BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007227
         (612 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
 pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
 pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
 pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
 pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
 pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
 pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
 pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
 pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
 pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
 pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
 pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
          Length = 432

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 118/276 (42%), Gaps = 39/276 (14%)

Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
           G+IH   +R+L  N  Y Y++G R  N T      + F   P  G D      + GD+G 
Sbjct: 85  GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 137

Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYIS----QWDQFTAQ 352
                       Q    NTT    +   K    V  +GD+ YA+ Y +    +WD +   
Sbjct: 138 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 185

Query: 353 IEPIASTVPYMIASGNHERDWPGTGSFYGNMDSGGECGVLVENMFYVPTE---NRAKFWY 409
            E   +  P++  +GNHE +       +    +  E        ++VP E   + + FWY
Sbjct: 186 TERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWY 238

Query: 410 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYA 469
           S         +  +   +  GT QY +++  L  V R + PWLI L H  L Y+S   + 
Sbjct: 239 SIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHF 297

Query: 470 VEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 505
           +EG   E M R   +  + KYKVD+   GHVH YER
Sbjct: 298 MEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYER 329


>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Cc24201
 pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Cc24201
 pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Cc24201
 pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Cc24201
 pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Cc27209
 pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Cc27209
 pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Cc27209
 pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Cc27209
 pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Mo07123
 pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Mo07123
 pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Mo07123
 pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Maybridge Fragment Mo07123
          Length = 426

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 118/276 (42%), Gaps = 39/276 (14%)

Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
           G+IH   +R+L  N  Y Y++G R  N T      + F   P  G D      + GD+G 
Sbjct: 79  GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 131

Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYIS----QWDQFTAQ 352
                       Q    NTT    +   K    V  +GD+ YA+ Y +    +WD +   
Sbjct: 132 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 179

Query: 353 IEPIASTVPYMIASGNHERDWPGTGSFYGNMDSGGECGVLVENMFYVPTE---NRAKFWY 409
            E   +  P++  +GNHE +       +    +  E        ++VP E   + + FWY
Sbjct: 180 TERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWY 232

Query: 410 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYA 469
           S         +  +   +  GT QY +++  L  V R + PWLI L H  L Y+S   + 
Sbjct: 233 SIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHF 291

Query: 470 VEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 505
           +EG   E M R   +  + KYKVD+   GHVH YER
Sbjct: 292 MEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYER 323


>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Fluoride
 pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Fluoride
 pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Fluoride
 pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase In Complex With Fluoride
 pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase With Bound Sulfate
 pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
           Phosphatase With Bound Sulfate
          Length = 424

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 118/276 (42%), Gaps = 39/276 (14%)

Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
           G+IH   +R+L  N  Y Y++G R  N T      + F   P  G D      + GD+G 
Sbjct: 77  GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 129

Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYIS----QWDQFTAQ 352
                       Q    NTT    +   K    V  +GD+ YA+ Y +    +WD +   
Sbjct: 130 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 177

Query: 353 IEPIASTVPYMIASGNHERDWPGTGSFYGNMDSGGECGVLVENMFYVPTE---NRAKFWY 409
            E   +  P++  +GNHE +       +    +  E        ++VP E   + + FWY
Sbjct: 178 TERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWY 230

Query: 410 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYA 469
           S         +  +   +  GT QY +++  L  V R + PWLI L H  L Y+S   + 
Sbjct: 231 SIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHF 289

Query: 470 VEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 505
           +EG   E M R   +  + KYKVD+   GHVH YER
Sbjct: 290 MEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYER 321


>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
 pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
          Length = 426

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 170/431 (39%), Gaps = 59/431 (13%)

Query: 167 NAPVYPRLAQGKVWNE-MTVTWTSGYGINEAEPFVEWGPKGGDRTYSPAGTLTFGRGSMC 225
           NAP    + QG      + ++WT+ Y    A     W      +  +    +T+   +  
Sbjct: 23  NAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKYYNYT 82

Query: 226 GAPARTVGWRDPGYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDS 285
            A           +IH   +++L  +  Y Y+LG   F        ++ F   P PG D 
Sbjct: 83  SA-----------FIHHCTIKDLEYDTKYYYRLG---FGDA---KRQFWFVTPPKPGPDV 125

Query: 286 LQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYIS- 344
                + GD+G+               S  T     Q+      V  +GD+ Y+N + + 
Sbjct: 126 PYVFGLIGDIGQ------------THDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNH 173

Query: 345 ---QWDQFTAQIEPIASTVPYMIASGNHERDW-PGTGSFYGNMDSGGECGVLVENMFYVP 400
              +WD +    E   +  P++  +GNHE D+ P  G +        +  V   N +  P
Sbjct: 174 DNNRWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEY--------QPFVPFTNRYPTP 225

Query: 401 TENRAK---FWYSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAH 457
            E        WY+         +  +   + + + QY++    L  V+R + PWLI L H
Sbjct: 226 HEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVH 285

Query: 458 RVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNY---ERICPIYQNIC 514
             L Y+S  ++ +EG   E M R   +  +  YKVDI   GHVH+Y   ER+  +  NI 
Sbjct: 286 APL-YNSYEAHYMEG---EAM-RAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIV 340

Query: 515 TNKEKHYYKGSLNGTIHIXXXXXXXSL-SPFTTLQTTWSLYRD--YDHGFVKLTAFDHSN 571
             K       S    I I        L S  T  Q ++S +R+  + HG   +    H++
Sbjct: 341 NAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPSYSAFREASFGHGIFDIKNRTHAH 400

Query: 572 LLFEYKKSRDG 582
             F + +++DG
Sbjct: 401 --FSWHRNQDG 409


>pdb|3THN|A Chain A, Crystal Structure Of Mre11 Core With Manganese
          Length = 319

 Score = 33.9 bits (76), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 26/192 (13%)

Query: 325 KNIDIVFHIGDICYA--NGYISQWDQFTAQIEPIASTVPYMIASGNHERDWPGTGSFYGN 382
           + +D++   GD+ ++  N  +         ++ +  T P ++  GN   DW G    +GN
Sbjct: 42  REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNQ--DWKGL-KLFGN 98

Query: 383 MDSGGECGVLVENMFYVPTENRAKFWYSTDYGMFRFCIADTEQDWREGTEQYRF-IEHCL 441
             +     +    M + P +  AK        +  F   D  +  R+    +RF +E  L
Sbjct: 99  FVTSISSDITF-VMSFEPVDVEAK--RGQKVRILPFPYPDESEALRKNEGDFRFFLESRL 155

Query: 442 ASVDRQ---KQPWLIFLAHRVLGYSSDLSYAVEGSFAEP---MGRESL-QKLWQKYKVDI 494
             +  +   K+ + IF+ H          + VEG         GRE +  +      VD 
Sbjct: 156 NKLYEEALKKEDFAIFMGH----------FTVEGLAGYAGIEQGREIIINRALIPSVVDY 205

Query: 495 AVFGHVHNYERI 506
           A  GH+H++  I
Sbjct: 206 AALGHIHSFREI 217


>pdb|2Q8U|A Chain A, Crystal Structure Of Mre11 From Thermotoga Maritima Msb8
           (Tm1635) At 2.20 A Resolution
 pdb|2Q8U|B Chain B, Crystal Structure Of Mre11 From Thermotoga Maritima Msb8
           (Tm1635) At 2.20 A Resolution
          Length = 336

 Score = 33.5 bits (75), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 26/192 (13%)

Query: 325 KNIDIVFHIGDICYA--NGYISQWDQFTAQIEPIASTVPYMIASGNHERDWPGTGSFYGN 382
           + +D++   GD+ ++  N  +         ++    T P ++  GNH  DW G    +GN
Sbjct: 60  REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRXXRTAPVVVLPGNH--DWKGL-KLFGN 116

Query: 383 MDSGGECGVLVENMFYVPTENRAKFWYSTDYGMFRFCIADTEQDWREGTEQYRF-IEHCL 441
             +     +     F  P +  AK        +  F   D  +  R+    +RF +E  L
Sbjct: 117 FVTSISSDITFVXSFE-PVDVEAK--RGQKVRILPFPYPDESEALRKNEGDFRFFLESRL 173

Query: 442 ASVDRQ---KQPWLIFLAHRVLGYSSDLSYAVEGSFAEP---MGRESL-QKLWQKYKVDI 494
             +  +   K+ + IF  H          + VEG         GRE +  +      VD 
Sbjct: 174 NKLYEEALKKEDFAIFXGH----------FTVEGLAGYAGIEQGREIIINRALIPSVVDY 223

Query: 495 AVFGHVHNYERI 506
           A  GH+H++  I
Sbjct: 224 AALGHIHSFREI 235


>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
          Length = 379

 Score = 33.1 bits (74), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 26/192 (13%)

Query: 325 KNIDIVFHIGDICYA--NGYISQWDQFTAQIEPIASTVPYMIASGNHERDWPGTGSFYGN 382
           + +D++   GD+ ++  N  +         ++ +  T P ++  GN   DW G    +GN
Sbjct: 42  REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNQ--DWKGL-KLFGN 98

Query: 383 MDSGGECGVLVENMFYVPTENRAKFWYSTDYGMFRFCIADTEQDWREGTEQYRF-IEHCL 441
             +     +    M + P +  AK        +  F   D  +  R+    +RF +E  L
Sbjct: 99  FVTSISSDITF-VMSFEPVDVEAK--RGQKVRILPFPYPDESEALRKNEGDFRFFLESRL 155

Query: 442 ASVDRQ---KQPWLIFLAHRVLGYSSDLSYAVEGSFAEP---MGRESL-QKLWQKYKVDI 494
             +  +   K+ + IF+ H          + VEG         GRE +  +      VD 
Sbjct: 156 NKLYEEALKKEDFAIFMGH----------FTVEGLAGYAGIEQGREIIINRALIPSVVDY 205

Query: 495 AVFGHVHNYERI 506
           A  GH+H++  I
Sbjct: 206 AALGHIHSFREI 217


>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
           Clamp In Dna Double-Strand Break Repair
 pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
           Clamp In Dna Double-Strand Break Repair
          Length = 379

 Score = 32.3 bits (72), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 26/192 (13%)

Query: 325 KNIDIVFHIGDICYA--NGYISQWDQFTAQIEPIASTVPYMIASGNHERDWPGTGSFYGN 382
           + +D++   GD+ ++  N  +         ++    T P ++  GNH  DW G    +GN
Sbjct: 42  REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRXXRTAPVVVLPGNH--DWKGL-KLFGN 98

Query: 383 MDSGGECGVLVENMFYVPTENRAKFWYSTDYGMFRFCIADTEQDWREGTEQYRF-IEHCL 441
             +     +     F  P +  AK        +  F   D  +  R+    +RF +E  L
Sbjct: 99  FVTSISSDITFVXSFE-PVDVEAK--RGQKVRILPFPYPDESEALRKNEGDFRFFLESRL 155

Query: 442 ASVDRQ---KQPWLIFLAHRVLGYSSDLSYAVEGSFAEP---MGRESL-QKLWQKYKVDI 494
             +  +   K+ + IF  H          + VEG         GRE +  +      VD 
Sbjct: 156 NKLYEEALKKEDFAIFXGH----------FTVEGLAGYAGIEQGREIIINRALIPSVVDY 205

Query: 495 AVFGHVHNYERI 506
           A  GH+H++  I
Sbjct: 206 AALGHIHSFREI 217


>pdb|2YEQ|A Chain A, Structure Of Phod
 pdb|2YEQ|B Chain B, Structure Of Phod
          Length = 527

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 25/103 (24%)

Query: 248 LWPNAMYTY--KLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGKDEADGSNE 305
           L PN +Y Y  K GH L       S   + K  P PG +  Q    F    +        
Sbjct: 82  LEPNKVYYYRFKTGHEL-------SPVGKTKTLPAPGANVPQMTFAFASCQQ-------- 126

Query: 306 YNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYA---NGYISQ 345
              ++ G     + + ++   +D+VFH+GD  Y    N Y+S+
Sbjct: 127 ---YEHGYYTAYKHMAKE--KLDLVFHLGDYIYEYGPNEYVSK 164


>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
           Nlel, With A Human E2, Ubch7
 pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
           Nlel, With A Human E2, Ubch7
          Length = 616

 Score = 29.6 bits (65), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 439 HCLASVDRQKQPWLIF-LAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVF 497
           H L  +  +KQ  ++F L      YSS   +  E    E + R +   + Q YK D  VF
Sbjct: 506 HVLKDMPLRKQAEILFCLGGVFCKYSSSDMFGTEYDSPEILRRYANGLIEQAYKTDPQVF 565

Query: 498 GHVHNYERICPIYQ 511
           G V+ Y  I    Q
Sbjct: 566 GSVYYYNDILDRLQ 579


>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
 pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
 pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
 pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
 pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
 pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
          Length = 613

 Score = 29.6 bits (65), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 439 HCLASVDRQKQPWLIF-LAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVF 497
           H L  +  +KQ  ++F L      YSS   +  E    E + R +   + Q YK D  VF
Sbjct: 503 HVLKDMPLRKQAEILFCLGGVFCKYSSSDMFGTEYDSPEILRRYANGLIEQAYKTDPQVF 562

Query: 498 GHVHNYERI 506
           G V+ Y  I
Sbjct: 563 GSVYYYNDI 571


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,739,108
Number of Sequences: 62578
Number of extensions: 962979
Number of successful extensions: 1841
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1823
Number of HSP's gapped (non-prelim): 20
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)