T Consensus 113 ~i~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~------V~~~~EKP~~~~----------- 170 (248)
T PF00483_consen 113 IIFDD-D--LQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDGR------VIRIVEKPDNPN----------- 170 (248)
T ss_dssp EEEST-T--HHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTSE------EEEEEESCSSHS-----------
T ss_pred ccccc-h--hhhHHHhhhccccccccccccccccccccceeeee--cccee------EEEEeccCcccc-----------
Confidence 85544 3 33557777777776533332323334445677654 24454 444443333210
Q ss_pred ccccceeeEEEEeHHHHHhhh
Q 007226 275 ADFPANTNILYVDLASAELVG 295 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l~~~l 295 (612)
..-..|+...+|+-+.+..++
T Consensus 171 ~~~~~~~G~Y~~~~~~~~~~~ 191 (248)
T PF00483_consen 171 ASNLINTGIYIFKPEIFDFLL 191 (248)
T ss_dssp HSSEEEEEEEEEETHHHHHHH
T ss_pred cceeccCceEEEcchHHHHHh
Confidence 011249999999999887775
No 32
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.36 E-value=0.0028 Score=69.51 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=48.2
Q ss_pred EEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHHH
Q 007226 38 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 117 (612)
Q Consensus 38 avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~~ 117 (612)
-.|+||||.||||+...||- ++|+ .|++++++.++++.+. | .-.++|.++. ..+.+.++
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iiiv~~~---~~~~i~~~ 60 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVIDAARAL--------G---PQKIHVVYGH---GAEQVRKA 60 (451)
T ss_pred eEEEEcCCCCcccCCCCchh--hcee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHH
Confidence 36889999999999888998 8887 6899999998887653 2 2256788887 46667777
Q ss_pred HHH
Q 007226 118 CER 120 (612)
Q Consensus 118 le~ 120 (612)
+.+
T Consensus 61 ~~~ 63 (451)
T TIGR01173 61 LAN 63 (451)
T ss_pred hcC
Confidence 764
No 33
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.34 E-value=0.0077 Score=66.83 Aligned_cols=185 Identities=14% Similarity=0.099 Sum_probs=106.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
++..|+||||.||||+...||. ++|+ .|++++++.++++.+. | .-.++|.++. ..+...
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~--l~pi-----~g~pli~~~l~~l~~~--------g---i~~iiiv~~~---~~~~i~ 61 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKV--MHPL-----AGRPMVSWPVAAAREA--------G---AGRIVLVVGH---QAEKVR 61 (459)
T ss_pred cceEEEEcCCCCcccCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCeEEEEECC---CHHHHH
Confidence 5678999999999999888998 9887 5889999988877653 2 2367888887 566777
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~vD 194 (612)
++|.+.. .+.+..|+ .|-|.|+ ++.++ +.+. ..-+++.+.+.|
T Consensus 62 ~~~~~~~-------~i~~~~~~----------------------~~~Gt~~al~~a~------~~l~-~~~~~vlv~~gD 105 (459)
T PRK14355 62 EHFAGDG-------DVSFALQE----------------------EQLGTGHAVACAA------PALD-GFSGTVLILCGD 105 (459)
T ss_pred HHhccCC-------ceEEEecC----------------------CCCCHHHHHHHHH------HHhh-ccCCcEEEEECC
Confidence 7775311 23222221 1235544 33333 2232 224789999999
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
+++...+ .+-.++-.+...+.++.+.. .+...+ ..-|++.. ..+|+ +++..|=|+.... ..
T Consensus 106 ~p~~~~~-~i~~l~~~~~~~~~~~~v~~-~~~~~~-~~~g~v~~--d~~g~------v~~~~ek~~~~~~------~~-- 166 (459)
T PRK14355 106 VPLLRAE-TLQGMLAAHRATGAAVTVLT-ARLENP-FGYGRIVR--DADGR------VLRIVEEKDATPE------ER-- 166 (459)
T ss_pred ccCcCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CcCCEEEE--cCCCC------EEEEEEcCCCChh------Hh--
Confidence 9865431 11123444444444444332 333233 33455533 13454 4444443321100 00
Q ss_pred ccccceeeEEEEeHHHHHhhhc
Q 007226 275 ADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
..+..|++..+|+-+++.+.+.
T Consensus 167 ~~~~~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 167 SIREVNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred hccEEEEEEEEEeHHHHHHHHH
Confidence 1123599999999988766654
No 34
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.33 E-value=0.012 Score=65.13 Aligned_cols=201 Identities=9% Similarity=0.068 Sum_probs=117.1
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeCccCCCCCCc-chHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCc
Q 007226 35 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRT-LLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 110 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks-~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T 110 (612)
.++..|+||||.||||.- ..||. ++|+ .|++ ++++.++++... | .-.++|.|+. .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~--llpv-----~gkp~lI~~~l~~l~~~--------G---i~~i~vv~~~---~ 72 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKP--AVYF-----GGKFRIIDFALSNCINS--------G---IRRIGVLTQY---K 72 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcce--eEEE-----CCEEEEhHHHHHHHHHC--------C---CCeEEEEecC---C
Confidence 578999999999999985 68998 9888 5886 999999887653 3 2257888887 7
Q ss_pred hHHHHHHHHHcccCCCCCC----ceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCc
Q 007226 111 HERITSLCERLRWFGRGQS----SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGR 185 (612)
Q Consensus 111 ~~~T~~~le~~~~FGl~~~----qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gi 185 (612)
.+...++|.+. +++.+. .+.++.+ +.....+-.|-|-|+ ++.++ +.+....-
T Consensus 73 ~~~i~~~~~~~--~~~~~~~~~~~i~i~~~---------------~~~~~~e~~~lGTa~al~~a~------~~l~~~~~ 129 (425)
T PRK00725 73 AHSLIRHIQRG--WSFFREELGEFVDLLPA---------------QQRVDEENWYRGTADAVYQNL------DIIRRYDP 129 (425)
T ss_pred HHHHHHHHHhh--hcccccCCCCeEEEeCC---------------cccCCCCccccCcHHHHHHHH------HHHHhcCC
Confidence 88899999752 222111 1111110 001112233567654 33333 33433334
Q ss_pred EEEEEEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecC-CCcccceEEEEEecCCCceecceEEEEecccCccCcC
Q 007226 186 KGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT 264 (612)
Q Consensus 186 kyv~v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~-~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~ 264 (612)
+++.|.+.|++. ..| +-.++-.+...++++.+.+ .+.+ .....-|++.. ..+|+ +.++.|=|.....
T Consensus 130 d~~lVl~gD~l~-~~d--l~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~~~------V~~~~EKp~~~~~ 197 (425)
T PRK00725 130 KYVVILAGDHIY-KMD--YSRMLADHVESGADCTVAC-LEVPREEASAFGVMAV--DENDR------ITAFVEKPANPPA 197 (425)
T ss_pred CEEEEecCCeEe-ccC--HHHHHHHHHHcCCCEEEEE-EecchhhcccceEEEE--CCCCC------EEEEEECCCCccc
Confidence 688999999843 333 3344666666777776654 2221 22235678754 13444 3444442221100
Q ss_pred CCCCCCCCccccccceeeEEEEeHHHHHhhhc
Q 007226 265 RGPFSSNGLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 265 ~~~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
..... ..+-.|+...+|+-+.|.+.+.
T Consensus 198 ---~~~~~--~~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 198 ---MPGDP--DKSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred ---cccCc--cceEEEeeEEEEeHHHHHHHHH
Confidence 00010 1233699999999999877664
No 35
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.28 E-value=0.0089 Score=67.07 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=87.4
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHH
Q 007226 35 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 114 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T 114 (612)
.++..|+||||.||||+...||. ++|+ .|++++++.++++.+. | .-.++|.++. ..+..
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i 64 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKV--LHPV-----AGRPMVAWAVKAARDL--------G---ARKIVVVTGH---GAEQV 64 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCce--ecEE-----CCeeHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHH
Confidence 36788999999999999878998 8887 6899999998887653 2 1256777776 55667
Q ss_pred HHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEec
Q 007226 115 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 193 (612)
Q Consensus 115 ~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~v 193 (612)
.++|+. + .+.+..|+ .|.|-|+ ++.++. .+. ..-..+.|.+.
T Consensus 65 ~~~~~~---~-----~i~~v~~~----------------------~~~Gt~~al~~~~~------~l~-~~~~~~lV~~g 107 (481)
T PRK14358 65 EAALQG---S-----GVAFARQE----------------------QQLGTGDAFLSGAS------ALT-EGDADILVLYG 107 (481)
T ss_pred HHHhcc---C-----CcEEecCC----------------------CcCCcHHHHHHHHH------Hhh-CCCCcEEEEeC
Confidence 666642 1 12222111 1344444 443332 222 12223678899
Q ss_pred CCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCc
Q 007226 194 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGK 245 (612)
Q Consensus 194 DN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~ 245 (612)
|+++...+ .+-.++..+...+.++.+.+ .+.+.+ .+-|++.. ..+|+
T Consensus 108 D~P~i~~~-~l~~ll~~~~~~~~~~ti~~-~~~~~~-~~yG~v~~--d~~g~ 154 (481)
T PRK14358 108 DTPLLRPD-TLRALVADHRAQGSAMTILT-GELPDA-TGYGRIVR--GADGA 154 (481)
T ss_pred CeeccCHH-HHHHHHHHHHhcCCeEEEEE-EEcCCC-CCceEEEE--CCCCC
Confidence 99876541 22234555555566555443 333322 34688754 24554
No 36
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.25 E-value=0.0054 Score=63.82 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=109.3
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHH
Q 007226 38 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 113 (612)
Q Consensus 38 avvlLaGGlGTRLG----~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~ 113 (612)
-.|+||||.||||. ...||- ++|+. .++|++|..++++..+. + .-.++|.|+. +.++.
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~--ll~l~----g~~~li~~~l~~l~~~~-------~---~~~i~vvt~~--~~~~~ 63 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQ--FLKLF----GDKSLLQQTLDRLKGLV-------P---PDRILVVTNE--EYRFL 63 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCce--EeEcC----CCCcHHHHHHHHHhcCC-------C---CCcEEEEech--HHHHH
Confidence 36899999999996 568998 99985 45999999999876642 1 1278888887 34556
Q ss_pred HHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCc-hHhHHHHhcCchhHHHH-CCcEEEEEE
Q 007226 114 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHD-NGRKGATVR 191 (612)
Q Consensus 114 T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhG-dI~~aL~~sGlLd~l~~-~Gikyv~v~ 191 (612)
+.+++++ ++ . .+.+..|+ .|.|-+ .+..++. .+.+ .+-+++.|.
T Consensus 64 v~~~l~~---~~-~--~~~ii~ep----------------------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl 109 (274)
T cd02509 64 VREQLPE---GL-P--EENIILEP----------------------EGRNTAPAIALAAL------YLAKRDPDAVLLVL 109 (274)
T ss_pred HHHHHhh---cC-C--CceEEECC----------------------CCCCcHHHHHHHHH------HHHhcCCCCeEEEe
Confidence 6677754 11 1 11111111 112333 2333332 2222 234789999
Q ss_pred ecCCCccccchhhHHHhhhh---hhcCCceeEEEEeecCCCcccceEEEEEecCC--CceecceEEEEecccCccCcCCC
Q 007226 192 QVSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLD--GKWAYGLSCIEYTEFDKFGITRG 266 (612)
Q Consensus 192 ~vDN~la~~Dp~i~~~~G~~---~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~d--G~~~~~~~vVEYsel~~~~~~~~ 266 (612)
+.|.+....+ .|...+--+ +..+..+.+.+ .+ +.+..+-|.+... .+ |. ...+....|=|+....+.
T Consensus 110 ~~D~~i~~~~-~f~~~l~~~~~~~~~~~~vt~gi-~p-~~~~t~yGyI~~~--~~~~~~---~~~V~~f~EKP~~~~a~~ 181 (274)
T cd02509 110 PSDHLIEDVE-AFLKAVKKAVEAAEEGYLVTFGI-KP-TRPETGYGYIEAG--EKLGGG---VYRVKRFVEKPDLETAKE 181 (274)
T ss_pred cchhcccCHH-HHHHHHHHHHHHHHcCCEEEEEe-ee-cCCCCCeEEEEeC--CcCCCC---ceEEeEEEECcChHHHHH
Confidence 9998875321 111112111 12344455443 32 3455678888541 22 21 023555555554321110
Q ss_pred CCCCCCccccccceeeEEEEeHHHHHhhhcc
Q 007226 267 PFSSNGLQADFPANTNILYVDLASAELVGSS 297 (612)
Q Consensus 267 ~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~~ 297 (612)
-..+| .|-.|...++|+.+.+.+.+++
T Consensus 182 ~~~~g----~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 182 YLESG----NYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred HhhcC----CeEEECceeeeeHHHHHHHHHH
Confidence 01112 2445999999999999999875
No 37
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.25 E-value=0.0042 Score=60.99 Aligned_cols=136 Identities=12% Similarity=0.149 Sum_probs=82.8
Q ss_pred EEecCCccccCC---CCCCCCCceeeCccCCCCCC-cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 40 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 40 vlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gk-s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .-.++|.|+. ..+...
T Consensus 2 vILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~iivv~~~---~~~~i~ 60 (200)
T cd02508 2 IILAGGEGTRLSPLTKKRAKP--AVPF-----GGRYRLIDFPLSNMVNS--------G---IRNVGVLTQY---KSRSLN 60 (200)
T ss_pred EEeCCCCCcccchhhcCCcce--eeEE-----CCeeeeHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHH
Confidence 789999999996 468998 9988 577 9999999887663 3 2368899998 678899
Q ss_pred HHHHHcccCCCCC--CceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEec
Q 007226 116 SLCERLRWFGRGQ--SSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 193 (612)
Q Consensus 116 ~~le~~~~FGl~~--~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~v 193 (612)
++|.+...+|++. ..+... + .......-.|-|.|+-..... +.+.+..-+.+.|.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~g 119 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFIL-P---------------PQQRKGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSG 119 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEe-C---------------cccCCCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecC
Confidence 9998765566531 112111 0 000001234567665433332 2333333477889999
Q ss_pred CCCccccchhhHHHhhhhhhcCCceeE
Q 007226 194 SNVVAATDLTLLALAGIGLHHGKKLGF 220 (612)
Q Consensus 194 DN~la~~Dp~i~~~~G~~~~~~~~~~~ 220 (612)
|++ ...| +-.++-.+.+++.++.+
T Consensus 120 D~v-~~~~--~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 120 DHI-YNMD--YREMLDFHIESGADITV 143 (200)
T ss_pred CEE-EecC--HHHHHHHHHHcCCCEEE
Confidence 984 3333 32345555455544443
No 38
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.23 E-value=0.0069 Score=60.99 Aligned_cols=176 Identities=16% Similarity=0.143 Sum_probs=99.6
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHH
Q 007226 38 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 114 (612)
Q Consensus 38 avvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T 114 (612)
-.|+||||.||||+- ..||. ++|+ .|++++++.++.+.+. | .-.++|.++. ...+..
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~--llpv-----~~~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~~ 61 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQ--LLPV-----YDKPMIYYPLSTLMLA--------G---IREILIISTP--EDLPLF 61 (240)
T ss_pred eEEEEcCcCcccCCccccCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEeCc--chHHHH
Confidence 368999999999975 78998 9988 5899999998887543 3 1256777776 245677
Q ss_pred HHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEec
Q 007226 115 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 193 (612)
Q Consensus 115 ~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~v 193 (612)
.++|.....+++ ++. +.+ ...|.|-|+ ++.++. .++ + +..++.+.
T Consensus 62 ~~~l~~~~~~~~---~i~-~~~---------------------~~~~~G~~~al~~a~~---~~~-----~-~~~lv~~g 107 (240)
T cd02538 62 KELLGDGSDLGI---RIT-YAV---------------------QPKPGGLAQAFIIGEE---FIG-----D-DPVCLILG 107 (240)
T ss_pred HHHHhcccccCc---eEE-Eee---------------------CCCCCCHHHHHHHHHH---hcC-----C-CCEEEEEC
Confidence 888876444443 111 100 112345543 333321 121 1 34567788
Q ss_pred CCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCc
Q 007226 194 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 273 (612)
Q Consensus 194 DN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~ 273 (612)
|+++...| +-.++-.+...+.++.+.+ .+... .+.-|++.. ..+|+ ++++.|=|... .
T Consensus 108 D~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~g~------v~~~~ekp~~~--------~-- 165 (240)
T cd02538 108 DNIFYGQG--LSPILQRAAAQKEGATVFG-YEVND-PERYGVVEF--DENGR------VLSIEEKPKKP--------K-- 165 (240)
T ss_pred CEEEccHH--HHHHHHHHHhcCCCcEEEE-EECCc-hhcCceEEe--cCCCc------EEEEEECCCCC--------C--
Confidence 88754432 3234545555566666554 33222 234677643 23554 34443322110 0
Q ss_pred cccccceeeEEEEeHHHH
Q 007226 274 QADFPANTNILYVDLASA 291 (612)
Q Consensus 274 ~s~f~~Ninnl~~~L~~l 291 (612)
+ ...|++.++|+-+.+
T Consensus 166 -~-~~~~~Giyi~~~~~l 181 (240)
T cd02538 166 -S-NYAVTGLYFYDNDVF 181 (240)
T ss_pred -C-CeEEEEEEEECHHHH
Confidence 1 125899999998766
No 39
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.20 E-value=0.0076 Score=59.43 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=97.0
Q ss_pred EEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+|+||||.|+||+ ...||. ++|+ .|++++++.++++.... +. .++|.++. ..+...
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~--ll~~-----~g~pli~~~l~~l~~~~----------~~-~iivv~~~---~~~~i~ 59 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKP--MLKV-----GGKPILETIIDRFIAQG----------FR-NFYISVNY---LAEMIE 59 (220)
T ss_pred CEEecCCCccccCcccCCCCCc--cCeE-----CCcchHHHHHHHHHHCC----------Cc-EEEEECcc---CHHHHH
Confidence 4789999999997 367898 8887 68999999999887642 11 45677776 566777
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
+++.+...+|+ ++.+..| -.|.|-|+...++.. ..-+.+.|...|+
T Consensus 60 ~~~~~~~~~~~---~i~~~~~----------------------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~ 105 (220)
T cd06426 60 DYFGDGSKFGV---NISYVRE----------------------DKPLGTAGALSLLPE---------KPTDPFLVMNGDI 105 (220)
T ss_pred HHHCCccccCc---cEEEEEC----------------------CCCCcchHHHHHHHh---------hCCCCEEEEcCCE
Confidence 77775332232 2221111 013354555443332 1146778888886
Q ss_pred CccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCccc
Q 007226 196 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 275 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s 275 (612)
+. .. .+-.++-.+...+.+..+.+ . +......-|++.. .+|+ ++++.+= + . . +
T Consensus 106 i~-~~--~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~g~~~~---d~~~------v~~~~ek-----~----~-~---~ 158 (220)
T cd06426 106 LT-NL--NYEHLLDFHKENNADATVCV-R-EYEVQVPYGVVET---EGGR------ITSIEEK-----P----T-H---S 158 (220)
T ss_pred ee-cc--CHHHHHHHHHhcCCCEEEEE-E-EcCCCCcceEEEE---CCCE------EEEEEEC-----C----C-C---C
Confidence 32 22 33344555455555555443 2 2223334566532 3343 4444321 1 0 0 1
Q ss_pred cccceeeEEEEeHHHHHh
Q 007226 276 DFPANTNILYVDLASAEL 293 (612)
Q Consensus 276 ~f~~Ninnl~~~L~~l~~ 293 (612)
.-.|++..+|+-+.++.
T Consensus 159 -~~~~~Giy~~~~~~~~~ 175 (220)
T cd06426 159 -FLVNAGIYVLEPEVLDL 175 (220)
T ss_pred -CeEEEEEEEEcHHHHhh
Confidence 11488999999887654
No 40
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.17 E-value=0.035 Score=55.88 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=102.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+++.|+||||.++||+ +|. ++|+ .|++++++.++++.... .-.++|-| . ++.+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~--Ll~i-----~Gkpll~~~l~~l~~~~-----------i~~ivvv~-~----~~~i~ 55 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKP--LADI-----GGKPMIVRVYERASKAG-----------ADRVVVAT-D----DERIA 55 (245)
T ss_pred ceEEEEecCCCCCCCC---CCc--cccc-----CCcCHHHHHHHHHHhcC-----------CCeEEEEC-C----cHHHH
Confidence 5788999999999996 688 8887 79999999999886642 11334433 2 36677
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
+++.+ +|. .+. + . . ...+.|-+.+..++..-. ..+-.++.+.+.|+
T Consensus 56 ~~~~~---~~~---~v~-~--------~-~------------~~~~~gt~~~~~~~~~~~------~~~~~~vlv~~~D~ 101 (245)
T PRK05450 56 DAVEA---FGG---EVV-M--------T-S------------PDHPSGTDRIAEAAAKLG------LADDDIVVNVQGDE 101 (245)
T ss_pred HHHHH---cCC---EEE-E--------C-C------------CcCCCchHHHHHHHHhcC------CCCCCEEEEecCCC
Confidence 77754 222 111 1 0 0 011345555554443211 11346789999999
Q ss_pred CccccchhhHHHhhhhhhcCCceeEEEEeec----CCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCC
Q 007226 196 VVAATDLTLLALAGIGLHHGKKLGFASCKRS----SGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSN 271 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK----~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg 271 (612)
++...+. +-.++-.....+.++.+.+..+. ......++++.. .+|+ +++..+-+.....+ ..+++
T Consensus 102 Pli~~~~-l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d---~~g~------v~~~~e~~~~~~~~-~~~~~ 170 (245)
T PRK05450 102 PLIPPEI-IDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLD---ADGR------ALYFSRAPIPYGRD-AFADS 170 (245)
T ss_pred CCCCHHH-HHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeC---CCCc------EEEecCCCCCCCCC-ccccc
Confidence 9876421 11233333334456555542221 112223666532 4565 45666655211000 01111
Q ss_pred CccccccceeeEEEEeHHHHHhhhc
Q 007226 272 GLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 272 ~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
+ ....-.|+....|+-+.++.+.+
T Consensus 171 ~-~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 171 A-PTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred c-CccccEEEEEEecCHHHHHHHHh
Confidence 1 01233599999999888877653
No 41
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=97.13 E-value=0.022 Score=57.11 Aligned_cols=178 Identities=13% Similarity=0.188 Sum_probs=104.0
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+... | --.++|.|+. .++.+.
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---~~~v~iv~~~---~~~~~~ 61 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKP--LVEF-----CNKPMIEHQIEALAKA--------G---VKEIILAVNY---RPEDMV 61 (233)
T ss_pred EEEecCCCccccCccccCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C---CcEEEEEeee---CHHHHH
Confidence 58899999999974 68898 8887 6889999999988664 2 1257888887 678888
Q ss_pred HHHHHcc-cCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEec
Q 007226 116 SLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 193 (612)
Q Consensus 116 ~~le~~~-~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~v 193 (612)
+++.+.. .+|+ ++ ... ....|.|-|+ ++.++ +.+. ..-+-+.+.+.
T Consensus 62 ~~l~~~~~~~~~---~i------------------~~~----~~~~~~G~~~al~~a~------~~~~-~~~~~~lv~~~ 109 (233)
T cd06425 62 PFLKEYEKKLGI---KI------------------TFS----IETEPLGTAGPLALAR------DLLG-DDDEPFFVLNS 109 (233)
T ss_pred HHHhcccccCCe---EE------------------Eec----cCCCCCccHHHHHHHH------HHhc-cCCCCEEEEeC
Confidence 8887431 1221 11 110 0122456543 33322 2222 21123566677
Q ss_pred CCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecC-CCceecceEEEEecccCccCcCCCCCCCCC
Q 007226 194 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFSSNG 272 (612)
Q Consensus 194 DN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~-dG~~~~~~~vVEYsel~~~~~~~~~~~dg~ 272 (612)
|++. ..| +-.++..+...+++..+.+ .+... ..+-|++.. .. +|+ ++++.|=|...
T Consensus 110 D~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~~~~------v~~~~ekp~~~---------- 166 (233)
T cd06425 110 DVIC-DFP--LAELLDFHKKHGAEGTILV-TKVED-PSKYGVVVH--DENTGR------IERFVEKPKVF---------- 166 (233)
T ss_pred CEee-CCC--HHHHHHHHHHcCCCEEEEE-EEcCC-ccccCeEEE--cCCCCE------EEEEEECCCCC----------
Confidence 7653 233 3345666667777766664 43332 335677754 12 344 56665433321
Q ss_pred ccccccceeeEEEEeHHHHHhh
Q 007226 273 LQADFPANTNILYVDLASAELV 294 (612)
Q Consensus 273 ~~s~f~~Ninnl~~~L~~l~~~ 294 (612)
.+.+ .|+..++|+-+.++.+
T Consensus 167 -~~~~-~~~Giyi~~~~~l~~l 186 (233)
T cd06425 167 -VGNK-INAGIYILNPSVLDRI 186 (233)
T ss_pred -CCCE-EEEEEEEECHHHHHhc
Confidence 0111 5999999998887554
No 42
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=97.06 E-value=0.026 Score=60.39 Aligned_cols=175 Identities=17% Similarity=0.198 Sum_probs=100.3
Q ss_pred EEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | .-.++|+|+. ...+...
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~--l~pv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~i~ 61 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQ--LIPV-----ANKPILQYAIEDLAEA--------G---ITDIGIVVGP--VTGEEIK 61 (353)
T ss_pred EEEECCcCcCccCccccCCCcc--ccEE-----CCEeHHHHHHHHHHHC--------C---CCEEEEEeCC--CCHHHHH
Confidence 4789999999997 478998 8887 6889999998877553 2 2257888887 3778888
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~vD 194 (612)
++|.+...|++ ++.+..|. .|.|-++ ++.++. .+. . +-+.+.+.|
T Consensus 62 ~~~~~~~~~~~---~~~~~~~~----------------------~~~G~~~al~~a~~------~l~-~--~~~li~~gD 107 (353)
T TIGR01208 62 EIVGEGERFGA---KITYIVQG----------------------EPLGLAHAVYTARD------FLG-D--DDFVVYLGD 107 (353)
T ss_pred HHHhcccccCc---eEEEEECC----------------------CCCCHHHHHHHHHH------hcC-C--CCEEEEECC
Confidence 88876544543 22222221 2455544 333332 221 1 234566778
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
+++ .. .+-.++-.+...+++..+.+ .+...+ ..-|++.. .++. .++++.+-|... .
T Consensus 108 ~~~-~~--~l~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~~~~---~~~~-----~v~~~~ekp~~~-------~---- 163 (353)
T TIGR01208 108 NLI-QD--GISRFVKSFEEKDYDALILL-TKVRDP-TAFGVAVL---EDGK-----RILKLVEKPKEP-------P---- 163 (353)
T ss_pred eec-Cc--cHHHHHHHHHhcCCCcEEEE-EECCCh-hhCeEEEE---cCCC-----cEEEEEECCCCC-------C----
Confidence 865 33 23344555666677766554 333333 23566543 3332 233333322211 0
Q ss_pred ccccceeeEEEEeHHHHH
Q 007226 275 ADFPANTNILYVDLASAE 292 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l~ 292 (612)
+ -..|+...+|+-.+++
T Consensus 164 ~-~~~~~Giy~~~~~l~~ 180 (353)
T TIGR01208 164 S-NLAVVGLYMFRPLIFE 180 (353)
T ss_pred c-cceEEEEEEECHHHHH
Confidence 1 1148899999984443
No 43
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=97.05 E-value=0.033 Score=56.81 Aligned_cols=181 Identities=12% Similarity=0.167 Sum_probs=102.7
Q ss_pred EEecCC--ccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHH
Q 007226 40 IYPLGG--SADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 114 (612)
Q Consensus 40 vlLaGG--lGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T 114 (612)
|+|||| .||||.- ..||. ++|+ .|++++++.++.+..+. | .-.++|.+.. ..+.+
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~--llpv-----~g~plI~~~l~~l~~~~-------g---i~~i~iv~~~---~~~~i 61 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKP--LFPV-----AGKPMIHHHIEACAKVP-------D---LKEVLLIGFY---PESVF 61 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcc--cCeE-----CCeeHHHHHHHHHHhcC-------C---CcEEEEEecC---CHHHH
Confidence 678888 8999986 78998 8887 68899999998876531 2 1135666665 67888
Q ss_pred HHHHHHcc-cCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEe
Q 007226 115 TSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQ 192 (612)
Q Consensus 115 ~~~le~~~-~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~ 192 (612)
.+++.+.. .+|+ .+.+..| ..|-|-|+ ++.+. +.+....-+++.|.+
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~~----------------------~~~~Gt~~al~~a~------~~l~~~~~~~~lv~~ 110 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQE----------------------YKPLGTAGGLYHFR------DQILAGNPSAFFVLN 110 (257)
T ss_pred HHHHHhcccccCc---eEEEecC----------------------CccCCcHHHHHHHH------HHhhccCCCCEEEEc
Confidence 88887542 2232 1211111 12344444 33322 223222246788999
Q ss_pred cCCCccccchhhHHHhhhhhhcCCceeEEEEeecC-CCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCC
Q 007226 193 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSN 271 (612)
Q Consensus 193 vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~-~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg 271 (612)
.|++. ..|. -.++-.+.+.++++.+.+ .+.. .....-|++... ..+|+ +.++.|=|... .
T Consensus 111 gD~~~-~~dl--~~~~~~h~~~~~~~tl~~-~~~~~~~~~~yg~v~~d-~~~g~------v~~~~Ekp~~~--------~ 171 (257)
T cd06428 111 ADVCC-DFPL--QELLEFHKKHGASGTILG-TEASREQASNYGCIVED-PSTGE------VLHYVEKPETF--------V 171 (257)
T ss_pred CCeec-CCCH--HHHHHHHHHcCCCEEEEE-EEccccccccccEEEEe-CCCCe------EEEEEeCCCCc--------c
Confidence 99873 3442 244666666677766554 3221 122345776431 02344 34444322210 0
Q ss_pred CccccccceeeEEEEeHHHHHhh
Q 007226 272 GLQADFPANTNILYVDLASAELV 294 (612)
Q Consensus 272 ~~~s~f~~Ninnl~~~L~~l~~~ 294 (612)
....|+...+|+-+.+..+
T Consensus 172 ----~~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 172 ----SDLINCGVYLFSPEIFDTI 190 (257)
T ss_pred ----cceEEEEEEEECHHHHHHH
Confidence 1236999999999877543
No 44
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=97.02 E-value=0.022 Score=60.92 Aligned_cols=196 Identities=11% Similarity=0.119 Sum_probs=107.3
Q ss_pred EEecCCccccCCC---CCCCCCceeeCccCCCCCC-cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 40 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 40 vlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gk-s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
|+||||.||||+- +.||. ++|+ .|+ +++++.++.+... | --.++|.+.. ..+...
T Consensus 2 iILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKP--AVPF-----GGKYRIIDFPLSNCINS--------G---IRRIGVLTQY---KSHSLN 60 (361)
T ss_pred EEeCCCCCCccchhhhCCccc--ccee-----cceeeEeeehhhhhhhc--------C---CceEEEEecc---ChHHHH
Confidence 7899999999983 68998 9888 578 7999998887664 3 1257888887 566788
Q ss_pred HHHHHcccCCCCC---CceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEE
Q 007226 116 SLCERLRWFGRGQ---SSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVR 191 (612)
Q Consensus 116 ~~le~~~~FGl~~---~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~ 191 (612)
++|.+. +++.. ..+.++ |.. ....-...|.|.|+ ++.++ +.+....-+++.|.
T Consensus 61 ~~~~~~--~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~Gt~~al~~a~------~~~~~~~~~~~lv~ 117 (361)
T TIGR02091 61 RHIQRG--WDFDGFIDGFVTLL-PAQ--------------QRESGTDWYQGTADAVYQNL------DLIEDYDPEYVLIL 117 (361)
T ss_pred HHHHhc--cCccCccCCCEEEe-CCc--------------ccCCCCccccCcHHHHHHHH------HHHHhcCCCEEEEe
Confidence 888752 22211 111111 000 00011223467654 33333 22222223678889
Q ss_pred ecCCCccccchhhHHHhhhhhhcCCceeEEEEeecC-CCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCC
Q 007226 192 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 270 (612)
Q Consensus 192 ~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~-~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~d 270 (612)
+.|++. .. .+..++-.+..++.+..+.+ .+.+ ......|++.. ..+|+ +.++.|=|..... ..
T Consensus 118 ~gD~l~-~~--~l~~~l~~~~~~~~~~ti~~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~~~----~~ 181 (361)
T TIGR02091 118 SGDHIY-KM--DYEKMLDYHIESGADVTIAC-IPVPRKEASRFGVMQV--DEDGR------IVDFEEKPANPPS----IP 181 (361)
T ss_pred cCCEEE-cC--CHHHHHHHHHHcCCCEEEEE-EecChHhcccccEEEE--CCCCC------EEEEEECCCCccc----cc
Confidence 999843 23 23334544445555544443 2222 12334677754 12343 4555543311100 00
Q ss_pred CCccccccceeeEEEEeHHHHHhhhc
Q 007226 271 NGLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 271 g~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
+. ...+-.|+..+.|+-+.+.+.++
T Consensus 182 ~~-~~~~~~~~Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 182 GM-PDFALASMGIYIFDKDVLKELLE 206 (361)
T ss_pred cc-ccccEEeeeEEEEcHHHHHHHHH
Confidence 10 11234599999999988876654
No 45
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.01 E-value=0.0011 Score=65.24 Aligned_cols=61 Identities=21% Similarity=0.415 Sum_probs=48.3
Q ss_pred EEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHHH
Q 007226 38 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 117 (612)
Q Consensus 38 avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~~ 117 (612)
..|+||||.|||||. .||. ++|+ .|++++++.++.+.... .-.+++-+|. .++.+..+
T Consensus 2 ~aIILAgG~gsRmg~-~~K~--Ll~i-----~GkplI~~vi~~l~~~~-----------i~~I~Vv~~~---~~~~~~~~ 59 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKP--LIEV-----CGRCLIDHVLSPLLKSK-----------VNNIIIATSP---HTPKTEEY 59 (183)
T ss_pred eEEEECCccCccCCC-CCce--EeEE-----CCEEHHHHHHHHHHhCC-----------CCEEEEEeCC---CHHHHHHH
Confidence 468999999999985 7888 8887 68999999999886532 1256788887 67788888
Q ss_pred HHH
Q 007226 118 CER 120 (612)
Q Consensus 118 le~ 120 (612)
+++
T Consensus 60 l~~ 62 (183)
T TIGR00454 60 INS 62 (183)
T ss_pred Hhh
Confidence 864
No 46
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.99 E-value=0.019 Score=63.32 Aligned_cols=177 Identities=14% Similarity=0.096 Sum_probs=102.2
Q ss_pred EEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHHH
Q 007226 38 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 117 (612)
Q Consensus 38 avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~~ 117 (612)
-.|+||||.||||+...||- ++|+ .|++++++.++.+... +. .++|.++. ..+.+.++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~--l~~v-----~gkpli~~~l~~l~~~--------~~----~i~vv~~~---~~~~i~~~ 59 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKV--LHKI-----SGKPMINWVIDTAKKV--------AQ----KVGVVLGH---EAELVKKL 59 (448)
T ss_pred eEEEECCCCCccCCCCCCce--eeEE-----CCeeHHHHHHHHHHhc--------CC----cEEEEeCC---CHHHHHHh
Confidence 35889999999999888998 8887 6899999999876652 21 35666665 34555555
Q ss_pred HHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCc-hHhHHHHhcCchhHHHHCCcEEEEEEecCCC
Q 007226 118 CERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 196 (612)
Q Consensus 118 le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhG-dI~~aL~~sGlLd~l~~~Gikyv~v~~vDN~ 196 (612)
+.. .+.++.|+ .|.|-+ .++.++. .+.. -+++++.+.|++
T Consensus 60 ~~~---------~~~~~~~~----------------------~~~g~~~ai~~a~~------~l~~--~~~vlv~~gD~p 100 (448)
T PRK14357 60 LPE---------WVKIFLQE----------------------EQLGTAHAVMCARD------FIEP--GDDLLILYGDVP 100 (448)
T ss_pred ccc---------ccEEEecC----------------------CCCChHHHHHHHHH------hcCc--CCeEEEEeCCcc
Confidence 431 12222221 122433 3444432 2211 368999999998
Q ss_pred ccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcccc
Q 007226 197 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 276 (612)
Q Consensus 197 la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s~ 276 (612)
+...+ .+-.++-.+.+.++++.+.+ .+...+ ..-|++.. .+|+ +..+|...-+.. . ...
T Consensus 101 ~i~~~-~i~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~v~~---d~g~----v~~~e~~~~~~~---------~--~~~ 159 (448)
T PRK14357 101 LISEN-TLKRLIEEHNRKGADVTILV-ADLEDP-TGYGRIIR---DGGK----YRIVEDKDAPEE---------E--KKI 159 (448)
T ss_pred cCCHH-HHHHHHHHHHhcCCeEEEEE-EEcCCC-CCcEEEEE---cCCe----EEEEECCCCChH---------H--hcC
Confidence 75431 22223444555566666554 333323 33566643 3665 555664321110 0 011
Q ss_pred ccceeeEEEEeHHHHHhhhc
Q 007226 277 FPANTNILYVDLASAELVGS 296 (612)
Q Consensus 277 f~~Ninnl~~~L~~l~~~l~ 296 (612)
+-.|+...+|+-+.+.+.+.
T Consensus 160 ~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 160 KEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred cEEEeEEEEEEHHHHHHHHH
Confidence 33599999999888777664
No 47
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.93 E-value=0.0013 Score=64.10 Aligned_cols=61 Identities=20% Similarity=0.401 Sum_probs=49.2
Q ss_pred EEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHHH
Q 007226 38 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 117 (612)
Q Consensus 38 avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~~ 117 (612)
..|++|||.|||||. .-|- ++++ +||.+++..++.++.. .+ -+++-||. ++..|++|
T Consensus 2 ~~iiMAGGrGtRmg~-~EKP--lleV-----~GkpLI~~v~~al~~~-------~d-----~i~v~isp---~tp~t~~~ 58 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKP--LLEV-----CGKPLIDRVLEALRKI-------VD-----EIIVAISP---HTPKTKEY 58 (177)
T ss_pred ceEEecCCcccccCC-CcCc--chhh-----CCccHHHHHHHHHHhh-------cC-----cEEEEeCC---CCHhHHHH
Confidence 468999999999995 3344 8877 8999999988877662 12 47889998 89999999
Q ss_pred HHHc
Q 007226 118 CERL 121 (612)
Q Consensus 118 le~~ 121 (612)
+++-
T Consensus 59 ~~~~ 62 (177)
T COG2266 59 LESV 62 (177)
T ss_pred HHhc
Confidence 9973
No 48
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=96.86 E-value=0.027 Score=57.42 Aligned_cols=189 Identities=13% Similarity=0.120 Sum_probs=102.0
Q ss_pred EEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+|+||||.||||. .+.||. ++|+ .|++++++.++.+.+. | .-.++|-++. ..+.+.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~--llpv-----~~~p~i~~~~~~~~~~--------g---i~~i~iv~~~---~~~~i~ 59 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKP--MVEI-----GGRPILWHIMKIYSHY--------G---HNDFILCLGY---KGHVIK 59 (253)
T ss_pred CEEEecCCccccCCccCCCCce--EEEE-----CCEEHHHHHHHHHHhC--------C---CceEEEECCC---CHHHHH
Confidence 3789999999997 368999 9988 6889998877666543 3 1257777876 778899
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCC----cccCCCCch-HhHHHHhcCchhHHHHCCcEEEEE
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAP----VCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATV 190 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l----~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v 190 (612)
+++++...+|. ++.+-.|..--.+...+ .+++.+ ...|-|.|+ ++.++. .+ ..+ +++.+
T Consensus 60 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~t~~al~~a~~------~~-~~~-~~~lv 123 (253)
T cd02524 60 EYFLNYFLHNS---DVTIDLGTNRIELHNSD-----IEDWKVTLVDTGLNTMTGGRLKRVRR------YL-GDD-ETFML 123 (253)
T ss_pred HHHHhhhhhcC---ceeEeecccceeeeccc-----ccccceeecccCcccccHHHHHHHHH------hc-CCC-CeEEE
Confidence 99988654442 22221111000000000 001110 122455544 444332 12 111 78999
Q ss_pred EecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCC
Q 007226 191 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 270 (612)
Q Consensus 191 ~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~d 270 (612)
.+.|++. ..|- -.++-.+...++++.+.. ++ +...-|++.. ..+|+ ++++.+=|..
T Consensus 124 ~~gD~i~-~~dl--~~ll~~h~~~~~~~tl~~-~~---~~~~~g~v~~--d~~g~------V~~~~ekp~~--------- 179 (253)
T cd02524 124 TYGDGVS-DVNI--NALIEFHRSHGKLATVTA-VH---PPGRFGELDL--DDDGQ------VTSFTEKPQG--------- 179 (253)
T ss_pred EcCCEEE-CCCH--HHHHHHHHHcCCCEEEEE-ec---CCCcccEEEE--CCCCC------EEEEEECCCC---------
Confidence 9999864 3333 233545555566665543 33 2233566643 13455 3444432211
Q ss_pred CCccccccceeeEEEEeHHHHH
Q 007226 271 NGLQADFPANTNILYVDLASAE 292 (612)
Q Consensus 271 g~~~s~f~~Ninnl~~~L~~l~ 292 (612)
.+ . ..|+..++|+-+.++
T Consensus 180 ~~---~-~i~~Giyi~~~~l~~ 197 (253)
T cd02524 180 DG---G-WINGGFFVLEPEVFD 197 (253)
T ss_pred CC---c-eEEEEEEEECHHHHH
Confidence 00 1 147888888866653
No 49
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.82 E-value=0.11 Score=52.22 Aligned_cols=185 Identities=13% Similarity=0.153 Sum_probs=99.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
++..|+||||.++||| +|. ++|+ .|++++++.++++++.. | +.-++..+ +++.+.
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~--l~~i-----~gkpll~~~l~~l~~~~-------~----i~~ivvv~----~~~~i~ 55 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKP--LADI-----AGKPMIQHVYERAKKAK-------G----LDEVVVAT----DDERIA 55 (239)
T ss_pred CEEEEEecCCCCCCCC---CCC--Cccc-----CCcCHHHHHHHHHHhCC-------C----CCEEEEEC----CcHHHH
Confidence 4578999999999996 688 8887 79999999999887641 2 12223333 236777
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
+++.+ ++ +.+..+ . ...+.|.|++..++.. + ....+++.+.+.|+
T Consensus 56 ~~~~~---~~-----~~~~~~--------~------------~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~ 100 (239)
T cd02517 56 DAVES---FG-----GKVVMT--------S------------PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDE 100 (239)
T ss_pred HHHHH---cC-----CEEEEc--------C------------cccCchhHHHHHHHHh------c-CCCCCEEEEecCCC
Confidence 77754 22 111111 0 0113456666665532 1 11247899999999
Q ss_pred CccccchhhHHHhhhhhhc-CCceeEEEEeecCCCc----cc-ceEEEEEecCCCceecceEEEEecccCccCcCCCCCC
Q 007226 196 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSSGAT----EG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 269 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~~-~~~~~~~~v~rK~~~~----e~-vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~ 269 (612)
++...+ .+-.++-.+... +.++.+.+ .+.+.+. .+ .++... .+|. +++..+-+... . .+..
T Consensus 101 Pli~~~-~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~---~~~~------v~~~~~~~~~~-~-~~~~ 167 (239)
T cd02517 101 PLIPPE-MIDQVVAALKDDPGVDMATLA-TPISDEEELFNPNVVKVVLD---KDGY------ALYFSRSPIPY-P-RDSS 167 (239)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCCEEEEE-EEcCCHHHccCCCCCEEEEC---CCCC------EEEecCCCCCC-C-CCCC
Confidence 887641 111223222222 34444443 3322211 12 344432 4554 44555432110 0 0101
Q ss_pred CCCccccccceeeEEEEeHHHHHhhhc
Q 007226 270 SNGLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 270 dg~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
.. .+ .-.|+....|+-+.++.+.+
T Consensus 168 -~~-~~-~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 168 -ED-FP-YYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred -CC-Cc-eeEEEEEEEECHHHHHHHHh
Confidence 10 11 12499999999998887653
No 50
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.75 E-value=0.0022 Score=64.56 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=49.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+++.|+||||.|+|||.+.||- ++++ .|++++++.+++++... ..-.++|.|++ .......
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~--l~~l-----~gkpll~~~i~~~~~~~----------~~~~ivVv~~~--~~~~~~~ 62 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKM--WLDL-----VGEPIFIHALRPFLADN----------RCSKIIIVTQA--QERKHVQ 62 (230)
T ss_pred ceEEEEECCeeccccCCCCCcc--eeEE-----CCeEHHHHHHHHHHcCC----------CCCEEEEEeCh--hhHHHHH
Confidence 3688999999999999888998 8887 79999999999876542 11256677766 3445555
Q ss_pred HHHHH
Q 007226 116 SLCER 120 (612)
Q Consensus 116 ~~le~ 120 (612)
+++++
T Consensus 63 ~~~~~ 67 (230)
T PRK13385 63 DLMKQ 67 (230)
T ss_pred HHHHh
Confidence 56654
No 51
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.71 E-value=0.054 Score=59.82 Aligned_cols=182 Identities=14% Similarity=0.160 Sum_probs=98.9
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
+..|+||||.||||+...||. ++|+ .|++++++.++++.+. | .-.++|.++. ..+...+
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~--ll~i-----~Gkpli~~~l~~l~~~--------g---i~~iivvv~~---~~~~i~~ 61 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKV--LHKV-----CGKPMVEHVVDSVKKA--------G---IDKIVTVVGH---GAEEVKE 61 (458)
T ss_pred ceEEEEeCCCCcccCCCCChh--hCEe-----CCccHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHHHH
Confidence 457899999999999888998 8887 6899999999988653 2 1246667776 4555555
Q ss_pred HHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 117 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 117 ~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
++.+. +.+ +++. .+.|.++ ++.++. .+.+ .-+++++.+.|+
T Consensus 62 ~~~~~---------~~~----------------~~~~------~~~g~~~al~~a~~------~l~~-~~d~vlv~~~D~ 103 (458)
T PRK14354 62 VLGDR---------SEF----------------ALQE------EQLGTGHAVMQAEE------FLAD-KEGTTLVICGDT 103 (458)
T ss_pred HhcCC---------cEE----------------EEcC------CCCCHHHHHHHHHH------Hhcc-cCCeEEEEECCc
Confidence 54321 111 1110 1334433 444332 2221 126899999999
Q ss_pred CccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCccc
Q 007226 196 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 275 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s 275 (612)
++...+ .+-.++-.....+.+....+ .+...+ ...|++.. ..+|+ ....+|.....+ . . ..
T Consensus 104 p~i~~~-~l~~li~~~~~~~~~~t~~~-~~~~~~-~~~g~v~~--d~~~~---V~~~~ek~~~~~--------~-~--~~ 164 (458)
T PRK14354 104 PLITAE-TLKNLIDFHEEHKAAATILT-AIAENP-TGYGRIIR--NENGE---VEKIVEQKDATE--------E-E--KQ 164 (458)
T ss_pred cccCHH-HHHHHHHHHHhcCCceEEEE-EEcCCC-CCceEEEE--cCCCC---EEEEEECCCCCh--------H-H--hc
Confidence 876542 11122333333344444333 222222 33565543 13444 123334322111 0 0 01
Q ss_pred cccceeeEEEEeHHHHHhhhc
Q 007226 276 DFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 276 ~f~~Ninnl~~~L~~l~~~l~ 296 (612)
.+..|+...+|+-+.+.+.++
T Consensus 165 ~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 165 IKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred CcEEEEEEEEEEHHHHHHHHH
Confidence 233599999999887776654
No 52
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=96.67 E-value=0.004 Score=65.79 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=52.1
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchH
Q 007226 36 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 112 (612)
Q Consensus 36 k~avvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~ 112 (612)
.+-+|+||||.||||. ..-||- ++|| .|+++++++++.+... | .-.++|.|+. ..+
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKp--LvpV-----~gkPiI~~vl~~l~~~--------G---i~~ivivv~~---~~~ 61 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SKN 61 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEecC---ChH
Confidence 5678999999999998 467898 8888 6899999999888754 3 2257888887 778
Q ss_pred HHHHHHHH
Q 007226 113 RITSLCER 120 (612)
Q Consensus 113 ~T~~~le~ 120 (612)
...++|..
T Consensus 62 ~i~~~~~~ 69 (297)
T TIGR01105 62 AVENHFDT 69 (297)
T ss_pred HHHHHHhc
Confidence 89999964
No 53
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=96.57 E-value=0.0029 Score=64.25 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=47.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
+++|+||||.|+|||.+.||- .+++ .|++++++.++.+++.. . .--+++..+. +..+.+++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQ--f~~l-----~Gkpvl~~tl~~f~~~~-----~-----i~~Ivvv~~~--~~~~~~~~ 61 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQ--FLEL-----GGKPVLEYTLEAFLASP-----E-----IDEIVVVVPP--EDIDYVEE 61 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GG--GSEE-----TTEEHHHHHHHHHHTTT-----T-----ESEEEEEESG--GGHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCe--eeEE-----CCeEeHHHHHHHHhcCC-----C-----CCeEEEEecc--hhHHHHHH
Confidence 578999999999999999998 8877 79999999988876643 1 1135666666 45567777
Q ss_pred HHHH
Q 007226 117 LCER 120 (612)
Q Consensus 117 ~le~ 120 (612)
++.+
T Consensus 62 ~~~~ 65 (221)
T PF01128_consen 62 LLSK 65 (221)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 7665
No 54
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.56 E-value=0.0032 Score=59.94 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=39.3
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCC
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 106 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~ 106 (612)
++.|+||||.|+|||- +|. ++|+ .|++++++.++++... + .-+++|-|+.
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~--l~~~-----~g~~li~~~i~~l~~~--------~---~~~i~vv~~~ 50 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKL--LLPL-----DGKPLLRHALDAALAA--------G---LSRVIVVLGA 50 (186)
T ss_pred CeEEEECCCCCCCCCC--Cce--eCee-----CCeeHHHHHHHHHHhC--------C---CCcEEEECCC
Confidence 3678999999999985 888 8887 7999999999987653 1 1256777766
No 55
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.53 E-value=0.0039 Score=64.45 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=37.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 84 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~l 84 (612)
+++.|+||||.|+|||...||- .+++ .|++++++.++.+...
T Consensus 24 ~i~aIILAAG~gsRmg~~~pKq--ll~l-----~Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 24 SVSVILLAGGVGKRMGANMPKQ--YLPL-----LGQPIALYSLYTFARM 65 (252)
T ss_pred ceEEEEEcccccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHHhC
Confidence 6889999999999999888998 8887 6999999998877664
No 56
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.52 E-value=0.048 Score=60.50 Aligned_cols=180 Identities=13% Similarity=0.152 Sum_probs=100.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
++..|+||||.||||+...||. ++|+ .|+++++..++++.+. | .-.+++.++. ..+...
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~--l~~i-----~gkpli~~~i~~l~~~--------g---i~~i~vv~~~---~~~~i~ 63 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKV--LHTL-----AGKPMVQHVIDAANEL--------G---AQHVHLVYGH---GGDLLK 63 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChh--ccee-----CChhHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5788999999999999888998 8887 6899999999887543 2 1256777776 455565
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch-HhHHHHhcCchhHHHHCCcEEEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd-I~~aL~~sGlLd~l~~~Gikyv~v~~vD 194 (612)
+++.. ..+.+ +++. .|.|-++ ++.++. .+. .-+++.|.+.|
T Consensus 64 ~~~~~--------~~~~~----------------i~~~------~~~Gt~~al~~a~~------~l~--~~~~vlV~~gD 105 (456)
T PRK09451 64 QTLAD--------EPLNW----------------VLQA------EQLGTGHAMQQAAP------FFA--DDEDILMLYGD 105 (456)
T ss_pred Hhhcc--------CCcEE----------------EECC------CCCCcHHHHHHHHH------hhc--cCCcEEEEeCC
Confidence 55542 12222 1110 2445444 444432 121 23688999999
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
.++...+ .+-.++..+ ......+.+ .+-..+ ..-|++.. .+|+ ...++|....++. .. .
T Consensus 106 ~P~i~~~-~i~~l~~~~--~~~~~~i~~-~~~~~~-~~yG~v~~---~~g~---V~~~~EKp~~~~~---------~~-~ 164 (456)
T PRK09451 106 VPLISVE-TLQRLRDAK--PQGGIGLLT-VKLDNP-TGYGRITR---ENGK---VVGIVEQKDATDE---------QR-Q 164 (456)
T ss_pred cccCCHH-HHHHHHHHh--hcCCEEEEE-EEcCCC-CCceEEEe---cCCe---EEEEEECCCCChH---------Hh-h
Confidence 9875431 122223222 222223332 222233 23566533 4555 1234443322111 00 0
Q ss_pred ccccceeeEEEEeHHHHHhhhc
Q 007226 275 ADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
+. -.|+...+|+-+.+.+.++
T Consensus 165 ~~-~~~~GiYi~~~~~l~~~l~ 185 (456)
T PRK09451 165 IQ-EINTGILVANGADLKRWLA 185 (456)
T ss_pred cc-EEEEEEEEEEHHHHHHHHH
Confidence 11 1499999999888877664
No 57
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.51 E-value=0.0064 Score=60.28 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=50.1
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | --.++|.|.. ..+.+.
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~--llpi-----~g~~li~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKP--LVPV-----AGKPLIDHALDRLAAA--------G---IRRIVVNTHH---LADQIE 60 (221)
T ss_pred EEEEcCCCCCccccccCCCCCc--eeeE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEccC---CHHHHH
Confidence 47899999999975 68898 8887 6889999999888664 2 1245666765 788888
Q ss_pred HHHHHcccCCC
Q 007226 116 SLCERLRWFGR 126 (612)
Q Consensus 116 ~~le~~~~FGl 126 (612)
+++.+ .++|+
T Consensus 61 ~~~~~-~~~~~ 70 (221)
T cd06422 61 AHLGD-SRFGL 70 (221)
T ss_pred HHHhc-ccCCc
Confidence 88876 44443
No 58
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.50 E-value=0.032 Score=55.58 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=76.7
Q ss_pred EEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+.+. | --.++|.++. .-.+.+.
T Consensus 3 aVILAgG~g~R~~plt~~~pK~--Llpv-----~g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~~i~ 62 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKA--LLPV-----ANKPMIWYPLDWLEKA--------G---FEDVIVVVPE--EEQAEIS 62 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcc--cCEE-----CCeeHHHHHHHHHHHC--------C---CCeEEEEECH--HHHHHHH
Confidence 4679999999997 478998 9887 6899999998887663 2 1246677776 2345677
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
+++++..+ ..... ...... ....+-|-|+........ + .+.+.|.+.|.
T Consensus 63 ~~l~~~~~-~~~~~-----------------~~~~~~----~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~ 111 (214)
T cd04198 63 TYLRSFPL-NLKQK-----------------LDEVTI----VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDL 111 (214)
T ss_pred HHHHhccc-ccCcc-----------------eeEEEe----cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCcc
Confidence 78875421 00000 000000 112357778777666553 1 24567777774
Q ss_pred CccccchhhHHHhhhhhhcCCceeEEE
Q 007226 196 VVAATDLTLLALAGIGLHHGKKLGFAS 222 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~~~~~~~~~~ 222 (612)
+ ...| +..++-.+...++.+.+..
T Consensus 112 i-~~~~--l~~~l~~h~~~~~~~t~~~ 135 (214)
T cd04198 112 I-TDLP--LIELVDLHRSHDASLTVLL 135 (214)
T ss_pred c-cccC--HHHHHHHHhccCCcEEEEE
Confidence 3 2233 2234555555566655543
No 59
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=96.49 E-value=0.068 Score=54.82 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=103.0
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+.+. | .--++|.++. ..+.+.
T Consensus 2 avilaaG~gtRl~~~t~~~pK~--llpv-----~g~pii~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKP--MVEI-----GGKPILWHIMKIYSHH--------G---INDFIICCGY---KGYVIK 60 (254)
T ss_pred EEEEcCccccccCccccCCCcc--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHHH
Confidence 47889999999964 38898 8887 6899998887776543 3 2246677776 678888
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeee-eecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 194 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~-l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vD 194 (612)
++|.+...++. .-++. ++++...... ...+.. .. ...+-.|-|.|+-...... .++ -+.+.+.+.|
T Consensus 61 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~~~~--~~~~~~~~gt~~al~~~~~--~i~------~e~flv~~gD 127 (254)
T TIGR02623 61 EYFANYFLHMS-DVTFH-MADNTMEVHH-KRVEPWRVT--LVDTGESTQTGGRLKRVRE--YLD------DEAFCFTYGD 127 (254)
T ss_pred HHHHhhhhccc-CeeEE-eccccccccc-ccCCcccee--eeecCCcCCcHHHHHHHHH--hcC------CCeEEEEeCC
Confidence 99876443321 12232 2232222211 111100 00 0011245777654433322 121 2567789999
Q ss_pred CCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCcc
Q 007226 195 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 274 (612)
Q Consensus 195 N~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~ 274 (612)
++ ...|.. .++-.+...+.+..+.. +. ....-|++.. .+|+ +.++.|=|.. .+
T Consensus 128 ~i-~~~dl~--~~~~~h~~~~~d~tl~~-~~---~~~~yG~v~~---d~~~------V~~~~Ekp~~---------~~-- 180 (254)
T TIGR02623 128 GV-ADIDIK--ALIAFHRKHGKKATVTA-VQ---PPGRFGALDL---EGEQ------VTSFQEKPLG---------DG-- 180 (254)
T ss_pred eE-ecCCHH--HHHHHHHHcCCCEEEEE-ec---CCCcccEEEE---CCCe------EEEEEeCCCC---------CC--
Confidence 85 344432 44555666667765543 32 2234577754 2343 3334331210 01
Q ss_pred ccccceeeEEEEeHHHH
Q 007226 275 ADFPANTNILYVDLASA 291 (612)
Q Consensus 275 s~f~~Ninnl~~~L~~l 291 (612)
. ..|+..++|+-+.+
T Consensus 181 -~-~i~~Giyi~~~~il 195 (254)
T TIGR02623 181 -G-WINGGFFVLNPSVL 195 (254)
T ss_pred -C-eEEEEEEEEcHHHH
Confidence 1 15899999997765
No 60
>PRK10122 GalU regulator GalF; Provisional
Probab=96.41 E-value=0.0089 Score=63.12 Aligned_cols=64 Identities=14% Similarity=0.344 Sum_probs=52.2
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCch
Q 007226 35 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 111 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~ 111 (612)
.++.+|+||||.||||. ...||- ++|+ .||++++++++.+... | .-.++|++.. ..
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~--llpi-----~gkpiI~~~l~~l~~~--------G---i~~i~iv~~~---~~ 60 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SK 60 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---Ch
Confidence 36778999999999998 577998 9888 5899999999888664 3 2257888887 78
Q ss_pred HHHHHHHH
Q 007226 112 ERITSLCE 119 (612)
Q Consensus 112 ~~T~~~le 119 (612)
+...++|.
T Consensus 61 ~~i~~~~~ 68 (297)
T PRK10122 61 NAVENHFD 68 (297)
T ss_pred HHHHHHHh
Confidence 88989986
No 61
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.38 E-value=0.008 Score=61.39 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=54.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
+..|+||.|.|+|||.+.||. ++.+ .|+++++.++++|... | ..-++|.|+.. ..+...+
T Consensus 4 ~kavILAAG~GsRlg~~~PK~--Lvev-----~gr~ii~~~i~~L~~~--------g---i~e~vvV~~g~--~~~lve~ 63 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKA--LVEV-----GGREIIYRTIENLAKA--------G---ITEFVVVTNGY--RADLVEE 63 (239)
T ss_pred eeEEEEecccccccCCCCCch--hhhc-----CCeEeHHHHHHHHHHc--------C---CceEEEEeccc--hHHHHHH
Confidence 356889999999999999999 8877 6999999988887654 2 34689999663 8888889
Q ss_pred HHHHccc
Q 007226 117 LCERLRW 123 (612)
Q Consensus 117 ~le~~~~ 123 (612)
|+.++++
T Consensus 64 ~l~~~~~ 70 (239)
T COG1213 64 FLKKYPF 70 (239)
T ss_pred HHhcCCc
Confidence 9988773
No 62
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=96.38 E-value=0.0072 Score=60.11 Aligned_cols=97 Identities=24% Similarity=0.308 Sum_probs=66.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.+..|+||||++.|| .+|. ++++ .|++++|+.++++... +. .++|.... +.+.
T Consensus 4 ~~~~vILAGG~srRm---~dK~--l~~~-----~g~~lie~v~~~L~~~-----------~~-~vvi~~~~---~~~~-- 56 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKA--LLPL-----NGRPLIEHVIDRLRPQ-----------VD-VVVISANR---NQGR-- 56 (192)
T ss_pred CceEEEecCCccccc---cccc--ccee-----CCeEHHHHHHHHhccc-----------CC-EEEEeCCC---chhh--
Confidence 577899999999999 8898 8887 7999999999988664 24 56665554 3221
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCC---chHhHHHHhcCchhHHHHCCcEEEEEEe
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGH---GAIWKLAHDKGIFKWFHDNGRKGATVRQ 192 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~Gh---GdI~~aL~~sGlLd~l~~~Gikyv~v~~ 192 (612)
+..| .+|.+.|.. +|+ .+||++|. ..+-+|++|..
T Consensus 57 -----~~~~-------------g~~vv~D~~---------------~~~GPL~Gi~~al~---------~~~~~~~~v~~ 94 (192)
T COG0746 57 -----YAEF-------------GLPVVPDEL---------------PGFGPLAGILAALR---------HFGTEWVLVLP 94 (192)
T ss_pred -----hhcc-------------CCceeecCC---------------CCCCCHHHHHHHHH---------hCCCCeEEEEe
Confidence 1122 244554221 222 35666664 44579999999
Q ss_pred cCCCccccc
Q 007226 193 VSNVVAATD 201 (612)
Q Consensus 193 vDN~la~~D 201 (612)
+|.+....|
T Consensus 95 ~D~P~i~~~ 103 (192)
T COG0746 95 CDMPFIPPE 103 (192)
T ss_pred cCCCCCCHH
Confidence 999999873
No 63
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.37 E-value=0.0047 Score=57.93 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=39.3
Q ss_pred EEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCC
Q 007226 39 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 106 (612)
Q Consensus 39 vvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~ 106 (612)
+|+||||.|+|||- ||. ++|+ .|+|+++.+++++.... .-+++|.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~--l~~i-----~g~~li~~~l~~l~~~~-----------~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKA--LLPI-----GGKPLIERVLEALREAG-----------VDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTS--CGG--GSEE-----TTEEHHHHHHHHHHHHT-----------ESEEEEEEST
T ss_pred CEEECCcCcccCCC--Ccc--ceeE-----CCccHHHHHHHHhhccC-----------CceEEEecCh
Confidence 47899999999994 888 8887 79999999999997763 1267777765
No 64
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.31 E-value=0.32 Score=48.78 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=65.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+++.|+||+|.++||+ .|- ++|+ .|++++++.++++++.. + .-.++|-|. ++.+.
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~--l~~i-----~GkPli~~~i~~l~~~~-------~---~~~ivv~t~-----~~~i~ 56 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKP--LLDI-----LGKPMIQHVYERAAQAA-------G---VEEVYVATD-----DQRIE 56 (238)
T ss_pred cEEEEEecCCCCCCCC---CCc--cCcc-----CCcCHHHHHHHHHHhcC-------C---CCeEEEECC-----hHHHH
Confidence 4678999999999996 487 8877 79999999999877641 1 113444332 36788
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
+++++ +|. .+ +.+ .+ ..+.|.+.+..++.. + +.+++.+.+.|+
T Consensus 57 ~~~~~---~~~---~v--~~~--------~~------------~~~~g~~~~~~a~~~------~---~~d~~lv~~~D~ 99 (238)
T PRK13368 57 DAVEA---FGG---KV--VMT--------SD------------DHLSGTDRLAEVMLK------I---EADIYINVQGDE 99 (238)
T ss_pred HHHHH---cCC---eE--Eec--------Cc------------cCCCccHHHHHHHHh------C---CCCEEEEEcCCc
Confidence 88874 232 11 111 00 113455555444322 2 457899999999
Q ss_pred Ccccc
Q 007226 196 VVAAT 200 (612)
Q Consensus 196 ~la~~ 200 (612)
++...
T Consensus 100 P~i~~ 104 (238)
T PRK13368 100 PMIRP 104 (238)
T ss_pred CcCCH
Confidence 98764
No 65
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.26 E-value=0.0044 Score=61.22 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=34.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCC-CcchHHHHHHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCG-RTLLEGLIRDLQA 83 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~g-ks~Lql~~e~I~~ 83 (612)
+++.|+||||+++||| .+|. ++|+ .| +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~--ll~~-----~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKA--LLPF-----GSYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCce--EEEe-----CCCCcHHHHHHHHHHH
Confidence 7889999999999998 4787 8887 56 9999999998864
No 66
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.16 E-value=0.0078 Score=57.79 Aligned_cols=48 Identities=23% Similarity=0.363 Sum_probs=38.4
Q ss_pred EEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCC
Q 007226 39 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 106 (612)
Q Consensus 39 vvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~ 106 (612)
+|+||||.|+||| .||. ++|+ .|+++++..++++++.. .-+++|.|+.
T Consensus 2 ~iIla~G~s~R~g--~~K~--ll~~-----~g~pll~~~i~~l~~~~-----------~~~iivv~~~ 49 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKL--LLPY-----KGKTILEHVVDNALRLF-----------FDEVILVLGH 49 (188)
T ss_pred eEEECCCCcccCC--CCce--eccc-----CCeeHHHHHHHHHHHcC-----------CCcEEEEeCC
Confidence 5899999999998 5788 8877 69999999998886532 1257777777
No 67
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=95.98 E-value=0.12 Score=50.83 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=33.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 84 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~l 84 (612)
+++.|+||||.|+||+ .|. ++++ .|++++++.++++++.
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~--l~~l-----~Gkpll~~~l~~l~~~ 39 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKN--IRPL-----GGKPLIAWTIEAALES 39 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccc--cchh-----CCccHHHHHHHHHHhC
Confidence 4678999999999996 477 7766 7999999999998764
No 68
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.95 E-value=0.011 Score=64.09 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=34.3
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHH
Q 007226 35 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 83 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~ 83 (612)
.+++.|+||||+|+|||. +|. ++++ .|+|+++..++.+..
T Consensus 173 ~~i~~iILAGG~SsRmG~--~K~--ll~~-----~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMGS--DKA--LLSY-----HESNQLVHTAALLRP 212 (369)
T ss_pred CCceEEEEcCCccccCCC--CcE--EEEE-----CCccHHHHHHHHHHh
Confidence 467899999999999994 788 8887 799999999888854
No 69
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.90 E-value=0.0069 Score=58.35 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.4
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 82 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~ 82 (612)
++.|+||||.|||||- .||. ++++ .|+|+++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~--l~~i-----~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKG--LVEL-----GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCc--eeEE-----CCEEHHHHHHHHHH
Confidence 3679999999999983 3898 8887 79999999999875
No 70
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.90 E-value=0.0063 Score=58.35 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=38.5
Q ss_pred EEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCC
Q 007226 38 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 106 (612)
Q Consensus 38 avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~ 106 (612)
+.|+||||.|+|||. +|. ++++ .|+++++..++++.+. . -+++|-|+.
T Consensus 2 ~~iILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~~-------~-----~~iivv~~~ 49 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKA--LLEL-----GGKPLLEHVLERLKPL-------V-----DEVVISANR 49 (181)
T ss_pred cEEEECCCccccCCC--Cce--eeEE-----CCEEHHHHHHHHHHhh-------c-----CEEEEECCC
Confidence 568999999999996 888 8887 6899999999887653 1 156777776
No 71
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=95.80 E-value=0.014 Score=59.32 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=48.3
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+.+. | --.++|.|+. ..+...
T Consensus 3 avIlAaG~gtRl~plt~~~pK~--llpi-----~g~pli~~~l~~l~~~--------g---i~~v~iv~~~---~~~~i~ 61 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPLIQYVVEEAVEA--------G---IEDILIVTGR---GKRAIE 61 (260)
T ss_pred EEEEcccCcccCCCcccCCCce--eEEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---cHHHHH
Confidence 58999999999974 67888 8887 5889999998877653 3 1257888987 677888
Q ss_pred HHHHH
Q 007226 116 SLCER 120 (612)
Q Consensus 116 ~~le~ 120 (612)
++|.+
T Consensus 62 ~~~~~ 66 (260)
T TIGR01099 62 DHFDT 66 (260)
T ss_pred HHhcc
Confidence 88863
No 72
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=95.74 E-value=0.13 Score=57.80 Aligned_cols=194 Identities=13% Similarity=0.147 Sum_probs=100.6
Q ss_pred EEEecCCccccCC----CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCch-HH
Q 007226 39 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH-ER 113 (612)
Q Consensus 39 vvlLaGGlGTRLG----~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~-~~ 113 (612)
.|+||||.||||+ ...||- ++|+. .++|++|..++++..+. +. ..+|.|+. .+ ..
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--~l~l~----g~~~ll~~tl~~l~~~~----------~~-~iviv~~~---~~~~~ 62 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQ--FLALV----GDLTMLQQTLKRLAGLP----------CS-SPLVICNE---EHRFI 62 (468)
T ss_pred EEEecCcccccCCccccCCCCCc--eeEcC----CCCcHHHHHHHHHhcCC----------Cc-CcEEecCH---HHHHH
Confidence 5899999999998 346998 99985 56999999999876542 11 34567775 33 34
Q ss_pred HHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCch--HhHHHHhcCchhHHHH--CCcEEEE
Q 007226 114 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA--IWKLAHDKGIFKWFHD--NGRKGAT 189 (612)
Q Consensus 114 T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGd--I~~aL~~sGlLd~l~~--~Gikyv~ 189 (612)
..+.+++ +|++..+ +..| |. |-|-|. .+.++ .+.+ .+=..+.
T Consensus 63 ~~~~l~~---~~~~~~~--~i~E---p~-------------------~~gTa~ai~~aa~-------~~~~~~~~~~~vl 108 (468)
T TIGR01479 63 VAEQLRE---IGKLASN--IILE---PV-------------------GRNTAPAIALAAL-------LAARRNGEDPLLL 108 (468)
T ss_pred HHHHHHH---cCCCcce--EEec---cc-------------------ccCchHHHHHHHH-------HHHHHHCCCcEEE
Confidence 4555553 2322111 1122 11 112221 12221 1212 2335789
Q ss_pred EEecCCCccccchhhHHHhhhh---hhcCCceeEEEEeecCCCcccceEEEEEecCC--CceecceEEEEecccCccCcC
Q 007226 190 VRQVSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLD--GKWAYGLSCIEYTEFDKFGIT 264 (612)
Q Consensus 190 v~~vDN~la~~Dp~i~~~~G~~---~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~d--G~~~~~~~vVEYsel~~~~~~ 264 (612)
|.+.|+++... ..|-.++-.+ .+.+..+.+. .+...+..+-|.+......+ +. ..|...-|=|+...+
T Consensus 109 Vl~~D~~i~~~-~~f~~~l~~~~~~a~~~~lvtlg--i~p~~p~t~YGyI~~~~~~~~~~~----~~V~~f~EKP~~~~a 181 (468)
T TIGR01479 109 VLAADHVITDE-DAFQAAVKLAMPAAAEGKLVTFG--IVPTHPETGYGYIRRGEPLAGEDV----YQVQRFVEKPDLATA 181 (468)
T ss_pred EecCceeecCH-HHHHHHHHHHHHHHhcCCEEEEE--ecCCCCCCCceEEEeCCccCCCCc----eEEeEEEECCChHHH
Confidence 99999887531 1232233322 2223322232 33344556788885410001 11 123333333332111
Q ss_pred CCCCCCCCccccccceeeEEEEeHHHHHhhhcc
Q 007226 265 RGPFSSNGLQADFPANTNILYVDLASAELVGSS 297 (612)
Q Consensus 265 ~~~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~~ 297 (612)
..-..+| .|-.|+.++.|+.+.+.+.+.+
T Consensus 182 ~~~l~~g----~~~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 182 QAYLESG----DYYWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred HHHHhcC----CeEEEeeEEEEEHHHHHHHHHH
Confidence 0001112 2445999999999999999876
No 73
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=95.68 E-value=0.0086 Score=59.31 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=34.3
Q ss_pred EEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHH
Q 007226 39 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 84 (612)
Q Consensus 39 vvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~l 84 (612)
.|+||||.|+|||.+.||. ++++ .|++++++.++++...
T Consensus 2 aiIlAaG~s~R~~~~~~K~--l~~l-----~gkpll~~~l~~l~~~ 40 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQ--YLEL-----GGRPLLEHTLDAFLAH 40 (217)
T ss_pred EEEEcCcccccCCCCCCcc--EeEE-----CCeEHHHHHHHHHhcC
Confidence 5899999999999878998 8887 6999999999988653
No 74
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.62 E-value=0.011 Score=58.60 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=34.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 83 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~ 83 (612)
+++.|+||||.|+|||. +|. ++++ .|+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKA--LLPW-----QGVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--Cce--eeEE-----CCEeHHHHHHHHHHh
Confidence 67889999999999995 688 8887 689999999988854
No 75
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.59 E-value=0.0098 Score=58.68 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=35.5
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHH
Q 007226 37 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 84 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~l 84 (612)
++.|+||||.|+|||...||. ++|+ .|++++++.++++...
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~--l~~i-----~Gkpll~~~i~~l~~~ 41 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQ--FLEL-----GGKPVLEHTLEAFLAH 41 (218)
T ss_pred CEEEEECCcccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHhcC
Confidence 357899999999999777898 8887 7999999999988654
No 76
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.58 E-value=0.011 Score=59.13 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=37.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 84 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~l 84 (612)
++..|+||||.|+|||...||- ++++ .|++++++.++++++.
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~--l~~~-----~g~pli~~~l~~l~~~ 44 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQ--YLPL-----GGKPILEHTLEAFLAH 44 (227)
T ss_pred ceEEEEEcCccccccCCCCCce--eeEE-----CCEEHHHHHHHHHHcC
Confidence 5778999999999999888998 8887 7999999999988753
No 77
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.55 E-value=0.013 Score=57.19 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=33.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 82 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~ 82 (612)
++..|+||||.|+||| ..+|. ++|+ .|+|+++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~--ll~~-----~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKG--LQEL-----NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCc--eeEE-----CCEEHHHHHHHHHh
Confidence 6789999999999996 25788 8887 79999999998876
No 78
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.54 E-value=0.012 Score=57.27 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.3
Q ss_pred EEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHH
Q 007226 38 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 83 (612)
Q Consensus 38 avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~ 83 (612)
+.|+||||.|+|||. +|. ++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKL--ALPL-----GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cce--ecee-----CCccHHHHHHHHHHh
Confidence 468999999999995 687 8776 799999999987654
No 79
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.036 Score=60.10 Aligned_cols=179 Identities=20% Similarity=0.198 Sum_probs=105.9
Q ss_pred EEEEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHH
Q 007226 37 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 113 (612)
Q Consensus 37 ~avvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~ 113 (612)
+-.|+||||.||||- .+.||- ++|+ -||++++++++.+.+. | ---++|.+.. ..+.
T Consensus 2 mkavILagG~GtRLrPlT~~~PKP--llpI-----~gkPii~~~l~~L~~~--------G---v~eivi~~~y---~~~~ 60 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKP--LLPI-----AGKPLIEYVLEALAAA--------G---VEEIVLVVGY---LGEQ 60 (358)
T ss_pred ceEEEEeCCccccccccccCCCcc--ccee-----CCccHHHHHHHHHHHC--------C---CcEEEEEecc---chHH
Confidence 346889999999997 368888 8887 6999999999888653 3 2246667776 8899
Q ss_pred HHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCC-chHhHHHHhcCchhHHHHCCcEEEEEEe
Q 007226 114 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGH-GAIWKLAHDKGIFKWFHDNGRKGATVRQ 192 (612)
Q Consensus 114 T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~Gh-GdI~~aL~~sGlLd~l~~~Gikyv~v~~ 192 (612)
+.++|.+...+|+ +|.+..|.. |-|- |.+..++.. + +-+-+++.+
T Consensus 61 i~~~~~d~~~~~~---~I~y~~e~~----------------------~lGTag~l~~a~~~------l---~~~~f~v~~ 106 (358)
T COG1208 61 IEEYFGDGEGLGV---RITYVVEKE----------------------PLGTAGALKNALDL------L---GGDDFLVLN 106 (358)
T ss_pred HHHHHhcccccCC---ceEEEecCC----------------------cCccHHHHHHHHHh------c---CCCcEEEEE
Confidence 9999998755554 333222222 3444 344443322 2 116678888
Q ss_pred cCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCC
Q 007226 193 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 272 (612)
Q Consensus 193 vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~ 272 (612)
-|++--. | +-.++.++..+.+...+.. ++...+ ..-|++.. .++. -.++++.+-|... . . .
T Consensus 107 GDv~~~~-d--l~~l~~~~~~~~~~~~~~~-~~~~~~-~~~Gvv~~---~~~~----~~v~~f~ekp~~~-~----~-~- 167 (358)
T COG1208 107 GDVLTDL-D--LSELLEFHKKKGALATIAL-TRVLDP-SEFGVVET---DDGD----GRVVEFREKPGPE-E----P-P- 167 (358)
T ss_pred CCeeecc-C--HHHHHHHHHhccCccEEEE-EecCCC-CcCceEEe---cCCC----ceEEEEEecCCCC-C----C-C-
Confidence 8886553 2 2234566666644444443 554444 34555543 2121 2466776666321 0 0 0
Q ss_pred ccccccceeeEEEEeHHHHH
Q 007226 273 LQADFPANTNILYVDLASAE 292 (612)
Q Consensus 273 ~~s~f~~Ninnl~~~L~~l~ 292 (612)
..-.|+...+|+-+.++
T Consensus 168 ---~~~in~Giyi~~~~v~~ 184 (358)
T COG1208 168 ---SNLINAGIYIFDPEVFD 184 (358)
T ss_pred ---CceEEeEEEEECHHHhh
Confidence 12247777777766655
No 80
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=95.29 E-value=0.36 Score=50.58 Aligned_cols=159 Identities=19% Similarity=0.165 Sum_probs=97.3
Q ss_pred EEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHH
Q 007226 40 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 116 (612)
Q Consensus 40 vlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~ 116 (612)
|+||||.||||- +..||- ++|| -+|..+++-++++... | .--++|.++. .+-...++
T Consensus 4 iILAgG~GTRL~PlT~~~~Kq--LlpV-----~~KPmi~y~l~~L~~a--------G---I~dI~II~~~--~~~~~~~~ 63 (286)
T COG1209 4 VILAGGSGTRLRPLTRVVPKQ--LLPV-----YDKPMIYYPLETLMLA--------G---IRDILIVVGP--EDKPTFKE 63 (286)
T ss_pred EEecCcCccccccccccCCcc--ccee-----cCcchhHhHHHHHHHc--------C---CceEEEEecC--Cchhhhhh
Confidence 789999999986 578888 8887 6899999999988665 3 1245666776 36666666
Q ss_pred HHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCCC
Q 007226 117 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 196 (612)
Q Consensus 117 ~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN~ 196 (612)
++.+-..||+ ++++-.| -.|.|=++-+. +-+++. |-+-..++--||+
T Consensus 64 llGdgs~~gv---~itY~~Q----------------------~~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi 110 (286)
T COG1209 64 LLGDGSDFGV---DITYAVQ----------------------PEPDGLAHAVL------IAEDFV--GDDDFVLYLGDNI 110 (286)
T ss_pred hhcCccccCc---ceEEEec----------------------CCCCcHHHHHH------HHHhhc--CCCceEEEecCce
Confidence 7766678887 4444334 34566555443 234443 4466789999999
Q ss_pred ccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCcc
Q 007226 197 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 261 (612)
Q Consensus 197 la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~ 261 (612)
+-. |.. .++--+.+.+.+..+.. ++....+.-||+.. ..||+ .+.++|=-+.|+.
T Consensus 111 ~~~-~l~--~~~~~~~~~~~ga~i~~--~~V~dP~rfGV~e~--d~~~~---v~~l~EKP~~P~S 165 (286)
T COG1209 111 FQD-GLS--ELLEHFAEEGSGATILL--YEVDDPSRYGVVEF--DEDGK---VIGLEEKPKEPKS 165 (286)
T ss_pred ecc-ChH--HHHHHHhccCCCcEEEE--EEcCCcccceEEEE--cCCCc---EEEeEECCCCCCC
Confidence 887 321 12333333333333332 33334456777754 24566 3556665555543
No 81
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.20 E-value=0.02 Score=62.21 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=35.7
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHH
Q 007226 34 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 83 (612)
Q Consensus 34 l~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~ 83 (612)
+.+++.|+||||+|+||| ..||. ++++ .|+|+++..++.+..
T Consensus 3 ~~~i~~VILAgG~s~Rmg-g~~K~--ll~i-----~Gkpll~~~i~~l~~ 44 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN-GRDKA--LILL-----GGKPLIERVVDRLRP 44 (366)
T ss_pred CCCceEEEEcCCcccCCC-CCCCc--eeEE-----CCeeHHHHHHHHHHh
Confidence 347889999999999996 37888 8887 699999999998853
No 82
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=95.18 E-value=0.03 Score=57.32 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=47.9
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
+|+||||.||||.- ..||. ++|+ .|++++++.++.+.+. | .-.++|.|.. ..+.+.
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~--llpv-----~gkpli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 61 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPVIQYIVEEAVAA--------G---IEDIIIVTGR---GKRAIE 61 (267)
T ss_pred EEEEcCCCCccCCCcccCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---chHHHH
Confidence 58999999999973 67888 8887 6899999999887653 3 1257788887 677788
Q ss_pred HHHHH
Q 007226 116 SLCER 120 (612)
Q Consensus 116 ~~le~ 120 (612)
++|.+
T Consensus 62 ~~~~~ 66 (267)
T cd02541 62 DHFDR 66 (267)
T ss_pred HHhCC
Confidence 88864
No 83
>PLN02917 CMP-KDO synthetase
Probab=95.08 E-value=0.53 Score=49.77 Aligned_cols=186 Identities=10% Similarity=0.103 Sum_probs=100.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
++..|++|+|.++||+ +|- ++|+ .|++++++.+++++... .+..++... .++.+.
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~--L~~i-----~GkPLL~~vi~~a~~~~-----------~~~~VVV~~----~~e~I~ 101 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKP--LVHI-----LGKPMIQRTWERAKLAT-----------TLDHIVVAT----DDERIA 101 (293)
T ss_pred cEEEEEecCCCCCCCC---CCC--eeeE-----CCEEHHHHHHHHHHcCC-----------CCCEEEEEC----ChHHHH
Confidence 7889999999999997 487 8887 79999999999886542 122233332 346777
Q ss_pred HHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCC
Q 007226 116 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 195 (612)
Q Consensus 116 ~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN 195 (612)
+++.++ |. .+..| .+ ..+.|-|.+..++. .+ +...+++.+.+.|.
T Consensus 102 ~~~~~~---~v-----~vi~~--------~~------------~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~ 146 (293)
T PLN02917 102 ECCRGF---GA-----DVIMT--------SE------------SCRNGTERCNEALK------KL-EKKYDIVVNIQGDE 146 (293)
T ss_pred HHHHHc---CC-----EEEeC--------Cc------------ccCCchHHHHHHHH------hc-cCCCCEEEEecCCc
Confidence 777642 21 11111 10 12455566655442 22 22357999999999
Q ss_pred CccccchhhHHHhhhhhhcCCceeEEEE-ee-cCCCcccceEEE-EEecCCCceecceEEEEec-c-cCccCcCCCCCCC
Q 007226 196 VVAATDLTLLALAGIGLHHGKKLGFASC-KR-SSGATEGINVLI-EKKNLDGKWAYGLSCIEYT-E-FDKFGITRGPFSS 270 (612)
Q Consensus 196 ~la~~Dp~i~~~~G~~~~~~~~~~~~~v-~r-K~~~~e~vGvl~-~~~~~dG~~~~~~~vVEYs-e-l~~~~~~~~~~~d 270 (612)
++...+ .+-.++-.. ..+.++.+.+. .. +.....+-|.+. .+ ..+|+ .+..+ . +|.+- +.+. +
T Consensus 147 PlI~~~-tI~~li~~~-~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~-~~~g~------alyfsr~~Ipe~k--d~~~-~ 214 (293)
T PLN02917 147 PLIEPE-IIDGVVKAL-QAAPDAVFSTAVTSLKPEDASDPNRVKCVV-DNQGY------AIYFSRGLIPYNK--SGKV-N 214 (293)
T ss_pred CCCCHH-HHHHHHHHH-HhcCCceEEEEeeecCHHHhcCCCceEEEE-CCCCe------EEEeecCcCCcCC--Cccc-c
Confidence 999863 222233332 23344444331 11 222223444442 21 24564 22333 2 22111 0001 1
Q ss_pred CCccccccceeeEEEEeHHHHHhhhc
Q 007226 271 NGLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 271 g~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
. ...+-.|+....|+.++|. .+.
T Consensus 215 ~--~~i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 215 P--QFPYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred c--ccceEEEEEEEEeCHHHHH-HHH
Confidence 1 1223349999999999999 543
No 84
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=95.05 E-value=0.044 Score=54.63 Aligned_cols=61 Identities=30% Similarity=0.402 Sum_probs=45.9
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .-.++|.|+. ..+...
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~--l~~~-----~g~~li~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~ 59 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKC--LLEI-----NGKPLLERQIETLKEA--------G---IDDIVIVTGY---KKEQIE 59 (229)
T ss_pred CEEEeccCccccchhhCCCCce--eeeE-----CCEEHHHHHHHHHHHC--------C---CceEEEEecc---CHHHHH
Confidence 37899999999975 46888 8887 6889999998877653 2 1256778886 567777
Q ss_pred HHHHH
Q 007226 116 SLCER 120 (612)
Q Consensus 116 ~~le~ 120 (612)
+++.+
T Consensus 60 ~~~~~ 64 (229)
T cd02523 60 ELLKK 64 (229)
T ss_pred HHHhc
Confidence 77764
No 85
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=94.86 E-value=0.024 Score=61.41 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=33.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 83 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~ 83 (612)
.+..|+||||+|+||| .+|. ++|. .|+|+++.+++++..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKa--LL~~-----~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKA--LLNY-----QGQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcc--ccee-----CCccHHHHHHHHHHh
Confidence 5678999999999999 5888 8876 799999998877654
No 86
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=94.51 E-value=0.032 Score=61.08 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=37.6
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHH
Q 007226 35 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 84 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~l 84 (612)
.+++.|+||||.|+|||...||- .+++ .|++++++.++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKq--ll~l-----~GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQ--WLRI-----GGKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCee--EEEE-----CCeeHHHHHHHHHhcC
Confidence 46789999999999999888998 8887 6999999998887654
No 87
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=94.49 E-value=0.064 Score=54.93 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=48.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
++..|+||+|.|||||.+.||- -+++ .|+++|++.++.++.... --.++|.++. +-+....
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq--~l~l-----~g~pll~~tl~~f~~~~~----------i~~Ivvv~~~--~~~~~~~ 64 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQ--YLEL-----GGRPLLEHTLEAFLESPA----------IDEIVVVVSP--EDDPYFE 64 (230)
T ss_pred eEEEEEEcCccccccCCCCCce--EEEE-----CCEEehHHHHHHHHhCcC----------CCeEEEEECh--hhhHHHH
Confidence 6788999999999999999998 7776 799999999988877641 1256777776 3444444
Q ss_pred HHHH
Q 007226 116 SLCE 119 (612)
Q Consensus 116 ~~le 119 (612)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 4443
No 88
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=94.08 E-value=0.094 Score=52.37 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=47.5
Q ss_pred EEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||||.|+||+- ..||. ++|+ .|++++++.++.+.+. | .--++|+++. ..+...
T Consensus 3 avIlagg~g~rl~plt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~ 61 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKA--LLPV-----ANVPLIDYTLEWLEKA--------G---VEEVFVVCCE---HSQAII 61 (216)
T ss_pred EEEEeCCCccccCccccCCCcc--cceE-----CCEEHHHHHHHHHHHC--------C---CCeEEEEeCC---cHHHHH
Confidence 46799999999973 78998 8887 6889999988877652 2 1247888887 667777
Q ss_pred HHHHHcc
Q 007226 116 SLCERLR 122 (612)
Q Consensus 116 ~~le~~~ 122 (612)
+++.+..
T Consensus 62 ~~~~~~~ 68 (216)
T cd02507 62 EHLLKSK 68 (216)
T ss_pred HHHHhcc
Confidence 7777643
No 89
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=93.97 E-value=0.086 Score=55.86 Aligned_cols=63 Identities=21% Similarity=0.350 Sum_probs=49.3
Q ss_pred EEEEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHH
Q 007226 37 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 113 (612)
Q Consensus 37 ~avvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~ 113 (612)
+-.|++|||.||||.- ..||- ++|+ .|++++++.++.+.+. | .-.++|.++. ..+.
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~--l~pv-----~g~pii~~~l~~l~~~--------g---i~~i~vv~~~---~~~~ 67 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKE--MLPL-----VDKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKNS 67 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHHH
Confidence 3468889999999964 68898 8887 6889999999887664 2 2246788887 6788
Q ss_pred HHHHHHH
Q 007226 114 ITSLCER 120 (612)
Q Consensus 114 T~~~le~ 120 (612)
+.++|..
T Consensus 68 i~~~~~~ 74 (302)
T PRK13389 68 IENHFDT 74 (302)
T ss_pred HHHHHcc
Confidence 9999964
No 90
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.94 E-value=0.037 Score=55.14 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=31.7
Q ss_pred EEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHH
Q 007226 39 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 83 (612)
Q Consensus 39 vvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~ 83 (612)
+|+||||.||||+ ...||. ++|+ .|++++++.++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~--ll~i-----~g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKP--LIEV-----DGKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCce--eeEE-----CCEEHHHHHHHhhhc
Confidence 4899999999995 367898 8887 689999998887755
No 91
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=93.18 E-value=0.26 Score=50.22 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=30.0
Q ss_pred EEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHH
Q 007226 39 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 83 (612)
Q Consensus 39 vvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~ 83 (612)
+|++|+|.||||+ +|- ++++ .|++++++.++++++
T Consensus 2 ~iIpA~g~s~R~~---~K~--L~~l-----~GkPli~~~le~~~~ 36 (238)
T TIGR00466 2 VIIPARLASSRLP---GKP--LEDI-----FGKPMIVHVAENANE 36 (238)
T ss_pred EEEecCCCCCCCC---CCe--eccc-----CCcCHHHHHHHHHHh
Confidence 5889999999995 687 8776 799999999998764
No 92
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=92.88 E-value=4 Score=44.04 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=115.3
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCch
Q 007226 35 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 111 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~ 111 (612)
..++.|+|-||.||||- ++.||- +.|+ ..+.+++++++.+.+. | .--+++.|++ +.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKP--lVpf-----gn~pmI~hqieal~ns--------G---i~~I~la~~y---~s 66 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKP--LVPF-----GNKPMILHQIEALINS--------G---ITKIVLATQY---NS 66 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCc--cccc-----CcchhhHHHHHHHHhC--------C---CcEEEEEEec---Cc
Confidence 47888999999999975 577777 7665 4677888877766543 3 4478999999 55
Q ss_pred H-HHHHHHHHcc-cCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEE
Q 007226 112 E-RITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGAT 189 (612)
Q Consensus 112 ~-~T~~~le~~~-~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~ 189 (612)
+ -.+.+.+.+. .|| -.| +|.|...|.=+ -+-..|..+ .|....++ -.+
T Consensus 67 ~sl~~~~~k~y~~~lg---Vei-~~s~eteplgt---------------------aGpl~laR~--~L~~~~~~---~ff 116 (371)
T KOG1322|consen 67 ESLNRHLSKAYGKELG---VEI-LASTETEPLGT---------------------AGPLALARD--FLWVFEDA---PFF 116 (371)
T ss_pred HHHHHHHHHHhhhccc---eEE-EEEeccCCCcc---------------------cchHHHHHH--HhhhcCCC---cEE
Confidence 5 5666666663 455 234 46665554433 222222221 12222211 456
Q ss_pred EEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecC-CCceecceEEEEecccCccCcCCCCC
Q 007226 190 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPF 268 (612)
Q Consensus 190 v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~-dG~~~~~~~vVEYsel~~~~~~~~~~ 268 (612)
|-+.| .+++. -+..|+.++..++++....+ . +..+.-+-|++... . .| .+..++|=|++...
T Consensus 117 VLnsD-vi~~~--p~~~~vqfH~~~gae~TI~~-t-~vdepSkyGvv~~d--~~~g------rV~~F~EKPkd~vs---- 179 (371)
T KOG1322|consen 117 VLNSD-VICRM--PYKEMVQFHRAHGAEITIVV-T-KVDEPSKYGVVVID--EDTG------RVIRFVEKPKDLVS---- 179 (371)
T ss_pred EecCC-eeecC--CHHHHHHHHHhcCCceEEEE-E-eccCccccceEEEe--cCCC------ceeEehhCchhhhh----
Confidence 66666 44555 34467999999999988775 3 23345567777542 3 44 47788887774321
Q ss_pred CCCCccccccceeeEEEEeHHHHHhhhc
Q 007226 269 SSNGLQADFPANTNILYVDLASAELVGS 296 (612)
Q Consensus 269 ~dg~~~s~f~~Ninnl~~~L~~l~~~l~ 296 (612)
-.-|.....|+-+.|.+++.
T Consensus 180 --------nkinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 180 --------NKINAGIYILNPEVLDRILL 199 (371)
T ss_pred --------ccccceEEEECHHHHhHhhh
Confidence 11266777888888888764
No 93
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=92.19 E-value=2.6 Score=46.46 Aligned_cols=200 Identities=15% Similarity=0.173 Sum_probs=120.7
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCch
Q 007226 35 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 111 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~ 111 (612)
+++-.++||||.|+||+- ..+|- .+|.+ ...-+.|+.+-.... .| ---+.+.|-. ..|
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~Rakp--AVpFg----GkYRiIDF~LSN~vN--------SG---i~~I~VltQy--~~~ 64 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKP--AVPFG----GKYRIIDFALSNCVN--------SG---IRRIGVLTQY--KSH 64 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccc--ccccC----ceeEEEeEEcccccc--------cC---CCeEEEEecc--chh
Confidence 467788999999999984 45555 55553 222344443332221 22 2256777877 466
Q ss_pred HHHHHHHHHcccCCCC--CCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEE
Q 007226 112 ERITSLCERLRWFGRG--QSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGAT 189 (612)
Q Consensus 112 ~~T~~~le~~~~FGl~--~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~ 189 (612)
.-.+++.+-..|+++ .+.|+++.+..- .++ -.|.-.+-=.+|.- +..+.+.+-+|+.
T Consensus 65 -SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~-----~~~---------~~wy~Gtadai~Qn------l~~i~~~~~eyvl 123 (393)
T COG0448 65 -SLNDHIGRGWPWDLDRKNGGVFILPAQQR-----EGG---------ERWYEGTADAIYQN------LLIIRRSDPEYVL 123 (393)
T ss_pred -HHHHHhhCCCccccccccCcEEEeCchhc-----cCC---------CcceeccHHHHHHh------HHHHHhcCCCEEE
Confidence 666777766556554 344544432211 111 11222222223322 4555688999999
Q ss_pred EEecCCCccccchhhHHHhhhhhhcCCceeEEE--EeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCC
Q 007226 190 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS--CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 267 (612)
Q Consensus 190 v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~--v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~ 267 (612)
+.+.|=+ .++|..- ++-.+...++++.+.+ ++++ ++..-|++-. ..+|+ ++|+.|=|....+
T Consensus 124 IlsgDhI-YkmDy~~--ml~~H~~~gadiTv~~~~Vp~~--eas~fGim~~--D~~~~------i~~F~eKp~~~~~--- 187 (393)
T COG0448 124 ILSGDHI-YKMDYSD--MLDFHIESGADVTVAVKEVPRE--EASRFGVMNV--DENGR------IIEFVEKPADGPP--- 187 (393)
T ss_pred EecCCEE-EecCHHH--HHHHHHHcCCCEEEEEEECChH--hhhhcCceEE--CCCCC------EEeeeeccCcCCc---
Confidence 9999864 4567664 3788999999998886 3443 2234777754 35666 7787777766211
Q ss_pred CCCCCccccccceeeEEEEeHHHHHhhhcc
Q 007226 268 FSSNGLQADFPANTNILYVDLASAELVGSS 297 (612)
Q Consensus 268 ~~dg~~~s~f~~Ninnl~~~L~~l~~~l~~ 297 (612)
+.+ -+...+.+|+-+.|.++|++
T Consensus 188 --~~~-----laSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 188 --SNS-----LASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred --ccc-----eeeeeeEEEcHHHHHHHHHH
Confidence 111 14789999999999999975
No 94
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=91.68 E-value=0.3 Score=55.16 Aligned_cols=203 Identities=16% Similarity=0.154 Sum_probs=102.8
Q ss_pred EEEEEecCCccccCC-C---CCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchH
Q 007226 37 LGEIYPLGGSADRLG-L---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 112 (612)
Q Consensus 37 ~avvlLaGGlGTRLG-~---~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~ 112 (612)
+-.|+||||.||||= + ..||- ++|+. .++|+||..++++..+. +.-++ |.|+. .-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq--~l~l~----~~~sllq~t~~r~~~~~----------~~~~i-ivt~~--~~~~ 66 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQ--FLCLK----GDLTMLQTTICRLNGVE----------CESPV-VICNE--QHRF 66 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcc--eeECC----CCCCHHHHHHHHHHhCC----------CCCcE-EEeCH--HHHH
Confidence 567899999999996 2 25888 88875 67899999999876642 12245 55877 2444
Q ss_pred HHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHC--C-cEEEE
Q 007226 113 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDN--G-RKGAT 189 (612)
Q Consensus 113 ~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~--G-ikyv~ 189 (612)
.+++-|.+.+. ...+++++ |..=-++|- -.+.+++ +.++ + =.-+.
T Consensus 67 ~v~~ql~~~~~---------------------~~~~ii~E-P~~rnTApa---ialaa~~-------~~~~~~~~~~~v~ 114 (478)
T PRK15460 67 IVAEQLRQLNK---------------------LTENIILE-PAGRNTAPA---IALAALA-------AKRHSPESDPLML 114 (478)
T ss_pred HHHHHHHhcCC---------------------ccccEEec-CCCCChHHH---HHHHHHH-------HHHhcCCCCCeEE
Confidence 44444443221 01234443 111122331 1222221 1222 2 24677
Q ss_pred EEecCCCccccchhhHHHh--hhhhh-cCCceeEEEEeecCCCcccceEEEEEecCCCc-eecceEEEEecccCccCcCC
Q 007226 190 VRQVSNVVAATDLTLLALA--GIGLH-HGKKLGFASCKRSSGATEGINVLIEKKNLDGK-WAYGLSCIEYTEFDKFGITR 265 (612)
Q Consensus 190 v~~vDN~la~~Dp~i~~~~--G~~~~-~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~-~~~~~~vVEYsel~~~~~~~ 265 (612)
|...|......+ .|...+ +.... .+.=+.+- ++-+.|+.+=|-+-.-...++. ......|....|=|+....+
T Consensus 115 vlPaDH~I~d~~-~F~~~i~~A~~~A~~~~lvt~G--I~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~ 191 (478)
T PRK15460 115 VLAADHVIADED-AFRAAVRNAMPYAEAGKLVTFG--IVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQ 191 (478)
T ss_pred EeccccccCCHH-HHHHHHHHHHHHHhcCCEEEEe--cCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHH
Confidence 888887765531 121111 12222 22222333 2234566677777321000000 00012344455555543221
Q ss_pred CCCCCCCccccccceeeEEEEeHHHHHhhhcc
Q 007226 266 GPFSSNGLQADFPANTNILYVDLASAELVGSS 297 (612)
Q Consensus 266 ~~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~~ 297 (612)
.=..+| .|--|.-++.|+.+.+.+.+++
T Consensus 192 ~yl~~G----~y~WNsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 192 AYVASG----EYYWNSGMFLFRAGRYLEELKK 219 (478)
T ss_pred HHHHcC----CEEEecceeheeHHHHHHHHHH
Confidence 001123 2545999999999999999886
No 95
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=91.30 E-value=0.4 Score=48.07 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=41.3
Q ss_pred EEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCc-hHHHHHH
Q 007226 39 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN-HERITSL 117 (612)
Q Consensus 39 vvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T-~~~T~~~ 117 (612)
.|+||||.++||| .|. ++++ .|++++++.++.+.+.+ ..-.++|-|+.. - ++...++
T Consensus 2 aiIlA~G~S~R~~---~K~--ll~l-----~Gkpli~~~i~~l~~~~----------~~~~ivVv~~~~--~~~~~i~~~ 59 (233)
T cd02518 2 AIIQARMGSTRLP---GKV--LKPL-----GGKPLLEHLLDRLKRSK----------LIDEIVIATSTN--EEDDPLEAL 59 (233)
T ss_pred EEEeeCCCCCCCC---CCc--cccc-----CCccHHHHHHHHHHhCC----------CCCeEEEECCCC--cccHHHHHH
Confidence 4789999999996 487 7776 79999999998886532 011466666651 2 2566666
Q ss_pred HH
Q 007226 118 CE 119 (612)
Q Consensus 118 le 119 (612)
+.
T Consensus 60 ~~ 61 (233)
T cd02518 60 AK 61 (233)
T ss_pred HH
Confidence 65
No 96
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=89.23 E-value=0.48 Score=49.72 Aligned_cols=63 Identities=24% Similarity=0.479 Sum_probs=45.4
Q ss_pred EEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHHHH
Q 007226 39 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 118 (612)
Q Consensus 39 vvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~~l 118 (612)
.|++|.|+|||+ +..-| .+|-+|+|+-+|...|++++...+. | .--++|.|+. +...+.++|
T Consensus 7 AViPaAGlGTRf-LPATK---aiPKEMLPIvdKP~IqYiVeEa~~a--------G---Ie~i~iVTgr---~K~~IeDhF 68 (291)
T COG1210 7 AVIPAAGLGTRF-LPATK---AIPKEMLPIVDKPLIQYIVEEAVAA--------G---IEEILIVTGR---GKRAIEDHF 68 (291)
T ss_pred EEEEccCccccc-ccccc---cCchhhccccCchhHHHHHHHHHHc--------C---CCEEEEEecC---CcchHHHhC
Confidence 467899999999 54444 5666777778899999999976554 4 3367888887 444565555
Q ss_pred H
Q 007226 119 E 119 (612)
Q Consensus 119 e 119 (612)
.
T Consensus 69 D 69 (291)
T COG1210 69 D 69 (291)
T ss_pred c
Confidence 4
No 97
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.09 E-value=1.2 Score=47.64 Aligned_cols=199 Identities=14% Similarity=0.113 Sum_probs=104.4
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHH
Q 007226 38 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 113 (612)
Q Consensus 38 avvlLaGGlGTRLG----~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~ 113 (612)
.-|+||||.||||= -..||- -|.+. +++|+||-.++|+..+. + .-.+++.|+. +-...
T Consensus 3 ~pvIlaGG~GsRLWPLSR~~~PKQ--Fl~L~----~~~Sllq~T~~R~~~l~-------~---~~~~~vVtne--~~~f~ 64 (333)
T COG0836 3 IPVILAGGSGSRLWPLSRKDYPKQ--FLKLF----GDLSLLQQTVKRLAFLG-------D---IEEPLVVTNE--KYRFI 64 (333)
T ss_pred eeEEEeCCCccccCCcCcccCCcc--ceeeC----CCCcHHHHHHHHHhhcC-------C---ccCeEEEeCH--HHHHH
Confidence 45789999999994 257787 77664 78999999999998864 1 2245555665 13333
Q ss_pred HHHHHHHcccCCCCCCceEEEEecccceEec--CCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEE
Q 007226 114 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDA--EDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 191 (612)
Q Consensus 114 T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~--~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~ 191 (612)
+++ .+|-+.. ..+ ++++.-. =-++| --.+.+ +.-..+.|=--+.|.
T Consensus 65 v~e---------------------ql~e~~~~~~~~-illEP~g-RnTAp---AIA~aa------~~~~~~~~d~~~lVl 112 (333)
T COG0836 65 VKE---------------------QLPEIDIENAAG-IILEPEG-RNTAP---AIALAA------LSATAEGGDALVLVL 112 (333)
T ss_pred HHH---------------------HHhhhhhccccc-eEeccCC-CCcHH---HHHHHH------HHHHHhCCCcEEEEe
Confidence 333 3333221 112 4443111 11222 111222 233344453457777
Q ss_pred ecCCCccccchhhHHHhhhh---hhcCCceeEEEEeecCCCcccceEEEEE-ecCC-CceecceEEEEecccCccCcCCC
Q 007226 192 QVSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEK-KNLD-GKWAYGLSCIEYTEFDKFGITRG 266 (612)
Q Consensus 192 ~vDN~la~~Dp~i~~~~G~~---~~~~~~~~~~~v~rK~~~~e~vGvl~~~-~~~d-G~~~~~~~vVEYsel~~~~~~~~ 266 (612)
..|-.....+ .|...+.-. +.++.-+.|-.++ +.|..|-|-+-.- ...+ |- ..|-+.-|=|+....+.
T Consensus 113 psDH~I~d~~-af~~av~~A~~~A~~g~lVTfGI~P--t~PeTGYGYIe~G~~~~~~~~----~~V~~FvEKPd~etA~~ 185 (333)
T COG0836 113 PSDHVIADEE-AFLNAVKKAEKAAEEGGIVTFGIPP--TRPETGYGYIETGESIAENGV----YKVDRFVEKPDLETAKK 185 (333)
T ss_pred cCcceeccHH-HHHHHHHHHHHHHHcCCEEEEecCC--CCCccCcceeecCcccccCCc----eEeeeeeeCCCHHHHHH
Confidence 7777665431 221111111 1233334444333 2355566666220 0001 22 45666667676643321
Q ss_pred CCCCCCccccccceeeEEEEeHHHHHhhhcc
Q 007226 267 PFSSNGLQADFPANTNILYVDLASAELVGSS 297 (612)
Q Consensus 267 ~~~dg~~~s~f~~Ninnl~~~L~~l~~~l~~ 297 (612)
=+..| .|--|-..+.|+.+.+.+.+++
T Consensus 186 yv~sG----~y~WNSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 186 YVESG----EYLWNSGMFLFRASVFLEELKK 212 (333)
T ss_pred HHHcC----ceEeeccceEEEHHHHHHHHHh
Confidence 12233 3545999999999999888875
No 98
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=85.37 E-value=0.62 Score=46.65 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=44.3
Q ss_pred EEEecCCccccCC---CCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 39 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 39 vvlLaGGlGTRLG---~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
.|+||-|+|||+- ++-||+ +|.| .|+.+++.++++++... .--.+|.|.. -++ --
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~--LlkV-----~g~plIErqI~~L~e~g-----------I~dI~IVvGY---lkE-~F 60 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKS--LLKV-----NGEPLIERQIEQLREAG-----------IDDITIVVGY---LKE-QF 60 (231)
T ss_pred eEEEecccccccccccccCChH--HHHh-----cCcccHHHHHHHHHHCC-----------CceEEEEeee---hHH-HH
Confidence 5789999999975 689999 8887 79999999998886642 2246777776 333 34
Q ss_pred HHHHH
Q 007226 116 SLCER 120 (612)
Q Consensus 116 ~~le~ 120 (612)
+||++
T Consensus 61 eYLkd 65 (231)
T COG4750 61 EYLKD 65 (231)
T ss_pred HHHHH
Confidence 55553
No 99
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=79.34 E-value=2.3 Score=42.82 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=41.3
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCC
Q 007226 35 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 106 (612)
Q Consensus 35 ~k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~ 106 (612)
.+++.|+||=|.|+||| .+|- ++|. .|++++...+++.+... ++ -+++-|+.
T Consensus 4 ~~v~~VvLAAGrssRmG--~~Kl--Lap~-----~g~plv~~~~~~a~~a~------~~-----~vivV~g~ 55 (199)
T COG2068 4 STVAAVVLAAGRSSRMG--QPKL--LAPL-----DGKPLVRASAETALSAG------LD-----RVIVVTGH 55 (199)
T ss_pred cceEEEEEcccccccCC--Ccce--eccc-----CCCcHHHHHHHHHHhcC------CC-----eEEEEeCc
Confidence 37899999999999999 7887 7765 89999999998876531 22 46777876
No 100
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=78.99 E-value=33 Score=34.63 Aligned_cols=183 Identities=13% Similarity=0.168 Sum_probs=93.4
Q ss_pred EEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHHHH
Q 007226 39 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 118 (612)
Q Consensus 39 vvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~~l 118 (612)
+|++|.|.++||+ .|. ++++ .|++++++.+++.++.. ... .+++ .++ ++++.++.
T Consensus 2 aiIpArG~Skr~~---~Kn--l~~l-----~GkpLi~~ti~~a~~s~-----~~d-----~IvV-std----~~~i~~~a 56 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKN--IKPF-----CGKPMIAYSIEAALNSG-----LFD-----KVVV-STD----DEEIAEVA 56 (222)
T ss_pred EEEccCCCCCCCC---Ccc--chhc-----CCcCHHHHHHHHHHhCC-----CCC-----EEEE-eCC----CHHHHHHH
Confidence 4788999999995 476 6555 79999999999876642 111 2344 333 36677777
Q ss_pred HHcccCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHH-CCcEEEEEEecCCCc
Q 007226 119 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD-NGRKGATVRQVSNVV 197 (612)
Q Consensus 119 e~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~-~Gikyv~v~~vDN~l 197 (612)
+++ |. .| |... . ..++.---|-.++.... ++.+.. ...+++.+.+.|.++
T Consensus 57 ~~~---g~---~v--------~~~r-~---------~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl 107 (222)
T TIGR03584 57 KSY---GA---SV--------PFLR-P---------KELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPF 107 (222)
T ss_pred HHc---CC---Ee--------EEeC-h---------HHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCc
Confidence 653 32 11 1111 0 01111111222322221 233322 346889999999999
Q ss_pred cccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCCCCCccccc
Q 007226 198 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 277 (612)
Q Consensus 198 a~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~dg~~~s~f 277 (612)
...+- +-.++......+++..+.++....++... ... ..+|+ +.+.-...... .. .+....|
T Consensus 108 ~~~~~-I~~~i~~~~~~~~ds~~sv~~~~~~~~~~--~~~---~~~g~----~~~~~~~~~~~---~r-----Qd~~~~y 169 (222)
T TIGR03584 108 LQAKI-LKEAFELLKQPNAHFVFSVTSFAFPIQRA--FKL---KENGG----VEMFFPEHFNT---RS-----QDLEEAY 169 (222)
T ss_pred CCHHH-HHHHHHHHHhCCCCEEEEeeccCCChHHh--eEE---CCCCc----EEecCCCcccC---CC-----CCCchhe
Confidence 98621 11223344445567666653322122111 121 14565 33322111111 11 1111245
Q ss_pred cceeeEEEEeHHHHHh
Q 007226 278 PANTNILYVDLASAEL 293 (612)
Q Consensus 278 ~~Ninnl~~~L~~l~~ 293 (612)
.-|-+..+++.+.+.+
T Consensus 170 ~~nga~y~~~~~~~~~ 185 (222)
T TIGR03584 170 HDAGQFYWGKSQAWLE 185 (222)
T ss_pred eeCCeEEEEEHHHHHh
Confidence 4599999999998765
No 101
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=77.80 E-value=19 Score=40.51 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=59.4
Q ss_pred ceeceEEEeeeEEeeCc---EEeeeCCCceecccceeeeEEEEEEeccceeEeeceeEecCeEEEecCC----eEEEEee
Q 007226 500 YRCGRCKLNNVKVLNKG---IDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDG----HKLKITS 572 (612)
Q Consensus 500 ~~~~~~~~~~~~V~N~G---~~~~~~~~~~w~~~~~r~e~~~i~~~g~~~f~a~~v~~~g~~~~~vp~g----~~~~~~~ 572 (612)
..|-+++|+|.+++|-| +..+.++...-.+.+.-.....|++ |+++++.++||++....|+ +|+.+-+
T Consensus 141 ~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~l-----w~S~g~~V~~N~I~g~RD~gi~i~r~~~~~ 215 (455)
T TIGR03808 141 QGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVS-----FDALGLIVARNTIIGANDNGIEILRSAIGD 215 (455)
T ss_pred ccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEE-----eccCCCEEECCEEEccCCCCeEEEEeeecC
Confidence 56778999999999885 5555566777778888777777654 8999999999999999998 5665544
Q ss_pred CCCceEEEeccccc
Q 007226 573 GNSGLVVQLDPIEQ 586 (612)
Q Consensus 573 ~~~~~~~~~~~~~~ 586 (612)
|+. .+.-.+++.
T Consensus 216 dg~--~v~~n~i~~ 227 (455)
T TIGR03808 216 DGT--IVTDNRIED 227 (455)
T ss_pred Ccc--eeecccccc
Confidence 533 444444443
No 102
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=48.67 E-value=99 Score=30.16 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=47.7
Q ss_pred ceEEEEEEEEEeccCCCCceecCCCcceeeccceeceEEEeeeEEe----eCcEEeeeCCC---------------ceec
Q 007226 468 NVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVL----NKGIDWDCGDN---------------TYWK 528 (612)
Q Consensus 468 ~v~ldG~l~I~a~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~V~----N~G~~~~~~~~---------------~~w~ 528 (612)
..++.|.+.|.+.++.-=+- -| ++| .+.++++.+- ++|....+.|. .||+
T Consensus 49 ~~EiV~t~KiyNPN~fPipV---tg---l~y-----~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~ke~w~ 117 (161)
T COG5608 49 ETEIVGTLKIYNPNPFPIPV---TG---LQY-----AVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIKEWWV 117 (161)
T ss_pred ceEEEEEEEecCCCCcceee---ec---eEE-----EEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHHHHHH
Confidence 34677888888776421100 00 233 3555555543 77777777665 6899
Q ss_pred ccceeeeEEEEEEeccceeEeec
Q 007226 529 HDVQWFEALKVILHGNAEFEASD 551 (612)
Q Consensus 529 ~~~~r~e~~~i~~~g~~~f~a~~ 551 (612)
-.+++.|.-+|..++++++++.-
T Consensus 118 ~hi~ngErs~Ir~~i~~~v~vg~ 140 (161)
T COG5608 118 THIENGERSTIRVRIKGVVKVGG 140 (161)
T ss_pred HHhhccCcccEEEEEEEEEEEcc
Confidence 89999999888888888887643
No 103
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=46.98 E-value=17 Score=41.29 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=44.8
Q ss_pred ceEEEEecc---cceEecCCCeeeeecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEecCCCccc
Q 007226 130 SFQLFEQPL---VPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 199 (612)
Q Consensus 130 qV~~F~Q~~---vP~l~~~dg~~~l~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~vDN~la~ 199 (612)
+|.|=.|.. --+++ .|..+..++.+++..-|.|||.+.. -|.+..-.-|||=|+||+...
T Consensus 235 ~IsfS~Qk~sTDTIAv~-~dN~pFR~~dG~LlFRPgGHGALie---------NLN~ldaDiIFIKNIDNVvpd 297 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAVD-PDNTPFRNEDGSLLFRPGGHGALIE---------NLNDLDADIIFIKNIDNVVPD 297 (513)
T ss_pred EEEecccCCCCCeeEEC-CCCCccCCCCCCEEeCCCcchHHHh---------hhccccCCEEEEeCccccCCc
Confidence 455555543 34666 5678888889999999999998654 445556688999999999864
No 104
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=46.71 E-value=69 Score=28.43 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=47.4
Q ss_pred eeeeEEEEEEeccceeEeeceeEecCeEEEecCCeEEEEeeCCCce---EEEeccccccccCCCcceEEEEEeC
Q 007226 532 QWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGL---VVQLDPIEQNMMDTGSWHWNYKING 602 (612)
Q Consensus 532 ~r~e~~~i~~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~ 602 (612)
.-+|++-.+++|.+++..+..++.-.+.....+|-.++++.+..+. -..=.||.+ .--|+|.|-|+.
T Consensus 18 ~~~~~~iyv~~G~~~v~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~GePl~E----pi~~~GpFVmnt 87 (104)
T PF05726_consen 18 PGHNAFIYVLEGSVEVGGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLGGEPLNE----PIVQYGPFVMNT 87 (104)
T ss_dssp TT-EEEEEEEESEEEETTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEEE----S------EEETTEEESS
T ss_pred CCCEEEEEEEECcEEECCCcceECCCcEEEECCCceEEEEECCCCcEEEEEEccCCCC----CEEEECCcccCC
Confidence 4478899999999988777777888888888899999998875544 344478876 367899999965
No 105
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=46.06 E-value=2.8e+02 Score=31.59 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=51.2
Q ss_pred eEEEeeeEEeeCcEEeeeCCCceeccc--ceeeeEEEEEEeccc----eeEeeceeEecCeEEEecCCeEEEEeeCC-Cc
Q 007226 504 RCKLNNVKVLNKGIDWDCGDNTYWKHD--VQWFEALKVILHGNA----EFEASDVTLQGNHVFEVPDGHKLKITSGN-SG 576 (612)
Q Consensus 504 ~~~~~~~~V~N~G~~~~~~~~~~w~~~--~~r~e~~~i~~~g~~----~f~a~~v~~~g~~~~~vp~g~~~~~~~~~-~~ 576 (612)
.+.|+|++|+|.|.+|...+.-.+-.. =.+.|-|+| .+++ -++..++++.+|....-++-. |..-+ .+
T Consensus 116 nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L--~gsg~FGI~L~~~~~~I~~N~I~g~~~~~---I~lw~S~g 190 (455)
T TIGR03808 116 GIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEI--TGSGGNGIWLETVSGDISGNTITQIAVTA---IVSFDALG 190 (455)
T ss_pred CeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEE--EcCCcceEEEEcCcceEecceEeccccce---EEEeccCC
Confidence 589999999999998875444222222 233333333 5554 223333555555555544433 22222 37
Q ss_pred eEEEeccccccccCCCc-----ceEEEEEeCceE
Q 007226 577 LVVQLDPIEQNMMDTGS-----WHWNYKINGSHI 605 (612)
Q Consensus 577 ~~~~~~~~~~~~~~~~~-----~~w~~~~~~~~~ 605 (612)
+.++-+-|.. ... ++|.|.-|+.-|
T Consensus 191 ~~V~~N~I~g----~RD~gi~i~r~~~~~dg~~v 220 (455)
T TIGR03808 191 LIVARNTIIG----ANDNGIEILRSAIGDDGTIV 220 (455)
T ss_pred CEEECCEEEc----cCCCCeEEEEeeecCCccee
Confidence 7777777765 344 677666555533
No 106
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=45.01 E-value=1.2e+02 Score=28.10 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=50.1
Q ss_pred cCCCcEEEEEeceEEEeceEEEEEEEEEeccCCCCceecCCCcceeeccceeceEEEeeeEEeeCcEEeeeCCC--ceec
Q 007226 451 VSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--TYWK 528 (612)
Q Consensus 451 i~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~V~N~G~~~~~~~~--~~w~ 528 (612)
|.++.++.++.+....+.+.+.|.|++..+. .. .++.+.+.|.+.| .+...++ -|
T Consensus 17 I~~g~~v~lD~~~~~l~~l~I~G~L~f~~~~--~~------------------~L~a~~I~V~~Gg-~l~iGs~~~P~-- 73 (125)
T PF10162_consen 17 IPAGQTVLLDVSTPKLGSLIIGGTLIFDDDR--DI------------------TLRAEYILVEGGG-RLIIGSEDCPF-- 73 (125)
T ss_pred ECCCCEEEEcCCChheeEEEEEEEEEEccCC--CC------------------EEEEEEEEECCCC-eEEecCCCCCc--
Confidence 8899999999988899999999999997543 12 5677777887776 5554443 44
Q ss_pred ccceeeeEEEEEEeccce
Q 007226 529 HDVQWFEALKVILHGNAE 546 (612)
Q Consensus 529 ~~~~r~e~~~i~~~g~~~ 546 (612)
.-..+|.|+|+..
T Consensus 74 -----~~~~~I~L~G~~~ 86 (125)
T PF10162_consen 74 -----QGKATITLYGRRS 86 (125)
T ss_pred -----CceEEEEEEcCCC
Confidence 3356788998643
No 107
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=44.25 E-value=35 Score=35.20 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=47.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHH
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 115 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~ 115 (612)
++++|+=| |||.+.-+|-.++|+ .+.+++++++++++.... .=-++|-||+. .+++...
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL-----~~~pmI~~~lervrks~~----------~d~ivvATS~~-~~d~~l~ 61 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL-----GGEPMIEYQLERVRKSKD----------LDKIVVATSDK-EEDDALE 61 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc-----CCCchHHHHHHHHhcccc----------ccceEEEecCC-cchhHHH
Confidence 44555544 777775554226665 688999999999877642 22589999994 7777788
Q ss_pred HHHHHccc
Q 007226 116 SLCERLRW 123 (612)
Q Consensus 116 ~~le~~~~ 123 (612)
+++.++.+
T Consensus 62 ~~~~~~G~ 69 (241)
T COG1861 62 EVCRSHGF 69 (241)
T ss_pred HHHHHcCe
Confidence 88888774
No 108
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=35.86 E-value=48 Score=32.45 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=21.6
Q ss_pred cCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHH
Q 007226 49 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQARE 85 (612)
Q Consensus 49 RLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq 85 (612)
|+|.++-++=-+.+ +.|++++++.++++++.+
T Consensus 7 R~gS~rlp~Knl~~-----l~gkpLi~~~i~~a~~s~ 38 (217)
T PF02348_consen 7 RGGSKRLPGKNLKP-----LGGKPLIEYVIERAKQSK 38 (217)
T ss_dssp -SSSSSSTTGGGSE-----ETTEEHHHHHHHHHHHTT
T ss_pred CCCCCCCCcchhhH-----hCCccHHHHHHHHHHhCC
Confidence 66666555411333 489999999999998754
No 109
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=29.65 E-value=5.2e+02 Score=28.20 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=104.7
Q ss_pred EEEEEecCC--cccc---CCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCch
Q 007226 37 LGEIYPLGG--SADR---LGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 111 (612)
Q Consensus 37 ~avvlLaGG--lGTR---LG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~ 111 (612)
.|||++ || -||| |-++-||- ++|+ .|....+..+....++..|+ =+++..|. -.
T Consensus 4 ~AVIlV-GGP~kGTRFRPLSf~vPKP--Lfpi-----aG~pmI~Hhi~ac~qi~~l~-----------eI~LvGFy--~e 62 (407)
T KOG1460|consen 4 KAVILV-GGPQKGTRFRPLSFNVPKP--LFPI-----AGVPMIHHHISACKQISGLA-----------EILLVGFY--EE 62 (407)
T ss_pred EEEEEe-cCCCCCccccccccCCCCC--cccc-----CCcchhhhhHHHHhcccchh-----------heeEEecc--cc
Confidence 355555 66 4999 56899998 9988 57778888877766654322 23344553 45
Q ss_pred HHHHHHHHHcc-cCCCCCCceEEEEecccceEecCCCeeeeecCCCCcccCCCCc-hHhHHHHhcCchhHHHHCCcEEEE
Q 007226 112 ERITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGAT 189 (612)
Q Consensus 112 ~~T~~~le~~~-~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l~~~~~l~~~P~GhG-dI~~aL~~sGlLd~l~~~Gikyv~ 189 (612)
+.-..|+.+-. .| ++|. ++--+.+|.|-| ++|. + =|+..+---..+|
T Consensus 63 ~~f~~fis~~~~e~-------------~~pv------------rYL~E~~plGtaGgLyh-F-----rdqIl~g~ps~vF 111 (407)
T KOG1460|consen 63 RVFTDFISAIQQEF-------------KVPV------------RYLREDNPLGTAGGLYH-F-----RDQILAGSPSAVF 111 (407)
T ss_pred hHHHHHHHHHHhhc-------------ccch------------hhhccCCCCCcccceee-h-----hhHHhcCCCceEE
Confidence 55666666532 12 1221 123456788885 5553 2 2445555678899
Q ss_pred EEecCCCccccchhhHHHhhhhhhcCCceeEEEEeecCCCcccceEEEEEecCCCceecceEEEEecccCccCcCCCCCC
Q 007226 190 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 269 (612)
Q Consensus 190 v~~vDN~la~~Dp~i~~~~G~~~~~~~~~~~~~v~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~ 269 (612)
+.|.|=...+.=+ .++..+...+.-+.+.+..-.+..+..-|.|++. -..|+ ++-|.|=|.--..+
T Consensus 112 vlnaDVCcsfPl~---~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~d-P~t~e------vlHYveKPsTfvSd---- 177 (407)
T KOG1460|consen 112 VLNADVCCSFPLQ---DMLEAHRRYGGIGTLLVTKVSREQASNFGCLVED-PSTGE------VLHYVEKPSTFVSD---- 177 (407)
T ss_pred EEecceecCCcHH---HHHHHHhhcCCceEEEEEEecHhHhhccCeeeec-CCcCc------eEEeecCcchhhhc----
Confidence 9999877666522 3356666667777666522112223457777651 12343 77787765432110
Q ss_pred CCCccccccceeeEEEEeHHHHHhh
Q 007226 270 SNGLQADFPANTNILYVDLASAELV 294 (612)
Q Consensus 270 dg~~~s~f~~Ninnl~~~L~~l~~~ 294 (612)
.-|.....|+-+.++.+
T Consensus 178 --------~InCGvYlF~~eif~~i 194 (407)
T KOG1460|consen 178 --------IINCGVYLFTPEIFNAI 194 (407)
T ss_pred --------ccceeEEEecHHHHHHH
Confidence 12555667776654443
No 110
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=27.34 E-value=3.1e+02 Score=29.21 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=45.0
Q ss_pred eEEEeeeEEeeCcEEeeeCCCceecccceeeeEEEEEEeccceeEeeceeEe--cCeEEEecCCeE-EEEeeC
Q 007226 504 RCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQ--GNHVFEVPDGHK-LKITSG 573 (612)
Q Consensus 504 ~~~~~~~~V~N~G~~~~~~~~~~w~~~~~r~e~~~i~~~g~~~f~a~~v~~~--g~~~~~vp~g~~-~~~~~~ 573 (612)
|+.+.++.=.++-.......+.-=...+.|+|.|-|.|-|.+..++.+.+++ +..+.=||-|-+ .++++.
T Consensus 44 r~i~gg~~p~~~~l~l~~~~~~~~~~fl~rrE~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~ 116 (276)
T PRK00924 44 RIIVGGAMPVTKPLKLEAGKQLGVSYFLERRELGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASA 116 (276)
T ss_pred eEEEcccccCCCceecccCccccceeecCCcEEEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEec
Confidence 3334333333444444433333334689999999999999999888776654 455667899977 556433
No 111
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=26.65 E-value=2.3e+02 Score=29.79 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=42.2
Q ss_pred ceecccceeeeEEEEEEeccceeEee---ceeEecC--------eEEEecCCeEEEEeeCCC-ceEEEecccc
Q 007226 525 TYWKHDVQWFEALKVILHGNAEFEAS---DVTLQGN--------HVFEVPDGHKLKITSGNS-GLVVQLDPIE 585 (612)
Q Consensus 525 ~~w~~~~~r~e~~~i~~~g~~~f~a~---~v~~~g~--------~~~~vp~g~~~~~~~~~~-~~~~~~~~~~ 585 (612)
.-+..+..|+|.+-|.|.|.++++.. --.+.+- .+.=||-|.+.+|+...+ .+.+.-+|-+
T Consensus 38 ~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sapa~ 110 (261)
T PF04962_consen 38 ESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSAPAH 110 (261)
T ss_dssp HCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEEE-S
T ss_pred CEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEccccC
Confidence 56677799999999999999999984 3445554 788899999999987643 4444444433
No 112
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=26.37 E-value=1.6e+02 Score=26.51 Aligned_cols=47 Identities=13% Similarity=0.369 Sum_probs=32.5
Q ss_pred EEEecCCeEEEEeeCCCceEEEeccccccccCCCcceEEEEE-eCceEEE
Q 007226 559 VFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKI-NGSHIVL 607 (612)
Q Consensus 559 ~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~ 607 (612)
-++||+|-.+.+.|+ |.++-|..+.+..-.+.+-.-...+ +++.|.+
T Consensus 62 ~i~ipa~~~v~l~pg--g~HlmL~g~~~~l~~G~~v~ltL~f~~gg~v~v 109 (110)
T PF04314_consen 62 SIPIPAGSTVELKPG--GYHLMLMGLKRPLKPGDTVPLTLTFEDGGKVTV 109 (110)
T ss_dssp -EEEETT-EEEE-CC--CCEEEEECESS-B-TTEEEEEEEEETTTEEEEE
T ss_pred CEEECCCCeEEecCC--CEEEEEeCCcccCCCCCEEEEEEEECCCCEEEe
Confidence 789999999999888 6888888887765566666667777 5576665
No 113
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=25.56 E-value=1.1e+02 Score=32.80 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=32.6
Q ss_pred eceeEecCeEEEecCCeEEEEeeCCCceEEEeccccccccCCC
Q 007226 550 SDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTG 592 (612)
Q Consensus 550 ~~v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (612)
.+..++.+++|..|.|+.|.++.++++.+..+++-.+.....|
T Consensus 225 ~~~~~~~~~vy~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 267 (354)
T PRK00742 225 DGERLKPGHAYIAPGGKHMMVARSGANYRIKLDDGPPVNRHRP 267 (354)
T ss_pred CCCEeeCCEEEEcCCCCEEEEEecCCceEEEECCCCCcCCCCC
Confidence 3567889999999999999998766677777777655333334
No 114
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=25.17 E-value=71 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.143 Sum_probs=21.3
Q ss_pred EeeCcEEeeeCCCceec--ccceeeeEEEEEEec
Q 007226 512 VLNKGIDWDCGDNTYWK--HDVQWFEALKVILHG 543 (612)
Q Consensus 512 V~N~G~~~~~~~~~~w~--~~~~r~e~~~i~~~g 543 (612)
|+|.||.--..+..+-. -+-.|.|+++|.|.|
T Consensus 2 vq~~GW~~~~~~G~~aGt~G~~~rlEai~i~L~~ 35 (36)
T PF07538_consen 2 VQNIGWQDWVSNGQTAGTTGQGLRLEAIKIKLTG 35 (36)
T ss_pred cccccCcchhhCceecccCCCCcEEEEEEEEEeC
Confidence 67888873222223332 567899999999876
No 115
>smart00613 PAW domain present in PNGases and other hypothetical proteins. present in several copies in proteins with unknown function in C. elegans
Probab=24.65 E-value=1.7e+02 Score=25.87 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=35.7
Q ss_pred cCCCcceeeccceeceEEEeee-EEee--CcEEeeeC------CC-ceecccce----eeeEEEEEEecccee
Q 007226 489 ADNGESILQYGYRCGRCKLNNV-KVLN--KGIDWDCG------DN-TYWKHDVQ----WFEALKVILHGNAEF 547 (612)
Q Consensus 489 ~~~g~~~~~~~~~~~~~~~~~~-~V~N--~G~~~~~~------~~-~~w~~~~~----r~e~~~i~~~g~~~f 547 (612)
..||.++..+ .++|+ +|.. ..|.+..+ +. .+|++++. ..|..+|++.|.-++
T Consensus 22 ~~dGs~v~~~-------~~~nIeR~vd~~~~~~~~~~~~~e~~~~~I~WkFdl~~~g~~V~ki~Ir~~g~~~~ 87 (89)
T smart00613 22 NEDGSPVQPY-------EVKNIERVVDKELNEVYLHKKRPEEEGNYIYWKFDLKSTGKSVEKVVIRMSGIEEI 87 (89)
T ss_pred CCCCceeeeE-------EEeeEEEEEeccCCeEEEEEecCCCCCceEEEEEEccCCCcEEEEEEEEEceEEEe
Confidence 4566666333 47777 6766 56666554 33 89998876 689999999886543
No 116
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=23.23 E-value=89 Score=35.81 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=23.9
Q ss_pred eecCCCcccceEEEEEecCCCceecceEEEEecccCccC
Q 007226 224 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG 262 (612)
Q Consensus 224 ~rK~~~~e~vGvl~~~~~~dG~~~~~~~vVEYsel~~~~ 262 (612)
||..++. |+|=+-. ++.||. ..+++||-+|++...
T Consensus 383 VkNeGEP-GGGPFwv-~~~dG~--~SLQIvEssQId~~~ 417 (513)
T PF14134_consen 383 VKNEGEP-GGGPFWV-KNEDGT--VSLQIVESSQIDMSN 417 (513)
T ss_pred cccCCCC-CCCCeEE-ECCCCC--EeeeeehhhhcCCCC
Confidence 7766543 4555533 267886 348999999998874
No 117
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=22.91 E-value=1.6e+02 Score=26.41 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=22.7
Q ss_pred EEEEEEeccceeEeeceeEecCeEEEecCCeEEEEeeC
Q 007226 536 ALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSG 573 (612)
Q Consensus 536 ~~~i~~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~~ 573 (612)
+|++.|.|..|+ .++.+...|+||+.-+..++-.
T Consensus 51 ~l~V~lpg~~ew----~~~~aGesF~VpanssF~v~v~ 84 (94)
T PF06865_consen 51 ELEVKLPGEDEW----QTYSAGESFEVPANSSFDVKVK 84 (94)
T ss_dssp EEEEEETT-SS-----EEEETT-EEEE-TTEEEEEEES
T ss_pred EEEEEcCCCccc----EEeCCCCeEEECCCCeEEEEEC
Confidence 456667776666 6788999999999987776643
No 118
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.75 E-value=2.9e+02 Score=27.93 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHHHHHhHhhcCCcceeeEEEecCCCCCchHHHHHHHHHcccCCCCCCceEEEEecccceEecCCCeeee
Q 007226 72 TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLV 151 (612)
Q Consensus 72 s~Lql~~e~I~~lq~la~k~~g~~~~iPl~IMTS~~~~T~~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~~~dg~~~l 151 (612)
...+-.++.|.+|+.-+ +. ..||++----.. +-.++-+.+|++-=-=|++... -.|.-+-.+....+.++|
T Consensus 51 ~~~~~li~Ni~~Lr~~~-~~----~giPVvyTaqp~-~qs~~draLL~d~WGpgl~~~p---~~~~vv~~l~P~~~D~vL 121 (218)
T COG1535 51 PLMEQLIANIAKLRIWC-KQ----AGIPVVYTAQPG-EQSPEDRALLKDFWGPGLTASP---EQQKVVDELAPGADDTVL 121 (218)
T ss_pred ccHHHHHHHHHHHHHHH-HH----cCCcEEEEecCC-cCCHHHHHHHHHhcCCCCCCCh---hhhhhHHhcCCCCCceEE
Confidence 36677888888887533 33 357877655552 4566677888764333454331 223333233323333333
Q ss_pred ecCCCCcccCCCCchHhHHHHhcCchhHHHHCCcEEEEEEec
Q 007226 152 MRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 193 (612)
Q Consensus 152 ~~~~~l~~~P~GhGdI~~aL~~sGlLd~l~~~Gikyv~v~~v 193 (612)
-+ | -|.|+++|.++++|++.|+..+.+-.|
T Consensus 122 ~k-----w-------rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 122 TK-----W-------RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred ee-----e-------ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 22 1 289999999999999999998876554
No 119
>PRK10579 hypothetical protein; Provisional
Probab=20.73 E-value=1.4e+02 Score=26.73 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=25.0
Q ss_pred EEEEEEeccceeEeeceeEecCeEEEecCCeEEEEee
Q 007226 536 ALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITS 572 (612)
Q Consensus 536 ~~~i~~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~ 572 (612)
+|+|.|-|..|+ .++.+...|+||++-+..|+-
T Consensus 51 ~l~V~Lpg~~ew----~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 51 ALNVLLPGATDW----QVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred EEEEECCCCccc----EEeCCCCEEEECCCCeEEEEE
Confidence 456667776665 688899999999988776653
No 120
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=20.64 E-value=41 Score=29.87 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=14.7
Q ss_pred cCCccccCC--CCCCCCCceee
Q 007226 43 LGGSADRLG--LVDHETGECLP 62 (612)
Q Consensus 43 aGGlGTRLG--~~~pK~g~~lp 62 (612)
++|.|+||| |. ||+|+++=
T Consensus 69 ~~G~G~~~G~aYr-l~~Gk~I~ 89 (92)
T PF09919_consen 69 GSGSGERLGTAYR-LKDGKLIY 89 (92)
T ss_pred CCCCCeECeEEEE-cCCceEEE
Confidence 799999999 45 77776653
No 121
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.37 E-value=1.3e+02 Score=29.71 Aligned_cols=50 Identities=22% Similarity=0.502 Sum_probs=36.8
Q ss_pred ceecccceeeeEEEEEEeccceeEeece-------eEecCeEEEecCC--eEEEEeeCC
Q 007226 525 TYWKHDVQWFEALKVILHGNAEFEASDV-------TLQGNHVFEVPDG--HKLKITSGN 574 (612)
Q Consensus 525 ~~w~~~~~r~e~~~i~~~g~~~f~a~~v-------~~~g~~~~~vp~g--~~~~~~~~~ 574 (612)
.|....++--|-++.+|+|.|=|+-+|. -.+---.+.+|+| ||.+.+|++
T Consensus 84 ~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 84 SFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 5677778888999999999999987753 2333346789998 566666664
No 122
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=20.28 E-value=3e+02 Score=28.76 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=57.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeCccCCCCCCcchHHHHHHHHHHH-----------HH--hHhhcCCcceeeEEE
Q 007226 36 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQARE-----------FL--YFKLYGKQCITPVAI 102 (612)
Q Consensus 36 k~avvlLaGGlGTRLG~~~pK~g~~lpv~~~~~~gks~Lql~~e~I~~lq-----------~l--a~k~~g~~~~iPl~I 102 (612)
+..+|+.|==..||| .+ + |.. -+.|+++.+..++|...-. +. +.+.+| =-++
T Consensus 3 ~~~viIPAR~~STRL-----pg-K--PLa--dI~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G-----~~av 67 (247)
T COG1212 3 KFVVIIPARLASTRL-----PG-K--PLA--DIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFG-----GEAV 67 (247)
T ss_pred ceEEEEecchhcccC-----CC-C--chh--hhCCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC-----CEEE
Confidence 467788886666776 22 1 222 2489999999999876431 00 123455 3689
Q ss_pred ecCCCCCch----HHHHHHHHHcccCCCCCCceEEEEecccceEe
Q 007226 103 MTSSAKNNH----ERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 143 (612)
Q Consensus 103 MTS~~~~T~----~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~l~ 143 (612)
|||. +| +++.+.+++.+ ++.+.+.+=.|+..|++.
T Consensus 68 mT~~---~h~SGTdR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~ 106 (247)
T COG1212 68 MTSK---DHQSGTDRLAEVVEKLG---LPDDEIIVNVQGDEPFIE 106 (247)
T ss_pred ecCC---CCCCccHHHHHHHHhcC---CCcceEEEEccCCCCCCC
Confidence 9998 55 34555555544 567788889999999986
No 123
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=20.23 E-value=1.6e+02 Score=29.62 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=39.3
Q ss_pred EeccceeEeeceeEecCeEEEecCCeEEEEeeCCCceEEEeccccccccCCCcceEEEEE--eCceEEEEEee
Q 007226 541 LHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKI--NGSHIVLELVE 611 (612)
Q Consensus 541 ~~g~~~f~a~~v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~ 611 (612)
+-|.++|..++++|.. |.+|+ -.+...|+ .|+......+.- .-+..|.+.|.+ +.+.+++++.+
T Consensus 38 ~~G~v~~~~~~i~I~~---~~~~~-s~~~~~p~-~Gi~l~is~~si--~~~~~~~~~~~~i~~~G~~~~~v~~ 103 (225)
T smart00328 38 LLGIGHYSIYSLSISR---LELPS-SQLRFQPS-KGLRLSISNLSL--RVSGDLKGSLNFIKLEGNFQLSVEG 103 (225)
T ss_pred cccEEEEEEEEEEEEe---ccCCC-CccccCCC-CceEEEEcCceE--EEEEEEEEEEEEEEeeeEEEEEEee
Confidence 3488899999998875 45565 33333333 355554443332 124788888876 66777766543
Done!