BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007229
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 318 bits (816), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 191/622 (30%), Positives = 322/622 (51%), Gaps = 26/622 (4%)
Query: 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY 60
M+E + + P T RG +++ P D I YCNG SV + E Y EH +
Sbjct: 1 MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH 60
Query: 61 PVTVARYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVA 119
TVA+ SP+G + AS DV G+VRIW T +LK V SG + D+ W + RI A
Sbjct: 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120
Query: 120 CGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179
G+G+ + F F++D+GT+ G+ G +R + S +FKP+RPFRI + +D V +EGPP
Sbjct: 121 VGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179
Query: 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED----GHH 235
FKFK + EH+ FV+ +R++PDGS S D ++Y+G G K G F + H
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295
GS++ ++WSPDG K+ + SADK+ K+W + + +V KT T +ED +G +W
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNV----ATLKVEKTIPVGTR--IEDQQLGIIWT 293
Query: 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355
L+++S G I+ F L GH K ++ L++ +T+ S+ +G I W
Sbjct: 294 KQALVSISANGFIN-FVNPELGSIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSW 351
Query: 356 IRGVGYSSKLEKKYDARIKCLAAVEEV----IFTAGFDNKVWRVPLCEGECGDAEHIDVG 411
G S+++ D + ++ +FT +D+ + VP ++ +
Sbjct: 352 DISTGISNRVFP--DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409
Query: 412 XXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471
I + S ++++ + + + A++ D VGGQ+
Sbjct: 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 469
Query: 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL- 530
K+H+Y +SG +++E + H IT + +S + + + D +R+ I + V+ +L
Sbjct: 470 SKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATDQSRKVIPY-SVANNFELA 527
Query: 531 --NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGV 587
N+ FHTA++ C++WSP + +ATGS+D VI++ + KP+ I IK AH + V V
Sbjct: 528 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 587
Query: 588 AFMDDFNVVSSGEDACIRVWRL 609
++++ +VS+G+D+ I+ W +
Sbjct: 588 IWLNETTIVSAGQDSNIKFWNV 609
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 241 bits (615), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 185/646 (28%), Positives = 314/646 (48%), Gaps = 65/646 (10%)
Query: 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDK-----PLHVEFY 55
M+ + L E PST+R +S +P T+ I Y G+S +R LD P V+F
Sbjct: 1 MSSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT 60
Query: 56 GEHGYPVTVARYSP--NGEWIASADVSGSVRIWG-------THNGFVLKNEFKVLSGRID 106
G VT ++SP +++ S D SG V +WG +K+EF+VL+G I
Sbjct: 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 120
Query: 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166
D+ W +G R+ G+G+ +F WDSG ++G+ GHS+R+ +C K +RP R T
Sbjct: 121 DISWDFEGRRLCVVGEGR-DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 179
Query: 167 GEDFLVNFYEGPPFKFKLSHREH---SNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSG 222
G+D V FY+GPPFKF S R H +FV + FSPD G +I+V SDRK +DGKSG
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 223 EKIGEFSSEDGH--HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280
E + ++ +D G I+A+SW D +K TV AD + +VW++ + + ++ +
Sbjct: 240 EFL-KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV----TTSKCVQKWTLD 293
Query: 281 TSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ 340
+ N +I++SL G ++ + + D+ + SGH K ++ LT
Sbjct: 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV----- 347
Query: 341 QTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA-GFDNKVWRVPLCE 399
++S SYDG I++W SS + + + I L + +++ +D+ + + +
Sbjct: 348 NPLISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 402
Query: 400 GECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSL--KVMSKIDLGFTVTACA 457
E G + + +++L S ++ + L +A +
Sbjct: 403 HEFGSQPKV---------ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453
Query: 458 IAPDGSEAIVGGQNGK-LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR 516
++ + VG + G + ++ +S ++ ++ R + I SP + A+ D
Sbjct: 454 LSQN--YVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGDVMG 510
Query: 517 EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST----------MVATGSIDTCVIIYEI 566
+ +++D S+EVK + F T++IN ++W P+ +VATGS+DT + IY +
Sbjct: 511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570
Query: 567 GKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+P I NAH GV + + +VSSG DACI+ W + E
Sbjct: 571 KRPM-KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVLE 615
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 197/375 (52%), Gaps = 33/375 (8%)
Query: 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDK-----PLHVEFY 55
M+ + L E PST+R +S +P T+ I Y G+S +R LD P V+F
Sbjct: 1 MSSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT 60
Query: 56 GEHGYPVTVARYSP--NGEWIASADVSGSVRIWG-------THNGFVLKNEFKVLSGRID 106
G VT ++SP +++ S D SG V +WG +K+EF+VL+G I
Sbjct: 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 120
Query: 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166
D+ W +G R+ G+G+ +F WDSG ++G+ GHS+R+ +C K +RP R T
Sbjct: 121 DISWDFEGRRLCVVGEGR-DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTV 179
Query: 167 GEDFLVNFYEGPPFKFKLSHREH---SNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSG 222
G+D V FY+GPPFKF S R H +FV + FSPD G +I+V SDRK +DGKSG
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 223 EKIGEFSSEDGH--HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280
E + ++ +D G I+A+SW D +K TV AD + +VW++ + + ++ +
Sbjct: 240 EFL-KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV----TTSKCVQKWTLD 293
Query: 281 TSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ 340
+ N +I++SL G ++ + + D+ + SGH K ++ LT
Sbjct: 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV----- 347
Query: 341 QTILSSSYDGAIIKW 355
++S SYDG I +W
Sbjct: 348 NPLISGSYDGRIXEW 362
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST--- 550
R + I SP + A+ D + +++D S+EVK + F T++IN ++W P+
Sbjct: 488 RAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 547
Query: 551 -------MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDAC 603
+VATGS+DT + IY + +P I NAH GV + + +VSSG DAC
Sbjct: 548 EEEIEEDLVATGSLDTNIFIYSVKRPXKI-IKALNAHKDGVNNLLWETPSTLVSSGADAC 606
Query: 604 IRVWRLATE 612
I+ W + E
Sbjct: 607 IKRWNVVLE 615
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 582 GGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611
GG++ ++++D + G DA IRVW + T
Sbjct: 254 GGIFALSWLDSQKFATVGADATIRVWDVTT 283
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 131/573 (22%), Positives = 236/573 (41%), Gaps = 75/573 (13%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H V +SP+G+ IASA +V++W NG +L+ S + + +SPDG I
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQT-LTGHSSSVWGVAFSPDGQTI 72
Query: 118 VACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176
+ D K +W+ +G + GHS V F P IA+ +D V +
Sbjct: 73 ASASDDK-----TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN 126
Query: 177 GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236
+ + HS+ V + FSPDG + S S D+ +++ ++G+ + + GH
Sbjct: 127 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSS 181
Query: 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296
S++ V++SPDG+ + + S DK+ K+W G++++T +S+ + G +
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSS-----VRGVAFSP 231
Query: 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356
D S ++ + + + +GH +V+ + A + QTI S+S D + W
Sbjct: 232 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGV-AFRPDGQTIASASDDKTVKLWN 290
Query: 357 RG-------VGYSSKL-------------EKKYDARIKCLAAVEEVIFT-AGFDNKVWRV 395
R G+SS + D +K + + T G + VW V
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGV 350
Query: 396 PLCEGECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDLGFTVTA 455
D + I +G LL +L S +V
Sbjct: 351 AFSP----DGQTI----------ASASDDKTVKLWNRNGQ-LLQTLTGHSS-----SVRG 390
Query: 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN 515
A +PDG + + +++ +G L L H ++ + +SPD ASA +
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRNGQLL---QTLTGHSSSVWGVAFSPDDQTIASASDD 447
Query: 516 REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRIT 575
+ +W+R + L + H++ + +A+SP +A+ S D V ++ +T
Sbjct: 448 KTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505
Query: 576 IKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVW 607
H V GVAF D ++S +D +++W
Sbjct: 506 ---GHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 144/639 (22%), Positives = 263/639 (41%), Gaps = 109/639 (17%)
Query: 3 EVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPV 62
E H S A S + G+ I + + KT + NG+ L++ L H V
Sbjct: 13 EAHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQ--LLQTLTG---------HSSSV 60
Query: 63 TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD 122
+SP+G+ IASA +V++W NG +L+ S + + +SPDG I + D
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQT-LTGHSSSVRGVAFSPDGQTIASASD 118
Query: 123 GKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181
K +W+ +G + GHS V F P IA+ +D V + +
Sbjct: 119 DK-----TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWN-RNGQ 171
Query: 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241
+ HS+ V + FSPDG + S S D+ +++ ++G+ + + GH S+ V
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSSVRGV 227
Query: 242 SWSPDGKKVLTVSADKSAKVW----EILEDGSG------GRVIKTFASSTSNAVEDMLVG 291
++SPDG+ + + S DK+ K+W ++L+ +G G + + ++A +D V
Sbjct: 228 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287
Query: 292 CLWQNDHLITVSLGGIISIF------------SASNLDKAPLSFSGHVKNVSTLT----- 334
+N L+ G S++ SAS+ DK ++ + +++ TLT
Sbjct: 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWNRNGQHLQTLTGHSSS 346
Query: 335 ----ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA-AVEEVIFTAGFD 389
A QTI S+S D + W R G + + + ++ +A + + + D
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD 405
Query: 390 NKVWRVPLCEGECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDL 449
+K ++ G+ LL +L S
Sbjct: 406 DKTVKLWNRNGQ-----------------------------------LLQTLTGHSS--- 427
Query: 450 GFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509
+V A +PD + + +++ +G L L H ++ + +SPD
Sbjct: 428 --SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLL---QTLTGHSSSVRGVAFSPDGQTI 482
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKP 569
ASA ++ +W+R + L + H++ + +A+SP +A+ S D V ++
Sbjct: 483 ASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 540
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVW 607
+T H V+GVAF D ++S D +++W
Sbjct: 541 LLQTLT---GHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 131/563 (23%), Positives = 228/563 (40%), Gaps = 86/563 (15%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
H S + A S + G+ I + + KT + NG+ L++ L H V
Sbjct: 56 HSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQ--LLQTLTG---------HSSSVRG 103
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
+SP+G+ IASA +V++W NG +L+ S + + +SPDG I + D K
Sbjct: 104 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQT-LTGHSSSVWGVAFSPDGQTIASASDDK 161
Query: 125 GKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK 183
+W+ +G + GHS V F P IA+ +D V + +
Sbjct: 162 -----TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWN-RNGQLL 214
Query: 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243
+ HS+ V + FSPDG + S S D+ +++ ++G+ + + GH S+ V++
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSSVNGVAF 270
Query: 244 SPDGKKVLTVSADKSAKVW----EILEDGSG------GRVIKTFASSTSNAVEDMLVGCL 293
PDG+ + + S DK+ K+W ++L+ +G G + ++A +D V L
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV-KL 329
Query: 294 WQND--HLITV-----SLGGII------SIFSASNLDKAPL---------SFSGHVKNVS 331
W + HL T+ S+ G+ +I SAS+ L + +GH +V
Sbjct: 330 WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 389
Query: 332 TLTALKISQQTILSSSYDGAIIKWIRG-------VGYSSKLEKKYDARIKCLAAVEEVIF 384
+ A QTI S+S D + W R G+SS + + ++ I
Sbjct: 390 GV-AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV------AFSPDDQTIA 442
Query: 385 TAGFDN--KVWRV--PLCEGECGDAEHID-VGXXXXXXXXXXXXXXXXXXXTESGVILLD 439
+A D K+W L + G + + V LL
Sbjct: 443 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 502
Query: 440 SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITV 499
+L S +V A +PDG + + +++ +G L L H ++
Sbjct: 503 TLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL---QTLTGHSSSVWG 554
Query: 500 IQYSPDVSMFASADGNREAIVWD 522
+ +SPD ASA ++ +W+
Sbjct: 555 VAFSPDGQTIASASSDKTVKLWN 577
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 486 EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAW 545
E LE H ++ + +SPD ASA ++ +W+R + L + H++ + +A+
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAF 65
Query: 546 SPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACI 604
SP +A+ S D V ++ +T H V GVAF D ++S +D +
Sbjct: 66 SPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 605 RVW 607
++W
Sbjct: 123 KLW 125
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 83
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 84 NLLVSASDDK-----TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 137
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 198 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 236
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 109
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 122
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 123 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 606 VWRLAT 611
+W A+
Sbjct: 181 IWDTAS 186
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 606 VWRLAT 611
+W + T
Sbjct: 139 IWDVKT 144
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 73
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 74 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 127
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 187
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 188 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 226
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 60
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 99
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 54 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 112
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 113 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 606 VWRLAT 611
+W A+
Sbjct: 171 IWDTAS 176
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 606 VWRLAT 611
+W + T
Sbjct: 129 IWDVKT 134
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 162
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 163 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 265
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 77
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 78 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 131
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 192 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 230
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 64
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 103
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 116
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 117 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 606 VWRLAT 611
+W A+
Sbjct: 175 IWDTAS 180
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 74
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 606 VWRLAT 611
+W + T
Sbjct: 133 IWDVKT 138
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 166
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 78
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 79 NLLVSASDDK-----TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 132
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 192
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 193 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 231
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 65
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 104
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 59 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 117
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 118 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 606 VWRLAT 611
+W A+
Sbjct: 176 IWDTAS 181
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 75
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 606 VWRLAT 611
+W + T
Sbjct: 134 IWDVKT 139
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 167
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 168 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 270
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 80
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 81 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 195 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 233
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 106
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 119
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 120 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 606 VWRLAT 611
+W A+
Sbjct: 178 IWDTAS 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 77
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 606 VWRLAT 611
+W + T
Sbjct: 136 IWDVKT 141
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 169
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 80
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 81 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 195 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 233
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 106
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 119
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 120 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 606 VWRLAT 611
+W A+
Sbjct: 178 IWDTAS 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 77
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 606 VWRLAT 611
+W + T
Sbjct: 136 IWDVKT 141
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 169
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 94
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 95 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 148
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 208
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 209 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 247
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 81
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 120
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 75 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 133
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 134 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 606 VWRLAT 611
+W A+
Sbjct: 192 IWDTAS 197
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 91
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 606 VWRLAT 611
+W + T
Sbjct: 150 IWDVKT 155
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 183
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 184 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 286
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 77
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 78 NLLVSASDDK-----TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 131
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 192 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 230
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 64
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 103
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 116
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 117 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 606 VWRLAT 611
+W A+
Sbjct: 175 IWDTAS 180
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 74
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 606 VWRLAT 611
+W + T
Sbjct: 133 IWDVKT 138
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 166
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 82
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 83 NLLVSASDDK-----TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 136
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 196
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 197 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 235
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 69
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 108
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 63 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 121
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 122 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 606 VWRLAT 611
+W A+
Sbjct: 180 IWDTAS 185
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 79
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 606 VWRLAT 611
+W + T
Sbjct: 138 IWDVKT 143
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 171
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 172 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 274
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 99
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 100 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 153
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 214 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 252
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 86
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 125
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 138
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 139 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 606 VWRLAT 611
+W A+
Sbjct: 197 IWDTAS 202
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 96
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 606 VWRLAT 611
+W + T
Sbjct: 155 IWDVKT 160
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 188
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 76
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 77 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 130
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 190
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 191 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 229
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 63
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 102
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 57 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 115
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 116 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 606 VWRLAT 611
+W A+
Sbjct: 174 IWDTAS 179
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 73
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 606 VWRLAT 611
+W + T
Sbjct: 132 IWDVKT 137
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 165
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 166 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 268
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 83
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 84 NLLVSASDDK-----TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 137
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 198 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 236
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 109
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 122
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 123 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 606 VWRLAT 611
+W A+
Sbjct: 181 IWDTAS 186
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 606 VWRLAT 611
+W + T
Sbjct: 139 IWDVKT 144
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 101
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 102 NLLVSASDDK-----TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 155
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 215
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 216 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 254
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 88
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 127
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 140
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 141 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 606 VWRLAT 611
+W A+
Sbjct: 199 IWDTAS 204
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 98
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 606 VWRLAT 611
+W + T
Sbjct: 157 IWDVKT 162
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 190
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 191 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 250
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 293
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 83
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 84 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 137
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 198 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 236
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 109
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 122
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 123 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 606 VWRLAT 611
+W A+
Sbjct: 181 IWDTAS 186
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 606 VWRLAT 611
+W + T
Sbjct: 139 IWDVKT 144
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+A++ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 80
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 81 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ K + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 195 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 233
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + K + H+ V+ ++FSP+G L + S+D+ I YDGK + I GH
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 106
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 119
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 120 PQSNLIVSGSFDESVRIWDV-KTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 606 VWRLAT 611
+W A+
Sbjct: 178 IWDTAS 183
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
+ L H A++ +++SP+ A++ ++ +W + + + H I+ +AWS
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 77
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIR 605
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 606 VWRLAT 611
+W + T
Sbjct: 136 IWDVKT 141
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
V C P + + G + + I+ + +G L L H ++ + ++ D S+ S
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 169
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKP 569
+ + +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 80
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 81 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D + K+W D S G+ +KT+
Sbjct: 195 --NPPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTY 233
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 106
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 119
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 120 PQSNLIVSGSFDESVRIWDV-KTGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 606 VWRLAT 611
+W A+
Sbjct: 178 IWDTAS 183
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP 547
L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSS 78
Query: 548 SSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIRV 606
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 607 WRLAT 611
W + T
Sbjct: 137 WDVKT 141
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 4/162 (2%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
V C P + + G + + I+ + + L H ++ + ++ D S+ S+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK--TLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 513 DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKPA 570
+ +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 21/225 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR---IDDLQWSPDG 114
H V+ ++SPNGEW+AS+ ++IWG ++G K E K +SG I D+ WS D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFE-KTISGHKLGISDVAWSSDS 80
Query: 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+V+ D K +WD SG + GHS V C F P I + D V
Sbjct: 81 NLLVSASDDKTLK-----IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
++ + HS+ V+ + F+ DGS ++S S D I+D SG+ + +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ + V +SP+GK +L + D K+W D S G+ +KT+
Sbjct: 195 --NPPVSFVKFSPNGKYILAATLDNDLKLW----DYSKGKCLKTY 233
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI---YDGKSGEKIGEFSSEDGH 234
P + + H+ V+ ++FSP+G L S S+D+ I YDGK + I GH
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
I V+WS D +++ S DK+ K+W++ S G+ +KT
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCLKTL 106
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546
E + H+ I+ + +S D ++ SA ++ +WD VS L + H+ + C ++
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNFN 119
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIR 605
P S ++ +GS D V I+++ K T+ AH V V F D + +VSS D R
Sbjct: 120 PQSNLIVSGSFDESVRIWDV-KTGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 606 VWRLAT 611
+W A+
Sbjct: 178 IWDTAS 183
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP 547
L H A++ +++SP+ AS+ ++ +W + + + H I+ +AWS
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSS 78
Query: 548 SSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIRV 606
S ++ + S D + I+++ + T+K H V+ F N++ SG D +R+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLK-TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 607 WRLAT 611
W + T
Sbjct: 137 WDVKT 141
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 4/162 (2%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
V C P + + G + + I+ + + L H ++ + ++ D S+ S+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK--TLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 513 DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII--YEIGKPA 570
+ +WD S + + ++ + +SP+ + ++D + + Y GK
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL 230
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLATE 612
+ KN + +VS ED + +W L T+
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 128/571 (22%), Positives = 222/571 (38%), Gaps = 104/571 (18%)
Query: 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169
+S DG RI +CG K ++ F ++G + + H VL C F F IATC D
Sbjct: 629 FSEDGQRIASCGADKT---LQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF-IATCSVD 684
Query: 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV--SSDRKGLIYDGKSGEKIGE 227
V + + ++ EHS VNC F+ L+ SSD ++D E
Sbjct: 685 KKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNT 744
Query: 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV-IKTFASSTSNAVE 286
GH S+ +SPD K + + SAD + K+W+ + +K F + + E
Sbjct: 745 MF---GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQE 801
Query: 287 DMLV---GCLWQND-HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT 342
DM V C W D I V+ I +F ++ + L H + ST+ S Q
Sbjct: 802 DMEVIVKCCSWSADGARIMVAAKNKIFLF---DIHTSGLLGEIHTGHHSTIQYCDFSPQN 858
Query: 343 ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFT-------AGFDNKVWRV 395
L+ A+ ++ + + K D R L+ V V+F+ D++ R+
Sbjct: 859 HLAVV---ALSQYCVELWNTDSRSKVADCRGH-LSWVHGVMFSPDGSSFLTSSDDQTIRL 914
Query: 396 PLCEGECGDA-----EHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDLG 450
+ C ++ + +DV E V+ +D ++ + I+ G
Sbjct: 915 WETKKVCKNSAVMLKQEVDV----------------VFQENEVMVLAVDHIRRLQLIN-G 957
Query: 451 FT----------VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVI 500
T V+ C ++P G +NG + I + N + + +H+ + I
Sbjct: 958 RTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRF--QHKKTVWHI 1015
Query: 501 QYSPDVSMFASADGNREAIVWD---------RVSKEVKLNNMLFHTARINCLAWSPSST- 550
Q++ D S+ + E VW+ R +E + L +R+ L+WS T
Sbjct: 1016 QFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRL--LSWSFDGTV 1073
Query: 551 --------------MVATGSIDTCVIIYEIGKPASSRI--TIK-------------NAHL 581
+ G++ +C I ++ K +S+ T K H
Sbjct: 1074 KVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHN 1133
Query: 582 GGVYGVAFMDDFNVVSSGED-ACIRVWRLAT 611
G V AF D ++++G+D IR+W ++
Sbjct: 1134 GCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIW-----GTHNGFVLKNEFKVLSGRIDDLQ--- 109
H V R+SP+ + +AS G++++W +K F L +D++
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV 807
Query: 110 ----WSPDGLRIVACGDGKGKSFVRAFMWDSGTT--VGDFD-GHSRRVLSCEFKPTRPFR 162
WS DG RI+ K F++D T+ +G+ GH + C+F P
Sbjct: 808 KCCSWSADGARIMVAAKNK------IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLA 861
Query: 163 IATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK 220
+ + + V + R H ++V+ + FSPDGS ++ S D+ +++ K
Sbjct: 862 VVALSQ-YCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242
+L R H++ V FS DG ++ S +D+ ++ ++GEK+ E + H + +
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA---HEDEVLCCA 670
Query: 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+S D + + T S DK K+W + G ++ T+
Sbjct: 671 FSTDDRFIATCSVDKKVKIW----NSMTGELVHTY 701
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL-------KNEFKVL 101
PLH E G +G V + +S + +A+ D +G +RIW NG +L +
Sbjct: 1125 PLH-ELRGHNG-CVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATH 1182
Query: 102 SGRIDDLQWSPDGLRIVACG 121
G + DL +SPDG +++ G
Sbjct: 1183 GGWVTDLCFSPDGKMLISAG 1202
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 110/296 (37%), Gaps = 75/296 (25%)
Query: 37 NGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96
NGR+ I YL + V+ SP+ ++IA D +G++ I N + ++
Sbjct: 956 NGRTGQIDYLTEA-----------QVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQS 1004
Query: 97 EF---------------KVLSGRIDDLQ-----WSPDGLRIVACGDGKGKSF-----VRA 131
F K L DD + W D + K F R
Sbjct: 1005 RFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRL 1064
Query: 132 FMWD-----------SGTTVGDFDGHSRRVLSCE-------FKPTRPFRIATCGE-DFLV 172
W +G DF H VLSC+ F T + A D L+
Sbjct: 1065 LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLL 1124
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS--S 230
+E R H+ V C FS D + L + + + I++ +GE + + S
Sbjct: 1125 PLHEL---------RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLS 1175
Query: 231 EDG---HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283
E+G H G + + +SPDGK + +SA K W ++ G +TF ++ +N
Sbjct: 1176 EEGAATHGGWVTDLCFSPDGK--MLISAGGYIKWWNVV----TGESSQTFYTNGTN 1225
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 471 NGKLHIYSISGNTLTE--EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528
NG L++ I+ +T +V+ H A+ +S D AS ++ V+ + E
Sbjct: 596 NGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE- 654
Query: 529 KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564
KL + H + C A+S +AT S+D V I+
Sbjct: 655 KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/499 (21%), Positives = 191/499 (38%), Gaps = 93/499 (18%)
Query: 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169
+S DG RI +CG K ++ F ++G + D H VL C F + IATC D
Sbjct: 623 FSQDGQRIASCGADKT---LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSAD 678
Query: 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV--SSDRKGLIYDGKSGEKIGE 227
V ++ K ++ EHS VNC F+ + L+ S+D ++D E
Sbjct: 679 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 738
Query: 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV-IKTFASSTSNAVE 286
GH S+ +SPD + + + SAD + ++W++ + +K F S+ + E
Sbjct: 739 MF---GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795
Query: 287 DMLV---GCLWQND-HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST--------LT 334
D+ V C W D I V+ + +F +GH + L
Sbjct: 796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855
Query: 335 ALKISQQTILSSSYDGAI--------IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386
+ +SQ + + D + + W+ GV +S + F
Sbjct: 856 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP----------------DGSSFLT 899
Query: 387 GFDNKVWRVPLCEGECGDA-----EHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSL 441
D++ RV + C ++ + IDV E+ V+ +D++
Sbjct: 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDV----------------VFQENETMVLAVDNI 943
Query: 442 KVMS-------KIDL--GFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK 492
+ + +ID V+ C ++P G ++G + I + N + V
Sbjct: 944 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--G 1001
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWD---------RVSKEVKLNNMLFHTARINCL 543
H+ A+ IQ++ D S+ + VW+ + +E + L +R+ L
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL--L 1059
Query: 544 AWSPSSTM----VATGSID 558
+WS T+ V TG I+
Sbjct: 1060 SWSFDGTVKVWNVITGRIE 1078
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 34/266 (12%)
Query: 12 CAPST-ERGRGILISGNPKTDT----ILYCNGRSV--LIRYLDKPLHVEFYGEHGYPVTV 64
C P T E R + + DT + + N +++ L R + +P H V
Sbjct: 569 CEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRP--------HTDAVYH 620
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
A +S +G+ IAS +++++ G L + K + +S D I C K
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLL-DIKAHEDEVLCCAFSSDDSYIATCSADK 679
Query: 125 GKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEF-KPTRPFRIATCGEDFLVNFYEGPPFK 181
+ +WDS T V +D HS +V C F + +AT DF + ++ +
Sbjct: 680 -----KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK-----IGEF--SSEDGH 234
+ + H+N VN RFSPD L S S+D ++D +S + + F SSED
Sbjct: 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794
Query: 235 HGS---IYAVSWSPDGKKVLTVSADK 257
+ SWS DG K++ + +K
Sbjct: 795 EDVEVIVKCCSWSADGDKIIVAAKNK 820
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 104/482 (21%), Positives = 171/482 (35%), Gaps = 50/482 (10%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNG-----FVLKNEFKVLSGRIDDLQ--- 109
H V R+SP+ E +AS G++R+W + +K F +D++
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801
Query: 110 ----WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIAT 165
WS DG +I+ K F + SG GH + C+F P +
Sbjct: 802 KCCSWSADGDKIIVAAKNKVLLFD---IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
Query: 166 CGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225
+ + V + R H ++V+ + FSPDGS ++ S D+ +++ K K
Sbjct: 859 LSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285
+ V + + VL V + + L G G++ + +
Sbjct: 918 SAIVLKQE-----IDVVFQENETMVLAVDNIRGLQ----LIAGKTGQI---------DYL 959
Query: 286 EDMLVGCLWQNDHLITVSLG---GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT 342
+ V C + HL V+ G G I I N ++ S GH K V + +T
Sbjct: 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHI-QFTADGKT 1017
Query: 343 ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN--KVWRVPLCEG 400
++SSS D I W G L+ + + + + FD KVW V
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077
Query: 401 ECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDLGFTVTAC-AIA 459
E H T + + D L + ++ C A +
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKT-AKIWSFDLLSPLHELKGHNGCVRCSAFS 1136
Query: 460 PDGSEAIVGGQNGKLHIYSISGNTLTE-------EMVLEKHRGAITVIQYSPDVSMFASA 512
DG G NG++ I+++S L E H G +T + +SPD SA
Sbjct: 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Query: 513 DG 514
G
Sbjct: 1197 GG 1198
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 94/479 (19%), Positives = 178/479 (37%), Gaps = 102/479 (21%)
Query: 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242
+L R H++ V FS DG ++ S +D+ ++ ++GEK+ + + H + +
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA---HEDEVLCCA 664
Query: 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN--DHLI 300
+S D + T SADK K+W D + G+++ T+ + + + C + N +HL+
Sbjct: 665 FSSDDSYIATCSADKKVKIW----DSATGKLVHTYDEHS-----EQVNCCHFTNKSNHLL 715
Query: 301 TVSLGGIISIFSASNLDKAPL--SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW-IR 357
++ G +L++ + GH +V+ + + S S DG + W +R
Sbjct: 716 -LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH-CRFSPDDELLASCSADGTLRLWDVR 773
Query: 358 GVGYSSKLEKKYDARIKCLAAVEEVIFTAGFD--NKVWRVPLCEGECGDAEHIDVGXXXX 415
+ K F + D V + C D + I V
Sbjct: 774 SANERKSINVKR-------------FFLSSEDPPEDVEVIVKCCSWSADGDKIIVA---- 816
Query: 416 XXXXXXXXXXXXXXXTESGVILLD--SLKVMSKIDLGF--TVTACAIAPDGSEAIVGGQN 471
++ V+L D + ++++I G T+ C +P A++
Sbjct: 817 ---------------AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 861
Query: 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531
+ +++I + H + + +SPD S F +A ++ VW+ +K+V N
Sbjct: 862 YCVELWNIDSRLKVADC--RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE--TKKVCKN 917
Query: 532 NMLFHTARIN--------------------------------------CLAWSPSSTMVA 553
+ + I+ C SP VA
Sbjct: 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977
Query: 554 TGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDD-FNVVSSGEDACIRVWRLAT 611
G D + I E+ P + + H V + F D ++SS ED+ I+VW T
Sbjct: 978 FGDEDGAIKIIEL--PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 106/557 (19%), Positives = 186/557 (33%), Gaps = 149/557 (26%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H V +S + +IA+ V+IW + G L + + S +++ ++ +
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHL 714
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177
+ G F++ + + GH+ V C F P +A+C D + ++
Sbjct: 715 LL-ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDV 772
Query: 178 PPF---------KFKLSHREHSN----FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224
+F LS + V C +S DG K+I V++ K L++D +
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII-VAAKNKVLLFDIHTSGL 831
Query: 225 IGEFSSEDGHHGSI------------------------------------------YAVS 242
+ E + GHH +I + V
Sbjct: 832 LAEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889
Query: 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVI------------KTFASSTSNA------ 284
+SPDG LT S D++ +VWE + ++ +T + N
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 285 ---------VEDMLVGCLWQNDHLITVSLG---GIISIFSASNLDKAPLSFSGHVKNVST 332
+ + V C + HL V+ G G I I N ++ S GH K V
Sbjct: 950 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRH 1008
Query: 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN-- 390
+ +T++SSS D I W G L+ + + + + FD
Sbjct: 1009 IQ-FTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV 1067
Query: 391 KVWRVPLCEGECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDLG 450
KVW V + +I+
Sbjct: 1068 KVWNV-----------------------------------------------ITGRIERD 1080
Query: 451 FT-----VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD 505
FT V +CAI+ D ++ + I+S + L+ L+ H G + +S D
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF--DLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 506 VSMFASADGNREAIVWD 522
+ A+ D N E +W+
Sbjct: 1139 GILLATGDDNGEIRIWN 1155
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 464 EAIVGGQNGKLHIYSISGNTLTE--EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521
+A G G+L++ I+ T+ +V+ H A+ +S D AS ++ V+
Sbjct: 583 QAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 642
Query: 522 DRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565
+ E KL ++ H + C A+S + +AT S D V I++
Sbjct: 643 KAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV-------- 100
PLH E G +G V + +S +G +A+ D +G +RIW +G +L + +
Sbjct: 1119 PLH-ELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTAT 1176
Query: 101 LSGRIDDLQWSPDGLRIVACG 121
G + D+ +SPD +V+ G
Sbjct: 1177 HGGWVTDVCFSPDSKTLVSAG 1197
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVW--DRVSKEVKLNNMLFHTARINCLAWSPSST 550
H+G + S D + F+S ++ A +W D +S L+ + H + C A+S
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS---PLHELKGHNGCVRCSAFSLDGI 1140
Query: 551 MVATGSIDTCVIIYEIGK----PASSRITIKN---AHLGGVYGVAFM-DDFNVVSSGEDA 602
++ATG + + I+ + + + I+++ H G V V F D +VS+G
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1198
Query: 603 CIRVWRLAT 611
++ W +AT
Sbjct: 1199 YLKWWNVAT 1207
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/499 (21%), Positives = 191/499 (38%), Gaps = 93/499 (18%)
Query: 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169
+S DG RI +CG K ++ F ++G + D H VL C F + IATC D
Sbjct: 630 FSQDGQRIASCGADKT---LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSAD 685
Query: 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV--SSDRKGLIYDGKSGEKIGE 227
V ++ K ++ EHS VNC F+ + L+ S+D ++D E
Sbjct: 686 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 745
Query: 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV-IKTFASSTSNAVE 286
GH S+ +SPD + + + SAD + ++W++ + +K F S+ + E
Sbjct: 746 MF---GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 802
Query: 287 DMLV---GCLWQND-HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST--------LT 334
D+ V C W D I V+ + +F +GH + L
Sbjct: 803 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 862
Query: 335 ALKISQQTILSSSYDGAI--------IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386
+ +SQ + + D + + W+ GV +S + F
Sbjct: 863 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP----------------DGSSFLT 906
Query: 387 GFDNKVWRVPLCEGECGDA-----EHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSL 441
D++ RV + C ++ + IDV E+ V+ +D++
Sbjct: 907 ASDDQTIRVWETKKVCKNSAIVLKQEIDV----------------VFQENETMVLAVDNI 950
Query: 442 KVMS-------KIDL--GFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK 492
+ + +ID V+ C ++P G ++G + I + N + V
Sbjct: 951 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--G 1008
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWD---------RVSKEVKLNNMLFHTARINCL 543
H+ A+ IQ++ D S+ + VW+ + +E + L +R+ L
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL--L 1066
Query: 544 AWSPSSTM----VATGSID 558
+WS T+ V TG I+
Sbjct: 1067 SWSFDGTVKVWNVITGRIE 1085
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 34/266 (12%)
Query: 12 CAPST-ERGRGILISGNPKTDT----ILYCNGRSV--LIRYLDKPLHVEFYGEHGYPVTV 64
C P T E R + + DT + + N +++ L R + +P H V
Sbjct: 576 CEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRP--------HTDAVYH 627
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
A +S +G+ IAS +++++ G L + K + +S D I C K
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLL-DIKAHEDEVLCCAFSSDDSYIATCSADK 686
Query: 125 GKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEF-KPTRPFRIATCGEDFLVNFYEGPPFK 181
+ +WDS T V +D HS +V C F + +AT DF + ++ +
Sbjct: 687 -----KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK-----IGEF--SSEDGH 234
+ + H+N VN RFSPD L S S+D ++D +S + + F SSED
Sbjct: 742 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 801
Query: 235 HGS---IYAVSWSPDGKKVLTVSADK 257
+ SWS DG K++ + +K
Sbjct: 802 EDVEVIVKCCSWSADGDKIIVAAKNK 827
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 105/483 (21%), Positives = 175/483 (36%), Gaps = 52/483 (10%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNG-----FVLKNEFKVLSGRIDDLQ--- 109
H V R+SP+ E +AS G++R+W + +K F +D++
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 808
Query: 110 ----WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIAT 165
WS DG +I+ K F + SG GH + C+F P +
Sbjct: 809 KCCSWSADGDKIIVAAKNKVLLFD---IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865
Query: 166 CGEDFLVNFYEGPPFKFKLSH-REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224
+ + V + + K++ R H ++V+ + FSPDGS ++ S D+ +++ K K
Sbjct: 866 LSQ-YCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 923
Query: 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284
+ V + + VL V + + L G G++ +
Sbjct: 924 NSAIVLKQE-----IDVVFQENETMVLAVDNIRGLQ----LIAGKTGQI---------DY 965
Query: 285 VEDMLVGCLWQNDHLITVSLG---GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341
+ + V C + HL V+ G G I I N ++ S GH K V + +
Sbjct: 966 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHI-QFTADGK 1023
Query: 342 TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN--KVWRVPLCE 399
T++SSS D I W G L+ + + + + FD KVW V
Sbjct: 1024 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR 1083
Query: 400 GECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDLGFTVTAC-AI 458
E H T + + D L + ++ C A
Sbjct: 1084 IERDFTCHQGTVLSCAISSDATKFSSTSADKT-AKIWSFDLLSPLHELKGHNGCVRCSAF 1142
Query: 459 APDGSEAIVGGQNGKLHIYSISGNTLTE-------EMVLEKHRGAITVIQYSPDVSMFAS 511
+ DG G NG++ I+++S L E H G +T + +SPD S
Sbjct: 1143 SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS 1202
Query: 512 ADG 514
A G
Sbjct: 1203 AGG 1205
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 94/479 (19%), Positives = 178/479 (37%), Gaps = 102/479 (21%)
Query: 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242
+L R H++ V FS DG ++ S +D+ ++ ++GEK+ + + H + +
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA---HEDEVLCCA 671
Query: 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN--DHLI 300
+S D + T SADK K+W D + G+++ T+ + + + C + N +HL+
Sbjct: 672 FSSDDSYIATCSADKKVKIW----DSATGKLVHTYDEHS-----EQVNCCHFTNKSNHLL 722
Query: 301 TVSLGGIISIFSASNLDKAPL--SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW-IR 357
++ G +L++ + GH +V+ + + S S DG + W +R
Sbjct: 723 -LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH-CRFSPDDELLASCSADGTLRLWDVR 780
Query: 358 GVGYSSKLEKKYDARIKCLAAVEEVIFTAGFD--NKVWRVPLCEGECGDAEHIDVGXXXX 415
+ K F + D V + C D + I V
Sbjct: 781 SANERKSINVKR-------------FFLSSEDPPEDVEVIVKCCSWSADGDKIIVA---- 823
Query: 416 XXXXXXXXXXXXXXXTESGVILLD--SLKVMSKIDLGF--TVTACAIAPDGSEAIVGGQN 471
++ V+L D + ++++I G T+ C +P A++
Sbjct: 824 ---------------AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 868
Query: 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531
+ +++I + H + + +SPD S F +A ++ VW+ +K+V N
Sbjct: 869 YCVELWNIDSRLKVADC--RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE--TKKVCKN 924
Query: 532 NMLFHTARIN--------------------------------------CLAWSPSSTMVA 553
+ + I+ C SP VA
Sbjct: 925 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 984
Query: 554 TGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDD-FNVVSSGEDACIRVWRLAT 611
G D + I E+ P + + H V + F D ++SS ED+ I+VW T
Sbjct: 985 FGDEDGAIKIIEL--PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 106/557 (19%), Positives = 186/557 (33%), Gaps = 149/557 (26%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H V +S + +IA+ V+IW + G L + + S +++ ++ +
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHL 721
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177
+ G F++ + + GH+ V C F P +A+C D + ++
Sbjct: 722 LL-ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDV 779
Query: 178 PPF---------KFKLSHREHSN----FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224
+F LS + V C +S DG K+I V++ K L++D +
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII-VAAKNKVLLFDIHTSGL 838
Query: 225 IGEFSSEDGHHGSI------------------------------------------YAVS 242
+ E + GHH +I + V
Sbjct: 839 LAEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 896
Query: 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVI------------KTFASSTSNA------ 284
+SPDG LT S D++ +VWE + ++ +T + N
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 956
Query: 285 ---------VEDMLVGCLWQNDHLITVSLG---GIISIFSASNLDKAPLSFSGHVKNVST 332
+ + V C + HL V+ G G I I N ++ S GH K V
Sbjct: 957 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRH 1015
Query: 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN-- 390
+ +T++SSS D I W G L+ + + + + FD
Sbjct: 1016 IQ-FTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV 1074
Query: 391 KVWRVPLCEGECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDLG 450
KVW V + +I+
Sbjct: 1075 KVWNV-----------------------------------------------ITGRIERD 1087
Query: 451 FT-----VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD 505
FT V +CAI+ D ++ + I+S + L+ L+ H G + +S D
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF--DLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 506 VSMFASADGNREAIVWD 522
+ A+ D N E +W+
Sbjct: 1146 GILLATGDDNGEIRIWN 1162
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 464 EAIVGGQNGKLHIYSISGNTLTE--EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521
+A G G+L++ I+ T+ +V+ H A+ +S D AS ++ V+
Sbjct: 590 QAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 649
Query: 522 DRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565
+ E KL ++ H + C A+S + +AT S D V I++
Sbjct: 650 KAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV-------- 100
PLH E G +G V + +S +G +A+ D +G +RIW +G +L + +
Sbjct: 1126 PLH-ELKGHNGC-VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTAT 1183
Query: 101 LSGRIDDLQWSPDGLRIVACG 121
G + D+ +SPD +V+ G
Sbjct: 1184 HGGWVTDVCFSPDSKTLVSAG 1204
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVW--DRVSKEVKLNNMLFHTARINCLAWSPSST 550
H+G + S D + F+S ++ A +W D +S L+ + H + C A+S
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS---PLHELKGHNGCVRCSAFSLDGI 1147
Query: 551 MVATGSIDTCVIIYEIGK----PASSRITIKN---AHLGGVYGVAFM-DDFNVVSSGEDA 602
++ATG + + I+ + + + I+++ H G V V F D +VS+G
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1205
Query: 603 CIRVWRLAT 611
++ W +AT
Sbjct: 1206 YLKWWNVAT 1214
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 21/206 (10%)
Query: 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKN----EFKVLSGR-IDDLQWSPDGLRIVACG 121
+ P W+ + SG V IW +++ E V +G+ I W IV
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWI-----IVGSD 75
Query: 122 DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PF 180
D + +R F +++G V DF+ H + S PT+P+ + + +D V + +
Sbjct: 76 DFR----IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNW 130
Query: 181 KFKLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239
+ + H +FV C+ F+P D S S DR ++ G+ F+ G +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVN 188
Query: 240 AVSWS--PDGKKVLTVSADKSAKVWE 263
V + PD ++T S D + K+W+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFAS 511
+ + A+ P + G + + +++ N E+ E H + + ++P D S FAS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-TFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP--SSTMVATGSIDTCVIIYEIGKP 569
+R VW +N + + P + T S D + I++
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY--Q 216
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
S + H+ V F ++ SG ED +++W +T
Sbjct: 217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 143 FDGHSRRVLSCEFKPTRPFRIATC--GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200
F S RV +F PT P+ + T G + N+ + S + V +F
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIA 65
Query: 201 DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260
+ +I S D + +++ +GEK+ +F + H I +++ P VL+ S D + K
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 261 VW 262
+W
Sbjct: 123 LW 124
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 19/213 (8%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H + V+ S +G++ S G++R+W G + F + + + +S D +I
Sbjct: 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR-RFVGHTKDVLSVAFSSDNRQI 143
Query: 118 VACGDGKGKSFVRAFMWDS----GTTVGDFDGHSRRVLSCEFKP--TRPFRIATCGEDFL 171
V+ G ++ +W++ TV D + HS V F P + P I +CG D L
Sbjct: 144 VS---GSRDKTIK--LWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPI-IVSCGWDKL 196
Query: 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE 231
V + K K +H H+ ++N + SPDGS S D + +++D G+ +
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
D I A+ +SP+ + L + S K+W++
Sbjct: 257 D----IINALCFSPN-RYWLCAATGPSIKIWDL 284
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 123 GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE------ 176
G + ++ M + T G GH+ V P P I + D + ++
Sbjct: 14 GTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET 73
Query: 177 --GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234
G P + + R HS+FV+ + S DG +S S D ++D +G F GH
Sbjct: 74 NYGIPQR---ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GH 127
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEIL-------EDGSGGRVIKT--FASSTSNAV 285
+ +V++S D +++++ S DK+ K+W L +D S + F+ ++SN +
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 286 EDMLVGCLWQNDHLITV 302
+V C W D L+ V
Sbjct: 188 ---IVSCGW--DKLVKV 199
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/371 (17%), Positives = 140/371 (37%), Gaps = 68/371 (18%)
Query: 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGG 271
+ L + E++ + GH+G + ++ +P +L+ S DK+ +W++ D +
Sbjct: 16 ENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY 75
Query: 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331
+ + S+ V D+++ ++ S G + ++ + F GH K+V
Sbjct: 76 GIPQRALRGHSHFVSDVVISS--DGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVL 132
Query: 332 TLTALKISQQTILSSSYDGAIIKW-IRGVGYSSKLEKKYDARIKCLA----AVEEVIFTA 386
++ A + I+S S D I W GV + ++ + + C+ + +I +
Sbjct: 133 SV-AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191
Query: 387 GFDN--KVWRVPLCEGECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVM 444
G+D KVW + C+ + H
Sbjct: 192 GWDKLVKVWNLANCKLKTNHIGHT------------------------------------ 215
Query: 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKL---------HIYSISGNTLTEEMVLEKHRG 495
G+ + ++PDGS GG++G+ H+Y++ G + + +R
Sbjct: 216 -----GY-LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY 269
Query: 496 AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555
+ P + ++ D + IV D + +EV + + LAWS + G
Sbjct: 270 WLCAAT-GPSIKIW---DLEGKIIV-DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324
Query: 556 SIDTCVIIYEI 566
D V ++++
Sbjct: 325 YTDNLVRVWQV 335
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS--MFA 510
V + A + D + + G ++ + +++ G + E H ++ +++SP+ S +
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568
S ++ VW+ + ++K N+ + HT +N + SP ++ A+G D +++++ +
Sbjct: 190 SCGWDKLVKVWNLANCKLKTNH-IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 453 VTACAIAPDGSEAIV--GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA 510
V+ +P+ S I+ G + + +++++ L + H G + + SPD S+ A
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCA 231
Query: 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV--ATG------SIDTCVI 562
S + +A++WD E K L IN L +SP+ + ATG ++ +I
Sbjct: 232 SGGKDGQAMLWDL--NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 289
Query: 563 IYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLA 610
+ E+ + S T A +A+ D + +G D +RVW++
Sbjct: 290 VDELKQEVIS--TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 19/213 (8%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H + V+ S +G++ S G++R+W G + F + + + +S D +I
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR-RFVGHTKDVLSVAFSSDNRQI 120
Query: 118 VACGDGKGKSFVRAFMWDS----GTTVGDFDGHSRRVLSCEFKP--TRPFRIATCGEDFL 171
V+ G ++ +W++ TV D + HS V F P + P I +CG D L
Sbjct: 121 VS---GSRDKTIK--LWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPI-IVSCGWDKL 173
Query: 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE 231
V + K K +H H+ ++N + SPDGS S D + +++D G+ +
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
D I A+ +SP+ + L + S K+W++
Sbjct: 234 D----IINALCFSPN-RYWLCAATGPSIKIWDL 261
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE--------GPPFKFKL 184
M + T G GH+ V P P I + D + ++ G P +
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR--- 57
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ R HS+FV+ + S DG +S S D ++D +G F GH + +V++S
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFS 114
Query: 245 PDGKKVLTVSADKSAKVWEIL-------EDGSGGRVIKT--FASSTSNAVEDMLVGCLWQ 295
D +++++ S DK+ K+W L +D S + F+ ++SN + +V C W
Sbjct: 115 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI---IVSCGW- 170
Query: 296 NDHLITV 302
D L+ V
Sbjct: 171 -DKLVKV 176
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/351 (18%), Positives = 133/351 (37%), Gaps = 68/351 (19%)
Query: 233 GHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291
GH+G + ++ +P +L+ S DK+ +W++ D + + + S+ V D+++
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 72
Query: 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351
++ S G + ++ + F GH K+V ++ A + I+S S D
Sbjct: 73 S--DGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLSV-AFSSDNRQIVSGSRDKT 128
Query: 352 IIKW-IRGVGYSSKLEKKYDARIKCLA----AVEEVIFTAGFDN--KVWRVPLCEGECGD 404
I W GV + ++ + + C+ + +I + G+D KVW + C+ +
Sbjct: 129 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 405 AEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSE 464
H G+ + ++PDGS
Sbjct: 189 IGHT-----------------------------------------GY-LNTVTVSPDGSL 206
Query: 465 AIVGGQNGKL---------HIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN 515
GG++G+ H+Y++ G + + +R + P + ++ D
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT-GPSIKIW---DLE 262
Query: 516 REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566
+ IV D + +EV + + LAWS + G D V ++++
Sbjct: 263 GKIIV-DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS--MFA 510
V + A + D + + G ++ + +++ G + E H ++ +++SP+ S +
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Query: 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568
S ++ VW+ + ++K N+ + HT +N + SP ++ A+G D +++++ +
Sbjct: 167 SCGWDKLVKVWNLANCKLKTNH-IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 453 VTACAIAPDGSEAIV--GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA 510
V+ +P+ S I+ G + + +++++ L + H G + + SPD S+ A
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCA 208
Query: 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV--ATG------SIDTCVI 562
S + +A++WD E K L IN L +SP+ + ATG ++ +I
Sbjct: 209 SGGKDGQAMLWDL--NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 266
Query: 563 IYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLA 610
+ E+ + S T A +A+ D + +G D +RVW++
Sbjct: 267 VDELKQEVIS--TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 21/206 (10%)
Query: 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKN----EFKVLSGR-IDDLQWSPDGLRIVACG 121
+ P W+ + SG V +W +++ E V +G+ I W IV
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-----IVGSD 75
Query: 122 DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PF 180
D + +R F +++G V DF+ H + S PT+P+ + + +D V + +
Sbjct: 76 DFR----IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNW 130
Query: 181 KFKLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239
+ + H +FV C+ F+P D S S DR ++ G+ F+ G +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVN 188
Query: 240 AVSWS--PDGKKVLTVSADKSAKVWE 263
V + PD ++T S D + K+W+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFAS 511
+ + A+ P + G + + +++ N E+ E H + + ++P D S FAS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-TFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP--SSTMVATGSIDTCVIIYEIGKP 569
+R VW +N + + P + T S D + I++
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-- 216
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
S + H+ V F ++ SG ED +++W +T
Sbjct: 217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 143 FDGHSRRVLSCEFKPTRPFRIATC--GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200
F S RV +F PT P+ + T G L N+ + S + V +F
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIA 65
Query: 201 DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260
+ +I S D + +++ +GEK+ +F + H I +++ P VL+ S D + K
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 261 VW 262
+W
Sbjct: 123 LW 124
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 21/206 (10%)
Query: 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKN----EFKVLSGR-IDDLQWSPDGLRIVACG 121
+ P W+ + SG V +W +++ E V +G+ I W IV
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-----IVGSD 75
Query: 122 DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PF 180
D + +R F +++G V DF+ H + S PT+P+ + + +D V + +
Sbjct: 76 DFR----IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNW 130
Query: 181 KFKLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239
+ + H +FV C+ F+P D S S DR ++ G+ F+ G +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVN 188
Query: 240 AVSWS--PDGKKVLTVSADKSAKVWE 263
V + PD ++T S D + K+W+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFAS 511
+ + A+ P + G + + +++ N E+ E H + + ++P D S FAS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-TFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP--SSTMVATGSIDTCVIIYEIGKP 569
+R VW +N + + P + T S D + I++
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-- 216
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
S + H+ V F ++ SG ED +++W +T
Sbjct: 217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 143 FDGHSRRVLSCEFKPTRPFRIATC--GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200
F S RV +F PT P+ + T G L N+ + S + V +F
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIA 65
Query: 201 DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260
+ +I S D + +++ +GEK+ +F + H I +++ P VL+ S D + K
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 261 VW 262
+W
Sbjct: 123 LW 124
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 21/206 (10%)
Query: 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKN----EFKVLSGR-IDDLQWSPDGLRIVACG 121
+ P W+ + SG V +W +++ E V +G+ I W IV
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-----IVGSD 75
Query: 122 DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PF 180
D + +R F +++G V DF+ H + S PT+P+ + + +D V + +
Sbjct: 76 DFR----IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNW 130
Query: 181 KFKLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239
+ + H +FV C+ F+P D S S DR ++ G+ F+ G +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVN 188
Query: 240 AVSWS--PDGKKVLTVSADKSAKVWE 263
V + PD ++T S D + K+W+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 143 FDGHSRRVLSCEFKPTRPFRIATC--GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200
F S RV +F PT P+ + T G L N+ + S + V +F
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIA 65
Query: 201 DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260
+ +I S D + +++ +GEK+ +F + H I +++ P VL+ S D + K
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 261 VW 262
+W
Sbjct: 123 LW 124
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFAS 511
+ + A+ P + G + + +++ N E+ E H + + ++P D S FAS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-TFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP--SSTMVATGSIDTCVIIYEIGKP 569
+R VW +N + + P + T S D + I++
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY--Q 216
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
S + H+ V F ++ SG ED +++W +T
Sbjct: 217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 108/260 (41%), Gaps = 26/260 (10%)
Query: 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE--GPPFKFKL---SHREHSNFVNC 195
G +GH+ V S +P + + D + ++ G KF + S + HS+ V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 196 IRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255
+ DG+ +S S D+ ++D +GE F GH + +V +++ S
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315
DK+ KVW I G+ + T + +V +D +T+ G + A N
Sbjct: 128 DKTIKVWTI-----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 316 LDKAPLS--FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373
L++ + F GH N++TLTA I S+ DG I+ W L K +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW--------NLAAK--KAM 231
Query: 374 KCLAAVEEVIFTAGFDNKVW 393
L+A +EV A N+ W
Sbjct: 232 YTLSAQDEVFSLAFSPNRYW 251
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 19/162 (11%)
Query: 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
D + I++ G+ K V+A+ + DF GH+ + + P IA+ G+D +
Sbjct: 165 DSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEI 220
Query: 173 NFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKL-------ISVSSDRKGLIYDGKSGE 223
+ K + LS ++ V + FSP+ L I V S + D E
Sbjct: 221 MLWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265
G ++ + H S+ +WS DG+ + D +VW+++
Sbjct: 278 FAGYSAAAEPHAVSL---AWSADGQTLFAGYTDNVIRVWQVM 316
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518
A D S I+ N K+ + + + N E H I + SPD ++ ASA + E
Sbjct: 162 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPS----STMVATG----SIDTCVIIYEIGKPA 570
++W+ +K+ L + LA+SP+ + ATG S+D ++ ++
Sbjct: 221 MLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
+ H +A+ D + +G D IRVW++ T
Sbjct: 279 AGYSAAAEPH---AVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHRE 188
+WD +G T F GH V+S + + I + D + + +G L H +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 189 HSNFVNCIRFSP------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242
+V+ +R P D +IS +D+ ++ + +F GH+ +I ++
Sbjct: 150 ---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLT 203
Query: 243 WSPDGKKVLTVSADKSAKVWEI 264
SPDG + + D +W +
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520
D ++ + N ++HIY SGN + L++H G +T I ++PD + + +R A V
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYV 78
Query: 521 WDRVSKEVKLNNMLFHTAR-INCLAWSPSSTMVATGS----IDTCVIIYE--------IG 567
W + K ++ R C+ W+P+ A GS I C E I
Sbjct: 79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138
Query: 568 KPASSRITIKNAHLGGVYGVAFMDDF 593
KP S + + H V A DF
Sbjct: 139 KPIRSTVLSLDWHPNSVLLAAGSCDF 164
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252
++C ++ D +++ ++ + IY+ KSG K + H+G + + W+PD +++T
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 253 VSADKSAKVWEI 264
D++A VW +
Sbjct: 70 CGTDRNAYVWTL 81
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
VT APD + + G + +++++ G T +V+ + A ++++P+ FA
Sbjct: 55 VTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG 114
Query: 513 DGNRE-AIVWDRVSKEVKLNNMLFHTARINCLA--WSPSSTMVATGSID 558
G+R +I + + + + R L+ W P+S ++A GS D
Sbjct: 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 151 LSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDGSKLISV 208
+SC +IA C + V+ YE K+ H +EH+ V I ++PD +++++
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 209 SSDRKGLIYDGK 220
+DR ++ K
Sbjct: 71 GTDRNAYVWTLK 82
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134
N +V +E K +G++ + W+PD RIV CG + A++W
Sbjct: 40 NKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN-----AYVW 79
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 535 FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN 594
F I+C AW+ T +A + V IYE ++ H G V G+ + D N
Sbjct: 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSN 65
Query: 595 -VVSSGEDACIRVWRL 609
+V+ G D VW L
Sbjct: 66 RIVTCGTDRNAYVWTL 81
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 12/192 (6%)
Query: 75 ASADVSGSVRIWGTHNGFVLKNEFKVLSGRID--DLQWSPDGLRIVACGDGKGKSFVRAF 132
AS+ + +R+W NG +K+ + +G +D L +SPD + +A G GK V F
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKS---IDAGPVDAWTLAFSPDS-QYLATGTHVGK--VNIF 149
Query: 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF 192
+SG D + +LS + P + +A+ D ++N ++ K + H+
Sbjct: 150 GVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMP 208
Query: 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252
+ + FSPD L++ S D IYD + G S GH + V++ PD ++
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFCPDDTHFVS 265
Query: 253 VSADKSAKVWEI 264
S+DKS KVW++
Sbjct: 266 SSSDKSVKVWDV 277
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV-LSGR-IDDLQWSPDGLRIVACGDGK 124
+SP+ +++A+ G V I+G +G K E+ + G+ I + +SPDG + +A G
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDG-KYLASGAID 185
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
G + F +G + +GH+ + S F P + T +D + Y+
Sbjct: 186 G--IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANLAG 242
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ H+++V + F PD + +S SSD+ ++D + + F H ++ V ++
Sbjct: 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD---HQDQVWGVKYN 299
Query: 245 PDGKKVLTVSADKSAKVWE 263
+G K+++V D+ +++
Sbjct: 300 GNGSKIVSVGDDQEIHIYD 318
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Query: 438 LDSLKVMSKIDLG-FTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA 496
L++ K + ID G A +PD G GK++I+ + +E L+
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTRGKF 166
Query: 497 ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556
I I YSPD AS + ++D + ++ L+ + H I L +SP S ++ T S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 557 IDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDD 592
D + IY++ + A+ T+ + H V VAF D
Sbjct: 226 DDGYIKIYDV-QHANLAGTL-SGHASWVLNVAFCPD 259
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520
D ++ + N ++HIY SGN + L++H G +T + ++PD + + +R A V
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78
Query: 521 WDRVSKEVKLNNMLFHTAR-INCLAWSPSSTMVATGS----IDTCVIIYE--------IG 567
W + K ++ R C+ W+P+ A GS I C E I
Sbjct: 79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138
Query: 568 KPASSRITIKNAHLGGVYGVAFMDDF 593
KP S + + H V A DF
Sbjct: 139 KPIRSTVLSLDWHPNSVLLAAGSCDF 164
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252
++C ++ D +++ ++ + IY+ KSG K + H+G + V W+PD +++T
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 253 VSADKSAKVWEI 264
D++A VW +
Sbjct: 70 CGTDRNAYVWTL 81
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
VT APD + + G + +++++ G T +V+ + A ++++P+ FA
Sbjct: 55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG 114
Query: 513 DGNRE-AIVWDRVSKEVKLNNMLFHTARINCLA--WSPSSTMVATGSID 558
G+R +I + + + + R L+ W P+S ++A GS D
Sbjct: 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 151 LSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDGSKLISV 208
+SC +IA C + V+ YE K+ H +EH+ V + ++PD +++++
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 209 SSDRKGLIYDGK 220
+DR ++ K
Sbjct: 71 GTDRNAYVWTLK 82
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134
N +V +E K +G++ + W+PD RIV CG + A++W
Sbjct: 40 NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN-----AYVW 79
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 535 FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN 594
F I+C AW+ T +A + V IYE ++ H G V GV + D N
Sbjct: 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 65
Query: 595 -VVSSGEDACIRVWRL 609
+V+ G D VW L
Sbjct: 66 RIVTCGTDRNAYVWTL 81
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 12/160 (7%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGN-----TLTEEMVLEKHRGAITVIQYSPDV- 506
V CA AP+G GG + I+++S + VL H+G + QY PD
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 507 SMFASADGNREAIVWDRVS-KEVKLNNMLF---HTARINCLAW-SPSSTMVATGSIDTCV 561
+ + G++ ++WD + + + + F HTA + L+ S ++ M +GS DT V
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 562 IIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED 601
++++ + S + + H G + V F D +G D
Sbjct: 231 RLWDL-RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
L+ H G + + ++P+ + SA + IVW+ ++ + K + + H + A++P+
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPN 119
Query: 549 STMVATGSIDTCVIIYEIGK--------PASSRITIKNAHLGGVYGVAFMDDFNVVSSGE 600
VA G +D+ I+ + P S +T + V + + SG+
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 601 DACIRVWRLAT 611
C+ +W + T
Sbjct: 180 QTCV-LWDVTT 189
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 32/222 (14%)
Query: 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKNEF---KVLSGR---IDDLQWSPDGLRIVAC 120
++PNG+ +A + + I+ + +VL+G Q+ PD +
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 121 GDGKGKSFVRAFMWD--SGTTVGDF-----DGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173
G G +WD +G + F GH+ VLS + D V
Sbjct: 176 GSGDQT----CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 174 FYEGPPFKFKLSHRE------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227
++ +++ R H +N ++F PDG + + S D ++D ++G ++
Sbjct: 232 LWD-----LRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 228 FSSE----DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265
++ E D + +V++S G+ + ++ VW+ L
Sbjct: 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG-----AITVIQYSPDVSMFASADG 514
PDG G +G ++ + + E R +T + +S + +
Sbjct: 259 PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318
Query: 515 NREAIVWDRVSKEVKLNNMLF---HTARINCLAWSPSSTMVATGSIDTCVIIY 564
N + VWD + E+ LN H RI+CL S + + TGS D + I+
Sbjct: 319 NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 19/220 (8%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK--NEFKVLSGRIDDLQWSPDGL 115
H V ++P WI SA G + +W N + + K+ + + ++P+G
Sbjct: 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVW---NALTSQKTHAIKLHCPWVMECAFAPNG- 120
Query: 116 RIVACG--DGKGKSFVRAFMWDSGTTVG---DFDGHSRRVLSCEFKPTRPFRIATCGEDF 170
+ VACG D F + D + GH SC++ P + R+ T D
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 171 LVNFYEGPP------FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224
++ F + ++ ++ S + + IS S D ++D + +
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
+ GH G I +V + PDG++ T S D + +++++
Sbjct: 241 --AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 12/141 (8%)
Query: 133 MWD---SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHRE 188
+WD + V + GH + S +F P R T +D ++ + ++ +RE
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNRE 290
Query: 189 HSN------FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS-EDGHHGSIYAV 241
V + FS G L + S+ ++D E + + ++ H G I +
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 242 SWSPDGKKVLTVSADKSAKVW 262
S DG + T S DK+ K+W
Sbjct: 351 GLSSDGSALCTGSWDKNLKIW 371
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 29/137 (21%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292
GH G +Y++ W+P+ +++ S D VW L TS + + C
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL---------------TSQKTHAIKLHC 108
Query: 293 LWQNDHLI-----TVSLGGIISIFSASNLD-------KAPLS--FSGHVKNVSTLTALKI 338
W + +V+ GG+ S S NL P+S +GH S+ +
Sbjct: 109 PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 339 SQQTILSSSYDGAIIKW 355
+ +++ S D + W
Sbjct: 169 QETRLITGSGDQTCVLW 185
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 26/222 (11%)
Query: 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214
F P F +AT ED L+ ++ K + + H + + + P G KL+S S DR
Sbjct: 131 FSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRV 273
I+D ++G+ S EDG + V+ SP DGK + S D++ +VW D G +
Sbjct: 190 RIWDLRTGQCSLTLSIEDG----VTTVAVSPGDGKYIAAGSLDRAVRVW----DSETGFL 241
Query: 274 IKTFASSTSNAV--EDMLVGCLWQND--HLITVSLGGIISIFSASNLD-----KAP---- 320
++ S + +D + ++ D +++ SL + +++ N + K P
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 321 --LSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360
+++ GH K+ A + + ILS S D ++ W + G
Sbjct: 302 CEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 11/178 (6%)
Query: 439 DSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAIT 498
++L S + + +PDG G ++ + I+ I + M+L+ H I
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQGHEQDIY 169
Query: 499 VIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSI 557
+ Y P S G+R +WD + + L L + +A SP +A GS+
Sbjct: 170 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL--TLSIEDGVTTVAVSPGDGKYIAAGSL 227
Query: 558 DTCVIIYE-----IGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIRVWRL 609
D V +++ + + S H VY V F D V SG D +++W L
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 59/206 (28%)
Query: 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDD---LQWSPDGLRIVACGDG 123
+SP+G+++A+ +RIW N ++ +L G D L + P G ++V+ G
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIV----MILQGHEQDIYSLDYFPSGDKLVS---G 183
Query: 124 KGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK 183
G VR +WD T G LS E
Sbjct: 184 SGDRTVR--IWDLRT------GQCSLTLSIE----------------------------- 206
Query: 184 LSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSED----GHHGSI 238
+ V + SP DG + + S DR ++D ++G + SE+ GH S+
Sbjct: 207 -------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259
Query: 239 YAVSWSPDGKKVLTVSADKSAKVWEI 264
Y+V ++ DG+ V++ S D+S K+W +
Sbjct: 260 YSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 62 VTVARYSP-NGEWIASADVSGSVRIWGTHNGFV---LKNEFKVLSGRIDDLQ---WSPDG 114
VT SP +G++IA+ + +VR+W + GF+ L +E + +G D + ++ DG
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 115 LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174
+V+ G +W+ D + +CE
Sbjct: 269 QSVVS-----GSLDRSVKLWNLQNANNKSDSKTPNSGTCE-------------------- 303
Query: 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234
+++ H +FV + + + ++S S DR L +D KSG + GH
Sbjct: 304 ---------VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GH 351
Query: 235 HGSIYAV------SWSPDGKKVLTVSADKSAKVWE 263
S+ +V S P+ T S D A++W+
Sbjct: 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 188 EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS---------- 237
+H++ V C++FS DG + ++ ++ +Y G + S + +
Sbjct: 62 DHTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120
Query: 238 -----IYAVSWSPDGKKVLTVSADKSAKVWEI 264
I +V +SPDGK + T + D+ ++W+I
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 35/305 (11%)
Query: 103 GRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTT--VGDFDGHSRRVLSCEFKPTR 159
+I + W D L + A DGK +WDS TT V S V++C + P+
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 160 PFRIATCGEDFLVNFYEGPPFKFKLS-HRE---HSNFVNCIRFSPDGSKLISVSSDRKGL 215
+ +A G D + + Y + + RE H+ +++C RF D +++++ S D
Sbjct: 110 NY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCA 167
Query: 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275
++D E + ++ GH G + ++S +PD + ++ + D SAK+W++ E G +
Sbjct: 168 LWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQ 220
Query: 276 TFASSTSNAVEDMLVGCLWQN-DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334
TF S D+ C + N + T S +F D+ +++S H + +T
Sbjct: 221 TFTGHES----DINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYS-HDNIICGIT 274
Query: 335 ALKISQQ-TILSSSYDGAIIK-WIRGVGYSSKLEKKYDARIKCLAAVEE--VIFTAGFDN 390
++ S+ +L + YD W + + +D R+ CL ++ + T +D+
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 391 --KVW 393
K+W
Sbjct: 335 FLKIW 339
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
L H I + + D + SA + + I+WD + K++ + ++ + A++PS
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 108
Query: 549 STMVATGSIDTCVIIYEIG-KPASSRITIKNA-HLGGVYGVAFMDDFNVVSSGEDACIRV 606
VA G +D IY + + + R++ + A H G + F+DD +V+S D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 607 W 607
W
Sbjct: 169 W 169
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI---SGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509
V CA AP G+ GG + IY++ GN L H G ++ ++ D +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE-LAGHTGYLSCCRFLDDNQIV 158
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKP 569
S+ G+ +WD + + HT + L+ +P + + +G+ D ++++ +
Sbjct: 159 TSS-GDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV-RE 215
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLATE 612
R T H + + F + N ++G +DA R++ L +
Sbjct: 216 GMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552
H G + + +PD +F S + A +WD V + + H + IN + + P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED 601
ATGS D ++++ + + G+ V+F ++ +G D
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---AITVIQYSPDVSMF 509
+ A P+G+ G + ++ + + +E++ H IT + +S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565
+ + VWD + K + + H R++CL + VATGS D+ + I+
Sbjct: 286 LAGYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 35/305 (11%)
Query: 103 GRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTT--VGDFDGHSRRVLSCEFKPTR 159
+I + W D L + A DGK +WDS TT V S V++C + P+
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 160 PFRIATCGEDFLVNFYEGPPFKFKLS-HRE---HSNFVNCIRFSPDGSKLISVSSDRKGL 215
+ +A G D + + Y + + RE H+ +++C RF D +++++ S D
Sbjct: 110 NY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCA 167
Query: 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275
++D E + ++ GH G + ++S +PD + ++ + D SAK+W++ E G +
Sbjct: 168 LWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQ 220
Query: 276 TFASSTSNAVEDMLVGCLWQN-DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334
TF S D+ C + N + T S +F D+ +++S H + +T
Sbjct: 221 TFTGHES----DINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYS-HDNIICGIT 274
Query: 335 ALKISQQ-TILSSSYDGAIIK-WIRGVGYSSKLEKKYDARIKCLAAVEE--VIFTAGFDN 390
++ S+ +L + YD W + + +D R+ CL ++ + T +D+
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 391 --KVW 393
K+W
Sbjct: 335 FLKIW 339
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
L H I + + D + SA + + I+WD + K++ + ++ + A++PS
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 108
Query: 549 STMVATGSIDTCVIIYEIG-KPASSRITIKNA-HLGGVYGVAFMDDFNVVSSGEDACIRV 606
VA G +D IY + + + R++ + A H G + F+DD +V+S D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 607 W 607
W
Sbjct: 169 W 169
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI---SGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509
V CA AP G+ GG + IY++ GN L H G ++ ++ D +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE-LAGHTGYLSCCRFLDDNQIV 158
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKP 569
S+ G+ +WD + + HT + L+ +P + + +G+ D ++++ +
Sbjct: 159 TSS-GDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV-RE 215
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLATE 612
R T H + + F + N ++G +DA R++ L +
Sbjct: 216 GMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552
H G + + +PD +F S + A +WD V + + H + IN + + P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED 601
ATGS D ++++ + + G+ V+F ++ +G D
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---AITVIQYSPDVSMF 509
+ A P+G+ G + ++ + + +E++ H IT + +S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565
+ + VWD + K + + H R++CL + VATGS D+ + I+
Sbjct: 286 LAGYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 35/305 (11%)
Query: 103 GRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTT--VGDFDGHSRRVLSCEFKPTR 159
+I + W D L + A DGK +WDS TT V S V++C + P+
Sbjct: 67 AKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 160 PFRIATCGEDFLVNFYEGPPFKFKLS-HRE---HSNFVNCIRFSPDGSKLISVSSDRKGL 215
+ +A G D + + Y + + RE H+ +++C RF D +++++ S D
Sbjct: 121 NY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCA 178
Query: 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275
++D E + ++ GH G + ++S +PD + ++ + D SAK+W++ E G +
Sbjct: 179 LWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQ 231
Query: 276 TFASSTSNAVEDMLVGCLWQN-DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334
TF S D+ C + N + T S +F D+ +++S H + +T
Sbjct: 232 TFTGHES----DINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYS-HDNIICGIT 285
Query: 335 ALKISQQ-TILSSSYDGAIIK-WIRGVGYSSKLEKKYDARIKCLAAVEE--VIFTAGFDN 390
++ S+ +L + YD W + + +D R+ CL ++ + T +D+
Sbjct: 286 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 345
Query: 391 --KVW 393
K+W
Sbjct: 346 FLKIW 350
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
L H I + + D + SA + + I+WD + K++ + ++ + A++PS
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 119
Query: 549 STMVATGSIDTCVIIYEIG-KPASSRITIKNA-HLGGVYGVAFMDDFNVVSSGEDACIRV 606
VA G +D IY + + + R++ + A H G + F+DD +V+S D +
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 607 W 607
W
Sbjct: 180 W 180
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI---SGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509
V CA AP G+ GG + IY++ GN L H G ++ ++ D +
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE-LAGHTGYLSCCRFLDDNQIV 169
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKP 569
S+ G+ +WD + + HT + L+ +P + + +G+ D ++++ +
Sbjct: 170 TSS-GDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV-RE 226
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLATE 612
R T H + + F + N ++G +DA R++ L +
Sbjct: 227 GMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552
H G + + +PD +F S + A +WD V + + H + IN + + P+
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED 601
ATGS D ++++ + + G+ V+F ++ +G D
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 301
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---AITVIQYSPDVSMF 509
+ A P+G+ G + ++ + + +E++ H IT + +S +
Sbjct: 240 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565
+ + VWD + K + + H R++CL + VATGS D+ + I+
Sbjct: 297 LAGYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 35/305 (11%)
Query: 103 GRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTT--VGDFDGHSRRVLSCEFKPTR 159
+I + W D L + A DGK +WDS TT V S V++C + P+
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGK------LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 160 PFRIATCGEDFLVNFYEGPPFKFKLS-HRE---HSNFVNCIRFSPDGSKLISVSSDRKGL 215
+ +A G D + + Y + + RE H+ +++C RF D +++++ S D
Sbjct: 110 NY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCA 167
Query: 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275
++D E + ++ GH G + ++S +PD + ++ + D SAK+W++ E G +
Sbjct: 168 LWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQ 220
Query: 276 TFASSTSNAVEDMLVGCLWQN-DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334
TF S D+ C + N + T S +F D+ +++S H + +T
Sbjct: 221 TFTGHES----DINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYS-HDNIICGIT 274
Query: 335 ALKISQQ-TILSSSYDGAIIK-WIRGVGYSSKLEKKYDARIKCLAAVEE--VIFTAGFDN 390
++ S+ +L + YD W + + +D R+ CL ++ + T +D+
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 391 --KVW 393
K+W
Sbjct: 335 FLKIW 339
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
L H I + + D + SA + + I+WD + K++ + ++ + A++PS
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 108
Query: 549 STMVATGSIDTCVIIYEIG-KPASSRITIKNA-HLGGVYGVAFMDDFNVVSSGEDACIRV 606
VA G +D IY + + + R++ + A H G + F+DD +V+S D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 607 W 607
W
Sbjct: 169 W 169
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI---SGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509
V CA AP G+ GG + IY++ GN L H G ++ ++ D +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE-LAGHTGYLSCCRFLDDNQIV 158
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKP 569
S+ G+ +WD + + HT + L+ +P + + +G+ D ++++ +
Sbjct: 159 TSS-GDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV-RE 215
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLATE 612
R T H + + F + N ++G +DA R++ L +
Sbjct: 216 GMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552
H G + + +PD +F S + A +WD V + + H + IN + + P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED 601
ATGS D ++++ + + G+ V+F ++ +G D
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---AITVIQYSPDVSMF 509
+ A P+G+ G + ++ + + +E++ H IT + +S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565
+ + VWD + K + + H R++CL + VATGS D+ + I+
Sbjct: 286 LAGYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
GH IYA+ W D + +L+ S D +W+
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWD 83
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 35/305 (11%)
Query: 103 GRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTT--VGDFDGHSRRVLSCEFKPTR 159
+I + W D L + A DGK +WDS TT V S V++C + P+
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGK------LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 160 PFRIATCGEDFLVNFYEGPPFKFKLS-HRE---HSNFVNCIRFSPDGSKLISVSSDRKGL 215
+ +A G D + + Y + + RE H+ +++C RF D +++++ S D
Sbjct: 110 NY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCA 167
Query: 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275
++D E + ++ GH G + ++S +PD + ++ + D SAK+W++ E G +
Sbjct: 168 LWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQ 220
Query: 276 TFASSTSNAVEDMLVGCLWQN-DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334
TF S D+ C + N + T S +F D+ +++S H + +T
Sbjct: 221 TFTGHES----DINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYS-HDNIICGIT 274
Query: 335 ALKISQQ-TILSSSYDGAIIK-WIRGVGYSSKLEKKYDARIKCLAAVEE--VIFTAGFDN 390
++ S+ +L + YD W + + +D R+ CL ++ + T +D+
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 391 --KVW 393
K+W
Sbjct: 335 FLKIW 339
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
L H I + + D + SA + + I+WD + K++ + ++ + A++PS
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 108
Query: 549 STMVATGSIDTCVIIYEIG-KPASSRITIKNA-HLGGVYGVAFMDDFNVVSSGEDACIRV 606
VA G +D IY + + + R++ + A H G + F+DD +V+S D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 607 W 607
W
Sbjct: 169 W 169
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSI---SGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509
V CA AP G+ GG + IY++ GN L H G ++ ++ D +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE-LAGHTGYLSCCRFLDDNQIV 158
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKP 569
S+ G+ +WD + + HT + L+ +P + + +G+ D ++++ +
Sbjct: 159 TSS-GDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV-RE 215
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLATE 612
R T H + + F + N ++G +DA R++ L +
Sbjct: 216 GMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552
H G + + +PD +F S + A +WD V + + H + IN + + P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED 601
ATGS D ++++ + + G+ V+F ++ +G D
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---AITVIQYSPDVSMF 509
+ A P+G+ G + ++ + + +E++ H IT + +S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565
+ + VWD + K + + H R++CL + VATGS D+ + I+
Sbjct: 286 LAGYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
GH IYA+ W D + +L+ S D +W+
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWD 83
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 182 FKLSHRE---HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238
F + H+ H++FV+ + S + IS S D+ ++D ++G F GH +
Sbjct: 65 FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV---GHQSEV 121
Query: 239 YAVSWSPDGKKVLTVSADKSAKVWEIL 265
Y+V++SPD +++L+ A++ K+W IL
Sbjct: 122 YSVAFSPDNRQILSAGAEREIKLWNIL 148
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE-GPPFKFKLSHRE- 188
+WD +GTT F GH V S F P +I + G + + + KF + +E
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 189 HSNFVNCIRFSP---DGSKLISVSSDRKGLIYDGKSGEKIGEFS---SEDGHHGSIYAVS 242
HS++V+C+R+SP +K+ + + +DG+ F + H ++ +S
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLS 220
Query: 243 WSPDGKKVLTVSADKSAKVWEIL 265
SP+GK + T DK +W+IL
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDIL 243
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 20/173 (11%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS----- 507
V + A +PD + + G ++ +++I G E H ++ ++YSP +
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
Query: 508 -----MFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVI 562
FAS + VW+ + +++ H + +N L+ SP+ +ATG D ++
Sbjct: 181 QPFAPYFASVGWDGRLKVWN-TNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 563 IYEIGKPASSRITIKNAHLGG---VYGVAFMDDFNVVSSGEDACIRVWRLATE 612
I++I +T + +AF V+ G D ++++ L T+
Sbjct: 239 IWDI-----LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQ 286
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY-PV- 62
H SE Y+ A S + R IL +G + + G +K H ++ Y P+
Sbjct: 117 HQSEVYSVAFSPD-NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIM 174
Query: 63 -TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACG 121
+ + P + AS G +++W T+ F ++ FK ++ L SP+G I G
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGG 232
Query: 122 DGKGKSFVRAFMWD 135
K + +WD
Sbjct: 233 KDK-----KLLIWD 241
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
V+ A++ + AI + L ++ + T + V H+ + + +SPD SA
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSEVYSVAFSPDNRQILSA 136
Query: 513 DGNREAIVWD-----RVSKEVKLNNMLFHTARINCLAWSP 547
RE +W+ + S K N H+ ++C+ +SP
Sbjct: 137 GAEREIKLWNILGECKFSSAEKEN----HSDWVSCVRYSP 172
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 163 IATCGEDFLVNFY--EGPPFKFKLSHRE-HSNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219
+A+CG D + + EG + K E H V + +SP G+ L S S D I+
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW-K 89
Query: 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267
K+ + ++ +GH + +V+W+P G + T S DKS VWE+ E+
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 89/201 (44%), Gaps = 8/201 (3%)
Query: 67 YSPNGEWIASADVSGSVRIWGTH-NGFVLKNEFKVLSGR-IDDLQWSPDGLRIVACGDGK 124
++P G +AS +RIWGT + ++ K+ R + + WSP G +A
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFD 82
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE---GPPFK 181
+ + D V +GH V S + P+ +ATC D V +E ++
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEYE 141
Query: 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241
H+ V + + P L S S D +Y + + + ++ +GH +++++
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC-CATLEGHESTVWSL 200
Query: 242 SWSPDGKKVLTVSADKSAKVW 262
++ P G+++ + S D++ ++W
Sbjct: 201 AFDPSGQRLASCSDDRTVRIW 221
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL-EKHRGAITVIQYSPDVSMFASADGN 515
A P G+ G + ++ I+ G++ + VL E H+ + + +SP + ASA +
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 516 REAIVWDRVSKEVKLNNMLF-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSR- 573
+W + + + L H + +AW+PS ++AT S D V ++E+ +
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 574 ITIKNAHLGGVYGVAFMDDFNVVSSGE-DACIRVWR 608
+++ N+H V V + +++S D ++++R
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 26/184 (14%)
Query: 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIW-GTHNGFVLKNEFKVLSGRIDDLQW 110
V H V + P+ E +ASA +V+++ + +V + + L +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 111 SPDGLRIVACGDGKGKSFVRAFM---------------WDSGTTVGDFDGHSRRVLSCEF 155
P G R+ +C D + R ++ W T+ F HSR + +
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAW 260
Query: 156 KPTRPFRIATCGEDFLVNFYEGP---PFK--FKLS---HREHSNFVNCIRFSPDGSKLIS 207
CG+D + F E P P + F L+ H+ HS VNC+ ++P L++
Sbjct: 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 208 VSSD 211
SD
Sbjct: 321 SCSD 324
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 79/214 (36%), Gaps = 14/214 (6%)
Query: 14 PSTERGRGILISGNPKTDTILYCNG-RSVLI------RYLDKPLHVEFYGEHGYPVTVAR 66
P+ R ++ NP + C G R + I ++ K + E H V
Sbjct: 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSE---GHQRTVRKVA 68
Query: 67 YSPNGEWIASADVSGSVRIW-GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG 125
+SP G ++ASA + IW + F + + + W+P G + C K
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Query: 126 KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFK 183
D V + H++ V + P++ +A+ D V Y E +
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCC 187
Query: 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217
+ H + V + F P G +L S S DR I+
Sbjct: 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 26/210 (12%)
Query: 196 IRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255
+ ++P G+ L S DR+ I+ + I + +GH ++ V+WSP G + + S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW--QNDHLITVSLGGIISIFSA 313
D + +W+ +D +T E+ + W + L T S + ++
Sbjct: 82 DATTCIWKKNQD-------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Query: 314 SNLDKAPL--SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371
D+ + H ++V + SQ+ + S+SYD + KL ++ +
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVV-WHPSQELLASASYDDTV-----------KLYREEED 182
Query: 372 RIKCLAAV---EEVIFTAGFDNKVWRVPLC 398
C A + E +++ FD R+ C
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASC 212
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 19/170 (11%)
Query: 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF--------DGHSRRVLSCEFKPTR 159
L W+P G + +CG + R +W T GD +GH R V + P
Sbjct: 22 LAWNPAGTLLASCGGDR-----RIRIW---GTEGDSWICKSVLSEGHQRTVRKVAWSPCG 73
Query: 160 PFRIATCGEDFLVNFYEGPPFKFKL--SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217
+ +A+ D ++ F+ + H N V + ++P G+ L + S D+ ++
Sbjct: 74 NY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267
+ ++ S + H + V W P + + + S D + K++ ED
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED 182
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 29/144 (20%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIW-----GTHNGFVLKNE------FKVLSG--- 103
H V + P+G+ +AS +VRIW G G LSG
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
Query: 104 -RIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGT---------TVGDFDGHSRRVLS 152
I D+ W G ACGD +R F D + T HS+ V
Sbjct: 253 RTIYDIAWCQLTGALATACGDDA----IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC 308
Query: 153 CEFKPTRPFRIATCGEDFLVNFYE 176
+ P P +A+C +D V F++
Sbjct: 309 VAWNPKEPGLLASCSDDGEVAFWK 332
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 12/188 (6%)
Query: 33 ILYCNGRSVLIRYLDKPL---HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT- 88
IL RS I + D + HV H V R++P+G +AS V +W +
Sbjct: 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180
Query: 89 --HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH 146
G+V F G + + W P ++A G G +R + SG + D H
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 147 SRRVLSCEFKPTRPFRIATCGEDFLVN---FYEGPPFKFKLSHREHSNFVNCIRFSPDGS 203
S +V S + P ++ G F N ++ P + H++ V + SPDG+
Sbjct: 241 S-QVCSILWSPH--YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 297
Query: 204 KLISVSSD 211
+ S ++D
Sbjct: 298 TVASAAAD 305
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 471 NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530
+ ++++S S + + + +E+ I+ + + + + A + E +WD V ++ +L
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 102
Query: 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590
NM H+AR+ L+W +S ++++GS + +++ + A + + H V G+ +
Sbjct: 103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDV-RVAEHHVATLSGHSQEVCGLRWA 159
Query: 591 DD-FNVVSSGEDACIRVW 607
D ++ S G D + VW
Sbjct: 160 PDGRHLASGGNDNLVNVW 177
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDG 268
S R G I+ ++ GH + + W+PDG+ + + D VW G
Sbjct: 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APG 182
Query: 269 SGGRV-IKTFASSTSNAVEDMLVGCLWQNDHLIT 301
GG V ++TF + + C WQ++ L T
Sbjct: 183 EGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLAT 214
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 12/188 (6%)
Query: 33 ILYCNGRSVLIRYLDKPL---HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT- 88
IL RS I + D + HV H V R++P+G +AS V +W +
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260
Query: 89 --HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH 146
G+V F G + + W P ++A G G +R + SG + D H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 147 SRRVLSCEFKPTRPFRIATCGEDFLVN---FYEGPPFKFKLSHREHSNFVNCIRFSPDGS 203
S +V S + P ++ G F N ++ P + H++ V + SPDG+
Sbjct: 321 S-QVCSILWSPH--YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 377
Query: 204 KLISVSSD 211
+ S ++D
Sbjct: 378 TVASAAAD 385
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 471 NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530
+ ++++S S + + + +E+ I+ + + + + A + E +WD V ++ +L
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 182
Query: 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590
NM H+AR+ L+W +S ++++GS + +++ + A + + H V G+ +
Sbjct: 183 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDV-RVAEHHVATLSGHSQEVCGLRWA 239
Query: 591 DD-FNVVSSGEDACIRVW 607
D ++ S G D + VW
Sbjct: 240 PDGRHLASGGNDNLVNVW 257
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520
D + + G ++ + I+ NTL + +L H G++ +QY V + S+D V
Sbjct: 142 DDQKIVSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQYDERVIITGSSDST--VRV 197
Query: 521 WDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH 580
WD + E+ LN ++ H + L + ++ M+ T S D + ++++ P IT++
Sbjct: 198 WDVNTGEM-LNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTD--ITLRRVL 252
Query: 581 LG--GVYGVAFMDDFNVVSSGEDACIRVWRLAT 611
+G V DD +VS+ D I+VW +T
Sbjct: 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 91/211 (43%), Gaps = 31/211 (14%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
H+ V C+++ D +I+ SSD ++D +GE + HH + +
Sbjct: 172 HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI----HHCEA-VLHLRFNNG 224
Query: 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG-------CLWQNDHLIT 301
++T S D+S VW++ AS T + +LVG + + ++++
Sbjct: 225 MMVTCSKDRSIAVWDM-------------ASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 271
Query: 302 VSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361
S I +++ S + + +GH + ++ L+ + ++S S D I W G
Sbjct: 272 ASGDRTIKVWNTSTCEFVR-TLNGHKRGIA---CLQYRDRLVVSGSSDNTIRLWDIECGA 327
Query: 362 SSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392
++ + ++ ++C+ + I + +D K+
Sbjct: 328 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 358
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/290 (18%), Positives = 103/290 (35%), Gaps = 34/290 (11%)
Query: 335 ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN--KV 392
L+ Q I+S D I W + ++ + + CL E VI T D+ +V
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 197
Query: 393 WRVPLCE------GECGDAEHIDVGXXXXXXXXXXXXXXXXXXXTESGVILLDSLKVMSK 446
W V E C H+ + + + L +
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL-------RR 250
Query: 447 IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV--LEKHRGAITVIQYSP 504
+ +G + D + + + ++ NT T E V L H+ I +QY
Sbjct: 251 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVW----NTSTCEFVRTLNGHKRGIACLQYRD 306
Query: 505 DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564
+ + S+D +WD + L + H + C+ + + + +G+ D + ++
Sbjct: 307 RLVVSGSSDNTIR--LWD-IECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 361
Query: 565 EIGKPASSR-------ITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVW 607
++ R + H G V+ + F D+F +VSS D I +W
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIW 410
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 12/188 (6%)
Query: 33 ILYCNGRSVLIRYLDKPL---HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT- 88
IL RS I + D + HV H V R++P+G +AS V +W +
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 271
Query: 89 --HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH 146
G+V F G + + W P ++A G G +R + SG + D H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 147 SRRVLSCEFKPTRPFRIATCGEDFLVN---FYEGPPFKFKLSHREHSNFVNCIRFSPDGS 203
S +V S + P ++ G F N ++ P + H++ V + SPDG+
Sbjct: 332 S-QVCSILWSPH--YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 388
Query: 204 KLISVSSD 211
+ S ++D
Sbjct: 389 TVASAAAD 396
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 471 NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530
+ ++++S S + + + +E+ I+ + + + + A + E +WD V ++ +L
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 193
Query: 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590
NM H+AR+ L+W +S ++++GS + +++ + A + + H V G+ +
Sbjct: 194 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDV-RVAEHHVATLSGHSQEVCGLRWA 250
Query: 591 DD-FNVVSSGEDACIRVW 607
D ++ S G D + VW
Sbjct: 251 PDGRHLASGGNDNLVNVW 268
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDG 202
D H+ V F P F +AT D V ++ K KL S H + + +++SP
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 335
Query: 203 SKLISVS-SDRKGLIYD-GKSGEKIGEFSSED----------GHHGSIYAVSWSPDGKKV 250
+++ S +DR+ ++D K GE+ +ED GH I SW+P+ +
Sbjct: 336 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 395
Query: 251 L-TVSADKSAKVWEILED 267
+ +VS D +VW++ E+
Sbjct: 396 ICSVSEDNIMQVWQMAEN 413
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 464 EAIVG--GQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVS-MFASADGNREAI 519
E++ G + KL I+ + NT ++ H + + ++P + A+ ++
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 520 VWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIGKPASSRITIKN 578
+WD + ++KL++ H I + WSP + T++A+ D + ++++ K + T ++
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST-ED 364
Query: 579 AHLGG-----VYG--VAFMDDFN--------VVSSGEDACIRVWRLA 610
A G ++G A + DF+ + S ED ++VW++A
Sbjct: 365 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 30/227 (13%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKG-LIYDGKSGEKIGEFSSE-------DGHHGSIYA 240
H VN R+ P + +I+ + L++D E S E GH Y
Sbjct: 129 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 188
Query: 241 VSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRVI--KTFASSTSNAVEDMLVGCLWQND 297
+SW+P+ +L+ S D + +W+I RVI K + + VED+ W
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV----AW--- 241
Query: 298 HLITVSLGG--------IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349
HL+ SL G +I +N K + H V+ L+ S+ + + S D
Sbjct: 242 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 350 GAIIKW-IRGVG---YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392
+ W +R + +S + K +++ E ++ ++G D ++
Sbjct: 302 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 23/146 (15%)
Query: 48 KPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRID 106
KP H H V ++P E+I A+ +V +W N + + F+ I
Sbjct: 270 KPSHT--VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 327
Query: 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWD-----SGTTVGDFD-----------GHSRRV 150
+QWSP I+A G + R +WD + D + GH+ ++
Sbjct: 328 QVQWSPHNETILASS-GTDR---RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 151 LSCEFKPTRPFRIATCGEDFLVNFYE 176
+ P P+ I + ED ++ ++
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVWQ 409
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDG 202
D H+ V F P F +AT D V ++ K KL S H + + +++SP
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 333
Query: 203 SKLISVS-SDRKGLIYD-GKSGEKIGEFSSED----------GHHGSIYAVSWSPDGKKV 250
+++ S +DR+ ++D K GE+ +ED GH I SW+P+ +
Sbjct: 334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393
Query: 251 L-TVSADKSAKVWEILED 267
+ +VS D +VW++ E+
Sbjct: 394 ICSVSEDNIMQVWQMAEN 411
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 464 EAIVG--GQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVS-MFASADGNREAI 519
E++ G + KL I+ + NT ++ H + + ++P + A+ ++
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 520 VWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIGKPASSRITIKN 578
+WD + ++KL++ H I + WSP + T++A+ D + ++++ K + T ++
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST-ED 362
Query: 579 AHLGG-----VYG--VAFMDDFN--------VVSSGEDACIRVWRLA 610
A G ++G A + DF+ + S ED ++VW++A
Sbjct: 363 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 30/227 (13%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKG-LIYDGKSGEKIGEFSSE-------DGHHGSIYA 240
H VN R+ P + +I+ + L++D E S E GH Y
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186
Query: 241 VSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRVI--KTFASSTSNAVEDMLVGCLWQND 297
+SW+P+ +L+ S D + +W+I RVI K + + VED+ W
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV----AW--- 239
Query: 298 HLITVSLGG--------IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349
HL+ SL G +I +N K + H V+ L+ S+ + + S D
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 350 GAIIKW-IRGVG---YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392
+ W +R + +S + K +++ E ++ ++G D ++
Sbjct: 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 23/146 (15%)
Query: 48 KPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRID 106
KP H H V ++P E+I A+ +V +W N + + F+ I
Sbjct: 268 KPSHT--VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 325
Query: 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWD-----SGTTVGDFD-----------GHSRRV 150
+QWSP I+A G + R +WD + D + GH+ ++
Sbjct: 326 QVQWSPHNETILASS-GTDR---RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 151 LSCEFKPTRPFRIATCGEDFLVNFYE 176
+ P P+ I + ED ++ ++
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVWQ 407
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDG 202
D H+ V F P F +AT D V ++ K KL S H + + +++SP
Sbjct: 278 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 337
Query: 203 SKLISVS-SDRKGLIYD-GKSGEKIGEFSSED----------GHHGSIYAVSWSPDGKKV 250
+++ S +DR+ ++D K GE+ +ED GH I SW+P+ +
Sbjct: 338 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 397
Query: 251 L-TVSADKSAKVWEILED 267
+ +VS D +VW++ E+
Sbjct: 398 ICSVSEDNIMQVWQMAEN 415
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 464 EAIVG--GQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVS-MFASADGNREAI 519
E++ G + KL I+ + NT ++ H + + ++P + A+ ++
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 520 VWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIGKPASSRITIKN 578
+WD + ++KL++ H I + WSP + T++A+ D + ++++ K + T ++
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST-ED 366
Query: 579 AHLGG-----VYG--VAFMDDFN--------VVSSGEDACIRVWRLA 610
A G ++G A + DF+ + S ED ++VW++A
Sbjct: 367 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 30/227 (13%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKG-LIYDGKSGEKIGEFSSE-------DGHHGSIYA 240
H VN R+ P + +I+ + L++D E S E GH Y
Sbjct: 131 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 190
Query: 241 VSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRVI--KTFASSTSNAVEDMLVGCLWQND 297
+SW+P+ +L+ S D + +W+I RVI K + + VED+ W
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV----AW--- 243
Query: 298 HLITVSLGG--------IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349
HL+ SL G +I +N K + H V+ L+ S+ + + S D
Sbjct: 244 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 303
Query: 350 GAIIKW-IRGVG---YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392
+ W +R + +S + K +++ E ++ ++G D ++
Sbjct: 304 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 23/146 (15%)
Query: 48 KPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRID 106
KP H H V ++P E+I A+ +V +W N + + F+ I
Sbjct: 272 KPSHT--VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 329
Query: 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWD-----SGTTVGDFD-----------GHSRRV 150
+QWSP I+A G + R +WD + D + GH+ ++
Sbjct: 330 QVQWSPHNETILASS-GTDR---RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 151 LSCEFKPTRPFRIATCGEDFLVNFYE 176
+ P P+ I + ED ++ ++
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVWQ 411
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDG 202
D H+ V F P F +AT D V ++ K KL S H + + +++SP
Sbjct: 270 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 329
Query: 203 SKLISVS-SDRKGLIYD-GKSGEKIGEFSSED----------GHHGSIYAVSWSPDGKKV 250
+++ S +DR+ ++D K GE+ +ED GH I SW+P+ V
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV 389
Query: 251 L-TVSADKSAKVWEILED 267
+ +VS D +VW++ E+
Sbjct: 390 ICSVSEDNIMQVWQMAEN 407
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 464 EAIVG--GQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSPDVS-MFASADGNREAI 519
E++ G + KL I+ S NT ++ H + + ++P + A+ ++
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 520 VWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIGKPASSRITIKN 578
+WD + ++KL++ H I + WSP + T++A+ D + ++++ K + + ++
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ-SPED 358
Query: 579 AHLGG-----VYG--VAFMDDFN--------VVSSGEDACIRVWRLA 610
A G ++G A + DF+ + S ED ++VW++A
Sbjct: 359 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 207 SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL-TVSADKSAKVWEI 264
SV+ D+K +I+D +S S D H + +S++P + +L T SADK+ +W++
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 58 HGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116
H V ++P E+I A+ +V +W N + + F+ I +QWSP
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 331
Query: 117 IVACGDGKGKSFVRAFMWDSGTTVGDFD-----------------GHSRRVLSCEFKPTR 159
I+A G + R +WD + +G+ GH+ ++ + P
Sbjct: 332 ILASS-GTDR---RLNVWDL-SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNE 386
Query: 160 PFRIATCGEDFLVNFYE 176
P+ I + ED ++ ++
Sbjct: 387 PWVICSVSEDNIMQVWQ 403
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Query: 130 RAFMWDSGTTVGD-----FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
+ +WD+ + D H+ V F P F +AT D V ++ K KL
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 185 SHRE-HSNFVNCIRFSPDGSKLISVS-SDRKGLIYD-GKSGEKIGEFSSED--------- 232
E H + + + +SP +++ S +DR+ ++D K GE+ +ED
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 233 -GHHGSIYAVSWSPDGKKVL-TVSADKSAKVWEILED 267
GH I SW+P+ V+ +VS D ++W++ E+
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 464 EAIVG--GQNGKLHIYSISGNTLTE-EMVLEKHRGAITVIQYSPDVS-MFASADGNREAI 519
E++ G + KL I+ NT ++ +++ H + + ++P + A+ ++
Sbjct: 242 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 520 VWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIGKPASSRITIKN 578
+WD + ++KL+ H I + WSP + T++A+ D + ++++ K + + ++
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ-SAED 360
Query: 579 AHLGG-----VYG--VAFMDDFN--------VVSSGEDACIRVWRLA 610
A G ++G A + DF+ + S ED +++W++A
Sbjct: 361 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 207 SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL-TVSADKSAKVWEI 264
SV+ D+K +I+D +S D H + +S++P + +L T SADK+ +W++
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 23/146 (15%)
Query: 48 KPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRID 106
KP H+ H V ++P E+I A+ +V +W N + + F+ I
Sbjct: 266 KPSHL--VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIF 323
Query: 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWD--------SGTTVGD--------FDGHSRRV 150
+ WSP I+A G + R +WD S D GH+ ++
Sbjct: 324 QVHWSPHNETILASS-GTDR---RLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 151 LSCEFKPTRPFRIATCGEDFLVNFYE 176
+ P P+ I + ED ++ ++
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIMQIWQ 405
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 143 FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDG 202
GH V F P + + ED + ++ F+ + + H++ V I F G
Sbjct: 104 LSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVW 262
L S S+D ++D + E I + GH ++ +VS P+G +++ S DK+ K+W
Sbjct: 163 KLLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 263 EILEDGSGGRVIKTFA 278
E+ G +KTF
Sbjct: 220 EV----QTGYCVKTFT 231
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 133 MWDSGTTVGDFD----GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE 188
+WD T GDF+ GH+ V F + +A+C D + ++ F+ +
Sbjct: 134 VWDYET--GDFERTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQGFECIRTMHG 190
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
H + V+ + P+G ++S S D+ +++ ++G + F+ GH + V + DG
Sbjct: 191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT---GHREWVRMVRPNQDGT 247
Query: 249 KVLTVSADKSAKVW 262
+ + S D++ +VW
Sbjct: 248 LIASCSNDQTVRVW 261
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 40/244 (16%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H V + +G+ +AS ++++W GF + + P+G I
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFR----IATCGEDFLVN 173
V+ K ++ + +G V F GH V + RP + IA+C D V
Sbjct: 208 VSASRDKT---IKMWEVQTGYCVKTFTGHREWV-----RMVRPNQDGTLIASCSNDQTVR 259
Query: 174 FYEGPPFKFKLSHREHSNFVNCIRFSPD--------------------GSKLISVSSDRK 213
+ + K REH + V CI ++P+ G L+S S D+
Sbjct: 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273
++D +G + GH + V + GK +L+ + DK+ +VW D R
Sbjct: 320 IKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGKFILSCADDKTLRVW----DYKNKRC 372
Query: 274 IKTF 277
+KT
Sbjct: 373 MKTL 376
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/176 (18%), Positives = 72/176 (40%), Gaps = 26/176 (14%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
V++ +I P+G + ++ + ++ + + HR + +++ + D ++ AS
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWVRMVRPNQDGTLIASC 252
Query: 513 DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST--------------------MV 552
++ VW +KE K + H + C++W+P S+ +
Sbjct: 253 SNDQTVRVWVVATKECKA-ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311
Query: 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIRVW 607
+GS D + ++++ + H V GV F ++S +D +RVW
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 36/230 (15%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H + V+ PNG+ I SA ++++W G+ +K F + ++ + DG I
Sbjct: 191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQDGTLI 249
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSC-EFKPTRPFRI---ATCGEDFLVN 173
+C + + VR ++ + + H R V+ C + P + AT E
Sbjct: 250 ASCSNDQT---VRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSE----T 301
Query: 174 FYEGPPFKFKLSHRE--------------------HSNFVNCIRFSPDGSKLISVSSDRK 213
G P F LS H N+V + F G ++S + D+
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
++D K+ + + H + ++ + V+T S D++ KVWE
Sbjct: 362 LRVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 486 EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAW 545
E+ L HR +T + + P S+ SA + VWD + + + + HT + +++
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISF 158
Query: 546 SPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACI 604
S ++A+ S D + +++ I + H V V+ M + + +VS+ D I
Sbjct: 159 DHSGKLLASCSADMTIKLWDF--QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 605 RVWRLAT 611
++W + T
Sbjct: 217 KMWEVQT 223
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ--WSPDGL 115
H V+ S NG + SA S+R+W NG + ++K L D L +SPD
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG---QCQYKFLGHTKDVLSVAFSPDNR 122
Query: 116 RIVACGDGKGKSFVRAFMWD-SGTTVGDFD--GHSRRVLSCEFKPT--RPFRIATCGEDF 170
+IV+ G +W+ G + H+ V F P+ P I + G D
Sbjct: 123 QIVSGGRDNALR-----VWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDN 176
Query: 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL--IYDGKSGEKIGEF 228
LV ++ + + H+N+V + SPDGS + SSD+ G+ ++D GE + E
Sbjct: 177 LVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS--LCASSDKDGVARLWDLTKGEALSEM 234
Query: 229 SS 230
++
Sbjct: 235 AA 236
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 449 LGFT--VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-- 504
LG T V + A +PD + + GG++ L ++++ G + + H ++ +++SP
Sbjct: 106 LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECM-HTLSRGAHTDWVSCVRFSPSL 164
Query: 505 DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564
D + S + VWD + + + ++ HT + + SP ++ A+ D ++
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRL-VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Query: 565 EIGK 568
++ K
Sbjct: 224 DLTK 227
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 490 LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS 549
LE H ++ + S + + SA + +W+ + + + L HT + +A+SP +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDN 121
Query: 550 TMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAF---MDDFNVVSSGEDACIRV 606
+ +G D + ++ + K + AH V V F +D +VS G D ++V
Sbjct: 122 RQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 607 WRLAT 611
W LAT
Sbjct: 181 WDLAT 185
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520
D + GG + + ++ ++ L + L+ H +T + SPD S+ AS+D + A +
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTD--LKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 521 WDRVSKEVKLNNMLFHTARINCLAWSPS 548
WD ++K L+ M A IN + +SP+
Sbjct: 223 WD-LTKGEALSEMAA-GAPINQICFSPN 248
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 487 EMVLEKHRGAITVI---QYSPDVSMFASADGNREAIVW----DRVSKEVKL----NNMLF 535
E L HRG +T + Q + S ++ + W DR S E +
Sbjct: 6 EGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFN 594
H+A ++ +A S + + S D + ++ + + H V VAF D+
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--GHTKDVLSVAFSPDNRQ 123
Query: 595 VVSSGEDACIRVWRLATE 612
+VS G D +RVW + E
Sbjct: 124 IVSGGRDNALRVWNVKGE 141
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
HS+FV + S DG +S S D + ++D +G F GH + +V++S D +
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNR 485
Query: 249 KVLTVSADKSAKVWEIL--------EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300
++++ S D++ K+W L E G G R + + N ++ +V W
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK---- 541
Query: 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355
+ +++ SN K + +GH VST+ A+ S DG ++ W
Sbjct: 542 ------TVKVWNLSNC-KLRSTLAGHTGYVSTV-AVSPDGSLCASGGKDGVVLLW 588
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG-PPFKFKLSH--R 187
+WD +G + F GH++ VLS F +I + D + + K+ +S
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGE 514
Query: 188 EHSNFVNCIRFSPDGSK--LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
H ++V+C+RFSP+ + ++S S D+ +++ S K+ S+ GH G + V+ SP
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN-LSNCKLR--STLAGHTGYVSTVAVSP 571
Query: 246 DGKKVLTVSADKSAKVWEILE 266
DG + D +W++ E
Sbjct: 572 DGSLCASGGKDGVVLLWDLAE 592
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
V ++ DG A+ G +G+L ++ ++ T V H + + +S D SA
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFSLDNRQIVSA 490
Query: 513 DGNREAIVWDRVS--KEVKLNNMLFHTARINCLAWSPSSTM--VATGSIDTCVIIYEIGK 568
+R +W+ + K H ++C+ +SP++ + + S D V ++ +
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 569 PASSRITIKNAHLGGVYGVAFMDDFNVVSS-GEDACIRVWRLA 610
R T+ H G V VA D ++ +S G+D + +W LA
Sbjct: 551 -CKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 7/208 (3%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H + V S +G++ S G +R+W G V F + + + +S D +I
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYE 176
V+ + T +GH V F P T I + D V +
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 177 GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236
K + + H+ +V+ + SPDGS S D L++D G+K+ + +
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA----NS 603
Query: 237 SIYAVSWSPDGKKVLTVSADKSAKVWEI 264
I+A+ +SP+ + L + + K+W++
Sbjct: 604 VIHALCFSPN-RYWLCAATEHGIKIWDL 630
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 491 EKHRGAITVIQYSPDV--SMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
E HR ++ +++SP+ SA ++ VW+ + +++ + + HT ++ +A SP
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPD 572
Query: 549 STMVATGSIDTCVIIYEIGK 568
++ A+G D V+++++ +
Sbjct: 573 GSLCASGGKDGVVLLWDLAE 592
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 490 LEKHRGAITVIQYSPD-VSMFASADGNREAIVW----DRVSKEVKLNNMLFHTARINCLA 544
+ H +T I D + SA ++ I+W D + V + H+ + +
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAF-MDDFNVVSSGEDAC 603
S +GS D + ++++ S+R + H V VAF +D+ +VS+ D
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 604 IRVWRLATE 612
I++W E
Sbjct: 496 IKLWNTLGE 504
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-HSNFVNCIRFSPDG 202
D H+ V F P F +AT D V ++ K KL E H + + + +SP
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHN 331
Query: 203 SKLISVS-SDRKGLIYD-GKSGEKIGEFSSED----------GHHGSIYAVSWSPDGKKV 250
+++ S +DR+ ++D K GE+ +ED GH I SW+P+ V
Sbjct: 332 ETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV 391
Query: 251 L-TVSADKSAKVWEILED 267
+ +VS D ++W+ E+
Sbjct: 392 ICSVSEDNIXQIWQXAEN 409
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 464 EAIVG--GQNGKLHIYSISGNTLTE-EMVLEKHRGAITVIQYSPDVS-MFASADGNREAI 519
E++ G + KL I+ NT ++ +++ H + + ++P + A+ ++
Sbjct: 242 ESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 520 VWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIGK 568
+WD + ++KL+ H I + WSP + T++A+ D + ++++ K
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 489 VLEKHRGAITVIQYSP-DVSMFASADGNREAIVWD--RVSKEVKLNN-------MLF--- 535
E H+ I + +SP + ++ AS+ +R VWD ++ +E + +LF
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHG 373
Query: 536 -HTARINCLAWSPSSTMV 552
HTA+I+ +W+P+ V
Sbjct: 374 GHTAKISDFSWNPNEPWV 391
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 23/146 (15%)
Query: 48 KPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRID 106
KP H+ H V ++P E+I A+ +V +W N + + F+ I
Sbjct: 266 KPSHL--VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIF 323
Query: 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWD--------SGTTVGD--------FDGHSRRV 150
+ WSP I+A G + R +WD S D GH+ ++
Sbjct: 324 QVHWSPHNETILASS-GTDR---RLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 151 LSCEFKPTRPFRIATCGEDFLVNFYE 176
+ P P+ I + ED + ++
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 207 SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL-TVSADKSAKVWEI 264
SV+ D+K I+D +S D H + +S++P + +L T SADK+ +W++
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 145 GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIR 197
GH+ VL + P IA+ ED V +E P L RE H+ V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 198 FSPDGSK-LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256
+ P L+S D L++D +G + D H +IY+V WS DG + T D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALICTSCRD 197
Query: 257 KSAKVWE 263
K +V E
Sbjct: 198 KRVRVIE 204
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 523 RVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIGK-----PASSRITI 576
RV K V L + HTA + +AW P + ++A+GS D V+++EI P +
Sbjct: 69 RVDKNVPL--VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 577 KNAHLGGVYGVAFMDDFN--VVSSGEDACIRVWRLAT 611
H V VA+ ++S+G D I VW + T
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGT 163
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 27/215 (12%)
Query: 74 IASADVSGSVRIWGTHNG-FVLKNEFKVLSGRIDDLQWSPD---GLRIVACGDGKGKSFV 129
+AS G V IW NG + V S ++ +QW+P L +VA DGK V
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS--V 127
Query: 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPT------------RPFRIATCGEDFLVNFY-- 175
F + T+ D H+ V S + P + T G D LV +
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 176 --EGPPFKFKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIY--DGKSGEKIGEF 228
+ + + + HS++V + +SP S L SVS DR +I+ D + G
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 247
Query: 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
E+ ++ SWS G + D +W+
Sbjct: 248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVW--DRVSKEVKLNNMLF-HTARINCLAW 545
++E H + + +S D A+ ++ +W D +E + ++L H+ + + W
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161
Query: 546 SPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDD---FNVVSSGEDA 602
PS ++A+ S D V I++ + + N H G V+ F F + S +D+
Sbjct: 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221
Query: 603 CIRVWR 608
+RVW+
Sbjct: 222 TVRVWK 227
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY-DGKSGEKIGE---FSSEDGHHGSIY 239
L H + + + P S L + S D I+ +S ++ E + +GH +
Sbjct: 52 LDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111
Query: 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283
V+WS DG + T S DKS +WE E G I + +
Sbjct: 112 GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYD-GKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247
H N V + +S DG L + S D+ I++ +SGE+ S H + V W P
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165
Query: 248 KKVLTVSADKSAKVWEILED 267
+ + S D + ++W+ +D
Sbjct: 166 ALLASSSYDDTVRIWKDYDD 185
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 27/215 (12%)
Query: 74 IASADVSGSVRIWGTHNG-FVLKNEFKVLSGRIDDLQWSPD---GLRIVACGDGKGKSFV 129
+AS G V IW NG + V S ++ +QW+P L +VA DGK V
Sbjct: 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS--V 129
Query: 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPT------------RPFRIATCGEDFLVNFY-- 175
F + T+ D H+ V S + P + T G D LV +
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 176 --EGPPFKFKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIY--DGKSGEKIGEF 228
+ + + + HS++V + +SP S L SVS DR +I+ D + G
Sbjct: 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 249
Query: 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
E+ ++ SWS G + D +W+
Sbjct: 250 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 145 GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIR 197
GH+ VL + P IA+ ED V +E P L RE H+ V +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 198 FSPDGSK-LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256
+ P L+S D L++D +G + D H +IY+V WS DG + T D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALICTSCRD 197
Query: 257 KSAKVWE 263
K +V E
Sbjct: 198 KRVRVIE 204
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 523 RVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIGK-----PASSRITI 576
RV K V L + HTA + +AW P + ++A+GS D V+++EI P +
Sbjct: 69 RVDKNVPL--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 577 KNAHLGGVYGVAFMDDFN--VVSSGEDACIRVWRLAT 611
H V VA+ ++S+G D I VW + T
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT 163
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 62 VTVARYSPNGEWIASADVSGSVRIW-----GTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116
V Y+P+G IA + ++ N K + + + ++ ++
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 117 IV-ACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRP---FRIATCGEDF 170
I+ A GDG +WD SG + F GH VL + P+ F C +
Sbjct: 169 ILTASGDGT------CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230
+V ++ + + H + VN +R+ P G S S D +YD ++ ++ +S
Sbjct: 223 MV--WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280
Query: 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
E G+ +V +S G+ + D + VW++L+ G RV F
Sbjct: 281 ESIIFGA-SSVDFSLSGRLLFAGYNDYTINVWDVLK---GSRVSILF 323
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK-----HRGAITVIQYSPDVS 507
V ACA AP G GG + K +Y ++ + E M +K H ++ ++
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDK-NENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 508 MFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST--MVATGSIDTCVIIYE 565
+A G+ +WD S ++ L + H A + CL +PS T +G D ++++
Sbjct: 168 QILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 566 IGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRL 609
+ + + H V V + + +SG +DA R++ L
Sbjct: 227 M--RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 6/158 (3%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS--MFA 510
++AC+ + + +G ++ + L + H + + +P + F
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFV 214
Query: 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPA 570
S +++A+VWD S + + H + +N + + PS A+GS D +Y++
Sbjct: 215 SGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVW 607
I K + + G V F ++ +G D I VW
Sbjct: 274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 27/215 (12%)
Query: 74 IASADVSGSVRIWGTHNG-FVLKNEFKVLSGRIDDLQWSPD---GLRIVACGDGKGKSFV 129
+AS G V IW NG + V S ++ +QW+P + +VA DGK V
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS--V 127
Query: 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPT------------RPFRIATCGEDFLVNFY-- 175
F + T+ D H+ V S + P + T G D LV +
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 176 --EGPPFKFKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIY--DGKSGEKIGEF 228
+ + + + HS++V + +SP S + SVS DR +I+ D + G
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL 247
Query: 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
E+ ++ SWS G + D +W+
Sbjct: 248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 27/218 (12%)
Query: 71 GEWIASADVSGSVRIWGTHNG-FVLKNEFKVLSGRIDDLQWSPD---GLRIVACGDGKGK 126
G +AS G V IW NG + V S ++ +QW+P L +VA DGK
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 127 SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT------------RPFRIATCGEDFLVNF 174
V F + T+ D H+ V S + P + T G D LV
Sbjct: 127 --VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 175 Y----EGPPFKFKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIY--DGKSGEKI 225
+ + + + + HS++V + +SP S L SVS DR +I+ D + G
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
E+ ++ SWS G + D +W+
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
+ +C + PDG IVGG+ L I+ ++ T + L A + SPD + S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 513 DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566
+ VWD + + + HT +C+ S T + TG +D V +++
Sbjct: 160 CSDGNIAVWD-LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 11/198 (5%)
Query: 68 SPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS 127
SP+ + S G++ +W HN +++ +F+ + + S DG ++ G +
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISNDGTKLWT---GGLDN 205
Query: 128 FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR 187
VR++ G + D + ++ S + PT + + + P K++L
Sbjct: 206 TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--H 262
Query: 188 EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247
H + V ++F+ G +S D + G I F S++ S+ + S D
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKES--SSVLSCDISVDD 318
Query: 248 KKVLTVSADKSAKVWEIL 265
K ++T S DK A V+E++
Sbjct: 319 KYIVTGSGDKKATVYEVI 336
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 21/171 (12%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
VT A + DG+ + G +NG+L +++ +G L VL HR I ++++ D + S
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLN---VLNFHRAPIVSVKWNKDGTHIISM 167
Query: 513 DGNREAIVWDRVSKEVKLNNMLFHT--ARINC------------LAWSPSSTMVATGSID 558
D I+W+ +S V + L T + IN + W V G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-K 226
Query: 559 TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIRVWR 608
+ +Y+I + + I H G + + F D ++S+ +D +R+W
Sbjct: 227 GAIFVYQITEKTPTGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238
PF S + +N V C+ +S DG+ +++ + + +++ K+G + + H I
Sbjct: 97 PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF---HRAPI 152
Query: 239 YAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF-----ASSTSNAVEDMLVGCL 293
+V W+ DG ++++ + +W ++ G V++ F S+ NA G L
Sbjct: 153 VSVKWNKDGTHIISMDVENVTILWNVIS----GTVMQHFELKETGGSSINAENHSGDGSL 208
Query: 294 -----WQNDHLITVSLGGIISIFSASNLDKAPL-SFSGHVKNVSTLTALKISQQTILSSS 347
W +D + G +IF +K P GH +S L + + +LS+S
Sbjct: 209 GVDVEWVDDDKFVIP-GPKGAIFVYQITEKTPTGKLIGHHGPISVL-EFNDTNKLLLSAS 266
Query: 348 YDGAIIKWIRGVGYSSK 364
DG + W G G S
Sbjct: 267 DDGTLRIWHGGNGNSQN 283
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292
GHHG I + ++ K +L+ S D + ++W G G F + + V VG
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWH----GGNGNSQNCFYGHSQSIVSASWVG- 299
Query: 293 LWQNDHLITVSLGGIISIFS 312
+D +I+ S+ G + ++S
Sbjct: 300 ---DDKVISCSMDGSVRLWS 316
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 32/199 (16%)
Query: 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP 112
+ G HG P++V ++ + + SA G++RIW NG +N F S I W
Sbjct: 242 KLIGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVG 299
Query: 113 DGLRIVACG-DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171
D ++++C DG VR + T + + + P RI+ G+ +
Sbjct: 300 DD-KVISCSMDGS----VRLWSLKQNTLLA--------LSIVDGVPIFAGRISQDGQKYA 346
Query: 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE 231
V F +G VN SK S+ +R G++ SS+
Sbjct: 347 VAFMDGQ--------------VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ 392
Query: 232 DGHHGSIYAVSWSPDGKKV 250
D + I+ +SW+ G K+
Sbjct: 393 DNDY--IFDLSWNCAGNKI 409
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 193 VNCIRFSPD---GSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
+ C+ FSP G+ LI+ S ++ + SG+ I + ++ H G + V WS DG
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGS 99
Query: 249 KVLTVSADKSAKVWEI 264
KV T S DK+AK+W++
Sbjct: 100 KVFTASCDKTAKMWDL 115
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 462 GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521
G+ I G + + + + T + H G + + +S D S +A ++ A +W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 522 DRVSKEVKLNNMLFHTARINCLAW--SPSSTMVATGSIDTCVIIYE 565
D S + + H A + + W +P+ + V TGS D + ++
Sbjct: 114 DLSSNQAI--QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 189 HSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247
H N +N ++F P D + L+SVS D +++ ++ + F +GH + + + G
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 168
Query: 248 KKVLTVSADKSAKVWEI 264
+K+++ D S K+W I
Sbjct: 169 EKIMSCGMDHSLKLWRI 185
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 189 HSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247
H N +N ++F P D + L+SVS D +++ ++ + F +GH + + + G
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 248 KKVLTVSADKSAKVWEI 264
+K+++ D S K+W I
Sbjct: 173 EKIMSCGMDHSLKLWRI 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 189 HSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247
H N +N ++F P D + L+SVS D +++ ++ + F +GH + + + G
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 248 KKVLTVSADKSAKVWEI 264
+K+++ D S K+W I
Sbjct: 173 EKIMSCGMDHSLKLWRI 189
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 189 HSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247
H N +N ++F P D + L+SVS D +++ ++ + F +GH + + + G
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173
Query: 248 KKVLTVSADKSAKVWEI 264
+K+++ D S K+W I
Sbjct: 174 EKIMSCGMDHSLKLWRI 190
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 189 HSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247
H N +N ++F P D + L+SVS D +++ ++ + F +GH + + + G
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 209
Query: 248 KKVLTVSADKSAKVWEI 264
+K+++ D S K+W I
Sbjct: 210 EKIMSCGMDHSLKLWRI 226
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 497 ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556
+ +++S D S + GN ++D V + KL M H AR+ CL+W + ++++GS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYD-VESQTKLRTMAGHQARVGCLSW--NRHVLSSGS 193
Query: 557 IDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDD-FNVVSSGEDACIRVW 607
+ +++ + A+ +I H V G+A+ D + S G D +++W
Sbjct: 194 RSGAIHHHDV-RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 87 GTHNGFVLKNEFKVLSGRIDDLQ----------WSPDGLRIVACGDGKGKSFVRAFMWDS 136
G+ +G + ++ ++ + +I LQ W DGL++ + G+ + V+ +WD+
Sbjct: 192 GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN---DNVVQ--IWDA 246
Query: 137 GTTVGDFD--GHSRRVLSCEFKPTRPFRIATCG--EDFLVNFYEGPPFKFKLSHREHSNF 192
+++ F H+ V + + P + +AT G D ++F+ +++ + +
Sbjct: 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA-TGARVNTVDAGSQ 305
Query: 193 VNCIRFSPDGSKLISVS--SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250
V + +SP +++S D I+ S + + H + + SPDG+ +
Sbjct: 306 VTSLIWSPHSKEIMSTHGFPDNNLSIW-SYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL 364
Query: 251 LTVSADKSAKVWEILEDGSGGRVI---KTFASS 280
T ++D++ K W + + R I KT +SS
Sbjct: 365 STAASDENLKFWRVYDGDHVKRPIPITKTPSSS 397
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
H + ++++ +G L S S D ++ +GE++G DGH G+I+++ K
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL---DGHTGTIWSIDVDCFTK 87
Query: 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279
+T SAD S K+W++ S G+ + T+ S
Sbjct: 88 YCVTGSADYSIKLWDV----SNGQCVATWKS 114
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 454 TACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV--LEKHRGAITVIQYSPDVSMFAS 511
T + G I G ++GK+ Y +S N E V ++ H +I+ +Q+SPD++ F +
Sbjct: 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFIT 235
Query: 512 ADGNREAIVWDRVSKEV 528
+ + + + D + +V
Sbjct: 236 SSRDTNSFLVDVSTLQV 252
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 42 LIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101
L + ++P+H E TVA +S G++I + G + + N + + +
Sbjct: 158 LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH 217
Query: 102 SGRIDDLQWSPD 113
I D+Q+SPD
Sbjct: 218 EKSISDMQFSPD 229
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGS-VRIWGTHNGFVLKNEFKVLSGR--IDDLQWSPDG 114
H PV + R + G+ +A+ G+ +R++ T NG VL EF+ R I D++WSPDG
Sbjct: 178 HANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNG-VLVREFRRGLDRTSIIDMRWSPDG 236
Query: 115 LRIVACGD 122
++ D
Sbjct: 237 SKLAVVSD 244
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 187 REHSNFVNCIRFSPDGSKLISVSSDRKGL-IYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
+ H+N V +R + G + + S D + ++ +G + EF SI + WSP
Sbjct: 176 KAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFR-RGLDRTSIIDMRWSP 234
Query: 246 DGKKVLTVSADKSAKVWEILEDGSGGR 272
DG K+ VS + V+E+ D R
Sbjct: 235 DGSKLAVVSDKWTLHVFEVFNDAENKR 261
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 74 IASADVSGSVRIWGTHNG-FVLKNEFKVLSGRIDDLQWSPDGL---RIVACGDGKGKSFV 129
+AS G V IW NG + V S ++ +QW+P +VA DGK V
Sbjct: 70 LASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVS--V 127
Query: 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPT------------RPFRIATCGEDFLVNFY-- 175
F + T+ D H+ V S + P + T G D LV +
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 176 --EGPPFKFKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIY--DGKSGEKIGEF 228
+ + + + HS++V + +SP S SVS DR +I+ D + G
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTL 247
Query: 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
E+ ++ SWS G + D +W+
Sbjct: 248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 25/163 (15%)
Query: 468 GGQNGKLHIYSISGNT--------LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519
GG NG++ I+ ++ T LT + I++ +FASA + A
Sbjct: 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS 191
Query: 520 VWD-RVSKEVKLNNMLFHTA-------RINCLAWSP-SSTMVATGS---IDTCVIIYEIG 567
+WD + KEV L +T+ +++ + W P +ST VAT + D ++I+++
Sbjct: 192 IWDLKAKKEVI---HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248
Query: 568 KPASSRITIKNAHLGGVYGVAF--MDDFNVVSSGEDACIRVWR 608
+ T+ H G+ + + D+ ++SSG D + +W
Sbjct: 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 43/241 (17%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFR-IATCGEDFLVNFYEGP----------- 178
+WD G F+GH+ V + + + I T D ++ ++ P
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 179 ---PFKFKLSHREHSNFVNCIR--------FSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227
P F + E+ FV +R S G+ ++S S D +++D + +
Sbjct: 247 HDYPLVFH-TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305
Query: 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287
S GH IY+ + + K+ ++ S D + ++W++ G ++ T T+
Sbjct: 306 LS---GHTDRIYSTIYDHERKRCISASMDTTIRIWDL----ENGELMYTLQGHTA----- 353
Query: 288 MLVGCLWQNDH-LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346
LVG L +D L++ + G I + A++ + FS H N+S +T +S ++S
Sbjct: 354 -LVGLLRLSDKFLVSAAADGSIRGWDANDYSR---KFSYHHTNLSAITTFYVSDNILVSG 409
Query: 347 S 347
S
Sbjct: 410 S 410
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 537 TARINCLAWSPSSTMVATGSIDTCVIIYE-IGKPASSRITIKNAHLGGVYGVAFMDDFNV 595
T+ I CL + + V TG+ D + +Y+ I K +++ H GGV+ + + +
Sbjct: 122 TSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLS---GHDGGVWALKYAHGGIL 176
Query: 596 VSSGEDACIRVW 607
VS D +RVW
Sbjct: 177 VSGSTDRTVRVW 188
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/307 (18%), Positives = 116/307 (37%), Gaps = 50/307 (16%)
Query: 58 HGYPVTVARYSPNGE-WIASADVSGSVRIWGT---HNGFVLKNEFKVLSGRIDDLQWSPD 113
H Y V ++ P+ S+ ++++W T V E V S + SP
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHM-----SPV 152
Query: 114 GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173
+ G V+ SG+ GH + +L+ + P + +AT D V
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG 233
++ +R + LI++ ++GK + + S+
Sbjct: 213 LWD-------------------VRRA--SGCLITLDQ------HNGKKSQAVE--SANTA 243
Query: 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML---- 289
H+G + + ++ DG +LTV D ++W +G + + +N+ + +
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLW---NSSNGENTLVNYGKVCNNSKKGLKFTVS 300
Query: 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349
GC + + V G I++++ + ++ + GH K V + + Q + S S D
Sbjct: 301 CGC---SSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVD-CCVFQSNFQELYSGSRD 355
Query: 350 GAIIKWI 356
I+ W+
Sbjct: 356 CNILAWV 362
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 72/222 (32%)
Query: 458 IAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK-----------HRGAITVIQYSP- 504
I P +G + GG +G + +Y + ++ + HR ++ +Q+ P
Sbjct: 51 IEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110
Query: 505 DVSMFASADGNREAIVWDRVS----------------------------------KEVKL 530
D MF S+ ++ VWD + +V+L
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 531 NNMLF---------HTARINCLAWSPS-STMVATGSIDTCVIIYEIGKPASSRITI---- 576
++ H I ++WSP ++AT S D+ V ++++ + + IT+
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 577 ----------KNAHLGGVYGVAFMDD-FNVVSSGEDACIRVW 607
AH G V G+ F D ++++ G D +R+W
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 43/241 (17%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFR-IATCGEDFLVNFYEGP----------- 178
+WD G F+GH+ V + + + I T D ++ ++ P
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 179 ---PFKFKLSHREHSNFVNCIR--------FSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227
P F + E+ FV +R S G+ ++S S D +++D + +
Sbjct: 247 HDYPLVFH-TPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI 305
Query: 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287
S GH IY+ + + K+ ++ S D + ++W++ G + T T+
Sbjct: 306 LS---GHTDRIYSTIYDHERKRCISASXDTTIRIWDL----ENGELXYTLQGHTA----- 353
Query: 288 MLVGCLWQNDH-LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346
LVG L +D L++ + G I + A++ + FS H N+S +T +S ++S
Sbjct: 354 -LVGLLRLSDKFLVSAAADGSIRGWDANDYSR---KFSYHHTNLSAITTFYVSDNILVSG 409
Query: 347 S 347
S
Sbjct: 410 S 410
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 537 TARINCLAWSPSSTMVATGSIDTCVIIYE-IGKPASSRITIKNAHLGGVYGVAFMDDFNV 595
T+ I CL + + V TG+ D + +Y+ I K +++ H GGV+ + + +
Sbjct: 122 TSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLS---GHDGGVWALKYAHGGIL 176
Query: 596 VSSGEDACIRVW 607
VS D +RVW
Sbjct: 177 VSGSTDRTVRVW 188
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 25/125 (20%)
Query: 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY 60
+ ++H+++ + +T + +G+ + IL G+ VLI+ H
Sbjct: 158 LGQIHITKLQSSGSATTQDQGV------QQKAIL---GKGVLIK------------AHTN 196
Query: 61 PVTVARYSPNGEWIASADVSGSV-RIWGTHNGFVLKNEFKVLSGRID--DLQWSPDGLRI 117
P+ + R + + +A+ G++ R++ T +G VL EF+ R D D++WS DG ++
Sbjct: 197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKWSTDGSKL 255
Query: 118 VACGD 122
D
Sbjct: 256 AVVSD 260
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 20/96 (20%)
Query: 187 REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG----------HHG 236
+ H+N + +R + + + S D G I F +EDG
Sbjct: 192 KAHTNPIKMVRLNRKSDMVATCSQD----------GTIIRVFKTEDGVLVREFRRGLDRA 241
Query: 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGR 272
+ + WS DG K+ VS + V+EI D R
Sbjct: 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR 277
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 178 PPFKFKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGL----IYDGKSGEKIGEFS-- 229
P + F+ H +SN + ++FSP GS L++++ D +Y+ + GE+IG S
Sbjct: 219 PLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVP 277
Query: 230 --------SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
E H + ++S++ G+ + + D + W++
Sbjct: 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 178 PPFKFKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGL----IYDGKSGEKIGEFS-- 229
P + F+ H +SN + ++FSP GS L++++ D +Y+ + GE+IG S
Sbjct: 229 PLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVP 287
Query: 230 --------SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
E H + ++S++ G+ + + D + W++
Sbjct: 288 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208
RV+ E I + G D +V + F+ + H++ +N + SPDG+ + S
Sbjct: 149 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 208
Query: 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246
D + ++++ + + + S++D ++++++SP+
Sbjct: 209 GKDGEIMLWNLAAKKAMYTLSAQD----EVFSLAFSPN 242
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
D + I++ G+ K V+A+ + DF GH+ + + P IA+ G+D +
Sbjct: 159 DSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEI 214
Query: 173 NFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKL-------ISVSSDRKGLIYDGKSGE 223
+ K + LS ++ V + FSP+ L I V S + D E
Sbjct: 215 MLWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE 271
Query: 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265
G + + H S+ +WS DG+ + D +VW+++
Sbjct: 272 FAGYSKAAEPHAVSL---AWSADGQTLFAGYTDNVIRVWQVM 310
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518
A D S I+ N K+ + + + N E H I + SPD ++ ASA + E
Sbjct: 156 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 214
Query: 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPS----STMVATG----SIDTCVIIYEIGKPA 570
++W+ +K+ L + LA+SP+ + ATG S+D ++ ++
Sbjct: 215 MLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 272
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
+ H +A+ D + +G D IRVW++ T
Sbjct: 273 AGYSKAAEPH---AVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHRE 188
+WD +G T F GH V+S + + I + D + + +G L H +
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 189 HSNFVNCIRFSP------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242
+V+ +R P D +IS +D+ ++ + +F GH+ +I ++
Sbjct: 144 ---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLT 197
Query: 243 WSPDGKKVLTVSADKSAKVWEI 264
SPDG + + D +W +
Sbjct: 198 ASPDGTLIASAGKDGEIMLWNL 219
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208
RV+ E I + G D +V + F+ + H++ +N + SPDG+ + S
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246
D + ++++ + + + S++D ++++++SP+
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD----EVFSLAFSPN 248
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
D + I++ G+ K V+A+ + DF GH+ + + P IA+ G+D +
Sbjct: 165 DSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEI 220
Query: 173 NFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKL-------ISVSSDRKGLIYDGKSGE 223
+ K + LS ++ V + FSP+ L I V S + D E
Sbjct: 221 MLWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265
G + + H S+ +WS DG+ + D +VW+++
Sbjct: 278 FAGYSKAAEPHAVSL---AWSADGQTLFAGYTDNVIRVWQVM 316
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518
A D S I+ N K+ + + + N E H I + SPD ++ ASA + E
Sbjct: 162 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPS----STMVATG----SIDTCVIIYEIGKPA 570
++W+ +K+ L + LA+SP+ + ATG S+D ++ ++
Sbjct: 221 MLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
+ H +A+ D + +G D IRVW++ T
Sbjct: 279 AGYSKAAEPH---AVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHRE 188
+WD +G T F GH V+S + + I + D + + +G L H +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 189 HSNFVNCIRFSP------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242
+V+ +R P D +IS +D+ ++ + +F GH+ +I ++
Sbjct: 150 ---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLT 203
Query: 243 WSPDGKKVLTVSADKSAKVWEI 264
SPDG + + D +W +
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208
RV+ E I + G D +V + F+ + H++ +N + SPDG+ + S
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246
D + ++++ + + + S++D ++++++SP+
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD----EVFSLAFSPN 248
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
D + I++ G+ K V+A+ + DF GH+ + + P IA+ G+D +
Sbjct: 165 DSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEI 220
Query: 173 NFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKL-------ISVSSDRKGLIYDGKSGE 223
+ K + LS ++ V + FSP+ L I V S + D E
Sbjct: 221 MLWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265
G + + H S+ +WS DG+ + D +VW+++
Sbjct: 278 FAGYSKAAEPHAVSL---AWSADGQTLFAGYTDNVIRVWQVM 316
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518
A D S I+ N K+ + + + N E H I + SPD ++ ASA + E
Sbjct: 162 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPS----STMVATG----SIDTCVIIYEIGKPA 570
++W+ +K+ L + LA+SP+ + ATG S+D ++ ++
Sbjct: 221 MLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
+ H +A+ D + +G D IRVW++ T
Sbjct: 279 AGYSKAAEPH---AVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHRE 188
+WD +G T F GH V+S + + I + D + + +G L H +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 189 HSNFVNCIRFSP------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242
+V+ +R P D +IS +D+ ++ + +F GH+ +I ++
Sbjct: 150 ---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLT 203
Query: 243 WSPDGKKVLTVSADKSAKVWEI 264
SPDG + + D +W +
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNL 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208
RV+ E I + G D +V + F+ + H++ +N + SPDG+ + S
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246
D + ++++ + + + S++D ++++++SP+
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD----EVFSLAFSPN 248
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 15/159 (9%)
Query: 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518
A D S I+ N K+ + + + N E H I + SPD ++ ASA + E
Sbjct: 162 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPS----STMVATG----SIDTCVIIYEIGKPA 570
++W+ +K+ L + LA+SP+ + ATG S+D ++ ++
Sbjct: 221 MLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWR 608
+ H +A+ D + +G D IRVW+
Sbjct: 279 AGYSKAAEPH---AVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
D + I++ G+ K V+A+ + DF GH+ + + P IA+ G+D +
Sbjct: 165 DSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEI 220
Query: 173 NFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKL-------ISVSSDRKGLIYDGKSGE 223
+ K + LS ++ V + FSP+ L I V S + D E
Sbjct: 221 MLWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
G + + H S+ +WS DG+ + D +VW+
Sbjct: 278 FAGYSKAAEPHAVSL---AWSADGQTLFAGYTDNVIRVWQ 314
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 133 MWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHRE 188
+WD +G T F GH V+S + + I + D + + +G L H +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 189 HSNFVNCIRFSP------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242
+V+ +R P D +IS +D+ ++ + +F GH+ +I ++
Sbjct: 150 ---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLT 203
Query: 243 WSPDGKKVLTVSADKSAKVWEI 264
SPDG + + D +W +
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 36/204 (17%)
Query: 187 REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246
+ H + + ++F P G LIS S D + I+ K G GH ++ ++
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 192
Query: 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306
G+ VL+ S D + ++WE G I TF N E+ G + I + +G
Sbjct: 193 GRNVLSASLDGTIRLWEC----GTGTTIHTF-----NRKENPHDGV-----NSIALFVGT 238
Query: 307 IISIFSASNLDKAPLSF--------SGHVKNVSTLTALKISQQTI-LSSSY--------- 348
+ S K L F +GHV V T+ + +QTI L S +
Sbjct: 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV 298
Query: 349 DGAIIKWIRGVGYSSKLEKKYDAR 372
DG +I GY + + ++D R
Sbjct: 299 DGNNANYIYA-GYENGMLAQWDLR 321
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDD-FN 594
H + I L + PS + + S D + I+ + ++ R I H V +A +D N
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIIDRGRN 195
Query: 595 VVSSGEDACIRVWRLAT 611
V+S+ D IR+W T
Sbjct: 196 VLSASLDGTIRLWECGT 212
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 36/204 (17%)
Query: 187 REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246
+ H + + ++F P G LIS S D + I+ K G GH ++ ++
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 189
Query: 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306
G+ VL+ S D + ++WE G I TF N E+ G + I + +G
Sbjct: 190 GRNVLSASLDGTIRLWEC----GTGTTIHTF-----NRKENPHDGV-----NSIALFVGT 235
Query: 307 IISIFSASNLDKAPLSF--------SGHVKNVSTLTALKISQQTI-LSSSY--------- 348
+ S K L F +GHV V T+ + +QTI L S +
Sbjct: 236 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV 295
Query: 349 DGAIIKWIRGVGYSSKLEKKYDAR 372
DG +I GY + + ++D R
Sbjct: 296 DGNNANYIYA-GYENGMLAQWDLR 318
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDD-FN 594
H + I L + PS + + S D + I+ + ++ R I H V +A +D N
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIIDRGRN 192
Query: 595 VVSSGEDACIRVWRLAT 611
V+S+ D IR+W T
Sbjct: 193 VLSASLDGTIRLWECGT 209
>pdb|2X7X|A Chain A, Fructose Binding Periplasmic Domain Of Hybrid Two
Component System Bt1754
pdb|2X7X|B Chain B, Fructose Binding Periplasmic Domain Of Hybrid Two
Component System Bt1754
Length = 325
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 469 GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528
G+ + + +SG+T +E+H+G + I PD+ + AD W+R E+
Sbjct: 127 GKGNIVELTGLSGSTPA----MERHQGFMAAISKFPDIKLIDKADA-----AWERGPAEI 177
Query: 529 KLNNMLFHTARINCL 543
++++ML +I+ +
Sbjct: 178 EMDSMLRRHPKIDAV 192
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-- 246
H + ++ + G++L + SSDR I+D ++G +I + GH G ++ V+W+
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMY 70
Query: 247 GKKVLTVSADKSAKVW 262
G + + S D+ +W
Sbjct: 71 GNILASCSYDRKVIIW 86
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 20/108 (18%)
Query: 143 FDGHSRRVLSCEF-KPTRPFRIATCGEDFLVNF--YEGPPFKFKLSHREHSNFVNCIRFS 199
D + R+ +C + + F + G+ + + +EGP ++ +H + N
Sbjct: 21 MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNI------- 73
Query: 200 PDGSKLISVSSDRKGLIYDGKSG--EKIGEFSSEDGHHGSIYAVSWSP 245
L S S DRK +I+ ++G EK E + GH S+ +V W+P
Sbjct: 74 -----LASCSYDRKVIIWREENGTWEKSHEHA---GHDSSVNSVCWAP 113
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 514 GNREAI--VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS 571
G+R+A VWD + + L+ ++ H A + C+ + V +G+ D V +++
Sbjct: 215 GSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWD--PETE 269
Query: 572 SRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611
+ + H VY + F D +VVS D IRVW + T
Sbjct: 270 TCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVET 308
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
H++ V C+ +++S S D ++D ++G+ + GH ++ V + DG+
Sbjct: 198 HTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLM---GHVAAVRCVQY--DGR 250
Query: 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308
+V++ + D KVW D + T T+ G H+++ SL I
Sbjct: 251 RVVSGAYDFMVKVW----DPETETCLHTLQGHTNRVYSLQFDGI-----HVVSGSLDTSI 301
Query: 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK- 367
++ + +GH S + +++ ++S + D + W G + +
Sbjct: 302 RVWDVET-GNCIHTLTGH---QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 368 --KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401
K+ + + CL + + T+ D V L GE
Sbjct: 358 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 172 VNFYE--GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK 220
V YE G +K + +H V C+ ++P +++++ S DR +Y+ +
Sbjct: 35 VELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175
R+V GD G + G + + H ++V P + +AT D V +
Sbjct: 222 RMVVTGDNVGNVILLNM---DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 278
Query: 176 E------GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE-KIGEF 228
+ F + L HR VN FSPDG++L++ + +Y + +G
Sbjct: 279 DLRQVRGKASFLYSLPHRHP---VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335
Query: 229 SSEDGH--HGSIYAVSWSP 245
H H + +W P
Sbjct: 336 PHPHRHFQHLTPIKAAWHP 354
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175
R+V GD G + G + + H ++V P + +AT D V +
Sbjct: 222 RMVVTGDNVGNVILLNM---DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 278
Query: 176 E------GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE-KIGEF 228
+ F + L HR VN FSPDG++L++ + +Y + +G
Sbjct: 279 DLRQVRGKASFLYSLPHRHP---VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335
Query: 229 SSEDGH--HGSIYAVSWSP 245
H H + +W P
Sbjct: 336 PHPHRHFQHLTPIKAAWHP 354
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175
R+V GD G + G + + H ++V P + +AT D V +
Sbjct: 223 RMVVTGDNVGNVILLNM---DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 279
Query: 176 E------GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE-KIGEF 228
+ F + L HR VN FSPDG++L++ + +Y + +G
Sbjct: 280 DLRQVRGKASFLYSLPHRHP---VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 336
Query: 229 SSEDGH--HGSIYAVSWSP 245
H H + +W P
Sbjct: 337 PHPHRHFQHLTPIKAAWHP 355
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 234 HHGSIY---AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290
H+ S++ VS+S + K LT SADK+ K+W+ +VIKTF+ ++ V + V
Sbjct: 141 HNASVWDAKVVSFSEN--KFLTASADKTIKLWQ------NDKVIKTFSGIHNDVVRHLAV 192
Query: 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGH 326
+ H I+ S G+I + D ++ GH
Sbjct: 193 V---DDGHFISCSNDGLIKLVDXHTGD-VLRTYEGH 224
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 165 TCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG 222
+C D L+ + ++ H +FV CI+ P+G ++S DR I+ ++G
Sbjct: 200 SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENG 256
>pdb|1COT|A Chain A, X-Ray Structure Of The Cytochrome C2 Isolated From
Paracoccus Denitrificans Refined To 1.7 Angstroms
Resolution
Length = 129
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS 507
APDG++ I GG+ G ++Y + G + E + G + V + +PD++
Sbjct: 23 APDGTDIIKGGKTGP-NLYGVVGRKIASEEGFKYGEGILEVAEKNPDLT 70
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208
RV+ E I + G D V + F+ + H++ +N + SPDG+ + S
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246
D + +++ + + S++D ++++++SP+
Sbjct: 215 GKDGEIXLWNLAAKKAXYTLSAQD----EVFSLAFSPN 248
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 19/161 (11%)
Query: 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
D + I++ G+ K V+A+ + DF GH+ + + P IA+ G+D +
Sbjct: 165 DSVTIISAGNDKX---VKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEI 220
Query: 173 NFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKL-------ISVSSDRKGLIYDGKSGE 223
+ K + LS ++ V + FSP+ L I V S + D E
Sbjct: 221 XLWNLAAKKAXYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
G + + H S+ +WS DG+ + D +VW++
Sbjct: 278 FAGYSKAAEPHAVSL---AWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 15/162 (9%)
Query: 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518
A D S I+ N K + + + N E H I + SPD ++ ASA + E
Sbjct: 162 ADDDSVTIISAGNDKX-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPS----STMVATG----SIDTCVIIYEIGKPA 570
+W+ +K K L + LA+SP+ + ATG S+D ++ ++
Sbjct: 221 XLWNLAAK--KAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 571 SSRITIKNAHLGGVYGVAFMDDFNVVSSG-EDACIRVWRLAT 611
+ H +A+ D + +G D IRVW++ T
Sbjct: 279 AGYSKAAEPH---AVSLAWSADGQTLFAGYTDNVIRVWQVXT 317
>pdb|3L6U|A Chain A, Crystal Structure Of Abc-Type Sugar Transport System,
Periplasmic Component From Exiguobacterium Sibiricum
pdb|3L6U|B Chain B, Crystal Structure Of Abc-Type Sugar Transport System,
Periplasmic Component From Exiguobacterium Sibiricum
Length = 293
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 491 EKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528
E+HRG + I+ P +S+ S GN + + +RV ++V
Sbjct: 152 ERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVXRQV 189
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS-SEDGHHGSIYAVSW-SPD 246
H + V+ + + G + + SSD+ ++ E S S H SI A+ W SP+
Sbjct: 8 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 67
Query: 247 -GKKVLTVSADKSAKVWE 263
G+ + + S DK+ K+WE
Sbjct: 68 YGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS-SEDGHHGSIYAVSW-SPD 246
H + V+ + + G + + SSD+ ++ E S S H SI A+ W SP+
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 247 -GKKVLTVSADKSAKVWE 263
G+ + + S DK+ K+WE
Sbjct: 70 YGRIIASASYDKTVKLWE 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS-SEDGHHGSIYAVSW-SPD 246
H + V+ + + G + + SSD+ ++ E S S H SI A+ W SP+
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 247 -GKKVLTVSADKSAKVWE 263
G+ + + S DK+ K+WE
Sbjct: 70 YGRIIASASYDKTVKLWE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,218,708
Number of Sequences: 62578
Number of extensions: 825526
Number of successful extensions: 3352
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2231
Number of HSP's gapped (non-prelim): 602
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)