Query 007229
Match_columns 612
No_of_seqs 953 out of 2223
Neff 12.4
Searched_HMMs 46136
Date Thu Mar 28 20:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0318 WD40 repeat stress pro 100.0 2.9E-89 6.3E-94 588.3 67.0 599 1-610 1-602 (603)
2 KOG0319 WD40-repeat-containing 100.0 7.3E-67 1.6E-71 468.8 51.4 567 24-611 25-620 (775)
3 KOG0291 WD40-repeat-containing 100.0 2.1E-59 4.6E-64 421.6 59.1 543 2-612 3-614 (893)
4 KOG0319 WD40-repeat-containing 100.0 3.6E-60 7.7E-65 425.8 45.3 528 65-612 25-579 (775)
5 KOG0306 WD40-repeat-containing 100.0 2.8E-58 6E-63 414.2 52.1 566 27-611 31-665 (888)
6 KOG0318 WD40 repeat stress pro 100.0 3.1E-56 6.8E-61 384.6 57.5 528 15-567 56-602 (603)
7 KOG0271 Notchless-like WD40 re 100.0 1.8E-60 4E-65 394.1 28.5 367 15-565 112-479 (480)
8 KOG0271 Notchless-like WD40 re 100.0 5.5E-60 1.2E-64 391.3 30.2 368 137-608 105-479 (480)
9 KOG0291 WD40-repeat-containing 100.0 2.6E-52 5.7E-57 376.0 55.3 493 17-568 95-710 (893)
10 KOG0306 WD40-repeat-containing 100.0 7.4E-51 1.6E-55 366.5 46.7 535 18-568 65-665 (888)
11 KOG1408 WD40 repeat protein [F 100.0 2.1E-50 4.5E-55 361.6 43.2 552 4-610 27-713 (1080)
12 KOG2106 Uncharacterized conser 100.0 2.3E-45 5E-50 315.8 50.0 541 3-610 53-626 (626)
13 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-49 1.1E-53 330.8 23.0 281 16-356 173-458 (459)
14 KOG0286 G-protein beta subunit 100.0 1.7E-46 3.6E-51 300.3 33.2 289 52-522 48-343 (343)
15 KOG1063 RNA polymerase II elon 100.0 3.9E-45 8.4E-50 326.8 43.8 577 23-610 19-699 (764)
16 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-47 5.7E-52 320.5 23.9 282 57-396 173-458 (459)
17 KOG1408 WD40 repeat protein [F 100.0 1.2E-44 2.5E-49 324.9 41.6 505 15-568 75-714 (1080)
18 KOG0279 G protein beta subunit 100.0 1.3E-43 2.8E-48 281.9 32.4 295 11-358 8-313 (315)
19 KOG0276 Vesicle coat complex C 100.0 1.2E-42 2.7E-47 307.0 41.6 464 17-566 12-489 (794)
20 KOG0279 G protein beta subunit 100.0 2.1E-43 4.6E-48 280.7 31.5 291 139-611 7-314 (315)
21 KOG0315 G-protein beta subunit 100.0 2E-43 4.4E-48 275.9 30.1 295 159-590 9-309 (311)
22 KOG0292 Vesicle coat complex C 100.0 5.8E-41 1.3E-45 308.4 49.4 499 16-556 7-547 (1202)
23 KOG0286 G-protein beta subunit 100.0 1.4E-42 3.1E-47 277.8 32.2 285 15-356 52-343 (343)
24 KOG1539 WD repeat protein [Gen 100.0 2.3E-40 5E-45 302.7 50.3 556 24-608 39-646 (910)
25 KOG1539 WD repeat protein [Gen 100.0 3.6E-41 7.9E-46 307.9 44.4 488 30-568 124-649 (910)
26 KOG0296 Angio-associated migra 100.0 3.3E-42 7.1E-47 284.4 33.2 343 51-567 56-398 (399)
27 KOG0276 Vesicle coat complex C 100.0 5.9E-41 1.3E-45 296.5 42.0 462 53-610 7-490 (794)
28 KOG0315 G-protein beta subunit 100.0 4.7E-42 1E-46 268.3 30.9 298 71-546 10-309 (311)
29 KOG0273 Beta-transducin family 100.0 8E-42 1.7E-46 291.6 32.1 325 144-610 175-523 (524)
30 KOG0296 Angio-associated migra 100.0 6.5E-41 1.4E-45 276.8 30.9 335 137-610 54-398 (399)
31 KOG1063 RNA polymerase II elon 100.0 1.1E-38 2.4E-43 285.6 45.2 577 15-610 51-763 (764)
32 KOG0645 WD40 repeat protein [G 100.0 6.7E-40 1.5E-44 259.7 31.1 286 15-358 11-311 (312)
33 KOG0273 Beta-transducin family 100.0 3.3E-40 7.1E-45 281.8 31.3 334 55-567 174-523 (524)
34 KOG0295 WD40 repeat-containing 100.0 1.1E-40 2.3E-45 275.4 24.5 283 16-356 106-404 (406)
35 KOG0295 WD40 repeat-containing 100.0 1.3E-40 2.7E-45 274.9 24.7 304 138-566 99-405 (406)
36 KOG0265 U5 snRNP-specific prot 100.0 1.4E-39 3E-44 261.8 28.8 297 52-522 40-336 (338)
37 KOG0284 Polyadenylation factor 100.0 3.6E-41 7.9E-46 282.3 19.6 285 16-358 94-380 (464)
38 KOG2048 WD40 repeat protein [G 100.0 1.8E-36 3.9E-41 271.0 50.7 495 55-610 21-548 (691)
39 KOG0263 Transcription initiati 100.0 3.8E-40 8.3E-45 300.4 27.5 240 18-265 378-649 (707)
40 KOG0285 Pleiotropic regulator 100.0 1.4E-39 2.9E-44 268.2 25.7 298 51-481 143-440 (460)
41 KOG0645 WD40 repeat protein [G 100.0 5.1E-38 1.1E-42 249.0 31.7 282 51-398 6-311 (312)
42 KOG0292 Vesicle coat complex C 100.0 5.4E-37 1.2E-41 282.4 42.3 474 55-568 5-519 (1202)
43 KOG0263 Transcription initiati 100.0 2.2E-39 4.7E-44 295.5 26.2 282 53-528 372-653 (707)
44 KOG0284 Polyadenylation factor 100.0 6.9E-40 1.5E-44 274.6 18.6 285 58-401 95-383 (464)
45 KOG0293 WD40 repeat-containing 100.0 6.5E-39 1.4E-43 269.2 22.4 293 51-359 216-514 (519)
46 KOG2048 WD40 repeat protein [G 100.0 4.7E-34 1E-38 255.7 54.5 487 19-568 26-549 (691)
47 KOG0265 U5 snRNP-specific prot 100.0 7.9E-38 1.7E-42 251.7 27.0 289 183-609 40-337 (338)
48 KOG2106 Uncharacterized conser 100.0 8.3E-35 1.8E-39 251.1 46.9 487 15-566 101-625 (626)
49 KOG0293 WD40 repeat-containing 100.0 2.5E-38 5.5E-43 265.7 23.1 292 139-568 216-514 (519)
50 KOG0285 Pleiotropic regulator 100.0 9.7E-38 2.1E-42 257.3 25.7 286 15-314 148-439 (460)
51 KOG0282 mRNA splicing factor [ 100.0 1.2E-38 2.7E-43 273.3 19.0 294 137-565 204-503 (503)
52 KOG0316 Conserved WD40 repeat- 100.0 8.1E-37 1.8E-41 237.0 26.8 288 139-567 9-299 (307)
53 KOG0266 WD40 repeat-containing 100.0 1.6E-36 3.5E-41 286.6 34.2 294 54-524 153-454 (456)
54 KOG0281 Beta-TrCP (transducin 100.0 2E-38 4.3E-43 260.4 17.5 275 285-611 196-478 (499)
55 KOG0266 WD40 repeat-containing 100.0 1.6E-36 3.5E-41 286.6 32.7 283 18-358 159-454 (456)
56 KOG0282 mRNA splicing factor [ 100.0 4.9E-38 1.1E-42 269.7 19.9 297 50-522 205-503 (503)
57 KOG0281 Beta-TrCP (transducin 100.0 7.5E-38 1.6E-42 257.0 19.3 275 58-403 196-482 (499)
58 KOG0278 Serine/threonine kinas 100.0 8.4E-38 1.8E-42 244.7 18.3 288 141-568 8-298 (334)
59 cd00200 WD40 WD40 domain, foun 100.0 3.6E-35 7.8E-40 268.9 36.3 287 53-522 3-289 (289)
60 KOG0316 Conserved WD40 repeat- 100.0 3.5E-35 7.5E-40 228.0 27.0 277 51-389 9-291 (307)
61 PLN00181 protein SPA1-RELATED; 100.0 1.3E-34 2.8E-39 295.9 38.7 317 38-523 457-792 (793)
62 cd00200 WD40 WD40 domain, foun 100.0 3.5E-34 7.6E-39 262.4 37.0 282 16-356 7-289 (289)
63 KOG0313 Microtubule binding pr 100.0 8.1E-35 1.7E-39 242.1 25.9 290 48-398 95-418 (423)
64 KOG0278 Serine/threonine kinas 100.0 1.3E-35 2.7E-40 232.6 18.7 290 52-528 7-301 (334)
65 KOG0275 Conserved WD40 repeat- 100.0 5.5E-36 1.2E-40 244.0 17.0 288 100-522 211-507 (508)
66 KOG0277 Peroxisomal targeting 100.0 9.6E-35 2.1E-39 228.3 21.9 282 194-608 12-307 (311)
67 KOG0313 Microtubule binding pr 100.0 5.4E-34 1.2E-38 237.2 27.2 281 17-357 104-417 (423)
68 KOG0275 Conserved WD40 repeat- 100.0 3.5E-35 7.5E-40 239.3 18.6 287 57-356 211-507 (508)
69 PLN00181 protein SPA1-RELATED; 100.0 7.9E-33 1.7E-37 282.8 40.0 294 15-357 480-792 (793)
70 KOG0643 Translation initiation 100.0 5.8E-33 1.3E-37 220.0 27.0 294 142-611 5-318 (327)
71 KOG1407 WD40 repeat protein [F 100.0 8.1E-33 1.7E-37 218.4 26.3 277 141-558 14-293 (313)
72 KOG0283 WD40 repeat-containing 100.0 3.1E-33 6.6E-38 257.9 25.0 262 52-367 259-541 (712)
73 KOG0643 Translation initiation 100.0 2E-32 4.4E-37 216.9 25.8 302 14-359 6-318 (327)
74 KOG0647 mRNA export protein (c 100.0 6.3E-32 1.4E-36 218.1 26.1 275 145-556 25-312 (347)
75 KOG0640 mRNA cleavage stimulat 100.0 1.8E-32 4E-37 222.0 22.7 294 53-357 106-425 (430)
76 KOG0310 Conserved WD40 repeat- 100.0 3.6E-32 7.7E-37 234.3 25.2 282 58-480 25-309 (487)
77 KOG0973 Histone transcription 100.0 2.5E-32 5.3E-37 258.8 26.5 305 57-568 11-356 (942)
78 KOG0640 mRNA cleavage stimulat 100.0 3.8E-32 8.2E-37 220.2 22.4 299 141-567 106-426 (430)
79 KOG0277 Peroxisomal targeting 100.0 3.9E-32 8.4E-37 213.7 21.6 281 22-357 12-308 (311)
80 KOG0288 WD40 repeat protein Ti 100.0 3.1E-33 6.6E-38 235.3 16.3 292 50-521 166-458 (459)
81 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-30 9.2E-35 209.6 33.8 298 51-401 6-306 (311)
82 KOG0289 mRNA splicing factor [ 100.0 2.4E-31 5.1E-36 225.5 27.2 285 148-609 220-505 (506)
83 KOG0310 Conserved WD40 repeat- 100.0 1.8E-31 3.9E-36 230.0 26.8 286 11-357 20-308 (487)
84 KOG1445 Tumor-specific antigen 100.0 5.3E-31 1.1E-35 234.5 30.6 461 138-610 70-798 (1012)
85 KOG1446 Histone H3 (Lys4) meth 100.0 3.7E-30 8E-35 210.0 32.7 296 180-568 4-304 (311)
86 KOG0268 Sof1-like rRNA process 100.0 4.7E-33 1E-37 230.2 15.4 288 140-568 59-346 (433)
87 KOG0772 Uncharacterized conser 100.0 9.7E-32 2.1E-36 232.9 24.2 209 53-264 161-393 (641)
88 KOG0289 mRNA splicing factor [ 100.0 5.4E-31 1.2E-35 223.3 27.8 287 14-357 215-505 (506)
89 KOG0299 U3 snoRNP-associated p 100.0 2.5E-31 5.3E-36 227.3 25.8 315 52-521 135-453 (479)
90 KOG0288 WD40 repeat protein Ti 100.0 1.1E-32 2.3E-37 232.1 15.9 288 138-564 166-458 (459)
91 PTZ00421 coronin; Provisional 100.0 4E-30 8.7E-35 241.3 34.8 266 4-278 4-299 (493)
92 KOG0973 Histone transcription 100.0 4.6E-31 9.9E-36 250.3 28.3 208 18-254 13-238 (942)
93 KOG0274 Cdc4 and related F-box 100.0 9.3E-31 2E-35 245.4 30.2 279 58-403 207-487 (537)
94 KOG0772 Uncharacterized conser 100.0 2.6E-31 5.6E-36 230.3 24.3 312 180-607 157-484 (641)
95 KOG0268 Sof1-like rRNA process 100.0 2.2E-32 4.9E-37 226.2 16.6 284 183-610 59-345 (433)
96 KOG1407 WD40 repeat protein [F 100.0 2.1E-30 4.6E-35 204.8 25.8 285 232-611 17-312 (313)
97 KOG0283 WD40 repeat-containing 100.0 2.4E-31 5.2E-36 245.5 23.9 304 183-568 259-577 (712)
98 KOG0305 Anaphase promoting com 100.0 1.7E-30 3.6E-35 233.6 27.9 277 21-360 180-463 (484)
99 KOG1445 Tumor-specific antigen 100.0 3.3E-29 7.2E-34 223.1 35.2 230 29-264 42-292 (1012)
100 KOG0274 Cdc4 and related F-box 100.0 3.3E-30 7.1E-35 241.7 30.5 279 18-321 208-489 (537)
101 KOG0641 WD40 repeat protein [G 100.0 5.5E-29 1.2E-33 192.6 31.4 289 16-358 30-349 (350)
102 KOG0308 Conserved WD40 repeat- 100.0 2.1E-31 4.5E-36 237.6 20.3 355 58-529 20-398 (735)
103 KOG0305 Anaphase promoting com 100.0 2.3E-30 4.9E-35 232.7 24.8 238 18-264 217-460 (484)
104 KOG0641 WD40 repeat protein [G 100.0 1.4E-28 3.1E-33 190.3 31.1 292 146-567 31-349 (350)
105 KOG0300 WD40 repeat-containing 100.0 1.5E-30 3.3E-35 211.7 21.3 339 162-611 126-477 (481)
106 PTZ00421 coronin; Provisional 100.0 5.1E-29 1.1E-33 233.9 34.3 286 58-398 19-331 (493)
107 KOG0300 WD40 repeat-containing 100.0 4.3E-30 9.3E-35 209.1 22.6 296 94-527 140-479 (481)
108 KOG1036 Mitotic spindle checkp 100.0 3.3E-29 7.1E-34 203.3 27.5 272 189-557 12-294 (323)
109 KOG2096 WD40 repeat protein [G 100.0 5.5E-29 1.2E-33 202.7 25.9 308 41-356 63-400 (420)
110 KOG0299 U3 snoRNP-associated p 100.0 4.7E-29 1E-33 213.4 26.0 242 16-264 140-409 (479)
111 KOG1963 WD40 repeat protein [G 100.0 7.1E-27 1.5E-31 216.9 40.9 500 22-610 20-583 (792)
112 KOG0294 WD40 repeat-containing 100.0 3.8E-28 8.1E-33 197.6 27.6 246 96-361 37-284 (362)
113 KOG0308 Conserved WD40 repeat- 100.0 1.3E-29 2.8E-34 226.2 20.7 242 16-264 19-284 (735)
114 PTZ00420 coronin; Provisional 100.0 1.2E-27 2.6E-32 225.2 34.7 233 26-264 34-292 (568)
115 KOG1538 Uncharacterized conser 100.0 5.8E-28 1.3E-32 216.6 30.7 459 20-553 14-511 (1081)
116 KOG0301 Phospholipase A2-activ 100.0 1.7E-28 3.6E-33 220.9 27.0 284 49-402 4-292 (745)
117 KOG0646 WD40 repeat protein [G 100.0 1.8E-28 3.9E-33 210.3 25.3 294 129-549 20-331 (476)
118 KOG2096 WD40 repeat protein [G 100.0 4.4E-28 9.6E-33 197.5 26.2 300 185-608 81-400 (420)
119 PTZ00420 coronin; Provisional 100.0 1.2E-27 2.6E-32 225.2 32.9 250 77-383 50-319 (568)
120 KOG0301 Phospholipase A2-activ 100.0 2.4E-28 5.1E-33 219.9 26.7 285 1-360 1-290 (745)
121 KOG1274 WD40 repeat protein [G 100.0 3.4E-25 7.5E-30 206.4 46.8 241 16-264 11-261 (933)
122 KOG0647 mRNA export protein (c 100.0 1.1E-27 2.5E-32 193.7 25.4 272 188-597 25-310 (347)
123 KOG1036 Mitotic spindle checkp 100.0 6.7E-27 1.4E-31 190.0 28.1 282 146-514 12-294 (323)
124 KOG2055 WD40 repeat protein [G 100.0 1.6E-27 3.6E-32 204.1 24.6 287 147-567 213-512 (514)
125 KOG0269 WD40 repeat-containing 100.0 4.7E-28 1E-32 220.8 20.7 287 235-606 39-336 (839)
126 KOG0639 Transducin-like enhanc 100.0 8.4E-28 1.8E-32 208.1 21.1 240 16-264 417-662 (705)
127 KOG0264 Nucleosome remodeling 100.0 1.2E-27 2.5E-32 205.0 21.5 264 233-610 122-404 (422)
128 KOG1332 Vesicle coat complex C 100.0 8.7E-28 1.9E-32 188.2 18.9 246 16-264 9-285 (299)
129 KOG0264 Nucleosome remodeling 100.0 3.9E-27 8.5E-32 201.8 22.3 261 57-359 122-405 (422)
130 KOG1332 Vesicle coat complex C 100.0 2.5E-27 5.3E-32 185.7 18.9 257 186-570 7-289 (299)
131 KOG0639 Transducin-like enhanc 100.0 2.5E-27 5.5E-32 205.1 20.4 282 188-566 417-703 (705)
132 KOG4283 Transcription-coupled 100.0 3.2E-26 7E-31 184.6 25.3 320 55-523 39-364 (397)
133 KOG0321 WD40 repeat-containing 100.0 7.9E-27 1.7E-31 208.1 23.1 342 153-590 55-426 (720)
134 KOG0646 WD40 repeat protein [G 100.0 2E-26 4.2E-31 197.9 24.0 294 39-378 18-327 (476)
135 KOG2055 WD40 repeat protein [G 100.0 4.4E-26 9.5E-31 195.4 25.6 287 102-524 213-512 (514)
136 KOG0294 WD40 repeat-containing 100.0 5.1E-26 1.1E-30 185.3 24.3 242 139-401 35-284 (362)
137 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.8E-24 3.9E-29 198.7 36.6 295 71-504 1-300 (300)
138 KOG1963 WD40 repeat protein [G 100.0 3.4E-23 7.3E-28 192.8 43.2 470 55-611 12-539 (792)
139 KOG4283 Transcription-coupled 99.9 1.6E-25 3.6E-30 180.6 23.9 301 144-566 40-364 (397)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-24 5.3E-29 197.8 34.7 286 162-590 3-299 (300)
141 KOG0650 WD40 repeat nucleolar 99.9 1.6E-25 3.4E-30 198.3 24.7 311 184-607 394-732 (733)
142 KOG1273 WD40 repeat protein [G 99.9 5.4E-25 1.2E-29 179.4 24.4 247 20-280 25-291 (405)
143 KOG1274 WD40 repeat protein [G 99.9 9.8E-25 2.1E-29 203.4 28.1 287 99-564 10-297 (933)
144 KOG4328 WD40 protein [Function 99.9 6.5E-25 1.4E-29 188.1 23.2 289 17-313 185-494 (498)
145 KOG0267 Microtubule severing p 99.9 5.4E-27 1.2E-31 212.2 10.6 232 17-256 27-259 (825)
146 KOG2445 Nuclear pore complex c 99.9 4.3E-24 9.3E-29 173.6 25.8 261 232-610 10-318 (361)
147 KOG0269 WD40 repeat-containing 99.9 1.8E-25 3.9E-30 204.1 20.1 288 18-359 39-341 (839)
148 KOG1273 WD40 repeat protein [G 99.9 2.4E-24 5.2E-29 175.6 24.4 293 150-526 26-324 (405)
149 KOG1034 Transcriptional repres 99.9 7.1E-25 1.5E-29 179.7 20.4 330 97-524 33-383 (385)
150 KOG0321 WD40 repeat-containing 99.9 1.7E-24 3.7E-29 193.4 24.0 300 57-362 45-395 (720)
151 KOG4378 Nuclear protein COP1 [ 99.9 1.6E-24 3.4E-29 187.7 22.7 287 81-506 12-305 (673)
152 KOG0650 WD40 repeat nucleolar 99.9 2.1E-24 4.5E-29 191.3 23.8 292 16-355 398-732 (733)
153 KOG1034 Transcriptional repres 99.9 1.7E-24 3.7E-29 177.6 20.9 266 55-362 34-341 (385)
154 KOG2445 Nuclear pore complex c 99.9 1.9E-23 4.2E-28 169.8 26.8 267 55-358 9-318 (361)
155 KOG4497 Uncharacterized conser 99.9 2.6E-24 5.5E-29 176.6 21.6 406 23-560 13-425 (447)
156 KOG1524 WD40 repeat-containing 99.9 3.2E-23 7E-28 181.5 28.9 436 32-568 78-524 (737)
157 KOG1009 Chromatin assembly com 99.9 2.2E-23 4.9E-28 176.1 25.8 165 59-264 13-194 (434)
158 KOG4378 Nuclear protein COP1 [ 99.9 5.9E-24 1.3E-28 184.1 22.2 236 20-264 36-279 (673)
159 KOG4328 WD40 protein [Function 99.9 1.3E-23 2.7E-28 180.3 23.9 305 137-568 176-496 (498)
160 COG2319 FOG: WD40 repeat [Gene 99.9 1.3E-20 2.8E-25 184.8 48.1 371 15-525 62-443 (466)
161 KOG1538 Uncharacterized conser 99.9 4.3E-22 9.2E-27 179.3 33.5 274 104-481 14-294 (1081)
162 KOG1912 WD40 repeat protein [G 99.9 1.7E-21 3.8E-26 178.5 37.6 545 8-609 7-740 (1062)
163 COG2319 FOG: WD40 repeat [Gene 99.9 2.4E-20 5.2E-25 183.0 47.3 373 54-568 60-443 (466)
164 KOG1524 WD40 repeat-containing 99.9 5.7E-22 1.2E-26 173.8 28.9 230 16-260 12-250 (737)
165 KOG0270 WD40 repeat-containing 99.9 1.1E-22 2.4E-27 173.9 23.7 283 63-403 129-454 (463)
166 KOG0302 Ribosome Assembly prot 99.9 1.5E-23 3.3E-28 175.2 17.2 163 449-612 210-380 (440)
167 KOG0302 Ribosome Assembly prot 99.9 5.4E-23 1.2E-27 172.0 20.1 204 55-265 147-378 (440)
168 KOG0267 Microtubule severing p 99.9 1E-24 2.2E-29 197.7 9.7 223 38-278 13-235 (825)
169 KOG1009 Chromatin assembly com 99.9 7E-22 1.5E-26 167.1 25.9 161 18-182 13-199 (434)
170 KOG2919 Guanine nucleotide-bin 99.9 1.8E-21 3.8E-26 159.7 24.2 281 191-599 50-359 (406)
171 KOG2919 Guanine nucleotide-bin 99.9 1.5E-21 3.3E-26 160.0 23.8 235 22-264 53-326 (406)
172 KOG0270 WD40 repeat-containing 99.9 4.2E-22 9.1E-27 170.5 18.6 231 29-264 191-448 (463)
173 KOG0322 G-protein beta subunit 99.9 3.7E-22 8E-27 158.8 16.3 312 139-566 6-322 (323)
174 KOG0322 G-protein beta subunit 99.9 8.3E-22 1.8E-26 156.8 16.4 288 318-609 5-322 (323)
175 KOG4497 Uncharacterized conser 99.9 5.3E-21 1.1E-25 157.3 21.5 374 107-602 13-424 (447)
176 KOG1188 WD40 repeat protein [G 99.9 6.7E-21 1.5E-25 157.6 20.7 281 32-357 42-345 (376)
177 KOG0307 Vesicle coat complex C 99.9 3.4E-22 7.4E-27 191.6 15.2 289 151-568 10-328 (1049)
178 KOG0649 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 143.0 23.5 235 61-315 12-275 (325)
179 KOG1007 WD repeat protein TSSC 99.9 1.9E-20 4.2E-25 151.1 19.8 244 16-264 61-360 (370)
180 KOG0307 Vesicle coat complex C 99.9 9.1E-22 2E-26 188.7 14.4 286 64-402 11-331 (1049)
181 KOG1188 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 156.0 18.8 277 116-479 42-345 (376)
182 KOG1007 WD repeat protein TSSC 99.9 8.9E-20 1.9E-24 147.3 23.0 293 38-358 39-361 (370)
183 KOG1517 Guanine nucleotide bin 99.9 9.5E-20 2.1E-24 173.0 25.8 302 191-568 1065-1382(1387)
184 KOG0303 Actin-binding protein 99.9 1.9E-19 4.1E-24 152.0 23.6 231 29-265 43-294 (472)
185 PRK11028 6-phosphogluconolacto 99.9 3E-18 6.4E-23 158.0 33.8 282 161-568 3-305 (330)
186 KOG4227 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 153.2 21.0 303 141-568 50-388 (609)
187 KOG1912 WD40 repeat protein [G 99.9 1.8E-18 4E-23 159.0 30.3 464 58-568 14-552 (1062)
188 KOG2110 Uncharacterized conser 99.9 3.1E-18 6.8E-23 143.6 29.0 236 19-265 6-248 (391)
189 KOG0642 Cell-cycle nuclear pro 99.9 1.7E-20 3.7E-25 165.8 16.2 273 183-531 287-568 (577)
190 KOG0303 Actin-binding protein 99.9 1.2E-19 2.7E-24 153.0 20.1 239 113-362 43-298 (472)
191 KOG0644 Uncharacterized conser 99.9 3.3E-21 7.2E-26 178.1 11.2 287 138-568 181-469 (1113)
192 PRK01742 tolB translocation pr 99.9 2.2E-19 4.7E-24 170.2 24.0 212 39-264 184-400 (429)
193 KOG0290 Conserved WD40 repeat- 99.9 6.6E-19 1.4E-23 142.5 22.7 249 59-361 44-321 (364)
194 KOG1523 Actin-related protein 99.8 6.1E-19 1.3E-23 144.9 22.3 238 18-263 10-276 (361)
195 PRK11028 6-phosphogluconolacto 99.8 1.7E-17 3.6E-22 153.0 33.8 271 37-315 10-305 (330)
196 KOG0649 WD40 repeat protein [G 99.8 5.3E-18 1.2E-22 133.7 25.2 229 20-264 12-273 (325)
197 KOG4227 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 146.3 23.4 310 15-358 53-387 (609)
198 KOG0771 Prolactin regulatory e 99.8 2.9E-19 6.2E-24 152.7 17.6 202 21-264 147-353 (398)
199 PF02239 Cytochrom_D1: Cytochr 99.8 4.5E-17 9.7E-22 148.5 32.9 331 161-578 7-356 (369)
200 KOG0771 Prolactin regulatory e 99.8 3.2E-18 6.9E-23 146.4 22.8 75 494-568 281-355 (398)
201 KOG1587 Cytoplasmic dynein int 99.8 4.3E-18 9.2E-23 159.1 25.4 275 307-611 223-517 (555)
202 KOG1310 WD40 repeat protein [G 99.8 9.1E-19 2E-23 154.5 19.0 137 182-360 42-180 (758)
203 KOG0974 WD-repeat protein WDR6 99.8 5.1E-16 1.1E-20 148.3 37.0 226 31-265 18-288 (967)
204 KOG1240 Protein kinase contain 99.8 1.3E-17 2.8E-22 161.3 26.0 306 179-608 1037-1431(1431)
205 KOG1334 WD40 repeat protein [G 99.8 3.4E-19 7.3E-24 154.8 13.8 310 181-568 133-467 (559)
206 KOG1517 Guanine nucleotide bin 99.8 1.2E-17 2.6E-22 159.0 25.2 294 149-527 1066-1384(1387)
207 PRK01742 tolB translocation pr 99.8 3.1E-18 6.6E-23 162.4 21.6 215 17-246 202-426 (429)
208 KOG0644 Uncharacterized conser 99.8 1.9E-19 4E-24 166.7 12.7 283 96-482 184-470 (1113)
209 KOG1334 WD40 repeat protein [G 99.8 5E-19 1.1E-23 153.7 14.1 310 52-401 135-469 (559)
210 KOG0642 Cell-cycle nuclear pro 99.8 5.7E-19 1.2E-23 156.3 14.0 251 15-278 291-570 (577)
211 PF02239 Cytochrom_D1: Cytochr 99.8 2.1E-15 4.5E-20 137.6 35.8 194 75-279 10-212 (369)
212 KOG2394 WD40 protein DMR-N9 [G 99.8 3.8E-17 8.3E-22 144.0 23.2 214 340-612 185-454 (636)
213 KOG2110 Uncharacterized conser 99.8 1.2E-15 2.6E-20 128.3 30.9 319 103-568 6-331 (391)
214 KOG2111 Uncharacterized conser 99.8 1E-15 2.3E-20 126.1 29.7 236 20-266 7-257 (346)
215 KOG0290 Conserved WD40 repeat- 99.8 4.3E-17 9.2E-22 132.2 21.0 239 16-262 94-362 (364)
216 KOG1587 Cytoplasmic dynein int 99.8 8.1E-17 1.8E-21 150.6 26.0 264 40-360 223-518 (555)
217 KOG2111 Uncharacterized conser 99.8 8.7E-16 1.9E-20 126.5 28.1 221 350-609 75-321 (346)
218 KOG1240 Protein kinase contain 99.8 8.4E-17 1.8E-21 155.9 25.7 341 44-396 1034-1431(1431)
219 KOG1310 WD40 repeat protein [G 99.8 3.5E-18 7.6E-23 150.8 14.7 209 51-264 42-302 (758)
220 PRK03629 tolB translocation pr 99.8 8.3E-17 1.8E-21 152.1 24.6 217 18-245 198-427 (429)
221 KOG2041 WD40 repeat protein [G 99.8 9.8E-15 2.1E-19 133.8 36.4 531 2-570 1-622 (1189)
222 PF04762 IKI3: IKI3 family; I 99.8 2.9E-12 6.3E-17 130.4 57.7 451 19-568 22-565 (928)
223 KOG1523 Actin-related protein 99.8 1.3E-16 2.7E-21 131.4 21.4 201 57-264 8-235 (361)
224 KOG2139 WD40 repeat protein [G 99.8 9.3E-16 2E-20 128.6 26.3 241 17-264 97-382 (445)
225 KOG0974 WD-repeat protein WDR6 99.8 6E-14 1.3E-18 134.5 41.4 151 22-179 137-289 (967)
226 COG4946 Uncharacterized protei 99.8 3.7E-13 8.1E-18 117.5 42.4 413 30-513 50-507 (668)
227 PRK05137 tolB translocation pr 99.8 1.4E-15 3E-20 145.0 28.0 214 40-264 183-411 (435)
228 PRK02889 tolB translocation pr 99.8 2.6E-16 5.7E-21 149.0 22.9 217 17-245 194-424 (427)
229 KOG2394 WD40 protein DMR-N9 [G 99.7 4.4E-16 9.6E-21 137.4 21.7 218 20-245 125-384 (636)
230 PRK05137 tolB translocation pr 99.7 4.8E-16 1E-20 148.1 24.1 217 17-245 200-432 (435)
231 PRK04922 tolB translocation pr 99.7 1.7E-15 3.7E-20 144.1 27.1 216 39-264 184-410 (433)
232 PRK03629 tolB translocation pr 99.7 1.7E-15 3.8E-20 143.1 26.4 216 39-264 179-405 (429)
233 PRK04922 tolB translocation pr 99.7 7E-16 1.5E-20 146.8 23.3 217 17-245 202-432 (433)
234 KOG1272 WD40-repeat-containing 99.7 1.3E-17 2.9E-22 144.1 10.3 231 59-312 129-360 (545)
235 PRK02889 tolB translocation pr 99.7 1.5E-15 3.2E-20 143.9 24.8 208 39-257 176-392 (427)
236 KOG2315 Predicted translation 99.7 3.1E-14 6.6E-19 126.9 30.6 232 21-264 37-301 (566)
237 KOG2315 Predicted translation 99.7 4.6E-14 1E-18 125.8 31.6 359 32-568 4-391 (566)
238 PF04762 IKI3: IKI3 family; I 99.7 2E-11 4.3E-16 124.4 55.0 495 15-610 72-639 (928)
239 KOG1272 WD40-repeat-containing 99.7 2.6E-17 5.6E-22 142.3 10.4 230 20-264 131-361 (545)
240 PF10282 Lactonase: Lactonase, 99.7 1.2E-12 2.7E-17 120.3 40.6 184 81-264 13-221 (345)
241 KOG1409 Uncharacterized conser 99.7 1.8E-15 3.9E-20 126.0 19.2 255 181-568 15-271 (404)
242 KOG2139 WD40 repeat protein [G 99.7 9E-15 1.9E-19 122.8 22.2 237 1-264 181-430 (445)
243 KOG3881 Uncharacterized conser 99.7 4.6E-15 9.9E-20 125.9 20.5 259 233-568 53-321 (412)
244 KOG2321 WD40 repeat protein [G 99.7 1.3E-14 2.9E-19 129.3 23.4 288 57-402 49-347 (703)
245 KOG2321 WD40 repeat protein [G 99.7 1.7E-14 3.8E-19 128.6 23.4 152 453-608 178-341 (703)
246 PF10282 Lactonase: Lactonase, 99.7 1.5E-12 3.2E-17 119.8 37.1 243 20-265 38-322 (345)
247 PRK01029 tolB translocation pr 99.7 2.9E-14 6.3E-19 134.1 25.9 222 18-247 184-426 (428)
248 COG4946 Uncharacterized protei 99.7 2.3E-12 4.9E-17 112.7 34.6 427 108-597 42-505 (668)
249 COG5354 Uncharacterized protei 99.7 6.1E-13 1.3E-17 117.3 29.9 335 173-568 15-396 (561)
250 COG5354 Uncharacterized protei 99.7 3.9E-13 8.5E-18 118.5 28.6 234 18-264 32-305 (561)
251 PF08662 eIF2A: Eukaryotic tra 99.7 3E-14 6.6E-19 117.7 20.6 160 106-278 9-187 (194)
252 PRK00178 tolB translocation pr 99.6 7.7E-14 1.7E-18 133.6 25.0 217 17-245 197-427 (430)
253 PRK01029 tolB translocation pr 99.6 2.1E-13 4.5E-18 128.4 26.9 218 40-264 166-402 (428)
254 TIGR02800 propeller_TolB tol-p 99.6 1.3E-13 2.8E-18 132.3 26.0 207 39-257 170-386 (417)
255 KOG3881 Uncharacterized conser 99.6 4.7E-14 1E-18 119.8 19.6 246 325-611 53-321 (412)
256 KOG2314 Translation initiation 99.6 8.8E-13 1.9E-17 117.5 27.8 232 21-264 213-477 (698)
257 PRK04792 tolB translocation pr 99.6 1.3E-13 2.8E-18 131.0 24.5 216 18-245 217-446 (448)
258 PF08662 eIF2A: Eukaryotic tra 99.6 1.5E-13 3.3E-18 113.5 21.1 157 20-184 7-184 (194)
259 KOG1409 Uncharacterized conser 99.6 2.9E-13 6.2E-18 113.1 21.6 359 139-525 16-395 (404)
260 COG2706 3-carboxymuconate cycl 99.6 2.2E-11 4.7E-16 103.6 32.3 185 80-264 15-220 (346)
261 TIGR02658 TTQ_MADH_Hv methylam 99.6 1.8E-11 3.9E-16 108.9 33.6 273 170-577 27-338 (352)
262 PRK04792 tolB translocation pr 99.6 6.8E-13 1.5E-17 126.1 26.2 214 40-264 199-424 (448)
263 KOG2314 Translation initiation 99.6 7.6E-12 1.7E-16 111.7 29.7 327 193-568 213-574 (698)
264 KOG1354 Serine/threonine prote 99.6 2E-13 4.3E-18 114.0 18.7 297 234-611 24-360 (433)
265 PRK00178 tolB translocation pr 99.6 9.2E-13 2E-17 126.2 26.4 213 40-264 180-405 (430)
266 TIGR02800 propeller_TolB tol-p 99.6 4.9E-13 1.1E-17 128.4 23.2 200 19-228 190-404 (417)
267 COG2706 3-carboxymuconate cycl 99.6 9.2E-11 2E-15 99.8 33.5 275 38-317 15-324 (346)
268 KOG1354 Serine/threonine prote 99.6 1.2E-12 2.5E-17 109.5 21.2 117 451-568 214-360 (433)
269 KOG2041 WD40 repeat protein [G 99.5 8.2E-11 1.8E-15 108.7 32.9 451 58-568 13-533 (1189)
270 TIGR03300 assembly_YfgL outer 99.5 4.7E-11 1E-15 112.5 31.3 300 162-521 67-376 (377)
271 KOG4547 WD40 repeat-containing 99.5 1.2E-11 2.6E-16 111.6 24.3 205 68-281 2-236 (541)
272 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.1E-10 8.8E-15 100.4 33.1 260 39-366 27-338 (352)
273 KOG4547 WD40 repeat-containing 99.5 1.3E-12 2.7E-17 117.8 17.0 148 459-611 67-221 (541)
274 TIGR03300 assembly_YfgL outer 99.5 2.2E-10 4.7E-15 108.0 32.3 306 202-607 65-376 (377)
275 KOG0280 Uncharacterized conser 99.5 3.1E-11 6.7E-16 99.0 20.2 245 39-295 46-310 (339)
276 PRK04043 tolB translocation pr 99.4 8.6E-11 1.9E-15 109.9 25.2 194 20-221 189-401 (419)
277 KOG0280 Uncharacterized conser 99.4 4.9E-11 1.1E-15 97.9 19.5 271 211-526 45-335 (339)
278 PRK04043 tolB translocation pr 99.4 5.9E-10 1.3E-14 104.3 28.7 211 39-264 169-397 (419)
279 PLN02919 haloacid dehalogenase 99.4 1.2E-09 2.5E-14 114.1 31.3 242 22-273 571-892 (1057)
280 KOG1064 RAVE (regulator of V-A 99.4 4.2E-12 9.2E-17 128.7 12.3 198 57-281 2206-2410(2439)
281 KOG1064 RAVE (regulator of V-A 99.4 6.4E-12 1.4E-16 127.5 12.5 191 20-229 2210-2407(2439)
282 KOG3914 WD repeat protein WDR4 99.4 1.7E-11 3.6E-16 105.3 13.3 158 452-612 64-225 (390)
283 KOG0309 Conserved WD40 repeat- 99.3 1E-11 2.2E-16 114.8 12.5 293 234-611 23-340 (1081)
284 PF15492 Nbas_N: Neuroblastoma 99.3 2.1E-09 4.7E-14 88.8 24.2 235 24-280 3-270 (282)
285 COG5170 CDC55 Serine/threonine 99.3 6.2E-11 1.3E-15 98.0 15.0 160 447-609 169-366 (460)
286 KOG4190 Uncharacterized conser 99.3 1.4E-11 3.1E-16 110.1 11.9 284 139-476 727-1032(1034)
287 KOG4190 Uncharacterized conser 99.3 1.3E-11 2.8E-16 110.4 10.8 282 52-354 728-1032(1034)
288 PF07433 DUF1513: Protein of u 99.3 1.5E-08 3.3E-13 86.8 28.1 253 19-312 5-283 (305)
289 KOG0309 Conserved WD40 repeat- 99.3 2.8E-11 6E-16 112.0 11.7 294 58-359 23-340 (1081)
290 PF08450 SGL: SMP-30/Gluconola 99.2 1E-07 2.2E-12 83.7 30.5 222 23-254 4-244 (246)
291 PLN02919 haloacid dehalogenase 99.2 2.5E-08 5.4E-13 104.4 30.6 157 453-612 685-890 (1057)
292 KOG3617 WD40 and TPR repeat-co 99.2 6.8E-09 1.5E-13 98.3 22.7 370 20-401 17-532 (1416)
293 KOG4714 Nucleoporin [Nuclear s 99.2 8E-10 1.7E-14 89.2 14.1 202 20-221 38-255 (319)
294 KOG3914 WD repeat protein WDR4 99.2 6.2E-10 1.3E-14 95.9 14.3 165 61-228 64-231 (390)
295 PRK11138 outer membrane biogen 99.2 9.4E-08 2E-12 90.5 30.4 300 162-523 71-393 (394)
296 KOG4532 WD40-like repeat conta 99.2 1.4E-08 3.1E-13 82.6 20.7 237 22-264 71-330 (344)
297 COG5170 CDC55 Serine/threonine 99.2 9.9E-10 2.2E-14 91.1 14.5 116 452-568 223-368 (460)
298 PRK11138 outer membrane biogen 99.2 8.8E-08 1.9E-12 90.7 29.3 307 71-397 69-393 (394)
299 PF15492 Nbas_N: Neuroblastoma 99.2 1.6E-08 3.4E-13 83.8 20.6 195 20-228 45-267 (282)
300 KOG4532 WD40-like repeat conta 99.2 1.3E-08 2.8E-13 82.8 19.2 156 453-610 161-331 (344)
301 KOG4649 PQQ (pyrrolo-quinoline 99.1 3.6E-06 7.9E-11 68.8 28.9 147 156-315 19-166 (354)
302 KOG4714 Nucleoporin [Nuclear s 99.0 3E-09 6.5E-14 86.0 10.7 151 457-611 96-255 (319)
303 KOG1920 IkappaB kinase complex 99.0 3.9E-05 8.5E-10 77.0 43.1 258 1-264 1-321 (1265)
304 PF08450 SGL: SMP-30/Gluconola 99.0 2.5E-06 5.4E-11 75.0 28.9 200 64-280 4-223 (246)
305 PF00400 WD40: WD domain, G-be 99.0 1.3E-09 2.9E-14 63.5 5.6 39 49-87 1-39 (39)
306 PF00930 DPPIV_N: Dipeptidyl p 99.0 2.9E-06 6.2E-11 78.8 30.5 225 27-264 1-265 (353)
307 KOG2695 WD40 repeat protein [G 99.0 1.6E-09 3.4E-14 91.3 7.7 139 466-611 228-377 (425)
308 KOG3621 WD40 repeat-containing 98.9 3.5E-07 7.6E-12 85.5 22.1 309 58-400 32-355 (726)
309 KOG4649 PQQ (pyrrolo-quinoline 98.9 1.3E-05 2.9E-10 65.6 29.3 144 109-261 17-161 (354)
310 KOG0882 Cyclophilin-related pe 98.9 1.1E-07 2.4E-12 83.5 17.3 297 146-564 8-369 (558)
311 PF06433 Me-amine-dh_H: Methyl 98.9 4E-06 8.6E-11 73.2 26.0 278 170-530 17-326 (342)
312 PF13360 PQQ_2: PQQ-like domai 98.9 1.7E-06 3.7E-11 76.0 24.7 219 169-402 2-234 (238)
313 PF07433 DUF1513: Protein of u 98.9 8.3E-06 1.8E-10 70.4 27.3 252 104-396 6-283 (305)
314 PF11768 DUF3312: Protein of u 98.9 2.8E-05 6.1E-10 72.1 31.3 83 445-531 254-336 (545)
315 KOG1920 IkappaB kinase complex 98.9 1.9E-06 4.1E-11 86.0 25.2 113 454-569 199-324 (1265)
316 KOG0882 Cyclophilin-related pe 98.8 1.3E-07 2.8E-12 83.1 14.5 252 17-280 8-316 (558)
317 PF00930 DPPIV_N: Dipeptidyl p 98.8 5.6E-06 1.2E-10 76.9 26.5 234 18-255 42-347 (353)
318 KOG2114 Vacuolar assembly/sort 98.8 1E-06 2.2E-11 84.4 21.3 225 288-584 27-259 (933)
319 COG0823 TolB Periplasmic compo 98.8 8.5E-08 1.8E-12 89.2 14.2 187 19-210 193-389 (425)
320 PF13360 PQQ_2: PQQ-like domai 98.8 1.6E-06 3.4E-11 76.2 21.5 221 129-363 5-235 (238)
321 KOG1897 Damage-specific DNA bi 98.8 0.0002 4.2E-09 70.7 53.9 563 20-610 308-942 (1096)
322 PF00400 WD40: WD domain, G-be 98.8 1.3E-08 2.7E-13 59.3 5.3 39 180-218 1-39 (39)
323 PF06433 Me-amine-dh_H: Methyl 98.8 5.9E-05 1.3E-09 66.1 29.1 177 39-223 17-216 (342)
324 KOG1832 HIV-1 Vpr-binding prot 98.8 8.3E-09 1.8E-13 98.3 5.4 212 17-252 1100-1318(1516)
325 KOG1645 RING-finger-containing 98.7 8.6E-07 1.9E-11 77.0 16.4 237 17-264 192-460 (463)
326 KOG2114 Vacuolar assembly/sort 98.7 6E-06 1.3E-10 79.4 23.4 224 197-542 30-261 (933)
327 KOG2695 WD40 repeat protein [G 98.7 3.7E-08 8E-13 83.3 7.9 161 427-590 228-401 (425)
328 KOG1645 RING-finger-containing 98.7 1.1E-06 2.5E-11 76.3 16.9 252 137-398 183-461 (463)
329 COG0823 TolB Periplasmic compo 98.7 9.1E-07 2E-11 82.4 17.4 207 39-256 173-390 (425)
330 PRK02888 nitrous-oxide reducta 98.7 6E-06 1.3E-10 78.4 21.5 221 23-255 197-451 (635)
331 KOG2066 Vacuolar assembly/sort 98.7 1.2E-06 2.7E-11 83.2 16.8 185 328-568 40-234 (846)
332 KOG3617 WD40 and TPR repeat-co 98.7 2.8E-06 6.2E-11 81.2 18.8 108 151-264 19-130 (1416)
333 KOG1832 HIV-1 Vpr-binding prot 98.7 1.4E-08 3.1E-13 96.8 3.6 204 51-279 1093-1301(1516)
334 PRK02888 nitrous-oxide reducta 98.7 2.3E-05 5E-10 74.6 24.2 224 27-265 138-404 (635)
335 KOG3621 WD40 repeat-containing 98.6 1.2E-05 2.7E-10 75.6 21.8 139 17-158 32-181 (726)
336 KOG2066 Vacuolar assembly/sort 98.6 9.4E-06 2E-10 77.5 19.4 186 104-314 41-233 (846)
337 PF04053 Coatomer_WDAD: Coatom 98.6 2.7E-05 5.8E-10 73.1 22.4 216 20-264 34-261 (443)
338 PF11768 DUF3312: Protein of u 98.6 0.00044 9.5E-09 64.5 29.3 92 474-568 238-330 (545)
339 PF06977 SdiA-regulated: SdiA- 98.6 0.00016 3.5E-09 61.8 24.5 193 19-217 22-247 (248)
340 KOG1275 PAB-dependent poly(A) 98.5 4.3E-06 9.3E-11 80.8 15.7 184 71-264 147-341 (1118)
341 cd00216 PQQ_DH Dehydrogenases 98.5 0.00023 5E-09 69.3 28.0 112 162-280 63-194 (488)
342 cd00216 PQQ_DH Dehydrogenases 98.5 0.00051 1.1E-08 66.9 30.3 274 71-367 61-433 (488)
343 KOG1275 PAB-dependent poly(A) 98.5 4.9E-06 1.1E-10 80.4 15.5 184 29-218 146-340 (1118)
344 PF02897 Peptidase_S9_N: Proly 98.5 0.00035 7.6E-09 67.1 28.7 242 20-264 125-403 (414)
345 COG3391 Uncharacterized conser 98.5 0.00092 2E-08 62.7 29.3 252 20-280 32-294 (381)
346 COG3386 Gluconolactonase [Carb 98.4 0.00028 6.1E-09 62.8 23.3 223 24-255 30-275 (307)
347 PF08596 Lgl_C: Lethal giant l 98.4 0.00047 1E-08 64.0 25.6 276 237-599 3-325 (395)
348 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00021 4.5E-09 67.4 23.5 226 23-263 33-285 (410)
349 PF14583 Pectate_lyase22: Olig 98.4 0.0018 4E-08 58.3 28.1 155 106-265 39-222 (386)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.0029 6.4E-08 61.9 31.1 112 202-319 69-194 (527)
351 PF04053 Coatomer_WDAD: Coatom 98.3 0.00044 9.6E-09 65.1 23.3 223 55-314 28-262 (443)
352 COG3391 Uncharacterized conser 98.3 0.0011 2.3E-08 62.3 25.9 221 20-246 75-309 (381)
353 COG3490 Uncharacterized protei 98.2 0.0011 2.3E-08 55.8 21.4 254 20-312 69-346 (366)
354 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0051 1.1E-07 58.2 29.6 217 307-565 62-285 (410)
355 PRK13616 lipoprotein LpqB; Pro 98.2 0.00077 1.7E-08 66.3 24.0 205 57-310 347-564 (591)
356 PF14870 PSII_BNR: Photosynthe 98.2 0.0032 7E-08 55.7 27.6 270 326-607 15-301 (302)
357 PF06977 SdiA-regulated: SdiA- 98.2 0.0026 5.7E-08 54.6 23.7 179 142-360 16-203 (248)
358 KOG1897 Damage-specific DNA bi 98.2 0.0092 2E-07 59.6 57.9 539 12-568 9-614 (1096)
359 PF02897 Peptidase_S9_N: Proly 98.2 0.0064 1.4E-07 58.5 29.2 208 61-280 125-368 (414)
360 PRK13616 lipoprotein LpqB; Pro 98.2 0.00036 7.8E-09 68.5 20.1 182 19-215 350-563 (591)
361 PF10647 Gmad1: Lipoprotein Lp 98.1 0.0014 3.1E-08 57.3 21.6 152 20-174 25-192 (253)
362 PF00780 CNH: CNH domain; Int 98.1 0.0046 1E-07 55.6 25.9 230 28-281 5-267 (275)
363 PF00780 CNH: CNH domain; Int 98.1 0.0028 6E-08 57.0 24.4 238 200-484 5-259 (275)
364 PF08596 Lgl_C: Lethal giant l 98.1 0.0012 2.7E-08 61.3 21.6 242 20-264 3-334 (395)
365 PF03178 CPSF_A: CPSF A subuni 98.1 0.002 4.3E-08 59.3 22.3 214 39-262 2-262 (321)
366 KOG4640 Anaphase-promoting com 98.0 3E-05 6.5E-10 72.1 9.1 96 449-547 19-115 (665)
367 COG5276 Uncharacterized conser 98.0 0.0071 1.5E-07 51.4 26.7 275 288-610 88-369 (370)
368 PF03178 CPSF_A: CPSF A subuni 98.0 0.0097 2.1E-07 54.8 25.2 218 258-521 3-262 (321)
369 PF08553 VID27: VID27 cytoplas 98.0 0.001 2.2E-08 66.5 19.1 145 340-523 493-646 (794)
370 KOG4640 Anaphase-promoting com 97.9 4.9E-05 1.1E-09 70.8 9.1 95 147-245 20-115 (665)
371 PF07995 GSDH: Glucose / Sorbo 97.9 0.016 3.5E-07 53.2 26.3 238 20-260 3-330 (331)
372 PF14583 Pectate_lyase22: Olig 97.9 0.017 3.6E-07 52.4 30.1 226 24-256 41-303 (386)
373 smart00320 WD40 WD40 repeats. 97.9 3.9E-05 8.4E-10 44.4 5.4 38 50-87 3-40 (40)
374 KOG1008 Uncharacterized conser 97.9 4.3E-06 9.4E-11 77.5 1.4 204 148-359 57-276 (783)
375 PF08553 VID27: VID27 cytoplas 97.9 0.0099 2.1E-07 59.7 24.3 140 71-220 493-647 (794)
376 PRK10115 protease 2; Provision 97.9 0.043 9.2E-07 56.0 29.5 239 20-264 128-393 (686)
377 PF05694 SBP56: 56kDa selenium 97.9 0.019 4.1E-07 52.5 23.2 120 158-281 86-242 (461)
378 COG3490 Uncharacterized protei 97.8 0.011 2.3E-07 50.1 19.9 232 150-396 70-346 (366)
379 KOG1008 Uncharacterized conser 97.8 9.7E-06 2.1E-10 75.3 2.6 193 297-568 71-276 (783)
380 KOG4499 Ca2+-binding protein R 97.8 0.014 3.1E-07 47.8 19.4 217 24-245 20-263 (310)
381 COG3204 Uncharacterized protei 97.8 0.013 2.9E-07 50.0 19.6 173 186-360 81-265 (316)
382 COG3386 Gluconolactonase [Carb 97.7 0.016 3.5E-07 51.8 21.3 144 451-600 111-276 (307)
383 PF10647 Gmad1: Lipoprotein Lp 97.7 0.018 4E-07 50.4 21.1 147 413-559 25-187 (253)
384 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0049 1.1E-07 44.3 13.6 99 497-605 2-109 (111)
385 KOG2079 Vacuolar assembly/sort 97.6 0.00025 5.3E-09 70.7 9.1 107 499-609 92-202 (1206)
386 PHA02713 hypothetical protein; 97.6 0.0074 1.6E-07 59.8 19.3 149 460-612 350-535 (557)
387 PRK13684 Ycf48-like protein; P 97.6 0.053 1.1E-06 49.9 28.4 153 450-610 172-331 (334)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.053 1.2E-06 50.5 22.7 86 490-578 303-407 (415)
389 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.094 2E-06 51.7 30.2 112 247-364 69-195 (527)
390 smart00320 WD40 WD40 repeats. 97.6 0.00019 4.2E-09 41.3 5.0 38 181-218 3-40 (40)
391 COG3204 Uncharacterized protei 97.6 0.043 9.3E-07 47.1 19.9 162 16-180 83-265 (316)
392 KOG2444 WD40 repeat protein [G 97.5 0.00017 3.6E-09 58.5 5.1 142 74-221 33-178 (238)
393 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.017 3.7E-07 41.6 14.6 101 150-260 2-109 (111)
394 KOG4441 Proteins containing BT 97.5 0.029 6.4E-07 55.5 20.9 225 297-568 286-547 (571)
395 PF05694 SBP56: 56kDa selenium 97.4 0.094 2E-06 48.2 22.1 226 28-254 85-392 (461)
396 KOG2444 WD40 repeat protein [G 97.4 0.00073 1.6E-08 54.9 6.9 106 461-568 69-178 (238)
397 KOG2079 Vacuolar assembly/sort 97.3 0.016 3.4E-07 58.6 16.9 101 23-124 92-197 (1206)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.15 3.3E-06 47.6 26.9 83 191-280 308-409 (415)
399 KOG4499 Ca2+-binding protein R 97.3 0.073 1.6E-06 43.9 18.0 134 451-590 109-262 (310)
400 KOG4441 Proteins containing BT 97.3 0.051 1.1E-06 53.9 20.0 227 340-611 285-547 (571)
401 KOG2395 Protein involved in va 97.3 0.014 2.9E-07 54.1 14.6 125 440-567 365-500 (644)
402 PHA02713 hypothetical protein; 97.3 0.046 1E-06 54.4 19.6 94 473-570 433-536 (557)
403 KOG2395 Protein involved in va 97.2 0.0094 2E-07 55.1 13.1 139 70-219 344-499 (644)
404 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0027 5.9E-08 37.7 5.6 32 449-480 10-41 (47)
405 PRK10115 protease 2; Provision 97.0 0.52 1.1E-05 48.4 33.9 114 104-219 128-254 (686)
406 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0032 6.9E-08 37.4 5.4 35 190-225 11-45 (47)
407 COG5276 Uncharacterized conser 97.0 0.2 4.3E-06 43.1 28.2 278 234-567 85-369 (370)
408 PF15390 DUF4613: Domain of un 96.9 0.43 9.4E-06 45.6 24.6 177 191-378 20-210 (671)
409 PF14761 HPS3_N: Hermansky-Pud 96.9 0.15 3.2E-06 42.0 15.7 150 63-219 21-213 (215)
410 PF10168 Nup88: Nuclear pore c 96.8 0.78 1.7E-05 46.8 23.4 21 104-124 86-106 (717)
411 TIGR02604 Piru_Ver_Nterm putat 96.8 0.5 1.1E-05 44.4 23.0 146 19-167 14-202 (367)
412 KOG1896 mRNA cleavage and poly 96.7 0.94 2E-05 47.3 42.6 143 463-611 1047-1214(1366)
413 PF14870 PSII_BNR: Photosynthe 96.7 0.45 9.7E-06 42.6 32.5 278 233-564 14-301 (302)
414 KOG2377 Uncharacterized conser 96.6 0.11 2.3E-06 47.6 14.3 154 21-179 25-186 (657)
415 PLN00033 photosystem II stabil 96.6 0.66 1.4E-05 43.6 30.5 147 453-607 241-396 (398)
416 KOG2280 Vacuolar assembly/sort 96.6 0.18 4E-06 49.3 16.3 217 20-247 45-271 (829)
417 KOG3630 Nuclear pore complex, 96.6 0.054 1.2E-06 55.4 13.1 149 103-253 101-261 (1405)
418 KOG3616 Selective LIM binding 96.5 0.28 6.1E-06 48.0 16.9 77 191-278 15-91 (1636)
419 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.81 1.8E-05 43.1 30.2 184 340-528 145-364 (418)
420 PHA03098 kelch-like protein; P 96.5 0.29 6.2E-06 49.1 18.2 146 461-611 342-512 (534)
421 PF05096 Glu_cyclase_2: Glutam 96.4 0.53 1.2E-05 40.6 22.3 115 235-401 44-160 (264)
422 PHA03098 kelch-like protein; P 96.4 0.5 1.1E-05 47.4 19.6 104 461-568 389-512 (534)
423 PF05096 Glu_cyclase_2: Glutam 96.4 0.58 1.2E-05 40.4 20.8 166 104-280 46-214 (264)
424 KOG3630 Nuclear pore complex, 96.3 0.079 1.7E-06 54.3 12.6 144 450-597 100-260 (1405)
425 KOG2377 Uncharacterized conser 96.2 1.1 2.3E-05 41.5 19.5 137 195-337 27-163 (657)
426 PF15390 DUF4613: Domain of un 96.2 1.3 2.8E-05 42.6 25.1 115 19-138 57-187 (671)
427 PF14727 PHTB1_N: PTHB1 N-term 96.1 1.3 2.9E-05 41.7 31.6 274 71-360 37-362 (418)
428 TIGR02604 Piru_Ver_Nterm putat 96.0 0.38 8.1E-06 45.3 15.6 142 452-598 15-201 (367)
429 KOG3616 Selective LIM binding 96.0 0.73 1.6E-05 45.3 16.7 112 146-263 13-124 (1636)
430 PF02333 Phytase: Phytase; In 95.8 1.5 3.3E-05 40.4 22.1 84 443-526 200-292 (381)
431 KOG1916 Nuclear protein, conta 95.8 0.024 5.2E-07 56.2 6.4 176 39-219 153-373 (1283)
432 PF10313 DUF2415: Uncharacteri 95.7 0.069 1.5E-06 30.7 5.5 32 60-91 1-35 (43)
433 TIGR03074 PQQ_membr_DH membran 95.6 3.3 7.1E-05 42.9 24.0 111 162-280 196-355 (764)
434 PF12234 Rav1p_C: RAVE protein 95.6 0.41 8.8E-06 47.3 13.9 112 150-264 32-155 (631)
435 PHA02790 Kelch-like protein; P 95.6 1.1 2.4E-05 44.0 17.2 145 460-612 317-472 (480)
436 PF10168 Nup88: Nuclear pore c 95.6 3.4 7.3E-05 42.4 25.2 74 191-265 85-179 (717)
437 PRK13684 Ycf48-like protein; P 95.5 2 4.3E-05 39.7 30.3 274 18-312 45-329 (334)
438 KOG1916 Nuclear protein, conta 95.5 0.036 7.8E-07 55.0 6.3 137 471-609 152-322 (1283)
439 COG3292 Predicted periplasmic 95.4 2.7 5.9E-05 40.3 23.1 71 146-221 163-234 (671)
440 PLN00033 photosystem II stabil 95.3 2.7 5.8E-05 39.7 27.5 148 104-262 240-396 (398)
441 PF12234 Rav1p_C: RAVE protein 95.3 0.47 1E-05 46.9 13.2 113 10-122 21-148 (631)
442 PF10433 MMS1_N: Mono-function 95.2 3.6 7.8E-05 40.9 40.0 199 60-264 44-285 (504)
443 PF14761 HPS3_N: Hermansky-Pud 95.2 1.5 3.3E-05 36.4 17.0 153 453-610 20-214 (215)
444 PF10313 DUF2415: Uncharacteri 95.2 0.11 2.5E-06 29.8 5.2 32 495-526 1-35 (43)
445 PF07995 GSDH: Glucose / Sorbo 95.1 2.7 5.9E-05 38.8 24.6 71 449-519 251-330 (331)
446 COG3292 Predicted periplasmic 95.1 3.3 7.2E-05 39.8 22.5 150 103-263 165-316 (671)
447 TIGR03074 PQQ_membr_DH membran 95.1 4.9 0.00011 41.7 22.5 28 202-229 194-221 (764)
448 PF08728 CRT10: CRT10; InterP 95.0 1.9 4.1E-05 43.4 16.3 146 462-609 49-245 (717)
449 PF10433 MMS1_N: Mono-function 94.9 4.4 9.6E-05 40.3 36.7 367 19-401 44-479 (504)
450 PF12657 TFIIIC_delta: Transcr 94.8 0.29 6.3E-06 40.0 9.0 70 21-91 7-123 (173)
451 PF07569 Hira: TUP1-like enhan 94.6 0.25 5.4E-06 42.0 8.4 66 502-568 18-96 (219)
452 TIGR03548 mutarot_permut cycli 94.6 3.9 8.3E-05 37.8 21.0 56 460-515 170-233 (323)
453 KOG1898 Splicing factor 3b, su 94.5 7.1 0.00015 40.7 38.5 153 452-610 879-1048(1205)
454 KOG2280 Vacuolar assembly/sort 94.5 5.8 0.00013 39.7 20.8 195 307-506 65-271 (829)
455 PF08728 CRT10: CRT10; InterP 94.4 5.8 0.00013 40.1 18.0 115 451-566 101-245 (717)
456 PHA02790 Kelch-like protein; P 94.2 3.5 7.7E-05 40.5 16.6 186 28-223 270-473 (480)
457 KOG1898 Splicing factor 3b, su 94.2 8.2 0.00018 40.3 30.7 109 456-568 939-1049(1205)
458 COG5167 VID27 Protein involved 94.2 1.4 3.1E-05 41.3 12.6 141 68-220 476-632 (776)
459 smart00036 CNH Domain found in 94.1 4.6 9.9E-05 36.7 26.0 232 27-279 10-280 (302)
460 PLN02153 epithiospecifier prot 94.0 5.4 0.00012 37.3 19.7 138 461-600 85-260 (341)
461 COG5167 VID27 Protein involved 94.0 5 0.00011 38.0 15.5 61 461-524 572-632 (776)
462 KOG4460 Nuclear pore complex, 93.9 1.8 3.9E-05 40.9 12.7 102 60-187 104-207 (741)
463 PLN02193 nitrile-specifier pro 93.9 6.9 0.00015 38.4 19.5 139 461-601 228-387 (470)
464 COG1506 DAP2 Dipeptidyl aminop 93.6 9.7 0.00021 39.0 29.7 334 21-399 15-385 (620)
465 KOG1900 Nuclear pore complex, 93.5 2.1 4.4E-05 45.6 13.7 151 22-179 82-273 (1311)
466 COG4590 ABC-type uncharacteriz 93.5 2.2 4.7E-05 39.5 12.2 158 449-611 219-387 (733)
467 PF13449 Phytase-like: Esteras 93.4 6.3 0.00014 36.4 16.8 143 18-161 19-228 (326)
468 PLN02153 epithiospecifier prot 93.4 6.9 0.00015 36.6 21.6 61 340-400 33-111 (341)
469 PF14781 BBS2_N: Ciliary BBSom 93.3 2.8 6.1E-05 31.7 11.3 112 497-612 1-127 (136)
470 TIGR03118 PEPCTERM_chp_1 conse 93.2 5.6 0.00012 35.1 22.0 210 61-281 24-291 (336)
471 TIGR02276 beta_rpt_yvtn 40-res 93.0 0.55 1.2E-05 27.2 5.7 30 28-57 1-32 (42)
472 PF03022 MRJP: Major royal jel 93.0 6.5 0.00014 35.4 18.3 183 351-555 35-253 (287)
473 PRK13613 lipoprotein LpqB; Pro 92.9 11 0.00025 37.9 21.6 190 20-214 364-576 (599)
474 PRK13614 lipoprotein LpqB; Pro 92.9 11 0.00023 37.6 19.1 195 19-216 343-553 (573)
475 PF07250 Glyoxal_oxid_N: Glyox 92.9 5.8 0.00013 34.3 14.9 143 83-229 48-206 (243)
476 COG3823 Glutamine cyclotransfe 92.8 4.8 0.0001 33.1 13.9 157 113-279 55-214 (262)
477 TIGR03548 mutarot_permut cycli 92.6 8.6 0.00019 35.6 20.4 97 461-558 123-233 (323)
478 PF07569 Hira: TUP1-like enhan 92.5 0.91 2E-05 38.7 8.4 57 67-123 18-87 (219)
479 PF08801 Nucleoporin_N: Nup133 92.5 11 0.00023 36.6 18.5 31 191-221 190-220 (422)
480 PF13449 Phytase-like: Esteras 92.5 8.7 0.00019 35.5 17.1 148 102-252 19-231 (326)
481 PF11725 AvrE: Pathogenicity f 92.4 22 0.00047 39.7 26.2 158 144-317 359-519 (1774)
482 PF12768 Rax2: Cortical protei 92.2 8 0.00017 34.4 14.5 78 39-118 16-105 (281)
483 KOG2247 WD40 repeat-containing 92.2 0.038 8.2E-07 50.8 -0.2 135 414-551 37-173 (615)
484 KOG2247 WD40 repeat-containing 92.0 0.025 5.5E-07 51.9 -1.5 146 104-260 36-183 (615)
485 PF07676 PD40: WD40-like Beta 92.0 0.81 1.7E-05 26.0 5.3 32 55-86 4-38 (39)
486 COG4257 Vgb Streptogramin lyas 91.9 7.9 0.00017 33.5 23.6 135 453-590 191-325 (353)
487 TIGR03606 non_repeat_PQQ dehyd 91.8 4.9 0.00011 38.6 12.9 55 452-506 31-90 (454)
488 TIGR03118 PEPCTERM_chp_1 conse 91.7 9 0.00019 33.9 21.9 87 460-547 210-307 (336)
489 KOG1900 Nuclear pore complex, 91.7 4.2 9.2E-05 43.4 13.2 152 63-221 82-273 (1311)
490 TIGR02276 beta_rpt_yvtn 40-res 91.6 0.98 2.1E-05 26.1 5.5 32 157-188 1-32 (42)
491 COG4590 ABC-type uncharacteriz 91.5 1 2.2E-05 41.5 7.7 163 19-225 221-391 (733)
492 PF10214 Rrn6: RNA polymerase 91.2 22 0.00049 37.5 19.6 197 413-611 28-277 (765)
493 KOG4460 Nuclear pore complex, 91.2 15 0.00032 35.3 14.8 99 104-228 105-206 (741)
494 TIGR03547 muta_rot_YjhT mutatr 90.6 15 0.00032 34.4 20.6 128 472-602 168-332 (346)
495 TIGR03606 non_repeat_PQQ dehyd 90.5 17 0.00037 35.0 29.4 105 20-124 31-167 (454)
496 PF07676 PD40: WD40-like Beta 90.4 1.5 3.4E-05 24.8 5.4 33 143-175 4-38 (39)
497 COG4257 Vgb Streptogramin lyas 90.4 11 0.00024 32.7 21.6 237 18-264 61-304 (353)
498 TIGR03547 muta_rot_YjhT mutatr 90.2 16 0.00035 34.2 21.9 50 340-389 64-128 (346)
499 PF10395 Utp8: Utp8 family; I 90.0 23 0.0005 35.7 22.8 166 58-228 128-313 (670)
500 COG1506 DAP2 Dipeptidyl aminop 89.7 26 0.00057 36.0 21.9 149 14-168 55-236 (620)
No 1
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-89 Score=588.26 Aligned_cols=599 Identities=51% Similarity=0.866 Sum_probs=564.1
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
|.+++++++|++.|.+.|+...-+..+|.|+.|+|+.++.|.+.+++++.....+.+|..+++-..|||.|-|+|+|...
T Consensus 1 ms~~~lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 1 MSEYELKETFASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred CchhhhhhhccCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCc
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCC
Q 007229 81 GSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 81 ~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
|+|||||....+. ++.++....++|..++|++|++++++.|+++++ +..++.||+|..+..+.+|...|.+++|-|..
T Consensus 81 G~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~~F~~DSG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGHVFLWDSGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred CcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-eeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence 9999999987444 778889999999999999999999999999888 99999999999999999999999999999999
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+++++||++|++|.+|+-...+...+++.|..-|.|+.|+|||+++++++.||++.+||-.+|+.+..+....+|.+.|.
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf 239 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF 239 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976679999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
+++|+||++.+++++.|.++++||+ .+..+++++..... ...+.++|.|.++.+++.+.+|.+.+++..... +
T Consensus 240 alsWsPDs~~~~T~SaDkt~KIWdV----s~~slv~t~~~~~~--v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~ 312 (603)
T KOG0318|consen 240 ALSWSPDSTQFLTVSADKTIKIWDV----STNSLVSTWPMGST--VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-V 312 (603)
T ss_pred EEEECCCCceEEEecCCceEEEEEe----eccceEEEeecCCc--hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-h
Confidence 9999999999999999999999999 89999999988774 778999999999999999999999999988877 8
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-ecccceEEEEeec-cEEEEecCCCeEEEEec
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-KYDARIKCLAAVE-EVIFTAGFDNKVWRVPL 397 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~-~~l~~~~~~~~i~~~~~ 397 (612)
...+.+|...|+++..++. +.+|++|+.||.|.-|+...+..-++.. .|...|.+++..+ +.+++.+.|.++++.++
T Consensus 313 ~~~i~GHnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL 391 (603)
T ss_pred hheecccccceeEEEEcCC-CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence 8999999999999999943 6999999999999999999998887764 3999999999955 99999999999999999
Q ss_pred CCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEE
Q 007229 398 CEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIY 477 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~ 477 (612)
............+..+|..++..+++ ..+++.....+.++.........+......+++++|++..+++|++||.|+||
T Consensus 392 ~~~~~t~~~~~~lg~QP~~lav~~d~-~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvy 470 (603)
T KOG0318|consen 392 KDNGYTKSEVVKLGSQPKGLAVLSDG-GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVY 470 (603)
T ss_pred ccCcccccceeecCCCceeEEEcCCC-CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEE
Confidence 88888877788999999999988876 67788888899999988888888899999999999999999999999999999
Q ss_pred EccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec
Q 007229 478 SISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557 (612)
Q Consensus 478 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 557 (612)
.+....+.....+..|.++|++++||||+.+||+++..+.+.+||+.+.+.....+..|...|.+++|+|+..++|+|+.
T Consensus 471 sl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 471 SLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred EecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc
Confidence 99988876677888999999999999999999999999999999999999877777889999999999999999999999
Q ss_pred CcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 558 DTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 558 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
|.+|.||+++.+. +.+....+|...|+.+.|.++..++++|.|.+|++|++.
T Consensus 551 Dt~Viiysv~kP~-~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 551 DTNVIIYSVKKPA-KHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cceEEEEEccChh-hheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999988 778889999999999999999999999999999999975
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-67 Score=468.77 Aligned_cols=567 Identities=16% Similarity=0.194 Sum_probs=486.7
Q ss_pred EEEccCCCEEEEecCCEEEEEeCCCCce-eeEe-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee-
Q 007229 24 ISGNPKTDTILYCNGRSVLIRYLDKPLH-VEFY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV- 100 (612)
Q Consensus 24 ~~~s~d~~~l~~~~~~~i~i~~~~~~~~-~~~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~- 100 (612)
++||++|+.|++..++.|.+-|+.+++. +... .+-...|++++++||+++|++++..+-+++|++.+++ +.+..+.
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk-~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK-LIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccch-HhHhHhhc
Confidence 8999999999999999999999999987 3332 2356789999999999999999999999999999998 4445665
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCE-EEEEeecCCeEEEEeCCC
Q 007229 101 LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPF-RIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 101 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~ 179 (612)
|.+++.-++|.|.+..|+++|.++ .+.+|++..+.+.+.|++|.+.|.++.|+|+-.+ +|++|..|+++++||+..
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~---~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADG---RVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccc---eEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 999999999999999999999998 6799999999999999999999999999998653 689999999999999996
Q ss_pred Cee-eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-----CCEEEEE
Q 007229 180 FKF-KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-----GKKVLTV 253 (612)
Q Consensus 180 ~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~ 253 (612)
... +..+..|...|++++|++|+..+++++.|..+.+||+.+.+....+ +-...+.++.+-++ +.+++++
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l----p~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL----PLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee----chhhheeeEEEechhcCCcceEEEEe
Confidence 554 7788999999999999999999999999999999999888888777 56677888888887 6799999
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+.+|.+++||. +++.++........+. ..-.........++..+.+..+.+|| .........+-|..+.|..+
T Consensus 257 G~~g~~~~~d~----es~~~~~~~~~~~~~e--~~~~~~~~~~~~~l~vtaeQnl~l~d-~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 257 GGSGVVQYWDS----ESGKCVYKQRQSDSEE--IDHLLAIESMSQLLLVTAEQNLFLYD-EDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred cCCceEEEEec----ccchhhhhhccCCchh--hhcceeccccCceEEEEccceEEEEE-ccccEEehhhcCCchhheee
Confidence 99999999999 8888777665554222 11222233478889999999999998 44455667788899999999
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCc---ccee
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGD---AEHI 408 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~ 408 (612)
.|..++.+.++.++..+.+++|+..+..+. +..+|...|.++.. .+..+++++.|.++++|.++++.... ....
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 999666899999999999999999988888 45559999999994 66799999999999999885444321 2234
Q ss_pred ccCCCcceeeecCCCCcEEEEEe-eccEEEeeccc-------cee-----eecccceEEEEEEccCCCeEEEEecCCeEE
Q 007229 409 DVGSQPLDLSLALSSPELALVST-ESGVILLDSLK-------VMS-----KIDLGFTVTACAIAPDGSEAIVGGQNGKLH 475 (612)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 475 (612)
.+......++++..+..+++..+ +..+.+|+-.. ... ...|...|++++++|+.+++|+|+.|.+.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence 45566777888777777666555 45578887222 111 122788999999999999999999999999
Q ss_pred EEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 476 i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
||+++...+ ..++.+|...|.++.|+|..+.+|+++.|++|+||.+.+..++ +++.||...|..+.|-.+|+.|+++
T Consensus 489 iW~le~~~l--~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 489 IWDLEQLRL--LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred eecccCceE--EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEec
Confidence 999997766 8899999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred ecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEecc
Q 007229 556 SIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 556 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
+.||-+++|++.+ . .|...+.+|.+.|.+++-+ ....++||+.||.|.+|.=.|
T Consensus 566 ~adGliKlWnikt-~-eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 566 GADGLIKLWNIKT-N-ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cCCCcEEEEeccc-h-hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999999 7 8999999999999999999 778999999999999997543
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-59 Score=421.61 Aligned_cols=543 Identities=15% Similarity=0.216 Sum_probs=450.1
Q ss_pred ceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC
Q 007229 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG 81 (612)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~ 81 (612)
+++.++.+++.... --.+.|++||..+++..++.|.++|+.+.+.....-.+...|++++.||+|.+|++....|
T Consensus 3 ~efrfsNllGTvyr-----~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 3 TEFRFSNLLGTVYR-----AGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred cccchhhcccceee-----cCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCC
Confidence 55666666665552 2358999999999999999999999999887776677999999999999999999999999
Q ss_pred eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC--------CceeeeeccCCceEEEE
Q 007229 82 SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS--------GTTVGDFDGHSRRVLSC 153 (612)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~--------~~~~~~~~~~~~~v~~~ 153 (612)
...+-++..... .. ....+.+|.++.|||||+++|++..+- ++||.... -..-+++.+|-..|.++
T Consensus 78 ~~~lvs~~~r~V-lh-~f~fk~~v~~i~fSPng~~fav~~gn~----lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si 151 (893)
T KOG0291|consen 78 RALLVSLLSRSV-LH-RFNFKRGVGAIKFSPNGKFFAVGCGNL----LQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSI 151 (893)
T ss_pred cEEEEeccccee-eE-EEeecCccceEEECCCCcEEEEEecce----eEEEecCcchhcccCcceEeeeecCCccceeEE
Confidence 999988887752 22 233567999999999999999987763 55665442 12345678899999999
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC----------
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS---------- 221 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------- 221 (612)
.|+.|.+ ++++|+.|.++++|.++..+- ...+.+|.+.|.+.-|..+...+++.+.||.+.+|....
T Consensus 152 ~Ws~DSr-~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 152 DWSDDSR-LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred EeccCCc-eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccc
Confidence 9999999 599999999999999887766 555889999999999999999999999999999998761
Q ss_pred -------------CCe-----eeeee---ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 222 -------------GEK-----IGEFS---SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 222 -------------~~~-----~~~~~---~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
++. ..... -.......+++.+|++..+.|+++-..|...+|++ ....+++.+...
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel----P~f~lih~LSis 306 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL----PDFNLIHSLSIS 306 (893)
T ss_pred cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEec----CCceEEEEeecc
Confidence 111 00000 01123378999999999999999999999999999 889999888765
Q ss_pred Cccccceeeeeeecc--CCEEEEEEcC-CEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 281 TSNAVEDMLVGCLWQ--NDHLITVSLG-GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 281 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
. ..+..+.++ ++.++.|+.. |.+.+|+.. .+..+...++|...++++++++. ++++++|+.||.|++||.
T Consensus 307 ~-----~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-sEsYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 307 D-----QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-SESYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNT 379 (893)
T ss_pred c-----ceeeEEEecccCCEEEEcCCccceEEEEEee-ccceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEec
Confidence 3 456666666 8888888776 899999954 45666778899999999999932 899999999999999999
Q ss_pred CCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccE
Q 007229 358 GVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGV 435 (612)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (612)
..+.+...+..|...|+.+.| .++.+++.+.||+++.||+.....-
T Consensus 380 ~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-------------------------------- 427 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-------------------------------- 427 (893)
T ss_pred cCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee--------------------------------
Confidence 999999999999999999999 8899999999999999999876532
Q ss_pred EEeecccceeeec--ccceEEEEEEccCCCeEEEEecCC-eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE
Q 007229 436 ILLDSLKVMSKID--LGFTVTACAIAPDGSEAIVGGQNG-KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 436 ~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
+++. .+.+..|++..|.|.++.+|+.|. .|++|++++|++ .-.+.+|.+||.+++|+|++..||++
T Consensus 428 ---------RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql--lDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 428 ---------RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL--LDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred ---------eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee--eehhcCCCCcceeeEEccccCeEEec
Confidence 2222 334578899999999999999887 799999999998 78899999999999999999999999
Q ss_pred cCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcce-------------------
Q 007229 513 DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSR------------------- 573 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~------------------- 573 (612)
+.|.+||+||+-......+.+. +...+..++|+|||+.||+++.||.|.+||.+... +.
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~-q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV-QVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred cccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhce-eeccccchhhcccccccccee
Confidence 9999999999977755445555 78889999999999999999999999999997622 11
Q ss_pred eeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 574 ITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 574 ~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
...-.......+.|+|+ ||..+++||..+.|++|++.++
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 01111233578999999 9999999999999999998764
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-60 Score=425.81 Aligned_cols=528 Identities=20% Similarity=0.251 Sum_probs=431.8
Q ss_pred EEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee
Q 007229 65 ARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF 143 (612)
Q Consensus 65 ~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~ 143 (612)
++|+++|+.|++...| .|.+-|+.++.. +...-......+++++.+||+++|++++... .+++|.+++++.++.+
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~---llrv~~L~tgk~irsw 100 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQ---LLRVWSLPTGKLIRSW 100 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccc---eEEEEEcccchHhHhH
Confidence 8999999999999766 688899999985 3333334556899999999999999999988 7899999999999999
Q ss_pred cc-CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC--eEEEEEcCCcEEEEecC
Q 007229 144 DG-HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS--KLISVSSDRKGLIYDGK 220 (612)
Q Consensus 144 ~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~ 220 (612)
+. |..||..++|+|.+. ++++|+.|+.+++||+..+.+...++||.+.|.++.|+|+-+ .|++|..|+.+++||++
T Consensus 101 Ka~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred hhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence 98 999999999999996 899999999999999999999999999999999999999765 58899999999999999
Q ss_pred CCCe-eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee---ccC
Q 007229 221 SGEK-IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL---WQN 296 (612)
Q Consensus 221 ~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 296 (612)
+... +..+ ..|.+.|++++|++|+..+++++.|..+.+||+ .+.+..+..+.... .+.....-. -.+
T Consensus 180 ~~~tcl~~~---~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~----~~~~~l~~lp~ye~--~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 180 DKRTCLHTM---ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL----VQYKKLKTLPLYES--LESVVRLREELGGKG 250 (775)
T ss_pred cCchHHHHH---HhhhhheeeeeeccCCceEEEeccCcEEEEeeh----hhhhhhheechhhh--eeeEEEechhcCCcc
Confidence 6665 4444 589999999999999999999999999999999 66666666554431 111111100 014
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
..+++.+.+|.+++|+..........-+.....+..+..... ...++..+.|..+.++|.++.+......+....|..+
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~-~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIES-MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccc-cCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 689999999999999976654333322222333555555422 4566677788999999999999988888899999999
Q ss_pred Ee---eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeec----c--cceee-
Q 007229 377 AA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDS----L--KVMSK- 446 (612)
Q Consensus 377 ~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~- 446 (612)
.+ +.++++.++..+.+++++..+..+. ....+...+.++....++.-++..+.++.+++|.- . ..+..
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 99 4589999999999999988877765 33444455556664455545555666778888842 1 11111
Q ss_pred ecccceEEEEEEccCC-CeEEEEecCCeEEEEEccCcc-------cccceeeccccCceEEEEEcCCCcEEEEEcCCCeE
Q 007229 447 IDLGFTVTACAIAPDG-SEAIVGGQNGKLHIYSISGNT-------LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 518 (612)
..|...|.+++++..+ .+|++++.|.++++|++...+ +........|...|++++++|+.+++|+|+.|++.
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta 487 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA 487 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence 2288899999998755 578999999999999997622 12223456799999999999999999999999999
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
+||+++..... ..+.+|...|.++.|+|..+.|||+|.|++|+||.+++ . .|++++.||...|..+.|- +++.|+|
T Consensus 488 KiW~le~~~l~-~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-f-SClkT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 488 KIWDLEQLRLL-GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-F-SCLKTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred eeecccCceEE-EEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-c-eeeeeecCccceeEeeeeeeCCcEEEe
Confidence 99999966665 78999999999999999999999999999999999999 7 8999999999999999999 9999999
Q ss_pred ccCCCeEEEEEeccC
Q 007229 598 SGEDACIRVWRLATE 612 (612)
Q Consensus 598 ~~~d~~i~~w~~~~~ 612 (612)
++.||.|++|++++.
T Consensus 565 ~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 565 AGADGLIKLWNIKTN 579 (775)
T ss_pred ccCCCcEEEEeccch
Confidence 999999999999873
No 5
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-58 Score=414.22 Aligned_cols=566 Identities=15% Similarity=0.173 Sum_probs=459.2
Q ss_pred ccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCC
Q 007229 27 NPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR 104 (612)
Q Consensus 27 s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 104 (612)
+..|++++......|.+||+.+++..+.+. .-...|+|++-+||.-.||.|-.||.|+||+..+.. +...+.+|+..
T Consensus 31 ~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-~~~tfngHK~A 109 (888)
T KOG0306|consen 31 SGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-ILITFNGHKAA 109 (888)
T ss_pred cCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc-eeeeecccccc
Confidence 346999999889999999999996554433 344689999999999999999999999999999886 56689999999
Q ss_pred eEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee
Q 007229 105 IDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184 (612)
Q Consensus 105 i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 184 (612)
|+.+.|...|.+|++++.|+. |.+|+.-....+..+.+|.+.|+..-|..+.+ .+++.+.|+.|++||+++..+..
T Consensus 110 Vt~l~fd~~G~rlaSGskDt~---IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~-~lvS~sKDs~iK~WdL~tqhCf~ 185 (888)
T KOG0306|consen 110 VTTLKFDKIGTRLASGSKDTD---IIVWDLVGEEGLFRLRGHKDSITQALFLNGDS-FLVSVSKDSMIKFWDLETQHCFE 185 (888)
T ss_pred eEEEEEcccCceEeecCCCcc---EEEEEeccceeeEEeecchHHHhHHhccCCCe-EEEEeccCceEEEEecccceeee
Confidence 999999999999999999983 45555557788899999999999999999777 69999999999999999999999
Q ss_pred cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC------------CeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG------------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
+.-.|.+.+.++++.+ +.+++++.|+.+++|++... +....+ .+...+....+...++++++++
T Consensus 186 Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~--~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 186 THVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF--IRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred EEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee--eeccCCceeEEeecCcccEEEE
Confidence 9999999999999997 78999999999999998211 111112 1123344556677778899999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEe---------eeeccCc----------------cccceeeeeeecc----CCEEEEEE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIK---------TFASSTS----------------NAVEDMLVGCLWQ----NDHLITVS 303 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~~----------------~~~~~~~~~~~~~----~~~~~~~~ 303 (612)
-+.|..+.++.+....+..+.+. ....... -.....+..+.+- ....++.-
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence 99999999998832110000000 0000000 0001111222221 22334447
Q ss_pred cCCEEEEEEcCCCCCC--------ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 304 LGGIISIFSASNLDKA--------PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
.++.+..|.+...... ...+.+|...|.++++++ .+.++..+..+.+++|+..+.++.+..... .+.+
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~ 417 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGESIKIWNRDTLKCIRTITCG--YILA 417 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCCcEEEEEccCcceeEEeccc--cEEE
Confidence 8888888887763222 245779999999999996 566666667789999999999998877533 5666
Q ss_pred EEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee-----c--cc----
Q 007229 376 LAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD-----S--LK---- 442 (612)
Q Consensus 376 ~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~---- 442 (612)
..| .+.++++|...|.+.++|+...... .....+.....+++.+|++..++..+.+..+..|+ . +.
T Consensus 418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTKNGELQVFDLASASLV-ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred EEecCCCceEEEeccCCceEEEEeehhhhh-hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 565 6778999999999999999988766 33347788899999999999999999999999997 1 11
Q ss_pred ----ceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeE
Q 007229 443 ----VMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518 (612)
Q Consensus 443 ----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 518 (612)
..+.++....|.|+.+||||++||++--|.+|+||-+++-++ ...+.+|.-||.||..|||+++++||+.|.+|
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnV 574 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNV 574 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCce
Confidence 124455778999999999999999999999999999999887 78899999999999999999999999999999
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
+||-+.-|.+. +.+.+|...|.++.|.|+..++.+++.|+.|+-||-+. . ++++.+.+|...|++++.+ +|.+++|
T Consensus 575 KiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-F-e~iq~L~~H~~ev~cLav~~~G~~vvs 651 (888)
T KOG0306|consen 575 KIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-F-EEIQKLDGHHSEVWCLAVSPNGSFVVS 651 (888)
T ss_pred EEeccccchhh-hhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-h-hhheeeccchheeeeeEEcCCCCeEEe
Confidence 99999999997 56777999999999999999999999999999999987 6 8999999999999999999 8999999
Q ss_pred ccCCCeEEEEEecc
Q 007229 598 SGEDACIRVWRLAT 611 (612)
Q Consensus 598 ~~~d~~i~~w~~~~ 611 (612)
+|.|.+|++|....
T Consensus 652 ~shD~sIRlwE~td 665 (888)
T KOG0306|consen 652 SSHDKSIRLWERTD 665 (888)
T ss_pred ccCCceeEeeeccC
Confidence 99999999998654
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-56 Score=384.56 Aligned_cols=528 Identities=17% Similarity=0.238 Sum_probs=424.3
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCcee--eEeccCCCceEEEEECCCCCEEEEeeCc----CeEEEee
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHV--EFYGEHGYPVTVARYSPNGEWIASADVS----GSVRIWG 87 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~--~~~~~h~~~v~~~~~s~d~~~las~~~d----~~i~iwd 87 (612)
.+|...++-..|||.|.|+|+|. .|.|+|||....+.+ ..+..-.++|..++|++|+++|+..++. |.+.+||
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 45777899999999999999998 799999998763322 3355678899999999999998887532 4566777
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
.-+. ...+.+|...|+++.|-|... +++++++|+ .+.++.=..-+...++..|...|.++.|+|||. ++++.
T Consensus 136 SG~S---vGei~GhSr~ins~~~KpsRPfRi~T~sdDn---~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~-~Fat~ 208 (603)
T KOG0318|consen 136 SGNS---VGEITGHSRRINSVDFKPSRPFRIATGSDDN---TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS-RFATA 208 (603)
T ss_pred CCCc---cceeeccceeEeeeeccCCCceEEEeccCCC---eEEEeeCCCeeeeecccccccceeeEEECCCCC-eEEEe
Confidence 6554 358999999999999999875 678888887 344444445667778899999999999999999 69999
Q ss_pred ecCCeEEEEeCCCCeeeeccc---ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 167 GEDFLVNFYEGPPFKFKLSHR---EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
+.||.|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+.+++.++.....-......+.|
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 999999999999999999887 89999999999999999999999999999999999999998543333344555666
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
. ...|++.+.+|.|.+++. .....++.+..+... -....+..++..+++++.+|.|.-|+..........-
T Consensus 289 q--kd~lItVSl~G~in~ln~----~d~~~~~~i~GHnK~---ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 289 Q--KDHLITVSLSGTINYLNP----SDPSVLKVISGHNKS---ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred e--CCeEEEEEcCcEEEEecc----cCCChhheecccccc---eeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 5 557999999999999999 777777777766521 1223334447899999999999999988776665566
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec-eecccceEEEEe--eccEEEEecCCCeEEEEecCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE-KKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~ 400 (612)
.+|...|..++... ...+++.+.|.++++.++..+...... ........+++. ++..++.+..++.+.+-+...
T Consensus 360 ~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~- 436 (603)
T KOG0318|consen 360 KGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK- 436 (603)
T ss_pred ccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc-
Confidence 88999999999886 588999999999999988655443322 113344447777 334555555555444433332
Q ss_pred CCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee--c---ccceeeecccceEEEEEEccCCCeEEEEecCCeEE
Q 007229 401 ECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--S---LKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLH 475 (612)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 475 (612)
.........+.+++++|++...++.+.+..+.++. . .+.....+|..+|+++++|||+.+||++...+.+.
T Consensus 437 ----~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 437 ----VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred ----ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence 23445677888999999999888888888888886 1 22335566999999999999999999999999999
Q ss_pred EEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 476 i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
+||+.+.+. ......-|...|.+++|+|+..++|+|+-|-.|.||+++..........+|...|+.+.|- |...|++.
T Consensus 513 ~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSs 590 (603)
T KOG0318|consen 513 LYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSS 590 (603)
T ss_pred EEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEec
Confidence 999998876 3444556999999999999999999999999999999998877667778899999999998 45678999
Q ss_pred ecCcEEEEEEcc
Q 007229 556 SIDTCVIIYEIG 567 (612)
Q Consensus 556 ~~d~~i~iwd~~ 567 (612)
+.|..|++|++.
T Consensus 591 G~Da~iK~W~v~ 602 (603)
T KOG0318|consen 591 GQDANIKVWNVT 602 (603)
T ss_pred cCcceeEEeccc
Confidence 999999999874
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-60 Score=394.15 Aligned_cols=367 Identities=21% Similarity=0.309 Sum_probs=305.5
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.+|.+.|.|++|+|+|+.|++|+ |.++++||+.+..+..+.++|.+.|.|++|||||+.||+|+.||+|++||.+++++
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 36889999999999999999998 78999999999999999999999999999999999999999999999999999998
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
+...+.+|...|++++|.|-. ..|..+ +|++++.||.|+
T Consensus 192 ~g~~l~gH~K~It~Lawep~h----------------------------------------l~p~~r-~las~skDg~vr 230 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLH----------------------------------------LVPPCR-RLASSSKDGSVR 230 (480)
T ss_pred ccccccCcccceeEEeecccc----------------------------------------cCCCcc-ceecccCCCCEE
Confidence 888999999999999997732 134444 699999999999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
|||+..+.++..+.+|+.+|+|+.|--+| ++++++.|++|++|+...|.+...+ .+|...|+.++.+.|- .|-+|
T Consensus 231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~l---kGHahwvN~lalsTdy-~LRtg 305 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCREL---KGHAHWVNHLALSTDY-VLRTG 305 (480)
T ss_pred EEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhh---cccchheeeeeccchh-hhhcc
Confidence 99999999999999999999999998666 8999999999999999999999988 5999999999998653 23344
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
..|. +++....+....... ...+. .+
T Consensus 306 af~~------------t~~~~~~~se~~~~A-----------------------------------l~rY~----~~--- 331 (480)
T KOG0271|consen 306 AFDH------------TGRKPKSFSEEQKKA-----------------------------------LERYE----AV--- 331 (480)
T ss_pred cccc------------ccccCCChHHHHHHH-----------------------------------HHHHH----Hh---
Confidence 4332 222221111000000 00000 00
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
....+..+++|+.|.++.+|+....+....
T Consensus 332 --~~~~~erlVSgsDd~tlflW~p~~~kkpi~------------------------------------------------ 361 (480)
T KOG0271|consen 332 --LKDSGERLVSGSDDFTLFLWNPFKSKKPIT------------------------------------------------ 361 (480)
T ss_pred --hccCcceeEEecCCceEEEecccccccchh------------------------------------------------
Confidence 011167888999999999987543321110
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH 493 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 493 (612)
+...|...|+.+.||||++++|+++-|..|++|+-.+|++ ...+.+|
T Consensus 362 -------------------------------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~--lasfRGH 408 (480)
T KOG0271|consen 362 -------------------------------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF--LASFRGH 408 (480)
T ss_pred -------------------------------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch--hhhhhhc
Confidence 1112445688999999999999999999999999999998 7899999
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
-++|..++|+.|.++|++++.|.++++||+++.++. .-+.+|..+|.++.|+|||..+++|+.|+.+++|.
T Consensus 409 v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec-ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999886 56888999999999999999999999999999995
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-60 Score=391.33 Aligned_cols=368 Identities=25% Similarity=0.408 Sum_probs=311.8
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
.++...+.+|.++|.+++|+|++. .|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 345567899999999999999999 5999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEec-----CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSP-----DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
||.++|+++..- ..+|...|++++|.| ..++|++++.||.++|||+ ..+.++
T Consensus 184 wdpktg~~~g~~--l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~----~~~~~~----------------- 240 (480)
T KOG0271|consen 184 WDPKTGQQIGRA--LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT----KLGTCV----------------- 240 (480)
T ss_pred ecCCCCCccccc--ccCcccceeEEeecccccCCCccceecccCCCCEEEEEc----cCceEE-----------------
Confidence 999999988765 469999999999976 5779999999999999998 555444
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
..+.+|..+|+++.|-. ..++++|+.|++|++|+...+.+...+..|..
T Consensus 241 -----------------------------~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHah 289 (480)
T KOG0271|consen 241 -----------------------------RTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAH 289 (480)
T ss_pred -----------------------------EEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccch
Confidence 45668999999999986 68999999999999999999999999999999
Q ss_pred ceEEEEeeccEEE-EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 372 RIKCLAAVEEVIF-TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 372 ~i~~~~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
.|+.++.+.++.+ ++..|.+=+.....+ +. ..+.+..
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~s-e~-------------------------------------~~~Al~r---- 327 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFS-EE-------------------------------------QKKALER---- 327 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChH-HH-------------------------------------HHHHHHH----
Confidence 9999998655543 333222111000000 00 0000000
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 530 (612)
...+.-..+..|++|+.|.++.+|+....+ .++..+.+|..-|+.+.||||++++|+++-|..|++||-.+++.+
T Consensus 328 ---Y~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l- 402 (480)
T KOG0271|consen 328 ---YEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL- 402 (480)
T ss_pred ---HHHhhccCcceeEEecCCceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh-
Confidence 001112235789999999999999976554 236778899999999999999999999999999999999999997
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEE
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~ 608 (612)
..+.+|-.+|..++|+.|.++|++|+.|.++++|++++ . +...-+.+|.++|..+.|+ ||..+++|+.|..+++|.
T Consensus 403 asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-k-Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 403 ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-K-KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-e-eecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 77999999999999999999999999999999999998 5 6778899999999999999 999999999999999995
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-52 Score=375.99 Aligned_cols=493 Identities=16% Similarity=0.214 Sum_probs=402.8
Q ss_pred CCCceeEEEEccCCCEEEEecCCEEEEEeCCCCc--------eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 17 ERGRGILISGNPKTDTILYCNGRSVLIRYLDKPL--------HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~--------~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.+..|.|+.|||||+++|++.++.+.||...... +.+++.||-..|+++.||.|.++|++|+.|.+++||++
T Consensus 95 fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred ecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 4668999999999999999999999999876432 34567899999999999999999999999999999999
Q ss_pred CCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-----------------------Cce-----
Q 007229 89 HNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-----------------------GTT----- 139 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-----------------------~~~----- 139 (612)
...+. ....+.+|...|....|..|...+.+.+.++ .+.+|..+. ++.
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG---~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~ 251 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDG---ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKI 251 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCc---eEEEEEecCCCcccccccccccccccccccccchhhhcce
Confidence 87765 3457889999999999999999999999999 456665550 111
Q ss_pred ------eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC-C
Q 007229 140 ------VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD-R 212 (612)
Q Consensus 140 ------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g 212 (612)
..-+......|++.+|++.-. +|++|-..|...+|+++...+++.+.-...+|..++|+..|.+|+.|+.. |
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klg 330 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLG 330 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccc
Confidence 111233447899999999988 79999999999999999999999998888899999999999999998875 8
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
.+.||+.++...+.+. .+|...+.+++++|||+++++|++||.|++||. ..+-+..+|..+. ..+.++
T Consensus 331 QLlVweWqsEsYVlKQ---QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~----~SgfC~vTFteHt-----s~Vt~v 398 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQ---QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT----QSGFCFVTFTEHT-----SGVTAV 398 (893)
T ss_pred eEEEEEeeccceeeec---cccccceeeEEECCCCcEEEeccCCCcEEEEec----cCceEEEEeccCC-----CceEEE
Confidence 9999999987777666 499999999999999999999999999999999 9999999998776 345555
Q ss_pred ecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcc-cceeEEEEEecCCcEEEEEecCC-cEEEEEcCCceeeeecee
Q 007229 293 LWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHV-KNVSTLTALKISQQTILSSSYDG-AIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 293 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~ 368 (612)
.|. ++.+++.+-||+|+.||+..... .+++.... ....+++. ++.+.++++|+.|. .|.+|++++++....+.+
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 555 88999999999999999765433 33333222 22333333 44478888888875 699999999999999999
Q ss_pred cccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceee
Q 007229 369 YDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSK 446 (612)
Q Consensus 369 ~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (612)
|.++|.++++ .+..|++++.|.+|++|++-... ....+
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----------------------------------------~~vEt 516 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----------------------------------------GTVET 516 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEEeeccC----------------------------------------ceeee
Confidence 9999999888 78999999999999999986543 23455
Q ss_pred ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccc----cce--------------eeccccCceEEEEEcCCCcE
Q 007229 447 IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT----EEM--------------VLEKHRGAITVIQYSPDVSM 508 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~--------------~~~~~~~~i~~~~~s~~~~~ 508 (612)
++....+..++|+|||+.||+++-||.|.+||...+... ... .-......++.+++|+||.+
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~ 596 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC 596 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence 667778999999999999999999999999998765431 000 00122357899999999999
Q ss_pred EEEEcCCCeEEEEecCCcceeeecc-------------------------------------------cc----------
Q 007229 509 FASADGNREAIVWDRVSKEVKLNNM-------------------------------------------LF---------- 535 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------------------------~~---------- 535 (612)
+++|+..+.|++|++.++-.+.+.. .+
T Consensus 597 IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr 676 (893)
T KOG0291|consen 597 ILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR 676 (893)
T ss_pred EEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccc
Confidence 9999999999999998765531100 00
Q ss_pred --cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 536 --HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 536 --~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..-.|.++.|+|.|+-+|.++..| +.||.+.+
T Consensus 677 ~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 677 FRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred cCceEEEEEEEECCCcCeeeeecccc-eEEEecCC
Confidence 012478899999999999999998 88998865
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-51 Score=366.49 Aligned_cols=535 Identities=14% Similarity=0.155 Sum_probs=428.3
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
+..++|+.-+||.-+||+|. ||.|.||+..++.....+.||...|+++.|...|..||+||.|+.|.+||+-... -..
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-Gl~ 143 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-GLF 143 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-eeE
Confidence 45789999999999999998 8999999999999999999999999999999999999999999999999998877 445
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 176 (612)
.+.+|+..|+.+-|..+.+.|++++.|+ ++++|+.++..+..+.-.|...+..+++.++ ++++++.|+.+++|+
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs---~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~---~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDS---MIKFWDLETQHCFETHVDHRGEIWALVLDEK---LLVTAGTDSELKVWE 217 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCc---eEEEEecccceeeeEEecccceEEEEEEecc---eEEEEecCCceEEEE
Confidence 8999999999999999999999999998 7899999999999999999999999999994 799999999999999
Q ss_pred CCC----------Cee--eec-ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec-------------
Q 007229 177 GPP----------FKF--KLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS------------- 230 (612)
Q Consensus 177 ~~~----------~~~--~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------- 230 (612)
+.. ... ..+ .+...+....++..+++++++.-+.|..+.++.+.+.+.+.....
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence 721 000 001 122334455667778888999999999999998865432211100
Q ss_pred ------------------cCCccccEEEEEEecCCC---EEEEEeCCCcEEEEEeecCCCC-CeeEeeeeccCcccccee
Q 007229 231 ------------------EDGHHGSIYAVSWSPDGK---KVLTVSADKSAKVWEILEDGSG-GRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 231 ------------------~~~~~~~v~~i~~~~~~~---~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~ 288 (612)
.-.....+.++.|.|.++ .|+. -.++++.+|.+.....+ .++... ...........
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~-~~i~~~GHR~d 375 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRT-SNIEIGGHRSD 375 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCcccccc-ceeeeccchhh
Confidence 002345678888888543 3343 56788999998542222 111111 11111223345
Q ss_pred eeeeecc-CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 289 LVGCLWQ-NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 289 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
+.++.++ ++.++..+.++.+++|+... .+.++++... .+.+..|.+ .+.+++.|...|.+.++|+..........
T Consensus 376 VRsl~vS~d~~~~~Sga~~SikiWn~~t-~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAGESIKIWNRDT-LKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred eeEEEeecCceeeeecCCCcEEEEEccC-cceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 5566666 55566666788999999554 3444444322 566666664 27889999999999999999999998888
Q ss_pred ecccceEEEEe--eccEEEEecCCCeEEEEecCCCCC-----------CccceeccCCCcceeeecCCCCcEEEEEeecc
Q 007229 368 KYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGEC-----------GDAEHIDVGSQPLDLSLALSSPELALVSTESG 434 (612)
Q Consensus 368 ~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (612)
.|++.++.++. ++..+++++.|.++++|+..--.. ......++...+.+++++|++..+++.--++.
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 89999999998 888999999999999999642211 12245677888999999999988888777887
Q ss_pred EEEee--cccceeee-cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEE
Q 007229 435 VILLD--SLKVMSKI-DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511 (612)
Q Consensus 435 ~~~~~--~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (612)
+.++. +.+..-.+ .|+-||.|+.+|||++++++|+.|..|++|-++-|.+ ...+-+|...|.++.|-|+...+.+
T Consensus 532 VkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC--HKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC--HKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred EEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh--hhhhhcccCceeEEEEcccceeEEE
Confidence 77664 55544444 3899999999999999999999999999999999988 7889999999999999999999999
Q ss_pred EcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 512 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++.|+.|+-||-...+.+ ..+.+|...|.|++.+|+|.++++++.|.+|++|....
T Consensus 610 ~gKD~kvKqWDg~kFe~i-q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKFEEI-QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ecCcceEEeechhhhhhh-eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999887 66888999999999999999999999999999998765
No 11
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-50 Score=361.62 Aligned_cols=552 Identities=16% Similarity=0.209 Sum_probs=418.5
Q ss_pred eEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee--CcC
Q 007229 4 VHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD--VSG 81 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~--~d~ 81 (612)
+.|+++++-.-... ..++.+|-..++||..+..|.+||.+..++-+.+..|..+++|++||++|+|+|+|- ...
T Consensus 27 ~~L~kVlGlTv~~~----~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~p 102 (1080)
T KOG1408|consen 27 LILQKVLGLTVKNA----NGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTP 102 (1080)
T ss_pred hhhHhhhceEeecC----CcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCc
Confidence 44555555444333 368899999999999999999999999999888999999999999999999999985 667
Q ss_pred eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCE
Q 007229 82 SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPF 161 (612)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (612)
.++||++.... ...++..|+..++|++|+|.++|+++.|...+. .+.+|+|........ ..-...|..++|+.++.|
T Consensus 103 a~kVw~la~h~-vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDM-IVnv~dWr~N~~~as-nkiss~Vsav~fsEdgSY 179 (1080)
T KOG1408|consen 103 ASKVWSLAFHG-VVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDM-IVNVNDWRVNSSGAS-NKISSVVSAVAFSEDGSY 179 (1080)
T ss_pred cceeeeecccc-chhhhhhccccceeeeecCCCcEEEeeccccce-EEEhhhhhhcccccc-cccceeEEEEEEccCCce
Confidence 79999999887 566899999999999999999999999988876 778888875433322 224578999999999996
Q ss_pred EEEEeecCCeEEEEeCCCCeeeec---c----------------------------------ccc---------------
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLS---H----------------------------------REH--------------- 189 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~---~----------------------------------~~~--------------- 189 (612)
++|.+. ..|++|.++.++.... + .||
T Consensus 180 -fvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVq 257 (1080)
T KOG1408|consen 180 -FVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQ 257 (1080)
T ss_pred -eeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhh
Confidence 777764 4699998765541110 0 011
Q ss_pred --ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC---------------------CccccEEEEEEecC
Q 007229 190 --SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---------------------GHHGSIYAVSWSPD 246 (612)
Q Consensus 190 --~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------------------~~~~~v~~i~~~~~ 246 (612)
.....|++.+ .+++++|+.+|.|++|+.++-....++.... +.-....++.|++.
T Consensus 258 cRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet 335 (1080)
T KOG1408|consen 258 CRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET 335 (1080)
T ss_pred hhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCC
Confidence 0112344444 6799999999999999988766555443111 11122457789998
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc-cccce------eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS-NAVED------MLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
...|.+...|..+++||+++...-+++-..+..... ..++. .........+.+++++.|++|++|++......
T Consensus 336 ~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn 415 (1080)
T KOG1408|consen 336 TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNN 415 (1080)
T ss_pred CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccc
Confidence 899999999999999999766555555443332211 00000 01111223566899999999999997651100
Q ss_pred ------------------------------------ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 320 ------------------------------------PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 320 ------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
....-+....+.+++.++ +++.|++|..-|.+++|++...+..
T Consensus 416 ~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~ 494 (1080)
T KOG1408|consen 416 QVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYT 494 (1080)
T ss_pred ceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhh
Confidence 000112334678888873 2899999999999999999998888
Q ss_pred eeceecccceEEEEe-----eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEe
Q 007229 364 KLEKKYDARIKCLAA-----VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILL 438 (612)
Q Consensus 364 ~~~~~~~~~i~~~~~-----~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (612)
.....|...|.|+.+ ..+.|++++.|..|.++|....-.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~------------------------------------ 538 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD------------------------------------ 538 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc------------------------------------
Confidence 888889999999999 457899999999999999875542
Q ss_pred ecccceeeec-ccceEEEEEEccCC--CeEEEEecCCeEEEEEcc---CcccccceeeccccCceEEEEEcCCCcEEEEE
Q 007229 439 DSLKVMSKID-LGFTVTACAIAPDG--SEAIVGGQNGKLHIYSIS---GNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 439 ~~~~~~~~~~-~~~~i~~~~~s~~~--~~l~~~~~dg~v~i~d~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
.++++. |...|+++.|...| ..+++++.|..|.+--.+ .+.+.+...-.-....+..|+..|..++++++
T Consensus 539 ----l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 539 ----LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred ----hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 233343 67789999998877 778888888877654433 12222122222223568999999999999999
Q ss_pred cCCCeEEEEecCCcceeeeccc---ccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEE
Q 007229 513 DGNREAIVWDRVSKEVKLNNML---FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAF 589 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 589 (612)
+.|+.|+|||+++++.. +.+. +|.+..-.+...|.|.|||+...|+++.++|+.+ + +++..+.+|...|+.+.|
T Consensus 615 cQDrnirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-g-EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-G-ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred ecccceEEEecccccee-eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc-c-hhhhhhcCcchheeeeee
Confidence 99999999999999986 4444 3566788899999999999999999999999999 7 899999999999999999
Q ss_pred e-cCceEEEccCCCeEEEEEec
Q 007229 590 M-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 590 ~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
+ |-+.|++++.||+|.+|.+.
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cccchhheeecCCceEEEEECc
Confidence 9 99999999999999999985
No 12
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.3e-45 Score=315.83 Aligned_cols=541 Identities=18% Similarity=0.252 Sum_probs=405.1
Q ss_pred eeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC-
Q 007229 3 EVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG- 81 (612)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~- 81 (612)
.+.++++++-.-. .--..+-+-|.|..+.+ ..+.+.+++.+... ++.+.||+..|.|++.+||.-.+|+|-..|
T Consensus 53 kl~LewvygYRG~---dcR~Nly~lptgE~vyf-vA~V~Vl~n~ee~~-Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~ 127 (626)
T KOG2106|consen 53 KLKLEWVYGYRGV---DCRNNLYLLPTGELVYF-VAAVGVLYNWEERS-QRHYLGHNDDIKCMAVHPDRIRVATGQGAGT 127 (626)
T ss_pred CceeEEEEeecce---eeeceeEEccCccEEEE-eccEEEEEeehhhh-cccccCCCCceEEEeecCCceeeccCccccc
Confidence 3555666554332 12235667787765444 45666777876533 444779999999999999999999875444
Q ss_pred -------eEEEeecCCCceeeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEE
Q 007229 82 -------SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSC 153 (612)
Q Consensus 82 -------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~ 153 (612)
.+++||..+...+ ..+......|.+++||+ ++..++..-+++..+.+.+|+|+.+......+...+.|...
T Consensus 128 ~g~~~~phvriWdsv~L~TL-~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a 206 (626)
T KOG2106|consen 128 SGRPLQPHVRIWDSVTLSTL-HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLA 206 (626)
T ss_pred CCCcCCCeeeecccccceee-eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEE
Confidence 4999998877633 35557778999999998 33344444455555589999999999999888899999999
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeec---cccc-ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS---HREH-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
.|+|.++.++++++ .+.+.+|+.+.+.+.+. ++.+ ..-|.|++|.++|. +++|..+|.|.||+..+.+..+..
T Consensus 207 ~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~- 283 (626)
T KOG2106|consen 207 TFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV- 283 (626)
T ss_pred EeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe-
Confidence 99999998777776 56799999988876654 3322 26799999999996 889999999999998777666666
Q ss_pred ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
..|++.|.+++...+|. |++|+.|..|..||- ..+.++..+.+. ....+..+......+++|+..+.|.
T Consensus 284 --~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~-----~y~k~r~~elPe---~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 284 --HAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD-----NYRKLRETELPE---QFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred --eecCCceEEEEEecCcc-EeecCccceEEeccc-----cccccccccCch---hcCCeeEEecCCCcEEEeeccceEE
Confidence 28999999999999997 555999999999993 344444433332 2234444455545588888888777
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-eccEEEEecC
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-VEEVIFTAGF 388 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~ 388 (612)
.=.+.... .....+|......++..+. .+.+++++.|+.+++|+ ............+..|+.| ..+.++.+..
T Consensus 353 ~Gt~~~~f--~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~ 426 (626)
T KOG2106|consen 353 QGTLENGF--TLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN---DHKLEWTKIIEDPAECADFHPSGVVAVGTA 426 (626)
T ss_pred EeeecCCc--eEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc---CCceeEEEEecCceeEeeccCcceEEEeec
Confidence 66655433 3456678889999988832 78899999999999999 2333333336777888888 3338888889
Q ss_pred CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEE
Q 007229 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVG 468 (612)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 468 (612)
.|...+.|.++.... .....+.++++++|+|+|.+||+|
T Consensus 427 ~G~w~V~d~e~~~lv-----------------------------------------~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLV-----------------------------------------TIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred cceEEEEecccceeE-----------------------------------------EEEecCCceEEEEEcCCCCEEEEe
Confidence 998888888764322 111235689999999999999999
Q ss_pred ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee----------------eec
Q 007229 469 GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK----------------LNN 532 (612)
Q Consensus 469 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~----------------~~~ 532 (612)
+.|+.|++|.++.+.....+.-..+..+|+.+.||+|+++|.+-+.|-.|..|.....+.. +..
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 9999999999976654334444445589999999999999999999999999944332221 001
Q ss_pred -ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCC-cceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 533 -MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPA-SSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 533 -~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
...|...|..++-+.+.++||+|.+.|.|++|...-.. ......+.+|++.|++++|+ .+..|++.+.|.+|..|++
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 12355667788888889999999999999999986421 14567788999999999999 8888888889999999997
Q ss_pred c
Q 007229 610 A 610 (612)
Q Consensus 610 ~ 610 (612)
.
T Consensus 626 v 626 (626)
T KOG2106|consen 626 V 626 (626)
T ss_pred C
Confidence 3
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-49 Score=330.76 Aligned_cols=281 Identities=21% Similarity=0.262 Sum_probs=262.1
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeecCCCc
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~~~~~ 92 (612)
.....+..+.||+|++.||+|+ +|.+.||+..+...+++|.||...|.++.|+|. +..|||++.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 4456889999999999999999 999999999999999999999999999999996 6799999999999999999977
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
+...+.+|...|..++|+|+|++|++++.|. .-++|+..++..+....||...|.+++|.|||. +++||+.|..-
T Consensus 253 -~l~~l~gH~~RVs~VafHPsG~~L~TasfD~---tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~ 327 (459)
T KOG0272|consen 253 -PLQDLEGHLARVSRVAFHPSGKFLGTASFDS---TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLG 327 (459)
T ss_pred -chhhhhcchhhheeeeecCCCceeeeccccc---chhhcccccchhhHhhcccccccceeEecCCCc-eeeccCccchh
Confidence 5668999999999999999999999999998 468999999999999999999999999999999 79999999999
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVL 251 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~ 251 (612)
+|||+++++++..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+..+ .+|..-|+.++|+| .|.+|+
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec---ccccchhhheEecccCCeEEE
Confidence 99999999999999999999999999999999999999999999999999998888 39999999999998 789999
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccccee
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 331 (612)
+++.|+++++|.. .+.. +...+.||.+.|.
T Consensus 405 TasyD~t~kiWs~----~~~~----------------------------------------------~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 405 TASYDNTVKIWST----RTWS----------------------------------------------PLKSLAGHEGKVI 434 (459)
T ss_pred EcccCcceeeecC----CCcc----------------------------------------------cchhhcCCccceE
Confidence 9999999999997 4444 3456778999999
Q ss_pred EEEEE-ecCCcEEEEEecCCcEEEEE
Q 007229 332 TLTAL-KISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 332 ~~~~~-~~~~~~l~~~~~dg~i~~wd 356 (612)
++.++ + ++.+++++.|.++++|.
T Consensus 435 s~Dis~d--~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPD--SQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccC--CceEEEeccCceeeecc
Confidence 99999 5 89999999999999994
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-46 Score=300.28 Aligned_cols=289 Identities=18% Similarity=0.310 Sum_probs=258.0
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
.++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+.. ..+.++-....|..++|+|.|+++|.+|-++ .-.|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-K~haipl~s~WVMtCA~sPSg~~VAcGGLdN---~Csi 123 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-KVHAIPLPSSWVMTCAYSPSGNFVACGGLDN---KCSI 123 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-ceeEEecCceeEEEEEECCCCCeEEecCcCc---eeEE
Confidence 47799999999999999999999999999999999998876 4456777788999999999999999999988 4577
Q ss_pred EEecCC------ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECC-CCCe
Q 007229 132 FMWDSG------TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP-DGSK 204 (612)
Q Consensus 132 ~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 204 (612)
+...+. +..+.+.+|++.+.++.|.+|+. ++|++.|.+..+||+++++.+..+.+|.+.|.+++++| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 777643 45677999999999999999774 99999999999999999999999999999999999999 9999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
+++|+.|+..++||++.+.+.+.| .+|...|.+++|.|+|.-+++|+.|++.++||+ +..+.+..+...
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF---~ghesDINsv~ffP~G~afatGSDD~tcRlyDl----RaD~~~a~ys~~---- 270 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTF---EGHESDINSVRFFPSGDAFATGSDDATCRLYDL----RADQELAVYSHD---- 270 (343)
T ss_pred EEecccccceeeeeccCcceeEee---cccccccceEEEccCCCeeeecCCCceeEEEee----cCCcEEeeeccC----
Confidence 999999999999999999999999 499999999999999999999999999999999 433333222110
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
.
T Consensus 271 -----------------------------------------------------------------~-------------- 271 (343)
T KOG0286|consen 271 -----------------------------------------------------------------S-------------- 271 (343)
T ss_pred -----------------------------------------------------------------c--------------
Confidence 0
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 272 -------------------------------------------------------------------------------- 271 (343)
T KOG0286|consen 272 -------------------------------------------------------------------------------- 271 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
...+|++++||..|++|++|..|..+.+||.-.++. ...+.+|.++|+++..+|||..+++|+.|.+++||.
T Consensus 272 ----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 ----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER--VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----ccCCceeEEEcccccEEEeeecCCceeEeeccccce--EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 012589999999999999999999999999987776 788999999999999999999999999999999994
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.9e-45 Score=326.76 Aligned_cols=577 Identities=20% Similarity=0.233 Sum_probs=401.1
Q ss_pred EEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCC---EEEEeeCcCeEEEeecCCCc-eeeeee
Q 007229 23 LISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGE---WIASADVSGSVRIWGTHNGF-VLKNEF 98 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~---~las~~~d~~i~iwd~~~~~-~~~~~~ 98 (612)
..++.| +..+|+|.+..|.+||..+......+.||..+|+|+.|-|+.+ ++++|+.|+.|++|.+.... .....+
T Consensus 19 v~sw~~-~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~ 97 (764)
T KOG1063|consen 19 VSSWGP-GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI 97 (764)
T ss_pred cccccc-cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee
Confidence 344544 4578999999999999999888888999999999999999888 89999999999999999333 233344
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeec--cCCceEEEEEEcC-CCCEEEEEeecCCeEE
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFD--GHSRRVLSCEFKP-TRPFRIATCGEDFLVN 173 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~--~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~ 173 (612)
.+|... ++++............++ .+.+|+-+..+ +...+. ...-...|+++.| .+.++++.|+.+..|.
T Consensus 98 ~g~~~~--~~cv~a~~~~~~~~~ad~---~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~ 172 (764)
T KOG1063|consen 98 QGHCKE--CVCVVARSSVMTCKAADG---TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVD 172 (764)
T ss_pred cCccee--EEEEEeeeeEEEeeccCc---eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEE
Confidence 444444 444443333332223333 34555553333 222222 2222335666666 6677889999999999
Q ss_pred EEeCCC--CeeeecccccccceEEEEECCCCC---eEEEEEcCCcEEEEecCCCCe---------------------eee
Q 007229 174 FYEGPP--FKFKLSHREHSNFVNCIRFSPDGS---KLISVSSDRKGLIYDGKSGEK---------------------IGE 227 (612)
Q Consensus 174 ~wd~~~--~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~---------------------~~~ 227 (612)
++.-.. .+....+.||.+.|.+++|...+. +|++++.|..||||.+.-+.. ...
T Consensus 173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 997553 455667899999999999987544 889999999999998753330 001
Q ss_pred e-------eccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC--CE
Q 007229 228 F-------SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN--DH 298 (612)
Q Consensus 228 ~-------~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 298 (612)
+ ....+|...|.++.|+|.+..|++++.|.++.+|...+ .++--+...............+++.|++ +.
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~--~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE--NTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCC--ccceEEEEEEeecccccccceeeEEEcCCCCE
Confidence 1 01238999999999999999999999999999999732 3444555555554444445577777774 45
Q ss_pred EEEEEcCCEEEEEEcCCC--CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee----eeeceecccc
Q 007229 299 LITVSLGGIISIFSASNL--DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS----SKLEKKYDAR 372 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~ 372 (612)
+++-+..|..++|...+. ..+.....||.+.|..+.|.+. +.++++.+.|.+-|++-.-..+. ....+.|...
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps-GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD 409 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS-GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD 409 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCC-CCEEEEeccccceeeecccccccceeeeccccccccc
Confidence 888889999999993332 2345567899999999999943 78999999999999986552221 2223339999
Q ss_pred eEEEEe-e-ccEEEEecCCCeEEEEecCCCCCCcc------ceeccCCCcceeeec---CCCCcEE----------EEEe
Q 007229 373 IKCLAA-V-EEVIFTAGFDNKVWRVPLCEGECGDA------EHIDVGSQPLDLSLA---LSSPELA----------LVST 431 (612)
Q Consensus 373 i~~~~~-~-~~~l~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~----------~~~~ 431 (612)
+.|+++ + +-.++++..+..+|+++.+..-.... ........+....++ ...+... +...
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 999999 4 55677777777889998764321100 000000111111110 0000000 0000
Q ss_pred ec-----cEEEeec------------ccceeeecccceEEEEEEccCCCeEEEEecCC-----eEEEEEccCccccccee
Q 007229 432 ES-----GVILLDS------------LKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-----KLHIYSISGNTLTEEMV 489 (612)
Q Consensus 432 ~~-----~~~~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~ 489 (612)
.. ...+..+ .+..+.+.|.+.|.+++.+|+++++|+++... .|++|+..+-.. ...
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~~ 567 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--VQE 567 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh--hhe
Confidence 00 0000000 01112233889999999999999999998654 699999987765 567
Q ss_pred eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee---eecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 490 LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK---LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
+.+|+-.|+.|+||||+++|++.+.|+++.+|........ +.....|..-|.++.|+|++.++||+|.|++|++|..
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 9999999999999999999999999999999987554332 2336779999999999999999999999999999999
Q ss_pred cCCCcceee--eecccccCeeeEEEe--cCc----eEEEccCCCeEEEEEec
Q 007229 567 GKPASSRIT--IKNAHLGGVYGVAFM--DDF----NVVSSGEDACIRVWRLA 610 (612)
Q Consensus 567 ~~~~~~~~~--~~~~h~~~v~~~~~~--~~~----~l~s~~~d~~i~~w~~~ 610 (612)
.....+.+. ....+..+|++++|. +.. .++.|-+.|.|.+|+.+
T Consensus 648 ~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 648 PDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 874111221 344688899999997 222 35667789999999965
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-47 Score=320.46 Aligned_cols=282 Identities=23% Similarity=0.336 Sum_probs=264.2
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEe
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~ 134 (612)
|.+.+|..+.||+|++.|||||.+|.++||+..+.. +...+.+|...+.++.|+|. +..||+++.|+ .+++|..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg---tvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-LLQTLRGHTSRVGAAVFHPVDSDLNLATASADG---TVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-eeEEEeccccceeeEEEccCCCccceeeeccCC---ceeeecc
Confidence 567899999999999999999999999999999996 77899999999999999997 67999999999 5688888
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
+...++..+.+|...|..++|+|+|++ |+|++.|.+-++||+.++..+....||...|.+++|.|||.++++|+.|..-
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 888999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
+|||+++|.++..+ .+|..+|.+++|+|+|..|++|+.|++++|||+ +....
T Consensus 328 RvWDlRtgr~im~L---~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL----R~r~~--------------------- 379 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFL---AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL----RMRSE--------------------- 379 (459)
T ss_pred heeecccCcEEEEe---cccccceeeEeECCCceEEeecCCCCcEEEeee----ccccc---------------------
Confidence 99999999999998 489999999999999999999999999999999 43333
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
...+++|.+-|+.+.|.+..+.+|++++.|+++++|...+..+.....+|.+.|.
T Consensus 380 -------------------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 380 -------------------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred -------------------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 3456679999999999977799999999999999999999999999999999999
Q ss_pred EEEe--eccEEEEecCCCeEEEEe
Q 007229 375 CLAA--VEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 375 ~~~~--~~~~l~~~~~~~~i~~~~ 396 (612)
++.. +++.+++++.|.++++|.
T Consensus 435 s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCCceEEEeccCceeeecc
Confidence 9998 788899999999999995
No 17
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-44 Score=324.90 Aligned_cols=505 Identities=16% Similarity=0.196 Sum_probs=373.0
Q ss_pred CCCCCceeEEEEccCCCEEEEec-C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC--cCeEEEeecC
Q 007229 15 STERGRGILISGNPKTDTILYCN-G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV--SGSVRIWGTH 89 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~--d~~i~iwd~~ 89 (612)
.++|..++|+|||++|+|+|+|. + ..++||+++....+..|..|...|+|++|+|.++|+++.+. |-.|.+||..
T Consensus 75 nssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr 154 (1080)
T KOG1408|consen 75 NSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWR 154 (1080)
T ss_pred cccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhh
Confidence 35778999999999999999997 3 58999999999999999999999999999999999998764 5568889887
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-------------e-------------
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-------------F------------- 143 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-------------~------------- 143 (612)
... ...-..-...|..++|+.||.|+++.+... +.+|.++.+++... +
T Consensus 155 ~N~--~~asnkiss~Vsav~fsEdgSYfvT~gnrH----vk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~g 228 (1080)
T KOG1408|consen 155 VNS--SGASNKISSVVSAVAFSEDGSYFVTSGNRH----VKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVG 228 (1080)
T ss_pred hcc--cccccccceeEEEEEEccCCceeeeeeeee----EEEEEeeccccccCCccccchhhhccccccchhhhhhhcCc
Confidence 553 222333456799999999999999999875 67887775542110 0
Q ss_pred -----------ccC-----------------CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-c-----
Q 007229 144 -----------DGH-----------------SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-H----- 189 (612)
Q Consensus 144 -----------~~~-----------------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~----- 189 (612)
.|| +....||+.+.+ ++++|..+|.|++|+..+.....+++. |
T Consensus 229 icAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r---~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d 305 (1080)
T KOG1408|consen 229 ICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSR---LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSD 305 (1080)
T ss_pred ccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecc---eEEEeeccceeeecCcchhhhccccccccccccc
Confidence 000 011123333333 699999999999999776555444321 0
Q ss_pred ------------------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-----
Q 007229 190 ------------------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD----- 246 (612)
Q Consensus 190 ------------------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~----- 246 (612)
-....++.|.|....|.+...|..++|||+++-..+......-.|...|+.+.-.|-
T Consensus 306 ~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~ 385 (1080)
T KOG1408|consen 306 TANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP 385 (1080)
T ss_pred hhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc
Confidence 012356789998899999999999999999886655443333378888887765551
Q ss_pred ------CCEEEEEeCCCcEEEEEeecCCCCCeeE-eeee---------cc--------C-------------ccccceee
Q 007229 247 ------GKKVLTVSADKSAKVWEILEDGSGGRVI-KTFA---------SS--------T-------------SNAVEDML 289 (612)
Q Consensus 247 ------~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~---------~~--------~-------------~~~~~~~~ 289 (612)
...+++++.|++|++|++..-. .+... +.+. .. . .....-..
T Consensus 386 ~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~ 464 (1080)
T KOG1408|consen 386 TAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRA 464 (1080)
T ss_pred ccccCCccceeEecCCCcEEEeeccccc-ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEE
Confidence 1248899999999999994210 11110 0000 00 0 00111233
Q ss_pred eeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE--ecCCcEEEEEecCCcEEEEEcCCceee-eec
Q 007229 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL--KISQQTILSSSYDGAIIKWIRGVGYSS-KLE 366 (612)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~ 366 (612)
.++..+++++++|...|.+++|++.... ....+..|...|.++.++ ....++|++++.|.-|.++|...+... ...
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence 4445558899999999999999977644 345677899999999999 344678999999999999999766544 455
Q ss_pred eecccceEEEEe--ec--cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 367 KKYDARIKCLAA--VE--EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 367 ~~~~~~i~~~~~--~~--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
..|...|+++.| .+ ..+++++.|..+.+--..+.... .++.
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g--------------------------------~~f~--- 588 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG--------------------------------RLFP--- 588 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCc--------------------------------eecc---
Confidence 569999999999 33 56888888886654322211100 0000
Q ss_pred ceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec---cccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE---KHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
.......+..+..+++.|..+++++++.|..|+||++++++. .+.++ .|.+....+...|.|.|||+.+.|+++.
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce--eeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 000011234688999999999999999999999999999987 45554 4667788899999999999999999999
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++|..+++++ ....+|...|+.+.|++|-+.|++.+.||+|.||.+..
T Consensus 667 ~~Df~sgEcv-A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECV-AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhh-hhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999998 66778999999999999999999999999999999864
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-43 Score=281.91 Aligned_cols=295 Identities=19% Similarity=0.263 Sum_probs=248.1
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEec--CCEEEEEeCC-----CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeE
Q 007229 11 ACAPSTERGRGILISGNPKTDTILYCN--GRSVLIRYLD-----KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSV 83 (612)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i 83 (612)
......|++.|+.++..+++.-+++.. |..+.+|++. .|..++.+.||+..|+.++.++||++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 334456789999999999977666665 8999999875 577789999999999999999999999999999999
Q ss_pred EEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccC--CceEEEEEEcCCC-
Q 007229 84 RIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGH--SRRVLSCEFKPTR- 159 (612)
Q Consensus 84 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~--~~~v~~~~~~~~~- 159 (612)
++||+.+++ ..+.+.+|...|.+++|+||.+.+++++.|. .+.+|+ .+.+..++..+ .+.|.|+.|+|+.
T Consensus 88 rlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDk-----Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 88 RLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK-----TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred EEEEecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcc-----eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 999999997 6679999999999999999999999999998 466677 45566665544 7899999999984
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+.++++++.|++|++||+.+.+....+.+|++.++.+++||||..+++|+.||.+.+||++.++.++.+ .+...|.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl----~a~~~v~ 237 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL----EAFDIVN 237 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----cCCCeEe
Confidence 337999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
+++|+|+.-.|+.+ .+..|+|||+ +++.++..+.......
T Consensus 238 sl~fspnrywL~~a-t~~sIkIwdl----~~~~~v~~l~~d~~g~----------------------------------- 277 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAA-TATSIKIWDL----ESKAVVEELKLDGIGP----------------------------------- 277 (315)
T ss_pred eEEecCCceeEeec-cCCceEEEec----cchhhhhhcccccccc-----------------------------------
Confidence 99999987666655 4557999999 8888887776543111
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
..........+++|+ .++..|++|..|+.|++|.+.
T Consensus 278 --s~~~~~~~clslaws-~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 --SSKAGDPICLSLAWS-ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred --ccccCCcEEEEEEEc-CCCcEEEeeecCCcEEEEEee
Confidence 111122233455555 238899999999999999754
No 19
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-42 Score=307.02 Aligned_cols=464 Identities=17% Similarity=0.235 Sum_probs=339.2
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+|.++.|+|...+++++- +|.|.|||.++...++.+.-.+-+|.+..|-+-.+++++|++|..|+||++.+.+ ..
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-kV 90 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-KV 90 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce-ee
Confidence 456899999999999999987 9999999999999999999999999999999999999999999999999999999 55
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
+.+..|..-|++++.+|...+++++++|- .|++|+|+ ...+.++|.||...|.+++|+|.++..+++++-|++|++
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm---~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDM---TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCcc---EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 69999999999999999999999999998 78999999 567889999999999999999999889999999999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCC--CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDG--SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
|.+.+..+..++.+|...|+|+.|-+-| .+|++|+.|.+++|||.++..+++++ .+|...|..++|+|.-..+++
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL---eGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL---EGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh---hcccccceEEEecCCCcEEEE
Confidence 9999999999999999999999998754 69999999999999999999999999 599999999999999999999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
|++||++++|+. .+.++..++... ...+++
T Consensus 245 gsEDGTvriWhs----~Ty~lE~tLn~g----------------------------------------------leRvW~ 274 (794)
T KOG0276|consen 245 GSEDGTVRIWNS----KTYKLEKTLNYG----------------------------------------------LERVWC 274 (794)
T ss_pred ecCCccEEEecC----cceehhhhhhcC----------------------------------------------CceEEE
Confidence 999999999998 666655554432 223333
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCC-eEEEE------ecCCCCCCcc
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN-KVWRV------PLCEGECGDA 405 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~-~i~~~------~~~~~~~~~~ 405 (612)
++.... ...++.|..+|.+.+= +. ...|..++...++.+.+...+- .+.+- ++..++....
T Consensus 275 I~~~k~-~~~i~vG~Deg~i~v~-lg----------reeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~L 342 (794)
T KOG0276|consen 275 IAAHKG-DGKIAVGFDEGSVTVK-LG----------REEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPL 342 (794)
T ss_pred EeecCC-CCeEEEeccCCcEEEE-cc----------CCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccc
Confidence 333311 2334444444443321 11 1111122222222222111110 00000 1222222111
Q ss_pred c---eeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCc
Q 007229 406 E---HIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGN 482 (612)
Q Consensus 406 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 482 (612)
. .-...-.|..++.+|+| +++++..++..+++..... ....-+.-....|++|....++-.+++.|.++ ++.
T Consensus 343 svKeLgs~eiyPq~L~hsPNG-rfV~VcgdGEyiIyTala~--RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knf 417 (794)
T KOG0276|consen 343 SVKELGSVEIYPQTLAHSPNG-RFVVVCGDGEYIIYTALAL--RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNF 417 (794)
T ss_pred hhhhccccccchHHhccCCCC-cEEEEecCccEEEEEeeeh--hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecc
Confidence 1 12223356778888888 5566666666665542111 11123345667899998888888888889988 333
Q ss_pred ccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEE
Q 007229 483 TLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVI 562 (612)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~ 562 (612)
+. ...+... .. ...--.|.+|...+ ++.+++||.++++.+... . -....+.|+.+|.+++.++.|. .+
T Consensus 418 ke--~ksi~~~---~~-~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI-~---v~~k~v~w~d~g~lVai~~d~S-fy 485 (794)
T KOG0276|consen 418 KE--HKSIRPD---MS-AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRI-E---VTSKHVYWSDNGELVAIAGDDS-FY 485 (794)
T ss_pred ee--ccccccc---cc-eeeecCCceEEEEe-CCeEEEEEcccceEEEEE-e---eccceeEEecCCCEEEEEecCc-ee
Confidence 32 2222211 01 11222455565554 568999999999987443 2 2455789999999998887665 55
Q ss_pred EEEc
Q 007229 563 IYEI 566 (612)
Q Consensus 563 iwd~ 566 (612)
++.+
T Consensus 486 il~~ 489 (794)
T KOG0276|consen 486 ILKF 489 (794)
T ss_pred EEEe
Confidence 5544
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-43 Score=280.73 Aligned_cols=291 Identities=21% Similarity=0.302 Sum_probs=247.6
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC-----CCeeeecccccccceEEEEECCCCCeEEEEEcCCc
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-----PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
....+++|++.|+.++..+.++.++++++.|.++.+|++. .|..++.+.||+..|..++.++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 4557899999999999999987799999999999999754 46778889999999999999999999999999999
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
+++||+.+++..+.| .+|...|.+++|++|.+.+++|+.|.+|++|+. -
T Consensus 87 lrlWDl~~g~~t~~f---~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt-----~----------------------- 135 (315)
T KOG0279|consen 87 LRLWDLATGESTRRF---VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT-----L----------------------- 135 (315)
T ss_pred EEEEEecCCcEEEEE---EecCCceEEEEecCCCceeecCCCcceeeeeee-----c-----------------------
Confidence 999999999998888 499999999999999999999999999999998 1
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
+...++...++. +
T Consensus 136 ----------------------------------------------g~ck~t~~~~~~-~-------------------- 148 (315)
T KOG0279|consen 136 ----------------------------------------------GVCKYTIHEDSH-R-------------------- 148 (315)
T ss_pred ----------------------------------------------ccEEEEEecCCC-c--------------------
Confidence 122222222211 1
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceE
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTV 453 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 453 (612)
.-|
T Consensus 149 -----------------------------------------------------------------------------~WV 151 (315)
T KOG0279|consen 149 -----------------------------------------------------------------------------EWV 151 (315)
T ss_pred -----------------------------------------------------------------------------CcE
Confidence 238
Q ss_pred EEEEEccC--CCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 454 TACAIAPD--GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 454 ~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
+|+.|+|+ ..+++.++.|++|++||+++.++ ...+.+|++.++.+++||||.++++|+.||.+.+||+..++.+ .
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l-y 228 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL-Y 228 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee-E
Confidence 88999997 78899999999999999998887 7888999999999999999999999999999999999999986 4
Q ss_pred cccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc----c-----ccCeeeEEEe-cCceEEEccCC
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA----H-----LGGVYGVAFM-DDFNVVSSGED 601 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----h-----~~~v~~~~~~-~~~~l~s~~~d 601 (612)
.+. |...|.+++|+|+.-.|+.+. +..|+|||+++ + .++..++. . .-...+++|+ ||..|+++-.|
T Consensus 229 sl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~-~-~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 229 SLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLES-K-AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred ecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccc-h-hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 344 889999999999987777665 44599999998 4 44443321 1 2245788999 99999999999
Q ss_pred CeEEEEEecc
Q 007229 602 ACIRVWRLAT 611 (612)
Q Consensus 602 ~~i~~w~~~~ 611 (612)
+.|++|.+..
T Consensus 305 ~~irv~qv~~ 314 (315)
T KOG0279|consen 305 NVIRVWQVAK 314 (315)
T ss_pred CcEEEEEeec
Confidence 9999999854
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-43 Score=275.88 Aligned_cols=295 Identities=19% Similarity=0.295 Sum_probs=250.6
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe--eeeeeccCCccc
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK--IGEFSSEDGHHG 236 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~ 236 (612)
.+-+|++++.|.+||+|...+|.+..+++.....|+.+.+.|+++.||+++. ..|++||++++.. +..+ ++|..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~---e~h~k 84 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF---EGHTK 84 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE---eccCC
Confidence 3448999999999999999999999999988899999999999999998875 6799999998776 4455 58999
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
.|.++.|..+|+++++|++||+++|||+ +...+.+
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdl----R~~~~qR----------------------------------------- 119 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDL----RSLSCQR----------------------------------------- 119 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEec----cCcccch-----------------------------------------
Confidence 9999999999999999999999999999 4422222
Q ss_pred CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
...|..+|+++...+. ...|++|..+|.|++||+....+...+..
T Consensus 120 ------~~~~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liP---------------------------- 164 (311)
T KOG0315|consen 120 ------NYQHNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIP---------------------------- 164 (311)
T ss_pred ------hccCCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCC----------------------------
Confidence 2236678888888732 77899999999999999987654332210
Q ss_pred cCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEE
Q 007229 397 LCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHI 476 (612)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 476 (612)
+....+.++.+.|||.+++.+...|..++
T Consensus 165 ---------------------------------------------------e~~~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 165 ---------------------------------------------------EDDTSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred ---------------------------------------------------CCCcceeeEEEcCCCcEEEEecCCccEEE
Confidence 01235889999999999999999999999
Q ss_pred EEccCcc----cccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE
Q 007229 477 YSISGNT----LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 477 ~d~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 552 (612)
|++-+.. +.+...++.|++-|..+.+|||+++||+++.|.+++||+.++.-.....+.+|...+..++||.||+||
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 9986543 355677899999999999999999999999999999999999855556788999999999999999999
Q ss_pred EEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 553 ~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
++|+.|+.+++|+++. + +.+....+|..+..+++..
T Consensus 274 vTassd~~~rlW~~~~-~-k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSA-G-KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCCceeeccccc-C-ceeeecCCcccccEEEEee
Confidence 9999999999999998 6 7888889998887776653
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-41 Score=308.37 Aligned_cols=499 Identities=16% Similarity=0.206 Sum_probs=362.3
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
+...+|-.++|+|...+|+++- .|.|.+||..-+.++..|.+|.++|..++|+|++.+++||++|-.|+||++.+.++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc- 85 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC- 85 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-
Confidence 3456888999999999999998 89999999999999999999999999999999999999999999999999999984
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
..++.+|-.-|..+.|++.-.+++++++|. +|+||+|++++++..+.||...|.|..|+|... +++++|-|.+||+
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQ---TIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQ---TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRV 161 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCC---eEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEE
Confidence 458999999999999999999999999998 789999999999999999999999999999888 7999999999999
Q ss_pred EeCCCCe-----------------------------eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 175 YEGPPFK-----------------------------FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 175 wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
||+...+ ..+.+.||...|+.++|+|.-.++++|+.|+.|++|.+..-+..
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 9964211 12346789999999999999999999999999999998765443
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEc
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSL 304 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 304 (612)
. ...-.+|...|.++-|+|..+++++.++|++|++||+ .....+++|+..+ ...+.++.. .-.+++++.
T Consensus 242 E-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm----~kRt~v~tfrren-----dRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 242 E-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM----TKRTSVQTFRREN-----DRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred e-ehhhhcccCCcceEEecCccceeEecCCCccEEEEec----ccccceeeeeccC-----CeEEEEEecCCcceeeeec
Confidence 2 2223599999999999999999999999999999999 8889999987654 445555544 456777777
Q ss_pred CCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-----cccceEEEEee
Q 007229 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-----YDARIKCLAAV 379 (612)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i~~~~~~ 379 (612)
|+-+.+|.+.... +..+ .+ ++.+.-.- |..|+.+|+.+.+....... ...++.++.++
T Consensus 312 DsGm~VFkleREr-----------pa~~--v~---~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYN 374 (1202)
T KOG0292|consen 312 DSGMIVFKLERER-----------PAYA--VN---GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYN 374 (1202)
T ss_pred CCceEEEEEcccC-----------ceEE--Ec---CCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeec
Confidence 7777777755321 2222 22 33333333 88999999988554443221 33567778872
Q ss_pred ---ccEEEEecC-CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe-eccEEEee-cccceeeecccceE
Q 007229 380 ---EEVIFTAGF-DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST-ESGVILLD-SLKVMSKIDLGFTV 453 (612)
Q Consensus 380 ---~~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i 453 (612)
+-.+++... .+...++.+................+..-++--...++++... ...+.+-+ ..+..+.+......
T Consensus 375 pae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~ 454 (1202)
T KOG0292|consen 375 PAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPEST 454 (1202)
T ss_pred cccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccc
Confidence 333444433 3455566655543221111111111111121112223333333 22233222 33334444444455
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
..+-+.-.|.+|+. ....|.+||++.... ...++ -..+.-+.||+|..++|.-+. .+|.|.+.+-.-. ..+
T Consensus 455 ~~IF~ag~g~lll~--~~~~v~lfdvQq~~~--~~si~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~l~--~si 525 (1202)
T KOG0292|consen 455 DDIFYAGTGNLLLR--SPDSVTLFDVQQKKK--VGSIK--VSKVKYVVWSNDMSRVALLSK-HTITIADKKLELL--CSI 525 (1202)
T ss_pred cceeeccCccEEEE--cCCeEEEEEeecceE--EEEEe--cCceeEEEEcCccchhhhccc-ceEEEEecchhhe--ecc
Confidence 55666666766654 334799999987765 33333 357899999999999888776 5888888543322 111
Q ss_pred cccccceeEEEecCCCcEEEEee
Q 007229 534 LFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
...-+|.+-+|..+|-+|.+..
T Consensus 526 -hEtiriksgawde~gVfiYtT~ 547 (1202)
T KOG0292|consen 526 -HETIRIKSGAWDEDGVFIYTTL 547 (1202)
T ss_pred -hheeEeeeceeccCceEEEEeh
Confidence 1345678888988877666554
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=277.80 Aligned_cols=285 Identities=17% Similarity=0.273 Sum_probs=255.3
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCC--
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNG-- 91 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~-- 91 (612)
.+|.++|.++.|++|.++|++++ ||.+.|||.-+....+.+.-....|..++|+|.|+++|.|+-|+...||++.+.
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 46788999999999999999999 999999999988888888888999999999999999999999999999999865
Q ss_pred c---eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC-CCCEEEEEee
Q 007229 92 F---VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFRIATCG 167 (612)
Q Consensus 92 ~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~ 167 (612)
+ ...+++.+|.+.+.++.|.+|+ .|++++.|. ..-+|+.++++.+..|.+|.+.|.+++++| +++ .+++|+
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~---TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~ 206 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDM---TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGG 206 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCC-ceEecCCCc---eEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecc
Confidence 2 2667899999999999999966 566666665 457888889999999999999999999999 666 799999
Q ss_pred cCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 168 EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
-|+..++||++.+.+.+++.+|+..|+++.|.|+|.-+++|+.|++.++||++..+.+..+... ....+|++++|+..|
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAFSKSG 285 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999999999988533 556789999999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
++|+.|..|.++.+||. -.++.+ ..+.+|.
T Consensus 286 RlLfagy~d~~c~vWDt----lk~e~v----------------------------------------------g~L~GHe 315 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDT----LKGERV----------------------------------------------GVLAGHE 315 (343)
T ss_pred cEEEeeecCCceeEeec----cccceE----------------------------------------------EEeeccC
Confidence 99999999999999998 333332 4566899
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
+.|.++..++ ++..+++|+.|..+++|.
T Consensus 316 NRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 NRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CeeEEEEECC-CCcEEEecchhHheeecC
Confidence 9999999983 288999999999999993
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-40 Score=302.68 Aligned_cols=556 Identities=14% Similarity=0.119 Sum_probs=414.1
Q ss_pred EEEccCC-CEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 24 ISGNPKT-DTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 24 ~~~s~d~-~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
..+..-| .++++++ |+...+||.++-..+..-..+...|+|++-..+--|.|++ ..|.+|. .++.+......|
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g---~~i~~~~--rgk~i~~~~~~~ 113 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASG---NKIYAYA--RGKHIRHTTLLH 113 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecC---cEEEEEE--ccceEEEEeccc
Confidence 3444333 3344444 9999999999988887666899999999977765444444 3566664 444466777788
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ce----eeeeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEE
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TT----VGDFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFY 175 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~----~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~w 175 (612)
...|.-+. |-|.+++++..++. +.+|..... ++ +..++...+.|+++. +|.- =..++.|+.+|.+.+|
T Consensus 114 ~a~v~~l~--~fGe~lia~d~~~~---l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~ 187 (910)
T KOG1539|consen 114 GAKVHLLL--PFGEHLIAVDISNI---LFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLW 187 (910)
T ss_pred cceEEEEe--eecceEEEEEccCc---EEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEE
Confidence 87776654 45778888887772 344444342 11 112222333366654 4432 1258999999999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc-cccEEEEEEecCCCEE-EEE
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH-HGSIYAVSWSPDGKKV-LTV 253 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l-~~~ 253 (612)
++++++.+++++++...|+++.=+|-=..++.|..+|+|.+++++.++.+..+ .| .++|++++|..||+.+ +++
T Consensus 188 Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF----k~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 188 NVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF----KQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE----EccccceeEEEeccCCCeeEEec
Confidence 99999999999999999999999998889999999999999999999999999 55 4999999999999865 555
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC---CCceeecCcccce
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD---KAPLSFSGHVKNV 330 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~v 330 (612)
+..|.+.+||+ +..+........+...+. ...+......+++.+.|+.+++|-...+. ..++...||..+.
T Consensus 264 ~~~G~m~~wDL----e~kkl~~v~~nah~~sv~--~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 264 RSNGDMAFWDL----EKKKLINVTRNAHYGSVT--GATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred cCCceEEEEEc----CCCeeeeeeeccccCCcc--cceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 56699999999 777776666543311111 11222336678888889988887655332 3455667899999
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece------------------ecccceEEEEee-------ccEEEE
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK------------------KYDARIKCLAAV-------EEVIFT 385 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------------------~~~~~i~~~~~~-------~~~l~~ 385 (612)
.++.|....+..+.+++.|++++.+++......+... ..-.+|..+++. .+.+..
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 9999996568999999999999998765332211111 023456666662 334455
Q ss_pred ecCCCeEEEEecCCCCCCccceec------cCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeee----cccceE
Q 007229 386 AGFDNKVWRVPLCEGECGDAEHID------VGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKI----DLGFTV 453 (612)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~i 453 (612)
.-.+...+.|+..+.... ..... ......+++.++.|...++..+.+.+.+++ .+-....+ .|+.+|
T Consensus 418 h~~~~~~~tW~~~n~~~G-~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V 496 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSG-RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEV 496 (910)
T ss_pred ecCcceEEEEeccCcccc-cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCce
Confidence 556668999999887653 22222 345677888999997666666677787887 33333444 488999
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
+.++...-++.+++++.+|.+.+||..+..+ ...+. -...++++..+.....+|.+..|-.|+++|..+.+.. ..+
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l--~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-R~f 572 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVL--KKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-REF 572 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcce--eeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-HHh
Confidence 9999999999999999999999999998775 33333 2357888999998899999999999999999999887 668
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCC-CeEEEEE
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGED-ACIRVWR 608 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d-~~i~~w~ 608 (612)
.+|...|++++|||||++|++++.|++|++||+.+ + .++-.+. -..+.+++.|+ .+.+|+++..| .-|++|.
T Consensus 573 ~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt-~-~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 573 WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT-G-TLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred hccccceeeeEeCCCCcEEEEeecCCcEEEEeccC-c-ceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 88999999999999999999999999999999999 5 4555443 56789999999 99999999988 6799995
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-41 Score=307.88 Aligned_cols=488 Identities=15% Similarity=0.174 Sum_probs=380.1
Q ss_pred CCEEEEec-CCEEEEEeCCCC-----ceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 30 TDTILYCN-GRSVLIRYLDKP-----LHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 30 ~~~l~~~~-~~~i~i~~~~~~-----~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
|.+++.+. ++.+.||+...+ .....++...+.|+++. +|. =+.++.|+.+|.+.||++.+++ +..++.++
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K-~v~~f~~~ 201 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK-VVYTFQEF 201 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCc-EEEEeccc
Confidence 44555554 678888887763 11122222222366654 453 3568889999999999999999 66789999
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
...|+++.-+|-=..++.|..++ .|.+++...++.+.+|+...++|+.++|..||+.++++|+..|.+.+||++..+
T Consensus 202 ~s~IT~ieqsPaLDVVaiG~~~G---~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 202 FSRITAIEQSPALDVVAIGLENG---TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred ccceeEeccCCcceEEEEeccCc---eEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 99999999999888999988888 578888889999999997679999999999999999999999999999999999
Q ss_pred eeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee-eeeeccCCccccEEEEEEe-cCCCEEEEEeCCCc
Q 007229 182 FKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI-GEFSSEDGHHGSIYAVSWS-PDGKKVLTVSADKS 258 (612)
Q Consensus 182 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~ 258 (612)
.+..++ .|.+.|....|.|....+++++.|+.+++|=.+++.-. +.+....+|..|..++.|. .+|.++.+++.|++
T Consensus 279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 888766 78899999999999999999999999998865544332 2223346999999999998 68999999999999
Q ss_pred EEEEEeecCCCCCeeEeeee--------cc-Cccccceeeeeeecc-------CCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 259 AKVWEILEDGSGGRVIKTFA--------SS-TSNAVEDMLVGCLWQ-------NDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
++.+++.....+.+..+... .. ........+..+.+. .+.+.+--.+...+.|+......-...
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 99998743222222222110 00 001111233333333 445555556678899997765442333
Q ss_pred ecC-----cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece---ecccceEEEEee--ccEEEEecCCCeE
Q 007229 323 FSG-----HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK---KYDARIKCLAAV--EEVIFTAGFDNKV 392 (612)
Q Consensus 323 ~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~~~--~~~l~~~~~~~~i 392 (612)
+.. ....+++++.+ ..+++.+.|+..|.|-+|+++++....... .|..+|..++.+ +..+++++.+|.+
T Consensus 439 L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred ecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 221 23455555555 338999999999999999999998888773 599999999994 5679999999999
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG 472 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 472 (612)
.+|+..+... ...+.....++++..+.....++++..|-
T Consensus 518 kfw~f~~k~l-----------------------------------------~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 518 KFWDFKKKVL-----------------------------------------KKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred EEEecCCcce-----------------------------------------eeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 9999987653 23344556788888998889999999999
Q ss_pred eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 552 (612)
.|+++|..+.+. .+.+.+|.+.|++++|||||++|++++.|++|++||+.++.++-... -..+++++.|||+|.+|
T Consensus 557 ~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~--vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 557 SIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDFL 632 (910)
T ss_pred eEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--cCCcceeeEECCCCCEE
Confidence 999999999888 78899999999999999999999999999999999999999874332 46789999999999999
Q ss_pred EEeecC-cEEEEEEccC
Q 007229 553 ATGSID-TCVIIYEIGK 568 (612)
Q Consensus 553 ~s~~~d-~~i~iwd~~~ 568 (612)
|++..| .-|++|.-..
T Consensus 633 AT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 633 ATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEEEecCceEEEEEchh
Confidence 999988 5699997654
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-42 Score=284.43 Aligned_cols=343 Identities=17% Similarity=0.250 Sum_probs=292.4
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
.+..|..|+..|.+++.+|+.+++|||+.|..-.||++.+++ ....+.+|+..|+++.||.||.+||+++-++ .+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG---~v~ 131 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSG---KVL 131 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCc---cEE
Confidence 355688999999999999999999999999999999999999 6678999999999999999999999999888 578
Q ss_pred EEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 131 AFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
||..+++.....+...-..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+.||+.++++=.|.|+|+.++++..
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 888889999888887788899999999988 7999999999999999998888899999999999999999999999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
||+|++||+.+++++..+... ...+..++.++.++..++.|..++.+++-+. .+++.+.......
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~--e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~----~sgKVv~~~n~~~--------- 275 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQA--EGLELPCISLNLAGSTLTKGNSEGVACGVNN----GSGKVVNCNNGTV--------- 275 (399)
T ss_pred CceEEEEecCCCceeEEeccc--ccCcCCccccccccceeEeccCCccEEEEcc----ccceEEEecCCCC---------
Confidence 999999999999999988432 3456778899999999999999999888876 5554443322100
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
......+..
T Consensus 276 -----------------------------~~l~~~~e~------------------------------------------ 284 (399)
T KOG0296|consen 276 -----------------------------PELKPSQEE------------------------------------------ 284 (399)
T ss_pred -----------------------------ccccccchh------------------------------------------
Confidence 000000000
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
..
T Consensus 285 ------------------------------------------------------------------------------~~ 286 (399)
T KOG0296|consen 285 ------------------------------------------------------------------------------LD 286 (399)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 01
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 530 (612)
..|.++.++..-.+.|+|+-||+|.|||+...++ +..-.|..+|+.+.|-+ ..+|++++.||.|+.||.++++++
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~---R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~- 361 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL---RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK- 361 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchh---heeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE-
Confidence 1244455666677899999999999999998876 44556888999999998 789999999999999999999998
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
..+.+|..+|.+++++|+.++++++|.|++.+||+++
T Consensus 362 ~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 362 FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 5688999999999999999999999999999999875
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-41 Score=296.47 Aligned_cols=462 Identities=19% Similarity=0.274 Sum_probs=344.2
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
+.+..|+.+|.++.|+|...+++++-.+|.|.|||.++.. +.+.+....-+|++..|-+-.++++++++|. .|+|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-mVksfeV~~~PvRa~kfiaRknWiv~GsDD~---~IrVf 82 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-MVKSFEVSEVPVRAAKFIARKNWIVTGSDDM---QIRVF 82 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-eeeeeeecccchhhheeeeccceEEEecCCc---eEEEE
Confidence 3456699999999999999999999999999999999988 6778888999999999999999999999998 78999
Q ss_pred EecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECC-CCCeEEEEEc
Q 007229 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSP-DGSKLISVSS 210 (612)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 210 (612)
++++++++..|..|.+.|++++.+|..++ +++++.|-+|++||.+. ..+.+++.||+.-|.+++|.| |.+.+++++-
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999999996 99999999999999875 467778999999999999999 5678999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC--CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG--KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
|++|+||.+.+..+..++ ++|...|.++.|-+.| .+|++|+.|.++++||. ++..++
T Consensus 162 DrTVKVWslgs~~~nfTl---~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy----Qtk~CV-------------- 220 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTL---EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY----QTKSCV-------------- 220 (794)
T ss_pred cccEEEEEcCCCCCceee---eccccCcceEEeccCCCcceEEecCCCceEEEeec----chHHHH--------------
Confidence 999999999999999888 4999999999999844 69999999999999998 555554
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
+++.||...|..+.|++. -.++++|++||++++|+..+-+.......
T Consensus 221 --------------------------------~TLeGHt~Nvs~v~fhp~-lpiiisgsEDGTvriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 221 --------------------------------QTLEGHTNNVSFVFFHPE-LPIIISGSEDGTVRIWNSKTYKLEKTLNY 267 (794)
T ss_pred --------------------------------HHhhcccccceEEEecCC-CcEEEEecCCccEEEecCcceehhhhhhc
Confidence 556788999999988842 67999999999999999999888888777
Q ss_pred cccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee-------
Q 007229 369 YDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD------- 439 (612)
Q Consensus 369 ~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 439 (612)
.-.+++|++. .++.++.|..+|.+. ..+....+ .++..+.+ .++....+.+.-.+
T Consensus 268 gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP-------------~vsMd~~g--KIiwa~~~ei~~~~~ks~~~~ 331 (794)
T KOG0276|consen 268 GLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP-------------AVSMDSNG--KIIWAVHSEIQAVNLKSVGAQ 331 (794)
T ss_pred CCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC-------------ceeecCCc--cEEEEcCceeeeeeceeccCc
Confidence 8899999997 455566666555443 33333222 12222222 22222222221111
Q ss_pred ----cccceee--ec---ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEE
Q 007229 440 ----SLKVMSK--ID---LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA 510 (612)
Q Consensus 440 ----~~~~~~~--~~---~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (612)
+++++.. -+ ..-....++-||+|++++++ .||.-.||..-.-+ ..+-+.-....|++|....|
T Consensus 332 ~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~R-------nK~fG~~~eFvw~~dsne~a 403 (794)
T KOG0276|consen 332 KEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALALR-------NKAFGSGLEFVWAADSNEFA 403 (794)
T ss_pred ccccCCccccchhhhccccccchHHhccCCCCcEEEEe-cCccEEEEEeeehh-------hcccccceeEEEcCCCCeEE
Confidence 1111110 00 11223467889999877765 57888888632211 12335567789999988888
Q ss_pred EEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 511 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
.-..++.|+++ ++.+.. +.+..... +..--.|.+|...+. +.+++||.++ + ..+..+.-. ...+.|+
T Consensus 404 vRes~~~vki~--knfke~-ksi~~~~~----~e~i~gg~Llg~~ss-~~~~fydW~~-~-~lVrrI~v~---~k~v~w~ 470 (794)
T KOG0276|consen 404 VRESNGNVKIF--KNFKEH-KSIRPDMS----AEGIFGGPLLGVRSS-DFLCFYDWES-G-ELVRRIEVT---SKHVYWS 470 (794)
T ss_pred EEecCCceEEE--ecceec-cccccccc----eeeecCCceEEEEeC-CeEEEEEccc-c-eEEEEEeec---cceeEEe
Confidence 88888999998 454443 22221111 222224556666654 5599999998 5 666665533 4567899
Q ss_pred cCceEEEccCCCeEEEEEec
Q 007229 591 DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 591 ~~~~l~s~~~d~~i~~w~~~ 610 (612)
|++.|+..+.|....+..++
T Consensus 471 d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 471 DNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred cCCCEEEEEecCceeEEEec
Confidence 55444444444455555543
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.7e-42 Score=268.26 Aligned_cols=298 Identities=19% Similarity=0.320 Sum_probs=252.3
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCc
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSR 148 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~ 148 (612)
.-+||+++.|.+||+|...+|.+ ..++....+.|+.+...||++.||+++... |++++.++++ ++.++.+|..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C-~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh----vRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC-SRTIQHPDSQVNRLEITPDKKDLAAAGNQH----VRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE-EEEEecCccceeeEEEcCCcchhhhccCCe----eEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999985 447777788999999999999999999886 7899988544 7999999999
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.|+++.|..+|++ +++|++||+++|||++...+.+.++ |..+|+++..+|+...|+++..+|.|++||+.+..+...+
T Consensus 85 NVtaVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 85 NVTAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred ceEEEEEeecCeE-EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 9999999999996 9999999999999999977666664 7799999999999999999999999999999988777666
Q ss_pred eccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 229 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
. .....+|.++...|||++++.+...|...+|++ ........+.
T Consensus 163 i--Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l----~~~~~~s~l~------------------------------ 206 (311)
T KOG0315|consen 163 I--PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL----LNHQTASELE------------------------------ 206 (311)
T ss_pred C--CCCCcceeeEEEcCCCcEEEEecCCccEEEEEc----cCCCccccce------------------------------
Confidence 3 244578999999999999999999999999998 3211111000
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecC
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGF 388 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~ 388 (612)
++..++.
T Consensus 207 ----------P~~k~~a--------------------------------------------------------------- 213 (311)
T KOG0315|consen 207 ----------PVHKFQA--------------------------------------------------------------- 213 (311)
T ss_pred ----------Ehhheec---------------------------------------------------------------
Confidence 0011111
Q ss_pred CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEE
Q 007229 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVG 468 (612)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 468 (612)
|...+..+.+|||+++||++
T Consensus 214 ------------------------------------------------------------h~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 214 ------------------------------------------------------------HNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ------------------------------------------------------------ccceEEEEEECCCCcEEEee
Confidence 23357788899999999999
Q ss_pred ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEec
Q 007229 469 GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546 (612)
Q Consensus 469 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 546 (612)
+.|.+++||+.++. +.....+++|...+...+||.||+||++|+.|+.+++|++..++.+ ....+|..+..|++..
T Consensus 234 ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v-~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV-RQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee-eecCCcccccEEEEee
Confidence 99999999999987 4557889999999999999999999999999999999999999987 5677888887777754
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-42 Score=291.62 Aligned_cols=325 Identities=23% Similarity=0.345 Sum_probs=274.0
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC--e--eeeccc----------ccccceEEEEECCCCCeEEEEE
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF--K--FKLSHR----------EHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~--~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
..|..+|.+.+|+|-...++++++.|-+.++|++... . .+..++ ..+..|++++|+.+|..||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 3499999999999987767999999999999998741 1 111111 1235799999999999999999
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
.||.+++|+ ..|..+..+ ..|.+||.++.|+..|.||++++.|+++.+||. .++...+.+..
T Consensus 255 ~~G~~riw~-~~G~l~~tl---~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~----~~g~~~q~f~~---------- 316 (524)
T KOG0273|consen 255 EDGEARIWN-KDGNLISTL---GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA----HTGTVKQQFEF---------- 316 (524)
T ss_pred cCcEEEEEe-cCchhhhhh---hccCCceEEEEEcCCCCEEEeccCCccEEEEec----cCceEEEeeee----------
Confidence 999999999 467777777 489999999999999999999999999999999 77777766654
Q ss_pred eeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceec
Q 007229 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKY 369 (612)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 369 (612)
|..+-..+.|.+ ...+++.+.|+.|+++.+....+......
T Consensus 317 ------------------------------------~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~G- 357 (524)
T KOG0273|consen 317 ------------------------------------HSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIG- 357 (524)
T ss_pred ------------------------------------ccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeec-
Confidence 333445566766 78899999999999997766554443332
Q ss_pred ccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecc
Q 007229 370 DARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDL 449 (612)
Q Consensus 370 ~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (612)
|
T Consensus 358 -------------------------------------------------------------------------------H 358 (524)
T KOG0273|consen 358 -------------------------------------------------------------------------------H 358 (524)
T ss_pred -------------------------------------------------------------------------------c
Confidence 4
Q ss_pred cceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCC---------cEEEEEcCCCeEEE
Q 007229 450 GFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDV---------SMFASADGNREAIV 520 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~d~~i~i 520 (612)
..+|.++.|.|.+.+|++++.|++++||+...... ...+.+|+..|..+.|+|+| ..+++++.|++|++
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 45688899999999999999999999999877665 68899999999999999965 47999999999999
Q ss_pred EecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEcc
Q 007229 521 WDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSG 599 (612)
Q Consensus 521 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~ 599 (612)
||+..+.++. .+..|..+|.+++|||+|++||+|+.||.|.+|+.++ + +.++.+.+ .+.|..++|+ ++.+|..+-
T Consensus 437 wdv~~gv~i~-~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~-~-~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 437 WDVESGVPIH-TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT-G-KLVKSYQG-TGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred EEccCCceeE-eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc-h-heeEeecC-CCeEEEEEEcCCCCEEEEEe
Confidence 9999999984 5666999999999999999999999999999999999 6 67776664 4569999999 999999999
Q ss_pred CCCeEEEEEec
Q 007229 600 EDACIRVWRLA 610 (612)
Q Consensus 600 ~d~~i~~w~~~ 610 (612)
.|+.+++-|+.
T Consensus 513 sd~~vcvldlr 523 (524)
T KOG0273|consen 513 SDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEec
Confidence 99999998874
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.5e-41 Score=276.78 Aligned_cols=335 Identities=19% Similarity=0.260 Sum_probs=278.7
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
...+..|..|...|.+++.+|+.+ +++||+.|..-.+|++.++.....+.+|...|+++.|+.||.+||+|..+|.|+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 345678999999999999999777 7999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+..++.....+. ..-..+.-+.|+|.+..|+.|+.||.+.+|.+ .++..
T Consensus 133 ~~~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~i----p~~~~----------------------- 182 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI----PSQAL----------------------- 182 (399)
T ss_pred EEcccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEEC----CCcce-----------------------
Confidence 9999999988883 45678899999999999999999999999999 33322
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
.+.+.+|..++++-.|.+. ++.++++..||+|++|+..++++.....+..
T Consensus 183 -----------------------~kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e------ 232 (399)
T KOG0296|consen 183 -----------------------CKVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQAE------ 232 (399)
T ss_pred -----------------------eeEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEecccc------
Confidence 2456788899999989843 9999999999999999999886554332100
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
.....++
T Consensus 233 -------------------------------------------------------------------------~~~~~~~ 239 (399)
T KOG0296|consen 233 -------------------------------------------------------------------------GLELPCI 239 (399)
T ss_pred -------------------------------------------------------------------------cCcCCcc
Confidence 1134567
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccce------eeccccCceEEEE---EcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM------VLEKHRGAITVIQ---YSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~------~~~~~~~~i~~~~---~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
.++..+..++.|..++.+++.+..+++..... ....+...+.++. ++..-++.|+|+-||+|.|||+...+
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 77777777777777777777777666652111 1123444444544 45566789999999999999999988
Q ss_pred eeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEE
Q 007229 528 VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRV 606 (612)
Q Consensus 528 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~ 606 (612)
.+ ... .|..+|+.+.|-+ ..+|++++.||.|+.||.++ + +++..+.+|..+|..++.+ +.++++|+|.|++.++
T Consensus 320 ~R-~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 320 LR-HIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDART-G-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred hh-eec-cCCCceEEEEEcC-cchheeeccCceEEeeeccc-c-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 75 334 4899999999998 77999999999999999999 7 8999999999999999999 9999999999999999
Q ss_pred EEec
Q 007229 607 WRLA 610 (612)
Q Consensus 607 w~~~ 610 (612)
+++.
T Consensus 395 F~v~ 398 (399)
T KOG0296|consen 395 FEVP 398 (399)
T ss_pred EecC
Confidence 9875
No 31
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-38 Score=285.60 Aligned_cols=577 Identities=16% Similarity=0.254 Sum_probs=382.1
Q ss_pred CCCCCceeEEEEccCCC---EEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 15 STERGRGILISGNPKTD---TILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~---~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.+|..+|+|+.+-|+.+ ++++|+ |+.|.+|.++... .+..+.+|.. .++++...-........|+.+.+||.
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~--~~~cv~a~~~~~~~~~ad~~v~vw~~ 128 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK--ECVCVVARSSVMTCKAADGTVSVWDK 128 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce--eEEEEEeeeeEEEeeccCceEEEeec
Confidence 46889999999999998 777777 8999999998433 3444666554 45555544444444478999999999
Q ss_pred CCCce-eeeeeeecCC--CeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCC----ceeeeeccCCceEEEEEEcCCC-
Q 007229 89 HNGFV-LKNEFKVLSG--RIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSG----TTVGDFDGHSRRVLSCEFKPTR- 159 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~--~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~- 159 (612)
+..+. +...+....+ -..|+++.| .+.+|.+++.... .+...... +.+..+.||.+.|.+++|...+
T Consensus 129 ~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~----~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 129 QQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF----VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred CCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce----EEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 65551 2222222222 235667777 5566666665542 24444333 6788899999999999998755
Q ss_pred -CEEEEEeecCCeEEEEeCCCCe-------------------------ee------ecccccccceEEEEECCCCCeEEE
Q 007229 160 -PFRIATCGEDFLVNFYEGPPFK-------------------------FK------LSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 160 -~~~l~~~~~d~~i~~wd~~~~~-------------------------~~------~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
.++|++++.|..||+|.+..+. .. ..+.||++.|+++.|+|.+..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 4689999999999999743221 11 124589999999999999999999
Q ss_pred EEcCCcEEEEecCCCC--eeee--eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcc
Q 007229 208 VSSDRKGLIYDGKSGE--KIGE--FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~--~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 283 (612)
++.|.++.+|...+.. .+.. +....+.........|+|+++.+++-+..|..++|.. .....-... ....
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt----~d~~~w~~~--~~iS 358 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT----KDKTFWTQE--PVIS 358 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec----cCccceeec--cccc
Confidence 9999999999876542 2222 2112244566889999999999999999999999984 222111111 1111
Q ss_pred ccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCC---CceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 284 AVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDK---APLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 284 ~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
.....+..+.|. ++++++.+.|.+-++|-.-..+. .+...+-|...++++++.+. ...+++|..+..+|+|+..
T Consensus 359 GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCc
Confidence 233456677777 88999999999999987552222 22334458888999999853 6788999999999999764
Q ss_pred Cceeeee------------ceecccceEEEEeeccEEE-----EecC----------------------CC--eEEEEec
Q 007229 359 VGYSSKL------------EKKYDARIKCLAAVEEVIF-----TAGF----------------------DN--KVWRVPL 397 (612)
Q Consensus 359 ~~~~~~~------------~~~~~~~i~~~~~~~~~l~-----~~~~----------------------~~--~i~~~~~ 397 (612)
......+ .......|..+...++-++ ++.. |. ...+|+-
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 2111000 0001111111111111000 0000 00 1112221
Q ss_pred CCCCCCccceeccCCCcceeeecCCCCcEEEEEeec-----cEEEeecccc--eeeec-ccceEEEEEEccCCCeEEEEe
Q 007229 398 CEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES-----GVILLDSLKV--MSKID-LGFTVTACAIAPDGSEAIVGG 469 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~-~~~~i~~~~~s~~~~~l~~~~ 469 (612)
...-.. .- ..+.+++.+|++.-++...... .+.+|++..- .+.+. |.-.|+.++||||+++|++.+
T Consensus 518 v~KLYG--HG----yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 518 VHKLYG--HG----YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred hHHhcc--Cc----eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee
Confidence 111100 00 0234555666654443333322 3666664332 23333 888999999999999999999
Q ss_pred cCCeEEEEEccCcccc--cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc--ceeee-cccccccceeEEE
Q 007229 470 QNGKLHIYSISGNTLT--EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK--EVKLN-NMLFHTARINCLA 544 (612)
Q Consensus 470 ~dg~v~i~d~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~-~~~~~~~~i~~~~ 544 (612)
.|.++.+|........ .....+.|+.-|.+..|+|++.++||++.|.+|++|..... +.+.. ....+..+|++++
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 9999999998544321 12336789999999999999999999999999999998877 44323 3344889999999
Q ss_pred ecC-----CCcEEEEeecCcEEEEEEccCCC----------cceeeeecccccCeeeEEEecC-----------ceEEEc
Q 007229 545 WSP-----SSTMVATGSIDTCVIIYEIGKPA----------SSRITIKNAHLGGVYGVAFMDD-----------FNVVSS 598 (612)
Q Consensus 545 ~s~-----~~~~l~s~~~d~~i~iwd~~~~~----------~~~~~~~~~h~~~v~~~~~~~~-----------~~l~s~ 598 (612)
|.| .+..++.|-+.|.|.+|...... ...+....+|.+.|+.+.|.+- ..|++|
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~ 751 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVG 751 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeee
Confidence 987 22367889999999999976211 0112234567889999999821 137999
Q ss_pred cCCCeEEEEEec
Q 007229 599 GEDACIRVWRLA 610 (612)
Q Consensus 599 ~~d~~i~~w~~~ 610 (612)
++|.++|+++++
T Consensus 752 g~D~~vri~nv~ 763 (764)
T KOG1063|consen 752 GDDESVRIFNVD 763 (764)
T ss_pred cccceeEEeecc
Confidence 999999999975
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.7e-40 Score=259.66 Aligned_cols=286 Identities=19% Similarity=0.321 Sum_probs=238.5
Q ss_pred CCCCCceeEEEEccC-CCEEEEec-CCEEEEEeCCCC---ceeeEe-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 15 STERGRGILISGNPK-TDTILYCN-GRSVLIRYLDKP---LHVEFY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d-~~~l~~~~-~~~i~i~~~~~~---~~~~~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
+.|++++-.++|+|- |..||+++ ++.|+||+...+ .+...+ .+|+..|..++|+|.|++||+||.|.++.||.-
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 456789999999998 88999998 799999999853 333333 479999999999999999999999999999998
Q ss_pred CCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-----CceeeeeccCCceEEEEEEcCCCCEE
Q 007229 89 HNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-----GTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
..++. ....+.+|...|.+++|+++|.+||+++.+. .+|.|+. -++...++.|+..|..+.|+|... +
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK-----SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-l 164 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK-----SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-L 164 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC-----eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-e
Confidence 86654 5678999999999999999999999999998 5777772 357788999999999999999887 7
Q ss_pred EEEeecCCeEEEEeCC---CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 163 IATCGEDFLVNFYEGP---PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
|++++.|.+|++|+-. ...+..++.+|+..|.+++|+|.|..|++++.|++++||...+ .+ ...|..+++
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~--~~~~sr~~Y 237 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DL--SGMHSRALY 237 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Cc--chhcccceE
Confidence 9999999999999755 5678889999999999999999999999999999999998652 22 236788999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
.+.|. ...|++++.|+.|++|.. .....-..+. ..
T Consensus 238 ~v~W~--~~~IaS~ggD~~i~lf~~----s~~~d~p~~~---------------------------------------l~ 272 (312)
T KOG0645|consen 238 DVPWD--NGVIASGGGDDAIRLFKE----SDSPDEPSWN---------------------------------------LL 272 (312)
T ss_pred eeeec--ccceEeccCCCEEEEEEe----cCCCCCchHH---------------------------------------HH
Confidence 99998 446999999999999986 2110000000 11
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
...-..|...|+++.|.+...++|++++.||.+++|.+.
T Consensus 273 ~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 273 AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 123346888999999997668999999999999999764
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-40 Score=281.82 Aligned_cols=334 Identities=17% Similarity=0.317 Sum_probs=281.2
Q ss_pred eccCCCceEEEEECCCCC-EEEEeeCcCeEEEeecCCCc--e-----eeeee------eecCCCeEEEEECCCCCEEEEE
Q 007229 55 YGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGTHNGF--V-----LKNEF------KVLSGRIDDLQWSPDGLRIVAC 120 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~--~-----~~~~~------~~~~~~i~~~~~s~~~~~l~~~ 120 (612)
+..|+.+|.+.+|+|-.. +||+++.|-..++|++.... . ++..+ ......|++++|+.+|..||++
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 334999999999999665 99999999999999998511 0 11111 1123579999999999999999
Q ss_pred eCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEEC
Q 007229 121 GDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFS 199 (612)
Q Consensus 121 ~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 199 (612)
..++ .+..|+ .|..+.++..|.++|.++.|+.+|.| +++++.|+++.+||..++...+.+.-|+.+-..+.|-
T Consensus 254 ~~~G-----~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 254 SEDG-----EARIWNKDGNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred ecCc-----EEEEEecCchhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 9998 466666 68889999999999999999999996 9999999999999999999999999999987888997
Q ss_pred CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
.+. .+++.+.|+.|+|+.+....+..++. +|.++|.++.|.|.+.+|++++.|+++++|+. .....
T Consensus 328 ~~~-~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~----~~~~~------ 393 (524)
T KOG0273|consen 328 SND-EFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNPTGSLLASCSDDGTLKIWSM----GQSNS------ 393 (524)
T ss_pred cCc-eEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECCCCceEEEecCCCeeEeeec----CCCcc------
Confidence 665 58888999999999999999999883 89999999999999999999999999999997 33322
Q ss_pred cCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 280 STSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
...+.+|...|..+.|++.++
T Consensus 394 ----------------------------------------~~~l~~Hskei~t~~wsp~g~------------------- 414 (524)
T KOG0273|consen 394 ----------------------------------------VHDLQAHSKEIYTIKWSPTGP------------------- 414 (524)
T ss_pred ----------------------------------------hhhhhhhccceeeEeecCCCC-------------------
Confidence 244566777777777774110
Q ss_pred ceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee
Q 007229 360 GYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD 439 (612)
Q Consensus 360 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (612)
T Consensus 415 -------------------------------------------------------------------------------- 414 (524)
T KOG0273|consen 415 -------------------------------------------------------------------------------- 414 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeE
Q 007229 440 SLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518 (612)
Q Consensus 440 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 518 (612)
+..+| ++..+++++.|++|++||+..+.+ ...+..|..+|.+++|+|+|+++|+|+.||.|
T Consensus 415 ----------------v~~n~~~~~~l~sas~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 415 ----------------VTSNPNMNLMLASASFDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV 476 (524)
T ss_pred ----------------ccCCCcCCceEEEeecCCeEEEEEccCCce--eEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence 11122 355788899999999999999877 78899999999999999999999999999999
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
.+|+.++++.. +... ..+.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 477 ~iws~~~~~l~-~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKTGKLV-KSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred Eeccccchhee-Eeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999987 4444 45679999999999999999999999999875
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-40 Score=275.36 Aligned_cols=283 Identities=22% Similarity=0.351 Sum_probs=259.6
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.++..|+.+-|+|+-...++++ +.+|++||..+++..+.++||+..|..++|+..|++||+++.|-.+++||..+....
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC 185 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH
Confidence 4788999999999999999997 899999999999999999999999999999999999999999999999999986556
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
.+.+.+|...|.+++|-|.|.++++++.|. .|..|..+++.++.+|++|...|..++.+.||. ++++|+.|.++++
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~---tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~v 261 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDN---TIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRV 261 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeeccccc---ceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecCCCceEEE
Confidence 668889999999999999999999999998 578899999999999999999999999999998 7999999999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCC---------------CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPD---------------GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
|-+.++++...+++|+.+|.+++|.|. ++++.+++.|++|++||+.++.++.++ .+|...|.
T Consensus 262 W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL---~ghdnwVr 338 (406)
T KOG0295|consen 262 WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL---VGHDNWVR 338 (406)
T ss_pred EEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE---ecccceee
Confidence 999999999999999999999999873 258999999999999999999999999 49999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
.++|+|.|+||+++..|+++++||+ .+.++++.+.
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl----~~~~cmk~~~----------------------------------------- 373 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDL----KNLQCMKTLE----------------------------------------- 373 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEe----ccceeeeccC-----------------------------------------
Confidence 9999999999999999999999999 7777776554
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
.|..-++++.|... ..++++|+-|..+++|.
T Consensus 374 -----ah~hfvt~lDfh~~-~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 374 -----AHEHFVTSLDFHKT-APYVVTGSVDQTVKVWE 404 (406)
T ss_pred -----CCcceeEEEecCCC-CceEEeccccceeeeee
Confidence 46667788888721 55888999999999885
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-40 Score=274.91 Aligned_cols=304 Identities=22% Similarity=0.353 Sum_probs=264.6
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
...+.+.+|..+|+.+-|+|+-. +++++++|++|++||..++++...+++|...+..++|+..|++|++++.|=.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 45566788999999999999988 79999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC-CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 218 DGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 218 d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|.++ .+++... .+|...|.+++|-|.|.++++++.|.+|+.|++ .++-++.++.
T Consensus 178 d~~~~~~c~ks~---~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~----~tg~cv~t~~------------------ 232 (406)
T KOG0295|consen 178 DFDTFFRCIKSL---IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC----DTGYCVKTFP------------------ 232 (406)
T ss_pred eHHHHHHHHHHh---cCcccceeeEEEEecCCeeeecccccceeEEec----ccceeEEecc------------------
Confidence 9876 3344433 489999999999999999999999999999999 7777776554
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
+|...|..+... + +.++++++.|.++++|-..+.++......|..+|.|
T Consensus 233 ----------------------------~h~ewvr~v~v~~D--Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc 282 (406)
T KOG0295|consen 233 ----------------------------GHSEWVRMVRVNQD--GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC 282 (406)
T ss_pred ----------------------------CchHhEEEEEecCC--eeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence 566677777777 5 899999999999999999999888888889999999
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
+++.....+....+
T Consensus 283 i~wap~~~~~~i~~------------------------------------------------------------------ 296 (406)
T KOG0295|consen 283 IAWAPESSYPSISE------------------------------------------------------------------ 296 (406)
T ss_pred EEecccccCcchhh------------------------------------------------------------------
Confidence 88743221111000
Q ss_pred EEEc-cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccc
Q 007229 456 CAIA-PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNML 534 (612)
Q Consensus 456 ~~~s-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 534 (612)
..=+ ..++++++++.|++|++||+.++.+ ..++.+|.+.|..++|+|.|+||+++.+|+++++||++++++. +.+.
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ 373 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM-KTLE 373 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee-eccC
Confidence 0000 1457899999999999999999987 8999999999999999999999999999999999999999997 6677
Q ss_pred ccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 535 FHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 535 ~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
.|..-++++.|..+..++++|+-|.++++|..
T Consensus 374 ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 89999999999999999999999999999975
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=261.83 Aligned_cols=297 Identities=18% Similarity=0.323 Sum_probs=255.0
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
+..+.+|++.|..+.|+|+|.++|||+.|..|.+|++.....-.-.+++|++.|..+.|.+|+..+++++.|. .++.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk---~v~~ 116 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK---TVRG 116 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc---eEEE
Confidence 3346799999999999999999999999999999997766555557889999999999999999999999998 6788
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
|+..+|+.++.+++|...|.++.-+.-|..++.+++.|+++++||+++...++++. ...+++++.|..++..+++|+-|
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 88889999999999999999999777888899999999999999999998888774 45679999999999999999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
+.|++||++.+.....+ .+|..+|+.+..+|+|.++.+-+.|.++++||+..-....+++..+....
T Consensus 196 n~ikvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~---------- 262 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI---------- 262 (338)
T ss_pred CceeeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch----------
Confidence 99999999999999998 49999999999999999999999999999999822111111111111100
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
|.-
T Consensus 263 -----------------------------------------------------------------------------hnf 265 (338)
T KOG0265|consen 263 -----------------------------------------------------------------------------HNF 265 (338)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
..
T Consensus 266 ------------------------------------------------------------------------------ek 267 (338)
T KOG0265|consen 266 ------------------------------------------------------------------------------EK 267 (338)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 01
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
....++|+|+++.+..|+.|..+++||.....+ ...+++|.+.|++++|+|...+|.+++.|++|++=+
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~--lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI--LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccE--EEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 234578999999999999999999999988777 788999999999999999999999999999998743
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-41 Score=282.26 Aligned_cols=285 Identities=19% Similarity=0.330 Sum_probs=249.4
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
..+-.|..+.|.|+|+.|++|+ .|.+.+|+..+-.-...+..|...|+++.||++|.+++||+.+|.|++|+..-.. +
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V 172 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V 172 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h
Confidence 3455889999999999999999 6999999986544444567899999999999999999999999999999988664 3
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
+.....|...|++++|||+...++++++|+ .++||+....+....+.+|.-.|.+++|+|... ++++++.|..|++
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg---~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKl 248 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDG---TIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKL 248 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCC---eEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCCceeEe
Confidence 333344558999999999999999999999 578888778888888999999999999999988 7999999999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEE
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTV 253 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~ 253 (612)
||.++++++.++.+|...|..+.|+|++++|++++.|..++++|+++.+.+..+ ++|...+.++.|+| ...+|.++
T Consensus 249 WDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~---r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY---RGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred ecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh---hcchhhheeeccccccccceeec
Confidence 999999999999999999999999999999999999999999999988888888 48999999999999 66788899
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+.||.|..|.+ ...+++ ...-.+|...|+++
T Consensus 326 g~Dgsvvh~~v----~~~~p~---------------------------------------------~~i~~AHd~~iwsl 356 (464)
T KOG0284|consen 326 GSDGSVVHWVV----GLEEPL---------------------------------------------GEIPPAHDGEIWSL 356 (464)
T ss_pred cCCCceEEEec----cccccc---------------------------------------------cCCCcccccceeee
Confidence 99999999998 312211 12334699999999
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcC
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
+|++- +.+|++|+.|.++++|...
T Consensus 357 ~~hPl-Ghil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 357 AYHPL-GHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ecccc-ceeEeecCCCcceeeeccC
Confidence 99943 8999999999999999654
No 38
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=271.05 Aligned_cols=495 Identities=16% Similarity=0.173 Sum_probs=365.8
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-CCeEEEEECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-GRIDDLQWSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
+.--...|+++|||.+.+.||.+-.||.|.||++...-.+...+.++. ..|.+++|++. .+|.+.+.++ .+.-|+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg---~i~EwD 96 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSG---SITEWD 96 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCc---eEEEEe
Confidence 344567899999999999999999999999999999876666676655 47999999954 4666666666 345555
Q ss_pred ecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEcC
Q 007229 134 WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
..+++++..+....+.|++++.+|.+. .++.|+.||.+..++..+++.... +....+.|.+++|+|++..++.|+.|
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 559999999999999999999999998 699999999888999888876654 44556899999999999999999999
Q ss_pred CcEEEEecCCCCeeeeee-----ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 212 RKGLIYDGKSGEKIGEFS-----SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
|.|++||..++..+.... ..+....-|+++.|..++ .+++|...|+|++||. ..+.+++.
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~----~~gTLiqS---------- 240 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDS----IFGTLIQS---------- 240 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcc----cCcchhhh----------
Confidence 999999999998877321 111234457788888665 5888888999999998 66655544
Q ss_pred eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee--
Q 007229 287 DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK-- 364 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-- 364 (612)
...|...|.+++..+. ++.+++++.|+.+..+...+.....
T Consensus 241 ------------------------------------~~~h~adVl~Lav~~~-~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 241 ------------------------------------HSCHDADVLALAVADN-EDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred ------------------------------------hhhhhcceeEEEEcCC-CCeEEEccCCCceEEEEecCCccceee
Confidence 3457778888888732 6899999999999998887764421
Q ss_pred --eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 365 --LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 365 --~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
....|...+.+++.-+..+++++.|..+.+-........... .....+........-..++++.-....+.+|.-+.
T Consensus 284 ~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~-~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS 362 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHR-QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGS 362 (691)
T ss_pred eccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhh-ccccccccceeecCccceEEEEeccccccceeccC
Confidence 222389999999998889999999999988776653332111 22222222233333333556666666777776333
Q ss_pred c----------eee--ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee---eccccCceEEEEEcCCCc
Q 007229 443 V----------MSK--IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV---LEKHRGAITVIQYSPDVS 507 (612)
Q Consensus 443 ~----------~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~ 507 (612)
. +.. .+....|.+.++||+|++++.+.- ..+++|.++......... ..........+.|+-|+.
T Consensus 363 ~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~ 441 (691)
T KOG2048|consen 363 VILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKN 441 (691)
T ss_pred cccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCc
Confidence 2 111 224567999999999999999875 357888876532211111 222334678888999888
Q ss_pred EEEEEc-CCCeEEEEecCCcceee--ec-ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccC
Q 007229 508 MFASAD-GNREAIVWDRVSKEVKL--NN-MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGG 583 (612)
Q Consensus 508 ~l~~~~-~d~~i~iwd~~~~~~~~--~~-~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~ 583 (612)
.++.++ .+..+.+.++++..... .. ..+....|..+..||+|++||+.+.+|.|.+|++++.. .......-...
T Consensus 442 k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~--~~~l~~rln~~ 519 (691)
T KOG2048|consen 442 KLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE--SHLLKVRLNID 519 (691)
T ss_pred eEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce--eecchhccCcc
Confidence 888777 67788888887655421 11 12345679999999999999999999999999999832 22222234478
Q ss_pred eeeEEEe--cCceEEEccCCCeEEEEEec
Q 007229 584 VYGVAFM--DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 584 v~~~~~~--~~~~l~s~~~d~~i~~w~~~ 610 (612)
|+.++|+ +...|+.+..|+.+.-||++
T Consensus 520 vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred eeeeeccccccCcEEEEecCCeEEEEecc
Confidence 9999999 55679999999999999984
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.8e-40 Score=300.37 Aligned_cols=240 Identities=23% Similarity=0.321 Sum_probs=223.2
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCC-------------------------------ceeeEeccCCCceEEE
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKP-------------------------------LHVEFYGEHGYPVTVA 65 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~-------------------------------~~~~~~~~h~~~v~~~ 65 (612)
...++|..||+|++.||.|. +..|++|.+... ...+.+.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 34789999999999999987 899999998731 1234477999999999
Q ss_pred EECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc
Q 007229 66 RYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG 145 (612)
Q Consensus 66 ~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 145 (612)
.|+|+.++|+++|.|++||+|.+.+..++. ..++|..+|..+.|+|-|-|+|+++.|+. -++|.-+...+++.+.+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V-~y~GH~~PVwdV~F~P~GyYFatas~D~t---ArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLV-IYKGHLAPVWDVQFAPRGYYFATASHDQT---ARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEE-EecCCCcceeeEEecCCceEEEecCCCce---eeeeecccCCchhhhcc
Confidence 999999999999999999999999998554 78899999999999999999999999984 48888889999999999
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
|...|.|+.|+|+..| +++||.|.+||+||+.+|..++.+.||.++|.+++|||+|++|++|+.||.|.+||+.+++.+
T Consensus 534 hlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred cccccceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 9999999999999996 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..+ .+|.+.|.++.|+.+|..|++++.|.+|++||+.
T Consensus 613 ~~l---~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 613 KQL---KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred hhh---hcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 988 4899999999999999999999999999999993
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=268.17 Aligned_cols=298 Identities=19% Similarity=0.315 Sum_probs=261.2
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
..+.+.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+++ ++..+.+|...+..+++|+-..||.+++.++ .+.
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~rHpYlFs~gedk---~VK 218 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKRHPYLFSAGEDK---QVK 218 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeecccCceEEEecCCC---eeE
Confidence 345688999999999999999999999999999999999998 8889999999999999999999999999998 678
Q ss_pred EEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 131 AFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.|++...+.++.+.||-..|.+++.+|.-+ +|++|+.|.++++||+++...+..+.||..+|..+.+.|-...+++|+.
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 899989999999999999999999999988 7999999999999999999999999999999999999998888999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
|++|++||+..|+....+ ..|...+.+++.+|....+++++.| .++-|++ ..+..+.
T Consensus 298 D~tvrlWDl~agkt~~tl---t~hkksvral~lhP~e~~fASas~d-nik~w~~----p~g~f~~--------------- 354 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITL---THHKKSVRALCLHPKENLFASASPD-NIKQWKL----PEGEFLQ--------------- 354 (460)
T ss_pred CceEEEeeeccCceeEee---ecccceeeEEecCCchhhhhccCCc-cceeccC----Cccchhh---------------
Confidence 999999999999998888 3889999999999999999999887 6899998 5444433
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
.+.+|..-+.+++... ...+++|+.+|.+.+||.+++...+....
T Consensus 355 -------------------------------nlsgh~~iintl~~ns--D~v~~~G~dng~~~fwdwksg~nyQ~~~t-- 399 (460)
T KOG0285|consen 355 -------------------------------NLSGHNAIINTLSVNS--DGVLVSGGDNGSIMFWDWKSGHNYQRGQT-- 399 (460)
T ss_pred -------------------------------ccccccceeeeeeecc--CceEEEcCCceEEEEEecCcCcccccccc--
Confidence 3566888888888886 78999999999999999988765443210
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
....-.+...
T Consensus 400 ----------------------------------------------------------------------~vqpGSl~sE 409 (460)
T KOG0285|consen 400 ----------------------------------------------------------------------IVQPGSLESE 409 (460)
T ss_pred ----------------------------------------------------------------------cccCCccccc
Confidence 0000112233
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccC
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISG 481 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 481 (612)
..|.+.+|...|..|++|..|.+|++|.-+.
T Consensus 410 agI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 410 AGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cceeEEeecccCceEEeccCCcceEEEeccc
Confidence 4689999999999999999999999998654
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.1e-38 Score=249.05 Aligned_cols=282 Identities=21% Similarity=0.293 Sum_probs=234.7
Q ss_pred eeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce--ee-eeeeecCCCeEEEEECCCCCEEEEEeCCCCe
Q 007229 51 HVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV--LK-NEFKVLSGRIDDLQWSPDGLRIVACGDGKGK 126 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~--~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 126 (612)
.++.+.+|.++|..++|+|- |..||+++.|+.|+||+...+.. .+ ..-.+|+..|++++|+|.|++|++++.+.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~-- 83 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA-- 83 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc--
Confidence 45678899999999999998 99999999999999999995332 22 22247999999999999999999999998
Q ss_pred eeEEEEEecC----CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC---CCeeeecccccccceEEEEEC
Q 007229 127 SFVRAFMWDS----GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP---PFKFKLSHREHSNFVNCIRFS 199 (612)
Q Consensus 127 ~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s 199 (612)
.+.+|.. -+++..+.||...|.+++|+++|+| ||+|++|+.|-+|.+. ..++...+++|...|..+.|+
T Consensus 84 ---t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 84 ---TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ---eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 3555553 3789999999999999999999995 9999999999999876 456677799999999999999
Q ss_pred CCCCeEEEEEcCCcEEEEecCCC---CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEee
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSG---EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 276 (612)
|...+|++++.|++|++|+-..+ ++.+++ .+|...|.+++|++.|..|++++.|+++++|.. ..
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl---~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~----~~------ 226 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL---DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL----YT------ 226 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEe---cCccceEEEEEecCCCceEEEecCCcceEeeee----cc------
Confidence 99999999999999999987633 345555 589999999999999999999999999999996 10
Q ss_pred eeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
.....|..++..+.+. ...|++++.|+.|+++.
T Consensus 227 --------------------------------------------~~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 227 --------------------------------------------DLSGMHSRALYDVPWD---NGVIASGGGDDAIRLFK 259 (312)
T ss_pred --------------------------------------------CcchhcccceEeeeec---ccceEeccCCCEEEEEE
Confidence 0012266778888887 57899999999999997
Q ss_pred cCCceee-------eeceecccceEEEEee---ccEEEEecCCCeEEEEecC
Q 007229 357 RGVGYSS-------KLEKKYDARIKCLAAV---EEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 357 ~~~~~~~-------~~~~~~~~~i~~~~~~---~~~l~~~~~~~~i~~~~~~ 398 (612)
....... .....|...|+++.++ .++|++++.||.+++|.+.
T Consensus 260 ~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6642111 1223488899999993 5799999999999999864
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-37 Score=282.44 Aligned_cols=474 Identities=16% Similarity=0.244 Sum_probs=344.9
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
++.-+.+|..++|+|...+++++-..|.|++||..-+. +...+..|.++|..++|+|.+..++++|+|. .|++|++
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-li~rFdeHdGpVRgv~FH~~qplFVSGGDDy---kIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDY---KIKVWNY 80 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-HHhhhhccCCccceeeecCCCCeEEecCCcc---EEEEEec
Confidence 55567889999999999999999999999999999888 6678999999999999999999999999998 6899999
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
++.+++.++.||.+.|..+.|++.-++ ++++|.|.+|+||+..+++++..+.||...|.|..|+|...++++++-|.+|
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 999999999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCe---------------------------eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecC
Q 007229 215 LIYDGKSGEK---------------------------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267 (612)
Q Consensus 215 ~vwd~~~~~~---------------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~ 267 (612)
+|||+..-+. +.. ...++|...|.-++|+|.-..+++|+.|..|++|.+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK-~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm--- 235 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK-HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM--- 235 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee-eeecccccccceEEecCCcceEEecCCcceeeEEEe---
Confidence 9999853110 001 124589999999999999999999999999999998
Q ss_pred CCCCeeEeeeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
... +.+.........+.+.++.+. .+.+++.++|+.|++||+.. ...++.++...+..+.++.++ .-.++.
T Consensus 236 -net---KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrrendRFW~laahP--~lNLfA 308 (1202)
T KOG0292|consen 236 -NET---KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRRENDRFWILAAHP--ELNLFA 308 (1202)
T ss_pred -ccc---cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc-ccceeeeeccCCeEEEEEecC--Ccceee
Confidence 322 223333333444566666666 58899999999999999665 445667777778888888886 455566
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccC----CCcceeeecC
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG----SQPLDLSLAL 421 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 421 (612)
++.|+-+.+|.++... .+.+.+++.|+-.- |..|+.+|+.+.+......+... .++.+++++|
T Consensus 309 AgHDsGm~VFkleREr------------pa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNp 375 (1202)
T KOG0292|consen 309 AGHDSGMIVFKLERER------------PAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNP 375 (1202)
T ss_pred eecCCceEEEEEcccC------------ceEEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeecc
Confidence 6677777777665332 23344455555554 88999999998665444444433 4677888999
Q ss_pred CCCcEEEEEe-eccEEE-ee---cccce---eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc
Q 007229 422 SSPELALVST-ESGVIL-LD---SLKVM---SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH 493 (612)
Q Consensus 422 ~~~~~~~~~~-~~~~~~-~~---~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 493 (612)
....+++... +++... +. ..... ..........++ |-..+++.+.--.+..+.+-++.+... +.+...
T Consensus 376 ae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vt---kkl~~~ 451 (1202)
T KOG0292|consen 376 AENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVT---KKLLLP 451 (1202)
T ss_pred ccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceE-EEEecceEEEEecCcceEEecccchhh---hcccCc
Confidence 8877666643 223221 11 10000 000111112222 222222333333344555555554332 222211
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.....|-+.-.|.+|+.. ...|.++|++..+..... ....+..+.||+|..++|--+. .+|.|.+.+-
T Consensus 452 -~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si---~~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL 519 (1202)
T KOG0292|consen 452 -ESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSI---KVSKVKYVVWSNDMSRVALLSK-HTITIADKKL 519 (1202)
T ss_pred -ccccceeeccCccEEEEc--CCeEEEEEeecceEEEEE---ecCceeEEEEcCccchhhhccc-ceEEEEecch
Confidence 234556666677666654 347999999888776332 3567899999999988776653 4577777553
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-39 Score=295.46 Aligned_cols=282 Identities=26% Similarity=0.419 Sum_probs=233.0
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
.++..-...++|..||+|+++||.|-.|..|++|.+...+ ++ .++. ...+. .+=+.+.+- ...+.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~-~lk~-~~~l~---------~~d~~sad~---~~~~~ 436 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LK-KLKD-ASDLS---------NIDTESADV---DVDML 436 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hc-cccc-hhhhc---------cccccccch---hhhhc
Confidence 3344456789999999999999999999999999998754 22 1111 11110 010111111 01234
Q ss_pred EecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC
Q 007229 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR 212 (612)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 212 (612)
+-+.+....++.+|.++|..+.|+|+.++ |++|++|+++|+|.+.+..++..++||..||..+.|+|.|-|+|+++.|+
T Consensus 437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred cccCCceeEEeecCCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCc
Confidence 44456667779999999999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
+.++|......+++.+ .+|.+.|.|+.|+|+..|+++|+.|.++++||+ .++..++.|.
T Consensus 516 tArLWs~d~~~PlRif---aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv----~~G~~VRiF~-------------- 574 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIF---AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV----STGNSVRIFT-------------- 574 (707)
T ss_pred eeeeeecccCCchhhh---cccccccceEEECCcccccccCCCCceEEEEEc----CCCcEEEEec--------------
Confidence 9999999998888888 499999999999999999999999999999999 4443332221
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDAR 372 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 372 (612)
|
T Consensus 575 --------------------------------G----------------------------------------------- 575 (707)
T KOG0263|consen 575 --------------------------------G----------------------------------------------- 575 (707)
T ss_pred --------------------------------C-----------------------------------------------
Confidence 1
Q ss_pred eEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccce
Q 007229 373 IKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT 452 (612)
Q Consensus 373 i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (612)
|..+
T Consensus 576 ----------------------------------------------------------------------------H~~~ 579 (707)
T KOG0263|consen 576 ----------------------------------------------------------------------------HKGP 579 (707)
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 2235
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
|++++|||+|++|++|++||.|.+||+.++++ ...+.+|++.|.++.||.||..||+++.|.+|++||+.....
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 88899999999999999999999999999988 788999999999999999999999999999999999865443
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.9e-40 Score=274.63 Aligned_cols=285 Identities=22% Similarity=0.395 Sum_probs=247.2
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
-+..|..+.|.|+|+.|++|+..|.+.+|+..+-. ....+..|...|+++.|+++|.+++++..++ +|++|..+-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG---~iKyWqpnm- 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGTWMISGDKGG---MIKYWQPNM- 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCCEEEEcCCCc---eEEecccch-
Confidence 45689999999999999999999999999986554 3446778999999999999999999998887 445444443
Q ss_pred ceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 138 TTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 138 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
..+..+.+| ...|++++|+|++. .+++|+.||+|+|||....+....+.+|.-.|.+++|+|...++++++.|..|++
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 334445554 59999999999887 6999999999999999999888889999999999999999999999999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
||.+++.++.++ ..|...|..+.|+|++++|++++.|..++++|+ .+.+
T Consensus 249 WDprSg~cl~tl---h~HKntVl~~~f~~n~N~Llt~skD~~~kv~Di----R~mk------------------------ 297 (464)
T KOG0284|consen 249 WDPRSGSCLATL---HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDI----RTMK------------------------ 297 (464)
T ss_pred ecCCCcchhhhh---hhccceEEEEEEcCCCCeeEEccCCceEEEEeh----hHhH------------------------
Confidence 999999999998 499999999999999999999999999999999 3222
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee-eeceecccceEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS-KLEKKYDARIKC 375 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~i~~ 375 (612)
.+..+++|...++++.|++....+|.+|+.||.|..|.+...+.. .....|...|.+
T Consensus 298 ----------------------El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 298 ----------------------ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS 355 (464)
T ss_pred ----------------------HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence 235667899999999999777999999999999999999844444 445559999999
Q ss_pred EEe--eccEEEEecCCCeEEEEecCCCC
Q 007229 376 LAA--VEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 376 ~~~--~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
+++ -+..|++++.|.++++|.-....
T Consensus 356 l~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 356 LAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eeccccceeEeecCCCcceeeeccCCCC
Confidence 999 68899999999999999865443
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-39 Score=269.20 Aligned_cols=293 Identities=21% Similarity=0.297 Sum_probs=248.2
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
..+.+..|.+.|.-+.||++|+|||+++.|.+..+|++..... +.+++.+|..+|..+.||||.++|++|+.+. .
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e---~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE---V 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH---h
Confidence 3456889999999999999999999999999999999875543 6778999999999999999999999999988 3
Q ss_pred EEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEE
Q 007229 129 VRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLI 206 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 206 (612)
+.+|+.++|...+.++ +|...+.+++|.|||. .+++|+.|+++..||+.... ....++- ...|.+++.++||++++
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVL 370 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEE
Confidence 5666666888887775 3578999999999998 59999999999999987543 3333332 25699999999999999
Q ss_pred EEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 207 SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
+.+.|..|++++.++......+ ....+|++++.+.|++++++.-.+..+++||+ +....++.+.++... .
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~li----se~~~its~~iS~d~k~~LvnL~~qei~LWDl----~e~~lv~kY~Ghkq~--~ 440 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLI----SEEQPITSFSISKDGKLALVNLQDQEIHLWDL----EENKLVRKYFGHKQG--H 440 (519)
T ss_pred EEecccceeeechhhhhhhccc----cccCceeEEEEcCCCcEEEEEcccCeeEEeec----chhhHHHHhhccccc--c
Confidence 9999999999999888777666 56789999999999999999999999999999 777777777665422 2
Q ss_pred eeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 287 DMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 287 ~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
-.+.+|.-. ...+++|++|+.|++|+ +..++++..+.||...|++++|++.+..++++++.||+|++|-...
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWh-r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWH-RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEE-ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 233333333 57899999999999999 6667889999999999999999988899999999999999997653
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=255.71 Aligned_cols=487 Identities=14% Similarity=0.132 Sum_probs=352.6
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCC-ceeeEeccC-CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKP-LHVEFYGEH-GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~-~~~~~~~~h-~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
..|.++|||.+.+.||.+. +|.|.||++..+ -+...+.++ ...|.+++|++ +..|.+.+.+|.|.-||+.+.++ .
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~-~ 103 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ-K 103 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce-e
Confidence 4788999999999999997 899999999865 344556666 56799999995 45688888999999999999984 4
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCcee--eeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTV--GDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
..+....+.|.+++.+|.+..++.+++++ .+++.+ .++.. ..|....++|.+++|+|++. .+++|+.||.
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddG-----vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDG-----VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGV 177 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCc-----eEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCce
Confidence 57777889999999999999999998888 244444 33332 34556679999999999997 5999999999
Q ss_pred EEEEeCCCCeeeec-------cc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 172 VNFYEGPPFKFKLS-------HR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 172 i~~wd~~~~~~~~~-------~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
|++||...+..... +. +...-|.++.|-.++ .|++|...|+|.+||...+..++.+. .|.+.|.+++.
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav 253 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAV 253 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEE
Confidence 99999999887762 11 133457888888766 69999999999999999999999883 89999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
.++++++++++.|+.+..|.. .+...- +. .....
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~----~~~~~~--wv----------------------------------------~~~~r 287 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSL----TTNKSE--WV----------------------------------------INSRR 287 (691)
T ss_pred cCCCCeEEEccCCCceEEEEe----cCCccc--ee----------------------------------------eeccc
Confidence 999999999999999988887 222110 00 01223
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
..|...+.+++..+ ..+++|+.|..+.+-.....+...-... +...-.......++++.--.+..+.+|.+.+..
T Consensus 288 ~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~ 364 (691)
T KOG2048|consen 288 DLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVI 364 (691)
T ss_pred cCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcc
Confidence 45888899998884 5999999999998876554222111110 111111111133444444455566666665542
Q ss_pred CC----c----cceeccCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeeec------ccceEEEEEEccCCCeE
Q 007229 402 CG----D----AEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKID------LGFTVTACAIAPDGSEA 465 (612)
Q Consensus 402 ~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~i~~~~~s~~~~~l 465 (612)
.. . ...........+.+++|++. .++.+.-....++. ....+.... ..-....+.|+-|+..+
T Consensus 365 ~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~-~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~ 443 (691)
T KOG2048|consen 365 LQGEYNYIHLLKLFTKEKENISCAAISPDGN-LIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKL 443 (691)
T ss_pred cccccChhhheeeecCCccceeeeccCCCCC-EEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceE
Confidence 11 1 11223344567788899984 45555544444443 111221111 22356778888888888
Q ss_pred EEEe-cCCeEEEEEccCcccccceeec--cccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 466 IVGG-QNGKLHIYSISGNTLTEEMVLE--KHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 466 ~~~~-~dg~v~i~d~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
+..+ ....+.++++.+........+. +....|..+..||+|++||+.+.+|.|.+|++++.+.... ...-...+++
T Consensus 444 ~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l-~~rln~~vTa 522 (691)
T KOG2048|consen 444 FLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLL-KVRLNIDVTA 522 (691)
T ss_pred EEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecc-hhccCcceee
Confidence 8777 6778888888776543232222 3456799999999999999999999999999999887532 2234578999
Q ss_pred EEecC-CCcEEEEeecCcEEEEEEccC
Q 007229 543 LAWSP-SSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 543 ~~~s~-~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++|+| +.+.|+.+..|+++.=||++.
T Consensus 523 ~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred eeccccccCcEEEEecCCeEEEEecch
Confidence 99995 667899999999999999954
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.9e-38 Score=251.74 Aligned_cols=289 Identities=23% Similarity=0.350 Sum_probs=244.7
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC-CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG-EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
+..+.+|.+.|..+.|+|+|.++++|+.|..|.+|+.... +....+ ++|.+.|..+.|.+|++.+++++.|.+++.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l---kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL---KGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee---ccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 3457799999999999999999999999999999995433 233333 599999999999999999999999999999
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
||+ ++++..+.+ ++|..-++.+.....+..
T Consensus 117 wD~----~tG~~~rk~----------------------------------------------k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 117 WDA----ETGKRIRKH----------------------------------------------KGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred Eec----ccceeeehh----------------------------------------------ccccceeeecCccccCCe
Confidence 999 777776544 457777777776655578
Q ss_pred EEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecC
Q 007229 342 TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421 (612)
Q Consensus 342 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (612)
++.+++.|+++++||++.......
T Consensus 147 lv~SgsdD~t~kl~D~R~k~~~~t-------------------------------------------------------- 170 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKEAIKT-------------------------------------------------------- 170 (338)
T ss_pred EEEecCCCceEEEEeecccchhhc--------------------------------------------------------
Confidence 888999999999999987654433
Q ss_pred CCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEE
Q 007229 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQ 501 (612)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~ 501 (612)
++.+.+++++.|..++..+.+|+-|+.|++||++.+.. ...+.+|..+|+.+.
T Consensus 171 -------------------------~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~ls 223 (338)
T KOG0265|consen 171 -------------------------FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLS 223 (338)
T ss_pred -------------------------cccceeEEEEEecccccceeeccccCceeeeccccCcc--eEEeecccCceeeEE
Confidence 22346799999999999999999999999999998877 789999999999999
Q ss_pred EcCCCcEEEEEcCCCeEEEEecCCcc---eeeeccccccc----ceeEEEecCCCcEEEEeecCcEEEEEEccCCCccee
Q 007229 502 YSPDVSMFASADGNREAIVWDRVSKE---VKLNNMLFHTA----RINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRI 574 (612)
Q Consensus 502 ~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~----~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 574 (612)
.+|+|.++.+-+.|.++++||++... .....+.+|.. ....++|+|+++.+..|+.|+.+++||... . ..+
T Consensus 224 ls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~-r-~~l 301 (338)
T KOG0265|consen 224 LSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-R-RIL 301 (338)
T ss_pred eccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc-c-cEE
Confidence 99999999999999999999986533 22345555432 345689999999999999999999999987 5 788
Q ss_pred eeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 575 TIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 575 ~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
..+.+|.+.|..++|. ....|.+++.|.+|.+=++
T Consensus 302 yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 302 YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 8999999999999999 7888999999999987443
No 48
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=8.3e-35 Score=251.10 Aligned_cols=487 Identities=12% Similarity=0.110 Sum_probs=364.0
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CC--------EEEEEeCCCCceeeEeccCCCceEEEEECC--CCCEEEEe--eCcC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GR--------SVLIRYLDKPLHVEFYGEHGYPVTVARYSP--NGEWIASA--DVSG 81 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~--------~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~las~--~~d~ 81 (612)
..|...|.|++.+||--.+++|- .+ .++|||..+-..+..+..-...|+|++||+ .|.+|+.. +.+.
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h 180 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPH 180 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcc
Confidence 35678999999999999998775 22 799999998888888888889999999998 45666665 4566
Q ss_pred eEEEeecCCCceeeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCceee---eeccCC-ceEEEEEEc
Q 007229 82 SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGTTVG---DFDGHS-RRVLSCEFK 156 (612)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~---~~~~~~-~~v~~~~~~ 156 (612)
.+.|||.+.+. .....+..+..|....|.|.+. .++++|... +..|.+..+.... .|+++. ..|.|++|.
T Consensus 181 ~lSVWdWqk~~-~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H----~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 181 MLSVWDWQKKA-KLGPVKTSNEVVFLATFHPTDPNLIITCGKGH----LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL 255 (626)
T ss_pred ccchhhchhhh-ccCcceeccceEEEEEeccCCCcEEEEeCCce----EEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence 79999999887 3446667778899999999665 555666554 5566666554433 344433 689999999
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
++|+ ++||..+|.|.+|+..+.+..+....|.+.|.+++...+|. |++|+.|+.|..|| ..-+.++....+ ...+
T Consensus 256 engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elP-e~~G 330 (626)
T KOG2106|consen 256 ENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELP-EQFG 330 (626)
T ss_pred CCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCc-hhcC
Confidence 9997 99999999999999988888877779999999999999997 55699999999999 555555554333 4556
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
+|..++=...+ |++|...+.|..=.+ +++-.+..+-... ...-.+...+.+++++++.++.+++|+
T Consensus 331 ~iRtv~e~~~d--i~vGTtrN~iL~Gt~----~~~f~~~v~gh~d----elwgla~hps~~q~~T~gqdk~v~lW~---- 396 (626)
T KOG2106|consen 331 PIRTVAEGKGD--ILVGTTRNFILQGTL----ENGFTLTVQGHGD----ELWGLATHPSKNQLLTCGQDKHVRLWN---- 396 (626)
T ss_pred CeeEEecCCCc--EEEeeccceEEEeee----cCCceEEEEeccc----ceeeEEcCCChhheeeccCcceEEEcc----
Confidence 77777654323 677766666655555 3333322222111 223334445588999999999999999
Q ss_pred CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEE
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWR 394 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~ 394 (612)
...+.--..-..+..++.|.+ ...++.|+..|...+.|.++...+..... +.++.++.+ ++.+++.++.|+.|++
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhp--sg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHP--SGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred CCceeEEEEecCceeEeeccC--cceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 222222233456778888886 34999999999999999999887777764 888999988 8999999999999999
Q ss_pred EecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeE
Q 007229 395 VPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKL 474 (612)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 474 (612)
|.+...... ....... +..+|+.+.||+|++++.+-+-|-.|
T Consensus 474 y~Vs~~g~~-------------------------------------y~r~~k~-~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 474 YRVSANGRK-------------------------------------YSRVGKC-SGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred EEECCCCcE-------------------------------------EEEeeee-cCceeEEeeecCCCceEEeccCceEE
Confidence 988765532 0111111 23679999999999999999999999
Q ss_pred EEEEccCcccc-cc---------------eeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc--eeeeccccc
Q 007229 475 HIYSISGNTLT-EE---------------MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE--VKLNNMLFH 536 (612)
Q Consensus 475 ~i~d~~~~~~~-~~---------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~ 536 (612)
..|....-+.. .. .....+...|..++-+.+.+++|+|.+.|+|++|...-.+ .....+.+|
T Consensus 516 LyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh 595 (626)
T KOG2106|consen 516 LYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH 595 (626)
T ss_pred EEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc
Confidence 99944322110 00 0112355667778888899999999999999999865433 334557889
Q ss_pred ccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 537 TARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 537 ~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
.+.|++++|..+..+|.+.+.|..|..|++
T Consensus 596 s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 596 SSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999999998888888889999999986
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-38 Score=265.67 Aligned_cols=292 Identities=23% Similarity=0.369 Sum_probs=239.6
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC---CeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP---FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
..+.+..|.+.|.-+.||++|+| ||+++.|.+..+|++.. .+..+++.+|..+|..+.||||.++|++++.|..+.
T Consensus 216 t~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 44567889999999999999996 99999999999997543 455788999999999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+||..+|.....+. .++...+.+.+|.|||..+++|+.|+++..||+ .++.+..++..
T Consensus 295 lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-----Dgn~~~~W~gv--------------- 352 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-----DGNILGNWEGV--------------- 352 (519)
T ss_pred eccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecC-----Ccchhhccccc---------------
Confidence 99999999998883 346689999999999999999999999999998 34443333221
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
....|.+++..+ +++.+++.+.|..|++++..+......
T Consensus 353 ------------------------------r~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~l---------- 391 (519)
T KOG0293|consen 353 ------------------------------RDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGL---------- 391 (519)
T ss_pred ------------------------------ccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcc----------
Confidence 113466666662 277888878888888887665432211
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
+....+|++
T Consensus 392 -----------------------------------------------------------------------ise~~~its 400 (519)
T KOG0293|consen 392 -----------------------------------------------------------------------ISEEQPITS 400 (519)
T ss_pred -----------------------------------------------------------------------ccccCceeE
Confidence 112347999
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCc--eEEEEEcC-CCcEEEEEcCCCeEEEEecCCcceeeec
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA--ITVIQYSP-DVSMFASADGNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~--i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 532 (612)
..+|.|++++++.-.+..+++||++...+ .....+|... +-.-+|.- +..++|+|++|+.|+||+..+++++ ..
T Consensus 401 ~~iS~d~k~~LvnL~~qei~LWDl~e~~l--v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll-~~ 477 (519)
T KOG0293|consen 401 FSISKDGKLALVNLQDQEIHLWDLEENKL--VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL-AV 477 (519)
T ss_pred EEEcCCCcEEEEEcccCeeEEeecchhhH--HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee-Ee
Confidence 99999999999999999999999997766 6677777654 34445654 5689999999999999999999998 77
Q ss_pred ccccccceeEEEecCC-CcEEEEeecCcEEEEEEccC
Q 007229 533 MLFHTARINCLAWSPS-STMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~-~~~l~s~~~d~~i~iwd~~~ 568 (612)
+.||...|++++|+|. -.++|+|++||+||||-...
T Consensus 478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999994 56899999999999998765
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.7e-38 Score=257.29 Aligned_cols=286 Identities=19% Similarity=0.211 Sum_probs=257.6
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
..|.+.|.|+++.|-.+++++++ |++|.|||+.+|++..++.||-..|..+++|+-..||.+++.|+.|+.||++..+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk- 226 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK- 226 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh-
Confidence 46789999999999999999999 8999999999999999999999999999999999999999999999999999998
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
+.+...+|-..|.+++..|.-..|++++.|. .+++|+..+...+..+.||..+|..+.+.|-++ .+++|+.|++|+
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDs---t~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvr 302 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDS---TIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVR 302 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcc---eEEEeeecccceEEEecCCCCcceeEEeecCCC-ceEEecCCceEE
Confidence 6668999999999999999999999999998 679999999999999999999999999999888 599999999999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
+||+..++...++..|...|.+++.+|....+|+++.|. |+-|++..|..+..+ .+|..-|.+++...|+ ++++|
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl---sgh~~iintl~~nsD~-v~~~G 377 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL---SGHNAIINTLSVNSDG-VLVSG 377 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc---ccccceeeeeeeccCc-eEEEc
Confidence 999999999999999999999999999999999988765 999999999999887 4899999999999877 68889
Q ss_pred eCCCcEEEEEeecCCCCCeeEeee---eccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcC
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTF---ASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~ 314 (612)
+.+|.+.+||. +++...+.. ..+.+-..+..+++.+|+ +.+++++..+.+|++|.-.
T Consensus 378 ~dng~~~fwdw----ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 378 GDNGSIMFWDW----KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CCceEEEEEec----CcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999999999 665544443 333333445566666666 7899999999999999843
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-38 Score=273.33 Aligned_cols=294 Identities=20% Similarity=0.328 Sum_probs=250.1
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
.+.+..+.+|+..|+++.|.|....+|++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+++++.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 4567788999999999999995555899999999999999876 899999999999999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCC-CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG-KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
+||+++|+++..+ .....+.++.|.|++ +.+++|+.|+.|+.||+ .+++.++
T Consensus 284 lwDtETG~~~~~f----~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi----Rs~kvvq------------------- 336 (503)
T KOG0282|consen 284 LWDTETGQVLSRF----HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI----RSGKVVQ------------------- 336 (503)
T ss_pred eeccccceEEEEE----ecCCCceeeecCCCCCcEEEEecCCCcEEEEec----cchHHHH-------------------
Confidence 9999999999999 667789999999988 88999999999999999 6666554
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
.+..|.+.|..+.|.+. +..+++.+.|+.+++|+.+.+........
T Consensus 337 ---------------------------eYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~i~~------ 382 (503)
T KOG0282|consen 337 ---------------------------EYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKNIAD------ 382 (503)
T ss_pred ---------------------------HHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchhhcc------
Confidence 34457888999999932 88999999999999999876654433210
Q ss_pred EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEE
Q 007229 375 CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVT 454 (612)
Q Consensus 375 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 454 (612)
.......
T Consensus 383 -------------------------------------------------------------------------~~~hsmP 389 (503)
T KOG0282|consen 383 -------------------------------------------------------------------------PEMHTMP 389 (503)
T ss_pred -------------------------------------------------------------------------hhhccCc
Confidence 0112356
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEccCc-ccccceeeccccC--ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 455 ACAIAPDGSEAIVGGQNGKLHIYSISGN-TLTEEMVLEKHRG--AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 455 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
++..+|++++++.-+.|+.|.+|.+... ++.....+++|.. --..+.|||||++|++|+.||.+.+||.++.+.+ .
T Consensus 390 ~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~-~ 468 (503)
T KOG0282|consen 390 CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV-S 468 (503)
T ss_pred ceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh-h
Confidence 7899999999999999999999987532 2223456777763 4667899999999999999999999999999887 6
Q ss_pred cccccccceeEEEecCCC-cEEEEeecCcEEEEEE
Q 007229 532 NMLFHTARINCLAWSPSS-TMVATGSIDTCVIIYE 565 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~-~~l~s~~~d~~i~iwd 565 (612)
.+.+|..++..+.|+|.. ..+|+++.||.|++||
T Consensus 469 ~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 788899999999999954 5799999999999996
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-37 Score=237.01 Aligned_cols=288 Identities=17% Similarity=0.222 Sum_probs=243.9
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
..+.+..++++|.++.|+-+|+| .++|+.|.+|++|+...+.+++++.+|...|..++.+.|...+++++.|..+.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45667889999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCE
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
+++|+....+ .+|.+.|..++|+.+...+++|+.|.++++||.+ +
T Consensus 88 V~TGkv~Rr~---rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR----S---------------------------- 132 (307)
T KOG0316|consen 88 VNTGKVDRRF---RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR----S---------------------------- 132 (307)
T ss_pred cccCeeeeec---ccccceeeEEEecCcceEEEeccccceeEEEEcc----c----------------------------
Confidence 9999999999 5999999999999999999999999999999982 1
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
...++++.+......|.++... +..+++|+.||+++.||++.+....-.
T Consensus 133 ----------------~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy------------ 181 (307)
T KOG0316|consen 133 ----------------RSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDY------------ 181 (307)
T ss_pred ----------------CCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhh------------
Confidence 1223344455556677777666 678899999999999998876543211
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEE
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAI 458 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 458 (612)
...+|+++.|
T Consensus 182 ----------------------------------------------------------------------~g~pit~vs~ 191 (307)
T KOG0316|consen 182 ----------------------------------------------------------------------FGHPITSVSF 191 (307)
T ss_pred ----------------------------------------------------------------------cCCcceeEEe
Confidence 2347999999
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCce--EEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccc
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAI--TVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFH 536 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 536 (612)
++|++..++++.|+++++.|-+++++ .....+|.+.- ...+++.....+++|++||.|++||+.....+ ..+..+
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGkl--L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-sk~~~~ 268 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKL--LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI-SKLSVV 268 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHH--HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceee-eeeccC
Confidence 99999999999999999999999998 67778887653 44567778889999999999999999999887 446656
Q ss_pred ccc-eeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 537 TAR-INCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 537 ~~~-i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
... |.++.++|.-..|+++.. +.+..|.-+
T Consensus 269 ~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 269 STVIVTDLSCHPTMDDFITATG-HGDLFWYQE 299 (307)
T ss_pred CceeEEeeecccCccceeEecC-Cceeceeeh
Confidence 666 899999998777777754 446677543
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=286.62 Aligned_cols=294 Identities=25% Similarity=0.428 Sum_probs=250.2
Q ss_pred EeccC-CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc-eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 54 FYGEH-GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 54 ~~~~h-~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
.+.+| ...|+++.|+|||+++++++.|+.+++|+..+.+ .+...+.+|...|..++|+||++++++++.|. .++|
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~---tiri 229 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDK---TLRI 229 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCc---eEEE
Confidence 34444 8899999999999999999999999999997665 23445689999999999999999999999998 5677
Q ss_pred EEe-cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 132 FMW-DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 132 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
|+. +.+..++++.+|...|++++|+|+++ ++++|+.|++|++||++++++...+.+|.+.|.+++|++++++|++++.
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY 308 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC
Confidence 777 46789999999999999999999996 7999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCC--eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 211 DRKGLIYDGKSGE--KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 211 dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
|+.|++||+.++. +...+....... ++..++|+|+++++++++.|+.+++||+ ..+..+..+..+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l----~~~~~~~~~~~~-------- 375 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDL----RSGKSVGTYTGH-------- 375 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEc----cCCcceeeeccc--------
Confidence 9999999999999 455553222222 6999999999999999999999999999 555555443322
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
...+.
T Consensus 376 --------------------------------------~~~~~------------------------------------- 380 (456)
T KOG0266|consen 376 --------------------------------------SNLVR------------------------------------- 380 (456)
T ss_pred --------------------------------------CCcce-------------------------------------
Confidence 11100
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 381 -------------------------------------------------------------------------------- 380 (456)
T KOG0266|consen 381 -------------------------------------------------------------------------------- 380 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc-cCceEEEEEcCCCcEEEEEc--CCCeEEEEecC
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH-RGAITVIQYSPDVSMFASAD--GNREAIVWDRV 524 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~~ 524 (612)
.+.+...++.++++++|+.|+.|++|++.++.. ...+.+| ...+..+.++|..+++++++ .|+.+++|...
T Consensus 381 ---~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 381 ---CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ---eEecccccCCCCeEEEEeCCceEEEEeCCccch--hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 123334578899999999999999999998766 6778889 89999999999999999998 78999999754
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-38 Score=260.45 Aligned_cols=275 Identities=15% Similarity=0.247 Sum_probs=240.7
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
....++++.++++.+++|..|++|++|| .+.......+.||++.|.++.|. ...+++|+.|.+|++||.+++++..
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD-~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWD-KNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEec-cccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhh
Confidence 3456788899999999999999999999 55566778899999999999988 5699999999999999999999999
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
....|...|..+.+.++++++++.|.++.+||+...... ...
T Consensus 272 tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~i--------------------------------------t~r 313 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDI--------------------------------------TLR 313 (499)
T ss_pred HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHH--------------------------------------HHH
Confidence 988899999999999999999999999999999765522 011
Q ss_pred eee-cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 445 SKI-DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 445 ~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
+.+ .|...|+.+.|+ .+++++++.|.+|++|++.++++ .+++.+|...|.|+.+ .++++++|+.|.+|++||+
T Consensus 314 rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEec
Confidence 111 155667888875 56999999999999999999988 8999999999999987 6889999999999999999
Q ss_pred CCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc-------eeeeecccccCeeeEEEecCceEE
Q 007229 524 VSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS-------RITIKNAHLGGVYGVAFMDDFNVV 596 (612)
Q Consensus 524 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~l~ 596 (612)
+.|.++ ..+.+|..-|.++.| |.+.+++|+.||+|++||+...... |+..+..|++.|..+.| |...++
T Consensus 388 ~~G~cL-RvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-D~fqIv 463 (499)
T KOG0281|consen 388 ECGACL-RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-DEFQII 463 (499)
T ss_pred cccHHH-HHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee-cceEEE
Confidence 999997 779999999999999 6779999999999999999874312 46667789999999999 588899
Q ss_pred EccCCCeEEEEEecc
Q 007229 597 SSGEDACIRVWRLAT 611 (612)
Q Consensus 597 s~~~d~~i~~w~~~~ 611 (612)
+++.|.+|.+||...
T Consensus 464 sssHddtILiWdFl~ 478 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLN 478 (499)
T ss_pred eccCCCeEEEEEcCC
Confidence 999999999999864
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=286.55 Aligned_cols=283 Identities=25% Similarity=0.361 Sum_probs=244.5
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
...|+++.|||||+++++++ ++.+++|+..+.+ .++.+.+|...|.+++|+||++++++++.|++|+|||+......
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 56899999999999999997 8999999998777 77778999999999999999999999999999999999555446
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
.+.+.+|...|++++|+|+|+.+++++.|+ .++||+..+++++..+.+|.+.|++++|++++. .+++++.|+.|++
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~---tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDG---TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRV 314 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCC---cEEEEeccCCeEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEE
Confidence 678999999999999999999999999998 578888889999999999999999999999999 5899999999999
Q ss_pred EeCCCCe--eeecccccccc--eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc---cEEEEEEecCC
Q 007229 175 YEGPPFK--FKLSHREHSNF--VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG---SIYAVSWSPDG 247 (612)
Q Consensus 175 wd~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~ 247 (612)
||+.++. +...+.++... ++++.|+|+++++++++.|+.+++||+..+.....+. +|.. .+.+...++.+
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec---ccCCcceeEecccccCCC
Confidence 9999999 55677766655 9999999999999999999999999999999888883 5554 45555667899
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCc-
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGH- 326 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~- 326 (612)
.++++++.|+.|++|++ .++..+ ..+.+|
T Consensus 392 ~~i~sg~~d~~v~~~~~----~s~~~~----------------------------------------------~~l~~h~ 421 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDS----SSGGIL----------------------------------------------QRLEGHS 421 (456)
T ss_pred CeEEEEeCCceEEEEeC----Cccchh----------------------------------------------hhhcCCC
Confidence 99999999999999999 544433 334456
Q ss_pred ccceeEEEEEecCCcEEEEEe--cCCcEEEEEcC
Q 007229 327 VKNVSTLTALKISQQTILSSS--YDGAIIKWIRG 358 (612)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~ 358 (612)
...+..+.++.. ..++++++ .|+.+++|..+
T Consensus 422 ~~~~~~~~~~~~-~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 KAAVSDLSSHPT-ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCceeccccCCC-cCeeeecCcCCCceEEEecCC
Confidence 666677777621 67777777 68889999653
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.9e-38 Score=269.66 Aligned_cols=297 Identities=18% Similarity=0.285 Sum_probs=254.7
Q ss_pred ceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 50 LHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
+.+..+.||+..|+++.|.| .+.+|++++.|+.|+||++-....+.+++.+|..+|..++|+++|..+++++.|. +
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~---~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR---F 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce---e
Confidence 44667899999999999999 8999999999999999999985557889999999999999999999999999998 6
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
+++|+.++|+++..|. -...++|+.|+|+++.++++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 7888888999998887 456789999999997799999999999999999999999999999999999999999999999
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
+.|++++||+.+.+..+...... +.....++..+|++++++.-+.|+.+.++.+. ..-.+
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~----~~~r~-------------- 420 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV----PPFRL-------------- 420 (503)
T ss_pred ccCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecc----ccccc--------------
Confidence 99999999999988887766433 33455688999999999999999999999871 11000
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
.....+.+|. ++
T Consensus 421 -----------------------------nkkK~feGh~----------------va----------------------- 432 (503)
T KOG0282|consen 421 -----------------------------NKKKRFEGHS----------------VA----------------------- 432 (503)
T ss_pred -----------------------------CHhhhhccee----------------cc-----------------------
Confidence 0001122221 11
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 433 -------------------------------------------------------------------------------- 432 (503)
T KOG0282|consen 433 -------------------------------------------------------------------------------- 432 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEe
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWD 522 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd 522 (612)
+-...+.|||||++|++|+.||.+.+||..+-++ ...+++|++++..+.|+| ....+|+++.||.|++||
T Consensus 433 --Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl--~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 433 --GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL--VSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --CceeeEEEcCCCCeEEeecCCccEEEeechhhhh--hhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 1234588999999999999999999999998887 788999999999999999 456899999999999996
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.5e-38 Score=257.04 Aligned_cols=275 Identities=20% Similarity=0.303 Sum_probs=240.7
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
....|.|+.+. ...+++|..|++|+|||..+.+ ....+.+|.+.|.|+.|. .+.+++++.+. ++++|+|+++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-c~~~L~GHtGSVLCLqyd--~rviisGSSDs---TvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-CLKILTGHTGSVLCLQYD--ERVIVSGSSDS---TVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH-HHHhhhcCCCcEEeeecc--ceEEEecCCCc---eEEEEeccCC
Confidence 56789999884 4479999999999999999988 455899999999999984 56888888888 6899999999
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee---eecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF---KLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
+++.++-+|.+.|..+.|+.. ++++++.|.++.+||+..... ...+.||...|+.+.|+ .+++++++.|.+|
T Consensus 268 e~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 999999999999999999976 799999999999999876543 34578999999999997 5699999999999
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
++|++.+++.+..+ .+|...|-++.+ .++++++|+.|.+|++||+ +.|.++
T Consensus 343 kvW~~st~efvRtl---~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi----~~G~cL-------------------- 393 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTL---NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI----ECGACL-------------------- 393 (499)
T ss_pred EEEeccceeeehhh---hcccccceehhc--cCeEEEecCCCceEEEEec----cccHHH--------------------
Confidence 99999999999999 599999999888 4899999999999999999 666554
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee---------e
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK---------L 365 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---------~ 365 (612)
+.+.||..-|.++.|. .+.+++|+.||.|++||+..+.... .
T Consensus 394 --------------------------RvLeGHEeLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~ 444 (499)
T KOG0281|consen 394 --------------------------RVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT 444 (499)
T ss_pred --------------------------HHHhchHHhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHh
Confidence 5567888999999988 5899999999999999998776553 2
Q ss_pred ceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCC
Q 007229 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 366 ~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
...|.++|..+.|+.-.+++++.|.+|.+||..++...
T Consensus 445 lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 445 LVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 23388999999999999999999999999999877644
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.4e-38 Score=244.71 Aligned_cols=288 Identities=18% Similarity=0.300 Sum_probs=251.8
Q ss_pred eeeccCCceEEEEEEcC---CCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 141 GDFDGHSRRVLSCEFKP---TRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
....+|+.+|..++|+| +| |+|++++.|+.-.+-+-+++..+-++.+|.+.|.+.....+....++++.|=+.++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 34578999999999987 44 579999999999999999999999999999999999999998889999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|.-+|..+..+ .|..-|.+++|+.|.++|++|+.+..+++||+
T Consensus 87 ~a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekllrvfdl--------------------------------- 129 (334)
T KOG0278|consen 87 DAVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL--------------------------------- 129 (334)
T ss_pred hhhhhhhhhhh----hhhheeeeEEecccchhhhccchHHHhhhhhc---------------------------------
Confidence 99999999999 89999999999999999999999999999998
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
..++.+...+.+|.+.|..+.|... .+.+++.+.|++||+||.+++...+.
T Consensus 130 ----------------n~p~App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~s------------ 180 (334)
T KOG0278|consen 130 ----------------NRPKAPPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQS------------ 180 (334)
T ss_pred ----------------cCCCCCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEE------------
Confidence 4556667788999999999999932 57777779999999999988765443
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
+..+.+++++.
T Consensus 181 ---------------------------------------------------------------------L~~~s~VtSlE 191 (334)
T KOG0278|consen 181 ---------------------------------------------------------------------LEFNSPVTSLE 191 (334)
T ss_pred ---------------------------------------------------------------------EecCCCCccee
Confidence 33456789999
Q ss_pred EccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccc
Q 007229 458 IAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHT 537 (612)
Q Consensus 458 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 537 (612)
+++||++|.++. .+.|.+||..+-.+.....++ ..|.+..++|+...+++|++|..++.||..+++.+.....+|.
T Consensus 192 vs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~ 267 (334)
T KOG0278|consen 192 VSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHF 267 (334)
T ss_pred eccCCCEEEEec-CceeEEeccccccceeeccCc---cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCC
Confidence 999999877654 467999999887763333333 3688999999999999999999999999999998855458899
Q ss_pred cceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 538 ARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 538 ~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++|.|+.|+|||..-|+|+.||+|+||....
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 9999999999999999999999999999876
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.6e-35 Score=268.93 Aligned_cols=287 Identities=27% Similarity=0.514 Sum_probs=248.3
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
+.+.+|..+|++++|+|++++|++++.||.|++|++.+++ ....+..|...+..+.|+|+++++++++.++ .+.+|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~ 78 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDK---TIRLW 78 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCC---eEEEE
Confidence 4577999999999999999999999999999999999887 5557788999999999999999999999877 57788
Q ss_pred EecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC
Q 007229 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR 212 (612)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 212 (612)
+.+.++.+..+..|...+.++.|+|++. ++++++.++.+++||+.+++....+..|...+.+++|+|+++++++++.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 8888888999999999999999999977 588888899999999999998888889999999999999998888888899
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
.+++||+++++....+. .|...+.+++|+|+++.+++++.++.+++||+ ..++.+..+.
T Consensus 158 ~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~----~~~~~~~~~~-------------- 216 (289)
T cd00200 158 TIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL----STGKCLGTLR-------------- 216 (289)
T ss_pred cEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEEC----CCCceecchh--------------
Confidence 99999999888888773 67789999999999999999999999999998 3222211100
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDAR 372 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 372 (612)
.
T Consensus 217 --------------------------------~----------------------------------------------- 217 (289)
T cd00200 217 --------------------------------G----------------------------------------------- 217 (289)
T ss_pred --------------------------------h-----------------------------------------------
Confidence 0
Q ss_pred eEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccce
Q 007229 373 IKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT 452 (612)
Q Consensus 373 i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (612)
+...
T Consensus 218 ----------------------------------------------------------------------------~~~~ 221 (289)
T cd00200 218 ----------------------------------------------------------------------------HENG 221 (289)
T ss_pred ----------------------------------------------------------------------------cCCc
Confidence 1113
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
+.+++|+|++.++++++.+|.+++|++.+++. ...+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC--VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee--EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 67788999988888888899999999987765 566678889999999999999999999999999996
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-35 Score=228.01 Aligned_cols=277 Identities=20% Similarity=0.283 Sum_probs=236.2
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
..+.+..|+++|.++.|+-||+|.++++.|.+|++|+...+. +.++..+|..+|..++.+.|+..++++|.+. .+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-liktYsghG~EVlD~~~s~Dnskf~s~GgDk---~v~ 84 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-LIKTYSGHGHEVLDAALSSDNSKFASCGGDK---AVQ 84 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-eeeeecCCCceeeeccccccccccccCCCCc---eEE
Confidence 456688999999999999999999999999999999999998 6779999999999999999999999999998 678
Q ss_pred EEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC--CeeeecccccccceEEEEECCCCCeEEEE
Q 007229 131 AFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP--FKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
+|+.++|+.++.+.+|.+.|..++|+.+.. .+++|+-|.++++||.++ .++++.+....+.|.++..+ +..+++|
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999999999999999999998 799999999999999765 56777788888999999987 6679999
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
+.||+++.||++.|+..... ...+|++++|++|++..+.++.|+++++.|- +++++++.+..
T Consensus 162 S~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk----~tGklL~sYkG--------- 223 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDK----ETGKLLKSYKG--------- 223 (307)
T ss_pred ccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeeccc----chhHHHHHhcc---------
Confidence 99999999999999887665 4678999999999999999999999999998 78887766554
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
|.+.-..+... ......+++|++||.+.+||+..........
T Consensus 224 -------------------------------------hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 224 -------------------------------------HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred -------------------------------------cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 43333333333 2236889999999999999999988887777
Q ss_pred ecccc-eEEEEe--eccEEEEecCC
Q 007229 368 KYDAR-IKCLAA--VEEVIFTAGFD 389 (612)
Q Consensus 368 ~~~~~-i~~~~~--~~~~l~~~~~~ 389 (612)
.+... +..+.+ ....++++...
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred cCCceeEEeeecccCccceeEecCC
Confidence 55555 677777 33445555443
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.3e-34 Score=295.94 Aligned_cols=317 Identities=15% Similarity=0.164 Sum_probs=239.7
Q ss_pred CCEEEEEeCCCCceeeE-----eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECC
Q 007229 38 GRSVLIRYLDKPLHVEF-----YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP 112 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~-----~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~ 112 (612)
+|-..+|+..+...... +..|.+.|.+++|+|+|++||+|+.|+.|+|||........ ...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~----------- 523 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIH----------- 523 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccc-----------
Confidence 34566777665444332 34589999999999999999999999999999976421000 0000
Q ss_pred CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccc
Q 007229 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF 192 (612)
Q Consensus 113 ~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 192 (612)
.+...+. +...+.+++|+|.....+++++.||+|++||+.+++.+..+.+|...
T Consensus 524 -------------------------~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~ 577 (793)
T PLN00181 524 -------------------------YPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR 577 (793)
T ss_pred -------------------------cceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC
Confidence 0000111 23467888998864336999999999999999999999999999999
Q ss_pred eEEEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe-cCCCEEEEEeCCCcEEEEEeecCCCC
Q 007229 193 VNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS-PDGKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 193 v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
|.+++|+| ++.+|++|+.|+.|++||+.++..+..+ .+...+.++.|+ +++.+|++|+.||.|++||+ ..
T Consensus 578 V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~----~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~----~~ 649 (793)
T PLN00181 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI----KTKANICCVQFPSESGRSLAFGSADHKVYYYDL----RN 649 (793)
T ss_pred EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE----ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEC----CC
Confidence 99999997 7889999999999999999999988887 344679999995 47999999999999999998 32
Q ss_pred CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCC
Q 007229 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
.+ .....+.+|...|..+.|.+ +..+++++.|+
T Consensus 650 ~~---------------------------------------------~~~~~~~~h~~~V~~v~f~~--~~~lvs~s~D~ 682 (793)
T PLN00181 650 PK---------------------------------------------LPLCTMIGHSKTVSYVRFVD--SSTLVSSSTDN 682 (793)
T ss_pred CC---------------------------------------------ccceEecCCCCCEEEEEEeC--CCEEEEEECCC
Confidence 21 11234457888999999975 78999999999
Q ss_pred cEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEE
Q 007229 351 AIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVS 430 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (612)
.|++||+........
T Consensus 683 ~ikiWd~~~~~~~~~----------------------------------------------------------------- 697 (793)
T PLN00181 683 TLKLWDLSMSISGIN----------------------------------------------------------------- 697 (793)
T ss_pred EEEEEeCCCCccccC-----------------------------------------------------------------
Confidence 999999864310000
Q ss_pred eeccEEEeecccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc-----------eeeccccCceE
Q 007229 431 TESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE-----------MVLEKHRGAIT 498 (612)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~-----------~~~~~~~~~i~ 498 (612)
...+..+. |...+.+++|+|++++|++|+.|+.|++|+......... .....|...|.
T Consensus 698 ----------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 698 ----------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred ----------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 00011111 334578899999999999999999999999765432111 11234566799
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
+++|+|++..|++|+.||.|+||++
T Consensus 768 ~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999999996
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.5e-34 Score=262.37 Aligned_cols=282 Identities=24% Similarity=0.409 Sum_probs=246.9
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.|++.|.+++|+|++++|++++ ++.|.+|++.+++....+.+|...+.++.|+|++++|++++.||.|++||+.+++ .
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-~ 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-C 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-c
Confidence 5778999999999999999998 8999999999988888899999999999999999999999999999999999876 4
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
...+..|...+.++.|+|+++++++++.++ .+.+|+..+++....+..|...+.+++|+|++. ++++++.|+.|++
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i 161 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDK---TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKL 161 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCC---eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEE
Confidence 456778888999999999988888888565 467777777888999999999999999999987 5888888999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
||+.+++....+..|...+.++.|+|+++.+++++.++.+++||+.+++....+ ..|...+.+++|+|++.++++++
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---RGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch---hhcCCceEEEEEcCCCcEEEEEc
Confidence 999999888888899999999999999999999999999999999988888777 36778999999999988888888
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.+|.+++|++ ..++....+ ..|...+.++.
T Consensus 239 ~~~~i~i~~~----~~~~~~~~~----------------------------------------------~~~~~~i~~~~ 268 (289)
T cd00200 239 EDGTIRVWDL----RTGECVQTL----------------------------------------------SGHTNSVTSLA 268 (289)
T ss_pred CCCcEEEEEc----CCceeEEEc----------------------------------------------cccCCcEEEEE
Confidence 7999999998 554444332 24666788888
Q ss_pred EEecCCcEEEEEecCCcEEEEE
Q 007229 335 ALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd 356 (612)
+.+. +..+++++.||.+++|+
T Consensus 269 ~~~~-~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 269 WSPD-GKRLASGSADGTIRIWD 289 (289)
T ss_pred ECCC-CCEEEEecCCCeEEecC
Confidence 8842 68899999999999985
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.1e-35 Score=242.11 Aligned_cols=290 Identities=19% Similarity=0.288 Sum_probs=244.4
Q ss_pred CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCC---CEEEEEeCCC
Q 007229 48 KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG---LRIVACGDGK 124 (612)
Q Consensus 48 ~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~~~ 124 (612)
.++.+..+ -|...|.++... +++|++|+.||.+++||.... ......+|.++|.+++|--.. ..+++++.+.
T Consensus 95 aP~pl~~~-~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq 169 (423)
T KOG0313|consen 95 APKPLQCF-LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQ 169 (423)
T ss_pred CCCccccc-cchhhhhhhccc--CceEEEeecCCeeEEEecCCc--eEEEEecCCcceeeeEEEecCCccceEEEecCCc
Confidence 34444434 499999999988 779999999999999999876 456889999999988885443 3599999988
Q ss_pred CeeeEEEEEecCCce----eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC----------------------
Q 007229 125 GKSFVRAFMWDSGTT----VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP---------------------- 178 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~---------------------- 178 (612)
.+++|.|+.++. +..-.||...|.++...+++. ++++|+.|.++++|+.+
T Consensus 170 ---tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 170 ---TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred ---eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 689999996543 334459999999999999999 79999999999999822
Q ss_pred ---CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 179 ---PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 179 ---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
++.++.++.+|.++|.++.|++ ...+++++.|.+|+.||++++.....+ .....+.++.++|..++|++|+.
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~----~~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL----TTNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred cccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee----ecCcceeEeecccccceeeecCC
Confidence 1334556889999999999998 567999999999999999999999988 67788999999999999999999
Q ss_pred CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEE
Q 007229 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTA 335 (612)
Q Consensus 256 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (612)
|..+++||. +++ ........+.+|.+.|.++.+
T Consensus 321 dr~irl~DP----R~~-------------------------------------------~gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 321 DRHIRLWDP----RTG-------------------------------------------DGSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred CCceeecCC----CCC-------------------------------------------CCceeEEeeecchhhhhheec
Confidence 999999998 322 112223567889999999999
Q ss_pred EecCCcEEEEEecCCcEEEEEcCCce-eeeeceecccceEEEEe-eccEEEEecCCCeEEEEecC
Q 007229 336 LKISQQTILSSSYDGAIIKWIRGVGY-SSKLEKKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 336 ~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~ 398 (612)
++.+..+|++++.|+++++||+++.+ +......|...|.++.+ .+..+++|+.|.+++++.-.
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 98779999999999999999999988 66666669999999999 66799999999999998643
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=232.59 Aligned_cols=290 Identities=16% Similarity=0.289 Sum_probs=248.6
Q ss_pred eeEeccCCCceEEEEECC---CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 52 VEFYGEHGYPVTVARYSP---NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~---d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
..+..||+.+|..++||| +|-+|++++.|+.-.+-+=+++. -..++.+|++.|.+.....+..+-++++.+-.
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-wigtfeghkgavw~~~l~~na~~aasaaadft--- 82 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-WIGTFEGHKGAVWSATLNKNATRAASAAADFT--- 82 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-cEEeeeccCcceeeeecCchhhhhhhhcccch---
Confidence 445789999999999997 89999999999999988888888 55699999999999999999888888887763
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-eeecccccccceEEEEECCCCCeEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
-.+|+.-+|..++.|. |...|.+++|+.|.++ |++|+.+..+|+||++..+ +...+.+|.+.|..+.|....+.+++
T Consensus 83 akvw~a~tgdelhsf~-hkhivk~~af~~ds~~-lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNY-LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhheeeeEEecccchh-hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 3566666999999887 8899999999999995 9999999999999988755 44568899999999999999999999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
.+.|++||+||.+++..++.+ ....+|+++.++++|++|.++ ..+.|.+||. .+..+++.+..
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL----~~~s~VtSlEvs~dG~ilTia-~gssV~Fwda----ksf~~lKs~k~-------- 223 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSL----EFNSPVTSLEVSQDGRILTIA-YGSSVKFWDA----KSFGLLKSYKM-------- 223 (334)
T ss_pred eccCCceEEEEeccCcEEEEE----ecCCCCcceeeccCCCEEEEe-cCceeEEecc----ccccceeeccC--------
Confidence 999999999999999999999 678899999999999866655 5678999998 44444433221
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (334)
T KOG0278|consen 224 -------------------------------------------------------------------------------- 223 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee
Q 007229 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI 447 (612)
Q Consensus 368 ~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (334)
T KOG0278|consen 224 -------------------------------------------------------------------------------- 223 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee-eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc
Q 007229 448 DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV-LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 448 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 526 (612)
+..|.+..++|+...+++|++|..++.||..++.- +.. ..+|-++|.|+.|+|||...|+|++||+|++|....+
T Consensus 224 --P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 224 --PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred --ccccccccccCCCceEEecCcceEEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 12366778889989999999999999999999876 333 4889999999999999999999999999999998766
Q ss_pred ce
Q 007229 527 EV 528 (612)
Q Consensus 527 ~~ 528 (612)
+.
T Consensus 300 ~~ 301 (334)
T KOG0278|consen 300 KT 301 (334)
T ss_pred Cc
Confidence 54
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.5e-36 Score=243.97 Aligned_cols=288 Identities=20% Similarity=0.302 Sum_probs=248.0
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee--------ccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 100 VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF--------DGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 100 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
+.+..+.|..|||||++|++++-++ ++.+|++-+|+....+ --+..+|.|+.|+.|.. ++++|+.||.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDG---FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDG---FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCCCCceEeeccccc---eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCc
Confidence 4556788999999999999999999 8899999988865544 34778999999999998 7999999999
Q ss_pred EEEEeCCCCeeeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 172 VNFYEGPPFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
|++|.+++|.+++.+. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++.++ .+|...|+...|.+||.++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf---rGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF---RGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh---cCccccccceEEcCCCCeE
Confidence 9999999999999986 89999999999999999999999999999999999999999 5999999999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
++++.||+|++|+. .+.+++.+|.... ...+|
T Consensus 364 isaSsDgtvkvW~~----KtteC~~Tfk~~~--------------------------------------------~d~~v 395 (508)
T KOG0275|consen 364 ISASSDGTVKVWHG----KTTECLSTFKPLG--------------------------------------------TDYPV 395 (508)
T ss_pred EEecCCccEEEecC----cchhhhhhccCCC--------------------------------------------Ccccc
Confidence 99999999999999 8899888876543 34456
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
..+...+.+...++.+...+++.+.++...-...... +.
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsS--------------------------------Gk--------- 434 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSS--------------------------------GK--------- 434 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeecc--------------------------------CC---------
Confidence 6666666667888888888888888775432211100 00
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL 490 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 490 (612)
...+...+.++||.|.++.+.++|+.++.+...++++ ...+
T Consensus 435 -------------------------------------REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L--E~tl 475 (508)
T KOG0275|consen 435 -------------------------------------REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL--ERTL 475 (508)
T ss_pred -------------------------------------ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce--eeee
Confidence 0123456788999999999999999999999999998 7888
Q ss_pred ccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 491 EKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
.-|...+..++-+|..+.||+-++||.+++|.
T Consensus 476 ~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 476 PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecccccccccccCcccchhhhhcccchhhhcC
Confidence 88999999999999999999999999999995
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-35 Score=228.26 Aligned_cols=282 Identities=21% Similarity=0.326 Sum_probs=232.5
Q ss_pred EEEEECCC-CCeEEEEE-------cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEe
Q 007229 194 NCIRFSPD-GSKLISVS-------SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~-~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~ 264 (612)
.++.|||- .++|+.+. ..|++.|.++..++-+.+.... .-...+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 56789982 23444432 2688999998766666555332 45678999999984 457888899999999997
Q ss_pred ecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 265 LEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
..+..++..++.|...|.++.+....+..++
T Consensus 91 -------------------------------------------------~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 91 -------------------------------------------------TMPSKPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred -------------------------------------------------CCCCcchhHHHhhhhheEEeccccccceeEE
Confidence 3445567788899999999999966688999
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (612)
+++.|++|++|+...+..+....+
T Consensus 122 tsSWD~TiKLW~~~r~~Sv~Tf~g-------------------------------------------------------- 145 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPNSVQTFNG-------------------------------------------------------- 145 (311)
T ss_pred eeccCCceEeecCCCCcceEeecC--------------------------------------------------------
Confidence 999999999999876655443321
Q ss_pred cEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEc
Q 007229 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s 503 (612)
++..|...+|+| ..+++++++.|+.+++||++.... ...++.|...|.++.|+
T Consensus 146 ------------------------h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 146 ------------------------HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWS 199 (311)
T ss_pred ------------------------CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc--eeEEEeccceeEeeccc
Confidence 344678889999 678999999999999999976543 34588999999999999
Q ss_pred C-CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCC-cEEEEeecCcEEEEEEccCCCcceeeeecccc
Q 007229 504 P-DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS-TMVATGSIDTCVIIYEIGKPASSRITIKNAHL 581 (612)
Q Consensus 504 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~ 581 (612)
. +...|++|+.|+.|+.||+++.+.....+.+|.-.|..+.|||.. ..||+++.|-+++|||...+. .++.+...|+
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~Ht 278 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-SAIETVDHHT 278 (311)
T ss_pred ccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-hhhhhhhccc
Confidence 8 778999999999999999999887767789999999999999954 589999999999999999755 7888888999
Q ss_pred cCeeeEEEe--cCceEEEccCCCeEEEEE
Q 007229 582 GGVYGVAFM--DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 582 ~~v~~~~~~--~~~~l~s~~~d~~i~~w~ 608 (612)
.-|..+.|+ +..++++++-|+.++||+
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEeccccccccCceeeecccccceeeec
Confidence 999999999 889999999999999998
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.4e-34 Score=237.20 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=235.4
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCC---CEEEEeeCcCeEEEeecCCCc
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG---EWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~---~~las~~~d~~i~iwd~~~~~ 92 (612)
|...|.++... +++|++++ ||.+++||.+ |+....+.||.++|.+++|--.. ..+++++.|.++++|.++.++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 66677888777 78899998 9999999977 57778899999999988875533 359999999999999998776
Q ss_pred e---eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-------------------------CCceeeeec
Q 007229 93 V---LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-------------------------SGTTVGDFD 144 (612)
Q Consensus 93 ~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-------------------------~~~~~~~~~ 144 (612)
. ....-.+|...|.++...++|..+++++-|. .+.+|... ++.++-.+.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~---~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT---MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccc---eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 4 2223349999999999999999999999998 57777721 112566789
Q ss_pred cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe
Q 007229 145 GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
+|.++|.++.|++.+ .+.+++.|.+|+.||+.++..+.++.+ ...+.++..+|..++|++|+.|..+++||.+++.-
T Consensus 258 GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 258 GHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 999999999999955 699999999999999999999888764 45699999999999999999999999999998754
Q ss_pred eeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS 303 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
-..-....+|...|.++.|+|. ...|++++.|+++++||+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv--------------------------------------- 375 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV--------------------------------------- 375 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe---------------------------------------
Confidence 3332223599999999999994 556889999999999999
Q ss_pred cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 304 LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
+....++..+.+|...|.++.|.. +..+++|+.|..|+++.-
T Consensus 376 ----------RS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 376 ----------RSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ----------ccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 444455677788999999999997 789999999999999854
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=239.32 Aligned_cols=287 Identities=22% Similarity=0.361 Sum_probs=251.6
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee--------eeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN--------EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
+....+.|..|||||+||++|+.||.|.+||..+++ +.+ .+--+...|.|+.||.|...|++++.++ .
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GK-lrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG---k 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGK-LRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG---K 286 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccch-hhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC---c
Confidence 456678899999999999999999999999999987 333 3335677999999999999999999998 5
Q ss_pred EEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE
Q 007229 129 VRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
|.+|...+|.+++.|. .|+..|+++.|+.|+. .+++++.|.++++.-+++|++++.++||+..|+...|++||.++++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 7899999999999997 8999999999999998 5999999999999999999999999999999999999999999999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
++.||+|++|+..+.+++.++... +...+|.++-..| +...++++...+++.+.++ .++.+++|........+
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-----qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-----QGQVVRSFSSGKREGGD 439 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEec-----cceEEeeeccCCccCCc
Confidence 999999999999999999999654 6777899988888 5668888889999999997 89999999887766555
Q ss_pred eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 287 DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
-....+...++.+++.++|+.++.|.... +.....+..|...+..++-++ ..+.+++-++||.+++|.
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~s-G~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLS-GKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeec-CceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 55555555699999999999999999554 555677888999888887763 278899999999999994
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.9e-33 Score=282.82 Aligned_cols=294 Identities=17% Similarity=0.175 Sum_probs=236.1
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC----c----eeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEE
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP----L----HVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVR 84 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~----~----~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~ 84 (612)
..|.+.|++++|+|+|++||+++ ++.|+||+..+. . ....+. +...|.+++|+| ++.+||+++.||+|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 34788999999999999999998 899999997642 1 122233 456899999987 578999999999999
Q ss_pred EeecCCCceeeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC-CCCEE
Q 007229 85 IWGTHNGFVLKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFR 162 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 162 (612)
+||+.+++ ....+.+|...|.+++|+| ++.+|++++.++ .+++|+..++..+..+..+ ..+.++.|++ ++. .
T Consensus 559 lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg---~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~-~ 632 (793)
T PLN00181 559 VWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDG---SVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR-S 632 (793)
T ss_pred EEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC---EEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC-E
Confidence 99999887 5557889999999999997 789999999988 6788888888888888755 6799999965 566 6
Q ss_pred EEEeecCCeEEEEeCCCCe-eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC------CeeeeeeccCCcc
Q 007229 163 IATCGEDFLVNFYEGPPFK-FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG------EKIGEFSSEDGHH 235 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~ 235 (612)
+++|+.||.|++||+++.+ ....+.+|...|.++.|. ++.+|++++.|++|++||+..+ ..+..+ .+|.
T Consensus 633 latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~---~gh~ 708 (793)
T PLN00181 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF---MGHT 708 (793)
T ss_pred EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE---cCCC
Confidence 9999999999999998765 456678999999999997 6789999999999999999753 345555 4889
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
..+..++|+|++++|++++.|+.+++|+. .....+..+......
T Consensus 709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~----~~~~~~~s~~~~~~~-------------------------------- 752 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGSETNEVFVYHK----AFPMPVLSYKFKTID-------------------------------- 752 (793)
T ss_pred CCeeEEEEcCCCCEEEEEeCCCEEEEEEC----CCCCceEEEecccCC--------------------------------
Confidence 99999999999999999999999999998 444433332211100
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
.........+...|.+++|++ ++..+++|+.+|.|++|++
T Consensus 753 -~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 753 -PVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -cccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 000011234667899999983 2789999999999999986
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-33 Score=219.95 Aligned_cols=294 Identities=21% Similarity=0.282 Sum_probs=235.9
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
.+++|..+++.+.++.+|. +|.+|+.|.++.+|-..+|+.+-++.+|.+.|.|++..-+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 3678999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-----CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-----KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+++..+ ....+|..+.|+++|++++....+ +.|.++|++++..+.
T Consensus 84 Gk~la~~----k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~------------------------- 134 (327)
T KOG0643|consen 84 GKQLATW----KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI------------------------- 134 (327)
T ss_pred CcEEEEe----ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh-------------------------
Confidence 9999999 678899999999999987766543 345555551100000
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
... ..++
T Consensus 135 ----------------------------~s~------------ep~~--------------------------------- 141 (327)
T KOG0643|consen 135 ----------------------------DSE------------EPYL--------------------------------- 141 (327)
T ss_pred ----------------------------ccc------------CceE---------------------------------
Confidence 000 0000
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
....+...++.+
T Consensus 142 --------------------------------------------------------------------kI~t~~skit~a 153 (327)
T KOG0643|consen 142 --------------------------------------------------------------------KIPTPDSKITSA 153 (327)
T ss_pred --------------------------------------------------------------------EecCCccceeee
Confidence 000122357888
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccc
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFH 536 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 536 (612)
-|+|-+++|++|.+||.|.+||+.++.. .....+.|+..|+.|+++||..++++++.|.+-++||..+-+.+ +.+. .
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~-Kty~-t 230 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL-KTYT-T 230 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcceEEecccCccceeeeccceeeE-EEee-e
Confidence 8999999999999999999999998753 24556779999999999999999999999999999999999987 4454 5
Q ss_pred ccceeEEEecCCCcEEEEeecCcE--E------------EEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCC
Q 007229 537 TARINCLAWSPSSTMVATGSIDTC--V------------IIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGED 601 (612)
Q Consensus 537 ~~~i~~~~~s~~~~~l~s~~~d~~--i------------~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d 601 (612)
..||++.+++|-..+++.|+.-.. | ++|++-. . +.+...++|-++|.+++|+ +|+...||++|
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-e-EEigrvkGHFGPINsvAfhPdGksYsSGGED 308 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-E-EEIGRVKGHFGPINSVAFHPDGKSYSSGGED 308 (327)
T ss_pred cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH-H-HHhccccccccCcceeEECCCCcccccCCCC
Confidence 789999999997777776653221 1 1222211 1 4566788999999999999 88999999999
Q ss_pred CeEEEEEecc
Q 007229 602 ACIRVWRLAT 611 (612)
Q Consensus 602 ~~i~~w~~~~ 611 (612)
|.||+.-.+.
T Consensus 309 G~VR~h~Fd~ 318 (327)
T KOG0643|consen 309 GYVRLHHFDS 318 (327)
T ss_pred ceEEEEEecc
Confidence 9999987653
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.1e-33 Score=218.41 Aligned_cols=277 Identities=16% Similarity=0.215 Sum_probs=227.2
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec--ccccccceEEEEECC-CCCeEEEEEcCCcEEEE
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS--HREHSNFVNCIRFSP-DGSKLISVSSDRKGLIY 217 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw 217 (612)
+.+++|...+.+++|+.+|. .+++|+.|+++.+|++...+.... .++|.+.|..++|+| ...++++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 55778999999999999999 599999999999999988766554 568999999999998 45689999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|.+.+++...+ .....-..+.|+|+|++++.++.|..|.+.|. .+.+.+...+.
T Consensus 93 d~r~~k~~~~i----~~~~eni~i~wsp~g~~~~~~~kdD~it~id~----r~~~~~~~~~~------------------ 146 (313)
T KOG1407|consen 93 DIRSGKCTARI----ETKGENINITWSPDGEYIAVGNKDDRITFIDA----RTYKIVNEEQF------------------ 146 (313)
T ss_pred EeccCcEEEEe----eccCcceEEEEcCCCCEEEEecCcccEEEEEe----cccceeehhcc------------------
Confidence 99999999998 45555567899999999999999999999998 55555544332
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
...+..+.|. .++++++.....|+|.|.....-+++.....
T Consensus 147 -----------------------------~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~A--------- 187 (313)
T KOG1407|consen 147 -----------------------------KFEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKA--------- 187 (313)
T ss_pred -----------------------------cceeeeeeec-CCCCEEEEecCCceEEEEecccccccccccc---------
Confidence 2244556666 2266666666678887775543333222221
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
|+....|+.
T Consensus 188 -----------------------------------------------------------------------H~snCicI~ 196 (313)
T KOG1407|consen 188 -----------------------------------------------------------------------HPSNCICIE 196 (313)
T ss_pred -----------------------------------------------------------------------CCcceEEEE
Confidence 445577899
Q ss_pred EccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccc
Q 007229 458 IAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHT 537 (612)
Q Consensus 458 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 537 (612)
|+|+|+++|+|+.|..+.+||++.. .+.+.+..+.-+|+.+.||.||++||+|++|..|-|=++++|..+.+ .. +.
T Consensus 197 f~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-I~-~~ 272 (313)
T KOG1407|consen 197 FDPDGRYFATGSADALVSLWDVDEL--ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-IP-CE 272 (313)
T ss_pred ECCCCceEeeccccceeeccChhHh--hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE-ee-cc
Confidence 9999999999999999999999855 44888999999999999999999999999999999999999998754 33 78
Q ss_pred cceeEEEecCCCcEEEEeecC
Q 007229 538 ARINCLAWSPSSTMVATGSID 558 (612)
Q Consensus 538 ~~i~~~~~s~~~~~l~s~~~d 558 (612)
++...++|+|...+||-++.|
T Consensus 273 ~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 273 GPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CCceeEEecCCCceeeEEecC
Confidence 999999999999999988765
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-33 Score=257.88 Aligned_cols=262 Identities=19% Similarity=0.237 Sum_probs=193.9
Q ss_pred eeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEE-------------ECC---CC
Q 007229 52 VEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ-------------WSP---DG 114 (612)
Q Consensus 52 ~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~-------------~s~---~~ 114 (612)
.+.+. +|.+.|.++.||+||+|||+|+.||.|+||.+...+. ...+.+.-.++- -++ .+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~----~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER----MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch----hcccccccchhhhhhhhccccCccccccccccc
Confidence 33455 8999999999999999999999999999999987542 111111111111 111 00
Q ss_pred CEEEE--EeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc
Q 007229 115 LRIVA--CGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN 191 (612)
Q Consensus 115 ~~l~~--~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 191 (612)
+.... +...... .+-....- ..++++.|.||.+.|..+.|+.++ +|++++.|.+||+|++....++..+. |.+
T Consensus 335 ~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccc-cCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 11110 0011100 00000111 467888999999999999999987 69999999999999999999999885 999
Q ss_pred ceEEEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC
Q 007229 192 FVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 192 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
-|+|++|+| |.+|+++|+-||.++||++...+...-. ....-|++++|.|||++.++|+.+|.+++|+. ..
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~----Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t----~~ 482 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN----DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT----EG 482 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh----hhhhhheeEEeccCCceEEEEEeccEEEEEEc----cC
Confidence 999999999 7889999999999999999888777666 55688999999999999999999999999999 66
Q ss_pred CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCC
Q 007229 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
.++...+..... .. +.. .|. .|+.+.|.+.+...+++.+.|.
T Consensus 483 lk~~~~~~I~~~--------------------------------~~----Kk~-~~~-rITG~Q~~p~~~~~vLVTSnDS 524 (712)
T KOG0283|consen 483 LKLVSDFHIRLH--------------------------------NK----KKK-QGK-RITGLQFFPGDPDEVLVTSNDS 524 (712)
T ss_pred CeEEEeeeEeec--------------------------------cC----ccc-cCc-eeeeeEecCCCCCeEEEecCCC
Confidence 666665544321 00 111 133 8999999965566788889999
Q ss_pred cEEEEEcCCceeeeece
Q 007229 351 AIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~ 367 (612)
.|+|+|.+....+..+.
T Consensus 525 rIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 525 RIRIYDGRDKDLVHKFK 541 (712)
T ss_pred ceEEEeccchhhhhhhc
Confidence 99999987665554443
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2e-32 Score=216.89 Aligned_cols=302 Identities=16% Similarity=0.174 Sum_probs=244.6
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~ 92 (612)
.++|.-.++.+.|+.+|.+|.+++ |....||-..+|+.+-++.||++.|.|++.+.+.+.|++|+.|.++++||+++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 346777899999999999999999 8999999999999999999999999999999999999999999999999999998
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC--eeeEEEEEec-------CCceeeeeccCCceEEEEEEcCCCCEEE
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG--KSFVRAFMWD-------SGTTVGDFDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~--~~~i~i~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l 163 (612)
++. .......|..+.|+++|.+++.+.++.- ...+.+++.. ..++...+..+...++.+-|.|-+++ +
T Consensus 86 ~la--~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~-i 162 (327)
T KOG0643|consen 86 QLA--TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET-I 162 (327)
T ss_pred EEE--EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE-E
Confidence 653 2345678999999999999988876532 2245555555 45678889999999999999999994 9
Q ss_pred EEeecCCeEEEEeCCCC-eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 164 ATCGEDFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
++|.+||.|..||++++ +.+...+.|+..|+.|.++||..++++++.|.+.++||..+-+.+.++ ....|+++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty----~te~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY----TTERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe----eeccccccee
Confidence 99999999999999997 455557889999999999999999999999999999999999999999 6788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
++|...+++.++.....-+=.. ......|.. ++|++ -.+..+..
T Consensus 239 isP~~d~VilgGGqeA~dVTTT------~~r~GKFEA-----------------------------rFyh~-i~eEEigr 282 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTT------STRAGKFEA-----------------------------RFYHL-IFEEEIGR 282 (327)
T ss_pred cccccceEEecCCceeeeeeee------cccccchhh-----------------------------hHHHH-HHHHHhcc
Confidence 9998877777764322222111 110111110 01110 01223456
Q ss_pred ecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
.++|-++|+++++++. ++..++|++||.|++...+.
T Consensus 283 vkGHFGPINsvAfhPd-GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 283 VKGHFGPINSVAFHPD-GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccccccCcceeEECCC-CcccccCCCCceEEEEEecc
Confidence 7899999999999942 88999999999999986544
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-32 Score=218.07 Aligned_cols=275 Identities=18% Similarity=0.250 Sum_probs=220.7
Q ss_pred cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-Ceee-ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC
Q 007229 145 GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFK-LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG 222 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 222 (612)
...+.|.+++|||...++++.++.|++||+|+++. +... +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 45678999999996666788999999999999887 3333 336679999999999999999999999999999999999
Q ss_pred CeeeeeeccCCccccEEEEEEecCCC--EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEE
Q 007229 223 EKIGEFSSEDGHHGSIYAVSWSPDGK--KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300 (612)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (612)
+....- .|.++|..+.|-+... .|++|+-|++|++||. +...++.+++.+.
T Consensus 105 Q~~~v~----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~----R~~~pv~t~~LPe------------------- 157 (347)
T KOG0647|consen 105 QVSQVA----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT----RSSNPVATLQLPE------------------- 157 (347)
T ss_pred Ceeeee----ecccceeEEEEecCCCcceeEecccccceeeccc----CCCCeeeeeeccc-------------------
Confidence 777666 8999999999998655 8999999999999999 7777777766553
Q ss_pred EEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeec
Q 007229 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVE 380 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 380 (612)
.+.++... ..+++.+..+..|.+|+++++.......
T Consensus 158 ----------------------------RvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~------------- 193 (347)
T KOG0647|consen 158 ----------------------------RVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRI------------- 193 (347)
T ss_pred ----------------------------eeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhh-------------
Confidence 12222111 5677777788888888876554322110
Q ss_pred cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 460 (612)
+-+.+..+.|++..+
T Consensus 194 -----------------------------------------------------------------~SpLk~Q~R~va~f~ 208 (347)
T KOG0647|consen 194 -----------------------------------------------------------------ESPLKWQTRCVACFQ 208 (347)
T ss_pred -----------------------------------------------------------------cCcccceeeEEEEEe
Confidence 111345688999999
Q ss_pred CCCeEEEEecCCeEEEEEccCcccccceeeccccC---------ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---------AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
|....|.|+-+|.+.|..++.+.......++.|.. .|++++|+|.-..|++++.||++.+||-.....+ +
T Consensus 209 d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL-k 287 (347)
T KOG0647|consen 209 DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL-K 287 (347)
T ss_pred cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh-h
Confidence 99888999999999999998764444667777763 4788999999999999999999999998887776 4
Q ss_pred cccccccceeEEEecCCCcEEEEee
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
....|..+|++.+|+.+|.++|-+.
T Consensus 288 ~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 288 TSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccCcCCCccceeEecCCCCEEEEEe
Confidence 5566999999999999999988653
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=221.96 Aligned_cols=294 Identities=19% Similarity=0.369 Sum_probs=242.8
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC-----------------CceeeeeeeecCCCeEEEEECCCCC
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN-----------------GFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..+..|..++.+.+|||||.++|+|+.|..|+|.|++. +.++.+++..|..+|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45778999999999999999999999999999999871 1125567778999999999999999
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeee--ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec---ccccc
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDF--DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS---HREHS 190 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~ 190 (612)
.|++++.|+ .++++++......+.+ -....+|.++.|+|.|.+ ++.|..-.++++||+.+.++... -..|.
T Consensus 186 ILiS~srD~---tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 186 ILISGSRDN---TVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred eEEeccCCC---eEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999998 5677877743333222 335679999999999995 99999999999999999887655 34689
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc-ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH-GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
+.|+++.+++.+++.++++.||.|++||--+++++.++. +.|. ..|.+..|..+++++++.+.|..+++|.+ .
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi----~ 335 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI----S 335 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH--hhcCCceeeeEEEccCCeEEeecCCcceeeeeee----c
Confidence 999999999999999999999999999999999999984 3454 57899999999999999999999999999 9
Q ss_pred CCeeEeeeeccCccccceeeeeeecc--CCEEEEEE-cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEE
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVS-LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 346 (612)
+++++..+................|+ .++++.-. ..+.+.-||.++..+....-.+|++.+..+.-++. +..+.++
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~-~p~FmTc 414 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV-EPAFMTC 414 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC-CCceeee
Confidence 99999998876543333333333444 44444433 35789999988888877778899999998877732 7889999
Q ss_pred ecCCcEEEEEc
Q 007229 347 SYDGAIIKWIR 357 (612)
Q Consensus 347 ~~dg~i~~wd~ 357 (612)
+.|-..++|-.
T Consensus 415 sdD~raRFWyr 425 (430)
T KOG0640|consen 415 SDDFRARFWYR 425 (430)
T ss_pred cccceeeeeee
Confidence 99999999954
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=234.25 Aligned_cols=282 Identities=20% Similarity=0.301 Sum_probs=233.6
Q ss_pred CCCceEEEEECCCCCE-EEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC
Q 007229 58 HGYPVTVARYSPNGEW-IASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS 136 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~-las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~ 136 (612)
....|++++|||...+ +|+.+ .-.+.||+..+.. ..+.+...+..+.++.|-.||+.|++|...+ .++|++..+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~-~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG---~V~vfD~k~ 99 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRS-VRKTFSRFKDVVYSVDFRSDGRLLAAGDESG---HVKVFDMKS 99 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhh-hhhhHHhhccceeEEEeecCCeEEEccCCcC---cEEEecccc
Confidence 3468999999995432 34333 3479999999887 5556778889999999999999999888877 578888667
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCC-CCeEEEEEcCCcEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGL 215 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~ 215 (612)
...++.+.+|+.+|..+.|+|+++.++++|+.|+.+++||+.+...+..+.+|++.|.|.+|+|. +..+++|+.||.|+
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 77889999999999999999999989999999999999999999987789999999999999995 45889999999999
Q ss_pred EEecCCC-CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 216 IYDGKSG-EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 216 vwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
+||++.. ..+.++ .|..+|..+.+.|.|..+++++. ..+++||+ .++..
T Consensus 180 l~DtR~~~~~v~el----nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl----~~G~q--------------------- 229 (487)
T KOG0310|consen 180 LWDTRSLTSRVVEL----NHGCPVESVLALPSGSLIASAGG-NSVKVWDL----TTGGQ--------------------- 229 (487)
T ss_pred EEEeccCCceeEEe----cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEe----cCCce---------------------
Confidence 9999987 777777 89999999999999999998875 48999999 43322
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
.+.....|...|+++.+.. ++..|++++-|+.+++||+.+-+...
T Consensus 230 ------------------------ll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~---------- 274 (487)
T KOG0310|consen 230 ------------------------LLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVH---------- 274 (487)
T ss_pred ------------------------ehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEE----------
Confidence 2233344999999999993 17999999999999999866543322
Q ss_pred EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEE
Q 007229 375 CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVT 454 (612)
Q Consensus 375 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 454 (612)
.+..+++|.
T Consensus 275 -----------------------------------------------------------------------s~~~~~pvL 283 (487)
T KOG0310|consen 275 -----------------------------------------------------------------------SWKYPGPVL 283 (487)
T ss_pred -----------------------------------------------------------------------eeeccccee
Confidence 222345799
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEcc
Q 007229 455 ACAIAPDGSEAIVGGQNGKLHIYSIS 480 (612)
Q Consensus 455 ~~~~s~~~~~l~~~~~dg~v~i~d~~ 480 (612)
+++++|+++.+++|..||.+.+-+..
T Consensus 284 siavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 284 SIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEecCCCceEEEecccceeeeehhh
Confidence 99999999999999999988877543
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.5e-32 Score=258.84 Aligned_cols=305 Identities=22% Similarity=0.336 Sum_probs=229.5
Q ss_pred cCCCceEEEEECCCCCEEEEee--CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 57 EHGYPVTVARYSPNGEWIASAD--VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
.++..|.+++.+|||..+|||+ .||.++||+.+.--... ..++.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------------------------------~~~~~ 56 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------------------------------EEKNE 56 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------------------------------hhhhc
Confidence 3466799999999999999999 89999999876421000 00000
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC------------------CCeeeecccccccceEEE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP------------------PFKFKLSHREHSNFVNCI 196 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~v~~~ 196 (612)
+..+.+.....|.+.|.|+.|+|||+| ||+|++|+.|.+|+.. ..+....+.+|...|..+
T Consensus 57 ~l~k~l~~m~~h~~sv~CVR~S~dG~~-lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv 135 (942)
T KOG0973|consen 57 NLPKHLCTMDDHDGSVNCVRFSPDGSY-LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV 135 (942)
T ss_pred ccchhheeeccccCceeEEEECCCCCe-EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee
Confidence 112333344445555556666666553 5666666555555533 345667788999999999
Q ss_pred EECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEee
Q 007229 197 RFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 197 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 276 (612)
+|+|++.+|++++.|++|.+||..+.+.+..+ .+|.+.|..+.|.|-|+||++-+.|++|++|+. .+....+.
T Consensus 136 ~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl---~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt----~dw~i~k~ 208 (942)
T KOG0973|consen 136 NWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL---RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT----SDWGIEKS 208 (942)
T ss_pred ccCCCccEEEEecccceEEEEccccceeeeee---ecccccccceEECCccCeeeeecCCceEEEEEc----ccceeeEe
Confidence 99999999999999999999999999888888 599999999999999999999999999999997 33333322
Q ss_pred eeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
+..+. +
T Consensus 209 It~pf----------------------------------------------------------~---------------- 214 (942)
T KOG0973|consen 209 ITKPF----------------------------------------------------------E---------------- 214 (942)
T ss_pred eccch----------------------------------------------------------h----------------
Confidence 22110 0
Q ss_pred cCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEE
Q 007229 357 RGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436 (612)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (612)
T Consensus 215 -------------------------------------------------------------------------------- 214 (942)
T KOG0973|consen 215 -------------------------------------------------------------------------------- 214 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccceeeecccceEEEEEEccCCCeEEEEec----CCeEEEEEccCcccccceeeccccCceEEEEEcCC-----Cc
Q 007229 437 LLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ----NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD-----VS 507 (612)
Q Consensus 437 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~ 507 (612)
+.........+.|||||++|++... -..+.|.+-.+.+. ...+-+|.+++.++.|+|. .+
T Consensus 215 ---------~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 215 ---------ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred ---------hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee--eeeeecCCCceEEEEeChHHhccccc
Confidence 0000113566889999999998642 23688888766655 6788999999999999981 12
Q ss_pred ------------EEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 508 ------------MFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 508 ------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.+|+|+.|++|.||.....++++....-....|..++|+|||..|+.+|.||+|.+..++.
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 6899999999999999888877555555578899999999999999999999999999876
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=220.16 Aligned_cols=299 Identities=16% Similarity=0.192 Sum_probs=239.0
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-----------------C-eeeecccccccceEEEEECCCC
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-----------------F-KFKLSHREHSNFVNCIRFSPDG 202 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----------------~-~~~~~~~~~~~~v~~~~~s~~~ 202 (612)
..+..|..++.+.+|+|||. ++++|+.|..|++.|++. + -.++++-.|.++|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 44677999999999999999 699999999999999761 1 2355677899999999999999
Q ss_pred CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 203 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
..|++++.|++|++||.........+... ....+|.++.|+|.|.+|++|..-..+++||+ .+.++...-..
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv----~T~QcfvsanP--- 256 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDV----NTYQCFVSANP--- 256 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEec----cceeEeeecCc---
Confidence 99999999999999998765444333222 55678999999999999999999999999999 66665443221
Q ss_pred cccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 283 NAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
-.+|.+.|+++.+++. +++.++++.||.|++||--++++
T Consensus 257 ----------------------------------------d~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 257 ----------------------------------------DDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred ----------------------------------------ccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHH
Confidence 1359999999999932 88999999999999999877776
Q ss_pred eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 363 SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
+.....
T Consensus 296 v~t~~~-------------------------------------------------------------------------- 301 (430)
T KOG0640|consen 296 VRTIGN-------------------------------------------------------------------------- 301 (430)
T ss_pred HHHHHh--------------------------------------------------------------------------
Confidence 655431
Q ss_pred ceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccC---ceEEEEEcCCCcEEEEEcC-CCeE
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---AITVIQYSPDVSMFASADG-NREA 518 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~-d~~i 518 (612)
-..+..|.+..|..+++|+++.+.|..+++|.+.+++......-.+-.+ --+...|+....+++.-++ .+.+
T Consensus 302 ----AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~sl 377 (430)
T KOG0640|consen 302 ----AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSL 377 (430)
T ss_pred ----hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCce
Confidence 1123468899999999999999999999999999998733322221111 2344567777777776554 4679
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
.-||.++...+.....+|.+.+..+.-||.+.-+++|+.|..+|+|--+
T Consensus 378 csWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 378 CSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 9999999888766677899999999999999999999999999999654
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-32 Score=213.68 Aligned_cols=281 Identities=16% Similarity=0.218 Sum_probs=228.3
Q ss_pred eEEEEcc--CCCEEEEe-------cCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCC-CEEEEeeCcCeEEEeecC
Q 007229 22 ILISGNP--KTDTILYC-------NGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNG-EWIASADVSGSVRIWGTH 89 (612)
Q Consensus 22 ~~~~~s~--d~~~l~~~-------~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~ 89 (612)
.++.||| ++++.+.. ++|.+.|.++..++-++.+. .-+..+..++||++. ..+++++.||+++|||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4788998 44333222 24799999997555555443 246789999999964 677888899999999987
Q ss_pred CCceeeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
........++.|..+|.++.|++-. +.+++.+-|+ .|++|+.+..+.+.++.+|...|...+|+|..+.++++++.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~---TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDG---TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCC---ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 6666777899999999999999954 5566667777 57888888999999999999999999999998889999999
Q ss_pred CCeEEEEeCCCCeeeecccccccceEEEEECC-CCCeEEEEEcCCcEEEEecCCCC-eeeeeeccCCccccEEEEEEecC
Q 007229 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGE-KIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
|+++++||++.......+..|...|.++.|+. +.+.|++|+.|+.|++||++.-+ ++.++ .+|.-.|..++|+|.
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL---~gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL---NGHGLAVRKVKFSPH 245 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee---cCCceEEEEEecCcc
Confidence 99999999876555555889999999999997 56788999999999999998754 34444 599999999999994
Q ss_pred -CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 247 -GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 247 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
...|++++.|-++++||. . .....+.+...
T Consensus 246 ~~~lLaSasYDmT~riw~~----~---------------------------------------------~~ds~~e~~~~ 276 (311)
T KOG0277|consen 246 HASLLASASYDMTVRIWDP----E---------------------------------------------RQDSAIETVDH 276 (311)
T ss_pred hhhHhhhccccceEEeccc----c---------------------------------------------cchhhhhhhhc
Confidence 568899999999999998 2 12223344456
Q ss_pred cccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 326 HVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
|+.-+..+.|+...+.++++++.|+.+++|+.
T Consensus 277 HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 277 HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEeccccccccCceeeecccccceeeecc
Confidence 88888999999556899999999999999974
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=235.35 Aligned_cols=292 Identities=22% Similarity=0.307 Sum_probs=245.5
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.....+..|.+.+..+.|-++...|++|+.|..|++|++...+. +...+.+..+.|+.+.|.++++++++++.++.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~--- 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN--- 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc---
Confidence 34455788999999999999999999999999999999987764 56678888899999999999999999999984
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
.++|+.+..+..+++.+|++.|+++.|..... .+++|+.|.+|++||+....+..++.. ...+..+..+ ...+++|
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISG 318 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeec
Confidence 68999999999999999999999999998876 499999999999999999888877542 3446666665 5578899
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
..|++|++||.++..+.... ...+.|+++..++++..+++++.|.++.+.|+ .+.+....+....
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv----~~gg~vtSl~ls~~g~~lLsssRDdtl~viDl----Rt~eI~~~~sA~g------- 383 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSV----PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDL----RTKEIRQTFSAEG------- 383 (459)
T ss_pred ccccceEEEeccCCceeeEe----ecCcceeeEeeccCCeEEeeecCCCceeeeec----ccccEEEEeeccc-------
Confidence 99999999999999999888 55669999999999999999999999999998 5544443332210
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
+. +
T Consensus 384 -----------------------------------------------------~k-~----------------------- 386 (459)
T KOG0288|consen 384 -----------------------------------------------------FK-C----------------------- 386 (459)
T ss_pred -----------------------------------------------------cc-c-----------------------
Confidence 00 0
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 387 -------------------------------------------------------------------------------- 386 (459)
T KOG0288|consen 387 -------------------------------------------------------------------------------- 386 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEE
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
....+.+.|||++.|+++|+.||.|+||++.++++............|++++|+|.|..|++++.++.+.+|
T Consensus 387 -asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 387 -ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 012466889999999999999999999999999985444444434469999999999999999999999999
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-30 Score=209.63 Aligned_cols=298 Identities=16% Similarity=0.193 Sum_probs=244.9
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
+-+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++++ .+.+..++.++..++|......++.++...+. .|+
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~-tIr 83 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDD-TIR 83 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCC-ceE
Confidence 3444666788999999999999999999999999999999994 45777788899999999888888887773332 688
Q ss_pred EEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 131 AFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.....+.+.++.|.||...|.+++.+|-+. .+++++.|++|++||++..++...+.-. .-..++|.|+|-++|++..
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecC
Confidence 888889999999999999999999999998 7999999999999999987776655433 3345689999999998888
Q ss_pred CCcEEEEecCCC--CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 211 DRKGLIYDGKSG--EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 211 dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
...|++||++.- .+...+....+.....+.+.|+|||++++.+...+.+.+.|. -.|....++....
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA----f~G~~~~tfs~~~------- 229 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA----FDGTVKSTFSGYP------- 229 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc----cCCcEeeeEeecc-------
Confidence 779999999864 345555444466788999999999999999999999999999 7888877776553
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
....+..-+...++++++++|+.||+|.+|+++++........
T Consensus 230 -------------------------------------~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 230 -------------------------------------NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred -------------------------------------CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 1112222222244589999999999999999999999887776
Q ss_pred -cccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 369 -YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 369 -~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
+..++.|+.+++.+...++.+..+.+|-.....
T Consensus 273 ~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 273 PNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred CCCCCccccccCCceeeeeecCceEEEEeccccc
Confidence 689999999999999999999999999765443
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=225.48 Aligned_cols=285 Identities=21% Similarity=0.288 Sum_probs=245.1
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 227 (612)
..+.++...|..+ .+++|+.|..+.++|.+..+.+..++||...|+.+.|+|+...+++++.|-.|+||..........
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 4678888888755 599999999999999999999999999999999999999999999999999999999887775555
Q ss_pred eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCE
Q 007229 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307 (612)
Q Consensus 228 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (612)
. ..|..+|+.+..+|.|.||++++.||...+.|+ +++..+...
T Consensus 299 ~---~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~----~~g~~lt~v------------------------------ 341 (506)
T KOG0289|consen 299 S---RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI----SSGSQLTVV------------------------------ 341 (506)
T ss_pred c---ccccccceeeeeccCCcEEEEecCCceEEEEEc----cCCcEEEEE------------------------------
Confidence 5 489999999999999999999999999999888 443332211
Q ss_pred EEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEec
Q 007229 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAG 387 (612)
Q Consensus 308 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 387 (612)
+.++
T Consensus 342 ---------------------------------------s~~~------------------------------------- 345 (506)
T KOG0289|consen 342 ---------------------------------------SDET------------------------------------- 345 (506)
T ss_pred ---------------------------------------eecc-------------------------------------
Confidence 1100
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 467 (612)
..-.+++.+|+|||.++.+
T Consensus 346 -------------------------------------------------------------s~v~~ts~~fHpDgLifgt 364 (506)
T KOG0289|consen 346 -------------------------------------------------------------SDVEYTSAAFHPDGLIFGT 364 (506)
T ss_pred -------------------------------------------------------------ccceeEEeeEcCCceEEec
Confidence 0014788999999999999
Q ss_pred EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecC
Q 007229 468 GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP 547 (612)
Q Consensus 468 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~ 547 (612)
|..||.|+|||+.++.. ...+++|+++|..++|+.+|-+||++.+|+.|++||++..+...........++.++.|.+
T Consensus 365 gt~d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred cCCCceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence 99999999999998875 7889999999999999999999999999999999999988765443333445799999999
Q ss_pred CCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 548 SSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 548 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
.|.+|+.++.|=+|++++-.+..+.++..+..|.+..+.+.|. ...+++++|.|..++++.+
T Consensus 443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9999999988877888776665668888899999999999999 8899999999999999875
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=229.97 Aligned_cols=286 Identities=16% Similarity=0.219 Sum_probs=237.2
Q ss_pred ccCCCCCCCceeEEEEccCCC-EEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecC
Q 007229 11 ACAPSTERGRGILISGNPKTD-TILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~ 89 (612)
++.+. +...|++++|||... -+|+.++-.+.||+..+....+.+......|.++.|-.||++||.|+..|.|+|+|+.
T Consensus 20 ~~~~k-e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 20 PPVHK-EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccccc-ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 34443 345999999999555 4677788999999999988888888889999999999999999999999999999966
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEE-EEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRI-VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
+.. +...+..|+.++....|+|++..+ ++++++. .+++|+.++......+.+|++.|.|.+|+|..+.+++||+.
T Consensus 99 ~r~-iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~---v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 99 SRV-ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK---VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred cHH-HHHHHhhccCceeEEEecccCCeEEEecCCCc---eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 644 666899999999999999976655 5555555 57888888888877999999999999999998889999999
Q ss_pred CCeEEEEeCCCC-eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 169 DFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 169 d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
||.|++||.+.. ..+.++ .|..+|..+.+-|.|..+++++. ..++|||+.+|...... ...|...|+|+++..++
T Consensus 175 Dg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~--~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS--MFNHNKTVTCLRLASDS 250 (487)
T ss_pred CceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh--hhcccceEEEEEeecCC
Confidence 999999999887 555555 69999999999999999998874 67999999965544333 12599999999999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
..|++++-|+.+++||+ .+.+.+..+.. .
T Consensus 251 ~rLlS~sLD~~VKVfd~----t~~Kvv~s~~~-----------------------------------------------~ 279 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDT----TNYKVVHSWKY-----------------------------------------------P 279 (487)
T ss_pred ceEeecccccceEEEEc----cceEEEEeeec-----------------------------------------------c
Confidence 99999999999999998 77777766653 3
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
++|.+++.++ +++.++.|..||.+.+-+.
T Consensus 280 ~pvLsiavs~-dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 280 GPVLSIAVSP-DDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cceeeEEecC-CCceEEEecccceeeeehh
Confidence 4677777774 2677888888887766643
No 84
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=5.3e-31 Score=234.46 Aligned_cols=461 Identities=19% Similarity=0.279 Sum_probs=294.0
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee------cccccccceEEEEECCCCCeEEEEEcC
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL------SHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
+.+..+.+|.+.|+.+.|+|-...+|++|+.|..|++|.+..+.... .+.+..-.|.++.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 34566789999999999999888899999999999999988543221 133345578999999966556666678
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
|++++||+.+++.+..+ .+|...|.+..|+.||.+|++.+.|+.|+|||.+ ..++.++..+.+... .. ..
T Consensus 150 g~v~i~D~stqk~~~el---~~h~d~vQSa~WseDG~llatscKdkqirifDPR---a~~~piQ~te~H~~~--rd--sR 219 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVEL---SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR---ASMEPIQTTEGHGGM--RD--SR 219 (1012)
T ss_pred ceEEEEEcccCceeecc---cCCchhhhccccccCCceEeeecCCcceEEeCCc---cCCCccccccccccc--hh--he
Confidence 99999999999999988 4999999999999999999999999999999984 345556555444322 11 22
Q ss_pred eeccCC--EEEEEEcC----CEEEEEEcCCCCCCceeecCcccceeEEEEEecC-CcEEEEEecCCcEEEEEcCCceeee
Q 007229 292 CLWQND--HLITVSLG----GIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS-QQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 292 ~~~~~~--~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
+.|.++ ++++.+.+ ..+++||......+...+.-....-.-+-..+++ +-++++|-.+..+..+.+...+...
T Consensus 220 v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyL 299 (1012)
T KOG1445|consen 220 VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYL 299 (1012)
T ss_pred eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcch
Confidence 334433 66666654 5799999888777776655433222222222333 4455566667788888776543322
Q ss_pred ecee---------------------cccc--------------eEEEEe-------e----------------ccEE---
Q 007229 365 LEKK---------------------YDAR--------------IKCLAA-------V----------------EEVI--- 383 (612)
Q Consensus 365 ~~~~---------------------~~~~--------------i~~~~~-------~----------------~~~l--- 383 (612)
.... .... |.++.. . ++++
T Consensus 300 s~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~ 379 (1012)
T KOG1445|consen 300 SHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGT 379 (1012)
T ss_pred hhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCc
Confidence 1000 0000 000000 0 0000
Q ss_pred -----------------------------E-Ee--------------------cCCC--------------eEEEEec--
Q 007229 384 -----------------------------F-TA--------------------GFDN--------------KVWRVPL-- 397 (612)
Q Consensus 384 -----------------------------~-~~--------------------~~~~--------------~i~~~~~-- 397 (612)
+ ++ ..+. .++-.+.
T Consensus 380 Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~ 459 (1012)
T KOG1445|consen 380 NQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRP 459 (1012)
T ss_pred cccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccc
Confidence 0 00 0000 0000000
Q ss_pred ---CCC-------------CCC-------------ccceeccCC-----Ccceee------------------------e
Q 007229 398 ---CEG-------------ECG-------------DAEHIDVGS-----QPLDLS------------------------L 419 (612)
Q Consensus 398 ---~~~-------------~~~-------------~~~~~~~~~-----~~~~~~------------------------~ 419 (612)
..+ ... ......... .+...+ .
T Consensus 460 ~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~ 539 (1012)
T KOG1445|consen 460 YEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPL 539 (1012)
T ss_pred cccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccc
Confidence 000 000 000000000 000000 0
Q ss_pred cCC------------------------------------------------CCcE--EEEEeeccEEEee---cc----c
Q 007229 420 ALS------------------------------------------------SPEL--ALVSTESGVILLD---SL----K 442 (612)
Q Consensus 420 ~~~------------------------------------------------~~~~--~~~~~~~~~~~~~---~~----~ 442 (612)
++. ..+. -+.+..+.+-+++ .+ .
T Consensus 540 s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDg 619 (1012)
T KOG1445|consen 540 SQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDG 619 (1012)
T ss_pred cccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcc
Confidence 000 0000 0001111122222 11 1
Q ss_pred ceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCccc-----ccceeeccccCceEEEEEcC-CCcEEEEEcCC
Q 007229 443 VMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTL-----TEEMVLEKHRGAITVIQYSP-DVSMFASADGN 515 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~-----~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d 515 (612)
.+..+..+..|+.+.|.| |...||+++.||.|++|.+..+.+ .+...+..|...|+++.|+| -...|++++.|
T Consensus 620 v~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 620 VMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred cccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 122233456788999999 788999999999999999876543 44667889999999999999 56789999999
Q ss_pred CeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc-CeeeEEEe-cCc
Q 007229 516 REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG-GVYGVAFM-DDF 593 (612)
Q Consensus 516 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~~-~~~ 593 (612)
.+|++||+.+.+.. ..+.+|.+.|..++|||||+.+|+.+.||+|++|+-++.. +.+..-++..+ .--.|.|. +++
T Consensus 700 ~Ti~lWDl~~~~~~-~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr 777 (1012)
T KOG1445|consen 700 STIELWDLANAKLY-SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGR 777 (1012)
T ss_pred ceeeeeehhhhhhh-heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCc
Confidence 99999999999886 5688899999999999999999999999999999998844 55555443322 33457788 999
Q ss_pred eEEEccCCC----eEEEEEec
Q 007229 594 NVVSSGEDA----CIRVWRLA 610 (612)
Q Consensus 594 ~l~s~~~d~----~i~~w~~~ 610 (612)
+++..|-|. .|.+||.+
T Consensus 778 ~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 778 IVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred EEEEecccccchhhhhhhhhh
Confidence 988877654 46666543
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-30 Score=209.98 Aligned_cols=296 Identities=18% Similarity=0.243 Sum_probs=236.7
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC--CC
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA--DK 257 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg 257 (612)
.+..+.++.....|.++.|+++|.+|++++.|.++++||..+++....+. .+...+..++|......++.++. |.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCCCCC
Confidence 34455566677889999999999999999999999999999999999983 55667888899887777777766 77
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 337 (612)
+|+..++ .+.+.+ +.+.||...|..+..++
T Consensus 81 tIryLsl----~dNkyl----------------------------------------------RYF~GH~~~V~sL~~sP 110 (311)
T KOG1446|consen 81 TIRYLSL----HDNKYL----------------------------------------------RYFPGHKKRVNSLSVSP 110 (311)
T ss_pred ceEEEEe----ecCceE----------------------------------------------EEcCCCCceEEEEEecC
Confidence 8999888 444444 55678999999999996
Q ss_pred cCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCccee
Q 007229 338 ISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDL 417 (612)
Q Consensus 338 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (612)
. ++.+++++.|++|++||++..++.........++.+..+.|-.++++...+.|++||++.-....-.......
T Consensus 111 ~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~----- 184 (311)
T KOG1446|consen 111 K-DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD----- 184 (311)
T ss_pred C-CCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-----
Confidence 5 4899999999999999999888888777677778777778888899888889999999865432111110000
Q ss_pred eecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCc-
Q 007229 418 SLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA- 496 (612)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~- 496 (612)
....+.+.+.|||||++++.++..+.+++.|.-+|.+ ...+..+...
T Consensus 185 ------------------------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~--~~tfs~~~~~~ 232 (311)
T KOG1446|consen 185 ------------------------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV--KSTFSGYPNAG 232 (311)
T ss_pred ------------------------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE--eeeEeeccCCC
Confidence 1234688999999999999999999999999998887 4444444332
Q ss_pred --eEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 497 --ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 497 --i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
-....|+||++++++|+.||+|.+|+++++..+......+.+++.++.|+|.-.++++++ ..+.+|=...
T Consensus 233 ~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 256789999999999999999999999999988554444799999999999877777764 5688886654
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.7e-33 Score=230.19 Aligned_cols=288 Identities=14% Similarity=0.191 Sum_probs=236.0
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
+..+.+|.+.|.+++=+|..-..+++|+.||.|++||+.+.++..+++.|.+.|..+++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4567899999999999999855799999999999999999999999999999999999986 56889999999999997
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEE
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHL 299 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (612)
+. ....++ .....+..+.-+..+..++++++ .|.|||. ....+++++
T Consensus 137 ~~-~p~~ti----lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~----~R~~Pv~sm---------------------- 183 (433)
T KOG0268|consen 137 DG-PPLHTI----LGKSVYLGIDHHRKNSVFATCGE--QIDIWDE----QRDNPVSSM---------------------- 183 (433)
T ss_pred cC-Ccceee----eccccccccccccccccccccCc--eeeeccc----ccCCcccee----------------------
Confidence 65 466666 45566777777777778888875 4999998 444444333
Q ss_pred EEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEee
Q 007229 300 ITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAV 379 (612)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 379 (612)
.-....+.++.|++.....|+++..|+.|.+||++...+.....
T Consensus 184 ------------------------swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------------ 227 (433)
T KOG0268|consen 184 ------------------------SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI------------ 227 (433)
T ss_pred ------------------------ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee------------
Confidence 33456788888887668899999999999999998776544321
Q ss_pred ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc
Q 007229 380 EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA 459 (612)
Q Consensus 380 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 459 (612)
....-+.++|+
T Consensus 228 ---------------------------------------------------------------------~~mRTN~Iswn 238 (433)
T KOG0268|consen 228 ---------------------------------------------------------------------LTMRTNTICWN 238 (433)
T ss_pred ---------------------------------------------------------------------eeccccceecC
Confidence 12235678999
Q ss_pred cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccc
Q 007229 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR 539 (612)
Q Consensus 460 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 539 (612)
|.+-.+.+|++|..++.||++... .+.....+|.+.|.+++|||.|+-+++|+.|.+|+||....+...-.-...-...
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~ 317 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQH 317 (433)
T ss_pred ccccceeeccccccceehhhhhhc-ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhhe
Confidence 988888999999999999998765 3467788999999999999999999999999999999998876542222223457
Q ss_pred eeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 540 INCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 540 i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|.++.||.|.+++++||+|+.|++|....
T Consensus 318 V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999999999999999999998765
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=9.7e-32 Score=232.91 Aligned_cols=209 Identities=19% Similarity=0.235 Sum_probs=165.9
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce----eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
..+.+|+..|+++++.|.|-.+++|+.|.+|++||+..-.. .+.........|.+++|++.|..|++.+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq--- 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ--- 237 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc---
Confidence 34788999999999999999999999999999999986443 22222334558999999999988877776552
Q ss_pred EEEEEecCCce------------eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec-c-----cccc
Q 007229 129 VRAFMWDSGTT------------VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-H-----REHS 190 (612)
Q Consensus 129 i~i~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~-----~~~~ 190 (612)
.++++-+-.+. +..-+||...++|-+|+|+.+..++|++.||++|+||+...+.... + .+..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 34444432221 2234689999999999999988999999999999999876543322 2 2344
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc--cEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG--SIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
-+++.++|++||+++|+|+.||.|.+|+.........+.....|.. .|+++.|++||++|++-+.|+++++||+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 5789999999999999999999999999865544444444557776 9999999999999999999999999999
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.4e-31 Score=223.33 Aligned_cols=287 Identities=13% Similarity=0.123 Sum_probs=239.7
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~ 92 (612)
..+....++++...|....+++|+ +..+.++|...++.+..+.||...|+.+.|+|+...+++++.|-.|+||......
T Consensus 215 H~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 215 HSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred eccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 344556889999999888889988 6799999999999999999999999999999999999999999999999998877
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc--CCceEEEEEEcCCCCEEEEEeecCC
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG--HSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
.......|..+|+.+...|.|.||+++++++ +.-..+..++..+..... ..-.+++.+|+|||- ++.+|..|+
T Consensus 295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~---~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~ 369 (506)
T KOG0289|consen 295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDG---TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDG 369 (506)
T ss_pred -CccccccccccceeeeeccCCcEEEEecCCc---eEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCc
Confidence 4557889999999999999999999999998 455666667877766543 335689999999998 799999999
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.+++||++++.....+.+|+++|..++|+.+|-+|++++.|+.|++||++.-+...++.. ....++.++.|.+.|++|
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--cccccceeEEEcCCCCeE
Confidence 999999999999999999999999999999999999999999999999999888888743 333479999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
+.++.|=.|++++- ...+ ...+..+..|.+..
T Consensus 448 ~~~g~~l~Vy~~~k--~~k~----------------------------------------------W~~~~~~~~~sg~s 479 (506)
T KOG0289|consen 448 GIAGSDLQVYICKK--KTKS----------------------------------------------WTEIKELADHSGLS 479 (506)
T ss_pred EeecceeEEEEEec--cccc----------------------------------------------ceeeehhhhccccc
Confidence 99976644444442 1111 12223444566677
Q ss_pred eEEEEE-ecCCcEEEEEecCCcEEEEEc
Q 007229 331 STLTAL-KISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 331 ~~~~~~-~~~~~~l~~~~~dg~i~~wd~ 357 (612)
+.+.|. . ..++++++.|..++++.+
T Consensus 480 t~v~Fg~~--aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 480 TGVRFGEH--AQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeeccc--ceEEeeccchhheEEeec
Confidence 777777 4 688889999888887743
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-31 Score=227.28 Aligned_cols=315 Identities=17% Similarity=0.286 Sum_probs=244.7
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
.+.+..|..+|+|++++||+++..+++.+++|.-|++.+++......... .|...
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev~k~----------------------- 189 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EVLKS----------------------- 189 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hhhhh-----------------------
Confidence 55678899999999999999999999999999999999987432111110 11000
Q ss_pred EEecCCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 132 FMWDSGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 132 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.+.+...- ++|...+.+++.+||++| |++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....|++++.
T Consensus 190 ----~~~~~k~~r~~h~keil~~avS~Dgky-latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 190 ----HGNPLKESRKGHVKEILTLAVSSDGKY-LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred ----ccCCCCcccccccceeEEEEEcCCCcE-EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec
Confidence 01111111 389999999999999996 999999999999999999999999999999999999988889999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
|+++++|+++....+.++ .+|...|.++....-++.+-+|+.|+++++|++. .
T Consensus 265 Drsvkvw~~~~~s~vetl---yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~----e-------------------- 317 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETL---YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP----E-------------------- 317 (479)
T ss_pred CCceEEEehhHhHHHHHH---hCCccceeeechhcccceEEeccccceeEEEecc----c--------------------
Confidence 999999999988887777 4999999999998888878788899999999982 1
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
.....+.++.+.+.+++|.+ ...+++|+.+|.|.+|++...+++.......
T Consensus 318 ---------------------------esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 318 ---------------------------ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred ---------------------------cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccc
Confidence 11234567888999999998 8999999999999999998877765543100
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
+-+ ........+
T Consensus 369 gv~--------------------------------------------------------------------~~~~~~~~~ 380 (479)
T KOG0299|consen 369 GVI--------------------------------------------------------------------PELDPVNGN 380 (479)
T ss_pred ccc--------------------------------------------------------------------CCccccccc
Confidence 000 000111123
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccCc--ccccceeeccccCceEEEEEcCCCcEEEEE-cCCCeEEEE
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISGN--TLTEEMVLEKHRGAITVIQYSPDVSMFASA-DGNREAIVW 521 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iw 521 (612)
..|++++..|...++|+|+.+|.|++|.+..+ .+.....+. -.+.|++++|+++|+++++| +....+--|
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 47999999999999999999999999999887 222233333 56789999999999966655 333333333
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=232.09 Aligned_cols=288 Identities=19% Similarity=0.317 Sum_probs=233.5
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
+....+..|.+.+..+.|-++.. .|++|+.|..|++|+....+ .+.++.+..++|+++.|.++++++++++.|+.++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 34456778999999999999977 69999999999999987766 6777888999999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+|++...+...++ .+|...|+++.|......+++++.|.++++||+ ....+.++....
T Consensus 245 ~Wnvd~~r~~~TL---sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl----~k~~C~kt~l~~--------------- 302 (459)
T KOG0288|consen 245 LWNVDSLRLRHTL---SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL----QKAYCSKTVLPG--------------- 302 (459)
T ss_pred eeeccchhhhhhh---cccccceeeehhhccccceeeccccchhhhhhh----hhhheecccccc---------------
Confidence 9999999999999 489999999999987767999999999999999 665555443321
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
..+..+... ...+++|-.|+.|++||.++......
T Consensus 303 --------------------------------S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~s---------- 337 (459)
T KOG0288|consen 303 --------------------------------SQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRS---------- 337 (459)
T ss_pred --------------------------------ccccceEec---ceeeeecccccceEEEeccCCceeeE----------
Confidence 122233332 45667777788888887766544332
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
.+..+.|++
T Consensus 338 -----------------------------------------------------------------------v~~gg~vtS 346 (459)
T KOG0288|consen 338 -----------------------------------------------------------------------VPLGGRVTS 346 (459)
T ss_pred -----------------------------------------------------------------------eecCcceee
Confidence 233456999
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeecc--ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK--HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
+..++++..|.+.+.|.++.+.|+++........-.+ .....+.+.|||++.|+|+|+.||.|+||++.++++....-
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec
Confidence 9999999999999999999999999887632222221 12348899999999999999999999999999999875444
Q ss_pred ccccc-ceeEEEecCCCcEEEEeecCcEEEEE
Q 007229 534 LFHTA-RINCLAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 534 ~~~~~-~i~~~~~s~~~~~l~s~~~d~~i~iw 564 (612)
..+.. .|++++|+|.|..|++++.++.+.+|
T Consensus 427 ~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 427 LSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 43443 69999999999999999999999999
No 91
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4e-30 Score=241.26 Aligned_cols=266 Identities=11% Similarity=0.119 Sum_probs=205.1
Q ss_pred eEeeeeeccCCCC--CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC----------cee---eEeccCCCceEEEEE
Q 007229 4 VHLSETYACAPST--ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP----------LHV---EFYGEHGYPVTVARY 67 (612)
Q Consensus 4 ~~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~----------~~~---~~~~~h~~~v~~~~~ 67 (612)
...+.+++..+.. +...|.....++|+..++.++ +.....|+...+ +.. ..+.+|.+.|++++|
T Consensus 4 sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f 83 (493)
T PTZ00421 4 SRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF 83 (493)
T ss_pred ccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE
Confidence 3445566655543 345677777788865555554 444455654333 221 247799999999999
Q ss_pred CC-CCCEEEEeeCcCeEEEeecCCCc------eeeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCce
Q 007229 68 SP-NGEWIASADVSGSVRIWGTHNGF------VLKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTT 139 (612)
Q Consensus 68 s~-d~~~las~~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~ 139 (612)
+| ++++||+|+.|++|++||+.++. .....+.+|...|.+++|+|++ .+|++++.++ .+++|+.++++.
T Consensus 84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg---tVrIWDl~tg~~ 160 (493)
T PTZ00421 84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM---VVNVWDVERGKA 160 (493)
T ss_pred cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC---EEEEEECCCCeE
Confidence 99 89999999999999999997653 1345678999999999999986 6899999888 678888889999
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccc-eEEEEECCCCCeEEEEE----cCCcE
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF-VNCIRFSPDGSKLISVS----SDRKG 214 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~----~dg~i 214 (612)
+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|
T Consensus 161 ~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 999999999999999999999 6999999999999999999998888888765 45678999888887765 47899
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeee
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
++||+++........ .......+....|++++++|++++ .|+.|++||+ .+++......
T Consensus 240 klWDlr~~~~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl----~~~~~~~~~~ 299 (493)
T PTZ00421 240 MLWDTRKMASPYSTV-DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL----MNERLTFCSS 299 (493)
T ss_pred EEEeCCCCCCceeEe-ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe----eCCceEEEee
Confidence 999998765332221 112334566678899999999887 4999999999 6666655443
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=4.6e-31 Score=250.30 Aligned_cols=208 Identities=21% Similarity=0.277 Sum_probs=170.2
Q ss_pred CCceeEEEEccCCCEEEEec---CCEEEEEeCCC------------CceeeEeccCCCceEEEEECCCCCEEEEeeCcCe
Q 007229 18 RGRGILISGNPKTDTILYCN---GRSVLIRYLDK------------PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS 82 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~ 82 (612)
..+|.+++.+|||..+|+|+ |+.++||+.+. ++.+..+..|.+.|+|+.|||||++||+|++|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 44689999999999999998 67888998641 3455667889999999999999999999999999
Q ss_pred EEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEE
Q 007229 83 VRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 83 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
|.||...... . ..+. ++.++ ..+.+..+....+.+|...|..++|+|++. +
T Consensus 93 v~iW~~~~~~-~-----------~~~f----------gs~g~------~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~ 143 (942)
T KOG0973|consen 93 VMIWERAEIG-S-----------GTVF----------GSTGG------AKNVESWKVVSILRGHDSDVLDVNWSPDDS-L 143 (942)
T ss_pred EEEeeecccC-C-----------cccc----------ccccc------ccccceeeEEEEEecCCCccceeccCCCcc-E
Confidence 9999887510 0 0111 11111 234445577888999999999999999999 5
Q ss_pred EEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC---CccccEE
Q 007229 163 IATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---GHHGSIY 239 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~ 239 (612)
+++++.|++|.+||..+++.+..+++|...|..+.|.|-|+|+++-+.|++|+||++.+-.....+..+. .....+.
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999999999999999999999999999999999987766665553211 2334578
Q ss_pred EEEEecCCCEEEEEe
Q 007229 240 AVSWSPDGKKVLTVS 254 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~ 254 (612)
.+.|+|||++|++.-
T Consensus 224 RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPN 238 (942)
T ss_pred ecccCCCcCeecchh
Confidence 899999999999864
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=9.3e-31 Score=245.39 Aligned_cols=279 Identities=22% Similarity=0.329 Sum_probs=250.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
|...+.+..|. ..++++++.|++|++||..++..+...+.+|.+.|.+++|..-+.+|++++.|. .+++|+..+|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~---t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK---TERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCC---cEEeEecCCC
Confidence 67788899998 558999999999999999999977767999999999999998888999999888 5789998899
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
++.+.+.+|...|.++...+. .+++|+.|.+|++|+++++..+..+.+|.++|.++..+ +.++++|+.|++|++|
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVW 356 (537)
T ss_pred cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEE
Confidence 999999999999999998776 69999999999999999999999999999999999998 7899999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC-eeEeeeeccCccccceeeeeeeccC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG-RVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+.+++++..+ .+|...|+++.+.+. ..+++|+.|++|++||+ .+. +++
T Consensus 357 ~~~~~~cl~sl---~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl----~~~~~c~---------------------- 406 (537)
T KOG0274|consen 357 DPRTGKCLKSL---SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL----RTKRKCI---------------------- 406 (537)
T ss_pred Ehhhceeeeee---cCCcceEEEEEecCc-ceEEeeeeccceEeecC----Cchhhhh----------------------
Confidence 99999999999 489999999988765 88999999999999999 555 343
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-cccceEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-YDARIKC 375 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~ 375 (612)
..+.+|..-+..+.+. ++.+++++.|+.|++||...+++...... +...+.+
T Consensus 407 ------------------------~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~ 459 (537)
T KOG0274|consen 407 ------------------------HTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSA 459 (537)
T ss_pred ------------------------hhhcCCcccccccccc---cceeEeccccccEEEeecccCceeeeeccCCcccEEE
Confidence 4455666666666555 68999999999999999999999998877 6788888
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCC
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
++.....+++++.++.+++||++++...
T Consensus 460 l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 460 LALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eecCcceEEEEecCCeeEEEecccCchh
Confidence 8888899999999999999999988865
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.6e-31 Score=230.31 Aligned_cols=312 Identities=18% Similarity=0.223 Sum_probs=235.5
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe----eeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK----IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
+.....+++|+..|.++++.|.|..+++|+.|.+|++||+..... ...+ .......|.++.|++.|..|++.+.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l--~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL--QPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhcc--CcccccccceeeecCCCCeEEEEec
Confidence 334445788999999999999999999999999999999875332 2222 2244568999999999999999998
Q ss_pred CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEE
Q 007229 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTA 335 (612)
Q Consensus 256 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (612)
....+++|- ...+.+...... -+|-| +....||...+++.+|
T Consensus 235 ~aqakl~DR----dG~~~~e~~KGD---------------------------QYI~D-------m~nTKGHia~lt~g~w 276 (641)
T KOG0772|consen 235 SAQAKLLDR----DGFEIVEFSKGD---------------------------QYIRD-------MYNTKGHIAELTCGCW 276 (641)
T ss_pred CcceeEEcc----CCceeeeeeccc---------------------------hhhhh-------hhccCCceeeeecccc
Confidence 899999996 333333322221 12222 2345689999999999
Q ss_pred EecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcc
Q 007229 336 LKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPL 415 (612)
Q Consensus 336 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (612)
++.....+++++.||++++||+...+...... ......
T Consensus 277 hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi----------------------------k~k~~~-------------- 314 (641)
T KOG0772|consen 277 HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI----------------------------KTKPAG-------------- 314 (641)
T ss_pred ccCcccceEEecCCCcEEEEecCCchhheeEE----------------------------eeccCC--------------
Confidence 97779999999999999999987654321110 000000
Q ss_pred eeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccc-ceeecccc
Q 007229 416 DLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTE-EMVLEKHR 494 (612)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~ 494 (612)
...-++++++|+||++++|+|+.||.|.+|+..+....+ ...-.+|.
T Consensus 315 --------------------------------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 315 --------------------------------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred --------------------------------CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 012258899999999999999999999999985543322 23345677
Q ss_pred C--ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc--cccceeEEEecCCCcEEEEeec------CcEEEEE
Q 007229 495 G--AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF--HTARINCLAWSPSSTMVATGSI------DTCVIIY 564 (612)
Q Consensus 495 ~--~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~------d~~i~iw 564 (612)
. .|+++.||+||++|++-+.|+++++||++..+..+....+ ..-+-+.++|||+.++|++|.. .|.+.+|
T Consensus 363 ~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 363 PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 7 8999999999999999999999999999987764443332 2345678999999999999863 5689999
Q ss_pred EccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEE
Q 007229 565 EIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVW 607 (612)
Q Consensus 565 d~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w 607 (612)
|..+ . +.+..+.-....|..+.|+ .-+.|+.++.||.+++|
T Consensus 443 d~~t-~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 443 DRMT-L-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eccc-e-eeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 9887 5 6666666667789999999 66778889999999986
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=226.21 Aligned_cols=284 Identities=19% Similarity=0.292 Sum_probs=219.1
Q ss_pred eecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 183 KLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
+..+.+|.+.|.+++=+|.. ..+++|+.||.|++||+....+...+ ..|.+.|..+++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f---~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF---KAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee---ecccCceeeEEecc--cceEEecCCcceee
Confidence 34567999999999999987 78999999999999999999999998 49999999999986 56889999999999
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
|.+ + +.++.++.... .+..+.-+ ..++
T Consensus 134 wk~----~-~~p~~tilg~s-----------------------------------------------~~~gIdh~-~~~~ 160 (433)
T KOG0268|consen 134 WKI----D-GPPLHTILGKS-----------------------------------------------VYLGIDHH-RKNS 160 (433)
T ss_pred eec----c-CCcceeeeccc-----------------------------------------------cccccccc-cccc
Confidence 998 2 23443333221 12222222 1156
Q ss_pred EEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecC
Q 007229 342 TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421 (612)
Q Consensus 342 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (612)
.++++++ .|.+||.....+.. .+.+
T Consensus 161 ~FaTcGe--~i~IWD~~R~~Pv~----------smsw------------------------------------------- 185 (433)
T KOG0268|consen 161 VFATCGE--QIDIWDEQRDNPVS----------SMSW------------------------------------------- 185 (433)
T ss_pred cccccCc--eeeecccccCCccc----------eeec-------------------------------------------
Confidence 6777764 47888876433222 2211
Q ss_pred CCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC-CeEEEEecCCeEEEEEccCcccccceeeccccCceEEE
Q 007229 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG-SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVI 500 (612)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~ 500 (612)
....|.++.|+|-. ..|+++.+|+.|.+||++.+.+.....+.- .-+.|
T Consensus 186 ---------------------------G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~I 235 (433)
T KOG0268|consen 186 ---------------------------GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM---RTNTI 235 (433)
T ss_pred ---------------------------CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec---cccce
Confidence 01247889999954 567777899999999999988754444433 45678
Q ss_pred EEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccc
Q 007229 501 QYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH 580 (612)
Q Consensus 501 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h 580 (612)
+|+|.+--+++|++|..++.||++..........+|.+.|.++.|||.|+-+++||.|.+|+||.+..+. ..-.-...-
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRdiYhtkR 314 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRDIYHTKR 314 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc-chhhhhHhh
Confidence 9999888899999999999999999888778889999999999999999999999999999999998733 221111222
Q ss_pred ccCeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 581 LGGVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 581 ~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
...|.++.|| |.+++++||+|+.|++|.-.
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 3469999999 99999999999999999853
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-30 Score=204.84 Aligned_cols=285 Identities=19% Similarity=0.268 Sum_probs=231.0
Q ss_pred CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
.+|.+.+.+++|+.+|..|++++.|+++.+|++ +..+....
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~----e~~r~~~~----------------------------------- 57 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNL----ERDRFRKE----------------------------------- 57 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEe----cchhhhhh-----------------------------------
Confidence 478899999999999999999999999999999 44432221
Q ss_pred EcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE-EEEeeccEEEEecCCC
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK-CLAAVEEVIFTAGFDN 390 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~~~ 390 (612)
...++|.+.|..+++.+.....+++++.|..|++||.+.+++........+.+. +-.+++++++.++.|.
T Consensus 58 ---------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD 128 (313)
T KOG1407|consen 58 ---------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD 128 (313)
T ss_pred ---------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc
Confidence 235679999999999977799999999999999999999988776554333333 3333777788888887
Q ss_pred eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec
Q 007229 391 KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ 470 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 470 (612)
.|...|.++.+ .....+.+..+..++|+.++.+++....
T Consensus 129 ~it~id~r~~~-----------------------------------------~~~~~~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 129 RITFIDARTYK-----------------------------------------IVNEEQFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred cEEEEEecccc-----------------------------------------eeehhcccceeeeeeecCCCCEEEEecC
Confidence 77777776554 3344445667888999988888888888
Q ss_pred CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCc
Q 007229 471 NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 471 dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 550 (612)
.|.|.|......+. +..+++|.....|+.|+|+|+++|+|+.|-.+.+||++..-++ ..+..+.-+|..+.||.||+
T Consensus 168 lG~v~ILsypsLkp--v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~-R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 168 LGCVEILSYPSLKP--VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE-RCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred CceEEEEecccccc--ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh-eeeccccCceEEEEeccCcc
Confidence 89999999986555 8899999999999999999999999999999999999988776 55666899999999999999
Q ss_pred EEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCce-EEEccCC---------CeEEEEEecc
Q 007229 551 MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGED---------ACIRVWRLAT 611 (612)
Q Consensus 551 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d---------~~i~~w~~~~ 611 (612)
+||+|++|..|-|=++++ + ..+...+ +.++-..++|.|.+. |+-++.| |.|+++-+.+
T Consensus 245 ~lASaSEDh~IDIA~vet-G-d~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVET-G-DRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred eeeccCccceEEeEeccc-C-CeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999999999999999999 5 4555444 778899999995555 4444432 6788887654
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=245.46 Aligned_cols=304 Identities=19% Similarity=0.249 Sum_probs=213.9
Q ss_pred eeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe--cCCCEEEEEeCCCcE
Q 007229 183 KLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS--PDGKKVLTVSADKSA 259 (612)
Q Consensus 183 ~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~dg~i 259 (612)
.+.+. .|.+.|.+|.||+||+|||+|+.|+.|+||.+...+.. .. +...-.++.+. .++..-.+....+.+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~-----~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RV-----AEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cc-----cccccchhhhhhhhccccCccccccccc
Confidence 34455 89999999999999999999999999999998764431 11 11111111111 111100011111000
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
.=-... .+........ .+ -.....-..+++..+.||.+.|..+.|+.
T Consensus 333 ~~~~s~--~~~~~~s~~~---------------~~--------------p~~~f~f~ekP~~ef~GHt~DILDlSWSK-- 379 (712)
T KOG0283|consen 333 SSRTSS--SRKGSQSPCV---------------LL--------------PLKAFVFSEKPFCEFKGHTADILDLSWSK-- 379 (712)
T ss_pred cccccc--cccccCCccc---------------cC--------------CCccccccccchhhhhccchhheeccccc--
Confidence 000000 0000000000 00 00000123567788999999999999998
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcce
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLD 416 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 416 (612)
.++|++++.|.++++|++....++..+. |..-|+|++| +++++++|+-|+++++|++...+..
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv------------- 445 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV------------- 445 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-------------
Confidence 8999999999999999999999999988 9999999999 8899999999999999999765522
Q ss_pred eeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc---
Q 007229 417 LSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH--- 493 (612)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--- 493 (612)
.| .+...-|++++|+|||++.++|+-+|.+++|+....++.....+..|
T Consensus 446 --------------------~W--------~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 446 --------------------DW--------NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred --------------------ee--------hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 22 22335699999999999999999999999999998876433333322
Q ss_pred ---cCceEEEEEcCC-CcEEEEEcCCCeEEEEecCCcceeeecccccc--cceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 494 ---RGAITVIQYSPD-VSMFASADGNREAIVWDRVSKEVKLNNMLFHT--ARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 494 ---~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
...|+.++|.|. ...+++.+.|..|||+|.+...++. .+.++. ..-....|+.||++|+++++|..|++|+++
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~-KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH-KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh-hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 237999999984 3457777899999999998877763 344432 223467899999999999999999999985
Q ss_pred C
Q 007229 568 K 568 (612)
Q Consensus 568 ~ 568 (612)
.
T Consensus 577 ~ 577 (712)
T KOG0283|consen 577 S 577 (712)
T ss_pred C
Confidence 4
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-30 Score=233.57 Aligned_cols=277 Identities=18% Similarity=0.302 Sum_probs=234.1
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~ 100 (612)
.+-++|| ..+.+|++.+..|++|+..++.......-++..|+++.|+++|++||+|..+|.|.|||..+.+.+. .+.+
T Consensus 180 ~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~-~~~~ 257 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR-TLRG 257 (484)
T ss_pred hhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-cccC
Confidence 3457788 5668999999999999999999777666669999999999999999999999999999999988554 5555
Q ss_pred -cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 101 -LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 101 -~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
|...|-+++|. +..+.+++.++ .|..++....+.... +.+|...|..+.|++|+. .+|+|+.|+.+.|||..
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~---~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDG---KILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGL 331 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCC---cEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCC
Confidence 99999999998 55677777766 355566655444433 899999999999999999 59999999999999998
Q ss_pred CCeeeecccccccceEEEEECC-CCCeEEEEE--cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-
Q 007229 179 PFKFKLSHREHSNFVNCIRFSP-DGSKLISVS--SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS- 254 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~- 254 (612)
..+.+..+..|.+.|.+++|+| ....||+|+ .|+.|++||..+++.+..+ .....|.++.|++..+.|+++.
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceeeEEEcCCCCEEEEecC
Confidence 8889999999999999999999 456888865 4999999999999999999 7888999999999987777653
Q ss_pred -CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 255 -ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 255 -~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
.++.|.||+. .+.. ....+.+|...|..+
T Consensus 408 ~s~n~i~lw~~----ps~~----------------------------------------------~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 408 YSENQITLWKY----PSMK----------------------------------------------LVAELLGHTSRVLYL 437 (484)
T ss_pred CCCCcEEEEec----cccc----------------------------------------------eeeeecCCcceeEEE
Confidence 4678999998 4322 235667899999999
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
++++. +..+++|+.|.++++|++-..
T Consensus 438 a~SPd-g~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 438 ALSPD-GETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EECCC-CCEEEEecccCcEEeccccCC
Confidence 99842 899999999999999987654
No 99
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=3.3e-29 Score=223.11 Aligned_cols=230 Identities=17% Similarity=0.247 Sum_probs=163.8
Q ss_pred CCCEEEEec---CCEEEEEeCCC-C---ceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCce--e---e
Q 007229 29 KTDTILYCN---GRSVLIRYLDK-P---LHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFV--L---K 95 (612)
Q Consensus 29 d~~~l~~~~---~~~i~i~~~~~-~---~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~--~---~ 95 (612)
.+.++|+-. ++.+-|.-+.. | +.+..+.+|...|+.+.||| +..+||+++.|..|+||.+..+-. + .
T Consensus 42 S~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 42 SADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ccceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 344555554 45666666542 2 34556789999999999999 567899999999999999984422 1 1
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
..+.+.+-.+.++.|+|...-|++.+..+ .+.||+..+++.+..+.+|.+.|.++.|+.||. ++++.+.|+.|+||
T Consensus 122 ~~~g~~~~~vE~l~fHpTaDgil~s~a~g---~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~-llatscKdkqirif 197 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPTADGILASGAHG---SVYITDISTQKTAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIF 197 (1012)
T ss_pred eeecCCceEEEEeecccCcCceEEeccCc---eEEEEEcccCceeecccCCchhhhccccccCCc-eEeeecCCcceEEe
Confidence 12233344788999999776666655555 467778889999999999999999999999999 79999999999999
Q ss_pred eCCC-Ceeeecccccccc-eEEEEECCCCCeEEEEEcC----CcEEEEecCCC-CeeeeeeccCCccccEEEEEEecCCC
Q 007229 176 EGPP-FKFKLSHREHSNF-VNCIRFSPDGSKLISVSSD----RKGLIYDGKSG-EKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 176 d~~~-~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
|.+. ++.++...+|.+- =..+.|.-+-..|++.+.+ ..+++||.... ..+.++.. ...-.+.---|.||.+
T Consensus 198 DPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel--d~stGvLiPl~DpDt~ 275 (1012)
T KOG1445|consen 198 DPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL--DSSTGVLIPLYDPDTR 275 (1012)
T ss_pred CCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEe--ecccceEeeeecCCCc
Confidence 9764 5667777778652 3346677555577776654 67899998653 23333311 3344566667888888
Q ss_pred EEEEEe-CCCcEEEEEe
Q 007229 249 KVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 249 ~l~~~~-~dg~i~iw~~ 264 (612)
+|+.++ .+.++..+.+
T Consensus 276 llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 276 LLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred eEEEecCCcceEEEEEe
Confidence 766554 3556666665
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.3e-30 Score=241.74 Aligned_cols=279 Identities=14% Similarity=0.192 Sum_probs=240.7
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeE-eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+.+..|. ..++++++ ++.|.+||..++..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..++++ .
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-~ 284 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-T 284 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-E
Confidence 4567778888 44566665 78999999999999888 999999999999998888999999999999999999994 5
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
..+.+|...+.++...+ .++++++.|. .+++|.++++..+..+.+|.++|.++..+ ++ ++++|+.|++|++|
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~---tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDN---TVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVW 356 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCc---eEEEEeccCcceEEEeccccccEEEEEec--CC-EEEEEecCceEEEE
Confidence 58889999999988754 4677777777 68999999999999999999999999999 44 69999999999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC-CeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG-EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
|..+++++.++.+|...|.++.+.+. +++++|+.|++|++||+++. +++..+ .+|..-+..+.+ .+++|++++
T Consensus 357 ~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl---~~h~~~v~~l~~--~~~~Lvs~~ 430 (537)
T KOG0274|consen 357 DPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL---QGHTSLVSSLLL--RDNFLVSSS 430 (537)
T ss_pred EhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh---cCCccccccccc--ccceeEecc
Confidence 99999999999999999999988765 89999999999999999999 888888 478877766655 478899999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
.|++|++||. .++++++.+... ....+..+......+++++.++.+.+||++.......
T Consensus 431 aD~~Ik~WD~----~~~~~~~~~~~~----~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 431 ADGTIKLWDA----EEGECLRTLEGR----HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred ccccEEEeec----ccCceeeeeccC----CcccEEEeecCcceEEEEecCCeeEEEecccCchhhh
Confidence 9999999999 999999998875 1234445555579999999999999999887654433
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.5e-29 Score=192.56 Aligned_cols=289 Identities=19% Similarity=0.257 Sum_probs=225.8
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCC------CC----ce-----eeEeccCCCceEEEEECCCCCEEEEeeC
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLD------KP----LH-----VEFYGEHGYPVTVARYSPNGEWIASADV 79 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~------~~----~~-----~~~~~~h~~~v~~~~~s~d~~~las~~~ 79 (612)
+....|.+++|+|.|.+.|+++ ..+.+|--.. .+ ++ .+.-+.|.+.|.|.+|||+|++||+|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 3455789999999999999999 4666654321 11 11 1223468999999999999999999999
Q ss_pred cCeEEEeecCCCce----eeeeeeecCCCeEEEEECCC----CCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEE
Q 007229 80 SGSVRIWGTHNGFV----LKNEFKVLSGRIDDLQWSPD----GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVL 151 (612)
Q Consensus 80 d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~ 151 (612)
|.+|++--+....+ ...++.-|.+.|..++|..+ |..|++++.+... |.+-+-..|+..+.+.+|++.|.
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~--iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK--IYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce--EEEeecCCCCcceeecCCcccEE
Confidence 99999976654332 23467889999999999653 5677887776643 44445558999999999999998
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
++- +-++- ++++|+.|.+|++||++-..++.++.. .+..|.+++..|.|++|++|-.|....+||++.++.
T Consensus 188 aly-swn~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 188 ALY-SWNGA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEE-EecCc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 873 22333 899999999999999998887776532 235799999999999999999999999999999999
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (612)
++.+ ..|...|.++.|+|...++++++.|..|++-|+ .+.+.+.+
T Consensus 266 iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdl-----qgdla~el--------------------------- 310 (350)
T KOG0641|consen 266 IQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL-----QGDLAHEL--------------------------- 310 (350)
T ss_pred eeee---CCCccceeEEEeCCCceEEEEecccceEEEeec-----ccchhhcC---------------------------
Confidence 9999 489999999999999999999999999999998 23322221
Q ss_pred CCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
+......|...+..+.|.+. .-.+++.+.|.++.+|-+.
T Consensus 311 --------------~~~vv~ehkdk~i~~rwh~~-d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 --------------PIMVVAEHKDKAIQCRWHPQ-DFSFISSSADKTATLWALN 349 (350)
T ss_pred --------------ceEEEEeccCceEEEEecCc-cceeeeccCcceEEEeccC
Confidence 22334457788888888842 4567788889999998653
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-31 Score=237.55 Aligned_cols=355 Identities=17% Similarity=0.241 Sum_probs=270.4
Q ss_pred CCCceE---EEEEC-CCCCEEEEeeCcCeEEEeecCCCce-----eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 58 HGYPVT---VARYS-PNGEWIASADVSGSVRIWGTHNGFV-----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 58 h~~~v~---~~~~s-~d~~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
|...|. ++..+ |.++||.||+.||.|++|++..... -...+..|...|+.++...+++.|++++.|. .
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt---T 96 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT---T 96 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc---e
Confidence 444454 44444 4677899999999999999875443 2456788999999999999999999999998 5
Q ss_pred EEEEEecCC--ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee--ee--------ccc-ccccceEE
Q 007229 129 VRAFMWDSG--TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF--KL--------SHR-EHSNFVNC 195 (612)
Q Consensus 129 i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~--------~~~-~~~~~v~~ 195 (612)
+.+|....+ -++.++..|.+.|.|++.-...+.++|+|+-|+.|.+||+.++.. +. .+. ++..+|++
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 677777655 578889999999999999444444899999999999999997732 21 233 78889999
Q ss_pred EEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEe
Q 007229 196 IRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 275 (612)
++.++.|..+++|+..+.+++||.++++.+..+ .+|...|..+..++||+.+++++.||+|++||+ ...+++.
T Consensus 177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkL---rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL----gqQrCl~ 249 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL---RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL----GQQRCLA 249 (735)
T ss_pred eecCCcceEEEecCcccceEEeccccccceeee---eccccceEEEEEcCCCCeEeecCCCceEEeeec----cccceee
Confidence 999999999999999999999999999999998 499999999999999999999999999999999 6666665
Q ss_pred eeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEE
Q 007229 276 TFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 355 (612)
++. .|...|+++..+ +.-..+++|+.||.|..=
T Consensus 250 T~~----------------------------------------------vH~e~VWaL~~~-~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 250 TYI----------------------------------------------VHKEGVWALQSS-PSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred eEE----------------------------------------------eccCceEEEeeC-CCcceEEecCCCCcEEec
Confidence 543 466677777766 226899999999999999
Q ss_pred EcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeec
Q 007229 356 IRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES 433 (612)
Q Consensus 356 d~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (612)
|+++.......-..+.+|..+.. +.+.+.+++.|+.|+.|...-.
T Consensus 283 dl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~--------------------------------- 329 (735)
T KOG0308|consen 283 DLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD--------------------------------- 329 (735)
T ss_pred ccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc---------------------------------
Confidence 99986554444447777777777 3556688889999998875422
Q ss_pred cEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc
Q 007229 434 GVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD 513 (612)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (612)
..+++.+++.+ -+.+....+++..... ....++ ..+|..-+.-.|.+.+++-.
T Consensus 330 ----------------------~~l~~s~~~~~-~~T~~~~~~~~~~~tp---~~vi~G-g~ai~k~~mL~dkRhVlTkD 382 (735)
T KOG0308|consen 330 ----------------------IALSVSGDLDF-FSTDSNNHSCDLTNTP---DSVIPG-GAAIKKHAMLNDKRHVLTKD 382 (735)
T ss_pred ----------------------cccccCCCCCc-ccccCCCccccccCCC---ceeccC-chhhhhhhhhcCcceEeeec
Confidence 23444454444 3334444444432211 122222 22355555566888888888
Q ss_pred CCCeEEEEecCCccee
Q 007229 514 GNREAIVWDRVSKEVK 529 (612)
Q Consensus 514 ~d~~i~iwd~~~~~~~ 529 (612)
..|.+.+||+-....+
T Consensus 383 a~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 383 AKGNVALWDILACVKV 398 (735)
T ss_pred CCCCEEEEEeeeeeeh
Confidence 8889999988766553
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.3e-30 Score=232.67 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=215.5
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEecc-CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGE-HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
++.|+++.|+++|++||+|. +|.|.|||.++.+.++.+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 67999999999999999998 89999999999999999998 99999999999 6689999999999999999888766
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee--cCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG--EDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~ 173 (612)
..+.+|...|..+.|++|+++||+++.|+ .+.||+.....++..+..|...|.+++|+|-...+||+|+ .|+.|+
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN---~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDN---VVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCcc---ceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 56889999999999999999999999998 4566666678899999999999999999998777899975 589999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEE--EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV--SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
+||..++..+..+. ....|..|.|++..+.|+++ ..++.|.||+..+.+.+..+ .+|...|..++++|||..++
T Consensus 372 fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l---~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 372 FWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL---LGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee---cCCcceeEEEEECCCCCEEE
Confidence 99999999888764 45679999999998777664 34778999999998888888 49999999999999999999
Q ss_pred EEeCCCcEEEEEe
Q 007229 252 TVSADKSAKVWEI 264 (612)
Q Consensus 252 ~~~~dg~i~iw~~ 264 (612)
+++.|.++++|++
T Consensus 448 t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 448 TGAADETLRFWNL 460 (484)
T ss_pred EecccCcEEeccc
Confidence 9999999999998
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.4e-28 Score=190.29 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=222.6
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC------CCe---------eeecccccccceEEEEECCCCCeEEEEEc
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP------PFK---------FKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~------~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
....|.+++|+|.|. +.+.|+..+++++-... .+. ..+.-+.|.+.|.|.+|+|+|+++++|+.
T Consensus 31 dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 456789999999999 69999999999987422 111 11223568899999999999999999999
Q ss_pred CCcEEEEecCCCCeee--eeeccCCccccEEEEEEecC----CCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCcc
Q 007229 211 DRKGLIYDGKSGEKIG--EFSSEDGHHGSIYAVSWSPD----GKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSN 283 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~i~~~~~----~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 283 (612)
|.+|++...+...+.. .-.....|.+.|..++|..+ +..|++++. |..|.+-|. ..+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc----~~g------------ 173 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC----GRG------------ 173 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec----CCC------------
Confidence 9999987655432221 11112378999999999764 445555542 334444444 333
Q ss_pred ccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 284 AVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
.....+.+|.+.|.++-.-+ +-++++|+.|.+|++||++-+.++
T Consensus 174 ----------------------------------~~~~a~sghtghilalyswn--~~m~~sgsqdktirfwdlrv~~~v 217 (350)
T KOG0641|consen 174 ----------------------------------QGFHALSGHTGHILALYSWN--GAMFASGSQDKTIRFWDLRVNSCV 217 (350)
T ss_pred ----------------------------------CcceeecCCcccEEEEEEec--CcEEEccCCCceEEEEeeecccee
Confidence 23455677888887775446 899999999999999999877665
Q ss_pred eecee--cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecc
Q 007229 364 KLEKK--YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441 (612)
Q Consensus 364 ~~~~~--~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
..... |....
T Consensus 218 ~~l~~~~~~~gl-------------------------------------------------------------------- 229 (350)
T KOG0641|consen 218 NTLDNDFHDGGL-------------------------------------------------------------------- 229 (350)
T ss_pred eeccCcccCCCc--------------------------------------------------------------------
Confidence 54431 00000
Q ss_pred cceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEE
Q 007229 442 KVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 442 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
....|.++++.|.|++|++|-.|....+||++.+++ +..+..|+..|.++.|||...+|.+++.|..|++-
T Consensus 230 -------essavaav~vdpsgrll~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 230 -------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred -------ccceeEEEEECCCcceeeeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccceEEEe
Confidence 124688999999999999999999999999999988 78899999999999999999999999999999999
Q ss_pred ecCCcc---eeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 522 DRVSKE---VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 522 d~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
|++..- +.......|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 987532 2223445588999999999998889999999999999764
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=211.66 Aligned_cols=339 Identities=19% Similarity=0.297 Sum_probs=258.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
.+++.-.+++++ .++...+.||.+.|..++-......+.+++.|.+.+||.+++|.++..+ .+|.+.|.++
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y---~GH~GSVNsi 196 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY---TGHTGSVNSI 196 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee---cccccceeeE
Confidence 366666666643 3455678899999999998887788999999999999999999999999 4999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecCCCCCeeE--eeeeccCccccceeeeeeeccCCEEEEE--EcCCEEEEEEcCCCC
Q 007229 242 SWSPDGKKVLTVSADKSAKVWEILEDGSGGRVI--KTFASSTSNAVEDMLVGCLWQNDHLITV--SLGGIISIFSASNLD 317 (612)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~ 317 (612)
.|++.+.++++++.|++-.||...-+-+..... ........ .+ +.-..+....+ ..|| ..-.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE--~e-----~sDe~~~d~d~~~~sD~-------~tiR 262 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE--EE-----HSDEHNRDTDSSEKSDG-------HTIR 262 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh--hh-----cccccccccccccccCC-------ceee
Confidence 999999999999999999999841100111100 00000000 00 00000000000 0000 1112
Q ss_pred CCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 318 KAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
.++..+.+|...|.+..|. . ++.+++++.|.+-.+||++++..+..+.+|+.
T Consensus 263 vPl~~ltgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~------------------------- 315 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETGEVVNILTGHDS------------------------- 315 (481)
T ss_pred eeeeeeeccccceEehhhhcC--cceeeeeeccccceeeeeccCceeccccCcch-------------------------
Confidence 3456788999999999988 5 88999999999999999999887776554433
Q ss_pred cCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEE
Q 007229 397 LCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHI 476 (612)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 476 (612)
..+-++-+|..+++++.+.|.+.++
T Consensus 316 -------------------------------------------------------ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 316 -------------------------------------------------------ELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred -------------------------------------------------------hccccccCCcceEEEEeccCceeEe
Confidence 4566778899999999999999999
Q ss_pred EEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee
Q 007229 477 YSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 477 ~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
||++ ..+.....+++|...|++..|..|. .+++|+.|.+|++||+++.......+. ..++++.++.+..++.+|.--
T Consensus 341 WDFR-eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 341 WDFR-EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred ccch-hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEecc
Confidence 9998 4445678899999999999998765 678999999999999999877655555 678999999999888999999
Q ss_pred cCcEEEEEEccCCCcceee-----eecccccCeeeEEEe---cCceEEEccCCCeEEEEEecc
Q 007229 557 IDTCVIIYEIGKPASSRIT-----IKNAHLGGVYGVAFM---DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 557 ~d~~i~iwd~~~~~~~~~~-----~~~~h~~~v~~~~~~---~~~~l~s~~~d~~i~~w~~~~ 611 (612)
++..|++||+.. ..+. .-++|...|.+++|. +-..|+++|-|..+.-|++.+
T Consensus 418 DNRqvRlfDlnG---~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 418 DNRQVRLFDLNG---NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCceEEEEecCC---CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 999999999986 3333 345899999999999 334599999999999999864
No 106
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=5.1e-29 Score=233.85 Aligned_cols=286 Identities=15% Similarity=0.140 Sum_probs=211.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee------------eeeeeecCCCeEEEEECC-CCCEEEEEeCCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL------------KNEFKVLSGRIDDLQWSP-DGLRIVACGDGK 124 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~ 124 (612)
|-..|.....++|+..+++++.+.....|+...+..+ ...+.+|.+.|.+++|+| ++++|++++.++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4456777778888777777777777777776544221 124678999999999999 889999999998
Q ss_pred CeeeEEEEEecCC-------ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEE
Q 007229 125 GKSFVRAFMWDSG-------TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIR 197 (612)
Q Consensus 125 ~~~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 197 (612)
.|++|+..++ +++..+.+|...|.+++|+|++..+|++++.|++|++||+.+++....+.+|...|.+++
T Consensus 99 ---tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 99 ---TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred ---EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 5777777643 357789999999999999998754799999999999999999999989999999999999
Q ss_pred ECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc-EEEEEEecCCCEEEEEe----CCCcEEEEEeecCCCCCe
Q 007229 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS-IYAVSWSPDGKKVLTVS----ADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 198 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~ 272 (612)
|+|++++|++++.|+.|++||+++++.+..+. +|.+. ...+.|.+++..+++++ .|+.|++||+ ....
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl----r~~~ 248 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT----RKMA 248 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC----CCCC
Confidence 99999999999999999999999999887773 56543 45678898888887765 4789999998 3322
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEe-cCCc
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSS-YDGA 351 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~ 351 (612)
.. ......+......+.+.+.+++++++++ .|+.
T Consensus 249 ~p---------------------------------------------~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 249 SP---------------------------------------------YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred Cc---------------------------------------------eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 11 0111112222222333334477888777 5999
Q ss_pred EEEEEcCCceeeeecee-cccceEEEEeeccEEEEecCCCeEEEEecC
Q 007229 352 IIKWIRGVGYSSKLEKK-YDARIKCLAAVEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~ 398 (612)
|++||+..+........ ...++..+++..++.+-.......+++.+.
T Consensus 284 Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 284 IRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALT 331 (493)
T ss_pred EEEEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEEec
Confidence 99999998876654332 445666777755544444444444555554
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-30 Score=209.10 Aligned_cols=296 Identities=18% Similarity=0.268 Sum_probs=248.6
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
+.+.+.+|+.+|..++-......+.+++.+. .-.||..++++++..+.||.+.|.++.|++.+. ++++++.|++..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADh---TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taH 215 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADH---TARIWSLESGACLATYTGHTGSVNSIKFHNSGL-LLLTASGDETAH 215 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeeccccc---ceeEEeeccccceeeecccccceeeEEeccccc-eEEEccCCcchH
Confidence 6678889999999999887777888888887 458999999999999999999999999999998 799999999999
Q ss_pred EEe------CCC----------------------------------CeeeecccccccceEEEEECCCCCeEEEEEcCCc
Q 007229 174 FYE------GPP----------------------------------FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 174 ~wd------~~~----------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
||. ... ..++..+.+|...|.+..|...|+.+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 995 110 1123457789999999999999999999999999
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
..+||+++|+.+..+ .+|....+.++-+|..+++++.+.|.+.++||+ .
T Consensus 296 AnlwDVEtge~v~~L---tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF----R------------------------ 344 (481)
T KOG0300|consen 296 ANLWDVETGEVVNIL---TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF----R------------------------ 344 (481)
T ss_pred ceeeeeccCceeccc---cCcchhccccccCCcceEEEEeccCceeEeccc----h------------------------
Confidence 999999999999988 499999999999999999999999999999998 2
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
..-..+..++||...|++..|.. +..+++|+.|.+|++||+++...
T Consensus 345 ---------------------eaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRs----------- 390 (481)
T KOG0300|consen 345 ---------------------EAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRS----------- 390 (481)
T ss_pred ---------------------hhcceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccccC-----------
Confidence 11122456789999999999997 78899999999999999876542
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceE
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTV 453 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 453 (612)
.+.++....++
T Consensus 391 ---------------------------------------------------------------------plATIRtdS~~ 401 (481)
T KOG0300|consen 391 ---------------------------------------------------------------------PLATIRTDSPA 401 (481)
T ss_pred ---------------------------------------------------------------------cceeeecCCcc
Confidence 22233344568
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccCccccc--ceeeccccCceEEEEEcCCC--cEEEEEcCCCeEEEEecCCcc
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISGNTLTE--EMVLEKHRGAITVIQYSPDV--SMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~iwd~~~~~ 527 (612)
+.++++..+..+|.--.+..|++||+....+.. ...-++|...|+|++|..+- .-|++++-|..+.=|.+....
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 888999999999999999999999999877632 22456899999999998654 357888999999999987643
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.3e-29 Score=203.35 Aligned_cols=272 Identities=16% Similarity=0.255 Sum_probs=224.0
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCC
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDG 268 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~ 268 (612)
....|.++.|+|.++.|++++.||++++||....+....+ .|..++.+++|.+ ...+++|+-||.|+.+|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~----~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl---- 82 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF----KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL---- 82 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe----ecCCceeeeeccC-CceEEEeccCceEEEEEe----
Confidence 4678999999999999999999999999999998887777 8999999999996 456899999999999999
Q ss_pred CCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEec
Q 007229 269 SGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 348 (612)
.+++. ..+..|..++.++.+... ...+++|++
T Consensus 83 n~~~~-----------------------------------------------~~igth~~~i~ci~~~~~-~~~vIsgsW 114 (323)
T KOG1036|consen 83 NTGNE-----------------------------------------------DQIGTHDEGIRCIEYSYE-VGCVISGSW 114 (323)
T ss_pred cCCcc-----------------------------------------------eeeccCCCceEEEEeecc-CCeEEEccc
Confidence 44332 234458899999999822 688999999
Q ss_pred CCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEE
Q 007229 349 DGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELAL 428 (612)
Q Consensus 349 dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (612)
|++|++||.+......... ....|.++...++.|++|+.+..+.+||+++....
T Consensus 115 D~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~------------------------- 168 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP------------------------- 168 (323)
T ss_pred CccEEEEeccccccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccccch-------------------------
Confidence 9999999999855544444 55699999999999999999999999999876643
Q ss_pred EEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc--ccceeeccccC---------ce
Q 007229 429 VSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL--TEEMVLEKHRG---------AI 497 (612)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~---------~i 497 (612)
...++-..+..+.|+++-|++.-.++++-||.|.+=.++.... .....++.|.. +|
T Consensus 169 -------------~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 169 -------------FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred -------------hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 1122233567899999999998899999999998877765521 22345666643 69
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec
Q 007229 498 TVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557 (612)
Q Consensus 498 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 557 (612)
++|+|+|-...||||+.||.|.+||+.+.+.+ ..+......|.+++|+.||..||+++.
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL-KQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcchhhh-hhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999999999887 445556678999999999999999874
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.5e-29 Score=202.70 Aligned_cols=308 Identities=15% Similarity=0.178 Sum_probs=222.5
Q ss_pred EEEEeCCCCce-----eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-----eeeeeeecCCCeEEEEE
Q 007229 41 VLIRYLDKPLH-----VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-----LKNEFKVLSGRIDDLQW 110 (612)
Q Consensus 41 i~i~~~~~~~~-----~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~ 110 (612)
..-|+.+.+.. +..|++|.+.|++++||.||++||+++.|++|+||++.+-.. +...+ .-+..+.++|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dhpT~V~F 140 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDHPTRVVF 140 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCCceEEEE
Confidence 44455544433 234789999999999999999999999999999999987532 11111 1235788999
Q ss_pred CCCCCEEEEEeCCCCeeeEEEEEec---CCceee---------eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 111 SPDGLRIVACGDGKGKSFVRAFMWD---SGTTVG---------DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 111 s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
+||-+-+++....++ .+.++-.. .|.... --+.|...+..+-....+.+ +++++.|..|.+|+++
T Consensus 141 apDc~s~vv~~~~g~--~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGN--KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-IMSASLDTKICLWDLK 217 (420)
T ss_pred CCCcceEEEEEccCC--EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceE-EEEecCCCcEEEEecC
Confidence 999988877766554 35555554 222111 12357777888888888885 9999999999999999
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC---C--CeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS---G--EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
|+.+..+......-+..+.||+|+++++++.-..+++|.+-- | +.+.......+|...|..++|+++.+.+++.
T Consensus 218 -Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 218 -GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 888888777777778889999999999999999999998632 2 1222222245999999999999999999999
Q ss_pred eCCCcEEEEEeecC---CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 254 SADKSAKVWEILED---GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 254 ~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
+.||++++||.+-. ++....++....+........+.-....+..+++.+....+.+|..+.++.....-..|...|
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~I 376 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTI 376 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCce
Confidence 99999999998522 233334444422221122222222222366677788889999999888777666677899999
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
.+++|.+. ++++++++ |..+++..
T Consensus 377 s~is~~~~-g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 377 SSISYSSD-GKYIATCG-DRYVRVIR 400 (420)
T ss_pred eeEEecCC-CcEEeeec-ceeeeeec
Confidence 99999931 78888876 56677664
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=213.42 Aligned_cols=242 Identities=15% Similarity=0.189 Sum_probs=209.3
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceee----E------------e--ccCCCceEEEEECCCCCEEEE
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVE----F------------Y--GEHGYPVTVARYSPNGEWIAS 76 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~----~------------~--~~h~~~v~~~~~s~d~~~las 76 (612)
.|+-.+++++++||+++.+.++ +++|.=|++.+++..+ . . ++|...|.+++.|+||+|||+
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4677899999999999999998 8999999988776331 0 1 278899999999999999999
Q ss_pred eeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEc
Q 007229 77 ADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFK 156 (612)
Q Consensus 77 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (612)
|+.|..|.||+..+.+. .+.+.+|.+.|.+++|-.....|.+++.+. .+.+|+.+....+.++-+|++.|..+...
T Consensus 220 gg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Dr---svkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADR---SVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred cCCCceEEEecCcccch-hhcccccccceeeeeeecCccceeeeecCC---ceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999984 457999999999999999989999999998 57899999999999999999999999998
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC----
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---- 232 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---- 232 (612)
..++ .+-.|+.|+++++|++.. +....+.+|.+.+.|++|-.+. .+++|+.+|.|.+|++.+.+++.......
T Consensus 296 ~reR-~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 296 SRER-CVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred cccc-eEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeeccccccC
Confidence 8887 566677999999999944 4444677899999999998654 68999999999999999998887764321
Q ss_pred -----CccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 233 -----GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 233 -----~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+...|++++..|..+++++|+.+|.|++|.+
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 12237999999999999999999999999999
No 111
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.1e-27 Score=216.92 Aligned_cols=500 Identities=15% Similarity=0.163 Sum_probs=317.6
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCC---CEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG---EWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~---~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
..-.||+|+++++.+.++.|.||...++++++.+.+|..+++.+.+.|.. .++.+++.||.|++||...+. +.+.+
T Consensus 20 ~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~-Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE-LLKTF 98 (792)
T ss_pred cccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE-EEEEE
Confidence 34679999999999999999999999999999999999999999999854 477799999999999999998 44444
Q ss_pred eecCCCeEEEEECC---CCCEEEEEeCCCCeeeEEEEEecC-------------CceeeeeccCCceEEEEEEcCCCCEE
Q 007229 99 KVLSGRIDDLQWSP---DGLRIVACGDGKGKSFVRAFMWDS-------------GTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 99 ~~~~~~i~~~~~s~---~~~~l~~~~~~~~~~~i~i~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
.. ..++..+.+.| +-...+..+.+... .+.....+. ..+...+.+|.. -.++.+++.+.+
T Consensus 99 ~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~-~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~- 174 (792)
T KOG1963|consen 99 DN-NLPVHALVYKPAQADISANVYVSVEDYS-ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEF- 174 (792)
T ss_pred ec-CCceeEEEechhHhCccceeEeecccce-eeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceE-
Confidence 43 33444444433 11122222222110 000000111 111112233333 467888888873
Q ss_pred EEEeecCCeEEEEeCCCCeeeec----ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCeeeeeeccCCcccc
Q 007229 163 IATCGEDFLVNFYEGPPFKFKLS----HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGS 237 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~ 237 (612)
...-.+..+.+|+.+....... -..|.-.+++.++||++++++++..||.|.+|.--. ...-.......-|..+
T Consensus 175 -~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 175 -KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred -EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 3334455688998877542111 234777799999999999999999999999997432 1111111112367889
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
|.+++|+++|.+|++|+..|.+.+|.+ ++++ ++|
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~----~T~~--kqf---------------------------------------- 287 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQL----ETGK--KQF---------------------------------------- 287 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEee----cCCC--ccc----------------------------------------
Confidence 999999999999999999999999999 5554 222
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-----------cccceEEEEe--eccEEE
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-----------YDARIKCLAA--VEEVIF 384 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----------~~~~i~~~~~--~~~~l~ 384 (612)
++.-..+|..+.++ +++...+....|+.|.+....+......... ...-...++. ..+.++
T Consensus 288 -----LPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 288 -----LPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -----ccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 22244567777777 2266777777788888876644333222111 1222233333 346677
Q ss_pred EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCe
Q 007229 385 TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSE 464 (612)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 464 (612)
..+..+.+++||+-+...... +-+...+. ..+. ..+.-.+++++.+..|.+
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~---------------------~~v~~~n~----~~~~----~n~~v~itav~~~~~gs~ 412 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYK---------------------LQVCDENY----SDGD----VNIQVGITAVARSRFGSW 412 (792)
T ss_pred ecCCCceEEEEeccccceeee---------------------EEEEeecc----cCCc----ceeEEeeeeehhhccceE
Confidence 788888888888876654300 00000000 0000 012235788888888999
Q ss_pred EEEEe--------cC--CeEEEEEccCccc---ccceeeccccCceEEEEEcC--CCcEEEEEcCCCeEEEEecCCccee
Q 007229 465 AIVGG--------QN--GKLHIYSISGNTL---TEEMVLEKHRGAITVIQYSP--DVSMFASADGNREAIVWDRVSKEVK 529 (612)
Q Consensus 465 l~~~~--------~d--g~v~i~d~~~~~~---~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~i~iwd~~~~~~~ 529 (612)
+++.- .| -.+++|....... ........|...+...+|.+ ....+++++.||.++||-+...+.+
T Consensus 413 maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 413 MATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred EEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 98863 23 3678887754432 11233456777766666654 2338999999999999988433221
Q ss_pred ---------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe---cCceEEE
Q 007229 530 ---------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM---DDFNVVS 597 (612)
Q Consensus 530 ---------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~l~s 597 (612)
...-..|..++++++|+.||..|+. +.|++|.+||..+.. .+......-..++..+.|. .....+.
T Consensus 493 ~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (792)
T KOG1963|consen 493 YKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKN-ELLCTEGSRNWPIAELLFTAQTQNDGALV 570 (792)
T ss_pred CcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChh-hhhccccccccchHhHhhhccccccccee
Confidence 1112237889999999999976655 567889999998833 4444433333345555554 2233444
Q ss_pred ccCCCeEEEEEec
Q 007229 598 SGEDACIRVWRLA 610 (612)
Q Consensus 598 ~~~d~~i~~w~~~ 610 (612)
....+.+.+|++-
T Consensus 571 ~~~~~~l~~WNll 583 (792)
T KOG1963|consen 571 HATQQRLSVWNLL 583 (792)
T ss_pred eccCceEehHhhh
Confidence 4556778888874
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.8e-28 Score=197.63 Aligned_cols=246 Identities=16% Similarity=0.267 Sum_probs=209.4
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC-EEEEEeecCCeEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP-FRIATCGEDFLVNF 174 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~ 174 (612)
..+..|.+.|++++. ++.++|+++.|. .|.||+......+..+-.|.+.|+++.|.+.-. .-|++|+.||.|.+
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGssDe---tI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSSDE---TIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCCCC---cEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 356689999999998 588999999998 689999999999999999999999999998763 13999999999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
|+....+++.++++|.+.|+.++++|.+++.++.+.|+.++.||+-.|+.-... .-......+.|+|.|.+++.++
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~----~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL----NLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee----ccCCcceeeEEcCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999887776 3334445599999999998887
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.+ .|-+|.+ ++......+..+ ..........++.+++|..++.+.+||... ..+...+.+|...|.++.
T Consensus 188 ~~-~i~i~q~----d~A~v~~~i~~~-----~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RN-KIDIYQL----DNASVFREIENP-----KRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIA 256 (362)
T ss_pred cc-EEEEEec----ccHhHhhhhhcc-----ccceeeeecCCceEEEecCCceEEEeccCC-CccceeeecchhheeeeE
Confidence 76 5899998 666655554443 123333344588999999999999999655 778889999999999999
Q ss_pred EE-ecCCcEEEEEecCCcEEEEEcCCce
Q 007229 335 AL-KISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 335 ~~-~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
+. ++.+.+|++++.||.|++||++...
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEccccc
Confidence 66 6667899999999999999998763
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=226.20 Aligned_cols=242 Identities=16% Similarity=0.207 Sum_probs=209.2
Q ss_pred CCCCcee---EEEEcc-CCCEEEEec-CCEEEEEeCCCCc------eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEE
Q 007229 16 TERGRGI---LISGNP-KTDTILYCN-GRSVLIRYLDKPL------HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVR 84 (612)
Q Consensus 16 ~~~~~v~---~~~~s~-d~~~l~~~~-~~~i~i~~~~~~~------~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~ 84 (612)
.++..+. ++..++ .+++|.+++ ||.|++|+...-. .+..++.|...|+.++...+|+.|+++|.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3454555 555554 566688888 9999999986322 3566889999999999999999999999999999
Q ss_pred EeecCCCc-eeeeeeeecCCCeEEEEE-CCCCCEEEEEeCCCCeeeEEEEEecCC--ceee--------eec-cCCceEE
Q 007229 85 IWGTHNGF-VLKNEFKVLSGRIDDLQW-SPDGLRIVACGDGKGKSFVRAFMWDSG--TTVG--------DFD-GHSRRVL 151 (612)
Q Consensus 85 iwd~~~~~-~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~~~~~~~i~i~~~~~~--~~~~--------~~~-~~~~~v~ 151 (612)
+|+...+. .....+..|...|.|+++ .++...+|++|-++ .|.+|+.+++ +.+. .+. ++..+|+
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~---~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR---KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCc---cEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 99998773 245688899999999999 88888999999888 4567777655 2222 334 8899999
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE 231 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 231 (612)
+++.++.|. ++++|+..+.+++||.++++.+..++||...|.++..++||..+++++.||+|++||+...+++.++.
T Consensus 176 SLA~N~t~t-~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-- 252 (735)
T KOG0308|consen 176 SLAMNQTGT-IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-- 252 (735)
T ss_pred eeecCCcce-EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--
Confidence 999999996 79999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.|...|+++..+|+-.++++|+.||.|..=|+
T Consensus 253 -vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 253 -VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred -eccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 78889999999999999999999999999888
No 114
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.2e-27 Score=225.21 Aligned_cols=233 Identities=12% Similarity=0.115 Sum_probs=185.0
Q ss_pred EccCCCEEEEe----c---CCEEEEEeCCCCceeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce----
Q 007229 26 GNPKTDTILYC----N---GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV---- 93 (612)
Q Consensus 26 ~s~d~~~l~~~----~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~---- 93 (612)
+...++++|.. + .+.|.+|+......+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 34445566652 1 358899998887788889999999999999996 78999999999999999986421
Q ss_pred ---eeeeeeecCCCeEEEEECCCCCEE-EEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 94 ---LKNEFKVLSGRIDDLQWSPDGLRI-VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 94 ---~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
....+.+|...|.+++|+|++..+ ++++.++ .+++|+..+++.+..+. |...|.+++|+|+|. +|++++.|
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg---tIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s~D 188 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS---FVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVG 188 (568)
T ss_pred cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC---eEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEecC
Confidence 223577899999999999999865 5777777 57888888888777776 668899999999999 58999999
Q ss_pred CeEEEEeCCCCeeeecccccccceEE-----EEECCCCCeEEEEEcCC----cEEEEecCC-CCeeeeeeccCCccccEE
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNC-----IRFSPDGSKLISVSSDR----KGLIYDGKS-GEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~~v~ 239 (612)
+.|++||+++++.+..+.+|.+.+.+ ..|++++++|++++.|+ +|++||+++ ++++..+. ...+.+.+.
T Consensus 189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~ 267 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLI 267 (568)
T ss_pred CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceE
Confidence 99999999999999899999876543 34568999999988774 799999985 55555542 113333344
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.....+++.++++|+.|+.|++|++
T Consensus 268 p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EeeeCCCCCEEEEEECCCeEEEEEc
Confidence 4444556888999999999999999
No 115
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.97 E-value=5.8e-28 Score=216.56 Aligned_cols=459 Identities=17% Similarity=0.191 Sum_probs=299.2
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
.|..++|-|||..|+.+.++.+.+||.+.|.+++.+++|.+.|.|++||.||+++|+|+.|..|.+|+-+-... .-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---eee
Confidence 78899999999999999999999999999999999999999999999999999999999999999998765432 234
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC
Q 007229 100 VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 100 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
.|...|.|+.|.|-...|++++-.. .-.|....+--.-.....++.+++|..||++ ++.|-.+|+|.+-+...
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsd------FglWS~~qK~V~K~kss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSD------FGLWSPEQKSVSKHKSSSRIICCSWTNDGQY-LALGMFNGTISIRNKNG 163 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhh------ccccChhhhhHHhhhhheeEEEeeecCCCcE-EEEeccCceEEeecCCC
Confidence 6899999999999999999998775 3455533322222234568899999999995 99999999999987433
Q ss_pred Cee--eecccccccceEEEEECCCC-----CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 180 FKF--KLSHREHSNFVNCIRFSPDG-----SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 180 ~~~--~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
.+. +..-.|.+.+|.+++|+|.. ..+++.....++.++.+. |+.+..- ..-.-...++.+.++|.+++.
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~---r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD---RALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc---ccCCCCchhheeccCCcEEEE
Confidence 222 22234578899999999963 467888888888888864 5555433 144556679999999999999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
|+.|+.+.+|.- .+-.+.+... ....|+.
T Consensus 240 GGsdk~L~~fTR-----~GvrLGTvg~----------------------------------------------~D~WIWt 268 (1081)
T KOG1538|consen 240 GGSDKQLSLFTR-----DGVRLGTVGE----------------------------------------------QDSWIWT 268 (1081)
T ss_pred ccCCCceEEEee-----cCeEEeeccc----------------------------------------------cceeEEE
Confidence 999999999985 4444433221 2234444
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeee-------------------ceecccceEE------EEeeccEEEEec
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKL-------------------EKKYDARIKC------LAAVEEVIFTAG 387 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------------------~~~~~~~i~~------~~~~~~~l~~~~ 387 (612)
++..+ +++.++.|+.||+|..|++.......+ .......|.| ++.-.+.+++--
T Consensus 269 V~~~P-NsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQL 347 (1081)
T KOG1538|consen 269 VQAKP-NSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQL 347 (1081)
T ss_pred EEEcc-CCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecc
Confidence 44442 256666677777776665542211100 0001112221 222233333333
Q ss_pred CCCeEEEEecCCCCCCccceeccCC--CcceeeecCCCCcEEEEEeeccEEEee-cccceeeecccceEEEEEE--cc-C
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGS--QPLDLSLALSSPELALVSTESGVILLD-SLKVMSKIDLGFTVTACAI--AP-D 461 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--s~-~ 461 (612)
. .+|.+|.+.++........-... .....++----...++...+..+.-++ .+-..++....+-|.-+.+ -| .
T Consensus 348 p-eki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~g 426 (1081)
T KOG1538|consen 348 P-EKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPPG 426 (1081)
T ss_pred c-ceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCCC
Confidence 2 35666766655433211110000 011111111111233333334444333 1111111111222222222 23 3
Q ss_pred CCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccccee
Q 007229 462 GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARIN 541 (612)
Q Consensus 462 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 541 (612)
..-|++|..||.|.-.=+++.-+ ..+......|.|+..+...+.||+..+.++..++|+.+++.+.+ ...++
T Consensus 427 REgL~vGlknGqV~kiF~dN~~P---iLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~Q-----Epg~n 498 (1081)
T KOG1538|consen 427 REGLLVGLKNGQVLKIFVDNLFP---ILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQ-----EPGAN 498 (1081)
T ss_pred cceeEEEecCCcEEEEEecCCch---hheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEee-----cCCCc
Confidence 45688899998766544444333 22344556899999999999999999999999999999998753 33578
Q ss_pred EEEecCCC-cEEE
Q 007229 542 CLAWSPSS-TMVA 553 (612)
Q Consensus 542 ~~~~s~~~-~~l~ 553 (612)
+++|+... .+|+
T Consensus 499 SV~wNT~~E~Mlc 511 (1081)
T KOG1538|consen 499 SVAWNTQCEDMLC 511 (1081)
T ss_pred eEEeeccccceEE
Confidence 89998643 3444
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.7e-28 Score=220.91 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=235.2
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee-eeeeecCCCeEE-EEECC-CCCEEEEEeCCCC
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK-NEFKVLSGRIDD-LQWSP-DGLRIVACGDGKG 125 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~-~~~s~-~~~~l~~~~~~~~ 125 (612)
.+..+.+.||...|..+++.+.. .++++|+||++++|+-...+.+. ..+.+|.+.|.. ++|-+ ++-+|++++.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~- 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT- 81 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc-
Confidence 45667899999999999877665 89999999999999998776554 456678888877 88886 445688888888
Q ss_pred eeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE
Q 007229 126 KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 126 ~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 205 (612)
++.++..+...++..+.+|...|.++....++. +++|+.|.++++|.. +++...+++|+..|.+++.-|++ .+
T Consensus 82 --~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 82 --TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred --eEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cE
Confidence 567777789999999999999999999888874 999999999999975 45556699999999999999988 78
Q ss_pred EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 285 (612)
++|+.|.+|++|.- ++.+.++ .+|...|..+++.+++. +++++.||.|++|++ +++.+
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf---~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-----~ge~l----------- 212 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTF---SGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-----DGEVL----------- 212 (745)
T ss_pred EeccCcceeeeccC--Cchhhhh---ccchhheeeeEEecCCC-eEeecCCceEEEEec-----cCcee-----------
Confidence 99999999999974 7788888 48999999999998754 889999999999997 44444
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
....+|..-+.++... + ++.++++++|+++++|+.. .+.+
T Consensus 213 -----------------------------------~~~~ghtn~vYsis~~~~--~~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 213 -----------------------------------LEMHGHTNFVYSISMALS--DGLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred -----------------------------------eeeeccceEEEEEEecCC--CCeEEEecCCceEEEeecC--ceEE
Confidence 3445688888888844 5 7899999999999999887 4444
Q ss_pred eceecccceEEEEe-eccEEEEecCCCeEEEEecCCCCC
Q 007229 365 LEKKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLCEGEC 402 (612)
Q Consensus 365 ~~~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~~~~~ 402 (612)
........++++.. .++-+++|+.||.|++|.....+.
T Consensus 254 ~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEecCccceEEEEEeeCCCEEEeccCceEEEEEeccccc
Confidence 44435558888888 688899999999999998875543
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=210.33 Aligned_cols=294 Identities=20% Similarity=0.234 Sum_probs=226.5
Q ss_pred EEEEEecCCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE
Q 007229 129 VRAFMWDSGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
+.+|+..+|....++++. ...-.++..-. ..|++++-.....+.+|.+..........--.++|.+++-+|+|.+|+.
T Consensus 20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~a 98 (476)
T KOG0646|consen 20 CIVWDLRTGTSLLQYKGSYLAQAASLTALN-NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLA 98 (476)
T ss_pred eeEEecCCCceeEEecCcccccchhhhhhc-hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEe
Confidence 567777788888888765 22222222221 2455666666678999998776655544445678999999999999999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
|+..|.|++|.+.+|..+..+ .+|-..|+++.|+.||.+|++++.||.|.+|.+.. .+..
T Consensus 99 g~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------lv~a----------- 158 (476)
T KOG0646|consen 99 GTISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------LVSA----------- 158 (476)
T ss_pred ecccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------eccc-----------
Confidence 889999999999999999988 49999999999999999999999999999999821 0000
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe-cCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK-ISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
.. ....++...+..|.-+|+++.... .....+++++.|.++++||+..+.....
T Consensus 159 ---------------~~---------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt- 213 (476)
T KOG0646|consen 159 ---------------DN---------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT- 213 (476)
T ss_pred ---------------cc---------CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE-
Confidence 00 113456677889999999998883 2467899999999999998877644332
Q ss_pred eecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceee
Q 007229 367 KKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSK 446 (612)
Q Consensus 367 ~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (612)
T Consensus 214 -------------------------------------------------------------------------------- 213 (476)
T KOG0646|consen 214 -------------------------------------------------------------------------------- 213 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc--------------cccceeeccccC--ceEEEEEcCCCcEEE
Q 007229 447 IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT--------------LTEEMVLEKHRG--AITVIQYSPDVSMFA 510 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--------------~~~~~~~~~~~~--~i~~~~~s~~~~~l~ 510 (612)
+..+..+.+++++|-++.+++|+++|.|.+.++.... ......+.+|.+ +|+|++++-||.+|+
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 2234468889999999999999999998888775322 123456778888 999999999999999
Q ss_pred EEcCCCeEEEEecCCcceeeecccccccceeEEEecCCC
Q 007229 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS 549 (612)
Q Consensus 511 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 549 (612)
+|+.||.++|||+.+.+++ +.+....++|+-+.+.|-.
T Consensus 294 SGd~dg~VcvWdi~S~Q~i-Rtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCI-RTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchHHHH-HHHhhhccccceeEeeccc
Confidence 9999999999999999987 4444467899999996643
No 118
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.4e-28 Score=197.46 Aligned_cols=300 Identities=18% Similarity=0.222 Sum_probs=206.2
Q ss_pred cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee--eeeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEE
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI--GEFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKV 261 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i 261 (612)
.+++|...|++++|+.||++|++++.|+.|++|++++.... ..+. ..-.-+-.+.+.|.||.+-++... ...++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh-ccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 47899999999999999999999999999999998864321 1111 111223568899999987666554 4457999
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
|.+....+.+-...... || ....-..|.-.+..+-.. .+..
T Consensus 160 yk~~K~~dG~~~~~~v~--------------------------------~D------~~~f~~kh~v~~i~iGiA-~~~k 200 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVH--------------------------------ID------NLEFERKHQVDIINIGIA-GNAK 200 (420)
T ss_pred EEeeecccCCCCccccc--------------------------------cc------ccccchhcccceEEEeec-CCce
Confidence 98843222111110000 00 001122344455554444 2278
Q ss_pred EEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecC
Q 007229 342 TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421 (612)
Q Consensus 342 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (612)
++.+++.|..|.+|++.. +...... +.
T Consensus 201 ~imsas~dt~i~lw~lkG-q~L~~id-------------------------------tn--------------------- 227 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLKG-QLLQSID-------------------------------TN--------------------- 227 (420)
T ss_pred EEEEecCCCcEEEEecCC-ceeeeec-------------------------------cc---------------------
Confidence 888999999999998873 3222110 00
Q ss_pred CCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEcc---Ccc---cccceeeccccC
Q 007229 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSIS---GNT---LTEEMVLEKHRG 495 (612)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~---~~~---~~~~~~~~~~~~ 495 (612)
...-+..++||+|+++++++---.|++|.+- .|. ......+.+|..
T Consensus 228 ----------------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 228 ----------------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred ----------------------------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 0123557899999999999988889999873 232 234567899999
Q ss_pred ceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee------eec----ccccccceeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 496 AITVIQYSPDVSMFASADGNREAIVWDRVSKEVK------LNN----MLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~----~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
.|..++|||+.+.+++.+.||+++|||+.-.... ++. +....+....++.+|+|+.||.+. ...++++.
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~ 358 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFA 358 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEE
Confidence 9999999999999999999999999997532211 011 111223344899999999988765 45699999
Q ss_pred ccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEE
Q 007229 566 IGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 566 ~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~ 608 (612)
.+++. ..-.....|...|.+|+|+ +|++++++| |..+++..
T Consensus 359 se~g~-~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 359 SEDGK-DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cccCc-cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 99843 4444456799999999999 999999988 66677754
No 119
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.2e-27 Score=225.22 Aligned_cols=250 Identities=15% Similarity=0.202 Sum_probs=190.1
Q ss_pred eeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCC-CCEEEEEeCCCCeeeEEEEEecCC--------ceeeeeccCC
Q 007229 77 ADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD-GLRIVACGDGKGKSFVRAFMWDSG--------TTVGDFDGHS 147 (612)
Q Consensus 77 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~i~i~~~~~~--------~~~~~~~~~~ 147 (612)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +.+|++++.++ .+++|+..++ .++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~-~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dg---tIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-PVIKLKGHTSSILDLQFNPCFSEILASGSEDL---TIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCc-eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCCccccccccceEEeecCC
Confidence 5678899999988765 45578899999999999997 78999999988 5677777643 2345688999
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 227 (612)
..|.+++|+|++.+++++++.|++|++||+.+++....+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 9999999999998778899999999999999998777765 567899999999999999999999999999999998887
Q ss_pred eeccCCccccEEE-----EEEecCCCEEEEEeCCC----cEEEEEeecCCCC-CeeEeeeeccCccccceeeeeeeccCC
Q 007229 228 FSSEDGHHGSIYA-----VSWSPDGKKVLTVSADK----SAKVWEILEDGSG-GRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 228 ~~~~~~~~~~v~~-----i~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
+ .+|.+.+.. ..|++++.++++++.|+ +|++||+ .. ..++..+...
T Consensus 205 l---~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl----r~~~~pl~~~~ld----------------- 260 (568)
T PTZ00420 205 F---HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL----KNTTSALVTMSID----------------- 260 (568)
T ss_pred E---ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC----CCCCCceEEEEec-----------------
Confidence 7 367765433 23458889999988774 7999998 32 3333322211
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-cccceEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-YDARIKCL 376 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~ 376 (612)
.+.+.+. ..+.+.++.++++|..|+.|++|++..+....+... +..+..++
T Consensus 261 ---------------------------~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 261 ---------------------------NASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSF 312 (568)
T ss_pred ---------------------------CCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccce
Confidence 1111111 112233478899999999999999987754443322 55677778
Q ss_pred EeeccEE
Q 007229 377 AAVEEVI 383 (612)
Q Consensus 377 ~~~~~~l 383 (612)
++.+++.
T Consensus 313 ~f~Pkr~ 319 (568)
T PTZ00420 313 GFLPKQI 319 (568)
T ss_pred EEccccc
Confidence 7755443
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.4e-28 Score=219.93 Aligned_cols=285 Identities=15% Similarity=0.227 Sum_probs=235.6
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCcee--eEeccCCCceEE-EEECC-CCCEEE
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHV--EFYGEHGYPVTV-ARYSP-NGEWIA 75 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~--~~~~~h~~~v~~-~~~s~-d~~~la 75 (612)
||.+.++.... .|...|..+++.+.. .++.++ ++++++|+-...+.+ ..+.+|.+-|.+ ++|-+ |+-.|+
T Consensus 1 ~~~Y~ls~~l~----gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 1 MPQYKLSHELE----GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV 75 (745)
T ss_pred CCcceeEEEec----cCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE
Confidence 66677666554 566788888877766 556665 899999998655443 447788888888 88886 556799
Q ss_pred EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEE
Q 007229 76 SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEF 155 (612)
Q Consensus 76 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~ 155 (612)
+|+.|.+|.+|...+.. ....+.+|+..|.++....++. +++++-|. ++..|..++....+++|+..|+++++
T Consensus 76 ~g~~D~~i~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~-----TakvW~~~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT-LISGSWDS-----TAKVWRIGELVYSLQGHTASVWAVAS 148 (745)
T ss_pred eecccceEEEEecCCCC-chhhhhccccceeeeecCCcCc-eEeccccc-----ceEEecchhhhcccCCcchheeeeee
Confidence 99999999999999998 4458999999999999998888 99999998 57788888888999999999999999
Q ss_pred cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 156 KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 156 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
-|++ .++||+.|.+|++|.- ++.+.++.+|.+.|+.+++-+++. +++++.||.|+.|++ +|+.+.+. .+|.
T Consensus 149 l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~---~ght 219 (745)
T KOG0301|consen 149 LPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEM---HGHT 219 (745)
T ss_pred cCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeee---eccc
Confidence 9998 5999999999999986 778889999999999999998764 889999999999998 77777777 4999
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
.-++++....++..++++++|+++++|+. . ++.+.+..+.
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~----~--e~~q~I~lPt---------------------------------- 259 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKK----D--ECVQVITLPT---------------------------------- 259 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeec----C--ceEEEEecCc----------------------------------
Confidence 99999998888889999999999999997 3 5555554332
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
..++++.+.. +.-+++|+.||.|++|.....
T Consensus 260 ------------tsiWsa~~L~--NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 260 ------------TSIWSAKVLL--NGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ------------cceEEEEEee--CCCEEEeccCceEEEEEeccc
Confidence 2455555555 567888888888888876643
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.4e-25 Score=206.41 Aligned_cols=241 Identities=19% Similarity=0.217 Sum_probs=207.7
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC-ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP-LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.|.+.-+.++|.|+|++|.+++ ++.|++|+.... +....+.-|...|.+++.... ++++++.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~--~f~~~s~~~tv~~y~fps~~- 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN--HFLTGSEQNTVLRYKFPSGE- 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc--ceEEeeccceEEEeeCCCCC-
Confidence 4667788999999999999988 899999987765 444545557788887776544 89999999999999999887
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
....+....-++.+++|+.+|+++|.++++. .+.+...++......+++|.++|.++.|+|++. +||+.+-||.|+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~---~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~ 163 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDT---AVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQ 163 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCce---eEEEEeccccchheeecccCCceeeeeEcCCCC-EEEEEecCceEE
Confidence 3446666778999999999999999999998 568888888999999999999999999999999 599999999999
Q ss_pred EEeCCCCeeeeccccc--------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 174 FYEGPPFKFKLSHREH--------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
+||+.++.+..++.+- ...+..++|+|++..++..+.|+.|++|+..+.+....+... .+...+..++|+|
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSP 242 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-ccccceEEEEEcC
Confidence 9999999888776531 345778999999888888899999999999999988888643 4445599999999
Q ss_pred CCCEEEEEeCCCcEEEEEe
Q 007229 246 DGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~ 264 (612)
+|+|||+++.+|.|.+||.
T Consensus 243 nG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNV 261 (933)
T ss_pred CCcEEeeeccCCcEEEEec
Confidence 9999999999999999999
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-27 Score=193.65 Aligned_cols=272 Identities=18% Similarity=0.258 Sum_probs=208.5
Q ss_pred ccccceEEEEECC-CCCeEEEEEcCCcEEEEecCC-CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 188 EHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 188 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..++.|.+++||| ...++++++.|++||+|+++. |....+. ...|.++|.+++|+.||..+++++.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka--~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL- 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA--QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL- 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh--hhccCCCeEEEEEccCCceEEeeccCCceEEEEc-
Confidence 4567899999999 455666889999999999987 4444433 3479999999999999999999999999999999
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTIL 344 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~ 344 (612)
.+++. ..+..|..+|..+.|. ......|+
T Consensus 102 ---~S~Q~-----------------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 102 ---ASGQV-----------------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLV 131 (347)
T ss_pred ---cCCCe-----------------------------------------------eeeeecccceeEEEEecCCCcceeE
Confidence 55533 3344599999999999 43346889
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (612)
+|+.|.+|+.||++...++....
T Consensus 132 TGSWDKTlKfWD~R~~~pv~t~~--------------------------------------------------------- 154 (347)
T KOG0647|consen 132 TGSWDKTLKFWDTRSSNPVATLQ--------------------------------------------------------- 154 (347)
T ss_pred ecccccceeecccCCCCeeeeee---------------------------------------------------------
Confidence 99999999999998655433221
Q ss_pred cEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC
Q 007229 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
.+..+.++.. -...++++..+..|.+|+++++..+.......-+-.+++++..+
T Consensus 155 ------------------------LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~ 208 (347)
T KOG0647|consen 155 ------------------------LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ 208 (347)
T ss_pred ------------------------ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe
Confidence 2223333333 23568888899999999998765432232233345689999999
Q ss_pred CCcEEEEEcCCCeEEEEecCCccee-eecccccc---------cceeEEEecCCCcEEEEeecCcEEEEEEccCCCccee
Q 007229 505 DVSMFASADGNREAIVWDRVSKEVK-LNNMLFHT---------ARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRI 574 (612)
Q Consensus 505 ~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~---------~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 574 (612)
|....|.|+-+|.+.|..+..+... .-.+..|. -.|++++|+|.-..|++++.||++.+||-+. . ..+
T Consensus 209 d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda-r-~kL 286 (347)
T KOG0647|consen 209 DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA-R-TKL 286 (347)
T ss_pred cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh-h-hhh
Confidence 8888899999999999998876321 11233343 3588999999999999999999999999887 4 667
Q ss_pred eeecccccCeeeEEEe-cCceEEE
Q 007229 575 TIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 575 ~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
...+.|..+|++..|. +|.+++-
T Consensus 287 k~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 287 KTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred hccCcCCCccceeEecCCCCEEEE
Confidence 7788899999999999 8887654
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.7e-27 Score=190.05 Aligned_cols=282 Identities=19% Similarity=0.206 Sum_probs=218.7
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
..+.|.++.|+|.++. |+.+++||++++||.....+...+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce
Confidence 3578999999999885 777779999999999988666655 48999999999874 46899999999999999998887
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (612)
..- .|..++.++.+++....+++|+.|++|++||. ........+... ..+.++...++.|++|+.+
T Consensus 89 ~ig----th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~----R~~~~~~~~d~~------kkVy~~~v~g~~LvVg~~~ 154 (323)
T KOG1036|consen 89 QIG----THDEGIRCIEYSYEVGCVISGSWDKTIKFWDP----RNKVVVGTFDQG------KKVYCMDVSGNRLVVGTSD 154 (323)
T ss_pred eec----cCCCceEEEEeeccCCeEEEcccCccEEEEec----cccccccccccC------ceEEEEeccCCEEEEeecC
Confidence 766 89999999999998888999999999999998 544444444333 3778888889999999999
Q ss_pred CEEEEEEcCCCCCCceee-cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEE
Q 007229 306 GIISIFSASNLDKAPLSF-SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIF 384 (612)
Q Consensus 306 ~~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 384 (612)
..+.+||++....+.+.. ..-.-.+.++++.+ ++.-++.++-||.|.+=.++......... .+|.-.
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skk--------yaFkCH--- 222 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKK--------YAFKCH--- 222 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhc--------eeEEee---
Confidence 999999999877665332 23445677888775 46778888899998876655442211110 000000
Q ss_pred EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCe
Q 007229 385 TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSE 464 (612)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 464 (612)
. ........-.+|++++|+|-.+.
T Consensus 223 -----------r---------------------------------------------~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 223 -----------R---------------------------------------------LSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred -----------e---------------------------------------------cccCCceEEEEeceeEeccccce
Confidence 0 00001112347999999999999
Q ss_pred EEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC
Q 007229 465 AIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG 514 (612)
Q Consensus 465 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (612)
||+|+.||.|.+||+.+.+. ...+......|.+++|+.||..||.++.
T Consensus 247 faTgGsDG~V~~Wd~~~rKr--l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKR--LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhh--hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999988776 5667666778999999999999999874
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=204.05 Aligned_cols=287 Identities=18% Similarity=0.204 Sum_probs=226.8
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--CCeeeecccccccceEEEEECCCCC-eEEEEEcCCcEEEEecCCCC
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFKLSHREHSNFVNCIRFSPDGS-KLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~ 223 (612)
.+.|+++.|+|..+ ++++++.|+++++|.+. ....++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 46899999999999 79999999999999754 4445556666678999999999999 88999999999999999887
Q ss_pred eeeeeeccCCc-cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE
Q 007229 224 KIGEFSSEDGH-HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV 302 (612)
Q Consensus 224 ~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (612)
....-... ++ ...+.....++++++|+..+..|.|.+... .+++.+.++...
T Consensus 292 ~~k~~~~~-g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha----kT~eli~s~Kie---------------------- 344 (514)
T KOG2055|consen 292 VTKLKPPY-GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA----KTKELITSFKIE---------------------- 344 (514)
T ss_pred cccccCCC-CcccchhheeEecCCCCeEEEcccCceEEeehh----hhhhhhheeeec----------------------
Confidence 65443222 33 346778889999999999999999999998 788887776543
Q ss_pred EcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccE
Q 007229 303 SLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382 (612)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (612)
+.+..+.|+. ++..|++.+.+|.|.+||++...+.....
T Consensus 345 -------------------------G~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~--------------- 383 (514)
T KOG2055|consen 345 -------------------------GVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFV--------------- 383 (514)
T ss_pred -------------------------cEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEe---------------
Confidence 4567777872 27888888889999999998775544322
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
-... -.-++++.|+++
T Consensus 384 --------------D~G~--------------------------------------------------v~gts~~~S~ng 399 (514)
T KOG2055|consen 384 --------------DDGS--------------------------------------------------VHGTSLCISLNG 399 (514)
T ss_pred --------------ecCc--------------------------------------------------cceeeeeecCCC
Confidence 0000 024678899999
Q ss_pred CeEEEEecCCeEEEEEccC----cccccceeeccccCceEEEEEcCCCcEEEEEcC--CCeEEEEecCCcceeeecccc-
Q 007229 463 SEAIVGGQNGKLHIYSISG----NTLTEEMVLEKHRGAITVIQYSPDVSMFASADG--NREAIVWDRVSKEVKLNNMLF- 535 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~- 535 (612)
.|||+|+..|.|.|||.++ ..+.++..+..-...|++|+|+||.+.||.++. +..+|+-.+.+.... ..+..
T Consensus 400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF-sNfP~~ 478 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF-SNFPTS 478 (514)
T ss_pred ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee-ccCCCC
Confidence 9999999999999999653 344456666677788999999999999998875 567898888776653 33322
Q ss_pred --cccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 536 --HTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 536 --~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
.-+.|+|++|||.+.+||.|..+|.+.+|.+.
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 34569999999999999999999999999874
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.7e-28 Score=220.81 Aligned_cols=287 Identities=18% Similarity=0.308 Sum_probs=223.2
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc---CCEEEEEEcCCEEEEE
Q 007229 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ---NDHLITVSLGGIISIF 311 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~ 311 (612)
.....+|...++-..++.++.. .+++|.+........+...+... +.....+..+.|. .+.+++++.+|.|.+|
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~k--qn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTK--QNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccc--cceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 3445677777887778877654 78888885443444443333211 1112222223333 7889999999999999
Q ss_pred EcCC--CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCC
Q 007229 312 SASN--LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFD 389 (612)
Q Consensus 312 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 389 (612)
|+.. ..+.+..+..|...+..+.|+.....+|++|++||.|++||++..+.......
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~--------------------- 174 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS--------------------- 174 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---------------------
Confidence 9988 45566688999999999999976699999999999999999987665443321
Q ss_pred CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEE
Q 007229 390 NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVG 468 (612)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~ 468 (612)
....|..+.|+| .+.+++++
T Consensus 175 -----------------------------------------------------------nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 175 -----------------------------------------------------------NSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred -----------------------------------------------------------cchhhhceeeccCCCceEEEe
Confidence 123578889998 57789999
Q ss_pred ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCC
Q 007229 469 GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548 (612)
Q Consensus 469 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 548 (612)
.+.|.+++||++.... ....+.+|.++|.++.|+|++.+||+|+.|++|+|||..+.+...........++.++.|-|+
T Consensus 196 ~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred cCCceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 9999999999987653 467789999999999999999999999999999999998766543323335678999999998
Q ss_pred CcE-EEEee--cCcEEEEEEccCCCcceeeeecccccCeeeEEEe--cCceEEEccCCCeEEE
Q 007229 549 STM-VATGS--IDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM--DDFNVVSSGEDACIRV 606 (612)
Q Consensus 549 ~~~-l~s~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~ 606 (612)
..+ ||+++ .|..|+|||+..+. -+..++..|...++.++|- |...|.+++.||+|..
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccchhhhhhccccceEEEEeecccc-ccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 764 67665 58899999999977 8889999999999999998 6677999999998754
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=8.4e-28 Score=208.05 Aligned_cols=240 Identities=15% Similarity=0.185 Sum_probs=205.6
Q ss_pred CCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCc---eeeEe--ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC
Q 007229 16 TERGRGILISGNPKTDTILYCNGRSVLIRYLDKPL---HVEFY--GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~---~~~~~--~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~ 90 (612)
.|-+-|+++++|...+++.+|+.|.|.|||+.... .+..| ....+-|.++.++|||+.|++|+.-.++.|||+..
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 46678999999999999999999999999997542 12222 23466799999999999999999999999999987
Q ss_pred Cce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 91 GFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 91 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
... ++.++....-..++++.+||.+...++..++ .|.||++.....++.|++|++.+.||.+++||. .|-||+-|
T Consensus 497 pTprikaeltssapaCyALa~spDakvcFsccsdG---nI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-klWTGGlD 572 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDG---NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-KLWTGGLD 572 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCccceeeeeccCC---cEEEEEcccceeeecccCCCCCceeEEecCCCc-eeecCCCc
Confidence 654 4444554455678899999999999988888 478898889999999999999999999999998 59999999
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
.+||.||+++++.+... .....|.++.++|++.+|+.|-+++.+.|......+..+.. .|...|.++.|.+.|++
T Consensus 573 ntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh----lheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH----LHESCVLSLKFAYCGKW 647 (705)
T ss_pred cceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceeec----ccccEEEEEEecccCce
Confidence 99999999998876553 34577999999999999999999999999987655554444 79999999999999999
Q ss_pred EEEEeCCCcEEEEEe
Q 007229 250 VLTVSADKSAKVWEI 264 (612)
Q Consensus 250 l~~~~~dg~i~iw~~ 264 (612)
+++.+.|.-+..|..
T Consensus 648 fvStGkDnlLnawrt 662 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRT 662 (705)
T ss_pred eeecCchhhhhhccC
Confidence 999999999999998
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-27 Score=205.00 Aligned_cols=264 Identities=19% Similarity=0.302 Sum_probs=203.8
Q ss_pred CccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 233 GHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
.|.+.|..+.+.|... .+++.+..+.+.|||.. ...-.....
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~t----k~~s~~~~~--------------------------------- 164 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYT----KHPSKPKAS--------------------------------- 164 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEec----cCCCccccc---------------------------------
Confidence 7899999999999654 55666778899999982 221111100
Q ss_pred EcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
....+...+.+|...-.+++|+......+++++.|+.|++||+..........
T Consensus 165 ---~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~------------------------ 217 (422)
T KOG0264|consen 165 ---GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV------------------------ 217 (422)
T ss_pred ---ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc------------------------
Confidence 01233456778888778888885558899999999999999987543310000
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee-cccceEEEEEEcc-CCCeEEEEe
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI-DLGFTVTACAIAP-DGSEAIVGG 469 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~ 469 (612)
.....+ .|...|..++|++ +..++++.+
T Consensus 218 --------------------------------------------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 218 --------------------------------------------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred --------------------------------------------------cceEEeecCCcceehhhccccchhhheeec
Confidence 000111 1455688899998 556788899
Q ss_pred cCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCC
Q 007229 470 QNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548 (612)
Q Consensus 470 ~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 548 (612)
.|+.+.|||++++.........+|.++|.|++|+| ++..||+|+.|++|++||+++.......+.+|...|.++.|||+
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 99999999999644444778889999999999999 77889999999999999999988877889999999999999996
Q ss_pred C-cEEEEeecCcEEEEEEccCCC------------cceeeeecccccCeeeEEEe-cCc-eEEEccCCCeEEEEEec
Q 007229 549 S-TMVATGSIDTCVIIYEIGKPA------------SSRITIKNAHLGGVYGVAFM-DDF-NVVSSGEDACIRVWRLA 610 (612)
Q Consensus 549 ~-~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~~~d~~i~~w~~~ 610 (612)
. ..||+++.|+.+.|||+..-+ .+++....||...|..+.|. ... .++|+++|+.+.||++.
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 5 578999999999999997622 13456778999999999999 444 48899999999999986
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.7e-28 Score=188.20 Aligned_cols=246 Identities=20% Similarity=0.269 Sum_probs=200.4
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC---ceeeEeccCCCceEEEEECC--CCCEEEEeeCcCeEEEeecC
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP---LHVEFYGEHGYPVTVARYSP--NGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~s~--d~~~las~~~d~~i~iwd~~ 89 (612)
.|+..|..+...-.|+.||+++ |+.|+|+...+. +++..|.||+++|..++|.. -|.+||+++.||.|.||.-+
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 4666777788888999999998 899999998754 45777999999999999987 89999999999999999999
Q ss_pred CCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCC---ceeeeeccCCceEEEEEEcCC---C-
Q 007229 90 NGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSG---TTVGDFDGHSRRVLSCEFKPT---R- 159 (612)
Q Consensus 90 ~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~---~- 159 (612)
+++- .......|...|++++|.|. |-.|+.++.|+ .|.|..++.. ........|.-.|++++|.|. |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG---~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG---KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCC---cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 8853 33466789999999999996 45777888888 4677777643 233446789999999999986 3
Q ss_pred ---------CEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCC----CeEEEEEcCCcEEEEecCCCCe
Q 007229 160 ---------PFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDG----SKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 160 ---------~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
.+.|++|+.|..|++|+..+++ ...++.+|.+.|+.++|.|.- .++++++.||++.||.......
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 1369999999999999988754 334589999999999999964 4899999999999998663222
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
..+....+.....+..+.|+..|+.|++++.|+.+.+|.-
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 2222223456788999999999999999999999999986
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.9e-27 Score=201.77 Aligned_cols=261 Identities=21% Similarity=0.304 Sum_probs=205.8
Q ss_pred cCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCceee---------eeeeecCCCeEEEEECCCCC-EEEEEeCCCC
Q 007229 57 EHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFVLK---------NEFKVLSGRIDDLQWSPDGL-RIVACGDGKG 125 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~ 125 (612)
.|.+.|+.+.+-|+. ..+|+.+..+.|.|||........ ..+.+|...=+.++|++... +|++++.+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~- 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH- 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC-
Confidence 589999999999965 567778899999999987543321 27889999888899999654 677777776
Q ss_pred eeeEEEEEecC-------CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--CCeeeecccccccceEEE
Q 007229 126 KSFVRAFMWDS-------GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFKLSHREHSNFVNCI 196 (612)
Q Consensus 126 ~~~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~ 196 (612)
.+.+|+.+. -.+...+.+|...|..++|+|....++++++.|+.+.|||.+ +.+......+|.++|.|+
T Consensus 201 --~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 201 --TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred --cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 456666662 224567899999999999999988899999999999999999 566666788999999999
Q ss_pred EECC-CCCeEEEEEcCCcEEEEecCCCCe-eeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 197 RFSP-DGSKLISVSSDRKGLIYDGKSGEK-IGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 197 ~~s~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+|+| ++..||+|+.|++|++||+++-.. +..+ .+|...|..+.|+|. ...|++++.|+.+.+||+..- ..
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~---e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i----g~ 351 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTF---EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI----GE 351 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceec---cCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc----cc
Confidence 9999 556788999999999999987554 4444 599999999999995 567888999999999999321 11
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEE
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAII 353 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 353 (612)
.+...... ..+...+..-.||...|..+.|.+...-.+++.+.|+.+.
T Consensus 352 eq~~eda~--------------------------------dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 352 EQSPEDAE--------------------------------DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred ccChhhhc--------------------------------cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 11100000 2223344566789999999999977788999999999999
Q ss_pred EEEcCC
Q 007229 354 KWIRGV 359 (612)
Q Consensus 354 ~wd~~~ 359 (612)
||.+..
T Consensus 400 IW~~s~ 405 (422)
T KOG0264|consen 400 IWQMAE 405 (422)
T ss_pred Eeeccc
Confidence 998763
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-27 Score=185.70 Aligned_cols=257 Identities=20% Similarity=0.329 Sum_probs=200.1
Q ss_pred ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCcEEEEE
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~iw~ 263 (612)
...|.+.|..+...--|+.|++++.|++|+|+..+.......+....+|.+||..++|.. .|..|++++.||.|.+|.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 346888888888888899999999999999999988765444444579999999999976 799999999999999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQT 342 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 342 (612)
- ++++-.+ ......|...|++++|. ..-+-.
T Consensus 87 e----~~g~w~k--------------------------------------------~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 87 E----ENGRWTK--------------------------------------------AYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred c----CCCchhh--------------------------------------------hhhhhhhcccceeecccccccceE
Confidence 7 4442221 23455699999999999 444678
Q ss_pred EEEEecCCcEEEEEcCCce---eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeee
Q 007229 343 ILSSSYDGAIIKWIRGVGY---SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419 (612)
Q Consensus 343 l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (612)
|++++.||.|.+.+.+... ...+...|.-
T Consensus 119 LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~------------------------------------------------ 150 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGGWTTSKIVFAHEI------------------------------------------------ 150 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCCccchhhhhcccc------------------------------------------------
Confidence 8899999999998776541 1111111222
Q ss_pred cCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC---C-----------CeEEEEecCCeEEEEEccCcccc
Q 007229 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD---G-----------SEAIVGGQNGKLHIYSISGNTLT 485 (612)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~~dg~v~i~d~~~~~~~ 485 (612)
.++++++.|. | +.|++|+.|..|+||+.+++...
T Consensus 151 --------------------------------GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 151 --------------------------------GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK 198 (299)
T ss_pred --------------------------------ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence 3444444442 2 57999999999999999998877
Q ss_pred cceeeccccCceEEEEEcCCC----cEEEEEcCCCeEEEEecCCc--ceeeecccccccceeEEEecCCCcEEEEeecCc
Q 007229 486 EEMVLEKHRGAITVIQYSPDV----SMFASADGNREAIVWDRVSK--EVKLNNMLFHTARINCLAWSPSSTMVATGSIDT 559 (612)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~ 559 (612)
....+.+|.+.|+.++|.|.- .+||+++.||++.||..... +-..+.+......+..+.||+.|+.|++++.|+
T Consensus 199 ~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 199 LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence 778899999999999999954 58999999999999976532 112233444567899999999999999999999
Q ss_pred EEEEEEccCCC
Q 007229 560 CVIIYEIGKPA 570 (612)
Q Consensus 560 ~i~iwd~~~~~ 570 (612)
.|.+|.-...+
T Consensus 279 kvtlwke~~~G 289 (299)
T KOG1332|consen 279 KVTLWKENVDG 289 (299)
T ss_pred EEEEEEeCCCC
Confidence 99999876544
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=2.5e-27 Score=205.13 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=230.8
Q ss_pred ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC---eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 188 EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE---KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 188 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.|..-|.++.+|...+++++|+. |.|+|||+.... .+..+... .....|.++.+.|||+.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeec
Confidence 57788899999999999999885 889999987543 23333222 35678999999999999999999999999999
Q ss_pred ecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 265 LEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
......-. ..+........+++.+ ++.+..+
T Consensus 495 ----AapTprik--------------------------------------------aeltssapaCyALa~s-pDakvcF 525 (705)
T KOG0639|consen 495 ----AAPTPRIK--------------------------------------------AELTSSAPACYALAIS-PDAKVCF 525 (705)
T ss_pred ----cCCCcchh--------------------------------------------hhcCCcchhhhhhhcC-Cccceee
Confidence 33222111 1111122234445555 2378889
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALS 422 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (612)
++..||.|.|||+.+...++.+..|...+.||.. ++..|.+|+.|+++|.||++++...
T Consensus 526 sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql------------------- 586 (705)
T KOG0639|consen 526 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL------------------- 586 (705)
T ss_pred eeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-------------------
Confidence 9999999999999999999999999999999999 6899999999999999999877643
Q ss_pred CCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEE
Q 007229 423 SPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQY 502 (612)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 502 (612)
.+.+....|.++..+|.+.+|++|.+++.+.|......+ ...+.-|..-|.++.|
T Consensus 587 ----------------------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 587 ----------------------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKF 641 (705)
T ss_pred ----------------------hhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEe
Confidence 344456679999999999999999999999999887655 3667889999999999
Q ss_pred cCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 503 SPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 503 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
++-|+++++.+.|+.+-.|...-+..+++.. ..+.|.++..|.|.++++||+.|+...||.+
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999999999998875443 4788999999999999999999998888876
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3.2e-26 Score=184.61 Aligned_cols=320 Identities=19% Similarity=0.266 Sum_probs=230.7
Q ss_pred eccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 55 YGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
...|.+.|+++.+.+ .|+|+++|+.||.|.|||+++...... .+-|. + .+...+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-----s~li~------k--~~c~v~------------ 93 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-----SGLIA------K--HKCIVA------------ 93 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-----cccee------h--eeeecc------------
Confidence 457899999999998 789999999999999999987642110 00000 0 000000
Q ss_pred ecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCC---CCeEEEEEc
Q 007229 134 WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPD---GSKLISVSS 210 (612)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~ 210 (612)
...-.+|.-.|..+.|-|-+.-++.+++-|.++++||..+.+....++ .++.|.+-++||- -.++|+|..
T Consensus 94 ------~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr 166 (397)
T KOG4283|consen 94 ------KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTR 166 (397)
T ss_pred ------ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecC
Confidence 111246888999999999777689999999999999999998887775 4567888889884 347888888
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE-EEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK-VLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
+-.|++-|+.+|.....+ .+|.+.|.++.|+|...+ |++|+.||.+++||++.. ..+...+..++.
T Consensus 167 ~~~VrLCDi~SGs~sH~L---sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra---sgcf~~lD~hn~------- 233 (397)
T KOG4283|consen 167 DVQVRLCDIASGSFSHTL---SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA---SGCFRVLDQHNT------- 233 (397)
T ss_pred CCcEEEEeccCCcceeee---ccccCceEEEEeccCceeEEEecCCCceEEEEEeecc---cceeEEeecccC-------
Confidence 999999999999999999 499999999999997765 678899999999999321 123333332210
Q ss_pred eeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
......+.-..|.+.+..++|. + +.++++.+.|..+++|+...+........
T Consensus 234 -------------------------k~~p~~~~n~ah~gkvngla~tSd--~~~l~~~gtd~r~r~wn~~~G~ntl~~~g 286 (397)
T KOG4283|consen 234 -------------------------KRPPILKTNTAHYGKVNGLAWTSD--ARYLASCGTDDRIRVWNMESGRNTLREFG 286 (397)
T ss_pred -------------------------ccCccccccccccceeeeeeeccc--chhhhhccCccceEEeecccCcccccccc
Confidence 0111223356799999999999 6 88999999999999999887754332110
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
++ .....
T Consensus 287 ---~~----------------------------------------------------------------------~~n~~ 293 (397)
T KOG4283|consen 287 ---PI----------------------------------------------------------------------IHNQT 293 (397)
T ss_pred ---cc----------------------------------------------------------------------ccccc
Confidence 00 00000
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
....+. +. +.+...++.--.++.+.++++-.+.. +..+..|-..|.+.++-|+-+.+.+++.|+.|..|-.
T Consensus 294 ~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~--ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 294 TSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSF--VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceEE-Ee-ecccceEEEEecCCeEEEEEccCceE--EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 000011 11 22333344334557899999888877 6788889889999999999999999999999999976
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=7.9e-27 Score=208.12 Aligned_cols=342 Identities=19% Similarity=0.237 Sum_probs=230.9
Q ss_pred EEEcC--CCCEEEEEeecCCeEEEEeCCCCeee------ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe
Q 007229 153 CEFKP--TRPFRIATCGEDFLVNFYEGPPFKFK------LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 153 ~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
..|++ ....+|+.+.+||.|.++|.+..... .....|.+.|..+.|.|....|++++.|.++++||+++.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55544 44458999999999999997765443 44567999999999999777899999999999999999988
Q ss_pred eeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE
Q 007229 225 IGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS 303 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
...-. ..+|.+.+.+++|.| |...|++|+.||.+.|||+........ ..+... +.+.
T Consensus 135 ~G~~~-~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~--e~~~~~-------------------~~~~ 192 (720)
T KOG0321|consen 135 VGGRL-NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL--EEFDNR-------------------IYGR 192 (720)
T ss_pred eccee-ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH--HHHhhh-------------------hhcc
Confidence 87621 239999999999999 456789999999999999943221110 000000 0000
Q ss_pred cCCEEEEEEcCCCCCCceeecCcccce----eEEEEEecCCcEEEEEec-CCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 304 LGGIISIFSASNLDKAPLSFSGHVKNV----STLTALKISQQTILSSSY-DGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
..+. . -......+.......+...+ +.+.|-+ +..|++++. |+.|++||++........... ++
T Consensus 193 ~n~~-p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~--~~----- 261 (720)
T KOG0321|consen 193 HNTA-P-TPSKPLKKRIRKWKAASNTIFSSVTVVLFKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPR--GS----- 261 (720)
T ss_pred ccCC-C-CCCchhhccccccccccCceeeeeEEEEEec--cceeeeccCCCcceEEEeecccccccccCCC--cc-----
Confidence 0000 0 00000111122223344333 3344445 677777666 788888887765443221100 00
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEE
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAI 458 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 458 (612)
. .....-.....++++..
T Consensus 262 --------------------------------~------------------------------~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 262 --------------------------------D------------------------------KYPTHSKRSVGQVNLIL 279 (720)
T ss_pred --------------------------------c------------------------------CccCcccceeeeEEEEe
Confidence 0 00000001235788888
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCc--eEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccc
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA--ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFH 536 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 536 (612)
...|.+|++.+.|+.|+.|++.+....+...+.++... -..-..+||+.+|++|+.|...++|.+.+.+.....+.+|
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh 359 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH 359 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc
Confidence 88899999999999999999988776555555544322 2223578999999999999999999999998877889999
Q ss_pred ccceeEEEecCCC-cEEEEeecCcEEEEEEccCCCcce-------------eeeecccccCeeeEEEe
Q 007229 537 TARINCLAWSPSS-TMVATGSIDTCVIIYEIGKPASSR-------------ITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 537 ~~~i~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~-------------~~~~~~h~~~v~~~~~~ 590 (612)
.-.|++++|.|.. .-+|++++|.++++|++..+. +. ...+++|...+..+.++
T Consensus 360 t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l-~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss 426 (720)
T KOG0321|consen 360 TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL-EEIYAADKDSIVYEYSRRFKGHLPQVLNVNSS 426 (720)
T ss_pred ceEEEEEeeccccCCCceeeccCcceEEEeccCch-hhccccccchhhhhhhhhhhcccccccccccc
Confidence 9999999999843 347788999999999997633 22 23456777677666665
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-26 Score=197.95 Aligned_cols=294 Identities=16% Similarity=0.138 Sum_probs=230.8
Q ss_pred CEEEEEeCCCCceeeEeccCC-CceEEEEECCCCCEEEEee-CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 39 RSVLIRYLDKPLHVEFYGEHG-YPVTVARYSPNGEWIASAD-VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
..+.+||+.+|...-.+++-. ..-.++..- .+.+++++. ....|.+|.+....... ....-++.+.+++-+|+|.+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCceE
Confidence 579999999998888777652 111111111 235677664 34579999998776433 44456788999999999999
Q ss_pred EEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC---------CCeeeeccc
Q 007229 117 IVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP---------PFKFKLSHR 187 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~---------~~~~~~~~~ 187 (612)
|+.++..+ .+.+|...+|+.+..+.+|-..|+++.|+.||. .+++|+.||.|.+|.+. +-++...+.
T Consensus 96 l~ag~i~g---~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 96 LLAGTISG---NLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS 171 (476)
T ss_pred EEeecccC---cEEEEEeccccHHHHHHhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence 99987766 367777779999999999999999999999999 59999999999999742 345667788
Q ss_pred ccccceEEEEECCCC--CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 188 EHSNFVNCIRFSPDG--SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 188 ~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
+|.-+|+.+...+.| .+|++++.|.++++||+..|..+..+ .....+.+++.+|.++.+++|+.+|.|.+.++.
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE----ecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 999999999988753 58999999999999999999999998 678899999999999999999999999988873
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc--ceeEEEEE-ecCCcE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--NVSTLTAL-KISQQT 342 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~ 342 (612)
......+-+.. + .+ .........+.+|.+ .|++++++ + +.+
T Consensus 248 ~~~~~~~~v~~-k-------------------------------~~--~~~~t~~~~~~Gh~~~~~ITcLais~D--gtl 291 (476)
T KOG0646|consen 248 KLSGQSAGVNQ-K-------------------------------GR--HEENTQINVLVGHENESAITCLAISTD--GTL 291 (476)
T ss_pred cCCcccccccc-c-------------------------------cc--ccccceeeeeccccCCcceeEEEEecC--ccE
Confidence 21110000000 0 00 111233456778888 99999999 7 999
Q ss_pred EEEEecCCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 343 ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 343 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
|++|+.||.+++||+.+.++++......++|+.+.+
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 999999999999999999998887767788887777
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=195.40 Aligned_cols=287 Identities=16% Similarity=0.241 Sum_probs=227.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
.+.|+++.|+|....|+++|.++ .++++..+ ....++.+.-...+|.+++|.|+|...+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~---~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDG---TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCC---cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 46899999999999999999999 57888888 56677888778899999999999997799999999999999998
Q ss_pred Ceeeec--ccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC
Q 007229 180 FKFKLS--HREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 180 ~~~~~~--~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 256 (612)
.+..+. +.++. ..+.....+|++++|+..+..|.|.+....+++.+..+ .-.+.|..++|+.|++.|++++.+
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~----KieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF----KIEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee----eeccEEeeEEEecCCcEEEEEcCC
Confidence 876543 33443 45778889999999999999999999999999999999 678899999999999999999999
Q ss_pred CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce--eEEE
Q 007229 257 KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV--STLT 334 (612)
Q Consensus 257 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v--~~~~ 334 (612)
|.|.+||+ ....++..+.... .| +.++
T Consensus 366 GeV~v~nl----~~~~~~~rf~D~G-----------------------------------------------~v~gts~~ 394 (514)
T KOG2055|consen 366 GEVYVWNL----RQNSCLHRFVDDG-----------------------------------------------SVHGTSLC 394 (514)
T ss_pred ceEEEEec----CCcceEEEEeecC-----------------------------------------------ccceeeee
Confidence 99999999 7777776665432 12 2233
Q ss_pred EEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCc
Q 007229 335 ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQP 414 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 414 (612)
.+ .++.++++|+..|.|.|||.++.......
T Consensus 395 ~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~P------------------------------------------------ 425 (514)
T KOG2055|consen 395 IS-LNGSYLATGSDSGIVNIYDGNSCFASTNP------------------------------------------------ 425 (514)
T ss_pred ec-CCCceEEeccCcceEEEeccchhhccCCC------------------------------------------------
Confidence 33 22789999999999999986543211110
Q ss_pred ceeeecCCCCcEEEEEeeccEEEeecccceeeec-ccceEEEEEEccCCCeEEEEec--CCeEEEEEccCcccccceeec
Q 007229 415 LDLSLALSSPELALVSTESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIVGGQ--NGKLHIYSISGNTLTEEMVLE 491 (612)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~ 491 (612)
+++..+. ....|+++.|+||.++||.++. ...+++-.+.+... ...++
T Consensus 426 ---------------------------kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV--FsNfP 476 (514)
T KOG2055|consen 426 ---------------------------KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV--FSNFP 476 (514)
T ss_pred ---------------------------CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee--eccCC
Confidence 1111111 3346999999999999998875 46788888876554 22222
Q ss_pred c---ccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 492 K---HRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 492 ~---~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
. .-+.++|++|||.+.+||.|.++|.+.+|.+.
T Consensus 477 ~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 2 23569999999999999999999999999874
No 136
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.1e-26 Score=185.30 Aligned_cols=242 Identities=21% Similarity=0.230 Sum_probs=197.4
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC--eEEEEEcCCcEEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS--KLISVSSDRKGLI 216 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v 216 (612)
++..+..|..++++++.+ ++ .+|+|+.|-+|++||++....+..+..|.+.|+++.|.++-. .|++|+.||.|.+
T Consensus 35 ~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 456778999999999986 45 499999999999999999999999999999999999999775 8999999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ- 295 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (612)
|+....+.+..+ ++|.+.|+.++.+|.+++-++.+.|+.+++||+ -.++.-...+...... .+.|.
T Consensus 112 w~~~~W~~~~sl---K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL----V~Gr~a~v~~L~~~at------~v~w~~ 178 (362)
T KOG0294|consen 112 WRVGSWELLKSL---KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL----VRGRVAFVLNLKNKAT------LVSWSP 178 (362)
T ss_pred EEcCCeEEeeee---cccccccceeEecCCCceEEEEcCCceeeeehh----hcCccceeeccCCcce------eeEEcC
Confidence 999999888888 589999999999999999999999999999999 7777666555544221 14444
Q ss_pred -CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 296 -NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 296 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
+++++. ...+.|-+|.+........ + .....+.++.|.+ +..+++|..|+.|.+||.+...+...+..|..+|.
T Consensus 179 ~Gd~F~v-~~~~~i~i~q~d~A~v~~~-i-~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 179 QGDHFVV-SGRNKIDIYQLDNASVFRE-I-ENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK 253 (362)
T ss_pred CCCEEEE-EeccEEEEEecccHhHhhh-h-hccccceeeeecC--CceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence 444444 4456678887654322111 1 1224466666666 89999999999999999999888888888999999
Q ss_pred EEEe----eccEEEEecCCCeEEEEecCCCC
Q 007229 375 CLAA----VEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 375 ~~~~----~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
.+.+ ...+|++++.||.|++||+....
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 9997 34699999999999999998764
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.8e-24 Score=198.72 Aligned_cols=295 Identities=15% Similarity=0.124 Sum_probs=204.2
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEe-CCCCeeeEEEEEecCCceeeeeccCCce
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACG-DGKGKSFVRAFMWDSGTTVGDFDGHSRR 149 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 149 (612)
++++++++.|+.|++||+.+++. ...+..+ ..+..++|+|+++.+++++ .++ .+.+|+.++++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~---~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-TRTFPVG-QRPRGITLSKDGKLLYVCASDSD---TIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-EEEEECC-CCCCceEECCCCCEEEEEECCCC---eEEEEECCCCcEEEeccCCCC-
Confidence 35788999999999999998874 4455544 3467899999999875544 444 466666667877777766544
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC-cEEEEecCCCCeeeee
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR-KGLIYDGKSGEKIGEF 228 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~ 228 (612)
+..++|+|+++.++++++.++.+++||+.+.+.+..+.. ...+.+++|+|++++++++..++ .+.+||..+++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 467899999997666777889999999999887766653 23468899999999999888765 4677899888776655
Q ss_pred eccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCE
Q 007229 229 SSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307 (612)
Q Consensus 229 ~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (612)
.....+..++|+|+++++++++ .++.+++||+ .+++.+..+.....
T Consensus 154 ----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~----~~~~~~~~~~~~~~------------------------- 200 (300)
T TIGR03866 154 ----LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDV----ATRKVIKKITFEIP------------------------- 200 (300)
T ss_pred ----EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEc----Ccceeeeeeeeccc-------------------------
Confidence 2233457899999999886554 5899999999 77666554432110
Q ss_pred EEEEEcCCCCCCceeecCcccceeEEEEEecCCcE-EEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEe
Q 007229 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT-ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386 (612)
Q Consensus 308 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 386 (612)
. ..........+.+++. ++. +++...++.+.+||.++.+.....
T Consensus 201 ---------~-----~~~~~~~~~~i~~s~d-g~~~~~~~~~~~~i~v~d~~~~~~~~~~-------------------- 245 (300)
T TIGR03866 201 ---------G-----VHPEAVQPVGIKLTKD-GKTAFVALGPANRVAVVDAKTYEVLDYL-------------------- 245 (300)
T ss_pred ---------c-----cccccCCccceEECCC-CCEEEEEcCCCCeEEEEECCCCcEEEEE--------------------
Confidence 0 0000011224555532 444 344455667888887654432111
Q ss_pred cCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEE
Q 007229 387 GFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAI 466 (612)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 466 (612)
.....+.+++|+|++++|+
T Consensus 246 -------------------------------------------------------------~~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 246 -------------------------------------------------------------LVGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred -------------------------------------------------------------EeCCCcceEEECCCCCEEE
Confidence 0112467899999999998
Q ss_pred EE-ecCCeEEEEEccCcccccceeeccccCceEEEEEcC
Q 007229 467 VG-GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 467 ~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
++ ..+|.|.+||+.+++. ...++.. .....++++|
T Consensus 265 ~~~~~~~~i~v~d~~~~~~--~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 265 TTNGVSNDVSVIDVAALKV--IKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEcCCCCeEEEEECCCCcE--EEEEEcc-cccceeEeCC
Confidence 86 4689999999999886 4444433 4458888775
No 138
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.4e-23 Score=192.78 Aligned_cols=470 Identities=16% Similarity=0.185 Sum_probs=317.0
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC---EEEEEeCCCCeeeEEE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL---RIVACGDGKGKSFVRA 131 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~~~~~~~i~i 131 (612)
+.|-...-..-.||+|+++++.... ..|.||...+++++. .+..|..++..+.+.|... ++.+++.++ .|++
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~-~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G---~I~v 86 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT-SLEDHTAPLTSVIVLPSSENANYLIVCSLDG---TIRV 86 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhh-hcccccCccceeeecCCCccceEEEEEecCc---cEEE
Confidence 5555555556789999999988854 589999999999554 8999999999999988654 677888888 6899
Q ss_pred EEecCCceeeeeccCCceEEEEEEcC----CCCEEEEEeecC------------CeEEEEeCCCCe--eeecccccccce
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKP----TRPFRIATCGED------------FLVNFYEGPPFK--FKLSHREHSNFV 193 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~d------------~~i~~wd~~~~~--~~~~~~~~~~~v 193 (612)
|+|..+..+..+..+.. +..+.+.| ... .+..+..| +.++-+.+.+.. ....+.+|.. -
T Consensus 87 wd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~-~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~ 163 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLP-VHALVYKPAQADISA-NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-P 163 (792)
T ss_pred ecCCCcEEEEEEecCCc-eeEEEechhHhCccc-eeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-C
Confidence 99999999988875443 22222211 111 11122222 111111111111 1111223333 5
Q ss_pred EEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee-eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCe
Q 007229 194 NCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE-FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 272 (612)
.++.+++.|++.+..- +..+.+|+..++..... ......|...+++.+++|++++++++..||.|.+|.- -+.
T Consensus 164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d-----~~~ 237 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD-----FGS 237 (792)
T ss_pred ccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec-----ccc
Confidence 6788888887666554 56688998877552111 1112357777899999999999999999999999985 110
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCc
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGA 351 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~ 351 (612)
.........+.-|...|.+++|+ + +.+|++|+.+|.
T Consensus 238 -----------------------------------------~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~V 274 (792)
T KOG1963|consen 238 -----------------------------------------SDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGV 274 (792)
T ss_pred -----------------------------------------ccccccceEEEecccccceeEEecC--CceEeecccceE
Confidence 01112235567799999999999 6 999999999999
Q ss_pred EEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
+.+|.+.+++ .+.++.-.++|..+.+ +++.......|+.|.+....+........ .+......
T Consensus 275 Lv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs-gi~~~~~~------------- 339 (792)
T KOG1963|consen 275 LVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS-GIKPPTPS------------- 339 (792)
T ss_pred EEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc-CccCCCcc-------------
Confidence 9999999999 4455558899998888 78888888999999988775544320000 00000000
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec---------cccCceEEE
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE---------KHRGAITVI 500 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---------~~~~~i~~~ 500 (612)
..-....-.+.++++|.-+.++..+..|.|.+||+.+.+........ .+.-.++++
T Consensus 340 ---------------~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav 404 (792)
T KOG1963|consen 340 ---------------TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAV 404 (792)
T ss_pred ---------------ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeee
Confidence 00011223567888997778888899999999999776542111111 123457888
Q ss_pred EEcCCCcEEEEEcC--------C--CeEEEEecCCcc----eeeecccccccceeEEEecCC-C-cEEEEeecCcEEEEE
Q 007229 501 QYSPDVSMFASADG--------N--REAIVWDRVSKE----VKLNNMLFHTARINCLAWSPS-S-TMVATGSIDTCVIIY 564 (612)
Q Consensus 501 ~~s~~~~~l~~~~~--------d--~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~s~~-~-~~l~s~~~d~~i~iw 564 (612)
+.+-.|.+++|... | -.+++|-..... +..+...+|...+.+.++.+. . ...++++.||.++||
T Consensus 405 ~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 405 ARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 88889999998742 2 357889654433 333445678877777766642 2 278999999999999
Q ss_pred EccCC--------CcceeeeecccccCeeeEEEecCceEEEccCCCeEEEEEecc
Q 007229 565 EIGKP--------ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 565 d~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~~ 611 (612)
-+... .+.|...-..|..++++++|+.++.+++++.|+.|.+||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 98331 223444444589999999999444777888899999999865
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.6e-25 Score=180.58 Aligned_cols=301 Identities=18% Similarity=0.198 Sum_probs=228.0
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee---------------eecccccccceEEEEECC-CCCeEEE
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF---------------KLSHREHSNFVNCIRFSP-DGSKLIS 207 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---------------~~~~~~~~~~v~~~~~s~-~~~~l~~ 207 (612)
..|.+.|.++...+....++++|+.||.|.+||+++... ...-.+|.-.|.++.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 458899999999986555699999999999999876431 011236778899999999 5567888
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC---CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD---GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
++.|.+++|||..+-+....| ..++.|++-+++|- -.++++|..+-.|++-|+ .++..-
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi----~SGs~s---------- 181 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI----ASGSFS---------- 181 (397)
T ss_pred ccccceEEEeecccceeeEEe----ecCceeehhhcChhhhcceEEEEecCCCcEEEEec----cCCcce----------
Confidence 999999999999999999998 67888999999983 346777888889999999 555443
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
..+.+|...|.++.|++..+-.|++|+.||.|++||++...
T Consensus 182 ------------------------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras--- 222 (397)
T KOG4283|consen 182 ------------------------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS--- 222 (397)
T ss_pred ------------------------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc---
Confidence 56778999999999997667889999999999999987541
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
|.+++.|..+.... ..+
T Consensus 223 -------------------------gcf~~lD~hn~k~~--------------------------------------p~~ 239 (397)
T KOG4283|consen 223 -------------------------GCFRVLDQHNTKRP--------------------------------------PIL 239 (397)
T ss_pred -------------------------ceeEEeecccCccC--------------------------------------ccc
Confidence 23333343332111 011
Q ss_pred e-eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec-cccCce---EEEEEcCCCcEEEEEcCCCeEE
Q 007229 445 S-KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAI---TVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 445 ~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i---~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
+ ...|.+.+..++|+.|+.++++.+.|..+++|+..+|+-.....-+ .|+..+ ..+. +-+...++---.++.+.
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~la 318 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLA 318 (397)
T ss_pred cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEE
Confidence 1 2336778999999999999999999999999999887642111111 121110 1122 23344444445568999
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
++++-.+..+ ..+..|-..|.+.++-|+-+.+.++..|+.|..|-.
T Consensus 319 ll~~~sgs~i-r~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 319 LLNLLEGSFV-RRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEccCceEE-EeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999999887 668889999999999999999999999999999987
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.4e-24 Score=197.80 Aligned_cols=286 Identities=15% Similarity=0.141 Sum_probs=200.9
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE-EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL-ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
++++++.|+.+++||+.+++....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+. . ...+..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~-~~~~~~ 77 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---S-GPDPEL 77 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---C-CCCccE
Confidence 68999999999999999998888877654 46789999999977 456678999999999988877662 2 233567
Q ss_pred EEEecCCCEEEEE-eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 241 VSWSPDGKKVLTV-SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 241 i~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
++|+|+++.++++ +.++.+++||+ .+.+.+..+...
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~----~~~~~~~~~~~~--------------------------------------- 114 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDI----ETRKVLAEIPVG--------------------------------------- 114 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEEC----CCCeEEeEeeCC---------------------------------------
Confidence 8999999977655 45899999999 655554433211
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCC-cEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecC
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDG-AIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~ 398 (612)
..+..+++++ ++..++++..++ .+..||..+.+.....
T Consensus 115 --------~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-------------------------------- 153 (300)
T TIGR03866 115 --------VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV-------------------------------- 153 (300)
T ss_pred --------CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE--------------------------------
Confidence 1234466653 267777776654 4556666543321110
Q ss_pred CCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEe-cCCeEEEE
Q 007229 399 EGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG-QNGKLHIY 477 (612)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~i~ 477 (612)
.....+.+++|+|++++|++++ .++.|++|
T Consensus 154 -------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 154 -------------------------------------------------LVDQRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred -------------------------------------------------EcCCCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 0011245689999999886554 58999999
Q ss_pred EccCcccccceeecc---ccC--ceEEEEEcCCCcEEEE-EcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcE
Q 007229 478 SISGNTLTEEMVLEK---HRG--AITVIQYSPDVSMFAS-ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTM 551 (612)
Q Consensus 478 d~~~~~~~~~~~~~~---~~~--~i~~~~~s~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 551 (612)
|+.+++......+.. +.. ....++|+|++++++. .+.++.+.+||+.+++.... .. +...+.+++|+|+|++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~-~~-~~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY-LL-VGQRVWQLAFTPDEKY 262 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE-EE-eCCCcceEEECCCCCE
Confidence 999876522222211 111 2356889999998654 34567899999998877532 22 4557999999999999
Q ss_pred EEEe-ecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 552 VATG-SIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 552 l~s~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
|+++ +.++.|++||+.+ + +++..+... .....++|+
T Consensus 263 l~~~~~~~~~i~v~d~~~-~-~~~~~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 263 LLTTNGVSNDVSVIDVAA-L-KVIKSIKVG-RLPWGVVVR 299 (300)
T ss_pred EEEEcCCCCeEEEEECCC-C-cEEEEEEcc-cccceeEeC
Confidence 9876 5689999999998 6 666766644 555777764
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-25 Score=198.34 Aligned_cols=311 Identities=19% Similarity=0.217 Sum_probs=233.6
Q ss_pred ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC--EEEEEeCCCcEEE
Q 007229 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK--KVLTVSADKSAKV 261 (612)
Q Consensus 184 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~i~i 261 (612)
..+++|.+.|.++...|.|.+|++|+.||+++||.+.+|.++..+ ...+.|.+++|+|.+. .|+++ ....+.+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVA-VGECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEE-ecCceEE
Confidence 347899999999999999999999999999999999999999999 6778999999999765 34443 3444666
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
.+. .-+..+..... ..
T Consensus 469 vnp----~~G~~~e~~~t------------------------------------------------------------~e 484 (733)
T KOG0650|consen 469 VNP----IFGDRLEVGPT------------------------------------------------------------KE 484 (733)
T ss_pred eCc----cccchhhhcch------------------------------------------------------------hh
Confidence 554 22211111000 01
Q ss_pred EEEEE----ecCCcEEEEEcCCcee----eeeceecccceEEEEe--eccEEEEecCCC---eEEEEecCCCCCCcccee
Q 007229 342 TILSS----SYDGAIIKWIRGVGYS----SKLEKKYDARIKCLAA--VEEVIFTAGFDN---KVWRVPLCEGECGDAEHI 408 (612)
Q Consensus 342 ~l~~~----~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~~~~--~~~~l~~~~~~~---~i~~~~~~~~~~~~~~~~ 408 (612)
.|.++ ..++.+..|.-..... +.+...|...|..+.+ .|++|++...++ .+.+.++......
T Consensus 485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ----- 559 (733)
T KOG0650|consen 485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ----- 559 (733)
T ss_pred hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-----
Confidence 11111 1233455554432111 1233338889999999 788999887654 6667766654422
Q ss_pred ccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee-cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc
Q 007229 409 DVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI-DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE 487 (612)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 487 (612)
..+ ...+.+.++.|+|...+|++++. ..|+|||+....+ .
T Consensus 560 ------------------------------------~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel--v 600 (733)
T KOG0650|consen 560 ------------------------------------SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL--V 600 (733)
T ss_pred ------------------------------------CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH--H
Confidence 111 13456889999999999999876 5699999988766 5
Q ss_pred eeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
..+......|..++.+|.|.-|+.++.|+.+..+|+.-.....+.+..|...+++++|++.-.++++|+.||++.|+--.
T Consensus 601 KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 66666677899999999999999999999999999998877778888899999999999999999999999999998532
Q ss_pred -------CCCcceeeeecccccC----eeeEEEe-cCceEEEccCCCeEEEE
Q 007229 568 -------KPASSRITIKNAHLGG----VYGVAFM-DDFNVVSSGEDACIRVW 607 (612)
Q Consensus 568 -------~~~~~~~~~~~~h~~~----v~~~~~~-~~~~l~s~~~d~~i~~w 607 (612)
++..-.+..+++|... |....|+ ...+|++++.||+|++|
T Consensus 681 VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1112346778899876 8999999 77789999999999998
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.4e-25 Score=179.36 Aligned_cols=247 Identities=18% Similarity=0.168 Sum_probs=188.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
...|+.||+-|.+||+|+ +|.|.|||+.+-..-+.+.+|..+|++++||+||+.|+|+|.|..|.+||+..+..+. .+
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~-ri 103 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK-RI 103 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee-EE
Confidence 367999999999999998 8999999999999889999999999999999999999999999999999999998443 33
Q ss_pred eecCCCeEEEEECCCCCEEEEE--eCCCCeeeEEEEEecCCceeeee-ccC-----CceEEEEEEcCCCCEEEEEeecCC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVAC--GDGKGKSFVRAFMWDSGTTVGDF-DGH-----SRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~--~~~~~~~~i~i~~~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
....+|....|.|-.+..+.+ -.... .+..... +++.+ +.. ...-.+..|.+.|+| +++|...|
T Consensus 104 -rf~spv~~~q~hp~k~n~~va~~~~~sp----~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~y-IitGtsKG 175 (405)
T KOG1273|consen 104 -RFDSPVWGAQWHPRKRNKCVATIMEESP----VVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKY-IITGTSKG 175 (405)
T ss_pred -EccCccceeeeccccCCeEEEEEecCCc----EEEEecC--CceeeccCCCccccccccccccccCCCCE-EEEecCcc
Confidence 357899999999965443333 23321 2333332 22221 110 111223368899995 99999999
Q ss_pred eEEEEeCCCCeeeecccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCCC-------Ce--eeeeeccCCccccEEE
Q 007229 171 LVNFYEGPPFKFKLSHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG-------EK--IGEFSSEDGHHGSIYA 240 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~--~~~~~~~~~~~~~v~~ 240 (612)
.+.++|..+.+++..++-.. ..|..+.++..|+.|+.-+.|+.|+.|+++.- +. .+++... -....-.+
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~~Wk~ 254 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKLQWKK 254 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hhhhhhhh
Confidence 99999999999999887666 78999999999999999999999999997621 11 1111100 12234568
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeecc
Q 007229 241 VSWSPDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 241 i~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
++|+.+|.|++.++. ...+++|.- ..|.+++.+.+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~----~~GsLVKILhG~ 291 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEK----SIGSLVKILHGT 291 (405)
T ss_pred eeecCCccEEEeccccceeEEEEec----CCcceeeeecCC
Confidence 899999999887764 357999998 778887766544
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.8e-25 Score=203.40 Aligned_cols=287 Identities=19% Similarity=0.262 Sum_probs=227.4
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 177 (612)
..|..+.+.++|.|+|+.|.+++.++. +++|.-... +....+..+...|.+++.... .|++|+.+++|.+|..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~---ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGD---IRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCc---eEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeC
Confidence 468889999999999999999999983 455554443 444444458888888887655 5999999999999999
Q ss_pred CCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
.+++.-..+....-++++++|+.+|+++|.|+.|-.|++-++.+......+ .+|.++|.++.|+|++++||+.+-||
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l---rgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL---RGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee---cccCCceeeeeEcCCCCEEEEEecCc
Confidence 998877667777889999999999999999999999999999998888888 49999999999999999999999999
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 337 (612)
.|++|++ .++.+..++..-.. .
T Consensus 161 ~v~iw~~----~~~~~~~tl~~v~k-----------------------------------------------------~- 182 (933)
T KOG1274|consen 161 KVQIWDL----QDGILSKTLTGVDK-----------------------------------------------------D- 182 (933)
T ss_pred eEEEEEc----ccchhhhhcccCCc-----------------------------------------------------c-
Confidence 9999999 55554433322110 0
Q ss_pred cCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCccee
Q 007229 338 ISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDL 417 (612)
Q Consensus 338 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (612)
....
T Consensus 183 --n~~~-------------------------------------------------------------------------- 186 (933)
T KOG1274|consen 183 --NEFI-------------------------------------------------------------------------- 186 (933)
T ss_pred --cccc--------------------------------------------------------------------------
Confidence 0000
Q ss_pred eecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCce
Q 007229 418 SLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAI 497 (612)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i 497 (612)
....+..++|+|++..+++...|+.|.+|+..+...........+...+
T Consensus 187 -------------------------------~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~ 235 (933)
T KOG1274|consen 187 -------------------------------LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKF 235 (933)
T ss_pred -------------------------------ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccce
Confidence 0113567899999999999999999999999988875444445566669
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEE
Q 007229 498 TVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 498 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iw 564 (612)
..++|+|+|+|||+++.||.|.|||.++.+. ......|.+++|-|+..-+-.-...|...+|
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999999999999998433 1135689999999998766544444444444
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=188.10 Aligned_cols=289 Identities=17% Similarity=0.263 Sum_probs=215.4
Q ss_pred CCCceeEEEEccCCC--EEEEec-CCEEEEEeCCC----CceeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeec
Q 007229 17 ERGRGILISGNPKTD--TILYCN-GRSVLIRYLDK----PLHVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGT 88 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~--~l~~~~-~~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~ 88 (612)
+.++|++++|+|... .+|+|. .|+|-+||+.+ ..-+..+..|..+|.++.|+|. -..+.+.|.||+|++=|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 457999999999766 556665 69999999952 2335668899999999999994 467888899999999999
Q ss_pred CCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 89 HNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
+.... ....+......+..+.|+.+...++++..-+ .+.+++..+ +.....+.-|...|..++++|..++.++|+
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence 98752 1112223455788899999998888887766 357777775 445777888999999999999999999999
Q ss_pred ecCCeEEEEeCCCCeeee----cccccccceEEEEECCCCCeEEEEEcCCcEEEEecC----CCCeeeeeeccCCccc--
Q 007229 167 GEDFLVNFYEGPPFKFKL----SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK----SGEKIGEFSSEDGHHG-- 236 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~-- 236 (612)
+.|++.+|||++...... ....|...|.+..|||.+-.|++.+.|..|+|||.. .......+.-...+..
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl 421 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL 421 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccc
Confidence 999999999987654333 244799999999999988889999999999999983 3444444421111111
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC-EEEEEEcCCEEEEEEc
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND-HLITVSLGGIISIFSA 313 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 313 (612)
......|.|+..+++++-.-..|-++|- ..++.+..+..+....+. .+..+...+. .++.++..|.|.+|..
T Consensus 422 T~fKA~W~P~~~li~vg~~~r~IDv~~~----~~~q~v~el~~P~~~tI~-~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVVGRYPRPIDVFDG----NGGQMVCELHDPESSTIP-SVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cchhheeCCCccEEEEeccCcceeEEcC----CCCEEeeeccCccccccc-cceeecccccceeccCCccceEEEEec
Confidence 2334579999999999998889999998 778877776655432222 1222222344 4555566788888863
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.4e-27 Score=212.24 Aligned_cols=232 Identities=17% Similarity=0.250 Sum_probs=208.6
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
|...+.++..-..++.+++|+ +..+-+|.+.....+..|.+|+.+|.++.|+++..+|++|+.+|+|++||++..+ ..
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-IV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-hh
Confidence 445667777767788888888 5677799999888888899999999999999999999999999999999999988 66
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
+.+.+|...+..+.|+|-+.+.+.++.+.+ +.+|+.....+.+.+.+|...|..++|+|+|++ ++.+++|.++++|
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd---~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTD---LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW-VASGGEDNTVKIW 181 (825)
T ss_pred hhhhccccCcceeeeccceEEecccccccc---ceehhhhccCceeeecCCcceeEEEeecCCCce-eeccCCcceeeee
Confidence 699999999999999999999999888874 456666667899999999999999999999995 9999999999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
|+..|+....+..|++.+.++.|+|..-++++|+.|+++++||+++.+.+... +.....|.+.+|+|++..+++|..
T Consensus 182 d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~---~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 182 DLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG---KPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc---CCccCCceeeeecCCceeeecCch
Confidence 99999999999999999999999999999999999999999999988888777 356789999999999998888765
Q ss_pred C
Q 007229 256 D 256 (612)
Q Consensus 256 d 256 (612)
.
T Consensus 259 ~ 259 (825)
T KOG0267|consen 259 I 259 (825)
T ss_pred h
Confidence 4
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.3e-24 Score=173.60 Aligned_cols=261 Identities=21% Similarity=0.346 Sum_probs=191.6
Q ss_pred CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
.+|..-|.++.|.+-|+.+++++.|++++|||...+..+-.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~-------------------------------------- 51 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC-------------------------------------- 51 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE--------------------------------------
Confidence 378888999999999999999999999999997322222222
Q ss_pred EcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCC
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN 390 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 390 (612)
....+.|.+.|..+.|. +.-|+.+++++.|+++.+|.-....... +.
T Consensus 52 --------Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~----~~-------------------- 99 (361)
T KOG2445|consen 52 --------TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA----HG-------------------- 99 (361)
T ss_pred --------eeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc----cc--------------------
Confidence 23456799999999998 7678999999999999999754211100 00
Q ss_pred eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc--CCCeEEEE
Q 007229 391 KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP--DGSEAIVG 468 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~ 468 (612)
+-|.. ..........++.+.|.| -|-.||++
T Consensus 100 --~~Wv~---------------------------------------------~ttl~DsrssV~DV~FaP~hlGLklA~~ 132 (361)
T KOG2445|consen 100 --RRWVR---------------------------------------------RTTLVDSRSSVTDVKFAPKHLGLKLAAA 132 (361)
T ss_pred --ceeEE---------------------------------------------EEEeecCCcceeEEEecchhcceEEEEe
Confidence 00100 000111335689999998 46789999
Q ss_pred ecCCeEEEEEccCccc----ccce-------eeccccCceEEEEEcC---CCcEEEEEcCC-----CeEEEEecCCcce-
Q 007229 469 GQNGKLHIYSISGNTL----TEEM-------VLEKHRGAITVIQYSP---DVSMFASADGN-----REAIVWDRVSKEV- 528 (612)
Q Consensus 469 ~~dg~v~i~d~~~~~~----~~~~-------~~~~~~~~i~~~~~s~---~~~~l~~~~~d-----~~i~iwd~~~~~~- 528 (612)
+.||.++||+....-- .... ....+..+..|+.|+| ..++||.|+.+ +.++||.......
T Consensus 133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 9999999998753210 1111 2235677889999998 34688888776 5789997755441
Q ss_pred --eeecccccccceeEEEecCCC----cEEEEeecCcEEEEEEccCCC------------------cceeeeecccccCe
Q 007229 529 --KLNNMLFHTARINCLAWSPSS----TMVATGSIDTCVIIYEIGKPA------------------SSRITIKNAHLGGV 584 (612)
Q Consensus 529 --~~~~~~~~~~~i~~~~~s~~~----~~l~s~~~d~~i~iwd~~~~~------------------~~~~~~~~~h~~~v 584 (612)
....+.+|..+|++++|.|+- .+||+++.|| |+||.+.... .+.+..+..|+++|
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 234567899999999999953 4799999999 9999997300 13355688999999
Q ss_pred eeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 585 YGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 585 ~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
..+.|. -|..|.|.|.||+||+|...
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999999 99999999999999999753
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=204.10 Aligned_cols=288 Identities=15% Similarity=0.239 Sum_probs=227.8
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCC----ceeeEeccCC---CceEEEEECC-CCCEEEEeeCcCeEEEeecC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKP----LHVEFYGEHG---YPVTVARYSP-NGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~----~~~~~~~~h~---~~v~~~~~s~-d~~~las~~~d~~i~iwd~~ 89 (612)
.....+++..++-..|++++...+.||.++.. .+...+..-. ..+..|.|.. +.++||+++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45678899999999999999888888876532 2222222211 2344567775 56899999999999999998
Q ss_pred C--CceeeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 90 N--GFVLKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 90 ~--~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
. ...+...+..|...+.++.|++-. .+|++|+.|+ ++++|++...+...++.+..+.|..+.|+|...+.++++
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg---~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDG---TVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCc---eEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 7 333556888999999999999854 5778888888 689999999999999999999999999999888889999
Q ss_pred ecCCeEEEEeCCCC-eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 167 GEDFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 167 ~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
.+.|.+++||++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+++....... ....++..++|-|
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP 273 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRP 273 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceeeeeeecc
Confidence 99999999999764 45566889999999999999999999999999999999986654333211 4567899999999
Q ss_pred CCCE-EEEEe--CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 246 DGKK-VLTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 246 ~~~~-l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
+..+ |++++ .|-.|++||+ +.+..+...
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDv-------------------------------------------------rRPYIP~~t 304 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDV-------------------------------------------------RRPYIPYAT 304 (839)
T ss_pred CccchhhhhhccccceEEEEee-------------------------------------------------cccccccee
Confidence 7654 55554 3667888888 444455567
Q ss_pred ecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
+..|...++.++|...+...+.+++.||++..-..++
T Consensus 305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 7789999999999865578899999999887654443
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=175.60 Aligned_cols=293 Identities=15% Similarity=0.221 Sum_probs=215.0
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
..|+.|++.|. +||.|..||.|.+||+.+...-..+.+|..+|.+++||+||+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri- 103 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI- 103 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-
Confidence 78999999999 5999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 230 SEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
....+|+...|+|..+ .+++.-.+..-.+-++ .. ..+......
T Consensus 104 ---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~----s~--~~h~~Lp~d--------------------------- 147 (405)
T KOG1273|consen 104 ---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDF----SD--PKHSVLPKD--------------------------- 147 (405)
T ss_pred ---EccCccceeeeccccCCeEEEEEecCCcEEEEe----cC--CceeeccCC---------------------------
Confidence 7889999999999433 3333333444455555 22 111111000
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc-cceEEEEe--eccEEEE
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD-ARIKCLAA--VEEVIFT 385 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~--~~~~l~~ 385 (612)
... ..+.+.+..+.+..++++++|...|.+.++|..+.++........ ..|..+.+ .++.++.
T Consensus 148 -------~d~-------dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii 213 (405)
T KOG1273|consen 148 -------DDG-------DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII 213 (405)
T ss_pred -------Ccc-------ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEE
Confidence 000 000111111334448999999999999999999998887766544 67777777 8899999
Q ss_pred ecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE
Q 007229 386 AGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA 465 (612)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 465 (612)
-+.|..||.|++..-... +.+..+ .....++.+-.+.+-.+++||.+|.|+
T Consensus 214 NtsDRvIR~ye~~di~~~--------------------------~r~~e~---e~~~K~qDvVNk~~Wk~ccfs~dgeYv 264 (405)
T KOG1273|consen 214 NTSDRVIRTYEISDIDDE--------------------------GRDGEV---EPEHKLQDVVNKLQWKKCCFSGDGEYV 264 (405)
T ss_pred ecCCceEEEEehhhhccc--------------------------CccCCc---ChhHHHHHHHhhhhhhheeecCCccEE
Confidence 999999999998632211 000000 000001111133456789999999999
Q ss_pred EEEec-CCeEEEEEccCcccccceeecccc-CceEEEEEcCCCcEEEEEcCCCeEEEEecCCc
Q 007229 466 IVGGQ-NGKLHIYSISGNTLTEEMVLEKHR-GAITVIQYSPDVSMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 466 ~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 526 (612)
+.|+. ...++||....|.+ ++.+.+.. .....+.|+|-...+++- ..|.+++|.....
T Consensus 265 ~a~s~~aHaLYIWE~~~GsL--VKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 265 CAGSARAHALYIWEKSIGSL--VKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred EeccccceeEEEEecCCcce--eeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 88764 45899999999988 78888877 567889999998888888 6789999986543
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=7.1e-25 Score=179.72 Aligned_cols=330 Identities=18% Similarity=0.264 Sum_probs=226.8
Q ss_pred eeeecCCCeEEEEECC-----CCCEEEEEeCCCCeeeEEEEEecCCc---eeeee--ccCCceEEEEEEcCC---CCEEE
Q 007229 97 EFKVLSGRIDDLQWSP-----DGLRIVACGDGKGKSFVRAFMWDSGT---TVGDF--DGHSRRVLSCEFKPT---RPFRI 163 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~-----~~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~--~~~~~~v~~~~~~~~---~~~~l 163 (612)
....|..+|..++|.+ +-+.++++|.+. +.++...... .++.. ..|.+....++|+-+ ++-++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~r----vtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~l 108 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNR----VTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFL 108 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcE----EEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeE
Confidence 3446778899999985 234556665553 6677666332 23332 236777788888643 33368
Q ss_pred EEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
|.++.-|.|++.|+.++++...+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..+.-..+|...|.++.
T Consensus 109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 888899999999999999999999999999999999965 6889999999999999999999999988789999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC-ce
Q 007229 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA-PL 321 (612)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~ 321 (612)
|+++|.++++++.|.++++|++ ...+....++.... + +.+++-+-+.......+ ..
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l----~~~~f~~~lE~s~~-----------~--------~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRL----NVKEFKNKLELSIT-----------Y--------SPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred EcCCCCeeeccCCcceEEEEec----ChhHHhhhhhhhcc-----------c--------CCCCccCcCCcccccccccc
Confidence 9999999999999999999999 43332222221100 0 00000000000000000 11
Q ss_pred eecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC-CceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCC
Q 007229 322 SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG-VGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~ 400 (612)
+..-|...|.++.|. ++++++-+-++.|..|... -.+............
T Consensus 246 t~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~--------------------------- 295 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT--------------------------- 295 (385)
T ss_pred ccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccce---------------------------
Confidence 334588888888888 6889998888999999662 111100000000000
Q ss_pred CCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec-ccceEE--EEEEccCCCeEEEEecCCeEEEE
Q 007229 401 ECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID-LGFTVT--ACAIAPDGSEAIVGGQNGKLHIY 477 (612)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~--~~~~s~~~~~l~~~~~dg~v~i~ 477 (612)
..+.+++ ....|. ..+|.|-++.||.|.+.|.|++|
T Consensus 296 -----------------------------------------Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 296 -----------------------------------------TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred -----------------------------------------eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 0011111 111233 35667788999999999999999
Q ss_pred EccCcccccceeecc--ccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 478 SISGNTLTEEMVLEK--HRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 478 d~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
|++..+.....++.. ....|...+||.|+..|+...+|++|.-||..
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999877633333332 23569999999999999999999999999864
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=193.35 Aligned_cols=300 Identities=19% Similarity=0.205 Sum_probs=223.8
Q ss_pred cCCCceEE--EEECC---CCCEEEEeeCcCeEEEeecCCCce-----eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe
Q 007229 57 EHGYPVTV--ARYSP---NGEWIASADVSGSVRIWGTHNGFV-----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK 126 (612)
Q Consensus 57 ~h~~~v~~--~~~s~---d~~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 126 (612)
.|.-++.- ..|++ ....||.+.+||.|.++|...... .......|...|..+.|-|....|++++.|.
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs-- 122 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS-- 122 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCc--
Confidence 34444444 66776 346899999999999999876542 1345668999999999999667788888877
Q ss_pred eeEEEEEecCCceeee--eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-----------------------
Q 007229 127 SFVRAFMWDSGTTVGD--FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK----------------------- 181 (612)
Q Consensus 127 ~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----------------------- 181 (612)
.+++|+.+.++.... +.+|...|.+++|.|.++.++++|+.||.|.|||++-..
T Consensus 123 -T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 123 -TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred -eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 578888888887777 899999999999999999899999999999999964321
Q ss_pred ----eeecccccccceEE---EEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeecc-----CCc---cccEEEEEEec
Q 007229 182 ----FKLSHREHSNFVNC---IRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSE-----DGH---HGSIYAVSWSP 245 (612)
Q Consensus 182 ----~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~-----~~~---~~~v~~i~~~~ 245 (612)
.+...+.+...|.+ +.+..|...||+++. |+.|+|||++........... ..| .-.+.++....
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 01112234444555 556678889999888 999999999986655443211 012 34577777877
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
.|.+|++.+.|+.|.+|++... ...++..+.... ......-....+++..+++|+.+...++|.+...+.....+.+
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~--s~sP~~~~sg~~-~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G 358 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSL--SISPVAEFSGKL-NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG 358 (720)
T ss_pred CCCeEEEEecCCcEEEEecccc--CcCchhhccCcc-cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC
Confidence 8899999889999999999321 112222222111 0111122344566899999999999999999999999999999
Q ss_pred cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 326 HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
|...|+.++|.+..-.-+++++.|..+++|++..+-.
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 9999999999955567788889999999999965543
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.6e-24 Score=187.69 Aligned_cols=287 Identities=14% Similarity=0.168 Sum_probs=215.1
Q ss_pred CeEEEeecCCCceeeeeeeecC--CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce----eeeeccCCceEEEEE
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLS--GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCE 154 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~ 154 (612)
..+++||+...+. ...+..|. ..+.++.|+.... |++++..+.. .+..|....+ ...-+...+.-.|++
T Consensus 12 d~~kl~D~s~~~~-~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk---~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 12 DKTKLSDFSDLET-KSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDK---VMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred CceEEeecccccC-ccccccCCCCCcceeeeccccce-EEEeecCCce---eEEEecccCCCCccceeeccccchHHHHh
Confidence 3799999987652 22333332 3588999988765 6666655543 3444442222 111111222444555
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
......| +++|+..+.|+|||++...+.+.+++|...|+++.++....|||+++..|.|.|..+.++.....+. .+.
T Consensus 87 ~~s~S~y-~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~--~~s 163 (673)
T KOG4378|consen 87 CASQSLY-EISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT--IDS 163 (673)
T ss_pred hhhccee-eeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee--cCC
Confidence 5555564 9999999999999999888888899999999999999999999999999999999999999888883 233
Q ss_pred cccEEEEEEecCCCE-EEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 235 HGSIYAVSWSPDGKK-VLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
...+.-+.|+|..++ |.+++.+|.|.+||+ ....+..
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv----~g~sp~~-------------------------------------- 201 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDV----QGMSPIF-------------------------------------- 201 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEec----cCCCccc--------------------------------------
Confidence 456778999997665 556788899999998 4333332
Q ss_pred CCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEE
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVW 393 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~ 393 (612)
.....|..+...++|++.+..+|++.+.|..|.+||..........
T Consensus 202 -------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l--------------------------- 247 (673)
T KOG4378|consen 202 -------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL--------------------------- 247 (673)
T ss_pred -------chhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee---------------------------
Confidence 2334689999999999777899999999999999998754432211
Q ss_pred EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCe
Q 007229 394 RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGK 473 (612)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 473 (612)
....+.++++|+++|.+|+.|...|.
T Consensus 248 ------------------------------------------------------~y~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 248 ------------------------------------------------------TYSHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred ------------------------------------------------------eecCCcceeeecCCceEEEeecCCce
Confidence 11236788999999999999999999
Q ss_pred EEEEEccCcccccceeeccccCceEEEEEcCCC
Q 007229 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDV 506 (612)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (612)
|..||++..+ .++..+..|...|++++|-|..
T Consensus 274 ~i~YD~R~~k-~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTK-APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEecccCC-CCceEeeecccceeEEEeeecc
Confidence 9999998655 4578899999999999998764
No 152
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.1e-24 Score=191.33 Aligned_cols=292 Identities=17% Similarity=0.156 Sum_probs=227.6
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCC--EEEEeeCc------------
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGE--WIASADVS------------ 80 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~--~las~~~d------------ 80 (612)
.|++.|.+++..|.|.+||+|+ +|+|+||.+.+|.+++.+. -.+.|.|++|+|.+. .||++-..
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 5899999999999999999999 7999999999999999776 566999999999764 44444222
Q ss_pred --------------------CeEEEeecCCCcee---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 81 --------------------GSVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 81 --------------------~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
+.+..|.-...+++ ....-.|...|.++.|+..|.||++...++....+.|+.+...
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~ 556 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR 556 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc
Confidence 22334443322111 1244457889999999999999999988777767888888877
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+...-|....+.|.++.|+|...+ ++.++. ..|++||+..+++++.+......|..|+.+|.|..|+.++.|+.++.+
T Consensus 557 ~sQ~PF~kskG~vq~v~FHPs~p~-lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 557 KSQSPFRKSKGLVQRVKFHPSKPY-LFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWF 634 (733)
T ss_pred cccCchhhcCCceeEEEecCCCce-EEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence 777777778889999999999996 555543 469999999999888888888899999999999999999999999999
Q ss_pred ecCCCC-eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 218 DGKSGE-KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 218 d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+.-.. +.+.+ ..|...+++++|++.-.++++++.||++.++.- .-.. .+..
T Consensus 635 DldlsskPyk~l---r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg----~VY~---Dl~q----------------- 687 (733)
T KOG0650|consen 635 DLDLSSKPYKTL---RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG----MVYN---DLLQ----------------- 687 (733)
T ss_pred EcccCcchhHHh---hhhhhhhhhhhhccccceeeeecCCCcEEEEee----eeeh---hhhc-----------------
Confidence 998654 34444 479999999999999999999999999999864 1000 0000
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccc----eeEEEEEecCCcEEEEEecCCcEEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKN----VSTLTALKISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~~w 355 (612)
...-.++..+++|... |....|++. ..+|++++.||+|++|
T Consensus 688 -----------------npliVPlK~L~gH~~~~~~gVLd~~wHP~-qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 -----------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPR-QPWLFSAGADGTIRLF 732 (733)
T ss_pred -----------------CCceEeeeeccCceeecccceEeecccCC-CceEEecCCCceEEee
Confidence 0111234566777765 777778842 7899999999999998
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=1.7e-24 Score=177.56 Aligned_cols=266 Identities=17% Similarity=0.230 Sum_probs=191.9
Q ss_pred eccCCCceEEEEECC-----CCCEEEEeeCcCeEEEeecCCCc--eeeeeee--ecCCCeEEEEECCCC----CEEEEEe
Q 007229 55 YGEHGYPVTVARYSP-----NGEWIASADVSGSVRIWGTHNGF--VLKNEFK--VLSGRIDDLQWSPDG----LRIVACG 121 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~-----d~~~las~~~d~~i~iwd~~~~~--~~~~~~~--~~~~~i~~~~~s~~~----~~l~~~~ 121 (612)
.+.|..+|..++|.+ +-+.+|+++.+ .+.+|...... ++.+... .|......++|+-|. .+||++|
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999986 33567777654 78888877544 2222221 256678888887653 3677777
Q ss_pred CCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc---cccccceEEEEE
Q 007229 122 DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH---REHSNFVNCIRF 198 (612)
Q Consensus 122 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 198 (612)
..+ .|+|.+..+++....+.+|...|..+.|.|+.+.++++++.|.+||+|++++..++..+ .+|.+.|.++.|
T Consensus 113 ~~G---vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 113 YLG---VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred cee---EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 655 68888888999999999999999999999999889999999999999999999998875 579999999999
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCeeeee-------------------------eccCCccccEEEEEEecCCCEEEEE
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKIGEF-------------------------SSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
+++|.++++++.|.++++|++...+....+ ....-|...|-++.|. |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 999999999999999999999843321111 1122355556666665 5778887
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+-++.|..|.. ++.-..+...... +........+.-....++-+
T Consensus 268 scenaI~~w~p------gkl~e~~~~vkp~------------------------------es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 268 SCENAIVCWKP------GKLEESIHNVKPP------------------------------ESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred ccCceEEEEec------chhhhhhhccCCC------------------------------ccceeeeeEeccCccceEEE
Confidence 77888888876 2221111100000 00111223334455567777
Q ss_pred EEE-ecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 334 TAL-KISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 334 ~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
.|. +.-+++|+.|.+.|.+.+||++...+
T Consensus 312 rf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 312 RFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred EEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 777 66678888888889999888887654
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.9e-23 Score=169.83 Aligned_cols=267 Identities=16% Similarity=0.263 Sum_probs=194.0
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce---eeeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeeeE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV---LKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFV 129 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i 129 (612)
-.+|..-|.++.|.+.|+.+|+++.|++|+|||...... +....+.|.+.|..+.|.+ -|+.+|+++.|+ .+
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr---tv 85 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR---TV 85 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC---ce
Confidence 458999999999999999999999999999999754433 5557789999999999976 589999999999 35
Q ss_pred EEEEecC---------CceeeeeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCC------Ceeeeccc------
Q 007229 130 RAFMWDS---------GTTVGDFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPP------FKFKLSHR------ 187 (612)
Q Consensus 130 ~i~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~------~~~~~~~~------ 187 (612)
.||.-+. .....++......|+.+.|.|.. ...+++++.||.+|||+... ..++..++
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 6665531 12344566778899999999964 24699999999999997543 33333333
Q ss_pred -ccccceEEEEECCC---CCeEEEEEcC-----CcEEEEecCCCC-eeeeeeccCCccccEEEEEEecC----CCEEEEE
Q 007229 188 -EHSNFVNCIRFSPD---GSKLISVSSD-----RKGLIYDGKSGE-KIGEFSSEDGHHGSIYAVSWSPD----GKKVLTV 253 (612)
Q Consensus 188 -~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~ 253 (612)
.+..+..|+.|+|. ..+|+.|+.+ +.++||....+. .........+|..+|+.++|.|+ -..|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 46677899999974 4578877765 478899766543 44444334589999999999995 3478999
Q ss_pred eCCCcEEEEEeecCCCCCe-eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 254 SADKSAKVWEILEDGSGGR-VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
+.|| |+||++ .... .+..-.... ...-+ .-.-..+..+.+|...|..
T Consensus 246 ~kDg-v~I~~v----~~~~s~i~~ee~~~--------------------~~~~~-------~l~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 246 TKDG-VRIFKV----KVARSAIEEEEVLA--------------------PDLMT-------DLPVEKVSELDDHNGEVWR 293 (361)
T ss_pred ecCc-EEEEEE----eeccchhhhhcccC--------------------CCCcc-------ccceEEeeeccCCCCceEE
Confidence 9999 999999 3211 110000000 00000 0011223456789999999
Q ss_pred EEEE-ecCCcEEEEEecCCcEEEEEcC
Q 007229 333 LTAL-KISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 333 ~~~~-~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
+.|. . +..|.+.+.||.|++|...
T Consensus 294 v~wNmt--GtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 294 VRWNMT--GTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEeee--eeEEeecCCCceeeehhhh
Confidence 9999 7 8999999999999999654
No 155
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=176.60 Aligned_cols=406 Identities=15% Similarity=0.152 Sum_probs=253.2
Q ss_pred EEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcCeEEEeecCCCceeeeeeeec
Q 007229 23 LISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
-.+|||+|+++|++++..+.|.|.++-+..+.+. --..|.-+.|+.|.-+++. ...|+.|.+|++...+ -...+...
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecce-eEEEeccC
Confidence 4789999999999999999999999987766554 3567888999998876654 5788999999999887 44466777
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec-CC--eEEEEeCC
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE-DF--LVNFYEGP 178 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~ 178 (612)
+.++.+++|||||+.++..++-.- .+++|...+.+... ++-....+..++|+|+|++ .+.+++ |. .+.+...+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~l--riTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f-~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDL--RITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQF-CAILSRRDCKDYVQISSCK 166 (447)
T ss_pred CCcceeeeECCCcceEeeeeccee--EEEEEEeccceeEE-ecccccCceeEEECCCCce-eeeeecccHHHHHHHHhhH
Confidence 889999999999998888776553 35666666554432 2323345688999999996 555543 32 22222233
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS 258 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 258 (612)
....+..+.-.+-..+.+.|+|||+.|++ ||.--.-.+..+ ...-.+..++|+|.+++|++|+.|+.
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY----e~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY----ERGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee----eeccceeEEEeccccceEEeeccchh
Confidence 34444555555667889999999988775 442211112222 22346889999999999999999999
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI 338 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (612)
+++.+- -+-+....|..... -.+....+.. . .....-.....++.|.+
T Consensus 234 lrvlnh----~tWk~f~eflhl~s--------------------~~dp~~~~~~-k------e~~~~~ql~~~cLsf~p- 281 (447)
T KOG4497|consen 234 LRVLNH----FTWKPFGEFLHLCS--------------------YHDPTLHLLE-K------ETFSIVQLLHHCLSFTP- 281 (447)
T ss_pred hhhhce----eeeeehhhhccchh--------------------ccCchhhhhh-h------hhcchhhhcccccccCC-
Confidence 998775 33333322211100 0000000000 0 00000000111222221
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceee
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLS 418 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (612)
.+ -...+|..... +|.... .+. +
T Consensus 282 -~~--------~~a~~~~~se~---------------------------------~YE~~~-------------~pv--~ 304 (447)
T KOG4497|consen 282 -TD--------LEAHIWEESET---------------------------------IYEQQM-------------TPV--K 304 (447)
T ss_pred -Cc--------cccCccccchh---------------------------------hhhhhh-------------cce--e
Confidence 00 00111110000 000000 000 0
Q ss_pred ecCCCCcEEEEEeeccEEEeecccceee-ecccceEEEEEEccCCCeEEEEecC--CeEEEEEccCcccccceeeccccC
Q 007229 419 LALSSPELALVSTESGVILLDSLKVMSK-IDLGFTVTACAIAPDGSEAIVGGQN--GKLHIYSISGNTLTEEMVLEKHRG 495 (612)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~ 495 (612)
+...++... ......+.-++||+|..++++-... +.+.+||++..++ ...-....
T Consensus 305 -------------------~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l---~avLiQk~ 362 (447)
T KOG4497|consen 305 -------------------VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL---HAVLIQKH 362 (447)
T ss_pred -------------------eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh---hhhhhhcc
Confidence 000000000 0123357779999999999986544 5799999998776 33333456
Q ss_pred ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcE
Q 007229 496 AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTC 560 (612)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~ 560 (612)
+|....|.|....|+.+.....+++|.......+.. ....-.|..+.|..+|..++..+.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v--P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV--PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec--CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999998888888778899999887665532 223467999999999999999999873
No 156
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.93 E-value=3.2e-23 Score=181.48 Aligned_cols=436 Identities=15% Similarity=0.215 Sum_probs=267.8
Q ss_pred EEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEEC
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWS 111 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 111 (612)
++++.+||.+.|.+ +.++..+.+..|.+.|.|-.|+|||.-|++++.||.|++|.-..- +...+.....+|+|++|.
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARWA 154 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEEC
Confidence 44555588888876 446777778999999999999999999999999999999986654 556667778899999999
Q ss_pred CCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc
Q 007229 112 PDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN 191 (612)
Q Consensus 112 ~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 191 (612)
|++..++.+..+. +.|........+-..+.|.+-|.++.|+|..+ ++++|++|-..++||.. |..+..-..|+.
T Consensus 155 p~S~~vl~c~g~h----~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 155 PNSNSIVFCQGGH----ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-GANLFTSAAEEY 228 (737)
T ss_pred CCCCceEEecCCe----EEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc-CcccccCChhcc
Confidence 9999998887775 56777777778888999999999999999998 79999999999999965 555666678999
Q ss_pred ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC
Q 007229 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG 271 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 271 (612)
+|++++|.|+ +.++.++. ++++ + .....+.|..++|++||..++.|+..|.+.+=.+. ..
T Consensus 229 ~ITSva~npd-~~~~v~S~-nt~R------------~--~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~i----eq 288 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSY-NTAR------------F--SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAI----EQ 288 (737)
T ss_pred ceeeeeeccc-cceeeeee-eeee------------e--cCCCccceEEEEEcCCCceeeccccCceEEEeeee----hh
Confidence 9999999999 55555553 4454 2 22567889999999999999999998887654431 11
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 351 (612)
+... .+.-++......|.+-|+.+.-. ..-.....+......- ..|+++. ...
T Consensus 289 ~l~~--------------------~n~~~t~~~r~~I~vrdV~~~v~---d~LE~p~rv~k~sL~Y---~hLvvaT-s~q 341 (737)
T KOG1524|consen 289 QLVS--------------------GNLKATSKSRKSITVRDVATGVQ---DILEFPQRVVKFSLGY---GHLVVAT-SLQ 341 (737)
T ss_pred hhhh--------------------ccceeEeeccceEEeehhhhhHH---HHhhCccceeeeeece---eEEEEEe-ccE
Confidence 1000 00111111122222222221111 1111222333333322 2333322 134
Q ss_pred EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST 431 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
+++|.-.....+.........+. +...++..+.......+.++....
T Consensus 342 vyiys~knwntpiiidgre~tr~-lieq~ek~fli~dgsSi~lytyeg-------------------------------- 388 (737)
T KOG1524|consen 342 VYIYSEKNWNTPIIIDGREDTRN-LIEQGEKYFLILDGSSIWLYTYEG-------------------------------- 388 (737)
T ss_pred EEEEecCCccCcEEEeccccchh-HhhhhhhheEEecCcEEEEEEecC--------------------------------
Confidence 55555443322211110110000 000111111111122222222211
Q ss_pred eccEEEeecccceeeecccce----EEEEEEccCCCeEEEE--ecCCeEEEEEc-cCcccccceeeccccCceEEEEEcC
Q 007229 432 ESGVILLDSLKVMSKIDLGFT----VTACAIAPDGSEAIVG--GQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~----i~~~~~s~~~~~l~~~--~~dg~v~i~d~-~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
+.......++. .+.-.+|-....|+.- .....+++||. .+++...-..+-.|...|..++...
T Consensus 389 ----------R~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldq 458 (737)
T KOG1524|consen 389 ----------RLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQ 458 (737)
T ss_pred ----------ceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhc
Confidence 11111111100 0000111112234432 22346788888 7776544444445777777777654
Q ss_pred ----CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 505 ----DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 505 ----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+.+.+|.-+.++.+.|=..++.....+.+. -...|..++|+..- -+.+|-.|+++.||-++.
T Consensus 459 kG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~K-iGTmVhtLawndtt-NiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 459 KGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYK-IGTMVHTLAWNDTT-NILCGLQDTCFSVWYYPN 524 (737)
T ss_pred cCCCccceEEEEecCCcEEEEeehhcCchhhhhh-hhhhhhhhhhcccc-ceeeeeccceEEEEEcCC
Confidence 667888888888888877765443322222 45678899998554 466788999999998876
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.93 E-value=2.2e-23 Score=176.07 Aligned_cols=165 Identities=22% Similarity=0.313 Sum_probs=128.7
Q ss_pred CCceEEEEECCCCC-EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 59 GYPVTVARYSPNGE-WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 59 ~~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
..+|..+.|.++.. .||||+.|..|+||.+.....-. ....+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------~~~~V----------------------------- 55 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------GDMKV----------------------------- 55 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------CceeE-----------------------------
Confidence 56889999999776 99999999999999987654210 00000
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--------C--------CeeeecccccccceEEEEECCC
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--------P--------FKFKLSHREHSNFVNCIRFSPD 201 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--------~--------~~~~~~~~~~~~~v~~~~~s~~ 201 (612)
+-+..+..|...|+++.|+|+|. +|++|+.+|.|.+|... + ......+.+|...|..++|+|+
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 01223455667777777777776 57777777777777543 1 2334557789999999999999
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
++++++++.|..+++||+..|+....+ ..|...+..++|.|-++++++-+.|...+.+.+
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~---~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAIL---DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeec---cccccccceeecchhhhhhhhhccCcccceeee
Confidence 999999999999999999999999888 589999999999999999999999987777776
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.9e-24 Score=184.15 Aligned_cols=236 Identities=16% Similarity=0.206 Sum_probs=192.6
Q ss_pred ceeEEEEccCCCEEEEec---CCEEEEEeCCC--CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 20 RGILISGNPKTDTILYCN---GRSVLIRYLDK--PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.+.++.|+.... |++++ +..+++|.-.. ++....-......-.|++......|+++|+..+.|+|||++... +
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL-I 113 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH-H
Confidence 488899988776 44443 56888886543 23332211122244566666666999999999999999999554 6
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
.+.++.|+..|+++.+.....|||+++..++ |.|....++.....|... ...|.-+.|+|..+++|.+++.+|.|.
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd---iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGD---IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCc---EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 7789999999999999999999999998884 566666677777777654 456779999999999999999999999
Q ss_pred EEeCCCCeeeec-ccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 174 FYEGPPFKFKLS-HREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 174 ~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
+||+....++.. ...|..+...++|+|.. .+|++.+.|..|.+||.........+ ....+...++|.++|.+|+
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l----~y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL----TYSHPLSTVAFSECGTYLC 266 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee----eecCCcceeeecCCceEEE
Confidence 999998887776 56799999999999954 57788999999999999988887777 6778999999999999999
Q ss_pred EEeCCCcEEEEEe
Q 007229 252 TVSADKSAKVWEI 264 (612)
Q Consensus 252 ~~~~dg~i~iw~~ 264 (612)
.|...|.|..||+
T Consensus 267 aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 267 AGNSKGELIAYDM 279 (673)
T ss_pred eecCCceEEEEec
Confidence 9999999999999
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=180.30 Aligned_cols=305 Identities=15% Similarity=0.133 Sum_probs=223.3
Q ss_pred CceeeeeccCCceEEEEEEcCCCC-EEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECCC-CCeEEEEEc
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRP-FRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSPD-GSKLISVSS 210 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 210 (612)
-......+-+.++|++++|+|..+ .++++|...|.|-+||+.+.+ -+..+..|..+|.+|.|+|. ...+++.+.
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 334445667889999999999876 689999999999999995332 23446789999999999994 468899999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
||+|+.-|++.+.....+.. ......+..+.|+.+...++.+..=|.+.+||.+
T Consensus 256 DGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R------------------------- 309 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR------------------------- 309 (498)
T ss_pred CceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEee-------------------------
Confidence 99999999987654444421 1344567778888877778878777788888883
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
..+.....+.-|...|..+++.+....++++++.|++.++||++.-.....
T Consensus 310 ------------------------~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----- 360 (498)
T KOG4328|consen 310 ------------------------TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----- 360 (498)
T ss_pred ------------------------cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----
Confidence 222223344557789999999977789999999999999999875432111
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
..+..++|.
T Consensus 361 -----------------------------------------------------------------------p~lst~~Hr 369 (498)
T KOG4328|consen 361 -----------------------------------------------------------------------PFLSTLPHR 369 (498)
T ss_pred -----------------------------------------------------------------------cceeccccc
Confidence 023445567
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEcc--CcccccceeeccccC------ceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSIS--GNTLTEEMVLEKHRG------AITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
..|.+..|||++..|++.+.|..|+|||.. +....+...+. |+. .....+|.|+..++++|-.-..|-|+|
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 789999999998889999999999999984 11111122222 221 133458999999999999999999999
Q ss_pred cCCcceeeecccccccceeE-EEecCCCcEEE-EeecCcEEEEEEccC
Q 007229 523 RVSKEVKLNNMLFHTARINC-LAWSPSSTMVA-TGSIDTCVIIYEIGK 568 (612)
Q Consensus 523 ~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~-s~~~d~~i~iwd~~~ 568 (612)
-..++.+.+........|.+ ..|+|-+..++ -++..|.|+||--+.
T Consensus 449 ~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 449 GNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred CCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 99998765544434445555 47999877454 445678888886543
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.93 E-value=1.3e-20 Score=184.79 Aligned_cols=371 Identities=24% Similarity=0.386 Sum_probs=283.0
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc-eeeEeccCC-CceEEEEE-CCCCC-EEEEeeC-cCeEEEeec
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL-HVEFYGEHG-YPVTVARY-SPNGE-WIASADV-SGSVRIWGT 88 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~-~~~~~~~h~-~~v~~~~~-s~d~~-~las~~~-d~~i~iwd~ 88 (612)
..+...+.++.+.+.+..++.++ ++.+.+|+...+. ....+.++. ..+..+.+ ++++. +++..+. |+.+.+||.
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 35678999999999999999987 8999999999886 666676644 37888888 88888 5555444 999999999
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeC-CCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD-GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
.........+..|...|..++|+|+++.+++++. ++ .+.+|....+..+..+.+|...|.+++|+|+++.++++++
T Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG---TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred cCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCC---ceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9822266688999999999999999998888875 54 4566666677899999999999999999999985466669
Q ss_pred cCCeEEEEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe-eeeeeccCCccccEEEEEEec
Q 007229 168 EDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK-IGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~i~~~~ 245 (612)
.|+.|++||...+.... .+.+|.... ...|+|++.++++++.|+.+++|+...... ...+ ..|...+.++.|.|
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 294 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSP 294 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECC
Confidence 99999999999888877 688888875 448999998899999999999999987765 3333 37789999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
++..+++++.|+.+.+|+. .......... ...
T Consensus 295 ~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~--------------------------------------------~~~ 326 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDL----ETGKLLSSLT--------------------------------------------LKG 326 (466)
T ss_pred CCCEEEEeeCCCcEEEEEc----CCCceEEEee--------------------------------------------ecc
Confidence 8888888888988999987 4444433322 123
Q ss_pred cccceeEEEEEecCCcEEEEE-ecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCc
Q 007229 326 HVKNVSTLTALKISQQTILSS-SYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGD 404 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 404 (612)
|...+..+.+ ..+...++.+ ..|+.+.+|+..........
T Consensus 327 ~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------------------------------- 367 (466)
T COG2319 327 HEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL-------------------------------------- 367 (466)
T ss_pred cCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEe--------------------------------------
Confidence 4556677777 4322444444 67788888877655410000
Q ss_pred cceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE-EecCCeEEEEEccCcc
Q 007229 405 AEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV-GGQNGKLHIYSISGNT 483 (612)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~ 483 (612)
.....+..+.+++ ...... +..++.+.+|+.....
T Consensus 368 -------------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 368 -------------------------------------------EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred -------------------------------------------cCCceEEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence 0001156677777 433333 6888999999998776
Q ss_pred cccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCC
Q 007229 484 LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 525 (612)
. ......+...+....+++++..++.++.++.+++|+..+
T Consensus 404 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 404 L--LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred e--eeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5 222322227899999999999999999999999999988
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=4.3e-22 Score=179.34 Aligned_cols=274 Identities=15% Similarity=0.212 Sum_probs=201.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK 183 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 183 (612)
.|..++|-|||..|+.+..+. +.+++.+.|..+.++++|.+.|.+++|+.+|+ ++++|+.|+.|.+|+.+-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r----lliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR----LLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCCE----EEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCceeEEEeccccccee
Confidence 789999999999998888775 66778889999999999999999999999999 6999999999999986543322
Q ss_pred ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 184 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
+ -.|.+.|.||.|+|-...|++++- ...-+|..+... +... .....+.+.+|..||++++.|-.+|+|.+=+
T Consensus 89 k--YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~----kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 89 K--YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKH----KSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred e--eccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhh----hhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 2 258999999999999999998875 457789865433 3333 4556788999999999999999999998876
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec----C
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI----S 339 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~ 339 (612)
- .++..-.++ ...+.+.+|.+++|++. .
T Consensus 161 k-----~gEek~~I~-------------------------------------------Rpgg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 161 K-----NGEEKVKIE-------------------------------------------RPGGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred C-----CCCcceEEe-------------------------------------------CCCCCCCCceEEEecCCCCCCc
Confidence 4 333322222 12246678888888732 2
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCccee
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDL 417 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (612)
.+.++...+..++.++.+.....-.... ..-...|+.+ ++++++.|+.|+.+.++...
T Consensus 193 ~di~aV~DW~qTLSFy~LsG~~Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~------------------- 252 (1081)
T KOG1538|consen 193 NDILAVADWGQTLSFYQLSGKQIGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD------------------- 252 (1081)
T ss_pred cceEEEEeccceeEEEEecceeeccccc-CCCCchhheeccCCcEEEEccCCCceEEEeec-------------------
Confidence 3567777777777777766543322211 2333444544 66677777777666665421
Q ss_pred eecCCCCcEEEEEeeccEEEeecccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccC
Q 007229 418 SLALSSPELALVSTESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG 481 (612)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 481 (612)
+-.+.+.. ....|..++..|++++++.|+.||+|-.|++..
T Consensus 253 -----------------------GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 253 -----------------------GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -----------------------CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 12222221 456799999999999999999999999998753
No 162
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-21 Score=178.45 Aligned_cols=545 Identities=15% Similarity=0.124 Sum_probs=338.4
Q ss_pred eeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCC------------CEEE
Q 007229 8 ETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG------------EWIA 75 (612)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~------------~~la 75 (612)
.+.+++|. +..-.++.|+|.| +||||+++.|.+.|..+.+.++.++.|...|+.+.|.|-. -+||
T Consensus 7 ~tlpG~l~--~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 7 HTLPGPLS--RSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred ccCCCCCC--cccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEE
Confidence 45666664 4457899999988 8999999999999999999999999999999999998831 2688
Q ss_pred EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECC---CCC-EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEE
Q 007229 76 SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP---DGL-RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVL 151 (612)
Q Consensus 76 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~---~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~ 151 (612)
++...|.|.+||...+. ....+..|..++..++|-| +.+ .|++..... ++.+|+-++|+++...........
T Consensus 84 saD~~GrIil~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss---~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS---TLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred eccccCcEEEEEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCc---EEEEEEccCCceeeccccCCccee
Confidence 89999999999999887 4557888999999999976 443 444444433 577888889999999998888999
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCC-------CCeeeeccccccc-------------------------ceEEEEEC
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGP-------PFKFKLSHREHSN-------------------------FVNCIRFS 199 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~-------~~~~~~~~~~~~~-------------------------~v~~~~~s 199 (612)
|+.+.|-+...+..-+..|.+.+-+.- .++..+.-..|.+ ....++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 999999665456666666666665421 1222221112221 01235678
Q ss_pred CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC--CEEEEEeCCCcEEEEEeecCCCC-------
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG--KKVLTVSADKSAKVWEILEDGSG------- 270 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~------- 270 (612)
|.-+.++.......+.++|++-..++.....+ .+.+.-+.+.|++ ..|++.-.||.+.+|-.......
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l~vvpie---r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~ 316 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCLAVVPIE---RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNAS 316 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhceeEEEEec---cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchh
Confidence 87666666777889999999999998888533 3445556666654 56888999999999986321111
Q ss_pred -----CeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEEEEEcCCCCCCc------------------------
Q 007229 271 -----GRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSASNLDKAP------------------------ 320 (612)
Q Consensus 271 -----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~------------------------ 320 (612)
+.....+... +.....+..++.. ...+...-.+|...+|.+..+....
T Consensus 317 l~~dl~~Q~~~vr~m--~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k 394 (1062)
T KOG1912|consen 317 LSMDLGEQVHVVRPM--EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGK 394 (1062)
T ss_pred hccccccceEEEeec--hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhh
Confidence 1111111110 1111122222222 4445555566777777665321110
Q ss_pred ------eeecCcccceeEEEEE----------ecC-------CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 321 ------LSFSGHVKNVSTLTAL----------KIS-------QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 321 ------~~~~~~~~~v~~~~~~----------~~~-------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
..-.+|....++.... ++. -.+++.|+..|+|.++|+.++.....+..|...|.++.
T Consensus 395 ~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vkgle 474 (1062)
T KOG1912|consen 395 TSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLE 474 (1062)
T ss_pred ccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeee
Confidence 0001233333222211 111 13677899999999999999988888888999999999
Q ss_pred eec-cEEEEecCC----------CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccccee-
Q 007229 378 AVE-EVIFTAGFD----------NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMS- 445 (612)
Q Consensus 378 ~~~-~~l~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 445 (612)
+-+ ..+++.+.. +.+.+-|++++... ..+
T Consensus 475 W~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk---------------------------------------~fR~ 515 (1062)
T KOG1912|consen 475 WLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK---------------------------------------RFRG 515 (1062)
T ss_pred eccceeEEEeeeccccccccceeeeEEEEEccccccc---------------------------------------cccc
Confidence 944 345444332 24455555554422 111
Q ss_pred -eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee------------eccc-------------------
Q 007229 446 -KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV------------LEKH------------------- 493 (612)
Q Consensus 446 -~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~------------~~~~------------------- 493 (612)
..+...+|+.+..|..++||++...+.-+.+||+++..+..... +..|
T Consensus 516 l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~v 595 (1062)
T KOG1912|consen 516 LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLV 595 (1062)
T ss_pred CCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhcee
Confidence 11245679999999999999999999999999996543311000 0000
Q ss_pred -----cCceEE---------------------------EEEcCCCcEEEEEcCCCeEEEEecCCcceeeec-ccccccce
Q 007229 494 -----RGAITV---------------------------IQYSPDVSMFASADGNREAIVWDRVSKEVKLNN-MLFHTARI 540 (612)
Q Consensus 494 -----~~~i~~---------------------------~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i 540 (612)
...+.. |+| .+..|+.|+.+|.+.+||+...+..... ...|....
T Consensus 596 v~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~ 673 (1062)
T KOG1912|consen 596 VLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHS 673 (1062)
T ss_pred eeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhhh
Confidence 011111 122 2457899999999999998665443111 11122233
Q ss_pred eEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc--CeeeEEEecCceEEEccCCCeEEEEEe
Q 007229 541 NCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG--GVYGVAFMDDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 541 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~l~s~~~d~~i~~w~~ 609 (612)
.-..+-|....+++--.|+ +-+||.+. . ..+..+.+... .+..+.++....++.. .|+++|+-.+
T Consensus 674 l~~~~ipG~~~~lvl~~d~-~~lwdtk~-~-~lV~siag~dssfrlldvdlc~~~~~~l~-~d~~~Rf~~m 740 (1062)
T KOG1912|consen 674 LTFPQIPGDHTTLVLELDW-LPLWDTKA-D-TLVLSIAGMDSSFRLLDVDLCEKSPLVLP-NDNKERFRVM 740 (1062)
T ss_pred eecccCCCCceEEEEecCc-ceeccccc-c-eeeeeeccCCcceEEEEEEecccCceecC-CCCceeEEec
Confidence 3334445322333444455 88898877 4 45555544444 3444444422223322 2336665443
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=2.4e-20 Score=182.95 Aligned_cols=373 Identities=25% Similarity=0.419 Sum_probs=279.4
Q ss_pred EeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-CCeEEEEE-CCCCC-EEEEEeC-CCCeeeE
Q 007229 54 FYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-GRIDDLQW-SPDGL-RIVACGD-GKGKSFV 129 (612)
Q Consensus 54 ~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~-s~~~~-~l~~~~~-~~~~~~i 129 (612)
.+..|...+.++.+.+++..++.++.|+.+.+|+..........+..+. ..+..+.+ ++++. .++..+. ++ .+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG---TV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCc---cE
Confidence 4668999999999999999999999999999999998863333444433 37777777 88888 4444444 33 45
Q ss_pred EEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeec-CCeEEEEeCCCCeeeecccccccceEEEEECCCCC-eEE
Q 007229 130 RAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE-DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS-KLI 206 (612)
Q Consensus 130 ~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 206 (612)
.+|+... ......+..|...|..++|+|++. .++.++. |+.+++|+...+.....+.+|...|.+++|+|++. .++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 6666666 788899999999999999999999 4777775 99999999999888888889999999999999998 555
Q ss_pred EEEcCCcEEEEecCCCCeee-eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee-EeeeeccCccc
Q 007229 207 SVSSDRKGLIYDGKSGEKIG-EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV-IKTFASSTSNA 284 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~ 284 (612)
+++.|+.+++||...+.... .+ ..|.... ...|+|++.++++++.|+.+++|+. ..... ...
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~-------- 279 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTL---SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL----RSSSSLLRT-------- 279 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeec---CCCCcce-eEeECCCCCEEEEecCCCcEEEeee----cCCCcEEEE--------
Confidence 55899999999988777776 34 3666664 3389999988999999999999998 33222 111
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
..+|...+.++.+.+ .+..+++++.|+.+.+|+........
T Consensus 280 --------------------------------------~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 280 --------------------------------------LSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred --------------------------------------EecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 134667778887764 36677778888889999776654332
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
...
T Consensus 321 ~~~----------------------------------------------------------------------------- 323 (466)
T COG2319 321 SLT----------------------------------------------------------------------------- 323 (466)
T ss_pred Eee-----------------------------------------------------------------------------
Confidence 211
Q ss_pred eeecccceEEEEEEccCCCeEEEE-ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEE-EcCCCeEEEEe
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVG-GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS-ADGNREAIVWD 522 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~iwd 522 (612)
...+...+..+.+.+++..++.+ ..|+.+.+|+...... ........ .+..+.+++ ...... +..++.+.+|+
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 324 -LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP--LKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred -ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce--eEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 00111236667773333455555 6788899999987762 22222222 288899998 544444 68899999999
Q ss_pred cCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 523 RVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 523 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
............ +...+....+++++..+++++.++.+++|+...
T Consensus 399 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 399 LSTGSLLRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cccCeeeeeccC-CCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 999888644333 227899999999999999999999999999886
No 164
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.92 E-value=5.7e-22 Score=173.77 Aligned_cols=230 Identities=14% Similarity=0.179 Sum_probs=171.0
Q ss_pred CCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceE-EEEECC-------CCCEEEEeeCcCeEEEee
Q 007229 16 TERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVT-VARYSP-------NGEWIASADVSGSVRIWG 87 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~-~~~~s~-------d~~~las~~~d~~i~iwd 87 (612)
.+...++|+.|+.....+.++.|..+.+|+-.+......+.-...-|. .+-.-+ ....++.++.||.+.|-+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 566788999999999988888898888886554333332222221111 111111 224688888999998876
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
-... +......|.+.+.+-.|+|||.-|+++|+|+ .|..|. +|-.-.++-....+|+|++|.|+.+.++.+.
T Consensus 92 k~~r--VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 92 KSAR--VERSISAHAAAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred ccch--hhhhhhhhhhhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 5544 5668889999999999999999999999998 455666 4444445666778999999999998755555
Q ss_pred ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC
Q 007229 167 GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
+ +.+.+=-+.....+...+.|.+-|.++.|++..+.+++|++|-..+|||. .|+.+..- ..|..+|++++|.|+
T Consensus 165 g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S---~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 165 G--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTS---AAEEYAITSVAFNPE 238 (737)
T ss_pred C--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccC---Chhccceeeeeeccc
Confidence 4 34555556666666678899999999999999999999999999999995 46666555 389999999999999
Q ss_pred CCEEEEEeCCCcEE
Q 007229 247 GKKVLTVSADKSAK 260 (612)
Q Consensus 247 ~~~l~~~~~dg~i~ 260 (612)
+.++.++.. +++
T Consensus 239 -~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 239 -KDYLLWSYN-TAR 250 (737)
T ss_pred -cceeeeeee-eee
Confidence 556666543 444
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-22 Score=173.94 Aligned_cols=283 Identities=17% Similarity=0.183 Sum_probs=206.5
Q ss_pred EEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecC----CCeEEEEECC-------CCCEEEEEeCCCCeee
Q 007229 63 TVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLS----GRIDDLQWSP-------DGLRIVACGDGKGKSF 128 (612)
Q Consensus 63 ~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~s~-------~~~~l~~~~~~~~~~~ 128 (612)
..+.+-|...+|+.+-.+ ..+.+|=....+. ..+..|. ....|++|.. -|+++|.|..+. .
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~--nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp---~ 203 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE--NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDP---E 203 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc--ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCc---e
Confidence 355667766677766422 3344444443331 1222232 2335666643 367999998888 5
Q ss_pred EEEEEecCCc---eeee------------------eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc
Q 007229 129 VRAFMWDSGT---TVGD------------------FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR 187 (612)
Q Consensus 129 i~i~~~~~~~---~~~~------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 187 (612)
|.||+.+-.. +... -.+|++.|.+++|+..-+.+||+|+.|.+|++||+.++++..++.
T Consensus 204 IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~ 283 (463)
T KOG0270|consen 204 IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT 283 (463)
T ss_pred eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence 7888877211 1111 236999999999999888899999999999999999999999999
Q ss_pred ccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCee-eeeeccCCccccEEEEEEecCC-CEEEEEeCCCcEEEEEe
Q 007229 188 EHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKI-GEFSSEDGHHGSIYAVSWSPDG-KKVLTVSADKSAKVWEI 264 (612)
Q Consensus 188 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~ 264 (612)
.|...|.+++|+|. ..+|++|+.|+++.+.|.+..... ..+ ...+.|..++|.|.. ..++++..||+++-+|+
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeec
Confidence 99999999999995 568999999999999999853222 222 456789999999854 45667778899999988
Q ss_pred ecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 265 LEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
+...+++..+..|..+|.++.++.....+++
T Consensus 360 -------------------------------------------------R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 360 -------------------------------------------------RNPGKPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred -------------------------------------------------CCCCCceeEEEeccCCcceEEecCCCCccee
Confidence 4445566777889999999999966689999
Q ss_pred EEecCCcEEEEEcCCceeeeecee--cccceEEEEe---eccEEEEecCCCeEEEEecCCCCCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKK--YDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
+++.|+.+++|++........... .-+...|.++ ....++.++..+.+++||+.+....
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999999999999876655333221 2234556666 3457888888889999999877643
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=175.23 Aligned_cols=163 Identities=19% Similarity=0.350 Sum_probs=136.6
Q ss_pred ccceEEEEEEccC-CCeEEEEecCCeEEEEEccCcccc-cceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCC
Q 007229 449 LGFTVTACAIAPD-GSEAIVGGQNGKLHIYSISGNTLT-EEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 449 ~~~~i~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~ 525 (612)
|+..-..++|||- ...|++|.--+.|++|...++... -...+.+|+..|-.|+||| ....+|+++.||+|+|||++.
T Consensus 210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 5556788999992 234788888889999999887652 2345677999999999999 456899999999999999998
Q ss_pred cce-eeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC--CCcceeeeecccccCeeeEEEe--cCceEEEccC
Q 007229 526 KEV-KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK--PASSRITIKNAHLGGVYGVAFM--DDFNVVSSGE 600 (612)
Q Consensus 526 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~~~ 600 (612)
+.. .......|.+.|+.|.|+.+-.+||+|++||+++|||++. .+ +.+..++.|..+|++|.|+ +...|+++|.
T Consensus 290 ~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 290 GPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred CCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 832 1123477999999999999888999999999999999986 34 6788999999999999999 6777999999
Q ss_pred CCeEEEEEeccC
Q 007229 601 DACIRVWRLATE 612 (612)
Q Consensus 601 d~~i~~w~~~~~ 612 (612)
|.+|.+||+..|
T Consensus 369 D~QitiWDlsvE 380 (440)
T KOG0302|consen 369 DNQITIWDLSVE 380 (440)
T ss_pred CCcEEEEEeecc
Confidence 999999999754
No 167
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=5.4e-23 Score=171.96 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=159.5
Q ss_pred eccCCCceEEEEECCCC--CEEEEeeCcCeEEEeecCCCc---------------eeeeeeeecCCCeEEEEECCCCC-E
Q 007229 55 YGEHGYPVTVARYSPNG--EWIASADVSGSVRIWGTHNGF---------------VLKNEFKVLSGRIDDLQWSPDGL-R 116 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~--~~las~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~i~~~~~s~~~~-~ 116 (612)
..+|.+.++.+.-++-| .+.|+=+..|.|.|||+...- .....+.+|.+.=+.++|||--. .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 44688888888888855 566677899999999975321 13346778998999999999322 3
Q ss_pred EEEEeCCCCeeeEEEEEecCCc---eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC---eeeecccccc
Q 007229 117 IVACGDGKGKSFVRAFMWDSGT---TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF---KFKLSHREHS 190 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~ 190 (612)
|+++.... .|.+|...++. -...|.+|+..|..++|||....++++|+-||+|+|||++.+ .++. .+.|.
T Consensus 227 LlsGDc~~---~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~ 302 (440)
T KOG0302|consen 227 LLSGDCVK---GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHN 302 (440)
T ss_pred cccCcccc---ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccC
Confidence 55444333 23444433433 223467899999999999998889999999999999999988 3333 37899
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCC---CCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEee
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS---GEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~ 265 (612)
..|+.+.|+.+..+||+|+.||+++|||++. ++++..+ +.|..+|+++.|+| +...|++++.|.+|.+||+.
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f---k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF---KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE---EeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999999888999999999999999976 4455566 58999999999999 45678888899999999994
No 168
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1e-24 Score=197.72 Aligned_cols=223 Identities=17% Similarity=0.297 Sum_probs=200.7
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEE
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 117 (612)
...+++||... +..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++...|
T Consensus 13 ~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 13 ATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-SLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred eeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-eeeccCCcceeeecCcchhhh
Confidence 34555666443 55789999999997888999999999999999998776444 589999999999999999999
Q ss_pred EEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEE
Q 007229 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIR 197 (612)
Q Consensus 118 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 197 (612)
++++.++ .|++|++..++.++++.+|...+.++.|+|-+.| .+.|+.|+.+++||.+...+.+.+.+|...+..+.
T Consensus 86 aagsasg---tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 86 AAGSASG---TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred cccccCC---ceeeeehhhhhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 9999888 6889999999999999999999999999999996 79999999999999999999999999999999999
Q ss_pred ECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeee
Q 007229 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277 (612)
Q Consensus 198 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 277 (612)
|+|+|++++.+++|.+++|||+..|+...+| ..|.+.+.++.|+|..-+++.|+.|+++++||+ ++.+.+...
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef---~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl----etfe~I~s~ 234 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEF---KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL----ETFEVISSG 234 (825)
T ss_pred ecCCCceeeccCCcceeeeeccccccccccc---ccccccccccccCchhhhhccCCCCceeeeecc----ceeEEeecc
Confidence 9999999999999999999999999999999 479999999999999999999999999999999 766666544
Q ss_pred e
Q 007229 278 A 278 (612)
Q Consensus 278 ~ 278 (612)
.
T Consensus 235 ~ 235 (825)
T KOG0267|consen 235 K 235 (825)
T ss_pred C
Confidence 3
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=7e-22 Score=167.14 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=136.0
Q ss_pred CCceeEEEEccCCC-EEEEec-CCEEEEEeCCCCc---------eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEe
Q 007229 18 RGRGILISGNPKTD-TILYCN-GRSVLIRYLDKPL---------HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIW 86 (612)
Q Consensus 18 ~~~v~~~~~s~d~~-~l~~~~-~~~i~i~~~~~~~---------~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iw 86 (612)
...+..+.|.+... .||+++ |..|+||-++.++ .+..|..|...|+++.|+|+|.+||+|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35788999999887 999988 8999999876432 234578899999999999999999999999999999
Q ss_pred ecC--------C-----Cc--eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEE
Q 007229 87 GTH--------N-----GF--VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVL 151 (612)
Q Consensus 87 d~~--------~-----~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~ 151 (612)
... + .+ .....+.+|...|..++|+||+.++++++-++ .+++|+...|.....+..|...|.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn---s~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN---SVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc---eEEEEEeccceeEeeccccccccc
Confidence 876 2 11 15567788999999999999999999999888 467888889999999999999999
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCCCCee
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 182 (612)
.++|.|-++| +++-+.|...+.+.+...+.
T Consensus 170 gvawDpl~qy-v~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 170 GVAWDPLNQY-VASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred eeecchhhhh-hhhhccCcccceeeeeeeee
Confidence 9999999996 99988888666666554443
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.8e-21 Score=159.65 Aligned_cols=281 Identities=17% Similarity=0.289 Sum_probs=201.6
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe------------eeeeeccCCccccEEEEEEe-------cCCCEEE
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK------------IGEFSSEDGHHGSIYAVSWS-------PDGKKVL 251 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~v~~i~~~-------~~~~~l~ 251 (612)
.-...+.|+|||..|++-+.|..+.+|++...-. ...+ .-.....|...+|- |+..+++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~--r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSY--RYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeE--EeccCCEEEEEEeeeccccCCCccceee
Confidence 3355678999999999999999999999753110 0011 01334567777775 5678899
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc---
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--- 328 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--- 328 (612)
+.+.+.-|++||. -+++....+.... |..
T Consensus 128 ~ssr~~PIh~wda----ftG~lraSy~~yd--------------------------------------------h~de~t 159 (406)
T KOG2919|consen 128 VSSRDQPIHLWDA----FTGKLRASYRAYD--------------------------------------------HQDEYT 159 (406)
T ss_pred eccccCceeeeec----cccccccchhhhh--------------------------------------------hHHhhh
Confidence 9999999999999 7777776665432 222
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEc-CCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccce
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIR-GVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEH 407 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 407 (612)
...+++|++ ++..|++|. ...|+++|+ +.+........
T Consensus 160 aAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t--------------------------------------- 198 (406)
T KOG2919|consen 160 AAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT--------------------------------------- 198 (406)
T ss_pred hheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhh---------------------------------------
Confidence 234566773 266666554 578888887 33322111100
Q ss_pred eccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCccccc
Q 007229 408 IDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTE 486 (612)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~ 486 (612)
....++...+-+.+++|+| +.+.+++|+....+-||.-..+.+
T Consensus 199 ----------------------------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-- 242 (406)
T KOG2919|consen 199 ----------------------------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-- 242 (406)
T ss_pred ----------------------------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc--
Confidence 0000111234688999999 556999999999999998887776
Q ss_pred ceeeccccCceEEEEEcCCCcEEEEEcC-CCeEEEEecCCcceeeeccccccc-ceeEEEe--cCCCcEEEEeecCcEEE
Q 007229 487 EMVLEKHRGAITVIQYSPDVSMFASADG-NREAIVWDRVSKEVKLNNMLFHTA-RINCLAW--SPSSTMVATGSIDTCVI 562 (612)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~--s~~~~~l~s~~~d~~i~ 562 (612)
...+.+|.+.|+.++|.++|+.|.+|.. |-.|..||++......-.+..|.. .=..|.| .|++++||+|+.||.|+
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 6788899999999999999999999875 678999999887665455666665 3334444 58999999999999999
Q ss_pred EEEccCCCcceeeeecccccCeeeEEEecCc-eEEEcc
Q 007229 563 IYEIGKPASSRITIKNAHLGGVYGVAFMDDF-NVVSSG 599 (612)
Q Consensus 563 iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~ 599 (612)
+||++..+ .....+..|+..+..+++.|-- .+++++
T Consensus 323 vwdlk~~g-n~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 323 VWDLKDLG-NEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred EEecCCCC-CcccccccccccccceecCcccceeeecc
Confidence 99999977 7788888899999999988443 344443
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=160.05 Aligned_cols=235 Identities=20% Similarity=0.263 Sum_probs=178.6
Q ss_pred eEEEEccCCCEEEEec-CCEEEEEeCCCC-------ceee-----Eec-cCCCceEEEEEC-------CCCCEEEEeeCc
Q 007229 22 ILISGNPKTDTILYCN-GRSVLIRYLDKP-------LHVE-----FYG-EHGYPVTVARYS-------PNGEWIASADVS 80 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~-~~~i~i~~~~~~-------~~~~-----~~~-~h~~~v~~~~~s-------~d~~~las~~~d 80 (612)
..+-|||||..|++.+ ++.+.+|++... .... .++ .....|...+|- |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 4678999999999988 899999998521 1110 111 123456666665 567899999999
Q ss_pred CeEEEeecCCCceeeeeeee--cCC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCcee--ee-----eccCC
Q 007229 81 GSVRIWGTHNGFVLKNEFKV--LSG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTV--GD-----FDGHS 147 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~--~~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~--~~-----~~~~~ 147 (612)
.-|++||.-+++ ++..+.. |.. .-.+++|+|||.+|.++-... |++++.. .|+.- .. -.+..
T Consensus 133 ~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrc----irvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 133 QPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC----IRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred Cceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeecccce----EEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999998 5555543 333 346899999999999876653 6666663 34321 11 12346
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCC-Cee
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSG-EKI 225 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~-~~~ 225 (612)
+-+.+++|+|....+++.|+....+-||.-..++++..+.+|.+.|+.+.|.++|+.|++|.. |-.|..||++.- .++
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 788999999988778999999999999999999999999999999999999999999999887 778999999864 444
Q ss_pred eeeeccCCccc---cEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 226 GEFSSEDGHHG---SIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 226 ~~~~~~~~~~~---~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
..+. .|.. .-.-....|++++|++|+.||.|++||+
T Consensus 288 ~~L~---rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 288 YALE---RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred hhhh---hhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 4552 3333 2223445678999999999999999999
No 172
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=170.46 Aligned_cols=231 Identities=14% Similarity=0.150 Sum_probs=178.0
Q ss_pred CCCEEEEec-CCEEEEEeCCCC---ceeeE------------------eccCCCceEEEEECCCC-CEEEEeeCcCeEEE
Q 007229 29 KTDTILYCN-GRSVLIRYLDKP---LHVEF------------------YGEHGYPVTVARYSPNG-EWIASADVSGSVRI 85 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~~~~---~~~~~------------------~~~h~~~v~~~~~s~d~-~~las~~~d~~i~i 85 (612)
.|+++|.|. +..|.|||+.=- .+... -.+|+..|.+++|..+- ..||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 578999999 899999998611 11111 23699999999998854 68999999999999
Q ss_pred eecCCCceeeeeeeecCCCeEEEEECCC-CCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEE
Q 007229 86 WGTHNGFVLKNEFKVLSGRIDDLQWSPD-GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 86 wd~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 164 (612)
||+.+++ ....+..|.+.|.++.|.|. ...|++++.++ ++.+.+..........-...+.|..++|.|.....++
T Consensus 271 WD~~~g~-p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~---~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDTGK-PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDG---TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCCCC-cceehhhcCCceeEEEecCCCceEEEeccccc---eEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 9999999 56688899999999999995 57888888888 4566665532222222234567899999999988899
Q ss_pred EeecCCeEEEEeCCCC-eeeecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 165 TCGEDFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
++..||+++-+|++.. +++.+++.|.++|.++++++.- .+|++++.|+.+++|++............ -.-+...|.+
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~-~~~~rl~c~~ 425 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS-FKLGRLHCFA 425 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc-ccccceeecc
Confidence 9999999999999875 8899999999999999999854 47889999999999998765543332100 1123366777
Q ss_pred EecCCC-EEEEEeCCCcEEEEEe
Q 007229 243 WSPDGK-KVLTVSADKSAKVWEI 264 (612)
Q Consensus 243 ~~~~~~-~l~~~~~dg~i~iw~~ 264 (612)
+.|+-. +++.|+..+.+++||+
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cCCCcceEEEecCccceEEEeec
Confidence 777544 5677777888999998
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=3.7e-22 Score=158.79 Aligned_cols=312 Identities=15% Similarity=0.128 Sum_probs=207.0
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+...++.|...|+++.|..+++ |.+|...|.|++|++.+.+....++ .+...|+.+.--|++ .|.+-+.|+.+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEE
Confidence 4566778999999999999885 9999999999999999999888888 677889999999985 58888999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
++..+..+.. |.-.+.++-|.+.. +...+. ...|-+..+.+.....+.....
T Consensus 83 ~ia~s~~i~i------~Si~~nslgFCrfS--l~~~~k---~~eqll~yp~rgsde~h~~D~g----------------- 134 (323)
T KOG0322|consen 83 TIAYSAFISI------HSIVVNSLGFCRFS--LVKKPK---NSEQLLEYPSRGSDETHKQDGG----------------- 134 (323)
T ss_pred EccCcceEEE------eeeeccccccccce--eccCCC---cchhheecCCcccchhhhhccC-----------------
Confidence 9987554433 23445555555422 221111 1111110000111111000000
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE--ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL--KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
..-.+.+-+ ..-.+..+.+.+..+. ....-++++|.++|.+.+||+.++.....++.
T Consensus 135 ------~~tqv~i~d--------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~------- 193 (323)
T KOG0322|consen 135 ------DTTQVQIAD--------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ------- 193 (323)
T ss_pred ------ccceeEccC--------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-------
Confidence 000111111 1112233444444433 21134566788899999999887633222110
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
.|. .......|..++.+
T Consensus 194 ------------------~~k---------------------------------------------v~~~~ash~qpvls 210 (323)
T KOG0322|consen 194 ------------------SSK---------------------------------------------VESPNASHKQPVLS 210 (323)
T ss_pred ------------------ccc---------------------------------------------cccchhhccCccee
Confidence 000 01111225567888
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCc--ccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGN--TLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
+.+.+.-..=++|+.+..+..|+++.. .+.......-.+-.|..+..-||++.+|+++.|+.||||+.++...+ ..+
T Consensus 211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL-AVL 289 (323)
T KOG0322|consen 211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL-AVL 289 (323)
T ss_pred eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch-hhh
Confidence 888876666677888888889988643 33222233333445888999999999999999999999999999997 678
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
..|...|++++|+||...+|+++.|++|.+|++
T Consensus 290 kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 889999999999999999999999999999986
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=8.3e-22 Score=156.80 Aligned_cols=288 Identities=17% Similarity=0.196 Sum_probs=201.5
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-ecccceEEEEe-eccEEEEecCCCeEEEE
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-KYDARIKCLAA-VEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~-~~~~l~~~~~~~~i~~~ 395 (612)
.+...+++|...++++.|-. +.+|.+|..-|.+.+|++++........ .+...|..+.. .++.+.+-+.|..+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa--~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQA--NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhcc--chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEE
Confidence 34566778999999999986 6779999999999999999988877666 47788888888 66999999999999999
Q ss_pred ecCCCCCCccceeccCCCcc-eeeecCCC--CcEEEEEeecc---EEEeecccceeee-------cccceEEEEEEcc-C
Q 007229 396 PLCEGECGDAEHIDVGSQPL-DLSLALSS--PELALVSTESG---VILLDSLKVMSKI-------DLGFTVTACAIAP-D 461 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~i~~~~~s~-~ 461 (612)
++..........+....--. ..++.+.. .........++ ..+.+.+...+.. ...+.+.|..+.. +
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 99875544333222111110 01111111 11111111111 1112211111111 1123455554322 2
Q ss_pred CC--eEEEEecCCeEEEEEccCcccc--------cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc--cee
Q 007229 462 GS--EAIVGGQNGKLHIYSISGNTLT--------EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK--EVK 529 (612)
Q Consensus 462 ~~--~l~~~~~dg~v~i~d~~~~~~~--------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~ 529 (612)
+. ++++|.++|.+.+||+.++... .......|.++|.++.|.+.-..=++++.+..+..|++... .+.
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 32 4678889999999999986321 12334579999999999987667778888888999988654 221
Q ss_pred e-ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEE
Q 007229 530 L-NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVW 607 (612)
Q Consensus 530 ~-~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w 607 (612)
. ....-..-.|..+..-||++.+|+++.|++||||+.++ . +.+.+++.|++.|.+++|+ +...+++++.|+.|.+|
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-L-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-C-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence 1 11111234588899999999999999999999999999 6 8899999999999999999 66899999999999999
Q ss_pred Ee
Q 007229 608 RL 609 (612)
Q Consensus 608 ~~ 609 (612)
++
T Consensus 321 kL 322 (323)
T KOG0322|consen 321 KL 322 (323)
T ss_pred ec
Confidence 86
No 175
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.89 E-value=5.3e-21 Score=157.34 Aligned_cols=374 Identities=11% Similarity=0.119 Sum_probs=231.9
Q ss_pred EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc
Q 007229 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 186 (612)
-.+|||+|+++|++...+ +.|.+-++-+..+.+. --+.|.-+.|..|..+++.....|+.|.+|++...+....+
T Consensus 13 ~c~fSp~g~yiAs~~~yr----lviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYR----LVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeeeE----EEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 468999999999998764 3444444444333332 24667788999999988888899999999999999888888
Q ss_pred cccccceEEEEECCCCCeEE-EEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLI-SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
.....++.++.|||||+.++ +...+-.|.+|.+.+.+....- -....+..++|+|||++.+..+.-.....+++.
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec----ccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 88889999999999997655 4555889999999887765544 334556899999999998887754221111110
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
. -..-..+ ..+.-.+-..+.+.|++. +..
T Consensus 164 ~-c~~W~ll----------------------------------------------~~f~~dT~DltgieWsPd-g~~--- 192 (447)
T KOG4497|consen 164 S-CKAWILL----------------------------------------------KEFKLDTIDLTGIEWSPD-GNW--- 192 (447)
T ss_pred h-hHHHHHH----------------------------------------------HhcCCCcccccCceECCC-CcE---
Confidence 0 0111111 122223334556667741 333
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
+.+||.--...+.... ..-.+..+++ .++.++.|+.|+.+|+.+--+-+
T Consensus 193 ------laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk---------------------- 243 (447)
T KOG4497|consen 193 ------LAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK---------------------- 243 (447)
T ss_pred ------EEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeee----------------------
Confidence 4455432221111110 2233444444 35666777777766665432111
Q ss_pred CcEEEEEeeccEEEeecccceeeecccce--------------------EEEEEEccCCCeEEEEecCCeEEEEEccCc-
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFT--------------------VTACAIAPDGSEAIVGGQNGKLHIYSISGN- 482 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~- 482 (612)
...++-|... ..++.|.|.. -...+|.....
T Consensus 244 -------------------~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~---------~~a~~~~~se~~ 295 (447)
T KOG4497|consen 244 -------------------PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD---------LEAHIWEESETI 295 (447)
T ss_pred -------------------ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc---------cccCccccchhh
Confidence 1111111110 1223333221 11111211100
Q ss_pred -----------ccccceeeccccCceEEEEEcCCCcEEEEEcCC--CeEEEEecCCcceeeecccccccceeEEEecCCC
Q 007229 483 -----------TLTEEMVLEKHRGAITVIQYSPDVSMFASADGN--REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS 549 (612)
Q Consensus 483 -----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 549 (612)
++.+...+......+.-++||+|..++++-... +.+-+||++..+.. ..+. ...+|.+..|.|..
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~-avLi-Qk~piraf~WdP~~ 373 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH-AVLI-QKHPIRAFEWDPGR 373 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh-hhhh-hccceeEEEeCCCC
Confidence 001112222334557889999999999987543 67899999988764 3333 56789999999999
Q ss_pred cEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCC
Q 007229 550 TMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDA 602 (612)
Q Consensus 550 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~ 602 (612)
..|+.+.....+++|.... . ..+.. ....-.|..+.|. ++..++..+.|.
T Consensus 374 prL~vctg~srLY~W~psg-~-~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSG-P-RVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred ceEEEEcCCceEEEEcCCC-c-eEEec-CCCCceeeeEEecCCCcEEEEEcCCc
Confidence 9998888888899999876 2 33332 2233579999999 999999998885
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.7e-21 Score=157.58 Aligned_cols=281 Identities=14% Similarity=0.169 Sum_probs=192.2
Q ss_pred EEEEe-cCCEEEEEeCCCCceeeEeccCCCceEEEEECC--CCCEEEEeeCcCeEEEeecCCCceeee-eeeecC-CCeE
Q 007229 32 TILYC-NGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSP--NGEWIASADVSGSVRIWGTHNGFVLKN-EFKVLS-GRID 106 (612)
Q Consensus 32 ~l~~~-~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-~~i~ 106 (612)
.+|++ +.|.|++||..+++.+..+++|...++.++|.. ....+.+++.||+|++||+.......+ ....++ .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 35555 489999999999999999999999999999988 467899999999999999998765333 334444 3566
Q ss_pred EEEECCCCCEEEEEeCCC-CeeeEEEEEecCCce-eeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee-
Q 007229 107 DLQWSPDGLRIVACGDGK-GKSFVRAFMWDSGTT-VGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF- 182 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~- 182 (612)
+++..-.++.++.+.... ....+.+|+|...+. ++.+ ..|.+.|+++.|+|..+.+|++|+.||.|.+||++.-..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 777666777777665422 122456666665544 5554 679999999999999999999999999999999876432
Q ss_pred --eecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCC---------ccccEEEEEEecCCCEE
Q 007229 183 --KLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDG---------HHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 183 --~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~l 250 (612)
+...-.|...|.++.|..++ +.+.+-+...+..+|+++.+.+...+..+.- ....+...-...+...+
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 22233577789999999877 4588888899999999999886665532110 00111111111133344
Q ss_pred EEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC-ccc
Q 007229 251 LTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG-HVK 328 (612)
Q Consensus 251 ~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~ 328 (612)
+.++. -+...++-+. .... .........+.+ |..
T Consensus 282 ~l~g~~~n~~~~~~~~----~~~s----------------------------------------~~~~~~~a~l~g~~~e 317 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLV----DTSS----------------------------------------GSLLTEPAILQGGHEE 317 (376)
T ss_pred EEeccccCceeEEEee----eccc----------------------------------------ccccCccccccCCcHH
Confidence 44433 3444444431 0000 111222334444 666
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
-|.++.|. ..+.++++|++||.+.+|..
T Consensus 318 iVR~i~~~-~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 318 IVRDILFD-VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHHHhhh-cccceeeccCCCceEEEEec
Confidence 67777666 22789999999999999975
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.4e-22 Score=191.59 Aligned_cols=289 Identities=16% Similarity=0.229 Sum_probs=212.4
Q ss_pred EEEEEcCCCCEEEEEe----------ecCCeEEEEeCCC--Ce----eeecccccccceEEEEECCCCCe----EEEEEc
Q 007229 151 LSCEFKPTRPFRIATC----------GEDFLVNFYEGPP--FK----FKLSHREHSNFVNCIRFSPDGSK----LISVSS 210 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~----------~~d~~i~~wd~~~--~~----~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~ 210 (612)
..++|+|++..++++| +.+.++.+|.+.. .. ....+ .-....+.++|.+.+.. |+.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence 3568888887446655 3345566664332 22 22222 23456889999997765 888999
Q ss_pred CCcEEEEecCC---CCeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 211 DRKGLIYDGKS---GEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 211 dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
||.|.+||... +.....+.....|.+.|..+.|++... +|++|+.||.|.|||+ ...+.-....
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl----nn~~tP~~~~-------- 156 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL----NKPETPFTPG-------- 156 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc----CCcCCCCCCC--------
Confidence 99999999876 444444444568999999999999654 9999999999999999 2211111100
Q ss_pred eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 287 DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
-......|.+++|.......|++++.+|...+||++..+.+...
T Consensus 157 ------------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 157 ------------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred ------------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc
Confidence 12245678899999555889999999999999999877543332
Q ss_pred eecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceee
Q 007229 367 KKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSK 446 (612)
Q Consensus 367 ~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (612)
..+..
T Consensus 201 s~~~~--------------------------------------------------------------------------- 205 (1049)
T KOG0307|consen 201 SDTPG--------------------------------------------------------------------------- 205 (1049)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 21111
Q ss_pred ecccceEEEEEEccCC-CeEEEEecCC---eEEEEEccCcccccceeeccccCceEEEEEcCCC-cEEEEEcCCCeEEEE
Q 007229 447 IDLGFTVTACAIAPDG-SEAIVGGQNG---KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDV-SMFASADGNREAIVW 521 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~-~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iw 521 (612)
...+..++|+|+. ..+++++.|. .|.+||++.-. .+.+.+++|...|.++.|++.+ ++|++++.|+.|.+|
T Consensus 206 ---~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~w 281 (1049)
T KOG0307|consen 206 ---RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICW 281 (1049)
T ss_pred ---ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEe
Confidence 1236778999976 3455555443 79999998654 3467789999999999999955 899999999999999
Q ss_pred ecCCcceeeecccccccceeEEEecCCCc-EEEEeecCcEEEEEEccC
Q 007229 522 DRVSKEVKLNNMLFHTARINCLAWSPSST-MVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 522 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~d~~i~iwd~~~ 568 (612)
+.++++.+.. +......+..+.|+|... .++.++-||.|.||.+..
T Consensus 282 N~~tgEvl~~-~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 282 NPNTGEVLGE-LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCceEeee-cCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999999844 554778899999999766 788999999999999987
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-19 Score=143.02 Aligned_cols=235 Identities=12% Similarity=0.183 Sum_probs=181.9
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCC---------ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNG---------FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
.|.+-+++|.+++|+.|..+|+|.+..+.+. +.......+|.++++.++|. ..+|++++++ .++-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG----~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDG----LVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCc----eEEE
Confidence 4666789999999999999999999988632 22334557899999999998 5578888874 4788
Q ss_pred EEecCCce------eee--eccCC-----ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEE
Q 007229 132 FMWDSGTT------VGD--FDGHS-----RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRF 198 (612)
Q Consensus 132 ~~~~~~~~------~~~--~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 198 (612)
|.|+.... +.. .+.|. -.|.++-..|..+. ++.++.|+.++-||+++|+...++++|++.|.++.-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 88884322 111 12222 35789999998885 677779999999999999999999999999999998
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC------Cc-cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED------GH-HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG 271 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~-~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 271 (612)
-.....+++|++||++++||+++++.+..+...+ .| ...|-+++- +..++++|+ ...+.+|.+ ...
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhL----rss 237 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHL----RSS 237 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEec----cCC
Confidence 5555579999999999999999999988874321 11 223445544 566787765 457999999 888
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
++...|..+. .+..+.|.++.+++++..+.+.-|.+..
T Consensus 238 e~t~vfpipa------~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 238 ESTCVFPIPA------RVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred CceEEEeccc------ceeEeeeecceEEEeccccceeeeeecc
Confidence 8888887654 6667788899999999999998887553
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=1.9e-20 Score=151.11 Aligned_cols=244 Identities=20% Similarity=0.342 Sum_probs=182.7
Q ss_pred CCCCceeEEEEccCCCE-EEEecC--------CEEEEEeCCCCc---------eeeEec-cCCCceEEEEECCCCCEEEE
Q 007229 16 TERGRGILISGNPKTDT-ILYCNG--------RSVLIRYLDKPL---------HVEFYG-EHGYPVTVARYSPNGEWIAS 76 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~-l~~~~~--------~~i~i~~~~~~~---------~~~~~~-~h~~~v~~~~~s~d~~~las 76 (612)
-+.|.|..++-+|-.+. |+++.. ....||.+.... ++..|. .+-+.|.|+.|.|++..||+
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 35678888999995554 444432 267799987432 223333 56679999999999999998
Q ss_pred eeCcCeEEEeecCCCceeeeeee-----ecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEecCCceeeee-ccCCc
Q 007229 77 ADVSGSVRIWGTHNGFVLKNEFK-----VLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-DGHSR 148 (612)
Q Consensus 77 ~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~ 148 (612)
-. |..|.+|++..+..+...+. .+....++-+|+| ||..+++.++.. ++.|+..+.++...+ ..|..
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t----l~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST----LQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc----EEEEEccchhhhcchhhhhcc
Confidence 85 78999999998765332222 3455788889999 788888888775 344444455555554 57999
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCC---
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGE--- 223 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~--- 223 (612)
.|..+.|+|+.++.|++|+.||.|++||.+. ..+++.+.+|...|.++.|+|. .+++++++.|..|.+|....-.
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 9999999999999999999999999999875 4567789999999999999995 5678899999999999754211
Q ss_pred ------------------e---ee--eeeccCCccccEEEEEEecCC-CEEEEEeCCCcEEEEEe
Q 007229 224 ------------------K---IG--EFSSEDGHHGSIYAVSWSPDG-KKVLTVSADKSAKVWEI 264 (612)
Q Consensus 224 ------------------~---~~--~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~ 264 (612)
. +. .+.....|...|++++|+.-. =.+++-+.||.+.|=.+
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0 00 011224688999999999844 45778899999988765
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.1e-22 Score=188.72 Aligned_cols=286 Identities=19% Similarity=0.244 Sum_probs=216.5
Q ss_pred EEEECCCCC-EEEEee----------CcCeEEEeecC--CCce-eee-eeeecCCCeEEEEECCCCCE----EEEEeCCC
Q 007229 64 VARYSPNGE-WIASAD----------VSGSVRIWGTH--NGFV-LKN-EFKVLSGRIDDLQWSPDGLR----IVACGDGK 124 (612)
Q Consensus 64 ~~~~s~d~~-~las~~----------~d~~i~iwd~~--~~~~-~~~-~~~~~~~~i~~~~~s~~~~~----l~~~~~~~ 124 (612)
.++|||++. +||+|. .+.++.||.+. +.+. ++. --..-....+.++|.+.|.. |+.+.+++
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 578999887 666542 34556666554 2221 111 11123457889999998877 55555555
Q ss_pred CeeeEEEEEecC------CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc--ccccceEEE
Q 007229 125 GKSFVRAFMWDS------GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR--EHSNFVNCI 196 (612)
Q Consensus 125 ~~~~i~i~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~ 196 (612)
.|.+|+-+. ...+.+...|.+.|..+.|++....+||+|+.||.|.|||+...+.-.+.. ...+.|.++
T Consensus 91 ---~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 91 ---NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred ---ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 245554442 234667789999999999999988889999999999999998866555542 245789999
Q ss_pred EECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC-CEEEEEeCCC---cEEEEEeecCCCCC
Q 007229 197 RFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG-KKVLTVSADK---SAKVWEILEDGSGG 271 (612)
Q Consensus 197 ~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg---~i~iw~~~~~~~~~ 271 (612)
+|+.. ...|++++.+|.+.|||++..+.+..+... .....+..++|+|+. ..+++++.|. .|.+||+
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl------- 239 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL------- 239 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeeeeCCCCceeeeeecCCCCCceeEeecc-------
Confidence 99974 456788888999999999999888777422 222457899999965 4566666653 4667776
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 351 (612)
+....+.+.+.+|...|.++.|+..+..++++++.|+.
T Consensus 240 ------------------------------------------R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 240 ------------------------------------------RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred ------------------------------------------cccCCchhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 55566677888999999999999766899999999999
Q ss_pred EEEEEcCCceeeeeceecccceEEEEe---eccEEEEecCCCeEEEEecCCCCC
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGEC 402 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~ 402 (612)
|.+|+.++++.+.......+.+..+.| +...++.++.||.|.++.+.....
T Consensus 278 ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 999999999998888777888888888 667899999999999999887653
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=155.97 Aligned_cols=277 Identities=15% Similarity=0.215 Sum_probs=191.0
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC-CCEEEEEeecCCeEEEEeCCCCeeeecc--cccc-c
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT-RPFRIATCGEDFLVNFYEGPPFKFKLSH--REHS-N 191 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~-~ 191 (612)
.+|++-..+ .+++++|.+++.+..++++...+..++|... ++..+.+|+.||+|++||++.......+ ..++ .
T Consensus 42 ~vav~lSng---sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 42 AVAVSLSNG---SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eEEEEecCC---eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 455554555 5899999999999999999999999999874 5557999999999999999987765553 3444 5
Q ss_pred ceEEEEECCCCCeEEEEEc----CCcEEEEecCCCCe-eeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEee
Q 007229 192 FVNCIRFSPDGSKLISVSS----DRKGLIYDGKSGEK-IGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~ 265 (612)
+..+++..-.++.+++|+. +-.+.+||++..+. +..+ .+.|...|++++|+| +.+.|++|+.||.+.+||+.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~--~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL--NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh--hhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 6778887777888887754 66799999998877 6666 458999999999999 67899999999999999994
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
.+.+...++. .-.|...|..+.|..+.-+.+.+
T Consensus 197 ~d~EeDaL~~-----------------------------------------------viN~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 197 KDNEEDALLH-----------------------------------------------VINHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred CCcchhhHHH-----------------------------------------------hhcccceeeeeeeecCCcceEEE
Confidence 3322222222 22366678888888533456888
Q ss_pred EecCCcEEEEEcCCceeeeeceec-------------ccceEEEEe-eccEEEEecC-CCeEEEEecCCCCCCccceecc
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKY-------------DARIKCLAA-VEEVIFTAGF-DNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~i~~~~~-~~~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
-+..++..+|+++.+......... ..-|.+... +.+..+.++. .++..++.+......
T Consensus 230 lTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~------- 302 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG------- 302 (376)
T ss_pred EEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccc-------
Confidence 888888999988877644332211 112233323 3344444433 444444333211100
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec--ccceEEEEEEccCCCeEEEEecCCeEEEEEc
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID--LGFTVTACAIAPDGSEAIVGGQNGKLHIYSI 479 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~ 479 (612)
+..+....+. +..-++++.|...+..+.+|++||.+.+|..
T Consensus 303 ----------------------------~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 303 ----------------------------SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ----------------------------cccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 0001111111 3445677888888899999999999999985
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=8.9e-20 Score=147.34 Aligned_cols=293 Identities=18% Similarity=0.227 Sum_probs=200.7
Q ss_pred CCEEEEEeCCCC--ce-eeEeccCCCceEEEEECC-CCCEEEEeeCc-------CeEEEeecCCCcee--------eeee
Q 007229 38 GRSVLIRYLDKP--LH-VEFYGEHGYPVTVARYSP-NGEWIASADVS-------GSVRIWGTHNGFVL--------KNEF 98 (612)
Q Consensus 38 ~~~i~i~~~~~~--~~-~~~~~~h~~~v~~~~~s~-d~~~las~~~d-------~~i~iwd~~~~~~~--------~~~~ 98 (612)
++.|.+.+++.+ .. -..|..|.+.|..++-+| |.+.|+++-.+ ..+.||.+...... ...+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 578887776643 22 244677899999999999 55677776432 24789998754321 1122
Q ss_pred e-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce-eeee-----ccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 99 K-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT-VGDF-----DGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 99 ~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
. .+-+.|.|+.|.|++..|++..+.. |.+|..+.+.. +..+ .+|....++-+|+|..+---+....|++
T Consensus 119 dteavg~i~cvew~Pns~klasm~dn~----i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMDDNN----IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEeccCc----eEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc
Confidence 2 4556899999999999999988665 66777775554 3333 2366778889999932212344455889
Q ss_pred EEEEeCCCCeeeeccc-ccccceEEEEECCCCC-eEEEEEcCCcEEEEecCCCC-eeeeeeccCCccccEEEEEEec-CC
Q 007229 172 VNFYEGPPFKFKLSHR-EHSNFVNCIRFSPDGS-KLISVSSDRKGLIYDGKSGE-KIGEFSSEDGHHGSIYAVSWSP-DG 247 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~~~-~~ 247 (612)
+..||+++.+....+. .|...|..+.|+|+.+ +|++++.||.|++||.+.-+ ++..+ .+|...|.++.|+| -.
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el---~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL---PGHSHWVWAVRFNPEHD 271 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc---CCCceEEEEEEecCccc
Confidence 9999999988777754 6888999999999876 67889999999999987644 45555 58999999999999 45
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
+++++++.|..|.+|....-....+................ ..++ .-....+..+..|.
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse-----------------er~k----pL~dg~l~tydehE 330 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE-----------------ERVK----PLQDGQLETYDEHE 330 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhH-----------------Hhcc----cccccccccccccc
Confidence 68899999999999987321111111110000000000000 0000 01122345677899
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
..|.+++|+..+.-.|++-+.||.+.|=.+.
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9999999997778899999999999886554
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=9.5e-20 Score=173.04 Aligned_cols=302 Identities=18% Similarity=0.257 Sum_probs=219.4
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCcEEEEEeecCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKSAKVWEILEDG 268 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~iw~~~~~~ 268 (612)
.+...+.|+|-...++++...-.|+|||.+.++.+..+.........|+.+.+-. |..++++++.||.|++|+-....
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3567788999888999988788899999999999988865555667899999876 55689999999999999865443
Q ss_pred -CCCeeEeeeeccCcccccee--eeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 269 -SGGRVIKTFASSTSNAVEDM--LVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
...+.+..+..-........ -.-..|. .+.+++++.-..|++||............+....++++......++.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 45556665554332211111 1233444 778888888999999998776655555556677788887774448999
Q ss_pred EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 344 LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
++|..||.+++||.+..... ..+..|.-.+
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~d--------------------------s~v~~~R~h~------------------------ 1254 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPD--------------------------SLVCVYREHN------------------------ 1254 (1387)
T ss_pred EEeecCCceEEeecccCCcc--------------------------ccceeecccC------------------------
Confidence 99999999999998754321 1111221111
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC-eEEEEecCCeEEEEEccCcccccceeecccc--C-ceEE
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS-EAIVGGQNGKLHIYSISGNTLTEEMVLEKHR--G-AITV 499 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~--~-~i~~ 499 (612)
...+|..+.+.+.|- .|++|+.||.|++||++............|. + ..++
T Consensus 1255 -------------------------~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1255 -------------------------DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTA 1309 (1387)
T ss_pred -------------------------CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcccee
Confidence 111367777877554 4999999999999999874332223333333 4 5999
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEecCCcceeeec-----ccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 500 IQYSPDVSMFASADGNREAIVWDRVSKEVKLNN-----MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+..+++...+|+|+. +.|+||++...+..... .....+.+.|++|+|-.-+||+|+.|.+|.||....
T Consensus 1310 l~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred eeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 999999999999998 99999999766542111 122345689999999999999999999999999877
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.9e-19 Score=151.95 Aligned_cols=231 Identities=19% Similarity=0.193 Sum_probs=177.4
Q ss_pred CCCEEEEec----CCEEEEEeCC-CCce---eeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCce------
Q 007229 29 KTDTILYCN----GRSVLIRYLD-KPLH---VEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFV------ 93 (612)
Q Consensus 29 d~~~l~~~~----~~~i~i~~~~-~~~~---~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~------ 93 (612)
+.++||+.. +|...+.-+. +|+. ...+.||+++|..++|+| +...|||||.|.+|.||++..+..
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 456777653 3444444443 3432 334679999999999999 667899999999999999875532
Q ss_pred eeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
....+.+|+..|--++|+|-- ..|+++|.+. .+.+|+..+|+.+-++. |.+.|+++.|+.+|. ++++.+.|+.|
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn---~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkv 197 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN---TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKV 197 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCc---eEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeeccccee
Confidence 356888999999999999964 5677777777 57888888999988888 999999999999999 69999999999
Q ss_pred EEEeCCCCeeeeccccccc-ceEEEEECCCCCeEEEEE---cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 173 NFYEGPPFKFKLSHREHSN-FVNCIRFSPDGSKLISVS---SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
|+||.++++.+..-.+|.+ .-..+.|-.+|..+-+|- .+.++-+||..+-+....+... .....|.---|.+|.+
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTS 276 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCC
Confidence 9999999999988777765 334456778888444432 2688999997765544333222 4556677777888888
Q ss_pred EEEEEe-CCCcEEEEEee
Q 007229 249 KVLTVS-ADKSAKVWEIL 265 (612)
Q Consensus 249 ~l~~~~-~dg~i~iw~~~ 265 (612)
.+..++ .|+.|+.|.+.
T Consensus 277 ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred EEEEEecCCcceEEEEec
Confidence 776555 58999999994
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=3e-18 Score=157.95 Aligned_cols=282 Identities=13% Similarity=0.068 Sum_probs=174.7
Q ss_pred EEEEEeecCCeEEEEeCCC-Ce--eeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCC-CCeeeeeeccCCcc
Q 007229 161 FRIATCGEDFLVNFYEGPP-FK--FKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKS-GEKIGEFSSEDGHH 235 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~-~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~ 235 (612)
++.++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. ++. ...... ...
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-~~~ 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES-PLP 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee-cCC
Confidence 3456667789999999964 33 334443 345677899999999987765 478899999873 332 211111 233
Q ss_pred ccEEEEEEecCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 236 GSIYAVSWSPDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
.....++|+|+++++++++. ++.+.+|++..++...+.+..
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-------------------------------------- 121 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-------------------------------------- 121 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee--------------------------------------
Confidence 45678999999999888764 789999998321111111110
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEE-EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEE
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTI-LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVW 393 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~ 393 (612)
.. +......+++++. ++++ ++...++.|.+||+.+........
T Consensus 122 --------~~-~~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-------------------------- 165 (330)
T PRK11028 122 --------IE-GLEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQE-------------------------- 165 (330)
T ss_pred --------cc-CCCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccC--------------------------
Confidence 00 1112334555532 4555 455566888888876522111000
Q ss_pred EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec-CC
Q 007229 394 RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ-NG 472 (612)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg 472 (612)
..............++|+|++++++++.+ ++
T Consensus 166 ------------------------------------------------~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 166 ------------------------------------------------PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred ------------------------------------------------CCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence 00000001123567899999999988876 89
Q ss_pred eEEEEEccC--cccccceeeccc------cCceEEEEEcCCCcEEEEEcC-CCeEEEEecCCcceeeeccccc---ccce
Q 007229 473 KLHIYSISG--NTLTEEMVLEKH------RGAITVIQYSPDVSMFASADG-NREAIVWDRVSKEVKLNNMLFH---TARI 540 (612)
Q Consensus 473 ~v~i~d~~~--~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~---~~~i 540 (612)
.|.+|+++. +++.....+..+ ......+.|+|++++|+++.. ++.|.+|++.......+. .++ ....
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~-~~~~~~~~~p 276 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF-EGHQPTETQP 276 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE-eEEEeccccC
Confidence 999999973 333222222211 112346899999999998864 789999999654321111 111 1245
Q ss_pred eEEEecCCCcEEEEeec-CcEEEEEEccC
Q 007229 541 NCLAWSPSSTMVATGSI-DTCVIIYEIGK 568 (612)
Q Consensus 541 ~~~~~s~~~~~l~s~~~-d~~i~iwd~~~ 568 (612)
..+.|+|||++|+++.. +++|.+|+++.
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 68999999999987765 88999999864
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=153.24 Aligned_cols=303 Identities=12% Similarity=0.124 Sum_probs=216.8
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC------Ceeeeccc-ccccceEEEEECCCCCeEEEEEcCCc
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP------FKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
+.+.+|.+-|.++.|+.++++ |++|+.|..+++|++.. .+++.... .|...|.|++|......|++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 346789999999999999995 99999999999999653 23333332 35589999999999999999999999
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
|...|+++.+.+..+... ...+.|+.+..+|-.+.|++.+.+|.|.+||..+....+.++.
T Consensus 129 VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~------------------ 189 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL------------------ 189 (609)
T ss_pred eEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee------------------
Confidence 999999999999888321 3345899999999888999999999999999843221111111
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
+.........+.|.+....+|++.+..+-+.+||.+...........
T Consensus 190 -----------------------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~---- 236 (609)
T KOG4227|consen 190 -----------------------------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSM---- 236 (609)
T ss_pred -----------------------------ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhc----
Confidence 11122334556667666888999999999999998765443221100
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec-ccce
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID-LGFT 452 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 452 (612)
...++ ....
T Consensus 237 ----------------------------------------------------------------------~~~L~~~~~~ 246 (609)
T KOG4227|consen 237 ----------------------------------------------------------------------FKGLPQENTE 246 (609)
T ss_pred ----------------------------------------------------------------------cccCcccchh
Confidence 00000 0112
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec-cc-----cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-KH-----RGAITVIQYSPDVSMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~-----~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 526 (612)
-.+..|+|.|..+.+--....-.+||+-+..+. +..+. .. ...+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 247 ~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 247 WMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred hhheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 345678888888777666556667787765542 22222 11 1247778887654 4999999999999987431
Q ss_pred ce----------------------eeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 527 EV----------------------KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 527 ~~----------------------~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.. .+..+.+|.+-++.+.|+|...+|++.+-.+.++||.-..
T Consensus 325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 10 1345788999999999999999999999999999997543
No 187
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.8e-18 Score=158.98 Aligned_cols=464 Identities=12% Similarity=0.109 Sum_probs=289.4
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
|...-.++.|+|.| ++|-|+.. .|.|-|..+-+ +.+.+..|+..|+.+.|.|..-...-
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-~iqsie~h~s~V~~VrWap~~~p~~l------------------ 72 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-LIQSIELHQSAVTSVRWAPAPSPRDL------------------ 72 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhh-hhhccccCccceeEEEeccCCCchhc------------------
Confidence 33446788999988 78888654 78899988887 66788899999999999986422111
Q ss_pred ceeeeeccCCceEEEEEEcCC-CCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECC---CC-CeEEEEEcCC
Q 007229 138 TTVGDFDGHSRRVLSCEFKPT-RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP---DG-SKLISVSSDR 212 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg 212 (612)
++|. ...++|++...|.|.+||...+..+..+..|..++..++|-+ +. ..|++-....
T Consensus 73 -----------------lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss 135 (1062)
T KOG1912|consen 73 -----------------LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS 135 (1062)
T ss_pred -----------------cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence 2221 233788999999999999999998888999999999999986 33 4666677788
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc--c------
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS--N------ 283 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~------ 283 (612)
++.+|+..+|+...... .......++.+.| |.+.+...+..|.+.+-+.....+..-..+.++.... .
T Consensus 136 ~lvLwntdtG~k~Wk~~---ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 136 TLVLWNTDTGEKFWKYD---YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred EEEEEEccCCceeeccc---cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence 99999999999988872 3445566689998 7777877777888777766432222222222222111 0
Q ss_pred ------ccc------e-eee----eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEE
Q 007229 284 ------AVE------D-MLV----GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILS 345 (612)
Q Consensus 284 ------~~~------~-~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~ 345 (612)
... . ..+ +....-..++.......+.++|++-.. .+....-..+.+.-+.+. ++..+.+++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~-~l~vvpier~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC-CLAVVPIERGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc-eeEEEEeccCCcceeEeccCCCcceEEE
Confidence 000 0 001 111124566777788889999966433 333333344445555555 445788999
Q ss_pred EecCCcEEEEEcCCceeeeece------ecccceEEEEe--------------eccEEEEecCCCeEEEEecCCCCCCcc
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEK------KYDARIKCLAA--------------VEEVIFTAGFDNKVWRVPLCEGECGDA 405 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~------~~~~~i~~~~~--------------~~~~l~~~~~~~~i~~~~~~~~~~~~~ 405 (612)
.-.||.+.+|-.+......... .....+.+++. ....++..-.+|...+|.+.+++....
T Consensus 292 lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~ 371 (1062)
T KOG1912|consen 292 LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLD 371 (1062)
T ss_pred EecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcc
Confidence 9999999999765422222110 02233333333 233344445677888899887654311
Q ss_pred ceeccCCCcceeeecCCCCcEEEEEeeccEEEee-----cccceeeecccceEEEEEEccCC-------CeEEEEecCCe
Q 007229 406 EHIDVGSQPLDLSLALSSPELALVSTESGVILLD-----SLKVMSKIDLGFTVTACAIAPDG-------SEAIVGGQNGK 473 (612)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~-------~~l~~~~~dg~ 473 (612)
..... ......|+..+....+ ....-+.+-+ .+....+...-...+-..-.|.+ .++|+|++.|+
T Consensus 372 ~~s~~--iel~~pf~f~~~~~~v-~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 372 YRSSS--IELVLPFDFNLSTKLV-GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGT 448 (1062)
T ss_pred ccccc--ccccccccccCceeeh-hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCce
Confidence 11111 1111112211111111 0000001111 11111111100011111111222 36899999999
Q ss_pred EEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE---------cCCCeEEEEecCCcceeeec--ccccccceeE
Q 007229 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA---------DGNREAIVWDRVSKEVKLNN--MLFHTARINC 542 (612)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------~~d~~i~iwd~~~~~~~~~~--~~~~~~~i~~ 542 (612)
|.++|+.++.+ ...+..|...|.++.|--..+++-.+ +.-+.+.+-|+++|....-. ......+|+.
T Consensus 449 V~vvdvst~~v--~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 449 VDVVDVSTNAV--AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred EEEEEecchhh--hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 99999999987 67788899999999997766554332 22245778899998764222 3345688999
Q ss_pred EEecCCCcEEEEeecCcEEEEEEccC
Q 007229 543 LAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 543 ~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+..|..|+||+....|.-+.+||+++
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhcc
Confidence 99999999999999999999999854
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=3.1e-18 Score=143.65 Aligned_cols=236 Identities=13% Similarity=0.143 Sum_probs=183.3
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC--cCeEEEeecCCCceeee
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV--SGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~--d~~i~iwd~~~~~~~~~ 96 (612)
..+..+.|+.|...|..|+.....+++.+.-............|.-+-||.. ++|..+. -+.+++.+.+.+..+..
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred cceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEE
Confidence 3567788999999999999777778887754442222233445666777766 5555543 34588998887764332
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc---CCceEEEEEEcCCCCEEEEEeec-CCeE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG---HSRRVLSCEFKPTRPFRIATCGE-DFLV 172 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~-d~~i 172 (612)
. .....|.++.+. .++|+++-.+. |.|++..+.+.++++.. +...+.++.+++.+.|+..-++. .|.|
T Consensus 84 ~--~fpt~IL~VrmN--r~RLvV~Lee~----IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 84 I--FFPTSILAVRMN--RKRLVVCLEES----IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred E--ecCCceEEEEEc--cceEEEEEccc----EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 2 235578888875 55788888775 67888889998888754 55567777777777775554444 4899
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCc-EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK-GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
.+||..+.+....+..|.+++.+++|+++|.+||++++.|+ |||+.+.+|+.+.++... .....|.+++|+|++++|+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG-~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG-TYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC-ceeeEEEEEEECCCCCeEE
Confidence 99999999999999999999999999999999999999998 679999999999999643 3356799999999999999
Q ss_pred EEeCCCcEEEEEee
Q 007229 252 TVSADKSAKVWEIL 265 (612)
Q Consensus 252 ~~~~dg~i~iw~~~ 265 (612)
+.+..++|++|.+.
T Consensus 235 ~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 235 ASSNTETVHIFKLE 248 (391)
T ss_pred EecCCCeEEEEEec
Confidence 99999999999993
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.7e-20 Score=165.84 Aligned_cols=273 Identities=14% Similarity=0.206 Sum_probs=191.7
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC--------CCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS--------GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
..++..|...|+.++|.|-...|++++.||.+.+|+++. -+++.++ .+|.++|.|+++.+++..+++|+
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf---raH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF---RAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE---ecccCceEEEEecCCceEEEeec
Confidence 345677889999999999999999999999999999932 1244445 59999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.||+|+.|++..+ ... +|...+......+.||.+.++.++
T Consensus 364 ~Dg~I~~w~~p~n---~dp-------------------------------------~ds~dp~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 364 IDGTIRCWNLPPN---QDP-------------------------------------DDSYDPSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred cCceeeeeccCCC---CCc-------------------------------------ccccCcchhccceeccccceeeee
Confidence 9999999998311 000 011222233467889999999999
Q ss_pred EEecCCcEEEEEecCCcEEEEEcCCceeeeecee-cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 335 ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
++.. ...|++++.||+++.|+............ ..+....+.+.....+-...+.....+++........
T Consensus 404 ~s~~-~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-------- 474 (577)
T KOG0642|consen 404 LSST-KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-------- 474 (577)
T ss_pred eccc-ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh--------
Confidence 9932 66799999999999999877666221111 2233344444333222222223333333222221100
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH 493 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 493 (612)
+.++... ..........+.-+...|.+.+.+++.+|+.|+++|..++++ ......|
T Consensus 475 ---------------------~~~~~s~-~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~--l~s~~a~ 530 (577)
T KOG0642|consen 475 ---------------------LLIFESS-ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI--LHSMVAH 530 (577)
T ss_pred ---------------------eeecccc-CCCcccccCccceEEecCCCCeeEecccCCceeccccccccc--chheeec
Confidence 0000000 000000112466778889999999999999999999999988 7778889
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
...++++++.|+|.+|++++.|+.+++|.+....+...
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 99999999999999999999999999999988777643
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.2e-19 Score=153.04 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=171.8
Q ss_pred CCCEEEEEeCCCCe-eeEEEEEecCCce---eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-------
Q 007229 113 DGLRIVACGDGKGK-SFVRAFMWDSGTT---VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK------- 181 (612)
Q Consensus 113 ~~~~l~~~~~~~~~-~~i~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------- 181 (612)
+.++++..-+..+. .++.+-.-.+|+. .-.+.+|+++|..++|+|.+...+|+|++|.+|.+|++..+.
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 45666654332211 1333333335543 334679999999999999888899999999999999987654
Q ss_pred eeecccccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 182 FKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
.+..+.+|...|--++|+|. .+.|++++.|.+|.+||+.+|+.+..+ .|...|+++.|+.||.+|++++.|..|+
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNRDGSLLCTTCKDKKVR 198 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec----CCCCeEEEEEeccCCceeeeecccceeE
Confidence 34557899999999999995 467899999999999999999999998 6999999999999999999999999999
Q ss_pred EEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc----CCEEEEEEcCCCCCCceeecCcccceeEEEEE
Q 007229 261 VWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL----GGIISIFSASNLDKAPLSFSGHVKNVSTLTAL 336 (612)
Q Consensus 261 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 336 (612)
+||. .+++.+..-..+..... ...+...+..+++.+. +..+.+||......+.....-..+.=.-+-|.
T Consensus 199 v~dp----r~~~~v~e~~~heG~k~---~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy 271 (472)
T KOG0303|consen 199 VIDP----RRGTVVSEGVAHEGAKP---ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY 271 (472)
T ss_pred EEcC----CCCcEeeecccccCCCc---ceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence 9999 88888877644432211 1222222333555544 56899999877666643322222222223344
Q ss_pred ecCCcEEE-EEecCCcEEEEEcCCcee
Q 007229 337 KISQQTIL-SSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 337 ~~~~~~l~-~~~~dg~i~~wd~~~~~~ 362 (612)
+++.++++ +|-.|+.|+.|.+.....
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCc
Confidence 54456555 566789999998877653
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=3.3e-21 Score=178.05 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=216.6
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+.+..+.+|...|+|+.|...|.+ +++|+.|..++||..++..+....+||++.|+.++.+.+..++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 445667899999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
.+.++.++..+ .+|++.|++++|+|-. +.+.||++++||. . ...+.....+
T Consensus 260 rl~~~~pvsvL---rghtgavtaiafsP~~----sss~dgt~~~wd~----r-~~~~~y~prp----------------- 310 (1113)
T KOG0644|consen 260 RLPDGAPVSVL---RGHTGAVTAIAFSPRA----SSSDDGTCRIWDA----R-LEPRIYVPRP----------------- 310 (1113)
T ss_pred ecCCCchHHHH---hccccceeeeccCccc----cCCCCCceEeccc----c-ccccccCCCC-----------------
Confidence 99999999888 4999999999999955 6778999999998 3 1111000000
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
..+. ....+.++.+. ..+..+++++.|+.-..|..........
T Consensus 311 -----------------------~~~~-~~~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l~~~~~------------ 353 (1113)
T KOG0644|consen 311 -----------------------LKFT-EKDLVDSILFE-NNGDRFLTGSRDGEARNHEFEQLAWRSN------------ 353 (1113)
T ss_pred -----------------------CCcc-cccceeeeecc-ccccccccccCCcccccchhhHhhhhcc------------
Confidence 0000 11223333333 1266778888887776664332111000
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
. +.-+.
T Consensus 354 ---~-----------------------------------------------------------------------lif~t 359 (1113)
T KOG0644|consen 354 ---L-----------------------------------------------------------------------LIFVT 359 (1113)
T ss_pred ---c-----------------------------------------------------------------------eEEEe
Confidence 0 00000
Q ss_pred EccC-CCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCcceeeecccc
Q 007229 458 IAPD-GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSKEVKLNNMLF 535 (612)
Q Consensus 458 ~s~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 535 (612)
.+.| ..+.+++-.+-.+.+|++.++.+ ...+.+|...+..+.++| +.+...+++.||...|||+-.+..+.....+
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence 1111 13555666677899999999987 678889999999999999 5556678999999999999998887666666
Q ss_pred cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 536 ~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|. .+..-+||+||..++....-|.++|.....
T Consensus 438 h~-kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 438 HG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred cc-eeeccccCCCCceEecCCCCCceEEeccCC
Confidence 54 566779999999999988889999987654
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.2e-19 Score=170.18 Aligned_cols=212 Identities=17% Similarity=0.163 Sum_probs=155.0
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.+||.+... .+.+..|...+...+|||||+.||.++.+ ..|.+||+.+++.. .+....+....++|+|||+
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCCC
Confidence 589999987655 45577888999999999999999987643 46999999887531 2232333455789999999
Q ss_pred EEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-eeecccccccce
Q 007229 116 RIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSNFV 193 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v 193 (612)
+|+.+....+ ...||.++ .+.....+..+...+....|+|||+.++++...++...+|++.... ....+ .+..
T Consensus 261 ~La~~~~~~g--~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 261 RLAFASSKDG--VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred EEEEEEecCC--cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 9998764332 25677776 3445666777888889999999999756666677888888764322 12222 3333
Q ss_pred EEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
....|+|||++|+..+.++ +.+||+.+++...... .. ....+.|+|||++|+.++.++...+|.+
T Consensus 336 ~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 4578999999998887755 6669998887653321 11 2356789999999999999998888886
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=6.6e-19 Score=142.54 Aligned_cols=249 Identities=17% Similarity=0.178 Sum_probs=185.3
Q ss_pred CCceEEEEECC--C-CCEEEEee----CcCeEEEeecC--CCceeeeeeeecCCCeEEEEECCCCC-----EEEEEeCCC
Q 007229 59 GYPVTVARYSP--N-GEWIASAD----VSGSVRIWGTH--NGFVLKNEFKVLSGRIDDLQWSPDGL-----RIVACGDGK 124 (612)
Q Consensus 59 ~~~v~~~~~s~--d-~~~las~~----~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~s~~~~-----~l~~~~~~~ 124 (612)
...+.++.||. + +.+||.|+ ..+.|.|-.+. +++.+...-..|..+++.+.|.|+.+ .||++++
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--
Confidence 45677888884 3 35788887 34566666554 44433333357888999999999873 4555544
Q ss_pred CeeeEEEEEecCCce-e---ee-----eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee---eecccccccc
Q 007229 125 GKSFVRAFMWDSGTT-V---GD-----FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF---KLSHREHSNF 192 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~-~---~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~ 192 (612)
++++|.....+. + .. -..+..++++..|+.-.+.++.+++-|-+..+||++++.. ...+-.|..+
T Consensus 122 ---~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 122 ---FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred ---eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 467776663221 1 11 1346689999999998888899999999999999998733 5567899999
Q ss_pred eEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCC-CcEEEEEeecCCC
Q 007229 193 VNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSAD-KSAKVWEILEDGS 269 (612)
Q Consensus 193 v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d-g~i~iw~~~~~~~ 269 (612)
|..++|...+ +.+|+.+.||.+|+||++..+.-..+........+...++|++ |-+++++-..| ..|.+.|+
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi----- 273 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI----- 273 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe-----
Confidence 9999999865 4788999999999999988765544432223366788889987 55677766554 35666666
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 349 (612)
+.+..++..+++|...|+.++|.+.....+++++.|
T Consensus 274 --------------------------------------------R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 274 --------------------------------------------RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred --------------------------------------------cCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 566677788999999999999997778999999999
Q ss_pred CcEEEEEcCCce
Q 007229 350 GAIIKWIRGVGY 361 (612)
Q Consensus 350 g~i~~wd~~~~~ 361 (612)
....+||+....
T Consensus 310 ~qaliWDl~q~~ 321 (364)
T KOG0290|consen 310 CQALIWDLQQMP 321 (364)
T ss_pred ceEEEEeccccc
Confidence 999999987543
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=6.1e-19 Score=144.86 Aligned_cols=238 Identities=14% Similarity=0.183 Sum_probs=183.4
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc---eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL---HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.+.|+|.||++|+..+|.+. .+.|.||.....+ ..+++..|...|++++|+|..+.|++++.|..-.||....+..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 45789999999999999998 5699999887554 6778999999999999999999999999999999999944332
Q ss_pred --eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce----eeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 94 --LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 94 --~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
....+..+....+++.|+|.+..+|+++... .+.|+-++.... .+.-+.+...|++++|+|++- +++.|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs 165 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGS 165 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccc
Confidence 2335667899999999999999999999887 677777764332 122345678899999999998 799999
Q ss_pred cCCeEEEEeC-----C-------------CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC-eeeee
Q 007229 168 EDFLVNFYEG-----P-------------PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE-KIGEF 228 (612)
Q Consensus 168 ~d~~i~~wd~-----~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~ 228 (612)
.|+..+++.. + -|+++..+....+.+..+.|+|+|+.|+-.+.|..+.+-|..... .+...
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 9999999952 1 123333444456789999999999999999999999999977664 23333
Q ss_pred eccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 229 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
. ...-+..++.|-.+.. ++.++.|..=.++.
T Consensus 246 ~---~~~lP~ls~~~ise~~-vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 246 A---TAQLPLLSVSWISENS-VVAAGYDCGPVLFV 276 (361)
T ss_pred h---hccCCceeeEeecCCc-eeecCCCCCceEEE
Confidence 1 2336778888876554 55555653333333
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.7e-17 Score=152.98 Aligned_cols=271 Identities=12% Similarity=0.101 Sum_probs=177.1
Q ss_pred cCCEEEEEeCCC-Cc--eeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCC-CceeeeeeeecCCCeEEEEEC
Q 007229 37 NGRSVLIRYLDK-PL--HVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHN-GFVLKNEFKVLSGRIDDLQWS 111 (612)
Q Consensus 37 ~~~~i~i~~~~~-~~--~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~s 111 (612)
.++.|.+|++.+ ++ .+..+. +.+....++++||+++|++++ .++.|.+|++.. ++..........+....++|+
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~ 88 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD 88 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC
Confidence 479999999964 33 334443 446678899999999987664 578899999973 331111111233467889999
Q ss_pred CCCCEEEEEeCCCCeeeEEEEEecC-C---ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec--
Q 007229 112 PDGLRIVACGDGKGKSFVRAFMWDS-G---TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-- 185 (612)
Q Consensus 112 ~~~~~l~~~~~~~~~~~i~i~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-- 185 (612)
|++++|+++....+ .+.+|..++ + +.+..+. +......++++|++++++++...++.|.+||+.+...+..
T Consensus 89 ~~g~~l~v~~~~~~--~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 89 HQGRFLFSASYNAN--CVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred CCCCEEEEEEcCCC--eEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 99999999876543 467777763 2 2233333 2344677899999998777888889999999976332211
Q ss_pred ---cc-ccccceEEEEECCCCCeEEEEEc-CCcEEEEecCC--CCe--eeeeecc-C--CccccEEEEEEecCCCEEEEE
Q 007229 186 ---HR-EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKS--GEK--IGEFSSE-D--GHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 186 ---~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~--~~~--~~~~~~~-~--~~~~~v~~i~~~~~~~~l~~~ 253 (612)
.. ........++|+|+|++++++.. +++|.+|+++. ++. +..+... . .+......+.++|++++++++
T Consensus 166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 11 11234678999999999988877 89999999974 322 3332110 0 111233468899999999988
Q ss_pred eC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc-CCEEEEEEcCC
Q 007229 254 SA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL-GGIISIFSASN 315 (612)
Q Consensus 254 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 315 (612)
.. ++.|.+|++...+...+.+...... .....+.+..+++.++++.. ++.|.+|++..
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~~----~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQPTE----TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEecc----ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 54 6899999994332222333333221 11122344455778887765 88999998653
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.3e-18 Score=133.68 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=175.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCC---------C-ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDK---------P-LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~---------~-~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.|.+-++||.+++|++++ .|.|.+..+++ + ..+....+|+++|..++|.. .+|++++ ||.|+=|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 466778999999999998 79999998752 1 23344579999999999993 3677775 599999987
Q ss_pred CCCce-------eeeeeeecC-----CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEc
Q 007229 89 HNGFV-------LKNEFKVLS-----GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFK 156 (612)
Q Consensus 89 ~~~~~-------~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (612)
..... .......|. ..|+++-..|....++.++.|+ .+.-++.++|+..+.+++|++.|.++.--
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~---~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG---VIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe---EEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 64322 111122232 3689999999888887777666 45666667999999999999999999984
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccc---------c-ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE---------H-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---------~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
.... .+++|++||++|+||.++++.+..+.. | ...|-+++.+ ..+|++|+ ...+.+|+++..++..
T Consensus 166 ~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 166 NANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred ccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceE
Confidence 4444 499999999999999999998876542 2 2345666654 56888765 5679999999999999
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+ ....++..+.|.. +.+++++..+.+.-|.+
T Consensus 242 vf----pipa~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 242 VF----PIPARVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EE----ecccceeEeeeec--ceEEEeccccceeeeee
Confidence 99 6677888899974 45778888888999987
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-18 Score=146.33 Aligned_cols=310 Identities=12% Similarity=0.106 Sum_probs=216.7
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCC------CCceeeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEe
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLD------KPLHVEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIW 86 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~------~~~~~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iw 86 (612)
.+|.|.|+++.||.++++|++|+ +..+++|+++ +++++.... .|...|.|++|...++.|.+|..+++|.+-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 36889999999999999999999 6899999986 456666544 356899999999999999999999999999
Q ss_pred ecCCCceeeeeeeec---CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc-e--eeeeccCCceEEEEEEcCCCC
Q 007229 87 GTHNGFVLKNEFKVL---SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT-T--VGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 87 d~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~ 160 (612)
|+++.+.+. ...| .+.|+.+..+|-...|++.+.++ .+.+|+..... . +..+.........+.|+|..+
T Consensus 133 DiEt~qsi~--V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 133 DIETKQSIY--VANENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred ecccceeee--eecccCcccceeecccCCCCceEEEEecCc---eEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999987543 2233 35899999999999999999888 34444433222 1 222333456778899999999
Q ss_pred EEEEEeecCCeEEEEeCCCCee-eec------ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe-eeeeec-c
Q 007229 161 FRIATCGEDFLVNFYEGPPFKF-KLS------HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK-IGEFSS-E 231 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~-~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~-~ 231 (612)
.+|++.+..+-+-+||.+.... +.. ++.....-.+..|+|+|+.+++.-....-.+||+.+..+ +..+.. +
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 8999999999999999765432 111 111122336778999999999877666667888876443 223310 0
Q ss_pred C--CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 232 D--GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 232 ~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
. .....+.+++|..|-. +++|+.+=.|++|.+......+...+.-.... ..... +
T Consensus 288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~--~~~~~----------~---------- 344 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEE--EMPSE----------I---------- 344 (609)
T ss_pred Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchh--hCchh----------h----------
Confidence 0 1124577888886554 99999999999999954333332111100000 00000 0
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
--......+++|..-+..+.|++. ..+|++.+....+++|...
T Consensus 345 -----~i~~~~~VLrGHRSv~NQVRF~~H-~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 -----FIEKELTVLRGHRSVPNQVRFSQH-NNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred -----eecceeEEEecccccccceeecCC-cceEeccchhhheeccccc
Confidence 002345678899999999999932 6788888999999999643
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.9e-19 Score=152.71 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=150.9
Q ss_pred eeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee-
Q 007229 21 GILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF- 98 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~- 98 (612)
-.+++|++||..+++++ ||.++||+.++...+..+..|...|.++.|||||++||+-+.| ..+||+..++..+...-
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 37899999999999998 9999999988888888888999999999999999999999999 99999999996433211
Q ss_pred eecCCCeEEEEECCCC---CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 99 KVLSGRIDDLQWSPDG---LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~---~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
.........+.|+.|+ .+++++.... ++ .+.. ..+.+|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~----------------------------------~~-~v~~----~~~~~w 266 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFP----------------------------------GG-GVRL----CDISLW 266 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCC----------------------------------CC-ceeE----EEeeee
Confidence 2223345556666555 2222111111 00 0111 123344
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
+-...-...+.......|.+++.++||++++.|+.||.|.|++..+-+.++-. ++.|...|+.+.|+||.+++++.+.
T Consensus 267 ~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 267 SGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred ccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCccccccc
Confidence 43211111122223346999999999999999999999999999988888777 4689999999999999999999999
Q ss_pred CCcEEEEEe
Q 007229 256 DKSAKVWEI 264 (612)
Q Consensus 256 dg~i~iw~~ 264 (612)
+....+..+
T Consensus 345 ~~~~~v~~l 353 (398)
T KOG0771|consen 345 DNEAAVTKL 353 (398)
T ss_pred CCceeEEEE
Confidence 999999888
No 199
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=4.5e-17 Score=148.52 Aligned_cols=331 Identities=14% Similarity=0.057 Sum_probs=200.7
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
.++++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++ ........
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i----~~G~~~~~ 82 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI----KVGGNPRG 82 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----E-SSEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----ecCCCcce
Confidence 34567778899999999999999888765554456789999999999999999999999999999999 44556789
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccc--cceeeeeeec--cCC-EEEEEEcCCEEEEEEcC
Q 007229 241 VSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNA--VEDMLVGCLW--QND-HLITVSLGGIISIFSAS 314 (612)
Q Consensus 241 i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~-~~~~~~~~~~i~~~~~~ 314 (612)
+++++||++++++. .++.+.++|. ++.+.++.+....... ......++.. ... .++..-..+.+.+.|..
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~----~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDA----ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEET----TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred EEEcCCCCEEEEEecCCCceeEecc----ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 99999999998776 5799999999 8999998886543221 2223333322 233 45555566899999877
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEE-EEEecCCcEEEEEcCCceeeeecee----cccceEEEEeeccEEEEecCC
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTI-LSSSYDGAIIKWIRGVGYSSKLEKK----YDARIKCLAAVEEVIFTAGFD 389 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~i~~~~~~~~~l~~~~~~ 389 (612)
....................+.+ +++++ ++...+..|-++|..+++....... |..+.
T Consensus 159 d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~---------------- 221 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG---------------- 221 (369)
T ss_dssp TSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE----------------
T ss_pred cccccceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeecccccccccc----------------
Confidence 66443333333344555565553 25555 4456677888888887665443210 11111
Q ss_pred CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc--eEEEEEEccCCCeEEE
Q 007229 390 NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF--TVTACAIAPDGSEAIV 467 (612)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~ 467 (612)
..+.|.. ++.. ....+...+.
T Consensus 222 -------------------------------------------------------~~~php~~g~vw~--~~~~~~~~~~ 244 (369)
T PF02239_consen 222 -------------------------------------------------------ANFPHPGFGPVWA--TSGLGYFAIP 244 (369)
T ss_dssp -------------------------------------------------------EEEEETTTEEEEE--EEBSSSSEEE
T ss_pred -------------------------------------------------------ccccCCCcceEEe--eccccceecc
Confidence 1111111 1111 1222333322
Q ss_pred EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE----cCCCeEEEEecCCcceeeecccccccceeEE
Q 007229 468 GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA----DGNREAIVWDRVSKEVKLNNMLFHTARINCL 543 (612)
Q Consensus 468 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 543 (612)
.-....+.+||..+.+. ...++...++ .-+..+|+++++.+. ...++|.++|.++.+.......+....+..+
T Consensus 245 ~ig~~~v~v~d~~~wkv--v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKV--VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEE--TTT-STTTBTSE--EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred cccCCccccchhhcCeE--EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 22333566788877776 5556655556 778889999999988 5568999999999977644333233459999
Q ss_pred EecCCCcEEEEee--cCcEEEEEEccCCCcceeeeec
Q 007229 544 AWSPSSTMVATGS--IDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 544 ~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
.|++||+++..+. .++.|.+||..+ . +.+..+.
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D~~T-l-~~~~~i~ 356 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYDAKT-L-KEKKRIP 356 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEETTT-T-EEEEEEE
T ss_pred EECCCCCEEEEEEecCCCEEEEEECCC-c-EEEEEEE
Confidence 9999999765443 344799999998 5 5555544
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.2e-18 Score=146.40 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=69.8
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
...|++++.|+||+++|.|+.||.|.|++..+.+.+......|..-|+.+.|+||.+++++.+.|....|..+.-
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 457999999999999999999999999999999998777888999999999999999999999999999988765
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=4.3e-18 Score=159.06 Aligned_cols=275 Identities=14% Similarity=0.166 Sum_probs=198.6
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee--e----eceecccceEEEEe--
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS--K----LEKKYDARIKCLAA-- 378 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~----~~~~~~~~i~~~~~-- 378 (612)
.+.+|++..+..+...+. -...|.++.|++.+..+++.|..+|.|.+||++..... . ....|..++..+.+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 688999888855544443 56789999999777999999999999999999987763 2 12228888888888
Q ss_pred --eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 379 --VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 379 --~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
.+..+++++.||.|..|+++.-............ ............++++
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~----------------------------~~~~~~~~~~~~~t~~ 353 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK----------------------------KHKGQQSSKAVGATSL 353 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccc----------------------------cccccccccccceeeE
Confidence 3355999999999999987655432110000000 0001111223468889
Q ss_pred EEcc-CCCeEEEEecCCeEEEEEccCccccc------ceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC-Ccce
Q 007229 457 AIAP-DGSEAIVGGQNGKLHIYSISGNTLTE------EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV-SKEV 528 (612)
Q Consensus 457 ~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~ 528 (612)
+|.+ +-..+++|+++|.|..-+..+.+... ......|.++|+++.++|=+..++..+.|-+++||... ...+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 9988 45678899999988885444333222 33456788999999999977655555559999999988 4444
Q ss_pred eeecccccccceeEEEecCCCc-EEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEE
Q 007229 529 KLNNMLFHTARINCLAWSPSST-MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRV 606 (612)
Q Consensus 529 ~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~ 606 (612)
+ ..+..+...+++++|||-.. .++++..||.+.+||+.............+......+.|+ +++.|+.|...|.+++
T Consensus 434 l-~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 434 L-LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred c-hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 4 44555778899999999764 6778888999999999874435556665566666777777 6999999999999999
Q ss_pred EEecc
Q 007229 607 WRLAT 611 (612)
Q Consensus 607 w~~~~ 611 (612)
|++..
T Consensus 513 ~~l~~ 517 (555)
T KOG1587|consen 513 LKLSE 517 (555)
T ss_pred EEcCc
Confidence 99853
No 202
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=9.1e-19 Score=154.45 Aligned_cols=137 Identities=24% Similarity=0.404 Sum_probs=111.0
Q ss_pred eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCcE
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKSA 259 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i 259 (612)
+...+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+. .+|...|.++.|-| +.+.+++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceE
Confidence 345688999999999999999999999999999999999888888884 58999999999999 56789999999999
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
+++|+....+.+.- .........+..|...|..++..+..
T Consensus 120 ~lfdl~~~~~~~~d----------------------------------------~~~~~~~~~~~cht~rVKria~~p~~ 159 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMD----------------------------------------HGMEETTRCWSCHTDRVKRIATAPNG 159 (758)
T ss_pred EEEecccccccccc----------------------------------------cCccchhhhhhhhhhhhhheecCCCC
Confidence 99999321111110 11122334556788899999888766
Q ss_pred CcEEEEEecCCcEEEEEcCCc
Q 007229 340 QQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~ 360 (612)
...+.++++||+++.+|++..
T Consensus 160 PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 160 PHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred CceEEEecCCcceeeecccCC
Confidence 789999999999999998864
No 203
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.81 E-value=5.1e-16 Score=148.27 Aligned_cols=226 Identities=16% Similarity=0.137 Sum_probs=168.4
Q ss_pred CEEEEecCCEEEEEeCCCCceeeE------eccC-----------------------------------CCceEEEEECC
Q 007229 31 DTILYCNGRSVLIRYLDKPLHVEF------YGEH-----------------------------------GYPVTVARYSP 69 (612)
Q Consensus 31 ~~l~~~~~~~i~i~~~~~~~~~~~------~~~h-----------------------------------~~~v~~~~~s~ 69 (612)
++|.++.+-.|.+||+..+..+.. +..| .+.|....+..
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g~~l~~ 97 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIERFSDWIFGAKLFE 97 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhhhccccccccchhh
Confidence 789999999999999987754332 2234 01122222333
Q ss_pred CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC
Q 007229 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH 146 (612)
Q Consensus 70 d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 146 (612)
+.+.++.+..+..+.+||...+..+......... ...-+.++++.-++++++--+ .+.+|.|...++-..+.+|
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~---~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG---EIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc---cEEEEeccccCCcceeccc
Confidence 4567888888889999999887633222211111 122344677777888877666 3566666633333378999
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
.+.+.++.++.+|.+ +++.++|.++|+|++.+.+... +.-+|+..|..+.|.|+ ++++++.|-+.++|+. .+..+
T Consensus 175 eG~iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l 250 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQL 250 (967)
T ss_pred CCceEEEEEccCCcE-EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-cccee
Confidence 999999999999995 9999999999999999988776 56689999999999998 8999999999999974 45555
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..+. ......+..++..++....++++.|+.+++|++.
T Consensus 251 ~~y~--~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 251 EVYD--EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred hhhh--hhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 5552 2334678999999999999999999999999983
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.81 E-value=1.3e-17 Score=161.34 Aligned_cols=306 Identities=17% Similarity=0.137 Sum_probs=202.6
Q ss_pred CCeeeecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCe-------eeeeeccCCccccEEEEEEecCCCEE
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEK-------IGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.|..+..+..|...+..++.++.. .++++|+.||+|++||.+.-.. ..++ ......+..+...+.++.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty---s~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY---SPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE---eccCCceEEEEeccCCCeE
Confidence 467778888999999999988765 8999999999999999864221 1222 1356788999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
|+++.||.|++.+++............ ++-+ .......+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~-------------------------------ri~n----------~~~~g~vv 1152 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQV-------------------------------RIPN----------LKKDGVVV 1152 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeee-------------------------------eccc----------ccCCCceE
Confidence 999999999999983210000000000 0000 00111112
Q ss_pred eEEEEEecCCc-EEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceec
Q 007229 331 STLTALKISQQ-TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHID 409 (612)
Q Consensus 331 ~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (612)
..-++...... .++.+...+.|..||++........ ..
T Consensus 1153 ~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l-------------------------------k~---------- 1191 (1431)
T KOG1240|consen 1153 SMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL-------------------------------KN---------- 1191 (1431)
T ss_pred EeecccccccceeEEEEEeccceEEecchhhhhHHhh-------------------------------hc----------
Confidence 22223322244 6777778888888887754322211 11
Q ss_pred cCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee
Q 007229 410 VGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV 489 (612)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 489 (612)
....+.|++++.+|.+.++++|+..|.+.+||++-+.+.....
T Consensus 1192 -------------------------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1192 -------------------------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred -------------------------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 1123469999999999999999999999999999877644444
Q ss_pred eccccCceEEEEEcCC---CcEEEEEc--CCCeEEEEecCCcceeeecccc------------------cccceeEEEec
Q 007229 490 LEKHRGAITVIQYSPD---VSMFASAD--GNREAIVWDRVSKEVKLNNMLF------------------HTARINCLAWS 546 (612)
Q Consensus 490 ~~~~~~~i~~~~~s~~---~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~------------------~~~~i~~~~~s 546 (612)
.+. ..+|+.+..+|- ....++++ ..+.|.+|++.++.+......+ +..+.....+.
T Consensus 1235 ~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1235 HPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred Ccc-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence 443 478888888773 23444443 5789999999998664322221 11112233444
Q ss_pred CCCcEEEEeecCcEEEEEEccCCCcce-----------------------------------------------ee----
Q 007229 547 PSSTMVATGSIDTCVIIYEIGKPASSR-----------------------------------------------IT---- 575 (612)
Q Consensus 547 ~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------------------------------------------~~---- 575 (612)
.-+.++.+|+.|..|+.||...+. .. ..
T Consensus 1314 ~~~~~~ltggsd~kIR~wD~~~p~-~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~ 1392 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPE-ISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRP 1392 (1431)
T ss_pred cCCceeeecCCccceeeccCCCcc-cccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhccccccccc
Confidence 455688999999999999976522 00 00
Q ss_pred ----eecccccCeeeEEEe--cCceEEEccCCCeEEEEE
Q 007229 576 ----IKNAHLGGVYGVAFM--DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 576 ----~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~w~ 608 (612)
.-..|.++|+++++. +-.+|++++.||.|++|.
T Consensus 1393 ~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1393 GPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 112577899999998 555799999999999994
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.4e-19 Score=154.75 Aligned_cols=310 Identities=20% Similarity=0.246 Sum_probs=228.6
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCc
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKS 258 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~ 258 (612)
.+...+..|.+.|..+.|+..|..|++++.|..|.+||...++....+ ..+|...|....|.| +.+.+++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCc
Confidence 344567889999999999999999999999999999999999888877 458988888888988 4567999999999
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI 338 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (612)
+++=.+. .++.+.. ...+..|.++|..++..+.
T Consensus 211 vr~s~i~---~t~~~e~--------------------------------------------t~rl~~h~g~vhklav~p~ 243 (559)
T KOG1334|consen 211 VRVSEIL---ETGYVEN--------------------------------------------TKRLAPHEGPVHKLAVEPD 243 (559)
T ss_pred eeeeeec---cccceec--------------------------------------------ceecccccCccceeeecCC
Confidence 9987772 1111111 2334458899999988876
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeecee---ccc---ceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceec
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKK---YDA---RIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHID 409 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~---~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (612)
....|.+++.|+.+.-+|++.......... +.. ....++. ....+++++.|..+++||.+.-........
T Consensus 244 sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~- 322 (559)
T KOG1334|consen 244 SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGV- 322 (559)
T ss_pred CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccch-
Confidence 689999999999999999887665443322 222 3344555 456889999999999998765443200000
Q ss_pred cCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc-----
Q 007229 410 VGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL----- 484 (612)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~----- 484 (612)
. -.+.| ..+.. ...-.|++++|+.++.-|.+...|-.|+++.-.-+.-
T Consensus 323 ----~--~~f~p--------------------~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 323 ----L--DKFCP--------------------HHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ----h--hhcCC--------------------ccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 0 00000 00111 2345699999999888888888888999995432211
Q ss_pred ------ccceeeccccCc--eEEEE-EcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 485 ------TEEMVLEKHRGA--ITVIQ-YSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 485 ------~~~~~~~~~~~~--i~~~~-~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
......++|.+. |..+- |-|...|+++|+.-|.|.||+-.+++.+ ..+.+...-|+||.-+|--..||+.
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii-~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII-RFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH-HHhhcccceEeccCCCCCCchhhcc
Confidence 112236677653 55555 4688899999999999999999999887 5666666799999999999999999
Q ss_pred ecCcEEEEEEccC
Q 007229 556 SIDTCVIIYEIGK 568 (612)
Q Consensus 556 ~~d~~i~iwd~~~ 568 (612)
+-|.-|+||-..+
T Consensus 455 Gid~DVKIWTP~~ 467 (559)
T KOG1334|consen 455 GIDHDVKIWTPLT 467 (559)
T ss_pred CCccceeeecCCc
Confidence 9999999998744
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.2e-17 Score=159.05 Aligned_cols=294 Identities=15% Similarity=0.249 Sum_probs=207.1
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc---ccceEEEEECC--CCCeEEEEEcCCcEEEEecCCC-
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH---SNFVNCIRFSP--DGSKLISVSSDRKGLIYDGKSG- 222 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~- 222 (612)
+...+.|+|-.+ .++++...-.|++||.+.++....+..+ ...|+.+.+-. |..++++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 456788899888 5888887889999999999988776543 34688888865 4568999999999999974322
Q ss_pred ----CeeeeeeccC----CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 223 ----EKIGEFSSED----GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 223 ----~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
+.+....... +..+.=.-+.|.....+|++++.-..|++||. ........+...... .+.++..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa----~~E~~~~diP~~s~t----~vTaLS~ 1216 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDA----HKEQVVADIPYGSST----LVTALSA 1216 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEec----ccceeEeecccCCCc----cceeecc
Confidence 2222221110 11111144567776667777777889999999 777777776655322 2222222
Q ss_pred c---CCEEEEEEcCCEEEEEEcCCCCC--CceeecCcccc--eeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 295 Q---NDHLITVSLGGIISIFSASNLDK--APLSFSGHVKN--VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 295 ~---~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
+ ++.+++|..||.+++||.+.... .+...+.|+.. |..+.+...+-..+++|+.||.|++||++.........
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 2 78999999999999999776544 67778888887 87777774334479999999999999998752211111
Q ss_pred ecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee
Q 007229 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI 447 (612)
Q Consensus 368 ~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (612)
.....
T Consensus 1297 ---------------------------------------------------------------------------iv~~~ 1301 (1387)
T KOG1517|consen 1297 ---------------------------------------------------------------------------IVAHW 1301 (1387)
T ss_pred ---------------------------------------------------------------------------eeecc
Confidence 00000
Q ss_pred cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee----ccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 448 DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL----EKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 448 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
+.++..+++..+++...+|+|+. +.|.||++.+.++-..+.. ....+.+.|++|+|-.-+||+|+.|.+|.||..
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 01224789999999999999998 9999999987654222211 123456899999999999999999999999987
Q ss_pred CCcc
Q 007229 524 VSKE 527 (612)
Q Consensus 524 ~~~~ 527 (612)
....
T Consensus 1381 ~k~~ 1384 (1387)
T KOG1517|consen 1381 EKPR 1384 (1387)
T ss_pred CCcC
Confidence 6554
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=3.1e-18 Score=162.38 Aligned_cols=215 Identities=18% Similarity=0.257 Sum_probs=153.2
Q ss_pred CCCceeEEEEccCCCEEEEec-C---CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEe--ecC
Q 007229 17 ERGRGILISGNPKTDTILYCN-G---RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIW--GTH 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iw--d~~ 89 (612)
+.+.+.+.+|||||+.|++.+ + ..|++||+.+++... +....+...+++|||||+.|+.++ .+|.+.|| |+.
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 455789999999999999986 2 479999999876433 222223344789999999988764 67876665 555
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
+++ ...+..+...+....|+|||+.|+.++...+ ..+||.++. +.....+ .+.. ....|+|+|++ ++..+.
T Consensus 281 ~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g--~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~-ia~~~~ 352 (429)
T PRK01742 281 GGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSG--SPQVYRMSASGGGASLV-GGRG--YSAQISADGKT-LVMING 352 (429)
T ss_pred CCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE-EEEEcC
Confidence 554 3356667777889999999999988775433 257888773 2223333 3433 46789999996 666655
Q ss_pred CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEec--CCCCeeeeeeccCCccccEEEEEEecC
Q 007229 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG--KSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
++ +.+||+.+++.......+ ....+.|+|||++|++++.++...+|.+ .+|+....+ ..|.+.+...+|+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l---~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL---PGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc---cCCCCCCCCcccCCC
Confidence 65 556999888754322222 2356789999999999999998888875 357777777 266777888999874
No 208
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=166.69 Aligned_cols=283 Identities=17% Similarity=0.186 Sum_probs=213.3
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
+.+.+|...|+|+.|...|.++++++++. .++||..+++.++...+||.+.|+.++.+.+.- ++++++.|..|++|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~---lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDR---LVKIWSMETARCLASCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccc---eeeeeeccchhhhccCCCCccccchhccchhhh-hhhhcccCceEEEE
Confidence 35668999999999999999999999998 678999889999999999999999999999887 69999999999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec-cCCccccEEEEEEecCCCEEEEEe
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS-EDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
.+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+-.-.+..... .......+.++.|..++..+++++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999999999999999999965 678899999999872211111110 112335677788888888899999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.|+.-..|.+ ... .+ +...+.-+.
T Consensus 336 ~d~ea~n~e~----~~l---------------------~~-------------------------------~~~~lif~t 359 (1113)
T KOG0644|consen 336 RDGEARNHEF----EQL---------------------AW-------------------------------RSNLLIFVT 359 (1113)
T ss_pred CCcccccchh----hHh---------------------hh-------------------------------hccceEEEe
Confidence 9998888876 111 01 111111111
Q ss_pred EEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceeccC
Q 007229 335 ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG 411 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 411 (612)
.+.....+.+++-.+-.+++|++.++........|...+..+.+ +.....+++.||...+||+-.+.......
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---- 435 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---- 435 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee----
Confidence 11011245555666778899999999888888888888888887 66778899999999999998776541111
Q ss_pred CCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCc
Q 007229 412 SQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGN 482 (612)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 482 (612)
...+.+...+||+||..++....-|.++|.....+
T Consensus 436 ------------------------------------~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 436 ------------------------------------IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ------------------------------------cccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 11234556677888777777777777777765433
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5e-19 Score=153.71 Aligned_cols=310 Identities=17% Similarity=0.195 Sum_probs=230.8
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFV 129 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i 129 (612)
...|.+|.+.|..|.|...|..|++|+.|..|.+||...+.....-..+|...|....|-|. .+.+++++.++. +
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq---v 211 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ---V 211 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc---e
Confidence 44578999999999999999999999999999999999998777677899999999999884 467888888884 4
Q ss_pred EEEEec-CCce--eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc---ccccc---ceEEEEECC
Q 007229 130 RAFMWD-SGTT--VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH---REHSN---FVNCIRFSP 200 (612)
Q Consensus 130 ~i~~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~---~v~~~~~s~ 200 (612)
++-... ++.. ...+..|.++|..++.-|+.++-|.+++.|+.+.-.|++.......+ ..+.. ...+++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 554444 3332 45567899999999999999999999999999999998876544332 22333 567889998
Q ss_pred CCC-eEEEEEcCCcEEEEecCCCCee------eeeec---cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC
Q 007229 201 DGS-KLISVSSDRKGLIYDGKSGEKI------GEFSS---EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 201 ~~~-~l~~~~~dg~i~vwd~~~~~~~------~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
... ++++++.|..+++||.+.-... ..+.. .....-.|++++|+.++.-|++...|-.|++++-.. ..
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~--~~ 369 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM--GD 369 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc--cc
Confidence 654 8899999999999997643221 22210 112345699999998777777777888899985411 11
Q ss_pred CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc--ceeEEEEEecCCcEEEEEec
Q 007229 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--NVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~ 348 (612)
+........ ........+++|.. .|..+.|..+...++++|+.
T Consensus 370 G~~p~~~s~-----------------------------------~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 370 GSEPDPSSP-----------------------------------REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred CCCCCCCcc-----------------------------------hhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 100000000 00111123566654 68888888555789999999
Q ss_pred CCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCC
Q 007229 349 DGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 349 dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
=|.|.+|+-.+++.+........-|+||.. .--.|++.+.|..|++|...+..
T Consensus 415 CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 415 CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 999999999999999888776668999999 45679999999999999874433
No 210
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=5.7e-19 Score=156.35 Aligned_cols=251 Identities=16% Similarity=0.228 Sum_probs=188.2
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCC--------CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEE
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDK--------PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRI 85 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~--------~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~i 85 (612)
..+...+.+++|.|-...|++++ ++.|.+|++.. -+++.+|.+|.++|.|++++++++.+.+|+.||+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 35667888999999999999999 89999999932 2467789999999999999999999999999999999
Q ss_pred eecCCC---------ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccC--CceEEE
Q 007229 86 WGTHNG---------FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGH--SRRVLS 152 (612)
Q Consensus 86 wd~~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~--~~~v~~ 152 (612)
|++... ..+...+.+|.+.++.+++|+....|++++.++ +++.|+ ...+ ..|... .+...+
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg-----Tvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG-----TVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc-----eEEeeccCCcCc-cccCCccccCCcce
Confidence 965421 125668889999999999999999999999998 355555 3333 333322 233445
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
+.|-.......++...-+.--+++.+.......+.. -...+.-+.++|.+...+++..|+.|+++|..+++.+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 555444321222222223233333333333322221 1245777889999999999999999999999999999
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
... ..|...++++++.|+|-+|++++.|+.+++|.+ ....++....
T Consensus 525 ~s~---~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl----d~k~~~~es~ 570 (577)
T KOG0642|consen 525 HSM---VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL----DVKTCVLEST 570 (577)
T ss_pred hhe---eeccceecceeecCCCceEEeecCCceeehhhc----cchheeeccc
Confidence 887 389999999999999999999999999999999 6666655443
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.79 E-value=2.1e-15 Score=137.64 Aligned_cols=194 Identities=13% Similarity=0.116 Sum_probs=134.4
Q ss_pred EEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEE
Q 007229 75 ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCE 154 (612)
Q Consensus 75 as~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~ 154 (612)
++-..++.|.|.|..+.+ +...+......-..+.|+|||+++.+++.++ .+.+++..+++.+.+++... ....++
T Consensus 10 V~~~~~~~v~viD~~t~~-~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg---~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNK-VVARIPTGGAPHAGLKFSPDGRYLYVANRDG---TVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEGGGTEEEEEETTT-S-EEEEEE-STTEEEEEE-TT-SSEEEEEETTS---EEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred EEecCCCEEEEEECCCCe-EEEEEcCCCCceeEEEecCCCCEEEEEcCCC---eEEEEECCcccEEEEEecCC-CcceEE
Confidence 455678999999999988 4446655444445678999999999998776 68888888999999987644 467899
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeee
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIG 226 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~ 226 (612)
+++||+++++++..++.+.++|.++.+.++.+.. ....+.++..+|....++..-. .+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 9999998777888899999999999998887643 2346788888898885655555 4888888887765443
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEE-eCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
.-. ...........|+|++++++++ ..+..+.++|. .+++.+..+..
T Consensus 165 ~~~--i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~----~~~k~v~~i~~ 212 (369)
T PF02239_consen 165 VTT--IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT----KTGKLVALIDT 212 (369)
T ss_dssp EEE--EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET----TTTEEEEEEE-
T ss_pred eee--ecccccccccccCcccceeeecccccceeEEEee----ccceEEEEeec
Confidence 211 1344566788999999988765 44678999998 77776655543
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.79 E-value=3.8e-17 Score=143.99 Aligned_cols=214 Identities=18% Similarity=0.215 Sum_probs=154.2
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeecee----cccceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceeccCC
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKK----YDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 412 (612)
+--++.|-.-|.+.+.|....+..++... ....++|+.+ +...++.+-.+|.+.++|.......
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~--------- 255 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA--------- 255 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---------
Confidence 56677888889999998877444332222 4577888888 6677888888888888876221110
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK 492 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 492 (612)
.-.+-..-+++..+++...-+. .+... +....-
T Consensus 256 ---------------------------------------t~p~~~~~k~~~~f~i~t~ksk------~~rNP--v~~w~~ 288 (636)
T KOG2394|consen 256 ---------------------------------------TAPSYQALKDGDQFAILTSKSK------KTRNP--VARWHI 288 (636)
T ss_pred ---------------------------------------CCCcccccCCCCeeEEeeeecc------ccCCc--cceeEe
Confidence 0011112234444443322110 01111 233333
Q ss_pred ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc
Q 007229 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS 572 (612)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 572 (612)
-.+.|...+|+|||++||+.+.||.+||+|..+.+++ ......-+...|++|||||++|++|++|--|.||.+.. . +
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-r-R 365 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-R-R 365 (636)
T ss_pred ccccccceeEcCCCceEEEEecCceEEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-c-e
Confidence 4458999999999999999999999999999998876 44555667899999999999999999999999999998 6 7
Q ss_pred eeeeecccccCeeeEEEec-------------------------------------------------CceEEEccCCCe
Q 007229 573 RITIKNAHLGGVYGVAFMD-------------------------------------------------DFNVVSSGEDAC 603 (612)
Q Consensus 573 ~~~~~~~h~~~v~~~~~~~-------------------------------------------------~~~l~s~~~d~~ 603 (612)
.+..-++|.+.|..++|.+ .-.+-++|.|-.
T Consensus 366 VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTq 445 (636)
T KOG2394|consen 366 VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQ 445 (636)
T ss_pred EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccce
Confidence 8888999999999999850 013788999999
Q ss_pred EEEEEeccC
Q 007229 604 IRVWRLATE 612 (612)
Q Consensus 604 i~~w~~~~~ 612 (612)
+.+||+..+
T Consensus 446 lcLWDlteD 454 (636)
T KOG2394|consen 446 LCLWDLTED 454 (636)
T ss_pred EEEEecchh
Confidence 999999753
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=1.2e-15 Score=128.35 Aligned_cols=319 Identities=11% Similarity=0.056 Sum_probs=208.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC--CeEEEEeCCCC
Q 007229 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED--FLVNFYEGPPF 180 (612)
Q Consensus 103 ~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~ 180 (612)
..+..+.|..|...|..++.++ .+++..+.-............|.-+-|+.. ++|..+.+ +.+++.+.+.+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG----YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred cceeeeeeccceeEEEccCCCc----eeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccC
Confidence 4567777999998888888887 357776654444444445566777778776 56655554 45899998888
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe--CCCc
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS--ADKS 258 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~ 258 (612)
..+..+. ...+|.++.++. +.|+++-++ .|+|||+++.+.+.++.....+...+.++++++.+.+++.-+ ..|.
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 7776654 456799999874 456666654 499999999999999865445667788888888888888754 3588
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-e
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-K 337 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 337 (612)
|.+||. .+-+.+ ..+..|.+++.+++|+ +
T Consensus 155 V~l~d~----~nl~~v----------------------------------------------~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 155 VVLFDT----INLQPV----------------------------------------------NTINAHKGPLAALAFSPD 184 (391)
T ss_pred EEEEEc----ccceee----------------------------------------------eEEEecCCceeEEEECCC
Confidence 999998 444433 3445699999999999 6
Q ss_pred cCCcEEEEEecCCc-EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcce
Q 007229 338 ISQQTILSSSYDGA-IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLD 416 (612)
Q Consensus 338 ~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 416 (612)
|.++++++..|+ ||++.+.+++....+. .+.
T Consensus 185 --G~llATASeKGTVIRVf~v~~G~kl~eFR-------------------------------RG~--------------- 216 (391)
T KOG2110|consen 185 --GTLLATASEKGTVIRVFSVPEGQKLYEFR-------------------------------RGT--------------- 216 (391)
T ss_pred --CCEEEEeccCceEEEEEEcCCccEeeeee-------------------------------CCc---------------
Confidence 999999999997 5788777665544332 110
Q ss_pred eeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCc
Q 007229 417 LSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA 496 (612)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 496 (612)
....|.+++|+||+++|++.+..++|++|.++........ .+
T Consensus 217 --------------------------------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~------~p 258 (391)
T KOG2110|consen 217 --------------------------------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPE------SP 258 (391)
T ss_pred --------------------------------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCC------CC
Confidence 1135899999999999999999999999999754421111 00
Q ss_pred eEEE-EEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 497 ITVI-QYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 497 i~~~-~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
-..- .+.+-.+.+.+---.+.-.+||........+........+..+.-.+...++..++.||.++.|.++-
T Consensus 259 ~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 259 TAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred CCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 0000 00000000000000112223555444333222221112333333335778899999999999999875
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=1e-15 Score=126.10 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=167.2
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCC--ceEEEEECCCCCEEEE-eeC------cCeEEEeecCC
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY--PVTVARYSPNGEWIAS-ADV------SGSVRIWGTHN 90 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~las-~~~------d~~i~iwd~~~ 90 (612)
...+++|+.|..-++++.+...+||+.+.-+.......+.+ .+.-+-| -.++||. |+. ...|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 45669999999999999999999999875332221111222 2222223 2345554 332 24699999554
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCC--ceEEEEEEcCCCCEEEEEee
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHS--RRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~ 167 (612)
.++ ..+ .....+|.++.++++ +|++.-... |.||.+. .-+.++.+.... ....+++-+.....+..-|-
T Consensus 85 ~~~-i~e-l~f~~~I~~V~l~r~--riVvvl~~~----I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 85 ERC-IIE-LSFNSEIKAVKLRRD--RIVVVLENK----IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred CcE-EEE-EEeccceeeEEEcCC--eEEEEecCe----EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 442 222 345778999999876 577776664 5566665 556666665433 23333333333333233345
Q ss_pred cCCeEEEEeCCCCee--eecccccccceEEEEECCCCCeEEEEEcCCc-EEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 168 EDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDGSKLISVSSDRK-GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
.-|.|++-|+...+. ...+..|...|.|++.+-+|.++|+++..|+ |||||..+|+.+.++... .....|.+++|+
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A~iy~iaFS 235 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRADIYCIAFS 235 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-CchheEEEEEeC
Confidence 569999999877665 3568899999999999999999999999998 689999999999999643 456789999999
Q ss_pred cCCCEEEEEeCCCcEEEEEeec
Q 007229 245 PDGKKVLTVSADKSAKVWEILE 266 (612)
Q Consensus 245 ~~~~~l~~~~~dg~i~iw~~~~ 266 (612)
|+..+|++++..|+++++.+..
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999944
No 215
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=4.3e-17 Score=132.21 Aligned_cols=239 Identities=17% Similarity=0.224 Sum_probs=182.6
Q ss_pred CCCCceeEEEEccCCC----EEEEecCCEEEEEeCCCCce----eeEe-----ccCCCceEEEEECC-CCCEEEEeeCcC
Q 007229 16 TERGRGILISGNPKTD----TILYCNGRSVLIRYLDKPLH----VEFY-----GEHGYPVTVARYSP-NGEWIASADVSG 81 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~----~l~~~~~~~i~i~~~~~~~~----~~~~-----~~h~~~v~~~~~s~-d~~~las~~~d~ 81 (612)
.|.-.++.+.|.||.+ -|+..++..+++|.+...+. ...+ ..+..++++..|+. |-++|.++|-|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4566788999999884 34555678999998873221 1112 24678999999998 778999999999
Q ss_pred eEEEeecCCCce--eeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecC---CceeeeeccCCceEEEEEE
Q 007229 82 SVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDS---GTTVGDFDGHSRRVLSCEF 155 (612)
Q Consensus 82 ~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~---~~~~~~~~~~~~~v~~~~~ 155 (612)
+..|||++++.. ++..+-.|..+|..++|+.++ +.+|++|.|+. ++++++.. ...+..-+....+...++|
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS---vRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS---VRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc---EEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999743 678899999999999999976 46788898884 56766653 3444444444678899999
Q ss_pred cCCCCEEEEEeecC-CeEEEEeCCC-CeeeecccccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCe------ee
Q 007229 156 KPTRPFRIATCGED-FLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEK------IG 226 (612)
Q Consensus 156 ~~~~~~~l~~~~~d-~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~------~~ 226 (612)
++.+.+++|+-..| ..|.+-|++. ...+..+++|.+.|+.++|.|. ...|.+++.|..+.+||+...-. +.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 99988778887665 5788999875 4567789999999999999995 46899999999999999975432 11
Q ss_pred eeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEE
Q 007229 227 EFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVW 262 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw 262 (612)
.+ ...+.|..+.|++ .+.+++.+.. +.+.+.
T Consensus 331 ay----~a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 331 AY----TAGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred hh----hccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 22 4567899999996 5677877654 445443
No 216
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=8.1e-17 Score=150.61 Aligned_cols=264 Identities=18% Similarity=0.204 Sum_probs=186.5
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCce-----eeeeeeecCCCeEEEEECCC
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFV-----LKNEFKVLSGRIDDLQWSPD 113 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~s~~ 113 (612)
.+.||+++.+......-.-...|+|+.|+| +..+||.|..+|.|.+||+..+.. +......|..++..+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 699999998744444444678999999999 667888999999999999997764 22344568889999999775
Q ss_pred CCE--EEEEeCCCCeeeEEEEEecCCce---e-----eeec------cCCceEEEEEEcCCCCEEEEEeecCCeEEEEe-
Q 007229 114 GLR--IVACGDGKGKSFVRAFMWDSGTT---V-----GDFD------GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE- 176 (612)
Q Consensus 114 ~~~--l~~~~~~~~~~~i~i~~~~~~~~---~-----~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd- 176 (612)
-.- +++++.|+ .|..|++... . .... .....+++++|.+..++.++.|+++|.|.-=+
T Consensus 303 ~~~~~f~s~ssDG-----~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 303 EHNTEFFSLSSDG-----SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred CCCCceEEEecCC-----cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 544 88888887 3444442211 1 1111 22346899999999998999999999987733
Q ss_pred --CCCCe-----eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC-CCCeeeeeeccCCccccEEEEEEecCC-
Q 007229 177 --GPPFK-----FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDG- 247 (612)
Q Consensus 177 --~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~- 247 (612)
..... .+..+..|.++|+++.++|=+..++..+.|-+++||... ...++..+ ..+...+++++|||-.
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---DSSPDYVTDVAWSPTRP 454 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh---hhccceeeeeEEcCcCc
Confidence 22222 233456788999999999977666555559999999977 55566555 3566779999999954
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
..|+++..||.+.+||+... . ..+.....-+.
T Consensus 455 avF~~~d~~G~l~iWDLl~~----~--------------------------------------------~~Pv~s~~~~~ 486 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQD----D--------------------------------------------EEPVLSQKVCS 486 (555)
T ss_pred eEEEEEcCCCceehhhhhcc----c--------------------------------------------cCCcccccccc
Confidence 56778888999999999321 1 11111122222
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
...+.+.++ ..+..++.|...|.+.+|++...
T Consensus 487 ~~l~~~~~s-~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 487 PALTRVRWS-PNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccceeecC-CCCcEEEEecCCCcEEEEEcCch
Confidence 233333344 33889999999999999998643
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=8.7e-16 Score=126.54 Aligned_cols=221 Identities=14% Similarity=0.178 Sum_probs=150.6
Q ss_pred CcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 350 GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 350 g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
..+.+||-....+..... ...+|.++.+..+.+++.- +++|.+|........ ....+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~-l~~~e-------------------- 131 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKL-LHVIE-------------------- 131 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhh-eeeee--------------------
Confidence 468999955555555444 8899999999888877765 457888887644321 00011
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEE-EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcE
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV-GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSM 508 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (612)
+...+....+++-..+..+||. |..-|.|+|-|+...+.-....+.+|.+.|.|++++.+|.+
T Consensus 132 ----------------t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~ 195 (346)
T KOG2111|consen 132 ----------------TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTL 195 (346)
T ss_pred ----------------cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccE
Confidence 1111122333333334445554 44568999999987665345778999999999999999999
Q ss_pred EEEEcCCCe-EEEEecCCcceeeecccc-cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCc-ce------------
Q 007229 509 FASADGNRE-AIVWDRVSKEVKLNNMLF-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS-SR------------ 573 (612)
Q Consensus 509 l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~------------ 573 (612)
+|+++..|+ |||||..+++.+.+.-.| ....|.+++|||+..+||++|+.|+++|+.++.... +.
T Consensus 196 vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~l 275 (346)
T KOG2111|consen 196 VATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVL 275 (346)
T ss_pred EEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccccccc
Confidence 999999987 799999999988654443 345799999999999999999999999999876210 11
Q ss_pred ---------eeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 574 ---------ITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 574 ---------~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
+..+.-..+...-++|- +.+.++..+.||.-+-+.+
T Consensus 276 pky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 276 PKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred chhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 01111223344556666 4466777777876554433
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=8.4e-17 Score=155.87 Aligned_cols=341 Identities=13% Similarity=0.101 Sum_probs=222.5
Q ss_pred EeCCCCceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCce----eee--eeeecCCCeEEEEECCCCCE
Q 007229 44 RYLDKPLHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFV----LKN--EFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 44 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~----~~~--~~~~~~~~i~~~~~s~~~~~ 116 (612)
|+++ |..+..+..|+..|..++.+++. .+++|||.||+|++||...-.. ... ++......+.++.+.+.+..
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 5544 56777788999999999998865 9999999999999999874321 222 33334678999999999999
Q ss_pred EEEEeCCCCeeeEEEEEecC--Cc-----eeee--eccCCceEEEEEEcCCCCE-EEEEeecCCeEEEEeCCCCeeeecc
Q 007229 117 IVACGDGKGKSFVRAFMWDS--GT-----TVGD--FDGHSRRVLSCEFKPTRPF-RIATCGEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~--~~-----~~~~--~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~ 186 (612)
+|+++.|+ .+++...+. .+ ..+. .......|..-+|....+. +++.+..-+.|..||........++
T Consensus 1113 ~Av~t~DG---~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1113 FAVSTKDG---SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred EEEEcCCC---eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 99999988 455555553 11 1111 2222334444455554443 7888888899999999887766664
Q ss_pred c--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC---CCEEEEEe--CCCcE
Q 007229 187 R--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD---GKKVLTVS--ADKSA 259 (612)
Q Consensus 187 ~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~--~dg~i 259 (612)
+ ...+.|++++.+|.+++++.|+..|.+.+||++-+.++.... .++..++..+..+|- ....++++ ..+.|
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~--~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE--HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc--CcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 4 345789999999999999999999999999999998888773 356678888887763 24555554 46789
Q ss_pred EEEEeecCCCCCeeEeeeeccCc----------------cccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 260 KVWEILEDGSGGRVIKTFASSTS----------------NAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
.+|++ .++.....+-.... ........++...+..+++|+.+..|+.||...+.......
T Consensus 1268 s~wn~----~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~ 1343 (1431)
T KOG1240|consen 1268 STWNM----ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAV 1343 (1431)
T ss_pred eeeec----ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccc
Confidence 99999 77665555544311 11112223333347889999999999999977765543333
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEE-E-----EcCCc---ee-----eeeceecccceEEEEe---eccEEEEe
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIK-W-----IRGVG---YS-----SKLEKKYDARIKCLAA---VEEVIFTA 386 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~-w-----d~~~~---~~-----~~~~~~~~~~i~~~~~---~~~~l~~~ 386 (612)
.+..........+. +..++.++.--...+ . +.... +. ......|..+|+.++. +..+++++
T Consensus 1344 ~~~s~~~~~~~~s~--~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~ 1421 (1431)
T KOG1240|consen 1344 PGPSTSYSTNSESY--DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSS 1421 (1431)
T ss_pred cCccccccccchhc--cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEe
Confidence 33322222222221 222222221100000 0 00000 00 0011127788888888 44589999
Q ss_pred cCCCeEEEEe
Q 007229 387 GFDNKVWRVP 396 (612)
Q Consensus 387 ~~~~~i~~~~ 396 (612)
+.||.|++|.
T Consensus 1422 s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1422 SRDGVIKIWK 1431 (1431)
T ss_pred cCCCeeeecC
Confidence 9999999993
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.5e-18 Score=150.80 Aligned_cols=209 Identities=19% Similarity=0.270 Sum_probs=160.6
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeee
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSF 128 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~ 128 (612)
+.+.|.||++.|+|++|+.||.+||+||+|-.+.|||....+.+...-.+|...|.++.|-| +.+.++++..|. .
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk---~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK---L 118 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc---e
Confidence 34568899999999999999999999999999999999988877777789999999999999 456677777776 6
Q ss_pred EEEEEecC----------CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-------e---cccc
Q 007229 129 VRAFMWDS----------GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-------L---SHRE 188 (612)
Q Consensus 129 i~i~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-------~---~~~~ 188 (612)
|++++.+. .+..+.+..|...|..++-.|+++..+.++++||+|+-+|++....- . .+..
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 78888873 23556678899999999999999889999999999999998763211 1 1111
Q ss_pred cccceEEEEECCCC-CeEEEEEcCCcEEEEecCC--------CC----------eeeeeeccCCcc-----------ccE
Q 007229 189 HSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKS--------GE----------KIGEFSSEDGHH-----------GSI 238 (612)
Q Consensus 189 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~--------~~----------~~~~~~~~~~~~-----------~~v 238 (612)
.--...|+.++|.. .+|++|+.|...++||.+. +. ++.-+.. +|- ..+
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p--~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP--GHLKNSQGNLDRYITCC 276 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC--ccccCcccccccceeee
Confidence 22356889999954 5889999999999999421 11 1111110 111 125
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 239 YAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+-++|+|+|.-|++.-....|.++|+
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEee
Confidence 67789999987777666668999999
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=8.3e-17 Score=152.06 Aligned_cols=217 Identities=13% Similarity=0.196 Sum_probs=153.1
Q ss_pred CCceeEEEEccCCCEEEEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcC--eEEEeecCC
Q 007229 18 RGRGILISGNPKTDTILYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSG--SVRIWGTHN 90 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~--~i~iwd~~~ 90 (612)
.+.+.+.+|||||+.|++.+ +..|++|++.+++... +....+.+..++|||||+.|+.. +.+| .|.+||+.+
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 44688999999999999864 3589999999886544 33344445678999999988865 4444 588999988
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
++ +. .+..+...+....|+|||+.|+..++..+. .++|.++ .+.....+..+........|+|+|+++++++..+
T Consensus 277 g~-~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~--~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 277 GQ-IR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGR--PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred CC-EE-EccCCCCCcCceEECCCCCEEEEEeCCCCC--ceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 76 33 344455677899999999999988875432 4577666 2233445544555567789999999754544443
Q ss_pred --CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCc---EEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 170 --FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK---GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 170 --~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
..|.+||+.+++... +... .......|+|||++|+.++.++. +.++++ +|.....+. .+.+.+...+|+
T Consensus 353 g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~---~~~~~~~~p~Ws 426 (429)
T PRK03629 353 GQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP---ATDGQVKFPAWS 426 (429)
T ss_pred CCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc---cCCCCcCCcccC
Confidence 358889998876443 3221 22346789999999999888765 667776 455555552 567778888888
Q ss_pred c
Q 007229 245 P 245 (612)
Q Consensus 245 ~ 245 (612)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 6
No 221
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.8e-15 Score=133.75 Aligned_cols=531 Identities=11% Similarity=0.094 Sum_probs=313.6
Q ss_pred ceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc---------------eeeEeccCCCceEEE
Q 007229 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL---------------HVEFYGEHGYPVTVA 65 (612)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~---------------~~~~~~~h~~~v~~~ 65 (612)
|.+.+++-++-+. .....|++|+....+||+|+ +|.+.|..+.+.. .-+++.||.+.|.-+
T Consensus 1 Mfvylskki~iPn---nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vv 77 (1189)
T KOG2041|consen 1 MFVYLSKKIGIPN---NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVV 77 (1189)
T ss_pred CceEeecccCCCC---CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEE
Confidence 3444444443333 45788999999999999998 8988888765321 234588999999999
Q ss_pred EECCCCCEEEEeeCcCeEEEeecCCCceeeeee-eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeec
Q 007229 66 RYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF-KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD 144 (612)
Q Consensus 66 ~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~ 144 (612)
.|+.+.+.|-|+..+|.|.||-+-.+.-..... ...+.-|.+++|..||+.+..+-.|+.. .+-..+ |..+..-.
T Consensus 78 TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav---IVGsvd-GNRIwgKe 153 (1189)
T KOG2041|consen 78 TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV---IVGSVD-GNRIWGKE 153 (1189)
T ss_pred EeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE---EEEeec-cceecchh
Confidence 999999999999999999999998776422222 2345678999999999999988888742 222222 22222211
Q ss_pred cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-------ec----ccccccceEEEEEC--------CCCCeE
Q 007229 145 GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-------LS----HREHSNFVNCIRFS--------PDGSKL 205 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-------~~----~~~~~~~v~~~~~s--------~~~~~l 205 (612)
-.......+.|++|.+ +++.+-..|.+.++|.+..-.. .. +......|..+.|. ||...|
T Consensus 154 Lkg~~l~hv~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 154 LKGQLLAHVLWSEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred cchheccceeecccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE
Confidence 1122334788999998 5777888899999985432110 00 11112234555553 477789
Q ss_pred EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC---------CcEEEEEeecCCCCCeeEee
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD---------KSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~ 276 (612)
+.+-..|.+.+-.-++......+ ...-.+....|+++|..|++++.+ +.|.+|.. -|..+.+
T Consensus 233 avcy~nGr~QiMR~eND~~Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-----~G~i~gt 303 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDPEPVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-----YGHIVGT 303 (1189)
T ss_pred EEEEcCceehhhhhcCCCCCeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-----chhheEE
Confidence 99999999998876665555555 344678899999999999998864 35666663 5666666
Q ss_pred eeccCccccceeeeeeeccC-CEEEEEEcCCEEEEEEcCCCCC-------CceeecCcccceeEEEEEec--C-------
Q 007229 277 FASSTSNAVEDMLVGCLWQN-DHLITVSLGGIISIFSASNLDK-------APLSFSGHVKNVSTLTALKI--S------- 339 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~--~------- 339 (612)
++.+. ..+.++.|.+ +.-++...++.|.+-+++...+ .+...+....+-.++.|-+. +
T Consensus 304 lkvpg-----~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V 378 (1189)
T KOG2041|consen 304 LKVPG-----SCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTV 378 (1189)
T ss_pred EecCC-----ceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhh
Confidence 66553 4566666663 3334444455555544433211 11111222222222222210 0
Q ss_pred -----------CcEEEEEecCCcEEEEEcC-Cceeeeece-------ecccceEEEE-----eeccEEEEecCCCeEEEE
Q 007229 340 -----------QQTILSSSYDGAIIKWIRG-VGYSSKLEK-------KYDARIKCLA-----AVEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 340 -----------~~~l~~~~~dg~i~~wd~~-~~~~~~~~~-------~~~~~i~~~~-----~~~~~l~~~~~~~~i~~~ 395 (612)
.-.++.-..+|.+.-++.- +........ ..+.....+. .++-.++.++.+ .+.+|
T Consensus 379 ~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iW 457 (1189)
T KOG2041|consen 379 THFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIW 457 (1189)
T ss_pred cceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEE
Confidence 2233333344444433211 111000000 0111222222 244555555554 55666
Q ss_pred ecCCCCCCcccee-ccCCC-cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCe
Q 007229 396 PLCEGECGDAEHI-DVGSQ-PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGK 473 (612)
Q Consensus 396 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 473 (612)
.....+....... ....+ .....-.|.+. .++..-+. .........+|.+++.+ .++|.++-..|.
T Consensus 458 hy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga-------~d~~l~ys---~kt~~G~~DpICAl~~s--dk~l~vareSG~ 525 (1189)
T KOG2041|consen 458 HYVLPKFNSVLAGVKIRKEGRFHGDDTPEGA-------QDRTLEYS---TKTLLGSKDPICALCIS--DKFLMVARESGG 525 (1189)
T ss_pred EEeccchhhhhhhhhhcccccccCCCCccch-------hhceeecc---ceeeccCCCcceeeeec--ceEEEEEeccCc
Confidence 6544332110000 00000 00111112110 01111110 11112245677777776 578999999999
Q ss_pred EEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC---CcceeeecccccccceeEEEecCCCc
Q 007229 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV---SKEVKLNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~i~~~~~s~~~~ 550 (612)
|+-|.+.+..+..... -+..|.+++++-+...+|.-..-|.+.+.|+. ++..+..........|..+.|..|..
T Consensus 526 I~rySl~nv~l~n~y~---~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp 602 (1189)
T KOG2041|consen 526 IYRYSLNNVVLTNSYP---VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNP 602 (1189)
T ss_pred eEEEEecceeeeeccc---cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCc
Confidence 9999998876632222 34579999999999999999888999998886 34443334444567899999999888
Q ss_pred EEEEeecCcEEEEEEccCCC
Q 007229 551 MVATGSIDTCVIIYEIGKPA 570 (612)
Q Consensus 551 ~l~s~~~d~~i~iwd~~~~~ 570 (612)
.|..--+...++|++-..+.
T Consensus 603 ~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 603 NLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred hHHhhhhhceEEEecCcCcc
Confidence 77666666678888765533
No 222
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.78 E-value=2.9e-12 Score=130.36 Aligned_cols=451 Identities=13% Similarity=0.148 Sum_probs=265.8
Q ss_pred CceeEEEEccCCCEEEEecC-----CEEEEEeCCCCc---eeeEec-----cCCCceEEEEECCCCCEEEEeeCcCeEEE
Q 007229 19 GRGILISGNPKTDTILYCNG-----RSVLIRYLDKPL---HVEFYG-----EHGYPVTVARYSPNGEWIASADVSGSVRI 85 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~-----~~i~i~~~~~~~---~~~~~~-----~h~~~v~~~~~s~d~~~las~~~d~~i~i 85 (612)
..+...+|.++...+.+..+ ..|.+....... .+..+. .....|.++.|-++...|+.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 36778888887776655542 234444333222 222222 24578999999999999999999999999
Q ss_pred e----ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-----------C----------Ccee
Q 007229 86 W----GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-----------S----------GTTV 140 (612)
Q Consensus 86 w----d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-----------~----------~~~~ 140 (612)
. +..+.. ......-..+|.+++||||+..|+.++.++.... .-.+|+ - |++-
T Consensus 102 ~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~-mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDEDE--IEIVGSVDSGILAASWSPDEELLALVTGEGNLLL-MTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEE-EeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 555553 3345566789999999999999999887763211 111122 0 1111
Q ss_pred eeecc------------------------CCceEEEEEEcCCCCEEEEEeec------CCeEEEEeCCCCeeeecccccc
Q 007229 141 GDFDG------------------------HSRRVLSCEFKPTRPFRIATCGE------DFLVNFYEGPPFKFKLSHREHS 190 (612)
Q Consensus 141 ~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~ 190 (612)
..|.| +.+.-..++|-.||.| +|+.+. -..+|+|+-+ |.+..+-..-.
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y-FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~ 256 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY-FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD 256 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE-EEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence 11211 2234467889999997 555543 3689999965 66555444333
Q ss_pred cceEEEEECCCCCeEEEEEc---CCcEEEEecCCCCeeeeeeccC-CccccEEEEEEecCCCEEEEEeCCCcEEEEEeec
Q 007229 191 NFVNCIRFSPDGSKLISVSS---DRKGLIYDGKSGEKIGEFSSED-GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILE 266 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~ 266 (612)
+--.+++|-|.|+++|+... ...|.+|. ++|-....|.... .....|..+.|++|+..|+....|. |++|..
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~-- 332 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR-- 332 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe--
Confidence 33457899999999988765 35677787 6777777765432 4567899999999999999987664 999998
Q ss_pred CCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEE
Q 007229 267 DGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346 (612)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 346 (612)
.+..--...... + .....+..+.|++.+...|...
T Consensus 333 --~NYHWYLKqei~------------------------------------------~-~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 333 --SNYHWYLKQEIR------------------------------------------F-SSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred --eCCEEEEEEEEE------------------------------------------c-cCCCCCCceEECCCCCCEEEEE
Confidence 444321111100 0 0112223366665446667777
Q ss_pred ecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcE
Q 007229 347 SYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPEL 426 (612)
Q Consensus 347 ~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (612)
+.+|.+..++..-.............-.....+|+ ++.+-++......
T Consensus 368 t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~---------~lllTpf~~a~VP----------------------- 415 (928)
T PF04762_consen 368 TSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGN---------KLLLTPFRRAVVP----------------------- 415 (928)
T ss_pred ecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCC---------eEEEecccccCCC-----------------------
Confidence 66676665543211111000000000001111221 2222222221111
Q ss_pred EEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccc------cceee----------
Q 007229 427 ALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT------EEMVL---------- 490 (612)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~------~~~~~---------- 490 (612)
+.-....+..+.+|.+++|++++..+++-..||.+.+|........ ....+
T Consensus 416 -------------PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (928)
T PF04762_consen 416 -------------PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDS 482 (928)
T ss_pred -------------chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccc
Confidence 1112234456678999999999988999999999999986443211 00111
Q ss_pred ccccCceEEEEEcCCCcEEEEEcCC---CeEEEEecCCcce--eeecccccccceeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 491 EKHRGAITVIQYSPDVSMFASADGN---REAIVWDRVSKEV--KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
......+..++|..+...++....+ ..+.++++...+. .......-.+.+..+...++...++.-..||.+...+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~ 562 (928)
T PF04762_consen 483 ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLS 562 (928)
T ss_pred ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEee
Confidence 1123457888888887777766654 6788888743321 1122222345555666666655466667788888665
Q ss_pred ccC
Q 007229 566 IGK 568 (612)
Q Consensus 566 ~~~ 568 (612)
...
T Consensus 563 ~~~ 565 (928)
T PF04762_consen 563 SDG 565 (928)
T ss_pred cCC
Confidence 544
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=1.3e-16 Score=131.45 Aligned_cols=201 Identities=15% Similarity=0.216 Sum_probs=164.7
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
--..+|+|.+|++|+..+|.+-....|.||....... ...++..|...|+.+.|+|....|++++.+++. .+|..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna---yVw~~ 84 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA---YVWTQ 84 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc---ccccc
Confidence 3457999999999999999999999999999987762 667888999999999999999999999999853 44444
Q ss_pred -c--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee----ecccccccceEEEEECCCCCeEEE
Q 007229 135 -D--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK----LSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 135 -~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
+ +-++...+..+....+++.|+|.++ .+++|+....|.+|-.+..+-= +.-+.+...|.+++|+|++-+|++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 2 3456667788999999999999998 6999999999999976654321 123456778999999999999999
Q ss_pred EEcCCcEEEEecC-----C-------------CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 208 VSSDRKGLIYDGK-----S-------------GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 208 ~~~dg~i~vwd~~-----~-------------~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+.|+..+|+..- + |+.+.++ ....+.+..+.|+|+|..|+-.+.|..+.+-|.
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~---~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA---SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh---ccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 9999999999742 1 1122222 145678999999999999999999999999887
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.3e-16 Score=128.57 Aligned_cols=241 Identities=13% Similarity=0.114 Sum_probs=168.9
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec-cCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~ 93 (612)
....+..++|++.-.-+|++. |..|++||-.. +....++ .....|+|++|-|. ++-||.|+.. -|.+|.......
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 345677899999666666666 78999999877 4444444 34678999999995 4678888765 599998764321
Q ss_pred eee-------------eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC
Q 007229 94 LKN-------------EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 94 ~~~-------------~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (612)
... ...+| ..|++|+|.+||..|++++-+.. .|.||+.+++..+.......+.+.-+.||||+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss--si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS--SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc--eEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 111 11222 57999999999999999988775 478888888887776666778899999999999
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee--------------
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG-------------- 226 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-------------- 226 (612)
+ +..+.-|+..++|+...........-..+.|....|+|+|++|+.++. |.-++|.+.-.+.-.
T Consensus 252 ~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 252 V-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred E-EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence 5 888899999999965443322222233458999999999998776554 445555543211110
Q ss_pred -eee------ccCCccccEEEEEEecCCCEEEEEeCCC--------cEEEEEe
Q 007229 227 -EFS------SEDGHHGSIYAVSWSPDGKKVLTVSADK--------SAKVWEI 264 (612)
Q Consensus 227 -~~~------~~~~~~~~v~~i~~~~~~~~l~~~~~dg--------~i~iw~~ 264 (612)
.+. ...-..+++.+++|.|.|.+|++.-..+ .|.+||.
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdt 382 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDT 382 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcc
Confidence 110 0112356788999999999999876543 3566776
No 225
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.77 E-value=6e-14 Score=134.47 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=126.6
Q ss_pred eEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee
Q 007229 22 ILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~ 100 (612)
.-+.++++.-+++++. -+.|++|+...-.....+.||++.|..+.++.||+++|+.|+|.++++|++++.+.+.....+
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence 3455677777888887 699999998743333358999999999999999999999999999999999999877667889
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC-ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC
Q 007229 101 LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS-RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 101 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
|...+..++|.|+ ++++++.+- ..++|.++ ++.+..+.+|. +.+..++..++.. .++|++.|+.+++|++..
T Consensus 217 HsaRvw~~~~~~n--~i~t~gedc---tcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 217 HSARVWACCFLPN--RIITVGEDC---TCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceeEEEEeccc--eeEEeccce---EEEEEecc-cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 9999999999999 999999997 45666554 44445777776 5788999988887 699999999999999654
No 226
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.77 E-value=3.7e-13 Score=117.50 Aligned_cols=413 Identities=12% Similarity=0.135 Sum_probs=236.3
Q ss_pred CCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-------eCcCeEEEeecCCCceeeeeeeecC
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-------DVSGSVRIWGTHNGFVLKNEFKVLS 102 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-------~~d~~i~iwd~~~~~~~~~~~~~~~ 102 (612)
|..|++.+...+-.+++.+++.++ +..|-+-|+...|+|||+.+|.. ...+.+.+.+.++++....+.. .
T Consensus 50 GD~IiFt~~DdlWe~slk~g~~~r-itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyf--G 126 (668)
T COG4946 50 GDRIIFTCCDDLWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYF--G 126 (668)
T ss_pred CcEEEEEechHHHHhhhccCCeeE-EecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEe--c
Confidence 666776666666666788888777 66789999999999999998872 2445688888899984333333 3
Q ss_pred CCeE-EEEECCCCCEEEEEeCCCCee-eEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE-------
Q 007229 103 GRID-DLQWSPDGLRIVACGDGKGKS-FVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV------- 172 (612)
Q Consensus 103 ~~i~-~~~~s~~~~~l~~~~~~~~~~-~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i------- 172 (612)
...+ -.-|.|||+.+++........ .-.++..+ .|.....+ .-++.+.+.+-. | +++.|-.--.+
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv~~d-g--~ivigRntydLP~WK~Yk 201 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIVIKD-G--IIVIGRNTYDLPHWKGYK 201 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEEEeC-C--EEEEccCcccCccccccc
Confidence 3333 456999999998876554221 11222222 22212222 223444444432 2 24443211111
Q ss_pred -----EEEeCC----CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC-CCCeeeeeeccCCccccEEEEE
Q 007229 173 -----NFYEGP----PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 173 -----~~wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
++|--. +.+....+.+| |.+-..-.+.-+++ ...+|.=.+|... .|+-+.... .-..-.+-.
T Consensus 202 GGtrGklWis~d~g~tFeK~vdl~~~---vS~PmIV~~RvYFl-sD~eG~GnlYSvdldGkDlrrHT----nFtdYY~R~ 273 (668)
T COG4946 202 GGTRGKLWISSDGGKTFEKFVDLDGN---VSSPMIVGERVYFL-SDHEGVGNLYSVDLDGKDLRRHT----NFTDYYPRN 273 (668)
T ss_pred CCccceEEEEecCCcceeeeeecCCC---cCCceEEcceEEEE-ecccCccceEEeccCCchhhhcC----Cchhccccc
Confidence 233211 22222233333 33322222221222 2334444444332 233332221 111122223
Q ss_pred EecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc--Cccccceeee--------eeeccCCEEEEEEcCCEEEEEE
Q 007229 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS--TSNAVEDMLV--------GCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
.+.||+.++.. ..|.|.+||. ++ +.+..+... .......... ..+..++..++.-+.|...+.+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP----~t-d~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~ 347 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDP----ET-DSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR 347 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCC----Cc-CcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence 46688887764 5688999997 33 223333222 1101111110 0112244444445556666655
Q ss_pred cCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCC-cEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecC
Q 007229 313 ASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDG-AIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGF 388 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~ 388 (612)
..... ...-+|...|.-..+. + ++-++.|..|| .+-++|.++++...... .-+.|.++.. +++.++.+..
T Consensus 348 ~~~~~---~iqv~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 348 PWDGY---SIQVGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred CCCCe---eEEcCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC
Confidence 33221 2223466667666666 4 55888899998 89999999998777665 5667777777 6778888888
Q ss_pred CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEE
Q 007229 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVG 468 (612)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 468 (612)
...+++.|+.++... +.......-|+.++|+|+++++|.+
T Consensus 422 r~el~vididngnv~----------------------------------------~idkS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 422 RFELWVIDIDNGNVR----------------------------------------LIDKSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred ceEEEEEEecCCCee----------------------------------------EecccccceeEEEEEcCCceeEEEe
Confidence 889999999887643 1111123458999999999999998
Q ss_pred ecCC----eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc
Q 007229 469 GQNG----KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD 513 (612)
Q Consensus 469 ~~dg----~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (612)
.-+| .|++||+.+++.....+..+ -=.+-+|.||+++|..-+
T Consensus 462 fP~gy~tq~Iklydm~~~Kiy~vTT~ta---~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGGKIYDVTTPTA---YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcceeeeeEEEEecCCCeEEEecCCcc---cccCcccCCCCcEEEEEe
Confidence 7776 69999999988633333333 334568899999886554
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.4e-15 Score=145.02 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=151.2
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC---cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV---SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
.|.++|.+... .+.+..|...+.+.+|||||+.||..+. +..|.+||+.+++. ..+..+.+.+...+|+|||+.
T Consensus 183 ~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCE
Confidence 88899986554 4557788899999999999999998763 46899999998863 345566778889999999999
Q ss_pred EEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeecccccccce
Q 007229 117 IVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHSNFV 193 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~v 193 (612)
|+......+. ..||.++ .+.....+..+........|+|||+.++++...+| .|.++|+..++... +..+...+
T Consensus 260 la~~~~~~g~--~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~ 336 (435)
T PRK05137 260 VVMSLSQGGN--TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRY 336 (435)
T ss_pred EEEEEecCCC--ceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcc
Confidence 8765443322 3566666 23345667767777788999999996444443443 68888887665433 33334556
Q ss_pred EEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC------cEEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK------SAKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg------~i~iw~~ 264 (612)
....|+|||++|+....+ ..|.+||+..+.. ..+ .....+....|+|||+.|+..+.++ .+.++++
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~l----t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RIL----TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eec----cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 778999999999887654 3588889765543 333 1223467889999999988765532 4555665
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2.6e-16 Score=148.97 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=147.1
Q ss_pred CCCceeEEEEccCCCEEEEecC----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeec--C
Q 007229 17 ERGRGILISGNPKTDTILYCNG----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGT--H 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~--~ 89 (612)
+.+.+.+.+|||||+.|++.+. ..|++||+.+++... +....+.+.+.+|||||+.|+ +.+.+|...||.+ .
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 4567889999999999999862 479999999887654 444556677999999999887 4677887777665 4
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
++. ...+..+........|+|||++|+..++..+. ..+|..+ .+.....+..+.......+|+|+|++ ++..+.
T Consensus 273 ~~~--~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~--~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~-Ia~~s~ 347 (427)
T PRK02889 273 GSG--LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA--PQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKL-LAYISR 347 (427)
T ss_pred CCC--cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC--cEEEEEECCCCceEEEecCCCCcCceEECCCCCE-EEEEEc
Confidence 443 23455555566778999999999988765432 4566665 22223333223334456789999996 544443
Q ss_pred C-C--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 169 D-F--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 169 d-~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
+ + .|.+||+.+++......+ .......|+|||++|+.++.++ .+.+.++ ++.....+. .+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~---~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS---VQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee---cCCCCCCCCc
Confidence 3 3 699999988775543222 2346789999999998877654 2555565 455555452 3455666777
Q ss_pred Eec
Q 007229 243 WSP 245 (612)
Q Consensus 243 ~~~ 245 (612)
|+|
T Consensus 422 wsp 424 (427)
T PRK02889 422 WGP 424 (427)
T ss_pred cCC
Confidence 776
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=4.4e-16 Score=137.39 Aligned_cols=218 Identities=15% Similarity=0.245 Sum_probs=159.0
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeE----eccCCCceEEEEE-----CCCCCEEEEeeCcCeEEEeecCC
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEF----YGEHGYPVTVARY-----SPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~----~~~h~~~v~~~~~-----s~d~~~las~~~d~~i~iwd~~~ 90 (612)
.+....++-.|++|.+.-+..+++|+...+..... ..--...-+|=+| .|++--|..|-.-|.|.+.|...
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 45567778889999999999999999885433221 1111122334444 45666788888888999998876
Q ss_pred Ccee---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec------------------------------CC
Q 007229 91 GFVL---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD------------------------------SG 137 (612)
Q Consensus 91 ~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~------------------------------~~ 137 (612)
.+.. .......+..++++.|-|.+..++.+....+. ++.++ +.
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGn----lyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r 280 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGN----LYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR 280 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCc----eEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence 4321 11122344689999999966544444332221 33221 01
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
.++..+..-.+.|...+|+|||++ ||+.+.||.+||+|..+.+++..++..-+...|++|||||+|+++|++|-.|.||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 122233334457888999999995 9999999999999999999888888888899999999999999999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
.+..++.+..- .+|...|..++|.|
T Consensus 360 Sf~erRVVARG---qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARG---QGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEec---cccccceeeEeecc
Confidence 99999988877 49999999999987
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.8e-16 Score=148.15 Aligned_cols=217 Identities=17% Similarity=0.189 Sum_probs=150.5
Q ss_pred CCCceeEEEEccCCCEEEEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCe--EEEeecC
Q 007229 17 ERGRGILISGNPKTDTILYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGS--VRIWGTH 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~--i~iwd~~ 89 (612)
+.+.+.+.+|||||+.|++.+ +..|++||+.+++... +..+.+.+.+.+|||||+.|+ +.+.++. |.+||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 456789999999999999986 3589999999887644 666777888999999999876 4455554 7777888
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
+++ + ..+..+........|+|||++|+..++..+. ..+|.++ .+.....+..+...+....|+|+|++++++...
T Consensus 279 ~~~-~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~--~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 279 SGT-T-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGS--PQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred CCc-e-EEccCCCCccCceeEcCCCCEEEEEECCCCC--CeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 875 3 3455566667789999999999988865432 2455555 333344555455567778999999964444432
Q ss_pred C--CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC------CcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 169 D--FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD------RKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 169 d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
. ..|.+||+..+... .+. ....+....|+|||+.|+..+.+ ..+.++|+..+.. ..+ .....+..
T Consensus 355 ~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l----~~~~~~~~ 427 (435)
T PRK05137 355 GGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REV----PTPGDASD 427 (435)
T ss_pred CCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEc----cCCCCccC
Confidence 2 36888887655432 232 22346788999999998776543 2577888765544 444 22334556
Q ss_pred EEEec
Q 007229 241 VSWSP 245 (612)
Q Consensus 241 i~~~~ 245 (612)
.+|+|
T Consensus 428 p~Wsp 432 (435)
T PRK05137 428 PAWSP 432 (435)
T ss_pred cccCC
Confidence 67765
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.7e-15 Score=144.12 Aligned_cols=216 Identities=15% Similarity=0.115 Sum_probs=146.1
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC---cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV---SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.+||..... .+.+..|...+.+.+|+|||+.||..+. +..|.+||+.+++. ..+....+.....+|+|||+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 378999987544 4446678889999999999999998763 34699999988763 23444455566889999999
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe--EEEEeCCCCeeeecccccccce
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL--VNFYEGPPFKFKLSHREHSNFV 193 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~~~v 193 (612)
.|+......+...+.+++.++++ ...+..+.......+|+|||++++++...+|. |.++|+.+++... +..+....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~ 338 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYN 338 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCc
Confidence 88765432222123344444544 45566666666788999999965555545554 6666776665432 22223344
Q ss_pred EEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC---CcEEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD---KSAKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~iw~~ 264 (612)
...+|+|||++++..+.++ .|.+||+.+++.. .+ .+........|+|||++++..+.+ +.|.++++
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L----t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL----TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-EC----CCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 5789999999998776543 5999999887755 33 222234567899999988877653 34556665
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.7e-15 Score=143.13 Aligned_cols=216 Identities=15% Similarity=0.077 Sum_probs=145.6
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee---CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD---VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.++|.+...... +..+...+.+.+|||||+.||..+ .+..|.+||+.+++. ..+....+.+...+|+|||+
T Consensus 179 ~~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 379999998665544 556778899999999999998754 345799999988763 23333444566789999999
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE--eCCCCeeeecccccccce
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHREHSNFV 193 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w--d~~~~~~~~~~~~~~~~v 193 (612)
.|+......+...+.+++.++++. ..+..+...+....|+|||+.++++...++...+| |+.+++.. .+..+....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~ 333 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQN 333 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 999775433221233444445544 44555556778899999999644454444544444 66666443 333334446
Q ss_pred EEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc---EEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS---AKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~---i~iw~~ 264 (612)
....|+|||++|+..+.+ ..|.+||+.+++.. .+. .........|+|||++|+..+.++. +.++++
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt----~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT----DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC----CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 678999999999877654 35889999887644 331 1122346789999999999988765 455554
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=7e-16 Score=146.75 Aligned_cols=217 Identities=13% Similarity=0.194 Sum_probs=149.6
Q ss_pred CCCceeEEEEccCCCEEEEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcC--eEEEeecC
Q 007229 17 ERGRGILISGNPKTDTILYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSG--SVRIWGTH 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~--~i~iwd~~ 89 (612)
+.+.+.+.+|||||+.|++.+ ...|++||+.+++... +..+.+...+++|||||+.|+ +.+.+| .|.+||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 345688999999999999986 2479999999887654 444555666899999999876 445555 59999999
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
+++ + ..+..+.......+|+|||++|+..++..+. ..+|.++ +++ ...+..+.......+|+|+|++++++..
T Consensus 281 ~g~-~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~--~~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 281 SRQ-L-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR--PQIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred CCC-e-EECccCCCCccceEECCCCCEEEEEECCCCC--ceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEC
Confidence 886 3 3455565566788999999999988765432 3466655 443 3333334444557899999996444443
Q ss_pred cCC--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 168 EDF--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 168 ~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.+.++++. +.....+. .+.+.+...+
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~---~~~g~~~~p~ 429 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV---SADGEVREPA 429 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc---cCCCCCCCCc
Confidence 333 6999999887755 332 22234567999999988877653 457788874 44444442 3445566677
Q ss_pred Eec
Q 007229 243 WSP 245 (612)
Q Consensus 243 ~~~ 245 (612)
|+|
T Consensus 430 wsp 432 (433)
T PRK04922 430 WSP 432 (433)
T ss_pred cCC
Confidence 765
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1.3e-17 Score=144.10 Aligned_cols=231 Identities=16% Similarity=0.242 Sum_probs=198.1
Q ss_pred CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CC
Q 007229 59 GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SG 137 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~ 137 (612)
...-..+.++.+|+.|+.|+.-|.|..+|..+.+ +...+. -...|..+.|..+.+++|++-... ++.+| .|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y------~yvYD~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-LHFEIN-VMETVRDVTFLHNEQFFAVAQKKY------VYVYDNNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccce-eeeeee-hhhhhhhhhhhcchHHHHhhhhce------EEEecCCC
Confidence 4455789999999999999999999999999987 544443 345789999999999999887664 77777 78
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
..++.++.| ..|..+.|-|..- +|++++..|.++--|+.+|+.+..+....+.+..|+-+|-+..+-+|...|+|.+|
T Consensus 201 tElHClk~~-~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred cEEeehhhc-Cchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 889888866 4689999999874 89999999999999999999999998888999999999988889999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
.....+++..+ -.|.++|.++++.++|+|++|.+.|..++|||+ .....+.++..+. ....+.++..
T Consensus 279 SP~skePLvKi---LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl----R~~~ql~t~~tp~------~a~~ls~Sqk 345 (545)
T KOG1272|consen 279 SPNSKEPLVKI---LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL----RNFYQLHTYRTPH------PASNLSLSQK 345 (545)
T ss_pred CCCCcchHHHH---HhcCCCcceEEECCCCcEEeecccccceeEeee----ccccccceeecCC------Cccccccccc
Confidence 99999988877 389999999999999999999999999999999 6666666555432 3445666788
Q ss_pred EEEEEEcCCEEEEEE
Q 007229 298 HLITVSLGGIISIFS 312 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~ 312 (612)
.+++.+....+.+|.
T Consensus 346 glLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 346 GLLALSYGDHVQIWK 360 (545)
T ss_pred cceeeecCCeeeeeh
Confidence 888999999999996
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.5e-15 Score=143.89 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=144.1
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.++|.+. ...+.+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++. ..+....+.+...+|+|||+
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 4788888754 4444466788899999999999999987643 4599999998863 23444556677899999999
Q ss_pred EEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe--CCCCeeeecccccccc
Q 007229 116 RIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE--GPPFKFKLSHREHSNF 192 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd--~~~~~~~~~~~~~~~~ 192 (612)
.|+......+ ...+|.++ .+.....+..+........|+|||+.++++...++...+|. +.+++... +..+...
T Consensus 253 ~la~~~~~~g--~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~ 329 (427)
T PRK02889 253 TLAVALSRDG--NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSY 329 (427)
T ss_pred EEEEEEccCC--CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCC
Confidence 9986544332 24677776 34445666666666778899999997555554556666665 44443322 2112233
Q ss_pred eEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 193 VNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
....+|+|||++|+..+.++ .|.+||+.+++..... .........|+|||+.|+..+.++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-----~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-----DTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-----CCCCccCceECCCCCEEEEEEecC
Confidence 44678999999998877654 5999999888754332 112346789999999988877654
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.1e-14 Score=126.93 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=150.0
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-----eC-----cCeEEEeecCC
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-----DV-----SGSVRIWGTHN 90 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-----~~-----d~~i~iwd~~~ 90 (612)
+...++|++|+++|++.+..+.|++..+...+.+...- .+.++.|||-|.+|.+= .. ...+.+|++++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 57899999999999999999999999988644433322 88999999999999872 11 23578999999
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC-CCEEEEE----
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT-RPFRIAT---- 165 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~---- 165 (612)
+. ....+......-.+..|++|..+.+-...+. +.++..+..+. ..-+-|...|+.+.++|. ..+.+|+
T Consensus 115 ~~-~~s~~q~k~Q~~W~~qfs~dEsl~arlv~ne----v~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 115 GV-QRSQIQKKMQNGWVPQFSIDESLAARLVSNE----VQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ce-ehhheehhhhcCcccccccchhhhhhhhcce----EEEEecCCccc-eeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 54 3333333222226899999987655444443 34444443111 112336788999999998 3334554
Q ss_pred -eecCCeEEEEeCCCCeeeeccc---ccccceEEEEECCCCCeE-EEEEc--C---------CcEEEEecCCCCeeeeee
Q 007229 166 -CGEDFLVNFYEGPPFKFKLSHR---EHSNFVNCIRFSPDGSKL-ISVSS--D---------RKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 166 -~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l-~~~~~--d---------g~i~vwd~~~~~~~~~~~ 229 (612)
.+.-..+++|..........+. -....=..+.|++-|.-| +.++. | .++++.+++.......+
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L- 267 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL- 267 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-
Confidence 3556789999877332222111 112233457788877632 22222 2 46888887744555555
Q ss_pred ccCCccccEEEEEEecCCCEEEEEe--CCCcEEEEEe
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVS--ADKSAKVWEI 264 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~iw~~ 264 (612)
...++|.++.|+|+++.++++. .-..+.++|+
T Consensus 268 ---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 268 ---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred ---CCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 6689999999999998776653 3345666665
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.6e-14 Score=125.81 Aligned_cols=359 Identities=16% Similarity=0.185 Sum_probs=218.4
Q ss_pred EEEEecCCEEEEEeCCCCceeeEeccC---CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEE
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEFYGEH---GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDL 108 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 108 (612)
.+++-+.-.+.+|+...........++ ....+..++|++|+++|.+. +..++|++..+...+ +......+.++
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---lt~~~~~~~~L 79 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---LCVELKKTYDL 79 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---EEeccceeeee
Confidence 345555677888887653333322233 55678899999999999885 568999999988632 22233389999
Q ss_pred EECCCCCEEEEEeC-------CCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 109 QWSPDGLRIVACGD-------GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 109 ~~s~~~~~l~~~~~-------~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
.|||-|.+|.+--. .....-+.+|...++.....+......-++..|++|.. ++.--..+.+.+|+....+
T Consensus 80 ~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 80 LFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFK 157 (566)
T ss_pred eecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchh--hhhhhhcceEEEEecCCcc
Confidence 99999999876321 11112355666666444444443333336889999985 4544456679999988754
Q ss_pred eeecccccccceEEEEECCCCC--eEEE-----EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE-E
Q 007229 182 FKLSHREHSNFVNCIRFSPDGS--KLIS-----VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT-V 253 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~--~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~ 253 (612)
.... +-|...|..+.+||.+. .+++ .+.-+.++||..........+....-....=..+.|++-|.-|++ +
T Consensus 158 ~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLa 236 (566)
T KOG2315|consen 158 TIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLA 236 (566)
T ss_pred ceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEE
Confidence 3332 23677899999998743 3333 244566888876533222222111011112223344433332111 1
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+. |++ .++
T Consensus 237 st-------dVD---ktn-------------------------------------------------------------- 244 (566)
T KOG2315|consen 237 ST-------DVD---KTN-------------------------------------------------------------- 244 (566)
T ss_pred EE-------eec---CCC--------------------------------------------------------------
Confidence 11 010 000
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
..+ ..+.++++.+++...
T Consensus 245 ------~SY----YGEq~Lyll~t~g~s---------------------------------------------------- 262 (566)
T KOG2315|consen 245 ------ASY----YGEQTLYLLATQGES---------------------------------------------------- 262 (566)
T ss_pred ------ccc----cccceEEEEEecCce----------------------------------------------------
Confidence 000 011222333222110
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE--EecCCeEEEEEccCcccccceeec
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV--GGQNGKLHIYSISGNTLTEEMVLE 491 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~ 491 (612)
..-.+...++|.++.|+|+++.+++ |..-..+.|||++..-+ . .
T Consensus 263 -----------------------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---~--d 308 (566)
T KOG2315|consen 263 -----------------------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---F--D 308 (566)
T ss_pred -----------------------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---E--e
Confidence 0111123457999999999987665 55667899999885433 3 3
Q ss_pred cccCceEEEEEcCCCcEEEEEcCC---CeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec------CcEEE
Q 007229 492 KHRGAITVIQYSPDVSMFASADGN---REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI------DTCVI 562 (612)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------d~~i~ 562 (612)
-..++-+++-|+|.|++|+.++-+ |.+-|||+.+.+++ ..+. ...-+-+.|+|||++++|++. |+.++
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-AKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc-cccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 345788899999999999988754 88999999997776 3333 344567899999999998863 67799
Q ss_pred EEEccC
Q 007229 563 IYEIGK 568 (612)
Q Consensus 563 iwd~~~ 568 (612)
||++..
T Consensus 386 iwhytG 391 (566)
T KOG2315|consen 386 IWHYTG 391 (566)
T ss_pred EEEecC
Confidence 999975
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.73 E-value=2e-11 Score=124.42 Aligned_cols=495 Identities=12% Similarity=0.115 Sum_probs=271.8
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEE----eCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIR----YLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~ 89 (612)
....+.|.++.|-+|...+..+. +|.|.+. +..+.. +.....-...|.|++||||+.+||....++++.+-+-.
T Consensus 72 ~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 72 DDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred cCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 44567999999999998777776 8999888 544433 23344457899999999999999999888888775311
Q ss_pred ----C---------C--ce-------eeeeeee------------------------cCCCeEEEEECCCCCEEEEEeC-
Q 007229 90 ----N---------G--FV-------LKNEFKV------------------------LSGRIDDLQWSPDGLRIVACGD- 122 (612)
Q Consensus 90 ----~---------~--~~-------~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~- 122 (612)
. + +. ...++.+ +...-..++|-.||+++|+.+-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 0 00 0001100 2234567889999999998875
Q ss_pred -CCC-eeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec---CCeEEEEeCC---CCeeeecccccccceE
Q 007229 123 -GKG-KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE---DFLVNFYEGP---PFKFKLSHREHSNFVN 194 (612)
Q Consensus 123 -~~~-~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~---~~~~~~~~~~~~~~v~ 194 (612)
..+ ...++||.-+ |.....-..-.+--.+++|.|.|+ ++|+... ...|.+|.-+ -++....+......|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceee
Confidence 222 3344444433 444444444444456789999999 5777654 3567777632 2333333334567899
Q ss_pred EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 195 CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 195 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
.++|++|+..||....|. |.+|-..+.....+....-.....+..+.|+|. ...|...+.+|.+..++.. ...
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~-----~~v 382 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA-----WDV 382 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE-----EEE
Confidence 999999999999877655 999998776643332212133444556999994 4557777777888777761 000
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEE
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAII 353 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 353 (612)
.. .. ....+. ...++..+ | ..+.
T Consensus 383 ~~---s~-----------------------------------------~~~~~D--~g~vaVID--G---------~~ll 405 (928)
T PF04762_consen 383 SR---SP-----------------------------------------GSSPND--NGTVAVID--G---------NKLL 405 (928)
T ss_pred Ee---cC-----------------------------------------CCCccC--ceEEEEEe--C---------CeEE
Confidence 00 00 000000 00011111 1 2233
Q ss_pred EEEcCCceeee----eceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEE
Q 007229 354 KWIRGVGYSSK----LEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELA 427 (612)
Q Consensus 354 ~wd~~~~~~~~----~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (612)
+-.++....+. ..-....+|.++++ ++..+++...|+.+.+|................. .+....
T Consensus 406 lTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~------ 476 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLS---SISLDS------ 476 (928)
T ss_pred EecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhh---hccccc------
Confidence 33333222211 11115678888998 4445999999999998886554322100000000 000000
Q ss_pred EEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC---CeEEEEEccCccc-ccceeeccccCceEEEEEc
Q 007229 428 LVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN---GKLHIYSISGNTL-TEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~-~~~~~~~~~~~~i~~~~~s 503 (612)
............+..++|..+...++....+ ..+.++++..... ........-.+.+..+...
T Consensus 477 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (928)
T PF04762_consen 477 -------------MDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSS 543 (928)
T ss_pred -------------ccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeC
Confidence 0000000012346778888777776666554 5788888743321 1122233334556666666
Q ss_pred CCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCC-c-EEEEeecCcEEEEEEccCCCcceeeeecccc
Q 007229 504 PDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS-T-MVATGSIDTCVIIYEIGKPASSRITIKNAHL 581 (612)
Q Consensus 504 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~ 581 (612)
++...++.-..+|.+...+..........+......+..+.+.... + .++.-+..|.+++ . + ..+ .
T Consensus 544 ~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n--~-~~l------a 611 (928)
T PF04762_consen 544 PDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---N--S-RLL------A 611 (928)
T ss_pred CCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---C--C-EEE------e
Confidence 6655566667789888776665544322233222222222332222 1 3333334444443 1 1 222 2
Q ss_pred cCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 582 GGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 582 ~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
..+++....+...|+|. ....+++.++.
T Consensus 612 ~~~tSF~v~~~~Ll~TT-~~h~l~fv~L~ 639 (928)
T PF04762_consen 612 SNCTSFAVTDSFLLFTT-TQHTLKFVHLN 639 (928)
T ss_pred cCCceEEEEcCEEEEEe-cCceEEEEECc
Confidence 45666666544444444 44557776665
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=2.6e-17 Score=142.33 Aligned_cols=230 Identities=15% Similarity=0.120 Sum_probs=195.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
....+.|+.+|+.|+.++ -|.|-.+|..++++...+. -...|..+.|-.+.+++|++- ...+.|||-..-+ +. .+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-lH-Cl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-LH-CL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-Ee-eh
Confidence 345689999999999998 7999999999998887665 456899999999999999995 4589999987765 32 22
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
. ....|..+.|.|.--+|++++..+ ++.-.+..+|+.+..+....+.+..++-+|-+. ++-+|...|+|.+|...
T Consensus 207 k-~~~~v~rLeFLPyHfLL~~~~~~G---~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 207 K-RHIRVARLEFLPYHFLLVAASEAG---FLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPN 281 (545)
T ss_pred h-hcCchhhhcccchhheeeecccCC---ceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCC
Confidence 2 235788999999998888888887 677788889999999999999999999999988 79999999999999999
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS 258 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 258 (612)
..+++..+..|.++|.++++.++|+|+++.+.|..++|||++.-..+..+. ...+...+++|..| +++.+....
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----tp~~a~~ls~Sqkg--lLA~~~G~~ 355 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR----TPHPASNLSLSQKG--LLALSYGDH 355 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee----cCCCcccccccccc--ceeeecCCe
Confidence 999999999999999999999999999999999999999999888777772 24567788898666 444445568
Q ss_pred EEEEEe
Q 007229 259 AKVWEI 264 (612)
Q Consensus 259 i~iw~~ 264 (612)
+.+|.-
T Consensus 356 v~iw~d 361 (545)
T KOG1272|consen 356 VQIWKD 361 (545)
T ss_pred eeeehh
Confidence 999964
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.71 E-value=1.2e-12 Score=120.33 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=122.2
Q ss_pred CeEEEeec--CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC-CeeeEEEEEecCC--c--eeeeeccCCceEEEE
Q 007229 81 GSVRIWGT--HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK-GKSFVRAFMWDSG--T--TVGDFDGHSRRVLSC 153 (612)
Q Consensus 81 ~~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~~--~--~~~~~~~~~~~v~~~ 153 (612)
+.|.+|++ .+++...............++++|++++|.++.... ....+..+.++.. + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 68999888 444421112233556778899999999999998852 2225677777753 2 334444455667789
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCC-Ceeeec--cc-----------ccccceEEEEECCCCCeEEEEEc-CCcEEEEe
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLS--HR-----------EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYD 218 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~--~~-----------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd 218 (612)
+++|++++++++...+|.|.++++.. +..... .. .......++.|+|+++++++... ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 99999998677767799999999876 433322 11 12245789999999999887654 45699999
Q ss_pred cCCCC--eeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEe
Q 007229 219 GKSGE--KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEI 264 (612)
Q Consensus 219 ~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~ 264 (612)
+.... .................++|+|+++++++..+ ++.|.++++
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence 87665 32211111255667899999999998877665 577888888
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.71 E-value=1.8e-15 Score=126.02 Aligned_cols=255 Identities=15% Similarity=0.223 Sum_probs=187.6
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe-cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcE
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD-GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSA 259 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 259 (612)
.+...++||.+.++....-|...-+++.+.|.+++||- .+.++....+. .....+++++.+.++...|+++-..|++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh--hhCCCCceEeeeeccceEEEEEEecceE
Confidence 34556789999999988888888899999999999995 34455544441 2456788999999999999999999998
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ec
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KI 338 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 338 (612)
.-+.+.++-+. ....+....|...+..+.|+ +
T Consensus 93 tefs~sedfnk----------------------------------------------m~~~r~~~~h~~~v~~~if~~~- 125 (404)
T KOG1409|consen 93 TEFALSEDFNK----------------------------------------------MTFLKDYLAHQARVSAIVFSLT- 125 (404)
T ss_pred EEEEhhhhhhh----------------------------------------------cchhhhhhhhhcceeeEEecCC-
Confidence 88877322111 11224455688888888888 5
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceee
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLS 418 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (612)
...+++.+.|..+.---.+.+.... -|.+..
T Consensus 126 -~e~V~s~~~dk~~~~hc~e~~~~lg-----------------------------~Y~~~~------------------- 156 (404)
T KOG1409|consen 126 -HEWVLSTGKDKQFAWHCTESGNRLG-----------------------------GYNFET------------------- 156 (404)
T ss_pred -ceeEEEeccccceEEEeeccCCccc-----------------------------ceEeec-------------------
Confidence 6788888877665322111111100 000000
Q ss_pred ecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceE
Q 007229 419 LALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAIT 498 (612)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~ 498 (612)
..+++.+.-. +..+|...|.|....+....+.....+.+|.+.++
T Consensus 157 ---------------------------------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~ 201 (404)
T KOG1409|consen 157 ---------------------------------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT 201 (404)
T ss_pred ---------------------------------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceE
Confidence 0011111111 56677788888888877777777889999999999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+++|.|..+.|.++..|..+.+||+...+-....+.+|...|..+...+--+.|.+++.||.|.+|+++.
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999999999999999999888777677888999999999999889999999999999999864
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=9e-15 Score=122.76 Aligned_cols=237 Identities=14% Similarity=0.202 Sum_probs=155.1
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD 78 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~ 78 (612)
||+-..-+++.... ...|+++.|.+||..+++++ +..|.|||.+++..+....-.-+.++-+.|||||.+|..+.
T Consensus 181 ~~s~~~~qvl~~pg---h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPG---HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred cccccchhheeCCC---CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 34444444443333 24799999999999999998 68999999999988876545677899999999999999999
Q ss_pred CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC
Q 007229 79 VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 79 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (612)
-|+..++|+..... .......-++.|...+|+|+|++|+.+..... .+.++.|...
T Consensus 258 ~davfrlw~e~q~w-t~erw~lgsgrvqtacWspcGsfLLf~~sgsp-----------------------~lysl~f~~~ 313 (445)
T KOG2139|consen 258 CDAVFRLWQENQSW-TKERWILGSGRVQTACWSPCGSFLLFACSGSP-----------------------RLYSLTFDGE 313 (445)
T ss_pred ccceeeeehhcccc-eecceeccCCceeeeeecCCCCEEEEEEcCCc-----------------------eEEEEeecCC
Confidence 99999999665443 22233344569999999999999887766552 3445555444
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC--------cEEEEecCCCCeeeeeec
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR--------KGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~vwd~~~~~~~~~~~~ 230 (612)
.....-.++.....-+-|+..-.....-+--.+++.+++|.|.|.+|++.-..+ .|.+||.+..-.+.....
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c 393 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC 393 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec
Confidence 331111233233333334332111111111246789999999999999876543 356787664433332211
Q ss_pred cCCccccEEEEEEec---CCCEEEEEeCCCcEEEEEe
Q 007229 231 EDGHHGSIYAVSWSP---DGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~iw~~ 264 (612)
..........++|.| ++.+|..+=..|.+.-|++
T Consensus 394 g~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 394 GMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 111222355667766 5677777777888888887
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.6e-15 Score=125.89 Aligned_cols=259 Identities=11% Similarity=0.089 Sum_probs=183.0
Q ss_pred CccccEEEEEEecCCC--EEEEEeCCCcEEEEEeecCCCCCeeEeee-eccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 233 GHHGSIYAVSWSPDGK--KVLTVSADKSAKVWEILEDGSGGRVIKTF-ASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
.....+..++|.-+++ .+...+.+..+..+.+ ......... ...........+.+....+..++++..+|.+.
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~----~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVI----EEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQ 128 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccc----cCCccccccccccccccccccccchhhcCCEEEEEecCCcEE
Confidence 3445677778876544 3444435666777666 443333332 11111222345666667789999999999999
Q ss_pred EEEcCCCC---CCceeecCcccceeEEEEEecCCcEEEEEecC--CcEEEEEcCCceeeeeceecccceEEEEeeccEEE
Q 007229 310 IFSASNLD---KAPLSFSGHVKNVSTLTALKISQQTILSSSYD--GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIF 384 (612)
Q Consensus 310 ~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 384 (612)
+|....+. .+...+..+ ..+..+.-.+....++++|+.. ..+.+||+...+.+..
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~------------------- 188 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS------------------- 188 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeee-------------------
Confidence 99977543 222233222 3444454455556777788888 7888888876533221
Q ss_pred EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC--C
Q 007229 385 TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD--G 462 (612)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~ 462 (612)
..+-.. ..-.+..+-.++.+.|-+. .
T Consensus 189 ------------aKNvpn----------------------------------------D~L~LrVPvW~tdi~Fl~g~~~ 216 (412)
T KOG3881|consen 189 ------------AKNVPN----------------------------------------DRLGLRVPVWITDIRFLEGSPN 216 (412)
T ss_pred ------------ccCCCC----------------------------------------ccccceeeeeeccceecCCCCC
Confidence 111110 0000111223677888887 8
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
..+|+++.-+.+++||.+.++ .+...+.-...+++++...|+++++.+|..-+.+..+|+++++.....+.+-.+.|++
T Consensus 217 ~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred ceEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 899999999999999998665 4466777778899999999999999999999999999999999987778889999999
Q ss_pred EEecCCCcEEEEeecCcEEEEEEccC
Q 007229 543 LAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 543 ~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+..+|.+++||+++-|+.+||+|+++
T Consensus 296 ih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EEEcCCCceEEeeccceeEEEeeccc
Confidence 99999999999999999999999998
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.3e-14 Score=129.34 Aligned_cols=288 Identities=15% Similarity=0.107 Sum_probs=197.0
Q ss_pred cCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec
Q 007229 57 EHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD 135 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~ 135 (612)
+|...-+.|..+|||+|+ |+|..-..|++||+.+.. ++..-......|.-.-.+-|-..++..-.+. +|.+. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v~L~~DR---~IefH--a 122 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSVFLQNDR---TIEFH--A 122 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhheEeecCc---eeeeh--h
Confidence 477888999999999986 567788899999999875 4333333334555555555555555555444 11111 1
Q ss_pred CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 136 SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
....-..+ .-+..-..++++.-..- |..++....|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|.
T Consensus 123 k~G~hy~~-RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 123 KYGRHYRT-RIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred hcCeeeee-ecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 11000000 01122344555544443 55555556799999999999999988889999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccC---Cccc-----cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 216 IYDGKSGEKIGEFSSED---GHHG-----SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~---~~~~-----~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
.||.++...+..+.... .|.+ .|+++.|+.+|-.+++|..+|.+.+||+ ...+++..-
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL----Ra~~pl~~k---------- 266 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL----RASKPLLVK---------- 266 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc----ccCCceeec----------
Confidence 99999887776663211 2333 4999999999999999999999999999 555444322
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
-.+..-+|..+.|.+.+++--+.......+++||-.+++......
T Consensus 267 -----------------------------------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 267 -----------------------------------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred -----------------------------------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 122344667777764334444444456789999999998877655
Q ss_pred ecccceEEEEe--eccEEEEecCCCeEEEEecCCCCC
Q 007229 368 KYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGEC 402 (612)
Q Consensus 368 ~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~ 402 (612)
....+..+++ +.++++++..+..+..|-++...+
T Consensus 312 -pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 312 -PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred -ccCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 4444666665 888999999999888777665443
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.7e-14 Score=128.60 Aligned_cols=152 Identities=11% Similarity=0.196 Sum_probs=110.4
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccce----eeccccC-----ceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM----VLEKHRG-----AITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----~~~~~~~-----~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
++++.+++-..+|++|+.+|.|..||.+........ ....|.+ .|+++.|+.+|-.+++|..+|.+.|||+
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 555666666667777777777777776654431111 1122222 4999999999999999999999999999
Q ss_pred CCcceeeecccccccceeEEEecCC--CcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccC
Q 007229 524 VSKEVKLNNMLFHTARINCLAWSPS--STMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGE 600 (612)
Q Consensus 524 ~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~ 600 (612)
++.+++...-.+..-+|..+.|.+. +..+++. +...++|||-.+ + +........ ..+..+++. ++..++++-+
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~-G-k~~asiEpt-~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT-G-KPMASIEPT-SDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhccccc-C-Cceeecccc-CCcCceeeecCCceEEEecC
Confidence 9999876555556678999999875 4456655 456799999998 5 566666544 349999998 7888888888
Q ss_pred CCeEEEEE
Q 007229 601 DACIRVWR 608 (612)
Q Consensus 601 d~~i~~w~ 608 (612)
+..+..|=
T Consensus 334 ~~~m~~yy 341 (703)
T KOG2321|consen 334 SSKMHTYY 341 (703)
T ss_pred CCcceeEE
Confidence 87776553
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=1.5e-12 Score=119.83 Aligned_cols=243 Identities=16% Similarity=0.146 Sum_probs=165.4
Q ss_pred ceeEEEEccCCCEEEEecC-----CEEEEEeCCCC--ce--eeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecC
Q 007229 20 RGILISGNPKTDTILYCNG-----RSVLIRYLDKP--LH--VEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTH 89 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~-----~~i~i~~~~~~--~~--~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~ 89 (612)
....++++|++++|.+... +.|..|.+... ++ +............++++|++++|+++. .+|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 5667999999999988853 58888887753 33 222222345567899999999999987 48999999998
Q ss_pred CCceeeee--eee-----------cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--ee--eee-ccCCceEE
Q 007229 90 NGFVLKNE--FKV-----------LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TV--GDF-DGHSRRVL 151 (612)
Q Consensus 90 ~~~~~~~~--~~~-----------~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~--~~~-~~~~~~v~ 151 (612)
....+... ... ......++.|+|||+++++.....+ .|.++.++... .. ..+ .......+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D--~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD--RVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT--EEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC--EEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 74323222 111 1245789999999999998876655 47778887544 21 222 23446688
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCC--CCeee--eccc----cc--ccceEEEEECCCCCeEEEEEc-CCcEEEEecC
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFK--LSHR----EH--SNFVNCIRFSPDGSKLISVSS-DRKGLIYDGK 220 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~--~~~~----~~--~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~ 220 (612)
.++|+|+++++.++...++.|.++++. ++... ..+. +. ......++++|||++|+++.. .+.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999999888888889999999887 44322 2111 11 125788999999999988765 5779999983
Q ss_pred --CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEee
Q 007229 221 --SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEIL 265 (612)
Q Consensus 221 --~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~~ 265 (612)
+++. ..+............++++|+|++|+++.. ++.|.+|+++
T Consensus 276 ~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 276 PATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 2333 222211122445789999999999998874 5789999884
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.9e-14 Score=134.12 Aligned_cols=222 Identities=12% Similarity=0.083 Sum_probs=146.9
Q ss_pred CCceeEEEEccCCCE--EEEec--C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-----cCeEEEe
Q 007229 18 RGRGILISGNPKTDT--ILYCN--G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-----SGSVRIW 86 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~--l~~~~--~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-----d~~i~iw 86 (612)
.+...+-.|||||+. +++.+ + ..|++.++.+++..+ +....+.....+|||||+.||..+. +..+.+|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 345677899999986 33343 2 489999999887655 4445556667899999999887642 2234557
Q ss_pred ecCCCc--eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeeeccCCceEEEEEEcCCCCE
Q 007229 87 GTHNGF--VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDFDGHSRRVLSCEFKPTRPF 161 (612)
Q Consensus 87 d~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (612)
++..+. ................+|+|||++|+..++..+. .++|.++ .+.....+..+...+....|+|||+.
T Consensus 263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~--~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR--PRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC--ceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 776531 1222222223445678999999999988764432 3466554 23345556556667788999999996
Q ss_pred EEEEeecC--CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc---CCcEEEEecCCCCeeeeeeccCCccc
Q 007229 162 RIATCGED--FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS---DRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 162 ~l~~~~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
++++...+ ..|.+||+.+++..... .....+....|+|||+.|+.... ...|.++|+..++..... ...+
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt----~~~g 415 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV----IGSG 415 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----cCCC
Confidence 44454433 47999999988765433 23345678999999998876543 356888998877655444 3344
Q ss_pred cEEEEEEecCC
Q 007229 237 SIYAVSWSPDG 247 (612)
Q Consensus 237 ~v~~i~~~~~~ 247 (612)
.+...+|+|-.
T Consensus 416 ~~~~p~Ws~~~ 426 (428)
T PRK01029 416 EKRFPSWGAFP 426 (428)
T ss_pred cccCceecCCC
Confidence 56677787743
No 248
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.68 E-value=2.3e-12 Score=112.72 Aligned_cols=427 Identities=16% Similarity=0.140 Sum_probs=234.2
Q ss_pred EEECCC--CCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEE------eecCCeEEEEeC
Q 007229 108 LQWSPD--GLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIAT------CGEDFLVNFYEG 177 (612)
Q Consensus 108 ~~~s~~--~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~------~~~d~~i~~wd~ 177 (612)
.-..|| |..++..+.+. +|..+ +++ ...+..|-+-|+...|+|+|+.+..+ +...+-+.+.+.
T Consensus 42 ~~l~PDI~GD~IiFt~~Dd------lWe~slk~g~-~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~ 114 (668)
T COG4946 42 YYLNPDIYGDRIIFTCCDD------LWEYSLKDGK-PLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPS 114 (668)
T ss_pred hhcCCcccCcEEEEEechH------HHHhhhccCC-eeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeC
Confidence 334564 66676666665 77766 444 34567788999999999999963331 223456778888
Q ss_pred CCCeeeec-ccccccceEEEEECCCCCeEEEEEcCCcEE----EEecCCCCe-eeeeeccCCccccEEEEEEecCCCEEE
Q 007229 178 PPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGL----IYDGKSGEK-IGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 178 ~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~----vwd~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
+.|+..+. +-+ ..--.-.-|.|||+.+++...-.-.. +|.+..... ...+ .-++.+.+.+- || .++
T Consensus 115 e~Ge~kRiTyfG-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L-----nlGpathiv~~-dg-~iv 186 (668)
T COG4946 115 EDGEAKRITYFG-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL-----NLGPATHIVIK-DG-IIV 186 (668)
T ss_pred CCCcEEEEEEec-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeec-----cCCceeeEEEe-CC-EEE
Confidence 88876554 222 22223346899999887755432222 233222111 1111 23455555543 45 233
Q ss_pred EEeCCCc------------EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 252 TVSADKS------------AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 252 ~~~~dg~------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
.|-..-. =++|--.+.+.+.+..-.+..+-+ +.+.......+....+|.=.+|...-..+-
T Consensus 187 igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS-------~PmIV~~RvYFlsD~eG~GnlYSvdldGkD 259 (668)
T COG4946 187 IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVS-------SPMIVGERVYFLSDHEGVGNLYSVDLDGKD 259 (668)
T ss_pred EccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcC-------CceEEcceEEEEecccCccceEEeccCCch
Confidence 3321111 234433222222222222222110 001111223333444554444443332222
Q ss_pred ceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecC
Q 007229 320 PLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~ 398 (612)
++.|+.--.--.-+ +.+++.++- +..|.|.+||..+.....+... ++
T Consensus 260 ---lrrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~----------------------------lp 307 (668)
T COG4946 260 ---LRRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIG----------------------------LP 307 (668)
T ss_pred ---hhhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecC----------------------------Cc
Confidence 22232211111111 222444443 2346777887766554433211 00
Q ss_pred CCCCCccceeccCCCcceee-ecCCCCcEEEEEeeccEEEee-cccceeeecccceEEEEEEccCCCeEEEEecCC-eEE
Q 007229 399 EGECGDAEHIDVGSQPLDLS-LALSSPELALVSTESGVILLD-SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-KLH 475 (612)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~v~ 475 (612)
.... ........+..-+. +++.....++.-+.+...+.+ .....-.+.++..|.-..+.-+++-++.|..|| .+-
T Consensus 308 l~rk--~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~ 385 (668)
T COG4946 308 LDRK--KKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLG 385 (668)
T ss_pred cccc--cccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEE
Confidence 0000 00000000111111 333334455555555555554 233334445666788888888888999999999 999
Q ss_pred EEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 476 i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
|||..+++. ..+...-+.|.++..+|+|++++.+.....+-+.|+.++.... .-....+-|+...|+|+++++|-+
T Consensus 386 iyd~~~~e~---kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 386 IYDKDGGEV---KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred EEecCCceE---EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcCCceeEEEe
Confidence 999999885 5566667889999999999999999999999999999998863 334456789999999999999988
Q ss_pred ecCc----EEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 556 SIDT----CVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 556 ~~d~----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
--+| .|+++|+.. + + +.......+.=.+-+|. ++++|.-
T Consensus 462 fP~gy~tq~Iklydm~~-~-K-iy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 462 FPEGYYTQSIKLYDMDG-G-K-IYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred cCcceeeeeEEEEecCC-C-e-EEEecCCcccccCcccCCCCcEEEE
Confidence 6554 699999987 3 2 22222233333455666 6666543
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.66 E-value=6.1e-13 Score=117.29 Aligned_cols=335 Identities=14% Similarity=0.172 Sum_probs=208.9
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
.+|+-.+...-..+....-++....|||.|.+|++.... .|.+|.-..+..+..+ .| ..|..+.|+|++++|.+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~----~~-~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF----RH-PDVKYLDFSPNEKYLVT 88 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee----ec-CCceecccCcccceeee
Confidence 445555544444454466789999999999999987664 4999998887766666 33 46899999999999998
Q ss_pred EeCCC---------------cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC
Q 007229 253 VSADK---------------SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 253 ~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
-+..+ .+.+||. .++..+..+.........-.+.-...++.+. +--....+.++++.. .
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~----~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~-ARvv~~sl~i~e~t~-n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDI----ASGMIVFSFNGISQPYLGWPVLKFSIDDKYV-ARVVGSSLYIHEITD-N 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEec----cCceeEeeccccCCcccccceeeeeecchhh-hhhccCeEEEEecCC-c
Confidence 65433 4999999 9999999988765432221122222223333 333667888888622 2
Q ss_pred CCceeecC-cccceeEEEEEec-CCcEEEE-----EecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEec-
Q 007229 318 KAPLSFSG-HVKNVSTLTALKI-SQQTILS-----SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAG- 387 (612)
Q Consensus 318 ~~~~~~~~-~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~- 387 (612)
.....+.. ....+....+++. +...|+. .+.++.+++|.+..+.......-....-..+.+ .+++++.-.
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 11111111 1245566666632 2333443 456677888887755544433222221122222 222222110
Q ss_pred ----------CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee-cccceEEEE
Q 007229 388 ----------FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI-DLGFTVTAC 456 (612)
Q Consensus 388 ----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 456 (612)
.+..++++++.. +.+... ...++|...
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e------------------------------------------~~i~V~~~~~~pVhdf 280 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITE------------------------------------------RSIPVEKDLKDPVHDF 280 (561)
T ss_pred EeeecccceeccceEEEEeecc------------------------------------------cccceeccccccceee
Confidence 011222222221 111111 456789999
Q ss_pred EEccCCCeEEEE--ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC---CeEEEEecCCcceeee
Q 007229 457 AIAPDGSEAIVG--GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN---REAIVWDRVSKEVKLN 531 (612)
Q Consensus 457 ~~s~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~ 531 (612)
+|.|.++.+++. -.+-.+.++|++++ + ...+ ....=+.+-|||.+++++.++-| |.+-+||.........
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l--~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~ 355 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGN-L--RFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG 355 (561)
T ss_pred eecccCCceeEEecccccceeecccccc-e--EEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE
Confidence 999998887664 47788999999876 3 2222 23445667899999999998765 7899999988877654
Q ss_pred cccccccceeEEEecCCCcEEEEee------cCcEEEEEEccC
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGS------IDTCVIIYEIGK 568 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~------~d~~i~iwd~~~ 568 (612)
.+.+ ...+-+.|+||++++.+.. .|..++|||+..
T Consensus 356 ~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 356 AFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred Eeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5543 3345678999999887664 477899999986
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.66 E-value=3.9e-13 Score=118.46 Aligned_cols=234 Identities=12% Similarity=0.126 Sum_probs=159.9
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC---------------e
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG---------------S 82 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~---------------~ 82 (612)
.-.+..+.+||.|++|++.....|.+|.-+....+..+. | ..|.-+.|||.++||.+=+..+ .
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 346788999999999999999999999988776555554 3 4689999999999999965333 4
Q ss_pred EEEeecCCCceeeeeeeecCCC--eE-EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC---CceEEEEEEc
Q 007229 83 VRIWGTHNGFVLKNEFKVLSGR--ID-DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH---SRRVLSCEFK 156 (612)
Q Consensus 83 i~iwd~~~~~~~~~~~~~~~~~--i~-~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~~v~~~~~~ 156 (612)
+.+||..++. +...+.....+ .. -+.|+-+.+++|-...+. +.|+.. ++. +...+.+ ...+....|+
T Consensus 110 ~~vwd~~sg~-iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s----l~i~e~-t~n-~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 110 VFVWDIASGM-IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS----LYIHEI-TDN-IEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred eeEEeccCce-eEeeccccCCcccccceeeeeecchhhhhhccCe----EEEEec-CCc-cccCchhhccccceeeEEec
Confidence 9999999998 55566655554 44 788999999888765443 445543 222 1111111 3567888999
Q ss_pred CCCCE-EEEE-----eecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-----------CCcEEEEec
Q 007229 157 PTRPF-RIAT-----CGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-----------DRKGLIYDG 219 (612)
Q Consensus 157 ~~~~~-~l~~-----~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~vwd~ 219 (612)
|.++. .|+. .+.++.+++|.+.....+.+-.-....=..+.|.+.|++|+.--. ...+.++++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 97432 2333 466789999998877665543323333456788999987765321 245777877
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe--CCCcEEEEEe
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS--ADKSAKVWEI 264 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~iw~~ 264 (612)
+........ ...++|...+|.|.++.+++.+ .+-.+.++|+
T Consensus 263 ~e~~i~V~~----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 263 TERSIPVEK----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred cccccceec----cccccceeeeecccCCceeEEecccccceeeccc
Confidence 643333332 5578899999999887776654 4556666665
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=3e-14 Score=117.70 Aligned_cols=160 Identities=23% Similarity=0.349 Sum_probs=117.5
Q ss_pred EEEEECCCCCEEEEEeCC---CC-e---eeEEEEEec-CCceeeeecc-CCceEEEEEEcCCCCEEEE-EeecCCeEEEE
Q 007229 106 DDLQWSPDGLRIVACGDG---KG-K---SFVRAFMWD-SGTTVGDFDG-HSRRVLSCEFKPTRPFRIA-TCGEDFLVNFY 175 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~---~~-~---~~i~i~~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-~~~~d~~i~~w 175 (612)
..+.|+|+|++|+.-... .. . ....++.++ .+.+...+.- ..++|.+++|+|+++.+++ .|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999988776551 11 1 124566665 3444555543 3457999999999985433 34567899999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
|++ ++.+..+. ...+..+.|+|+|++|++++.+ |.+.+||.++.+.+... .|. .+..++|+|||+++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~----~~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF----EHS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc----ccC-cEEEEEEcCCCCEEEE
Confidence 997 55555553 5678899999999999998754 67999999988888777 444 4789999999999999
Q ss_pred EeC------CCcEEEEEeecCCCCCeeEeeee
Q 007229 253 VSA------DKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 253 ~~~------dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
+.. |+.++||+. .|+.+....
T Consensus 161 a~t~~r~~~dng~~Iw~~-----~G~~l~~~~ 187 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSF-----QGRLLYKKP 187 (194)
T ss_pred EEeccceeccccEEEEEe-----cCeEeEecc
Confidence 874 688999998 466655543
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.7e-14 Score=133.65 Aligned_cols=217 Identities=14% Similarity=0.157 Sum_probs=143.8
Q ss_pred CCCceeEEEEccCCCEEEEec--C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcC--eEEEeecC
Q 007229 17 ERGRGILISGNPKTDTILYCN--G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSG--SVRIWGTH 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~--~i~iwd~~ 89 (612)
+...+...+|||||+.|++.+ + ..|.+||+.+++... +....+.+...+|||||+.|+. .+.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 345678899999999999976 2 479999999887654 4444555668999999998874 44454 68888998
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
+++ . ..+..+........|+|||+.|+..++..+. ..++.++ +++. ..+...........|+|++++++++..
T Consensus 276 ~~~-~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~--~~iy~~d~~~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 276 SRQ-L-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK--PQIYKVNVNGGRA-ERVTFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred CCC-e-EEcccCCCCcCCeEECCCCCEEEEEECCCCC--ceEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEc
Confidence 876 3 2455566667778999999999888765433 2455554 5543 333222233446789999997555544
Q ss_pred cCC--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 168 EDF--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 168 ~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
.++ .|.+||+.+++....... .......|+|||+.++..+.+ ..+.++++. +.....+. .+.+.+...+
T Consensus 351 ~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~---~~~g~~~~p~ 424 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP---TAQGEVREPS 424 (430)
T ss_pred cCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc---CCCCCcCCCc
Confidence 444 578889988765432221 222356899999998877654 346677764 44444442 3344566667
Q ss_pred Eec
Q 007229 243 WSP 245 (612)
Q Consensus 243 ~~~ 245 (612)
|+|
T Consensus 425 ws~ 427 (430)
T PRK00178 425 WSP 427 (430)
T ss_pred cCC
Confidence 765
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.1e-13 Score=128.40 Aligned_cols=218 Identities=14% Similarity=0.079 Sum_probs=141.6
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE---EeeCc--CeEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA---SADVS--GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la---s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
.|.+.|.+.+...+ +......+..-+|||||+.++ +...+ ..|.+.++.+++. ..+....+.....+|||||
T Consensus 166 ~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCCC
Confidence 67788887665544 555666778899999997532 34333 3577788887753 3444456666778999999
Q ss_pred CEEEEEeCCCCeeeEEE--EEecC---CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE--eCCC-Ceeeecc
Q 007229 115 LRIVACGDGKGKSFVRA--FMWDS---GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPP-FKFKLSH 186 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i--~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w--d~~~-~~~~~~~ 186 (612)
++|+..++..+...+.+ ++.+. ++.......+.......+|+|||+.++.+...+|...+| ++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 99998875422212333 33333 233333333334456789999999755555566755555 4432 2223334
Q ss_pred cccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC---CCcEE
Q 007229 187 REHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA---DKSAK 260 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~ 260 (612)
..+...+....|+|||++|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+.... ...|.
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----TSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----CCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 4445567788999999999877653 46999999888765433 22345677899999998876543 24577
Q ss_pred EEEe
Q 007229 261 VWEI 264 (612)
Q Consensus 261 iw~~ 264 (612)
++++
T Consensus 399 ~vdl 402 (428)
T PRK01029 399 LISL 402 (428)
T ss_pred EEEC
Confidence 7777
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.64 E-value=1.3e-13 Score=132.28 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=144.5
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.++|...... +.+..+...+...+|||||++||.++.+ ..|.+||+.+++. ..+..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 3688889875544 4466677789999999999999987643 4799999998853 23445566777899999999
Q ss_pred EEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeeccccccc
Q 007229 116 RIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHSN 191 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~ 191 (612)
.|+......+. ..++.++ ++ ....+..+........|+|+++.++++...++ .|.++|+.+++.. .+..+..
T Consensus 247 ~l~~~~~~~~~--~~i~~~d~~~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGN--PDIYVMDLDGK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG 322 (417)
T ss_pred EEEEEECCCCC--ccEEEEECCCC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC
Confidence 88866543322 2455555 44 34455555555667899999996445544444 5777888776643 3333455
Q ss_pred ceEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 192 FVNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
......|+|+|++++.++.++ .|.+||+.++... .+. . ........|+||+++|+..+.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~---~-~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT---D-TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc---C-CCCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999888776 7899998876543 331 1 12234568999999988877654
No 255
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.7e-14 Score=119.83 Aligned_cols=246 Identities=14% Similarity=0.133 Sum_probs=183.1
Q ss_pred CcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeec------eecccceEEEEeeccEEEEecCCCeEEEEec
Q 007229 325 GHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLE------KKYDARIKCLAAVEEVIFTAGFDNKVWRVPL 397 (612)
Q Consensus 325 ~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~------~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~ 397 (612)
.....++.++|. +.....+...+.+..+..+.+......... .....+|..+...+..|+++-.+|.+.+|..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 345677888888 444555666657777777776665554432 2256778888888999999999999999998
Q ss_pred CCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC-eEEEEecC--CeE
Q 007229 398 CEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS-EAIVGGQN--GKL 474 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d--g~v 474 (612)
..+... . ..+..+....++..+.-++... .+|+|+.. ..+
T Consensus 133 k~~d~h-------s------------------------------s~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 133 KSGDLH-------S------------------------------SKLIKLATGPGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred cCCccc-------c------------------------------ccceeeecCCceeeeccCCCCCceEecCchhcccce
Confidence 755422 0 0111111222345555555444 45668988 889
Q ss_pred EEEEccCcccccceeeccc---------cCceEEEEEcCC--CcEEEEEcCCCeEEEEecCCcceeeecccccccceeEE
Q 007229 475 HIYSISGNTLTEEMVLEKH---------RGAITVIQYSPD--VSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCL 543 (612)
Q Consensus 475 ~i~d~~~~~~~~~~~~~~~---------~~~i~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 543 (612)
.+||+...+. +..-+.- .-.++++.|-|. ...+|++..-+.+++||.+.+......+..-..+++++
T Consensus 176 kiwdle~~~q--iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 176 KIWDLEQSKQ--IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred eeeeccccee--eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 9999987743 2211110 124778899887 88999999999999999998887777777778899999
Q ss_pred EecCCCcEEEEeecCcEEEEEEccCCCcceee-eecccccCeeeEEEe-cCceEEEccCCCeEEEEEecc
Q 007229 544 AWSPSSTMVATGSIDTCVIIYEIGKPASSRIT-IKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 544 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
...|+++++.+|..-+.+..||.+. + ..+. .+.+-.+.|++|... ...+|+++|-|..|||+|+++
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~-~-kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRG-G-KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eecCCCcEEEEecccchhheecccC-c-eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999999998 5 4444 488999999999998 558899999999999999986
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=8.8e-13 Score=117.50 Aligned_cols=232 Identities=15% Similarity=0.202 Sum_probs=156.7
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-----------cCeEEEeecC
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-----------SGSVRIWGTH 89 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-----------d~~i~iwd~~ 89 (612)
-+-+.|||.|.||++-.-..|.+|--++-..++.+. |. .|.-+.|||+.+||+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 357899999999999999899999877766666564 54 5889999999999999542 2469999999
Q ss_pred CCceeeeeeeecCC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 90 NGFVLKNEFKVLSG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 90 ~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
+|. +...+....+ .-.-..||.|++++|-...++ |.|+.-.+-.++..-.-....|....|+|.+. +||--
T Consensus 291 tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s----isIyEtpsf~lld~Kslki~gIr~FswsP~~~-llAYw 364 (698)
T KOG2314|consen 291 TGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS----ISIYETPSFMLLDKKSLKISGIRDFSWSPTSN-LLAYW 364 (698)
T ss_pred ccc-hhcceeccCCCccccceEEeccCCceeEEeccce----EEEEecCceeeecccccCCccccCcccCCCcc-eEEEE
Confidence 998 5556655322 223568999999999888765 33443333222222223446788889999987 56643
Q ss_pred ec-----CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCee-eeeec
Q 007229 167 GE-----DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKI-GEFSS 230 (612)
Q Consensus 167 ~~-----d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~-~~~~~ 230 (612)
.. -..+-+-.+.+++.+++-.-++-.=..|-|-.+|.+|..--. -..+-|+.++..... ...
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-- 442 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-- 442 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--
Confidence 32 245677778888777775555544456777788888876321 122445555544332 222
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCC---CcEEEEEe
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSAD---KSAKVWEI 264 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~iw~~ 264 (612)
.....|...+|-|.|+.+++.+.. .++.+|.+
T Consensus 443 --elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~ 477 (698)
T KOG2314|consen 443 --ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAV 477 (698)
T ss_pred --ecchheeeeeeccCCCeEEEEEccccccceeEEEe
Confidence 456778899999999888776543 34444444
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.3e-13 Score=130.95 Aligned_cols=216 Identities=13% Similarity=0.182 Sum_probs=142.1
Q ss_pred CCceeEEEEccCCCEEEEec--C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcCe--EEEeecCC
Q 007229 18 RGRGILISGNPKTDTILYCN--G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSGS--VRIWGTHN 90 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~~--i~iwd~~~ 90 (612)
.+.+.+..|||||+.|++.+ + ..|++||+.+++... +....+.....+|||||+.||. .+.+|. |.+||+.+
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 34667899999999999985 2 379999999887544 3333344557899999998875 455664 77888887
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
++ . ..+..+.......+|+|||++|+..+...+. ..+|.++ +++. ..+..........+|+|+|++++++...
T Consensus 296 g~-~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~--~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 296 KA-L-TRITRHRAIDTEPSWHPDGKSLIFTSERGGK--PQIYRVNLASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CC-e-EECccCCCCccceEECCCCCEEEEEECCCCC--ceEEEEECCCCCE-EEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 75 3 3445555667789999999999888765443 3566655 4443 3332222333457899999975555554
Q ss_pred CC--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC-C--cEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 169 DF--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD-R--KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 169 d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
++ .|.++|+.+++... +... .......|+|||++|+..+.+ + .+.+++. +|.....+. .+.+.+...+|
T Consensus 371 ~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~---~~~g~~~~p~W 444 (448)
T PRK04792 371 NGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP---AGQGEVKSPAW 444 (448)
T ss_pred CCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc---CCCCCcCCCcc
Confidence 55 45556887776533 2221 112345799999988776653 3 3677776 566555552 34455667777
Q ss_pred ec
Q 007229 244 SP 245 (612)
Q Consensus 244 ~~ 245 (612)
+|
T Consensus 445 sp 446 (448)
T PRK04792 445 SP 446 (448)
T ss_pred CC
Confidence 76
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=1.5e-13 Score=113.53 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=109.7
Q ss_pred ceeEEEEccCCCEEEEecC-----------CEEEEEeCC-CCceeeEec-cCCCceEEEEECCCCCEEEEe--eCcCeEE
Q 007229 20 RGILISGNPKTDTILYCNG-----------RSVLIRYLD-KPLHVEFYG-EHGYPVTVARYSPNGEWIASA--DVSGSVR 84 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~-----------~~i~i~~~~-~~~~~~~~~-~h~~~v~~~~~s~d~~~las~--~~d~~i~ 84 (612)
.-..+.|+|+|++|++-.. +...+|.++ .+.....+. ...++|.+++|+|+|+.+|.. ..++.|.
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 3457899999999977642 234455542 122333333 245679999999999987654 4677999
Q ss_pred EeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEE
Q 007229 85 IWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 164 (612)
+||++ ++ . ....+...+..+.|+|+|++|+.++.++....+.+|+.++.+.+..... ..++.++|+|+|++ ++
T Consensus 87 lyd~~-~~-~--i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~-~~ 159 (194)
T PF08662_consen 87 LYDVK-GK-K--IFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRY-LA 159 (194)
T ss_pred EEcCc-cc-E--eEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCE-EE
Confidence 99997 33 2 2333467888999999999999998665333467777777777766653 34789999999997 55
Q ss_pred Eee------cCCeEEEEeCCCCeeee
Q 007229 165 TCG------EDFLVNFYEGPPFKFKL 184 (612)
Q Consensus 165 ~~~------~d~~i~~wd~~~~~~~~ 184 (612)
++. .|..++||+.. |+.+.
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeE
Confidence 554 37889999975 44443
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.61 E-value=2.9e-13 Score=113.13 Aligned_cols=359 Identities=13% Similarity=0.119 Sum_probs=230.3
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe-CCCCeeeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE-GPPFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd-~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
.++.++||.+.+++...-|..+ -+++.+.|.++++|- ...++.-..+. ....+++++.+.++...|+.|-..|++.-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 4566789999999999999888 499999999999995 33343333322 24567899999999999999999999998
Q ss_pred EecCCCCee-eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 217 YDGKSGEKI-GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 217 wd~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+.+...-.. ........|...+..+-|+....++++.+.|..+.---. +.+..+..+.... ...+..++
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~----e~~~~lg~Y~~~~------~~t~~~~d 164 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT----ESGNRLGGYNFET------PASALQFD 164 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEee----ccCCcccceEeec------cCCCCcee
Confidence 876532211 111112478999999999999999999999987654444 4444444433322 11112222
Q ss_pred CCEEEEEEcCCEEEEEEcCCC-CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-ecccce
Q 007229 296 NDHLITVSLGGIISIFSASNL-DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-KYDARI 373 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~i 373 (612)
-...+.|...|.+....+... -.++..+.+|.+.+.++.|.+. ...+.+|..|..+.+||+...+-..... .|...|
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 226677778888887776544 4566788999999999999832 7889999999999999998776655433 388888
Q ss_pred EEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee-----cccce--
Q 007229 374 KCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD-----SLKVM-- 444 (612)
Q Consensus 374 ~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-- 444 (612)
..+.. .-..+++++.||.|.+|+.+..............-..+ +.-..|+ ..+.+
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c----------------~qpffwn~~~m~~~k~~gl 307 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKC----------------NQPFFWNFRQMWDRKQLGL 307 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhh----------------CchHHHHHHHHHhhhhhhh
Confidence 88887 67889999999999999987655432222111100000 0000000 00000
Q ss_pred --eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccC-----cccccceeeccccCceEEEEEcCCCcEEEEEcCCCe
Q 007229 445 --SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG-----NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNRE 517 (612)
Q Consensus 445 --~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 517 (612)
.....-+...+..-+.......+.+..=.+++.|.-. ....+...+..-...|+++.+...-.+|++++.|+.
T Consensus 308 r~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rv 387 (404)
T KOG1409|consen 308 RQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRV 387 (404)
T ss_pred hhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceE
Confidence 0000111111222222222222222233455544321 111223444444457999999998899999999999
Q ss_pred EEEEecCC
Q 007229 518 AIVWDRVS 525 (612)
Q Consensus 518 i~iwd~~~ 525 (612)
|+|||+..
T Consensus 388 i~iwd~~~ 395 (404)
T KOG1409|consen 388 IKIWDVRS 395 (404)
T ss_pred EEEEechh
Confidence 99999864
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.2e-11 Score=103.57 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=131.2
Q ss_pred cCeEEEeecCCCce--eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC--Cce--eeeeccCCceEEEE
Q 007229 80 SGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS--GTT--VGDFDGHSRRVLSC 153 (612)
Q Consensus 80 d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~--~~~--~~~~~~~~~~v~~~ 153 (612)
+.-|.+|++.+... -...+....+.++-++|+|++++|.++...+....+..+.|+. |+. +........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56699999984432 2224445677899999999999999988774444577888884 432 22223333445889
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCC-Ceeeec--ccccccc----------eEEEEECCCCCeEEEEEc-CCcEEEEec
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLS--HREHSNF----------VNCIRFSPDGSKLISVSS-DRKGLIYDG 219 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~--~~~~~~~----------v~~~~~s~~~~~l~~~~~-dg~i~vwd~ 219 (612)
++++++++++.+-...|.|.++-++. |.+... ...|.+. +....+.|++++|++..- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999997666666679999998865 333222 2234444 888999999999988754 235999999
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEe
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEI 264 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~ 264 (612)
..|+....-...-........|.|+|++++.....+ +++|.+|..
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 987765433222245667889999999998877665 789999998
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.61 E-value=1.8e-11 Score=108.86 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=168.7
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCeeeeeeccCC-c---c
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKIGEFSSEDG-H---H 235 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~-~---~ 235 (612)
+.|.+.|..+++.+..+..-..+- .+ ++||++.|+++.. +..|.+||..+.+.+.++..... + .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999999888776433322 34 9999998887765 78899999999999998853211 1 2
Q ss_pred ccEEEEEEecCCCEEEEEe-C-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 236 GSIYAVSWSPDGKKVLTVS-A-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
.....++++|||+++++.. . +..|.+.|+ .+++.+..+..... ..++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~----~~~kvv~ei~vp~~--------------~~vy~t----------- 155 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL----EGKAFVRMMDVPDC--------------YHIFPT----------- 155 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEEC----CCCcEEEEEeCCCC--------------cEEEEe-----------
Confidence 2344789999999998776 3 689999999 88888887765320 000000
Q ss_pred CCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEE
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVW 393 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~ 393 (612)
. +..+..-+.||......+......... ...
T Consensus 156 -----------------------~--e~~~~~~~~Dg~~~~v~~d~~g~~~~~------------------------~~~ 186 (352)
T TIGR02658 156 -----------------------A--NDTFFMHCRDGSLAKVGYGTKGNPKIK------------------------PTE 186 (352)
T ss_pred -----------------------c--CCccEEEeecCceEEEEecCCCceEEe------------------------eee
Confidence 0 111111222333222211110000000 000
Q ss_pred EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCC
Q 007229 394 RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNG 472 (612)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg 472 (612)
+++.... ..+ ..+ .|++ +|+++.+..+ |
T Consensus 187 vf~~~~~--------------------------------------------~v~--~rP----~~~~~dg~~~~vs~e-G 215 (352)
T TIGR02658 187 VFHPEDE--------------------------------------------YLI--NHP----AYSNKSGRLVWPTYT-G 215 (352)
T ss_pred eecCCcc--------------------------------------------ccc--cCC----ceEcCCCcEEEEecC-C
Confidence 0000000 000 011 3455 8888888777 9
Q ss_pred eEEEEEccCcccccceee---c-------cccCceEEEEEcCCCcEEEEEc----------CCCeEEEEecCCcceeeec
Q 007229 473 KLHIYSISGNTLTEEMVL---E-------KHRGAITVIQYSPDVSMFASAD----------GNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~---~-------~~~~~i~~~~~s~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~ 532 (612)
.|++.|+.+........+ . -..+.+.-++++|+++.+.... ..+.|.++|..+++.+...
T Consensus 216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i 295 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI 295 (352)
T ss_pred eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence 999999754432111111 1 0223344599999999888742 2257999999999988554
Q ss_pred ccccccceeEEEecCCCc-EEEEee-cCcEEEEEEccCCCcceeeee
Q 007229 533 MLFHTARINCLAWSPSST-MVATGS-IDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~~~ 577 (612)
.. ...+..++++||++ +|.+.. .++.|.+.|..+ + +.+...
T Consensus 296 ~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~-k~i~~i 338 (352)
T TIGR02658 296 EL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-G-KELSSV 338 (352)
T ss_pred eC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-C-eEEeee
Confidence 44 45789999999999 777665 678899999988 4 455444
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=6.8e-13 Score=126.13 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=139.0
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
.|.++|.+.... +.+..+...+.+..|||||+.||..+.+ ..|.+||+.+++.. .+....+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCE
Confidence 777888776544 4466678899999999999999876533 35889999887631 23333344557899999999
Q ss_pred EEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeecccccccce
Q 007229 117 IVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHSNFV 193 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~v 193 (612)
|+......+. ..||.++ .+.....+..+.......+|+||+++++++...++ .|.++|+.+++.... .......
T Consensus 276 La~~~~~~g~--~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~ 352 (448)
T PRK04792 276 LALVLSKDGQ--PEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQN 352 (448)
T ss_pred EEEEEeCCCC--eEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCC
Confidence 9876544332 3455555 23334556666666778899999997666655554 466667777664332 1122223
Q ss_pred EEEEECCCCCeEEEEEcC-C--cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-Cc--EEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSD-R--KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KS--AKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~--i~iw~~ 264 (612)
...+|+|||++|+..+.+ + .|.++|+.+++... +. .. .......|+|||+.++..+.+ |. +.+++.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt---~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT---ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 456899999998876653 3 45667887776532 31 11 112245799999988776654 33 455554
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=7.6e-12 Score=111.68 Aligned_cols=327 Identities=16% Similarity=0.189 Sum_probs=193.5
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-----------CCcEEE
Q 007229 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-----------DKSAKV 261 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----------dg~i~i 261 (612)
=+-+.|||-|.||++-...| |.+|--++-..++.+ .|. .|.-+.|||+.+||++-+. ...+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF----~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF----YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc----cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 45689999999999987655 999988877778877 565 4889999999999998653 257999
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
||+ .+|...+.|.........-+++.-..++.+++.-.. +.|.+|+.... .++..-.-....|....|++. +.
T Consensus 287 WDI----~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf-~lld~Kslki~gIr~FswsP~-~~ 359 (698)
T KOG2314|consen 287 WDI----ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF-MLLDKKSLKISGIRDFSWSPT-SN 359 (698)
T ss_pred EEc----cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce-eeecccccCCccccCcccCCC-cc
Confidence 999 999999999876443333334333344555554444 78888885542 111112223345566666652 23
Q ss_pred EEEEEec-----CCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCc
Q 007229 342 TILSSSY-----DGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQP 414 (612)
Q Consensus 342 ~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 414 (612)
+|+--.. --.+.+..+.+.+.++....++..=..+.+ ++++|..-- -.....
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv-------dR~tK~-------------- 418 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV-------DRHTKS-------------- 418 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE-------Eeeccc--------------
Confidence 3322111 112333333333333322212211122222 233322110 000000
Q ss_pred ceeeecCCCCcEEEEEeeccEEEee---cccceeeecccceEEEEEEccCCCeEEEEecC---CeEEEEEccCc--cccc
Q 007229 415 LDLSLALSSPELALVSTESGVILLD---SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN---GKLHIYSISGN--TLTE 486 (612)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~--~~~~ 486 (612)
. +.+.-..+.++. ..-++...+.+..+...+|-|.|..+++-+.+ .++.+|.+++. +...
T Consensus 419 ----------~--~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 419 ----------K--VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred ----------c--ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 0 000000111111 22344555677789999999999888775533 47899988742 2222
Q ss_pred ceeeccccCceEEEEEcCCCcEEEEE---cCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec------
Q 007229 487 EMVLEKHRGAITVIQYSPDVSMFASA---DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI------ 557 (612)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------ 557 (612)
+..+.. ...+.+.|+|.|++++.+ +..|.+.++|+............| ...+.+.|.|.|+|+++++.
T Consensus 487 Vk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 487 VKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred hhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcc
Confidence 333333 567889999999998876 456889999998644332222223 34678999999999999874
Q ss_pred CcEEEEEEccC
Q 007229 558 DTCVIIYEIGK 568 (612)
Q Consensus 558 d~~i~iwd~~~ 568 (612)
|.--+||++..
T Consensus 564 d~GYri~tfqG 574 (698)
T KOG2314|consen 564 DNGYRIFTFQG 574 (698)
T ss_pred ccceEEEEeec
Confidence 45577888765
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=2e-13 Score=114.01 Aligned_cols=297 Identities=13% Similarity=0.128 Sum_probs=179.5
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCC-CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS-GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
...-|.++.|...|.+|++|..+|.|.++.-..... .......++.+.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe------------------------------- 72 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE------------------------------- 72 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccC-------------------------------
Confidence 345688999999999999999999999997521111 000111121111
Q ss_pred cCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 313 ASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
++.-...--.-...|..+.|. +.+...++..+.|.+|++|.+.........
T Consensus 73 ---pEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~------------------------- 124 (433)
T KOG1354|consen 73 ---PEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEG------------------------- 124 (433)
T ss_pred ---cccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccccc-------------------------
Confidence 000000111234567888888 555678888889999999987654332200
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 471 (612)
|++.... ....+..+ ++.+...-+... ....+.+..-.|...|.++.++.|+..++++. |
T Consensus 125 ---~~~~~~~--------~~~~~~~l-------r~p~~~~~~~~v-ea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-d 184 (433)
T KOG1354|consen 125 ---YNLPEEG--------PPGTITSL-------RLPVEGRHDLEV-EASPRRVYANAHTYHINSISVNSDKETFLSAD-D 184 (433)
T ss_pred ---ccccccC--------CCCcccee-------eceeecccccee-eeeeeeeccccceeEeeeeeecCccceEeecc-c
Confidence 0000000 00000000 000000000000 00112222333778899999999999888754 5
Q ss_pred CeEEEEEccCccc-ccceeec-----cccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCccee------eec------
Q 007229 472 GKLHIYSISGNTL-TEEMVLE-----KHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSKEVK------LNN------ 532 (612)
Q Consensus 472 g~v~i~d~~~~~~-~~~~~~~-----~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~------~~~------ 532 (612)
=.|.+|+++--.. ..+..++ .-..-|++..|+| ....++..+..|+|++-|++...+. .+.
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 6799998863221 0111222 2235699999999 5678888889999999999854321 110
Q ss_pred ---ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc------------C---eeeEEEe-cCc
Q 007229 533 ---MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG------------G---VYGVAFM-DDF 593 (612)
Q Consensus 533 ---~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~------------~---v~~~~~~-~~~ 593 (612)
+..--..|..+.|+++|+++++-+. -+|++||+.... +++.+..-|.. . -..++|+ ++.
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~-~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA-KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC-CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 1112246888999999999998755 469999997745 66666665543 2 2467889 888
Q ss_pred eEEEccCCCeEEEEEecc
Q 007229 594 NVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 594 ~l~s~~~d~~i~~w~~~~ 611 (612)
+++||+....++++++..
T Consensus 343 ~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eEecccccceEEEecCCC
Confidence 999999999999999654
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=9.2e-13 Score=126.23 Aligned_cols=213 Identities=15% Similarity=0.131 Sum_probs=142.0
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
.|.++|.+.+.. +.+..+...+...+|||||+.||..+.+ ..|.+||+.+++. ..+....+.+...+|+|||++
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 588889886554 4466678889999999999999876543 3699999998863 233444455667999999999
Q ss_pred EEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeecccccccc
Q 007229 117 IVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHSNF 192 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~ 192 (612)
|+......+. ..||.++ +++ ...+..+........|+|+++.++++...++ .|.++++.+++..... .....
T Consensus 257 la~~~~~~g~--~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~ 332 (430)
T PRK00178 257 LAFVLSKDGN--PEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNY 332 (430)
T ss_pred EEEEEccCCC--ceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCC
Confidence 9865543332 2455555 443 4456666666777899999997555554444 5777788777643322 11223
Q ss_pred eEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-Cc--EEEEEe
Q 007229 193 VNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KS--AKVWEI 264 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~--i~iw~~ 264 (612)
.....|+|||++|+....++ .|.+||+.+++... +. .........|+|||+.++..+.+ |. +.++++
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt----~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT----DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc----CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 34578999999998776532 48889998876533 31 11122356899999998877654 33 444454
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=4.9e-13 Score=128.36 Aligned_cols=200 Identities=15% Similarity=0.187 Sum_probs=137.9
Q ss_pred CceeEEEEccCCCEEEEec-C---CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcC--eEEEeecCCC
Q 007229 19 GRGILISGNPKTDTILYCN-G---RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSG--SVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~--~i~iwd~~~~ 91 (612)
..+...+|||||++|++.. + ..|++||+.+++... +..+.+.+.+++|+|||+.|+. .+.++ .|.+||+.++
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence 3577889999999999986 2 489999999886654 4456677788999999997764 44444 5888999887
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. . ..+..+........|+|||++|+..+...+. ..||.++ +++ ...+..+...+....|+|++++ ++..+.+
T Consensus 269 ~-~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~--~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~-i~~~~~~ 342 (417)
T TIGR02800 269 Q-L-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGS--PQIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDL-IAFVHRE 342 (417)
T ss_pred C-E-EECCCCCCCCCCEEECCCCCEEEEEECCCCC--ceEEEEECCCCC-EEEeecCCCCccCeEECCCCCE-EEEEEcc
Confidence 5 2 2344455555678999999999888765433 2455555 333 4455556667788899999996 5555555
Q ss_pred C---eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeee
Q 007229 170 F---LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEF 228 (612)
Q Consensus 170 ~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~ 228 (612)
+ .|.+||+.++.... +... .......|+|||++|+..+.++ .+.+.+. ++.....+
T Consensus 343 ~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 343 GGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred CCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 4 78899988765432 2222 2245568999999988877754 3455553 34444444
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=9.2e-11 Score=99.82 Aligned_cols=275 Identities=15% Similarity=0.132 Sum_probs=179.9
Q ss_pred CCEEEEEeCCCC--ce-eeEeccCCCceEEEEECCCCCEEEEeeC---cCeEEEeecCC--Cce-eeeeeeecCCCeEEE
Q 007229 38 GRSVLIRYLDKP--LH-VEFYGEHGYPVTVARYSPNGEWIASADV---SGSVRIWGTHN--GFV-LKNEFKVLSGRIDDL 108 (612)
Q Consensus 38 ~~~i~i~~~~~~--~~-~~~~~~h~~~v~~~~~s~d~~~las~~~---d~~i~iwd~~~--~~~-~~~~~~~~~~~i~~~ 108 (612)
+..|++|++++. +. ...+..+.+.++-++|+|+++.|.++-. +|.|.-|.+.. ++. +.........+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 578999998832 21 1224457888999999999999988754 57788888775 442 111222223345899
Q ss_pred EECCCCCEEEEEeCCCCeeeEEEEEecC-Cceee--eeccCCce----------EEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 109 QWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVG--DFDGHSRR----------VLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 109 ~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
+++++|++|+++.-..+ .+.++-.+. |.... .+..|.+. +....|.|++++++++.-.--.|.+|
T Consensus 95 svd~~g~~vf~AnY~~g--~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSG--SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCc--eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 99999999999987765 367776653 33222 22334444 78899999999755555444579999
Q ss_pred eCCCCeeeeccc---ccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCC-Ceeeeee---c-cC--CccccEEEEEEe
Q 007229 176 EGPPFKFKLSHR---EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSG-EKIGEFS---S-ED--GHHGSIYAVSWS 244 (612)
Q Consensus 176 d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~-~~~~~~~---~-~~--~~~~~v~~i~~~ 244 (612)
++..+++...-. ......+.|.|+|++++.+..++ +++|.+|..... ..+..+. . +. .......+|..+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 999877654311 34456889999999998887776 899999998773 2222221 1 11 233456788999
Q ss_pred cCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC-CEEEEEEcCCCC
Q 007229 245 PDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG-GIISIFSASNLD 317 (612)
Q Consensus 245 ~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 317 (612)
+||++|.++.. ...|.+|.++..+ ..+.............+-+.+...++.|+++..+ ..+.+|......
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~---g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDG---GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCC---CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 99999887754 2478888885322 2233333332223334455556667777777664 568888765543
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-12 Score=109.54 Aligned_cols=117 Identities=15% Similarity=0.281 Sum_probs=83.6
Q ss_pred ceEEEEEEccC-CCeEEEEecCCeEEEEEccCccccc--cee------------eccccCceEEEEEcCCCcEEEEEcCC
Q 007229 451 FTVTACAIAPD-GSEAIVGGQNGKLHIYSISGNTLTE--EMV------------LEKHRGAITVIQYSPDVSMFASADGN 515 (612)
Q Consensus 451 ~~i~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~~--~~~------------~~~~~~~i~~~~~s~~~~~l~~~~~d 515 (612)
.-|++..|+|. ...++..+..|+|++.|++...+-- ... +.+--..|..+.|+++|+++++-+.
T Consensus 214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy- 292 (433)
T KOG1354|consen 214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY- 292 (433)
T ss_pred HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-
Confidence 34788889994 4677888899999999998543200 000 1112246889999999999998765
Q ss_pred CeEEEEecCCcceeeecccccc------------cc---eeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 516 REAIVWDRVSKEVKLNNMLFHT------------AR---INCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 516 ~~i~iwd~~~~~~~~~~~~~~~------------~~---i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
-+|++||+...........-|. .. -..++|+-++.+++||+....+++++...
T Consensus 293 ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 293 LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 5899999955443334444343 11 23578999999999999999999999665
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=8.2e-11 Score=108.66 Aligned_cols=451 Identities=12% Similarity=0.086 Sum_probs=269.9
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
......|++|+....|+|.|+.||.++|-.+.+...-. +.+-|+..+.-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-----------------~~~glaa~snL-------------- 61 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-----------------NKSGLAAASNL-------------- 61 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcc-----------------ccccccccccc--------------
Confidence 34567899999999999999999999998887654100 00113322221
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc--ccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
..-+++.||...|.-+.|+.+.+ .|-+...+|.|.+|-+-.+.....+. ....-|.+|+|+.||..+...-.||.|.
T Consensus 62 smNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred chhhhhccCcceEEEEEeccccc-cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 12346889999999999999988 59999999999999987776555433 2446789999999999999999999998
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC---eeEeeeeccCccccceeeeee
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG---RVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 292 (612)
+=.++..+....- -.......+.|++|.+.++.+-..|.+.++|...+.... .+.-......+ .....+...
T Consensus 141 VGsvdGNRIwgKe----Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s-~~~~kia~i 215 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKE----LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS-NFPTKIAEI 215 (1189)
T ss_pred EEeeccceecchh----cchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec-CCCccccce
Confidence 8776544333222 122334578899999988888889999999973211110 01000000000 000011122
Q ss_pred e----------ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCC---------cEE
Q 007229 293 L----------WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG---------AII 353 (612)
Q Consensus 293 ~----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~ 353 (612)
. .+...++++..+|.+.+..-.+...+...-.+ -.+....|++. +..++.++.+. .|.
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~-G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHN-GAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCC-CcEEEEccCcccccCccccceEE
Confidence 2 23567889999999988875555554443333 45666777721 77777776542 344
Q ss_pred EEEcCCceeeeeceecccceEEEEeec-cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe-
Q 007229 354 KWIRGVGYSSKLEKKYDARIKCLAAVE-EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST- 431 (612)
Q Consensus 354 ~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 431 (612)
+|.. -+.....+......|+++++.+ ..-+.-..|+.|.+-+++..-.- ..-...++.+..
T Consensus 293 Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykW----------------gy~e~TvVy~y~~ 355 (1189)
T KOG2041|consen 293 FYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKW----------------GYIEETVVYVYQK 355 (1189)
T ss_pred Eecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccceE----------------EEeeeEEEEEEcc
Confidence 4432 3344444444778889999944 44445566777777666532210 000001111111
Q ss_pred ----eccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEc-cCcccccceee--------ccccCceE
Q 007229 432 ----ESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVL--------EKHRGAIT 498 (612)
Q Consensus 432 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~-~~~~~~~~~~~--------~~~~~~i~ 498 (612)
.-++..|++.........-.+..+++++.+.-.|+.-..+|.+.-++. ++........+ ...-..|.
T Consensus 356 ~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdir 435 (1189)
T KOG2041|consen 356 EELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIR 435 (1189)
T ss_pred CCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceee
Confidence 123555664444444444445677888877777777777776665532 11111000001 00001122
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCccee-------------------------------eecccccccceeEEEecC
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKEVK-------------------------------LNNMLFHTARINCLAWSP 547 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------------~~~~~~~~~~i~~~~~s~ 547 (612)
-.-..-++.+++.++.+ .+.+|.....+.. .+++.+...+|.+++.+
T Consensus 436 P~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s- 513 (1189)
T KOG2041|consen 436 PKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS- 513 (1189)
T ss_pred eeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec-
Confidence 11122366677778776 5788865432211 12233455678778775
Q ss_pred CCcEEEEeecCcEEEEEEccC
Q 007229 548 SSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 548 ~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.++|..+-..|.|+-|.+.+
T Consensus 514 -dk~l~vareSG~I~rySl~n 533 (1189)
T KOG2041|consen 514 -DKFLMVARESGGIYRYSLNN 533 (1189)
T ss_pred -ceEEEEEeccCceEEEEecc
Confidence 46888898999999999887
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.53 E-value=4.7e-11 Score=112.49 Aligned_cols=300 Identities=12% Similarity=0.064 Sum_probs=184.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
.++.++.++.+..+|..+|+.+....-.......... ++..++.++.++.+..+|.++|+.+.... ....+.+.
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~----~~~~~~~~ 140 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAK----LSSEVLSP 140 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeec----cCceeecC
Confidence 5888888999999999999988765433321222222 46678888999999999999999887763 22222221
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 242 SWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
-.. .+..++.++.+|.+..||. .+++.+-.+..................++.++.+..++.+..+|.........
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~----~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDA----ATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEc----CCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeee
Confidence 111 2446777778999999999 88887776654332110000011122246788888889999999766543322
Q ss_pred eecCccc---------ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 322 SFSGHVK---------NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 322 ~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
.-..... .+..-.... +..++.++.+|.+..+|..+++...... . .........++.++.++.+|.+
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~-~~~~~p~~~~~~vyv~~~~G~l 291 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSGRVLWKRD-A-SSYQGPAVDDNRLYVTDADGVV 291 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCCEEEEEECCCCcEEEeec-c-CCccCceEeCCEEEEECCCCeE
Confidence 1100000 010001112 5678888889999999999887654332 1 1223344577888888999999
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG 472 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 472 (612)
..+|..+++.. |.... +. .....+..+ .+..+++++.+|
T Consensus 292 ~~~d~~tG~~~----------------------------------W~~~~----~~-~~~~ssp~i--~g~~l~~~~~~G 330 (377)
T TIGR03300 292 VALDRRSGSEL----------------------------------WKNDE----LK-YRQLTAPAV--VGGYLVVGDFEG 330 (377)
T ss_pred EEEECCCCcEE----------------------------------Ecccc----cc-CCccccCEE--ECCEEEEEeCCC
Confidence 99998776532 10000 00 000111112 356888999999
Q ss_pred eEEEEEccCcccccceeeccccCceE-EEEEcCCCcEEEEEcCCCeEEEE
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAIT-VIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
.|+++|..+++. ...++.+...+. ...+ .++ .|+.++.||.|+.+
T Consensus 331 ~l~~~d~~tG~~--~~~~~~~~~~~~~sp~~-~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 331 YLHWLSREDGSF--VARLKTDGSGIASPPVV-VGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEECCCCCE--EEEEEcCCCccccCCEE-ECC-EEEEEeCCceEEEe
Confidence 999999999887 444444443332 2222 233 57788889988765
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.2e-11 Score=111.60 Aligned_cols=205 Identities=23% Similarity=0.357 Sum_probs=155.3
Q ss_pred CCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec---CCCeEEEEE------CC-------------CCCEEEEEeCCCC
Q 007229 68 SPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL---SGRIDDLQW------SP-------------DGLRIVACGDGKG 125 (612)
Q Consensus 68 s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~------s~-------------~~~~l~~~~~~~~ 125 (612)
.|-+.|+|....||.+++||...++ +.+.+... .+.-.+..| +| .++.+++-|...+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 3556799999999999999999887 44444422 223333333 22 2334444444443
Q ss_pred eeeEEEEEecCCceeeeec--cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC
Q 007229 126 KSFVRAFMWDSGTTVGDFD--GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS 203 (612)
Q Consensus 126 ~~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 203 (612)
. +.++....++....+. .|.+.|.++.++.+-. .+.+++.|+.+..|+......+...+.-...+.+++.+|||.
T Consensus 81 ~--v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 81 S--VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred c--EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 2 4444455777777765 6999999999999887 699999999999999999999999998899999999999999
Q ss_pred eEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-----CCEEEEEe-CCCcEEEEEeecCCCCCeeEeee
Q 007229 204 KLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-----GKKVLTVS-ADKSAKVWEILEDGSGGRVIKTF 277 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~ 277 (612)
.|++++ ++|++||+++++.+..| .+|.++|.++.|..+ |.+++++. .+..+.+|-.......+.....+
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~f---tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl 232 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITF---TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSL 232 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEe---cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheee
Confidence 999887 78999999999999999 499999999999887 67766653 45668888885544555555555
Q ss_pred eccC
Q 007229 278 ASST 281 (612)
Q Consensus 278 ~~~~ 281 (612)
....
T Consensus 233 ~~~d 236 (541)
T KOG4547|consen 233 TVPD 236 (541)
T ss_pred ccCC
Confidence 5443
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=4.1e-10 Score=100.38 Aligned_cols=260 Identities=10% Similarity=0.051 Sum_probs=159.2
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC----------cCeEEEeecCCCceeeeeeeec-------
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV----------SGSVRIWGTHNGFVLKNEFKVL------- 101 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~------- 101 (612)
++|.+.|.++.+.+..+..-..+- .+ +||||+.|..+.. +..|.+||..+.+.+. .+..-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhhc
Confidence 799999999999888776433332 24 9999998887654 7899999999998543 33321
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEE--------EEcCCCCEEEEEeecCCeEE
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSC--------EFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~l~~~~~d~~i~ 173 (612)
......++++|||++|++...+... .+.+.+..+++.+..+.-.. ...-. ..+.|+..+-++-..+|...
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~-~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSP-AVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCC-EEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence 1234588999999999987755222 57788888888888776422 11111 22233332222222333211
Q ss_pred EEeCCCCeeeecccc-----cccceEEEEECC-CCCeEEEEEcCCcEEEEecCCC-----Ceeeeeecc----CCccccE
Q 007229 174 FYEGPPFKFKLSHRE-----HSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSG-----EKIGEFSSE----DGHHGSI 238 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~----~~~~~~v 238 (612)
.=.. ..+.+ ...+ .|++ +|++++...+ |+|.+.|+... +....+... .-..+.+
T Consensus 182 ~~~~------~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 182 IKPT------EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred Eeee------eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 0000 00111 0112 3455 8887776665 99999996443 222222111 0123344
Q ss_pred EEEEEecCCCEEEEEeC----------CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 239 YAVSWSPDGKKVLTVSA----------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
.-++++++++.+++... .+.|.++|. .+++.+..+...
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi~~i~vG---------------------------- 298 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRLRKIELG---------------------------- 298 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEEEEEeCC----------------------------
Confidence 55999999998887431 246888888 777777665533
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCc-EEEEEe-cCCcEEEEEcCCceeeeec
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ-TILSSS-YDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~ 366 (612)
..+..+++++. ++ .+++.. .++.|.++|..+.+.....
T Consensus 299 -------------------~~~~~iavS~D-gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 299 -------------------HEIDSINVSQD-AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -------------------CceeeEEECCC-CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 25667777743 44 555544 6788999999888776654
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.3e-12 Score=117.79 Aligned_cols=148 Identities=19% Similarity=0.278 Sum_probs=127.1
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccc
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTA 538 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 538 (612)
+.|...++-|...|.|.+|++..+++.....-..|.++|+++.++.+-..|.+++.|+.+..|+....... ..+.....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-~~~~~~~~ 145 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-RIWKEQKP 145 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee-eeeccCCC
Confidence 34556788899999999999999998655556789999999999999999999999999999999998876 45666777
Q ss_pred ceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-c-----CceEEE-ccCCCeEEEEEecc
Q 007229 539 RINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-D-----DFNVVS-SGEDACIRVWRLAT 611 (612)
Q Consensus 539 ~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~-----~~~l~s-~~~d~~i~~w~~~~ 611 (612)
.+.+++.+|||..|++++ ++|++||+++ . +.+..+.+|.++|..+.|. + |.++++ ...+.-+.+|-++.
T Consensus 146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~-k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS--RQIKVLDIET-K-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceEEEcCCCCEEEecc--ceEEEEEccC-c-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 899999999999999986 5799999999 7 8899999999999999998 6 566555 45667788888764
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.49 E-value=2.2e-10 Score=108.04 Aligned_cols=306 Identities=10% Similarity=0.094 Sum_probs=179.3
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
+..+++++.++.+..+|..+|+.+.......... .... .++..+++++.+|.+..+|. .+++.+-......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~--v~~~~v~v~~~~g~l~ald~----~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVG--ADGGLVFVGTEKGEVIALDA----EDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceE--EcCCEEEEEcCCCEEEEEEC----CCCcEeeeeccCc
Confidence 5678888889999999999999887763221111 1222 24667888888999999998 7777765443221
Q ss_pred ccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 282 SNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.+.+..... +..++.++.+|.+..+|..+++
T Consensus 136 -----------------------------------------------~~~~~p~v~--~~~v~v~~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 136 -----------------------------------------------EVLSPPLVA--NGLVVVRTNDGRLTALDAATGE 166 (377)
T ss_pred -----------------------------------------------eeecCCEEE--CCEEEEECCCCeEEEEEcCCCc
Confidence 000000011 4456666677788888877766
Q ss_pred eeeeceecccce-----EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEE
Q 007229 362 SSKLEKKYDARI-----KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436 (612)
Q Consensus 362 ~~~~~~~~~~~i-----~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (612)
............ ......++.++.+..++.+..+|..++...............
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~--------------------- 225 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT--------------------- 225 (377)
T ss_pred eeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC---------------------
Confidence 544332111110 111224457777888888888888776533111000000000
Q ss_pred EeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC
Q 007229 437 LLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR 516 (612)
Q Consensus 437 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 516 (612)
...... ....+..+ .+..+++++.+|.++.||..+++..-..... ...... .++..+..++.||
T Consensus 226 ------~~~~~~--~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 226 ------ELERLV--DVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred ------chhhhh--ccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC----CccCce--EeCCEEEEECCCC
Confidence 000000 00000111 2457777888999999999988753222111 112222 2456788888999
Q ss_pred eEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCe-eeEEEecCceE
Q 007229 517 EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGV-YGVAFMDDFNV 595 (612)
Q Consensus 517 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~l 595 (612)
.+..+|..+++.+.+..........+... .+..|++++.+|.++++|..+ + +.+..+..+...+ .+..+. ++.|
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-G-~~~~~~~~~~~~~~~sp~~~-~~~l 364 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED-G-SFVARLKTDGSGIASPPVVV-GDGL 364 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC-C-CEEEEEEcCCCccccCCEEE-CCEE
Confidence 99999999998765431111112222222 466888999999999999988 6 6666666555443 333343 4568
Q ss_pred EEccCCCeEEEE
Q 007229 596 VSSGEDACIRVW 607 (612)
Q Consensus 596 ~s~~~d~~i~~w 607 (612)
+.++.||.|..+
T Consensus 365 ~v~~~dG~l~~~ 376 (377)
T TIGR03300 365 LVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCceEEEe
Confidence 889999998876
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=3.1e-11 Score=99.00 Aligned_cols=245 Identities=14% Similarity=0.167 Sum_probs=163.3
Q ss_pred CEEEEEeCCCCceee---EeccCCCceEEEEECC---CCC-EEEEeeCcCeEEEeecCCCceeeeeeeecC---C---Ce
Q 007229 39 RSVLIRYLDKPLHVE---FYGEHGYPVTVARYSP---NGE-WIASADVSGSVRIWGTHNGFVLKNEFKVLS---G---RI 105 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~---~~~~h~~~v~~~~~s~---d~~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~---~---~i 105 (612)
|.+.+|+++..+... ........+..+.|+- +|. .|+-+..+|.|.++........ ..+.+-. - .-
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss-~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS-VHLRGLSSKKISVVEA 124 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee-eeecccchhhhhheee
Confidence 578888887654433 1112334556666664 555 5667778899999987765431 1222211 1 24
Q ss_pred EEEEECCCCCEEEEEeCCCCeeeEEEEEecCC--ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC-CCee
Q 007229 106 DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG--TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PFKF 182 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~ 182 (612)
.++.|++.+..+++.-.++. +.+...... +.++..+.|.-+...+.|+...+.++.+|+.|+.+..||++ .++.
T Consensus 125 lslD~~~~~~~i~vs~s~G~---~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGS---ISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCc---EEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 57789999998887766663 232233322 34457899999999999999888899999999999999998 5555
Q ss_pred eec-ccccccceEEEEECC-CCCeEEEEEcCCcEEEEecC-CCCeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCc
Q 007229 183 KLS-HREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKS 258 (612)
Q Consensus 183 ~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~ 258 (612)
+.. .+-|...|.++.-+| .+.++++|+.|-.|++||.+ -++++..- .-.+.|..+..+|.-. .++.++.-.-
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcC
Confidence 555 567889999998886 57799999999999999998 46666655 5568999999999432 2333344445
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
.++-+..+.... ...............++..|+
T Consensus 278 ~ki~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd 310 (339)
T KOG0280|consen 278 AKILDSSDKVLE----FQIVLPSDKIHDSLCYGGDWD 310 (339)
T ss_pred ceEEEecccccc----hheeeeccccccceeeccccc
Confidence 777777332221 222222223344556666664
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=8.6e-11 Score=109.90 Aligned_cols=194 Identities=14% Similarity=0.100 Sum_probs=127.7
Q ss_pred ceeEEEEccCCCE-EEEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eC--cCeEEEeecCCC
Q 007229 20 RGILISGNPKTDT-ILYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DV--SGSVRIWGTHNG 91 (612)
Q Consensus 20 ~v~~~~~s~d~~~-l~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~--d~~i~iwd~~~~ 91 (612)
......|||||+. +++.+ ...|+++|+.+++..... ...+......|||||+.|+.. +. +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4568999999995 66644 258999999998776643 456667788999999877654 33 356888888777
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC--
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-- 169 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 169 (612)
+ .. .+..+........|+|||+.|+..++..+...+.+.+.++++..+... .... ...|+|+|++++++....
T Consensus 268 ~-~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 268 T-LT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred c-EE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCc
Confidence 5 32 444444434566899999999998876554334444444555433322 1111 248999999766665543
Q ss_pred ------CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC---cEEEEecCC
Q 007229 170 ------FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR---KGLIYDGKS 221 (612)
Q Consensus 170 ------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~ 221 (612)
..|.+.|+.++.... +... .......|+|||+.++....++ .+.+.++..
T Consensus 343 ~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 368888988876543 3322 2233588999999887766532 355666643
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=4.9e-11 Score=97.87 Aligned_cols=271 Identities=12% Similarity=0.072 Sum_probs=168.2
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEec---CCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP---DGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
.|.+.+|++.+.+....-.........+..+.|.- +|. .++-+..+|.|.++.. ........++.-......
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~----~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRN----DEDESSVHLRGLSSKKIS 120 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEee----ccceeeeeecccchhhhh
Confidence 35677777766554441111123344566666653 444 4566667899999988 444444444443333332
Q ss_pred ee-eeeeecc--CCEEEEEEcCCEEEEEEcC-CCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce-
Q 007229 287 DM-LVGCLWQ--NDHLITVSLGGIISIFSAS-NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY- 361 (612)
Q Consensus 287 ~~-~~~~~~~--~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~- 361 (612)
.. ..++.|+ +..+++.-.+|.+.+.+.. ..-+..+..++|.-+.+...|+..+.+++++|+.|+.+..||++...
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 22 3444444 7778999999998854422 22334457889999999999996668999999999999999999433
Q ss_pred eeee-ceecccceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEE
Q 007229 362 SSKL-EKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVIL 437 (612)
Q Consensus 362 ~~~~-~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (612)
.... ...|...|.++.- .+.++++|+.|..|++||.++-..
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----------------------------------- 245 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----------------------------------- 245 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-----------------------------------
Confidence 3322 2338888988888 455999999999999999875332
Q ss_pred eecccceeeecccceEEEEEEccC--CCeEEEEecCCeEEEEEccCcccc---cceeeccccCceEEEEEcCCCcEEEEE
Q 007229 438 LDSLKVMSKIDLGFTVTACAIAPD--GSEAIVGGQNGKLHIYSISGNTLT---EEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 438 ~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
++..-...+.|..+..+|. ++.|++.-.+| .+|.+.+.+... .......|.+-...-.|..-..+||++
T Consensus 246 -----Pl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 246 -----PLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred -----ccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 1222223456888888883 33455444444 677777655443 223334455555555553334567775
Q ss_pred c-CCCeEE-EEecCCc
Q 007229 513 D-GNREAI-VWDRVSK 526 (612)
Q Consensus 513 ~-~d~~i~-iwd~~~~ 526 (612)
+ .|+.++ +|-..++
T Consensus 320 sFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 320 SFYDKKIRQLWLHITG 335 (339)
T ss_pred eccccceeeeeeeccC
Confidence 4 455544 6644333
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=5.9e-10 Score=104.35 Aligned_cols=211 Identities=9% Similarity=0.043 Sum_probs=135.7
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCE-EEEeeC---cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEW-IASADV---SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-las~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
..|.+-|.+......... .. .+....|||||+. ++..+. +..|.++|+.+++. ..+....+......|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 477777777655444333 33 7889999999985 664433 35699999988863 2344455667778999999
Q ss_pred CEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeecccccc
Q 007229 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHS 190 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~ 190 (612)
+.|+......+. -.+|.++ .++ ...+..+........|+|||+.++++....+ .|.+.|+.+++....... .
T Consensus 245 ~~la~~~~~~g~--~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g 320 (419)
T PRK04043 245 SKLLLTMAPKGQ--PDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G 320 (419)
T ss_pred CEEEEEEccCCC--cEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-C
Confidence 988876553332 3466655 443 4455545444455689999997666655444 577778887776443221 1
Q ss_pred cceEEEEECCCCCeEEEEEcC---------CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-CcEE
Q 007229 191 NFVNCIRFSPDGSKLISVSSD---------RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KSAK 260 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~ 260 (612)
. ....|+|||++|+..... ..|.+.|+++++.. .+. . ........|+|||+.++....+ +.-.
T Consensus 321 ~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT---~-~~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 321 K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT---A-NGVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC---C-CCCcCCeEECCCCCEEEEEEccCCcEE
Confidence 1 124899999998877654 26888898887653 331 1 1223357899999988776654 3333
Q ss_pred EEEe
Q 007229 261 VWEI 264 (612)
Q Consensus 261 iw~~ 264 (612)
++-+
T Consensus 394 L~~~ 397 (419)
T PRK04043 394 LGII 397 (419)
T ss_pred EEEE
Confidence 4443
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=1.2e-09 Score=114.12 Aligned_cols=242 Identities=10% Similarity=0.053 Sum_probs=155.9
Q ss_pred eEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEecc-C-------------CCceEEEEECCCCCEEEEee-CcCeEE
Q 007229 22 ILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGE-H-------------GYPVTVARYSPNGEWIASAD-VSGSVR 84 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~-h-------------~~~v~~~~~s~d~~~las~~-~d~~i~ 84 (612)
..+++++++..|.++. ++.|.++|... ..+..+.+ . -.....+++.+++..|..+. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4689998755555554 68999999874 44433332 1 12357899999988766654 456899
Q ss_pred EeecCCCceeeeeeeec-----------------CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc--
Q 007229 85 IWGTHNGFVLKNEFKVL-----------------SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG-- 145 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~-----------------~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~-- 145 (612)
++|..++. + ..+.+. -.....++|+|++..+.++..+.. .|.+++..++.. ..+.+
T Consensus 650 ~id~~~~~-V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~--~I~v~d~~~g~v-~~~~G~G 724 (1057)
T PLN02919 650 EIDFVNET-V-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH--QIWEYNISDGVT-RVFSGDG 724 (1057)
T ss_pred EEecCCCE-E-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC--eEEEEECCCCeE-EEEecCC
Confidence 99988764 2 222210 113467999995555544433322 234444333332 22211
Q ss_pred -------C------CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-------------cc--------ccc
Q 007229 146 -------H------SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-------------RE--------HSN 191 (612)
Q Consensus 146 -------~------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-------------~~--------~~~ 191 (612)
+ -.....++++|+++.++++.+.++.|++||+.++...... .. .-.
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 1 1245679999999877778888899999998876532111 00 011
Q ss_pred ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc----------CCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE----------DGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
....++++++|+.+++-..++.|++||..++......... .+.-.....++++++|+.+++-+.++.|++
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 3468899999998888888999999999877655433110 012235778999999998888888999999
Q ss_pred EEeecCCCCCee
Q 007229 262 WEILEDGSGGRV 273 (612)
Q Consensus 262 w~~~~~~~~~~~ 273 (612)
||+ .+++.
T Consensus 885 id~----~~~~~ 892 (1057)
T PLN02919 885 LDL----NKGEA 892 (1057)
T ss_pred EEC----CCCcc
Confidence 999 66554
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=4.2e-12 Score=128.71 Aligned_cols=198 Identities=17% Similarity=0.254 Sum_probs=158.5
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD- 135 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~- 135 (612)
.|-..|.++.=+|...+-+||+.||.|++|....+..+...-..-...|+.+.|+.+|.....+..|+ .+..|+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg-----~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDG-----DLSLWQA 2280 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCC-----ceeeccc
Confidence 35567888888888899999999999999999988875544444458899999999999888877776 366666
Q ss_pred CCceeeeeccCCceEEEEEEcCCCCEEEEEee---cCCeEEEEeCC--CCe-eeecccccccceEEEEECCCCCeEEEEE
Q 007229 136 SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG---EDFLVNFYEGP--PFK-FKLSHREHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~wd~~--~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
..++....+.|......+.|-.. ++++++ .++.+.+||.- .+. ++. ..|.+.++++++.|..+.|++|+
T Consensus 2281 ~pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred CCcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC
Confidence 35667777889999999998873 577664 46899999932 222 233 68999999999999999999999
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
.+|.|++||++..+.++.+.. +. ...++++++..|.++||++ .....+.++....
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~----s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRL----SEFGLLHTFPSEH 2410 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEc----cccchhhcCchhh
Confidence 999999999998888777721 33 5678999999999999999 7777777776654
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=6.4e-12 Score=127.48 Aligned_cols=191 Identities=13% Similarity=0.197 Sum_probs=156.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
.|.++.-+|...+.++|+ +|.|++|....++.+..++ .-...|+.+.|+.+|.....+..||.+.+|.+... ....
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk--~~~s 2287 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK--PYTS 2287 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc--ceec
Confidence 567788889888888887 8999999999888877654 23489999999999999999999999999999833 5556
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-----ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-----TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
...|......+.|-. ..+++++...... .+.+||+- ..++ ..|.+.++++++.|..+ ++++|+.+|.|
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~--n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v 2360 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNR--NVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEV 2360 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCC--cccchhcccCcccceee--eecCCCceEEEEcCcce-EEEecCCcCcE
Confidence 778888899999876 6677776544332 35566632 2333 88999999999999998 79999999999
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
++||++..++++.++. +. ...++++++..|.++||++.....+..+.
T Consensus 2361 ~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999888777664 34 56689999999999999999888887774
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.35 E-value=1.7e-11 Score=105.28 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=114.2
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCccc----ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL----TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
....+..+++++++|++..+....++++..... .....+......++.+..+......-.+++...+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 355667889999999999988887887765432 1111222222233333333333333334555666777766655
Q ss_pred eeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCeEEEE
Q 007229 528 VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVW 607 (612)
Q Consensus 528 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 607 (612)
. ....+|-+.++.++|+||+++++++..|..|++-.+.... ..-...-||..-|..++.-++..|+|+|.|++|++|
T Consensus 144 ~--~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 C--EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred c--chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 4 3466799999999999999999999999999999988733 444456689999999998888889999999999999
Q ss_pred EeccC
Q 007229 608 RLATE 612 (612)
Q Consensus 608 ~~~~~ 612 (612)
|+.++
T Consensus 221 d~~sg 225 (390)
T KOG3914|consen 221 DITSG 225 (390)
T ss_pred ecccC
Confidence 99764
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=1e-11 Score=114.79 Aligned_cols=293 Identities=12% Similarity=0.160 Sum_probs=199.4
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
-.+++.++..+|.|+-++.++.-| +.+.|++++....+.+..+.. .......+.......+-++.+....-.+|++
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp---w~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP---WQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc---chhcceecccCCCCceeEEecCcchhhhhhh
Confidence 456777889999999999888776 677788655555555544332 2233334444444666677777777778887
Q ss_pred CCCCC--CceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 314 SNLDK--APLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 314 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
..+.. ....+.+|...++.+.|.+.....+++++.|-.+..||++.......
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y-------------------------- 152 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY-------------------------- 152 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee--------------------------
Confidence 65443 44567899999999999976689999999999999999887543221
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 471 (612)
.|+.- ....+.++|+-....+.+.+..
T Consensus 153 --s~~~w---------------------------------------------------~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 153 --STSSW---------------------------------------------------RSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred --eeecc---------------------------------------------------cccCceeeecccCcchhhhccC
Confidence 11110 0123446666544444445666
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCc
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 550 (612)
..|++||++.+. .+...+++|...|+.++|.. -...+.+.+.|++|+.||........+.......+|..-++.|=|.
T Consensus 180 ~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 180 NDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred CceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 789999998776 34677888999999999876 3456788899999999998776554344444566777777777433
Q ss_pred --EEEEeecCcEEE---------EEEccCCCcceeeeecccccCeeeEEEe-c----------CceEEEccCCCeEEEEE
Q 007229 551 --MVATGSIDTCVI---------IYEIGKPASSRITIKNAHLGGVYGVAFM-D----------DFNVVSSGEDACIRVWR 608 (612)
Q Consensus 551 --~l~s~~~d~~i~---------iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~----------~~~l~s~~~d~~i~~w~ 608 (612)
++.---.+..+. .|+..+.. +.+..+.||.+.|....|- . +-.|++-+.|..+++|.
T Consensus 259 g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~-~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 259 GYCIMPMVGGNMVPQLRCENSDLEWNVFDLN-TPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred eeEeccccCCeeeeeccccchhhhhccccCC-cceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 332111122343 35555534 7789999999999776664 1 12499999999999999
Q ss_pred ecc
Q 007229 609 LAT 611 (612)
Q Consensus 609 ~~~ 611 (612)
+..
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 864
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.34 E-value=2.1e-09 Score=88.79 Aligned_cols=235 Identities=14% Similarity=0.179 Sum_probs=139.9
Q ss_pred EEEccCCCEEEEecCCEEEEEeCCCC--ceee---EeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 24 ISGNPKTDTILYCNGRSVLIRYLDKP--LHVE---FYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 24 ~~~s~d~~~l~~~~~~~i~i~~~~~~--~~~~---~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
++.++||+.||...+..|.|...+.. ..+. ..+...-.=..++||||+.+||.+...|+|+++|+.... +...-
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC
Confidence 67899999999999999999877643 1112 222333455789999999999999999999999998755 33222
Q ss_pred eec------CCCeEEEEECCCC------CEEEEEeCCCCeeeEEEEEec-----CCceeeeec---cCCceEEEEEEcCC
Q 007229 99 KVL------SGRIDDLQWSPDG------LRIVACGDGKGKSFVRAFMWD-----SGTTVGDFD---GHSRRVLSCEFKPT 158 (612)
Q Consensus 99 ~~~------~~~i~~~~~s~~~------~~l~~~~~~~~~~~i~i~~~~-----~~~~~~~~~---~~~~~v~~~~~~~~ 158 (612)
..+ ...|..+.|.+-. ..|++....+. ++-+... ..+..+.+. .+...|.++.++|.
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~---L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ---LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccce---eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 222 2356677775532 13444444331 2333332 223334432 35779999999999
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE--EEEEcCC------cEEEEecCCCCeeeeeec
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL--ISVSSDR------KGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l--~~~~~dg------~i~vwd~~~~~~~~~~~~ 230 (612)
.+.+++.|.....-..+ +.....+++-..-.+..+. ++...|+ +-.+|.+-+.+....
T Consensus 159 h~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~--- 224 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR--- 224 (282)
T ss_pred CCEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec---
Confidence 99545444443310000 0111222222222221111 1122121 123344332222211
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
.......|..|..+|||+.|++...+|.|.+|++ ..-++...+...
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i----PsL~~~~~W~~~ 270 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI----PSLRLQRSWKQD 270 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEec----Ccchhhcccchh
Confidence 1245678999999999999999999999999999 777776666544
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=6.2e-11 Score=98.04 Aligned_cols=160 Identities=12% Similarity=0.209 Sum_probs=112.1
Q ss_pred ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc-ccceeeccc-----cCceEEEEEcCC-CcEEEEEcCCCeEE
Q 007229 447 IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL-TEEMVLEKH-----RGAITVIQYSPD-VSMFASADGNREAI 519 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~-----~~~i~~~~~s~~-~~~l~~~~~d~~i~ 519 (612)
-.|...+.++.|..|.+.++++ .|=.|.+|+++-... ..+..++.| ..-|++..|+|. ...+...+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3477889999999999888765 456788998753221 011222333 346899999994 45666777889999
Q ss_pred EEecCCccee------e---------ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc--
Q 007229 520 VWDRVSKEVK------L---------NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG-- 582 (612)
Q Consensus 520 iwd~~~~~~~------~---------~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~-- 582 (612)
+-|++...+. . ..+.+-...|..+.|+++|+++++-+.- +++|||+.... .++.+..-|..
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k-~pikTi~~h~~l~ 325 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAK-NPIKTIPMHCDLM 325 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccccc-CCceeechHHHHH
Confidence 9999843321 0 0112223568889999999999987654 69999999855 77776654432
Q ss_pred ----------Ce---eeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 583 ----------GV---YGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 583 ----------~v---~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
.| ..+.|| |++.+++|+..+..-+|-.
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 22 457889 8999999998887777753
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.4e-11 Score=110.07 Aligned_cols=284 Identities=13% Similarity=0.163 Sum_probs=187.6
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-------CeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-------FKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
.+..+.+|+..|..++--.+.+ -+++++.|++|++|.++. ..+..+++.|..+|.++.|-.+-+++++ .|
T Consensus 727 rL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 4567899999999987766666 499999999999998653 3467788999999999999999887775 47
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEE-eCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTV-SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
|.|.+||.--++.+...... ...+.+..+...+ +...++.+ +...+++++|. ...+....++..+
T Consensus 804 ~giHlWDPFigr~Laq~~da-pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da----Rsce~~~E~kVcn------- 871 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDA-PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA----RSCEWTCELKVCN------- 871 (1034)
T ss_pred CcceeecccccchhHhhhcC-cccCCCceeEecccCcchheeeeccchhhheeeec----ccccceeeEEecc-------
Confidence 89999999888877654322 2222333333334 33444444 66789999998 6666555544332
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
..+....+.+++..+. ++.++.+-.+|.|.+.|.++++.+.....
T Consensus 872 ----------------------------------a~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 872 ----------------------------------APGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred ----------------------------------CCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 1234455666666632 88899999999999999999987775554
Q ss_pred cccceEEEEe-eccEEEEecCCCeEEE-EecCCCCCCccceeccCCCcceeee-cCCCCcEEEEEeeccEEEee------
Q 007229 369 YDARIKCLAA-VEEVIFTAGFDNKVWR-VPLCEGECGDAEHIDVGSQPLDLSL-ALSSPELALVSTESGVILLD------ 439 (612)
Q Consensus 369 ~~~~i~~~~~-~~~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------ 439 (612)
..-....++. .++.++....|..+.+ |-...+... .....++....| ..-++.++.....+.+.++.
T Consensus 917 mecdllqlaapsdq~L~~saldHslaVnWhaldgimh----~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~h 992 (1034)
T KOG4190|consen 917 MECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMH----LQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELH 992 (1034)
T ss_pred ccchhhhhcCchhHHHHhhcccceeEeeehhcCCeee----eccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhh
Confidence 4444444444 5556666677777776 765544321 222222222222 22344555555555555554
Q ss_pred ---cccceeeecccceEEEEEEccCCCeEEEEecCCeEEE
Q 007229 440 ---SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHI 476 (612)
Q Consensus 440 ---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 476 (612)
+-..++.-+.++..++++.-|-+.-+..|.+.|.|.+
T Consensus 993 a~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 993 AESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2223333446677888998887777788888888765
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.3e-11 Score=110.36 Aligned_cols=282 Identities=16% Similarity=0.247 Sum_probs=187.5
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce------eeeeeeecCCCeEEEEECCCCCEEEEEeCCCC
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV------LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG 125 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 125 (612)
+..+.||+..|.+++--.+.+-+++++.|.+|++|.+..... ...+...|+.+|..+.|..+-++++++...
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g-- 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG-- 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc--
Confidence 345789999999998888888899999999999999874221 345677899999999999999999887543
Q ss_pred eeeEEEEEec--CCceeeeecc--CCceEEEEEEcC--CCCEEEEEeecCCeEEEEeCCCCeeeeccc-----ccccceE
Q 007229 126 KSFVRAFMWD--SGTTVGDFDG--HSRRVLSCEFKP--TRPFRIATCGEDFLVNFYEGPPFKFKLSHR-----EHSNFVN 194 (612)
Q Consensus 126 ~~~i~i~~~~--~~~~~~~~~~--~~~~v~~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~ 194 (612)
+..|+ .++++..... ..+.+..+..-| +...+++.|+...+|+++|.+.++....++ +.+.-+.
T Consensus 806 -----iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 806 -----IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred -----ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 45555 6666654321 112222232222 344345555888999999999887665543 4556789
Q ss_pred EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE-EEeecCCCCCee
Q 007229 195 CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV-WEILEDGSGGRV 273 (612)
Q Consensus 195 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i-w~~~~~~~~~~~ 273 (612)
+++..+.|+.++.+-..|.|.+.|.++|+.+.... ........++ .|..+.++....|.++.+ |.. ..+..
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr---pmecdllqla-apsdq~L~~saldHslaVnWha----ldgim 952 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWR---PMECDLLQLA-APSDQALAQSALDHSLAVNWHA----LDGIM 952 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCC---cccchhhhhc-CchhHHHHhhcccceeEeeehh----cCCee
Confidence 99999999999999999999999999999887763 3333344443 344556777777888888 876 55555
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC---Cceeec--CcccceeEEEEEecCCcEEEEEec
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK---APLSFS--GHVKNVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~ 348 (612)
..+.+.++. ...-+..-+..++....++.+.+|.-..... .+..++ ...+..++++..+- +..++.|..
T Consensus 953 h~q~kpppe-----pahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL-N~afLaGne 1026 (1034)
T KOG4190|consen 953 HLQDKPPPE-----PAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL-NCAFLAGNE 1026 (1034)
T ss_pred eeccCCCCc-----chhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc-cchhhccCC
Confidence 444433321 1111222266788888888888886332211 111121 12344555555532 345566777
Q ss_pred CCcEEE
Q 007229 349 DGAIIK 354 (612)
Q Consensus 349 dg~i~~ 354 (612)
.|.|.+
T Consensus 1027 ~G~IaL 1032 (1034)
T KOG4190|consen 1027 HGAIAL 1032 (1034)
T ss_pred CCceee
Confidence 777654
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.30 E-value=1.5e-08 Score=86.80 Aligned_cols=253 Identities=15% Similarity=0.210 Sum_probs=166.9
Q ss_pred CceeEEEEcc-CCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceE--EEEECCCCCEEEEee-----CcCeEEEeec
Q 007229 19 GRGILISGNP-KTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVT--VARYSPNGEWIASAD-----VSGSVRIWGT 88 (612)
Q Consensus 19 ~~v~~~~~s~-d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~--~~~~s~d~~~las~~-----~d~~i~iwd~ 88 (612)
.+...++.+| +...++++. +....+||..+++..+.+....+.-. .-+||+||++|.+.- ..|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4566899999 566666665 67999999999998877654333222 468999999999863 4578999999
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
..+-....++..|.-.-..+.+.|||+.|+++-..= --.-++++ ..|-....
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI------~Thpd~GR----------------------~kLNl~tM 136 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI------ETHPDSGR----------------------AKLNLDTM 136 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC------ccCcccCc----------------------eecChhhc
Confidence 955446668888888889999999998888764331 00111111 12333344
Q ss_pred CCeEEEEeCCCCeeeec--c--cccccceEEEEECCCCCeEEEEEcCCc-------EEEEecCCCCeeeeeec----cCC
Q 007229 169 DFLVNFYEGPPFKFKLS--H--REHSNFVNCIRFSPDGSKLISVSSDRK-------GLIYDGKSGEKIGEFSS----EDG 233 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~--~--~~~~~~v~~~~~s~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~----~~~ 233 (612)
+.++..-|..+|+.+.. + ..|...|..+++.++|..++..-..|. +-+++ .++.+..+.. ...
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRR 214 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHh
Confidence 44555566667776655 4 347788999999999976655443332 33443 3333333321 113
Q ss_pred ccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 234 HHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
..+.+-+|++++++.++++.+ ..+.+.+||. .+++.+....... .+++....+.+++.+..|.+....
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~----~tg~~~~~~~l~D-------~cGva~~~~~f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA----ATGRLLGSVPLPD-------ACGVAPTDDGFLVSSGQGQLIRLS 283 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEEC----CCCCEeeccccCc-------eeeeeecCCceEEeCCCccEEEcc
Confidence 457789999999998886665 4578999999 8999988776653 344444444455555555544433
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=2.8e-11 Score=112.05 Aligned_cols=294 Identities=16% Similarity=0.197 Sum_probs=192.3
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC--CCeEEEEECCCC---CEEEEEeCCCCeeeEEEE
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS--GRIDDLQWSPDG---LRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~s~~~---~~l~~~~~~~~~~~i~i~ 132 (612)
-.+++.++.++|-|+-+|.++.-| +.+-|+...-... ..-.|. -.|-...|+|.. .++++.+.... .+|
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts~qka----iiw 96 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA----IIW 96 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCc-eeeeccCcchhcceecccCCCCceeEEecCcchh----hhh
Confidence 356788999999999999998776 5566766543222 222232 356778888754 34555555542 255
Q ss_pred Eec---CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-eeecccccccceEEEEECCCCCeEEEE
Q 007229 133 MWD---SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 133 ~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
.+. ....-..+.+|...|+.+-|+|+.+-++++++.|-.+..||+++.. ..............++|+.....+++.
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 544 3344556789999999999999998899999999999999988754 344444455567788998755555556
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc----c
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS----N 283 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~ 283 (612)
+..+.|++||++.|...... .++|...|..+.|.. ....+.+.+.||+|++||........+...+-....- .
T Consensus 177 shg~~i~vwd~r~gs~pl~s--~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCS--LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred ccCCceEEEeccCCCcceEE--ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 77788999999887654333 247888899998875 3345888899999999998443222222211111100 0
Q ss_pred ccceeeeeeec-cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-e--------cCCcEEEEEecCCcEE
Q 007229 284 AVEDMLVGCLW-QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-K--------ISQQTILSSSYDGAII 353 (612)
Q Consensus 284 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~--------~~~~~l~~~~~dg~i~ 353 (612)
+.......+.. .++.+.....++....|+......++..+.||...|....|- . ...-.|++-+.|..++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 00000111111 122222333344555566667778899999999988776665 1 1134789999999999
Q ss_pred EEEcCC
Q 007229 354 KWIRGV 359 (612)
Q Consensus 354 ~wd~~~ 359 (612)
+|-+..
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 997654
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.22 E-value=1e-07 Score=83.74 Aligned_cols=222 Identities=14% Similarity=0.101 Sum_probs=146.2
Q ss_pred EEEEcc-CCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEEC-CCCCEEEEeeCcCeEEEeecCCCceeeeeee
Q 007229 23 LISGNP-KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYS-PNGEWIASADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 23 ~~~~s~-d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s-~d~~~las~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
+++|.+ ++.++++-. ++.|+.|+..+++... +.... ...+++. ++++++++. .. .+.++|..+++. .....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEE-TT-CEEEEETTTTEE-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEE-cC-ceEEEecCCCcE-EEEee
Confidence 578898 555555544 7899999999876644 22222 6677777 776665554 44 456669988863 32333
Q ss_pred e-----cCCCeEEEEECCCCCEEEEEeCCCCee-e--EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 100 V-----LSGRIDDLQWSPDGLRIVACGDGKGKS-F--VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 100 ~-----~~~~i~~~~~s~~~~~l~~~~~~~~~~-~--i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
. .....+.+++.|+|+..++........ . -.++.++....+..+...-.....++|+|+++.++++-+..+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccce
Confidence 2 334688999999999777665432110 0 3577777554444444445667899999999976778888899
Q ss_pred EEEEeCCCCee-------eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 172 VNFYEGPPFKF-------KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 172 i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
|..+++..... ...+....+....+++.++|++.++....+.|.++|.+ |+.+..+..+ ...+++++|.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fg 233 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFG 233 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEE
Confidence 99998753211 11222223358889999999977777778999999976 8888888432 3478999995
Q ss_pred -cCCCEEEEEe
Q 007229 245 -PDGKKVLTVS 254 (612)
Q Consensus 245 -~~~~~l~~~~ 254 (612)
++.+.|++.+
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 5666665543
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=2.5e-08 Score=104.44 Aligned_cols=157 Identities=14% Similarity=0.072 Sum_probs=105.1
Q ss_pred EEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccce------eecc------ccCceEEEEEcCCCcE-EEEEcCCCeE
Q 007229 453 VTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEM------VLEK------HRGAITVIQYSPDVSM-FASADGNREA 518 (612)
Q Consensus 453 i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~------~~~~------~~~~i~~~~~s~~~~~-l~~~~~d~~i 518 (612)
...++++| ++.++++...++.|++||..++...... ...+ .-.....++++|+++. +++-..++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 35688888 4555566667788999988766431000 0001 1123567999999884 4555667999
Q ss_pred EEEecCCcceeeec------------ccc--------cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec
Q 007229 519 IVWDRVSKEVKLNN------------MLF--------HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 519 ~iwd~~~~~~~~~~------------~~~--------~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
++||+.++...... +.. .-.....++++++|+++++-..+++|++||..+ + .. ..+.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g-~v-~tia 841 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-K-RV-TTLA 841 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-C-eE-EEEe
Confidence 99999876532110 000 011246889999999888888999999999987 3 22 2221
Q ss_pred --------------ccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 579 --------------AHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 579 --------------~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
+.-.....++++ +++.+++-+.++.|++||++++
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 122356789999 8888888889999999999763
No 292
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=6.8e-09 Score=98.31 Aligned_cols=370 Identities=12% Similarity=0.104 Sum_probs=208.1
Q ss_pred ceeEEEEccCCCEEEEec-----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 20 RGILISGNPKTDTILYCN-----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
..+-.+|+|...++|+++ +|+|.||- ++|++.+-.. -.-.+++++|+|..-.||.|-.-|.+.+|...+.+ .
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-T 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce-e
Confidence 445678999999999986 58888874 5566554332 23345679999999999999999999999999887 5
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee--ccCC--ceEEEEE----------------
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF--DGHS--RRVLSCE---------------- 154 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~--~~v~~~~---------------- 154 (612)
......|..+|..+.|||+|..|+++..-+ .+.+|.++.-..+... -.|. +.++-++
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g---~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKa 170 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPG---SVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKA 170 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCc---eeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhh
Confidence 556778999999999999999999988776 5677776621111110 0010 0111111
Q ss_pred ---------------------------EcCCCCEEEEEeecCCeEEEEeCCCC---------------------------
Q 007229 155 ---------------------------FKPTRPFRIATCGEDFLVNFYEGPPF--------------------------- 180 (612)
Q Consensus 155 ---------------------------~~~~~~~~l~~~~~d~~i~~wd~~~~--------------------------- 180 (612)
=.|+|. .+..++.+|+|+--|-...
T Consensus 171 aVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~-~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 171 AVTGDESALDEPFNWKESLAERSDEKSGVPKGT-EFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIE 249 (1416)
T ss_pred hccCchhhhcccccCccchhhccccccCCCCCc-EEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEee
Confidence 124454 4777777888776652110
Q ss_pred -------------eee----ecc----c-----------------------ccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 181 -------------KFK----LSH----R-----------------------EHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 181 -------------~~~----~~~----~-----------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
... ..+ . .....+.|++++..+..|..|...|.+.+
T Consensus 250 ~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~ 329 (1416)
T KOG3617|consen 250 FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTI 329 (1416)
T ss_pred eceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEE
Confidence 000 000 0 01235889999999989999999999999
Q ss_pred EecCCC-------CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE--------------eecCCCCCeeEe
Q 007229 217 YDGKSG-------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE--------------ILEDGSGGRVIK 275 (612)
Q Consensus 217 wd~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~--------------~~~~~~~~~~~~ 275 (612)
|--... .....+.......+.|..+.|.|--..+++.+... +.+.. +.....+..+..
T Consensus 330 w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~-v~ll~E~~l~~~h~~~~~A~q~ss~S~~L~h 408 (1416)
T KOG3617|consen 330 WLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEED-VVLLGENSLTVKHRGKMAAIQTSSNSFTLLH 408 (1416)
T ss_pred eeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhh-eeeeccCchHHHHhhhhHHhhhcCCceEEEe
Confidence 963221 12223322334567899999998665555444332 22221 111111111111
Q ss_pred eeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC-CceeecCcccceeEEEEEecCCcEEEEEecCCcEEE
Q 007229 276 TFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK-APLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIK 354 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 354 (612)
.+.............+-..-...-++.....+|..|++...+. .........-..+.++..+ .+.+..++.+ |.+
T Consensus 409 c~sGv~~~l~~~~~~~gi~l~e~~lvvwNgr~v~~y~lq~SG~la~~~~~tF~cet~~la~~n--qN~ycies~~--Vfv 484 (1416)
T KOG3617|consen 409 CTSGVSQDLKLSIPSAGICLGEKQLVVWNGRTVVTYDLQTSGSLATIQCTTFSCETTSLAIVN--QNLYCIESDK--VFV 484 (1416)
T ss_pred eccchhhhhhhccchhhheeccceEEEEcCceEEEEEecccchhHHHhhhhhccccchHhHhh--cceEEeccCc--EEE
Confidence 1111100000001111111244556667788889999865442 1112222222223333333 4444444433 333
Q ss_pred EEcCCceeeee-ceecccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 355 WIRGVGYSSKL-EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 355 wd~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
+.+..-....+ ...-.+.+..+...+.+++.....+..+.+|+....
T Consensus 485 rt~qGtv~q~i~~seiEg~~~~ldi~g~~l~v~t~~~~~k~~dvsr~e 532 (1416)
T KOG3617|consen 485 RTLQGTVRQEISLSEIEGVVVLLDIMGELLIVQTVSTVAKRLDVSRAE 532 (1416)
T ss_pred EecchhhhhhccchhccCceehhhhccceeEEeehHHHHHHhhhhhhc
Confidence 33332211111 111445555666678888888777777777766544
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.20 E-value=8e-10 Score=89.23 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=124.5
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCC------------ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKP------------LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~------------~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
.++.+.++.+-.++....++.+.....-++ .++..+..|+++=.+-+.+--+..++++..||.+.+.+
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 366777776655443333444433332222 12333444555544555555677899999999999999
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee--eEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEE
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS--FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIAT 165 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 165 (612)
.+....+..........-.+.+....+..+.+.+-..-.. ...+|..+..+.+..-..-...|.+++-+|..+.++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 8874333322222222222333344455555443221000 01223333222111112223459999999998889999
Q ss_pred eecCCeEEEEeCCCCeeeec-ccccccceEEEEECC-CCCeEEEEEcCCcEEEEecCC
Q 007229 166 CGEDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 166 ~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~ 221 (612)
|+.||.+-+||.+....... ++.|+.++..+.|+| ++..|+++++||.+.-||..+
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999998755444 778999999999999 567899999999999999654
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=6.2e-10 Score=95.88 Aligned_cols=165 Identities=17% Similarity=0.165 Sum_probs=118.8
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee--eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN--EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT 138 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~ 138 (612)
.+..+..+|.+++||.+..+....++++.......+ ....-...-+++.|..+......+-..++...+.++..+. .
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-G 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-c
Confidence 344567888999999998888877887765542111 1112233445566666665555554444332333443333 4
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec-ccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+...+-||-..++.++++||++ .++++..|..|++-....-..+.. .-||..-|..++.-++. .|++++.|+++++|
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLW 220 (390)
T ss_pred CcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEE
Confidence 4455678999999999999999 599999999999988776655555 45899999999998654 58999999999999
Q ss_pred ecCCCCeeeee
Q 007229 218 DGKSGEKIGEF 228 (612)
Q Consensus 218 d~~~~~~~~~~ 228 (612)
|+.+|+.+.++
T Consensus 221 d~~sgk~L~t~ 231 (390)
T KOG3914|consen 221 DITSGKLLDTC 231 (390)
T ss_pred ecccCCccccc
Confidence 99999998776
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.19 E-value=9.4e-08 Score=90.47 Aligned_cols=300 Identities=12% Similarity=0.033 Sum_probs=179.1
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccc--c--------ceE-EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHS--N--------FVN-CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~--------~v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
.++.++.++.+.-+|.++|+.+....... . .+. .+.. ++..++.++.++.+..+|.++|+.+.....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 47777788899999999998877643221 0 000 1111 355678888899999999999999887732
Q ss_pred cCCccccEEE-EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 231 EDGHHGSIYA-VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 231 ~~~~~~~v~~-i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
...+.+ ... .+..++.+..+|.+.-+|. .+++.+-.+..................++.++.++.+|.+.
T Consensus 149 ----~~~~~ssP~v--~~~~v~v~~~~g~l~ald~----~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 149 ----AGEALSRPVV--SDGLVLVHTSNGMLQALNE----SDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVS 218 (394)
T ss_pred ----CCceecCCEE--ECCEEEEECCCCEEEEEEc----cCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEE
Confidence 222222 112 2345667778899999999 88888877765321100000111122356788888899998
Q ss_pred EEEcCCCCCCceeecCcc---c------ce-eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEee
Q 007229 310 IFSASNLDKAPLSFSGHV---K------NV-STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAV 379 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~---~------~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 379 (612)
.++..+.......-.... . .+ ..... . +..++.++.+|.+..+|..+++..-.... .....+...
T Consensus 219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~--~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~ 293 (394)
T PRK11138 219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-V--GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVD 293 (394)
T ss_pred EEEccCChhhheeccccCCCccchhcccccCCCcEE-E--CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEE
Confidence 888766543322111000 0 00 01111 2 56777788899999999998876543321 112234557
Q ss_pred ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc
Q 007229 380 EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA 459 (612)
Q Consensus 380 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 459 (612)
++.++.++.++.+..+|..+++.. |..... . .....+..+
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~----------------------------------W~~~~~----~-~~~~~sp~v- 333 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVEL----------------------------------WSQSDL----L-HRLLTAPVL- 333 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEE----------------------------------Eccccc----C-CCcccCCEE-
Confidence 888888899999999998776532 110000 0 000111111
Q ss_pred cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEE-EEEcCCCcEEEEEcCCCeEEEEec
Q 007229 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITV-IQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 460 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
.+.++++++.+|.++..|..+++......+ ....+.+ ..+ .+..|..++.||.++.+++
T Consensus 334 -~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~--~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 -YNGYLVVGDSEGYLHWINREDGRFVAQQKV--DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEEc--CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 245788899999999999999987333222 2222221 122 3447888889999988764
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=1.4e-08 Score=82.59 Aligned_cols=237 Identities=13% Similarity=0.041 Sum_probs=156.1
Q ss_pred eEEEEcc-----CCCEEEEec-CCEEEEEeCCCCce-eeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce
Q 007229 22 ILISGNP-----KTDTILYCN-GRSVLIRYLDKPLH-VEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 22 ~~~~~s~-----d~~~l~~~~-~~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~ 93 (612)
..+.|-| ...+||.++ .|..-+|...+.+. .+....|...|+-+.=.-| .-.+..++.|.++++.+++.+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s- 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS- 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-
Confidence 3455655 445777775 68999999986543 3334455554443322222 2245667788889999888765
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeee--eccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGD--FDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
.........-.+.++++++|++++++.++... +-.+..+ .++.+.. ....++.-.+..|+.... .+|++..||
T Consensus 150 ~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~---Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg 225 (344)
T KOG4532|consen 150 NKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRR---VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDG 225 (344)
T ss_pred ccceeeccccceeeeEEcCCCceEEEecCCCc---ceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCC
Confidence 22222222234889999999999999998873 3444444 3333322 333445567788998887 699999999
Q ss_pred eEEEEeCCCCeeee-----cccccccceEEEEECCCCC--eEEEEEcCCcEEEEecCCCCeeeeeeccC----Ccc-ccE
Q 007229 171 LVNFYEGPPFKFKL-----SHREHSNFVNCIRFSPDGS--KLISVSSDRKGLIYDGKSGEKIGEFSSED----GHH-GSI 238 (612)
Q Consensus 171 ~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~-~~v 238 (612)
++.+||++...... +-..|.+.+..+.|++.|. +|+..-.-+.+.+-|+++++..+.+.... .|. ..|
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~i 305 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHI 305 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccc
Confidence 99999988754332 2346899999999998663 45554556789999999988776653321 222 347
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 239 YAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
..-.|+.++.-+.+..++ .+.-|++
T Consensus 306 fgt~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 306 FGTNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred ccccccCCCcccccccch-hhheeec
Confidence 777888777766666544 4556665
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=9.9e-10 Score=91.09 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=82.3
Q ss_pred eEEEEEEccC-CCeEEEEecCCeEEEEEccCcccc------cce--------eeccccCceEEEEEcCCCcEEEEEcCCC
Q 007229 452 TVTACAIAPD-GSEAIVGGQNGKLHIYSISGNTLT------EEM--------VLEKHRGAITVIQYSPDVSMFASADGNR 516 (612)
Q Consensus 452 ~i~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~------~~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 516 (612)
-|++..|+|. ...+...+..|.|++-|++...+- ... -+.+-...|..+.|+++|+++++-+. -
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-l 301 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-L 301 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-c
Confidence 4778888885 356667788899999999844320 001 11223356889999999999998876 5
Q ss_pred eEEEEecCCcceeeecccccc------------cce---eEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 517 EAIVWDRVSKEVKLNNMLFHT------------ARI---NCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 517 ~i~iwd~~~~~~~~~~~~~~~------------~~i---~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+++|||....+....+..-|. ..| ..+.||-|.+.+.+|+.....-+|-..+
T Consensus 302 tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 302 TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 899999987765444443332 222 2478999999999999988888887554
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.17 E-value=8.8e-08 Score=90.67 Aligned_cols=307 Identities=9% Similarity=-0.021 Sum_probs=179.8
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeE------EEEECC--CCCEEEEEeCCCCeeeEEEEEecCCceeee
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRID------DLQWSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGD 142 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~------~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~ 142 (612)
+..+..++.+|.+.-+|..+++.+.+.-........ .+.-.| ++..++.++.++ .+..++.++|+.+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g---~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKG---QVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCC---EEEEEECCCCCCccc
Confidence 456777777888999999888854332111100000 000011 344555555554 345555668888887
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEE-EEECC--CCCeEEEEEcCCcEEEEec
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNC-IRFSP--DGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~-~~~s~--~~~~l~~~~~dg~i~vwd~ 219 (612)
.+............ ++ +++.+..++.+.-+|.++|+.+............ ..-+| .+..++.++.+|.+..+|.
T Consensus 146 ~~~~~~~~ssP~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAGEALSRPVVS-DG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCCceecCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 76543322222222 33 4777888999999999999988776432111100 00112 1335777788999999999
Q ss_pred CCCCeeeeeeccCCcc-c---cEEEEEEec--CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 220 KSGEKIGEFSSEDGHH-G---SIYAVSWSP--DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~---~v~~i~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
++|+.+.......... . ....+.-+| .+..++.++.+|.+..+|. .+++.+-...... .....
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~----~tG~~~W~~~~~~-------~~~~~ 291 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL----RSGQIVWKREYGS-------VNDFA 291 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC----CCCCEEEeecCCC-------ccCcE
Confidence 9998766542111100 0 011111122 2456777778899999999 7787665443221 11233
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
..++.+++++.+|.+..+|..+.......-........+.... +..++.++.+|.+...|..+++...........+
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~ 368 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGF 368 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 4578899999999999999766543222111011111222222 6788899999999999999988766544322223
Q ss_pred E-EEEeeccEEEEecCCCeEEEEec
Q 007229 374 K-CLAAVEEVIFTAGFDNKVWRVPL 397 (612)
Q Consensus 374 ~-~~~~~~~~l~~~~~~~~i~~~~~ 397 (612)
. ...+.++.++.++.+|.+..++.
T Consensus 369 ~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 369 LSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred eeCCEEECCEEEEEeCCceEEEEeC
Confidence 2 22346778999999999888764
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.17 E-value=1.6e-08 Score=83.78 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=122.9
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEecc-------CCCceEEEEECCCC---C---EEEEeeCcCeEEE
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGE-------HGYPVTVARYSPNG---E---WIASADVSGSVRI 85 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~-------h~~~v~~~~~s~d~---~---~las~~~d~~i~i 85 (612)
+-.-++||||+.+||++. .|+|.++|+....+. .+.. -...|..+.|.+.. + .|..-..+|.++=
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 345699999999999998 799999999864433 3322 23567777776632 1 3555557888777
Q ss_pred eecCCC--ce--eeeeee---ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC
Q 007229 86 WGTHNG--FV--LKNEFK---VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 86 wd~~~~--~~--~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (612)
|-+..+ +. ....+. .+..+|.++.|+|..+.|+++|..... .+. -++....+++-..-.+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~---------~~~----s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ---------DGM----SKASSCGLTAWRILSD 190 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC---------Ccc----ccccccCceEEEEcCC
Confidence 765332 11 222222 246799999999999999988866521 000 0112223333333333
Q ss_pred CCEE-EEEeecCCe------EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 159 RPFR-IATCGEDFL------VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 159 ~~~~-l~~~~~d~~------i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.+|. .++...|+. -.+|.+.+.+...........|..|..||||+.|++...+|.|.+|++.+-+.....
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 3332 222222221 234444443333222345678999999999999999999999999999887777666
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.16 E-value=1.3e-08 Score=82.84 Aligned_cols=156 Identities=12% Similarity=0.067 Sum_probs=110.0
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccce-eeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee-
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM-VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL- 530 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~- 530 (612)
..++++++|++++++.+....|..|.++........ ....-+..-.+..|+.....+|++..||++.|||++......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 678999999999999999999999999765432222 333344455677899999999999999999999998765432
Q ss_pred ---ecccccccceeEEEecCCCc--EEEEeecCcEEEEEEccCCCcceeee------ecccccC-eeeEEEe-cCceEEE
Q 007229 531 ---NNMLFHTARINCLAWSPSST--MVATGSIDTCVIIYEIGKPASSRITI------KNAHLGG-VYGVAFM-DDFNVVS 597 (612)
Q Consensus 531 ---~~~~~~~~~i~~~~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~h~~~-v~~~~~~-~~~~l~s 597 (612)
..-..|.+.+..+.|++-|. +|...-.-+.+.+-|+++.. .+... ...|... |..-.|+ ++..+.+
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~-~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV-NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc-eeeEEecCccccccccccccccccccCCCccccc
Confidence 22344889999999998664 45555455679999998833 22211 2234433 8888888 6666666
Q ss_pred ccCCCeEEEEEec
Q 007229 598 SGEDACIRVWRLA 610 (612)
Q Consensus 598 ~~~d~~i~~w~~~ 610 (612)
..++ .+.-|++.
T Consensus 320 ~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 320 KNEL-QGAEYNIL 331 (344)
T ss_pred ccch-hhheeecc
Confidence 5554 34555554
No 301
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.05 E-value=3.6e-06 Score=68.80 Aligned_cols=147 Identities=9% Similarity=-0.037 Sum_probs=97.7
Q ss_pred cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 156 KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 156 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
.++.+.+++.|+..+.+.--|..+|+...... -..++.+-+.- -|++++.|+..|.+++.+.++|.....+.. .
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~ 92 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----L 92 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee----h
Confidence 34444578889999999999999998876521 22333333322 477899999999999999999988887732 2
Q ss_pred ccEE-EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 236 GSIY-AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 236 ~~v~-~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
+.|. .....+++..+..++.|+..+..|. .+..++...+.....- ..-.+...+..++++...|.+.--...
T Consensus 93 ~~vk~~a~~d~~~glIycgshd~~~yalD~----~~~~cVykskcgG~~f---~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDP----KTYGCVYKSKCGGGTF---VSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred hhhccceEEcCCCceEEEecCCCcEEEecc----cccceEEecccCCcee---ccceecCCCceEEEEeccceEEEEccC
Confidence 2222 2345668999999999999999999 7777776654432110 011122225667777777766655543
Q ss_pred C
Q 007229 315 N 315 (612)
Q Consensus 315 ~ 315 (612)
.
T Consensus 166 ~ 166 (354)
T KOG4649|consen 166 P 166 (354)
T ss_pred C
Confidence 3
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=3e-09 Score=86.00 Aligned_cols=151 Identities=16% Similarity=0.231 Sum_probs=103.0
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceeec-cccCceEEEEEcCCCcEEEEEc-----CCCeEEEEecCCcceee
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAITVIQYSPDVSMFASAD-----GNREAIVWDRVSKEVKL 530 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~iwd~~~~~~~~ 530 (612)
+.+.-+..++++..||.+.+++.+. .+......+ .|.+. .+.++...+.++.++. .-+..+.|+++..+.+.
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred cccccCCceEecCCCceEEEEechH-HHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 3444567799999999999999876 221111111 12211 1222333444444432 12356677776655443
Q ss_pred ecccccccceeEEEecCCCc-EEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe--cCceEEEccCCCeEEEE
Q 007229 531 NNMLFHTARINCLAWSPSST-MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM--DDFNVVSSGEDACIRVW 607 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~w 607 (612)
.... ....|++++-+|..+ .+++|+.||.+-+||.+... .....++.|..++..+-|. ++..|+++++||.+.-|
T Consensus 174 ~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 174 PSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 2222 223499999999654 56788899999999999855 7788899999999999999 77889999999999999
Q ss_pred Eecc
Q 007229 608 RLAT 611 (612)
Q Consensus 608 ~~~~ 611 (612)
|-++
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9763
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.03 E-value=3.9e-05 Score=77.04 Aligned_cols=258 Identities=11% Similarity=0.163 Sum_probs=163.6
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecC---CEEEEEeCC-CCce----e-eEeccCCCceEEEEECCCC
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNG---RSVLIRYLD-KPLH----V-EFYGEHGYPVTVARYSPNG 71 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---~~i~i~~~~-~~~~----~-~~~~~h~~~v~~~~~s~d~ 71 (612)
|=++.+...-...+..+.+.-.+..++|.-..++++.. -.+.++.++ .++. . .........|.++.|..++
T Consensus 1 MkNL~l~~~~~f~~~~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~ 80 (1265)
T KOG1920|consen 1 MKNLKLRYMKTFEIVAGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADT 80 (1265)
T ss_pred CCceeeeeeeeecccCCCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEeccc
Confidence 44455555555666666665666777777666666631 122233222 2221 0 1112234689999999999
Q ss_pred CEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CC------------
Q 007229 72 EWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SG------------ 137 (612)
Q Consensus 72 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~------------ 137 (612)
.-++.+..+|.|.+-|.++.. ......-..+|.+++||||++.++..+..... .+.-.+|+ ..
T Consensus 81 ~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tl-l~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 81 NSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTL-LFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred ceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEE-EEEeccccchhccccccccccccc
Confidence 999999999999999988875 33455567899999999999999988876632 11111121 11
Q ss_pred -------ceeeeeccCC---------------------ceEEEEEEcCCCCEEEEEe----ecC-CeEEEEeCCCCeeee
Q 007229 138 -------TTVGDFDGHS---------------------RRVLSCEFKPTRPFRIATC----GED-FLVNFYEGPPFKFKL 184 (612)
Q Consensus 138 -------~~~~~~~~~~---------------------~~v~~~~~~~~~~~~l~~~----~~d-~~i~~wd~~~~~~~~ 184 (612)
+.-..|.|.. +.=+.+.|--||+| +++. ..+ +.|++||-+ |.+..
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~RkirV~drE-g~Lns 235 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGTRKIRVYDRE-GALNS 235 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCceeEEEeccc-chhhc
Confidence 1111222111 11235889999996 5552 223 799999977 54443
Q ss_pred cccccccceEEEEECCCCCeEEEEEc---CCcEEEEecCCCCeeeeeeccCCccc-cEEEEEEecCCCEEEE---EeCCC
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSS---DRKGLIYDGKSGEKIGEFSSEDGHHG-SIYAVSWSPDGKKVLT---VSADK 257 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~---~~~dg 257 (612)
.-....+-=.+++|-|.|..+++... |+.|.++. ++|-....+..+...+. ++..++|+.++..|++ .....
T Consensus 236 ~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 236 TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccccc
Confidence 33333344568999999998887643 56799998 55665555443323333 3999999999998887 44444
Q ss_pred cEEEEEe
Q 007229 258 SAKVWEI 264 (612)
Q Consensus 258 ~i~iw~~ 264 (612)
.|++|..
T Consensus 315 ~v~lwt~ 321 (1265)
T KOG1920|consen 315 LVQLWTT 321 (1265)
T ss_pred eEEEEEe
Confidence 5999998
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=2.5e-06 Score=75.04 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=130.9
Q ss_pred EEEECC-CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEEC-CCCCEEEEEeCCCCeeeEEEEEecCCceee
Q 007229 64 VARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWS-PDGLRIVACGDGKGKSFVRAFMWDSGTTVG 141 (612)
Q Consensus 64 ~~~~s~-d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~ 141 (612)
+++|.+ ++.++++--..+.|..|+..+++... +. . .....+++. ++++ |+.+...+ +.+++.++++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~-~-~~~~G~~~~~~~g~-l~v~~~~~----~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--ID-L-PGPNGMAFDRPDGR-LYVADSGG----IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EE-S-SSEEEEEEECTTSE-EEEEETTC----EEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--Ee-c-CCCceEEEEccCCE-EEEEEcCc----eEEEecCCCcEEE
Confidence 578888 77777777788999999999986322 22 2 227777787 6654 44455554 3455666664433
Q ss_pred eecc-----CCceEEEEEEcCCCCEEEEEeecC--------CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE-
Q 007229 142 DFDG-----HSRRVLSCEFKPTRPFRIATCGED--------FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS- 207 (612)
Q Consensus 142 ~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~- 207 (612)
.... .......+++.|+|+ +.++.... |.|..++.. ++..... ..-...+.|+|+|+++.|+.
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeec
Confidence 3322 456789999999998 46665433 567777777 4543333 34556789999999997764
Q ss_pred EEcCCcEEEEecCCCCe-e---eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 208 VSSDRKGLIYDGKSGEK-I---GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
-+..+.|..+++..... + ..+.......+..-.+++..+|++.++....+.|.+++. .++.+..+...
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p-----~G~~~~~i~~p 223 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP-----DGKLLREIELP 223 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET-----TSCEEEEEE-S
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC-----CccEEEEEcCC
Confidence 45578888888864322 1 112111122235788999999998887778899999996 48888888766
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.99 E-value=1.3e-09 Score=63.53 Aligned_cols=39 Identities=26% Similarity=0.636 Sum_probs=36.6
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
+++++.+.+|.+.|++++|+|++++||+++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
No 306
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.99 E-value=2.9e-06 Score=78.81 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=123.9
Q ss_pred ccCCCEEEEec----------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 27 NPKTDTILYCN----------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 27 s~d~~~l~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
|||+++++... .+.+.|+|+++++...... ....+....|||||+++|... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 79999999843 3689999999987666433 377899999999999999995 67999999988754333
Q ss_pred eeeec----------------CCCeEEEEECCCCCEEEEEeCCCCe-eeEEEEEecCCceeeeeccCCceEEEEEEcCCC
Q 007229 97 EFKVL----------------SGRIDDLQWSPDGLRIVACGDGKGK-SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 97 ~~~~~----------------~~~i~~~~~s~~~~~l~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
+..+. -+.-..+-|||||++|+....+... ..+.+..+..... .--.+..+.+-.-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccCCCC
Confidence 33330 1123568899999999987654422 1122222221111 00123333332222
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeee-cc----cccccceEEEEECCCCCeEEEEE--cCC---cEEEEecCCCCeeeeee
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKL-SH----REHSNFVNCIRFSPDGSKLISVS--SDR---KGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~-~~----~~~~~~v~~~~~s~~~~~l~~~~--~dg---~i~vwd~~~~~~~~~~~ 229 (612)
.. .. .-.+.++|+.+++... .. ..-...+..+.|+++++.|+..- .+. .+.+.|..+++......
T Consensus 153 ~~-np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 153 DP-NP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp S--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred Cc-CC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 21 11 1135667887776532 11 23456688999999998444433 222 36677887766544332
Q ss_pred c-cCCccccEEEEEEe-cCCC-EEEEEeCCCcEEEEEe
Q 007229 230 S-EDGHHGSIYAVSWS-PDGK-KVLTVSADKSAKVWEI 264 (612)
Q Consensus 230 ~-~~~~~~~v~~i~~~-~~~~-~l~~~~~dg~i~iw~~ 264 (612)
. ..+--..-....|. +++. ++.....+|.-++|-+
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 1 11111122244444 5444 4444446676555555
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.6e-09 Score=91.34 Aligned_cols=139 Identities=12% Similarity=0.228 Sum_probs=112.1
Q ss_pred EEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc----eeeeccccccccee
Q 007229 466 IVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE----VKLNNMLFHTARIN 541 (612)
Q Consensus 466 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~ 541 (612)
++.+.+..+-+-++.++.. ..+. .++.|.++.|...++++..|..+|.|..+|++.+. -....+. |.+.|+
T Consensus 228 fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccc---cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 4445566788999988864 3444 56779999999989999999999999999998762 2223333 899999
Q ss_pred EEEecC-CCcEEEEeecCcEEEEEEccCCCcce---eeeecccccCeeeEEEe---cCceEEEccCCCeEEEEEecc
Q 007229 542 CLAWSP-SSTMVATGSIDTCVIIYEIGKPASSR---ITIKNAHLGGVYGVAFM---DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 542 ~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~h~~~v~~~~~~---~~~~l~s~~~d~~i~~w~~~~ 611 (612)
++..-. ++++|.+.+.+|+|++||.+. . ++ +....+|...-..+-+. .++.++++|+|...|||.++.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~-~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRA-T-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehh-h-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 998777 788999999999999999987 4 55 78889998877777666 456799999999999999874
No 308
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.5e-07 Score=85.49 Aligned_cols=309 Identities=15% Similarity=0.109 Sum_probs=175.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
|...|.=-+++..+++|+.|+.-|.+.+|+-..++.+.....+..+.+.....+++..++|+++..+ .+.++..+.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g---~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASG---RVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCc---eEEeehhhcc
Confidence 5566767778888999999999999999999998865544445555666777888877777777666 4555555532
Q ss_pred ce---ee--ee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECCCCCeEEE
Q 007229 138 TT---VG--DF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 138 ~~---~~--~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
.+ +. .+ ..|...|++++|++++. .+.+|...|.|..-.+.... ..+.+......|..+.+. ++ +|++
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLV 185 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLV 185 (726)
T ss_pred CCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehH
Confidence 21 11 11 34789999999999999 69999999999998877721 111122344567777665 23 3433
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccc-cEEEEEEecC----CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHG-SIYAVSWSPD----GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~i~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
++.- ...+++.+.+. +..+... ...+ .-...+|.|. .+-.+.++.-| .|+|..+ -.|+.++++.....
T Consensus 186 Stl~-r~~Lc~tE~et-i~QIG~k-~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead---~~G~V~~Thqfk~a 258 (726)
T KOG3621|consen 186 STLT-RCILCQTEAET-ITQIGKK-PRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD---FAGEVIKTHQFKDA 258 (726)
T ss_pred hhhh-hhheeecchhH-HHHhcCC-CcCCccccceEEeeccccCCCceEEEecCC-CceEEee---cceeEEEeeehhhh
Confidence 3322 23455555443 2222111 1111 1334556553 34455555554 7899874 45777777665432
Q ss_pred cccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 283 NAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
...... ..+.+-.+..+.........+.-....+.+.. ...+++-+.-| |+++|.++...
T Consensus 259 la~~p~-----------------p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~--~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 259 LARPPA-----------------PEIPIRSLESPNQRSLPSGTQHLSLSKSSTLH--SDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred hccCCC-----------------CcccCCCcCCccccCCCCCccccccceeEEee--cceEEEeecce-EEEEEeccceE
Confidence 111000 00000000000000001111111112222222 33444444434 77777776655
Q ss_pred eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCC
Q 007229 363 SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~ 400 (612)
..... ....|..++..++.++.-..|+.++...+.+.
T Consensus 319 ~l~se-~~~DI~dVs~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 319 YLWSE-GGHDILDVSHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred EEeec-CCCceeEEeecCceEEEEecCCceeEEEeehh
Confidence 54433 56677788888888888888887777666544
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=1.3e-05 Score=65.65 Aligned_cols=144 Identities=14% Similarity=0.008 Sum_probs=87.3
Q ss_pred EECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc
Q 007229 109 QWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE 188 (612)
Q Consensus 109 ~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 188 (612)
...+|.+.++..+.... .+...+..+|+.+.+-. -..++.+-+.- -|+ .++.|...|.+++.+.++|+....+..
T Consensus 17 VV~~dskT~v~igSHs~--~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSG--IVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred EEecCCceEEEEecCCc--eEEEecCCCCcEEeehh-hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhheeeeee
Confidence 34455555555544433 24444555776665432 22333333333 345 499999999999999999987776553
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEE
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKV 261 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i 261 (612)
-..-=......+++..+..++.|++.+..|..+..++..... ..+...+-+..| ++. |..+...|.+.-
T Consensus 92 ~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc---gG~~f~sP~i~~g~~s-ly~a~t~G~vla 161 (354)
T KOG4649|consen 92 LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC---GGGTFVSPVIAPGDGS-LYAAITAGAVLA 161 (354)
T ss_pred hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc---CCceeccceecCCCce-EEEEeccceEEE
Confidence 332222334567899999999999999999999999888732 222223344555 343 444444454433
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.1e-07 Score=83.53 Aligned_cols=297 Identities=15% Similarity=0.106 Sum_probs=186.0
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC---CeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCC
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP---FKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKS 221 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~ 221 (612)
|.+.|+.+.-.... .+.+++.||.++.|.-.. -+.+..+..|...|.+++.+.++.++.+.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeehhh--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 66777766555443 699999999999997544 3445557789999999999999998999777 99999999987
Q ss_pred CCeeeeeeccCCccccEEEEEEec-CC--C-EEEEE-eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSP-DG--K-KVLTV-SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~-~~--~-~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
-..+.-+.. ......+.|.. .| . .+++. -.+|.+.++|- ....+
T Consensus 86 ~DminmiKL----~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~----~~d~~----------------------- 134 (558)
T KOG0882|consen 86 FDMINMIKL----VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDG----FGDFC----------------------- 134 (558)
T ss_pred cchhhhccc----ccCCCceEEecCCCCeeeeEEeecccCCCcEEECC----cCCcC-----------------------
Confidence 666544421 11111222222 22 1 23332 34677888875 11110
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
.....-.-|..+|..+.+.+. ++.+++....|.|..|....... ... ..
T Consensus 135 ---------------------q~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~q--fPr---~~---- 183 (558)
T KOG0882|consen 135 ---------------------QDGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQ--FPR---TN---- 183 (558)
T ss_pred ---------------------ccceecccccCceEEEEeecc-ccceeeccccceeEeecCCCccc--Ccc---cc----
Confidence 111222348888888888832 77888888899999997664110 000 00
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
..|.+.... ........+...+++
T Consensus 184 ----------------l~~~~K~eT----------------------------------------dLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 184 ----------------LNFELKHET----------------------------------------DLYGFPKAKTEPTSF 207 (558)
T ss_pred ----------------ccccccccc----------------------------------------hhhcccccccCccce
Confidence 001111100 011111234457899
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccc------------------------------eeecccc-CceEEEEEcCC
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEE------------------------------MVLEKHR-GAITVIQYSPD 505 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~------------------------------~~~~~~~-~~i~~~~~s~~ 505 (612)
.|+|++..+.+-..|..|+++++.++++.+. +.++.|. ..-+.+.|...
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes 287 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES 287 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence 9999999999999999999999998865211 1111122 23456788889
Q ss_pred CcEEEEEcCCCeEEEEecCCcceeeecccc------------------cccc-------eeEEEecCCCcEEEEeecCcE
Q 007229 506 VSMFASADGNREAIVWDRVSKEVKLNNMLF------------------HTAR-------INCLAWSPSSTMVATGSIDTC 560 (612)
Q Consensus 506 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~~-------i~~~~~s~~~~~l~s~~~d~~ 560 (612)
+++|+.++-=| |++.++.++.+.. .+.. +... =..+.+.+|-.+++++-....
T Consensus 288 ~~flly~t~~g-ikvin~~tn~v~r-i~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~r 365 (558)
T KOG0882|consen 288 GNFLLYGTILG-IKVINLDTNTVVR-ILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNR 365 (558)
T ss_pred CCEEEeeccee-EEEEEeecCeEEE-EeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecce
Confidence 99999987754 8899998887642 1110 0000 012336677778888888888
Q ss_pred EEEE
Q 007229 561 VIIY 564 (612)
Q Consensus 561 i~iw 564 (612)
++++
T Consensus 366 fylf 369 (558)
T KOG0882|consen 366 FYLF 369 (558)
T ss_pred EEEE
Confidence 9988
No 311
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.91 E-value=4e-06 Score=73.25 Aligned_cols=278 Identities=13% Similarity=0.108 Sum_probs=145.0
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCeeeeeeccCCccc---
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKIGEFSSEDGHHG--- 236 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~--- 236 (612)
+.+.++|..+++.+-.+.. +-.-.+..+||++.+++++. .-.|.+||..+-....++..+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4689999999887766543 22334668999998887542 34588999999988887755433221
Q ss_pred -cEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 237 -SIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 237 -~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
....++++.|++++++... ..+|.+-|+ ..++.+..+..+.+ .......+..+...+.||.+....+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl----~~~kvv~ei~~PGC------~~iyP~~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDL----AAKKVVGEIDTPGC------WLIYPSGNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEET----TTTEEEEEEEGTSE------EEEEEEETTEEEEEETTSCEEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEEC----CCCceeeeecCCCE------EEEEecCCCceEEEecCCceEEEEE
Confidence 2234577788887776543 356788888 77777777665531 1111111333444444444444443
Q ss_pred CCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE-EEE--eeccEEEEecCCC
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK-CLA--AVEEVIFTAGFDN 390 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~-~~~--~~~~~l~~~~~~~ 390 (612)
....+.... +. . .|.+ ...++. .-. ..++.++-.+.+|
T Consensus 165 d~~Gk~~~~---~t----~-~F~~-------------------------------~~dp~f~~~~~~~~~~~~~F~Sy~G 205 (342)
T PF06433_consen 165 DADGKEAQK---ST----K-VFDP-------------------------------DDDPLFEHPAYSRDGGRLYFVSYEG 205 (342)
T ss_dssp TSTSSEEEE---EE----E-ESST-------------------------------TTS-B-S--EEETTTTEEEEEBTTS
T ss_pred CCCCCEeEe---ec----c-ccCC-------------------------------CCcccccccceECCCCeEEEEecCC
Confidence 332221100 00 0 0110 011111 111 1234455566777
Q ss_pred eEEEEecCCCCCCccceeccCC-CcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEe
Q 007229 391 KVWRVPLCEGECGDAEHIDVGS-QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG 469 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 469 (612)
.++-.++............... ....-.+.|.| -.-+++++..+.|++.-
T Consensus 206 ~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG-----------------------------~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 206 NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG-----------------------------WQLIAYHAASGRLYVLM 256 (342)
T ss_dssp EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S-----------------------------SS-EEEETTTTEEEEEE
T ss_pred EEEEEeccCCcccccCcccccCccccccCcCCcc-----------------------------eeeeeeccccCeEEEEe
Confidence 7777666655422111111100 00011122222 23356665554444432
Q ss_pred c--------CC--eEEEEEccCcccccceeeccccCceEEEEEcCCCc-EEEE-EcCCCeEEEEecCCcceee
Q 007229 470 Q--------NG--KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS-MFAS-ADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 470 ~--------dg--~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~-~~~d~~i~iwd~~~~~~~~ 530 (612)
. |+ .|.+||+.+++......+. .++.+|+.+.+.+ +|.+ ...++.+.+||..+++.+.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 1 11 5888899888874333333 3688999999765 5544 4568999999999998864
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=1.7e-06 Score=76.02 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=140.0
Q ss_pred CCeEEEEeCCCCeeeeccccc--ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC
Q 007229 169 DFLVNFYEGPPFKFKLSHREH--SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
+|.|..||..+++.+....-. .....+. ..+++..+++++.++.+..||..+|+.+............ .. .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~-~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----PV-VD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----EE-EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----ee-ec
Confidence 688999999999998876431 1222221 2335667888889999999999999998887542222222 12 23
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeee-eccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTF-ASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
+..+++++.++.+..+|. .+++.+-.. ..................++.++++..++.+..+|+.+....... ..
T Consensus 76 ~~~v~v~~~~~~l~~~d~----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~ 150 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDA----KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY-PV 150 (238)
T ss_dssp TTEEEEEETTSEEEEEET----TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE-ES
T ss_pred ccccccccceeeeEeccc----CCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe-ec
Confidence 455677778889999998 899988874 333211111222333344888999999999999997765543322 22
Q ss_pred cccc----------eeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE-EEeeccEEEEecCCCeEEE
Q 007229 326 HVKN----------VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC-LAAVEEVIFTAGFDNKVWR 394 (612)
Q Consensus 326 ~~~~----------v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~i~~ 394 (612)
.... +..-.... +..++.+..++.+..+|..+++... ... ...+.. ....++.++..+.++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~~~~~d~~tg~~~w-~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS--DGRVYVSSGDGRVVAVDLATGEKLW-SKP-ISGIYSLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC--TTEEEEECCTSSEEEEETTTTEEEE-EEC-SS-ECECEECCCTEEEEEETTTEEEE
T ss_pred CCCCCCcceeeecccccceEEE--CCEEEEEcCCCeEEEEECCCCCEEE-Eec-CCCccCCceeeCCEEEEEeCCCEEEE
Confidence 2211 11111222 3477777777764444999998663 322 333443 5558888888889999999
Q ss_pred EecCCCCC
Q 007229 395 VPLCEGEC 402 (612)
Q Consensus 395 ~~~~~~~~ 402 (612)
||+.+++.
T Consensus 227 ~d~~tG~~ 234 (238)
T PF13360_consen 227 LDLKTGKV 234 (238)
T ss_dssp EETTTTEE
T ss_pred EECCCCCE
Confidence 99998763
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.90 E-value=8.3e-06 Score=70.43 Aligned_cols=252 Identities=15% Similarity=0.172 Sum_probs=155.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceE--EEEEEcCCCCEEEEE----eecCCeEEEEeC
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRV--LSCEFKPTRPFRIAT----CGEDFLVNFYEG 177 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~----~~~d~~i~~wd~ 177 (612)
.-..++.+|+....++.....+. +..+++..+++....+....+.- -.-.|||||+++++| ....|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~-~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGT-FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCc-EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 34567888865555555544443 67788888888887765544332 246899999964444 234689999999
Q ss_pred C-CCeeeecccccccceEEEEECCCCCeEEEEE------------------cCCcEEEEecCCCCeeeeeecc-CCcccc
Q 007229 178 P-PFKFKLSHREHSNFVNCIRFSPDGSKLISVS------------------SDRKGLIYDGKSGEKIGEFSSE-DGHHGS 237 (612)
Q Consensus 178 ~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~-~~~~~~ 237 (612)
. ..+.+..+..|.-....+.+.|||+.|+++- .+.++...|..+|+.+.+.... ..|.-.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 6777777877777778889999998888762 2345667778888887775331 246678
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
|..+++.++|..++..-..|.-. ....++..+.. ++.+..+...
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~--------~~~PLva~~~~-------------------------g~~~~~~~~p--- 208 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPG--------DAPPLVALHRR-------------------------GGALRLLPAP--- 208 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCC--------ccCCeEEEEcC-------------------------CCcceeccCC---
Confidence 99999999887555544333200 01111111111 1111111111
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
......-...+-+++++.......+|+-..+.+.+||..++....... -..+..++...+-++..+..|.+....
T Consensus 209 --~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 209 --EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDGFLVSSGQGQLIRLS 283 (305)
T ss_pred --hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCceEEeCCCccEEEcc
Confidence 112233456778888884333455677788999999999998876653 344556666333355555555544433
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.87 E-value=2.8e-05 Score=72.08 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=68.4
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
..++.+..+.+++++|+.+.|+.|+.||.|.+||...+.- ......-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 4456888999999999999999999999999999876632 222344567899999999999999999999999987
Q ss_pred Ccceeee
Q 007229 525 SKEVKLN 531 (612)
Q Consensus 525 ~~~~~~~ 531 (612)
-......
T Consensus 330 Lspi~~q 336 (545)
T PF11768_consen 330 LSPIKMQ 336 (545)
T ss_pred cCcccee
Confidence 6654433
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.87 E-value=1.9e-06 Score=85.96 Aligned_cols=113 Identities=18% Similarity=0.296 Sum_probs=77.9
Q ss_pred EEEEEccCCCeEEEEe-----cCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc---CCCeEEEEecCC
Q 007229 454 TACAIAPDGSEAIVGG-----QNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD---GNREAIVWDRVS 525 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~iwd~~~ 525 (612)
+++.|--||+++|+.. ....|++||.+ +.+ ...-....+.-.+++|-|.|..+|+-. .|+.|.++.-..
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 5678888999998833 22689999987 554 222223334557899999999998763 456799997544
Q ss_pred ccee--eecccccccceeEEEecCCCcEEEE---eecCcEEEEEEccCC
Q 007229 526 KEVK--LNNMLFHTARINCLAWSPSSTMVAT---GSIDTCVIIYEIGKP 569 (612)
Q Consensus 526 ~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s---~~~d~~i~iwd~~~~ 569 (612)
-+.- ...+.....++..++|+.++..||+ ......|++|-+.+-
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 3221 0112223445999999999999998 555666999998773
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.3e-07 Score=83.08 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=170.1
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCC---CceeeEeccCCCceEEEEECCCCCEEEEeeC-cCeEEEeecCCC
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDK---PLHVEFYGEHGYPVTVARYSPNGEWIASADV-SGSVRIWGTHNG 91 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-d~~i~iwd~~~~ 91 (612)
||..|+.+.-+ ..+++..++ +|.+..|--.. -+.+..+..|-..|.+++.|-||.+++|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 45455554444 455777777 99999997543 1334446779999999999999999999777 999999999876
Q ss_pred cee-eeeeeecCCCeEEEEECC-CCCEEEEEe-CCCCeeeEEEEEec---CC-ceeeeeccCCceEEEEEEcCCCCEEEE
Q 007229 92 FVL-KNEFKVLSGRIDDLQWSP-DGLRIVACG-DGKGKSFVRAFMWD---SG-TTVGDFDGHSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 92 ~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~~~~~~~i~i~~~~---~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~ 164 (612)
..+ ...+....+.+..+ .+| |-..+++.+ .+.+ .+..+| .. +....-.-|..+|..+.++|.+. .++
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg----~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~v 160 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSG----KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAV 160 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCC----CcEEECCcCCcCccceecccccCceEEEEeecccc-cee
Confidence 632 11112222222222 222 222333333 3332 355555 22 23344456999999999999998 599
Q ss_pred EeecCCeEEEEeCCC------Ceeeecc---------cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 165 TCGEDFLVNFYEGPP------FKFKLSH---------REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~------~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
+....|.|.-|..+. .+....+ ........++.|+|++..+.+-..|..|++++..+|+.++.+.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 999999999998773 1111111 1233567899999999999999999999999999988766552
Q ss_pred ccC-----------------------------Cc-cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 230 SED-----------------------------GH-HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 230 ~~~-----------------------------~~-~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
... .| ...-..+.|...+++|+.++-=| |++.++ .+.++.+.+..
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~----~tn~v~ri~gk 315 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINL----DTNTVVRILGK 315 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEe----ecCeEEEEecc
Confidence 100 11 12334677888899999887665 899999 78888776654
Q ss_pred c
Q 007229 280 S 280 (612)
Q Consensus 280 ~ 280 (612)
.
T Consensus 316 ~ 316 (558)
T KOG0882|consen 316 D 316 (558)
T ss_pred c
Confidence 3
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.84 E-value=5.6e-06 Score=76.88 Aligned_cols=234 Identities=16% Similarity=0.128 Sum_probs=132.4
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec-c-------C---------CCceEEEEECCCCCEEEEeeCc
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG-E-------H---------GYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~-~-------h---------~~~v~~~~~s~d~~~las~~~d 80 (612)
...+....|||||+.||+..++.|++++..+++..+.-. | - -+.-.++-|||||++||....|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 457889999999999999999999999998775544211 2 0 1123578899999999875422
Q ss_pred C------------------------------------eEEEeecCCCceeeeeee----ecCCCeEEEEECCCCCEEEEE
Q 007229 81 G------------------------------------SVRIWGTHNGFVLKNEFK----VLSGRIDDLQWSPDGLRIVAC 120 (612)
Q Consensus 81 ~------------------------------------~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~ 120 (612)
. .+.|+|+.+++....... ....-+..+.|+++++.|+..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 1 144556655543111111 123357889999999855444
Q ss_pred e--CCCCeeeEEEEEecCCceeeeecc-CC---ceEEEEEEc-CCCCEEEEEeecCCeE--EEEeCCCCeeeeccccccc
Q 007229 121 G--DGKGKSFVRAFMWDSGTTVGDFDG-HS---RRVLSCEFK-PTRPFRIATCGEDFLV--NFYEGPPFKFKLSHREHSN 191 (612)
Q Consensus 121 ~--~~~~~~~i~i~~~~~~~~~~~~~~-~~---~~v~~~~~~-~~~~~~l~~~~~d~~i--~~wd~~~~~~~~~~~~~~~ 191 (612)
- .......+.+++..+++....... .. ..-....|. +++..++.....+|.- .+.+...+... .+....-
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~ 280 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDW 280 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCce
Confidence 3 333333344444445443322211 11 222345554 7776666666677744 44566666544 4444455
Q ss_pred ceE-EEEECCCCCeEEEEEcC-----CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 192 FVN-CIRFSPDGSKLISVSSD-----RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 192 ~v~-~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
.|. -+.++++++.|+..+.. ..+..-++..+..+..+....+. -..+.|+|++++++....
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~---~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD---HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST---TEEEEE-TTSSEEEEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC---ceEEEECCCCCEEEEEEc
Confidence 564 47788888766544432 24555555523455555322111 168999999998876543
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1e-06 Score=84.42 Aligned_cols=225 Identities=12% Similarity=0.125 Sum_probs=140.8
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccc-eeEEEEEecCCcEEEEEecCCc-----EEEEEcCCce
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKN-VSTLTALKISQQTILSSSYDGA-----IIKWIRGVGY 361 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~ 361 (612)
.+.++..+.+.++.|+.+|.|.+++-. ......++.+... +..+ +......+|++-+.|+. +++|+++...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 556666678899999999999988722 2333455556555 3333 33222457777666653 6667665432
Q ss_pred eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecc
Q 007229 362 SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
.... ..|+ +..+++....+
T Consensus 104 ~n~s-------P~c~-------------~~~ri~~~~np----------------------------------------- 122 (933)
T KOG2114|consen 104 KNNS-------PQCL-------------YEHRIFTIKNP----------------------------------------- 122 (933)
T ss_pred CCCC-------ccee-------------eeeeeeccCCC-----------------------------------------
Confidence 1000 0000 01111111111
Q ss_pred cceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEcc--CcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 442 KVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSIS--GNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 442 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
..+.++.+++++.+-+.+|+|..||.|..+.=+ ..+-..........++|+.+++..+++.++.+..-..|.
T Consensus 123 ------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~ 196 (933)
T KOG2114|consen 123 ------TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVM 196 (933)
T ss_pred ------CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeE
Confidence 123578899999999999999999999998532 111111233344567999999999988743333446799
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCe
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGV 584 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v 584 (612)
+|.+....+....+..|....+|-.|++....+++++. ..+.+|+.+..+ .+...-.+|....
T Consensus 197 ~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~-~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 197 LYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG-PCFAFEVGEKKEM 259 (933)
T ss_pred EEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc-eeeeecCCCeEEE
Confidence 99998666444557778899999999976654666654 459999998755 5555444666543
No 319
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.83 E-value=8.5e-08 Score=89.17 Aligned_cols=187 Identities=13% Similarity=0.133 Sum_probs=121.9
Q ss_pred CceeEEEEccCCCEEEEec----C-CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcCe--EEEeecCC
Q 007229 19 GRGILISGNPKTDTILYCN----G-RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGS--VRIWGTHN 90 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~----~-~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~~--i~iwd~~~ 90 (612)
..+..-+|+|+++.+++.. . ..++++++++++....+. -.+.-...+|||||+.||.+ ..||. |.+.|+.+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3556678999999999885 2 369999999887766544 34444577999999988865 45565 55667666
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
+. +. .+..-.+.-..-.|+|||++++..++.++...|.+..++.+.. ..+......-..-.++|||++++.....+|
T Consensus 272 ~~-~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 272 KN-LP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred Cc-ce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence 65 32 3444444444778999999999999888764444444444433 444333333337789999997555554445
Q ss_pred e--EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 171 L--VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 171 ~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
. |.+.|+.++.....+ .+......-.|.|+++.+...+.
T Consensus 349 ~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 349 QWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence 4 666676666543222 23333445567888887766544
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.82 E-value=1.6e-06 Score=76.24 Aligned_cols=221 Identities=14% Similarity=0.117 Sum_probs=135.9
Q ss_pred EEEEEecCCceeeeecc---CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE
Q 007229 129 VRAFMWDSGTTVGDFDG---HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 205 (612)
+..++..+|+.+....- ....+ +. ..++++ .+++++.++.+..||..+|+.+..... ...+.... ..++..+
T Consensus 5 l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGG-RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp EEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETT-EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCC-EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 45566667777777643 22222 11 222444 477778999999999999998877654 22221111 2235567
Q ss_pred EEEEcCCcEEEEecCCCCeeeee-eccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEF-SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
++++.++.++.+|..+|+.+... .................++..++.+..++.|..+|+ .+++.+-.........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~----~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP----KTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET----TTTEEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec----CCCcEEEEeecCCCCC
Confidence 77788899999999999998884 211001111222233334777888888999999999 8999988887743221
Q ss_pred c------ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 285 V------EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 285 ~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
. ......+...++.+++...++.+..+|........ ... ......+. ...+..++.++.++.+..||..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w-~~~--~~~~~~~~--~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLW-SKP--ISGIYSLP--SVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEE-EEC--SS-ECECE--ECCCTEEEEEETTTEEEEEETT
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEE-Eec--CCCccCCc--eeeCCEEEEEeCCCEEEEEECC
Confidence 1 11223344445688888888864444877665332 211 22222211 2227788877799999999999
Q ss_pred Cceee
Q 007229 359 VGYSS 363 (612)
Q Consensus 359 ~~~~~ 363 (612)
+++..
T Consensus 231 tG~~~ 235 (238)
T PF13360_consen 231 TGKVV 235 (238)
T ss_dssp TTEEE
T ss_pred CCCEE
Confidence 98764
No 321
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.81 E-value=0.0002 Score=70.66 Aligned_cols=563 Identities=12% Similarity=0.070 Sum_probs=285.0
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCce-------eeEeccCCCceEEEEECCC----CCEEEEee---CcCeE
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLH-------VEFYGEHGYPVTVARYSPN----GEWIASAD---VSGSV 83 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~-------~~~~~~h~~~v~~~~~s~d----~~~las~~---~d~~i 83 (612)
-..|+.+-++| .+.+|+ +.+ .+-.+.+..- +..+. .-++|..++.-.+ +..++|++ .||++
T Consensus 308 iassi~~L~ng-~lFvGS~~gdS-qLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSL 384 (1096)
T KOG1897|consen 308 IASSINYLDNG-VLFVGSRFGDS-QLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSL 384 (1096)
T ss_pred hhhhhhcccCc-eEEEeccCCce-eeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcE
Confidence 44566677777 455555 222 2233322111 11122 3457777776552 23455543 78999
Q ss_pred EEeecCCCce--eeeeeeecCCCeEEEE--ECC--CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC
Q 007229 84 RIWGTHNGFV--LKNEFKVLSGRIDDLQ--WSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP 157 (612)
Q Consensus 84 ~iwd~~~~~~--~~~~~~~~~~~i~~~~--~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (612)
++....-+-. -...+.+ -..+..+. +.+ |. +|+.+--+.. ++......-......+.......+..|.
T Consensus 385 RiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~eT----rvl~i~~e~ee~~~~gf~~~~~Tif~S~ 458 (1096)
T KOG1897|consen 385 RIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFISET----RVLNISEEVEETEDPGFSTDEQTIFCST 458 (1096)
T ss_pred EEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEeccce----EEEEEccceEEeccccccccCceEEEEc
Confidence 9986543321 1112222 33455555 333 33 5544433332 2333332211111122222222222222
Q ss_pred -CCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 158 -TRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 158 -~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
.++. ++-... ..||+++-. .....+. ..+.++....+.+...++.++.++.+...++..+...... ......
T Consensus 459 i~g~~-lvQvTs-~~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~--~~~~e~ 531 (1096)
T KOG1897|consen 459 INGNQ-LVQVTS-NSIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVS--HKEFEY 531 (1096)
T ss_pred cCCce-EEEEec-ccEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeee--eheecc
Confidence 1221 222222 246666644 1222232 2334455555556667777777777777777666522222 124567
Q ss_pred cEEEEEEecC--C----CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEE
Q 007229 237 SIYAVSWSPD--G----KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIIS 309 (612)
Q Consensus 237 ~v~~i~~~~~--~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 309 (612)
.|.|+.++|- + +++++|..+..+.+.-.. .+...+..............+...... ..++.++..+|.+.
T Consensus 532 evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~---pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 532 EVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL---PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred eeEEEecccCCCCCCcceEEEEEeecceEEEEEEC---CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 8899999973 2 267777776665554441 333333333333322333333333333 78899999999998
Q ss_pred EEEcCCCCCCceeec---CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-----ecc
Q 007229 310 IFSASNLDKAPLSFS---GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-----VEE 381 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-----~~~ 381 (612)
.|.+....-.....+ --..++.--.|.......++++ .|.-..+|..+..-...... -..+..++. -++
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-sdrP~viY~~n~kLv~spls--~kev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL-SDRPTVIYSSNGKLVYSPLS--LKEVNHMCPFNSDAYPD 685 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe-CCCCEEEEecCCcEEEeccc--hHHhhhhcccccccCCc
Confidence 887654332222111 1223444444443223444433 34444444433222211111 111111111 123
Q ss_pred EEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEee-----------c---cEEEee--ccccee
Q 007229 382 VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE-----------S---GVILLD--SLKVMS 445 (612)
Q Consensus 382 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~--~~~~~~ 445 (612)
.++.+. .+.+++..+..-+......+.....++.+++.+...-+.+.... . .+.+++ +.+.+.
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 333333 33445554444433334446666677777776632222221111 0 122333 111111
Q ss_pred eec-----ccceEEEEEEccC-CCeEEEEe----------cCCeEEEEEccC-cccccceeeccccCceEEEEEcCCCcE
Q 007229 446 KID-----LGFTVTACAIAPD-GSEAIVGG----------QNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSPDVSM 508 (612)
Q Consensus 446 ~~~-----~~~~i~~~~~s~~-~~~l~~~~----------~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (612)
..+ ....+.++.|..| +.++++|+ ..|.|.+|.+.. +++....... -++.+.++.. -+|++
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~-fngkl 842 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVE-FNGKL 842 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhh-hCCeE
Confidence 111 2234555668877 78888886 358899998877 4432222111 2344444432 26777
Q ss_pred EEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeee-cccccCeeeE
Q 007229 509 FASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIK-NAHLGGVYGV 587 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~ 587 (612)
||.- +..|++|++.+.+.+ ..-..|..++..+...-.|..+++|..-+.+.+-..+.........- ..+....+++
T Consensus 843 lA~I--n~~vrLye~t~~~eL-r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtav 919 (1096)
T KOG1897|consen 843 LAGI--NQSVRLYEWTTEREL-RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAV 919 (1096)
T ss_pred EEec--CcEEEEEEcccccee-hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeE
Confidence 7765 458999999988665 44555888999999999999999999888888877765221232222 2466788888
Q ss_pred EEecCceEEEccCCCeEEEEEec
Q 007229 588 AFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 588 ~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+.++...+-+..+|.+.+=..+
T Consensus 920 eil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 920 EILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEecCceEEeecccccEEEEEec
Confidence 88866666666778887776554
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.81 E-value=1.3e-08 Score=59.33 Aligned_cols=39 Identities=41% Similarity=0.455 Sum_probs=36.5
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
++++.++.+|..+|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.79 E-value=5.9e-05 Score=66.13 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=107.1
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeecCCCceeeeeeeecC------
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGTHNGFVLKNEFKVLS------ 102 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~------ 102 (612)
+.++|+|.++++.+-.+..- -.-.+.+|||++.+.+++ ..-.|.+||.++..... .+.-..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~-EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG-EIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE-EEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc-eEecCCcchhee
Confidence 58999999999887765532 223467899999988753 34469999999987422 222111
Q ss_pred -CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC-CC
Q 007229 103 -GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PF 180 (612)
Q Consensus 103 -~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~ 180 (612)
.....+++|.||+++++.-..... .+.|.+...++.+..+..... .-.-|.++..+.+-+.||.+.-..+. .|
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~-SVtVVDl~~~kvv~ei~~PGC----~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPAT-SVTVVDLAAKKVVGEIDTPGC----WLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSE-EEEEEETTTTEEEEEEEGTSE----EEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred cccccceEEccCCcEEEEEccCCCC-eEEEEECCCCceeeeecCCCE----EEEEecCCCceEEEecCCceEEEEECCCC
Confidence 123456899999999887655544 577778778887776653321 11122222247777788888877766 44
Q ss_pred eeeec----ccccccc-eEEEEECCCCCeEEEEEcCCcEEEEecCCCC
Q 007229 181 KFKLS----HREHSNF-VNCIRFSPDGSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 181 ~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
+.... +....++ +..-++...+..++..+.+|.|+--|+....
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 44322 1111122 2233444455556667889999998887655
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=8.3e-09 Score=98.30 Aligned_cols=212 Identities=14% Similarity=0.106 Sum_probs=154.2
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--CeEEEeecCCCce
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFV 93 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~ 93 (612)
+...-+|++||.+.+.|++|. .|.|.++++.+|........|...|+.+.-|.||..+.+.+.- .-..+|++.+...
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 456788999999999999998 8999999999999999999999999999999999988776533 2478999987443
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee-c---cCCceEEEEEEcCCCCEEEEEeecC
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-D---GHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
.++.+. .-.++.|+...+.-+.+.... ...+|+.+++.++.++ . +....-.+..|+|++.. ++ .|
T Consensus 1180 ~~Hsf~----ed~~vkFsn~~q~r~~gt~~d---~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L-Il---nd 1248 (1516)
T KOG1832|consen 1180 PRHSFD----EDKAVKFSNSLQFRALGTEAD---DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL-IL---ND 1248 (1516)
T ss_pred cccccc----ccceeehhhhHHHHHhccccc---ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce-Ee---eC
Confidence 433333 456788887655444444333 2578888888877763 2 22233377889999983 43 34
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
| .+||++..+.++.+...+..+. -.|+|.|..++.-+ -|||+++.+.+...+.. .-..+.|+..|..
T Consensus 1249 G--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L-----dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL-----DQCAVTFNSTGDV 1315 (1516)
T ss_pred c--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcCccc-----cceEEEeccCccc
Confidence 4 5799998887777665543333 35999999888754 48999998888777321 2346778887875
Q ss_pred EEE
Q 007229 250 VLT 252 (612)
Q Consensus 250 l~~ 252 (612)
+..
T Consensus 1316 mYa 1318 (1516)
T KOG1832|consen 1316 MYA 1318 (1516)
T ss_pred hhh
Confidence 543
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=8.6e-07 Score=76.98 Aligned_cols=237 Identities=10% Similarity=0.005 Sum_probs=146.0
Q ss_pred CCCceeEEEEccCCC-EEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCce
Q 007229 17 ERGRGILISGNPKTD-TILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~ 93 (612)
+...|..++|||..+ ++..++ ++.|.|.|+++......+..| ..+.+++|.-|. .+|..|...|.|.|||+...+.
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 345788999999988 666666 899999999999888888877 889999999865 5777888999999999987765
Q ss_pred eeeeeee--cCCCeEEEEE------CCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec-cCCceEEEEEEcCCCCEE
Q 007229 94 LKNEFKV--LSGRIDDLQW------SPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD-GHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 94 ~~~~~~~--~~~~i~~~~~------s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 162 (612)
....+.+ ...+|..++. .+.|..|+....+- ..|... .+.....++ +..+...++...+..+.+
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l-----~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL-----QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHL 345 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehhh-----hhhhhhccccCCCcccccCCCcceeeeeecCccceE
Confidence 3333332 1224444333 33455555544432 233222 222222222 235666777777766767
Q ss_pred EEEeecCCe------EEE-EeCCCCeeeecc-ccc----cc---ceEEEEECCCCCeEEE-EEcCCcEEEEecCCCCeee
Q 007229 163 IATCGEDFL------VNF-YEGPPFKFKLSH-REH----SN---FVNCIRFSPDGSKLIS-VSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 163 l~~~~~d~~------i~~-wd~~~~~~~~~~-~~~----~~---~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~ 226 (612)
|++.-.+.. |-. -|...|..+... .++ .. .-..+.-.++.++++. +...+++.+||+.+.+.++
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 777655311 100 111222221110 011 00 0011222345565554 4456889999999999999
Q ss_pred eeeccCCccccEEEEEEec-C-CCEEEEEeCCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSP-D-GKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~-~-~~~l~~~~~dg~i~iw~~ 264 (612)
.+ ....+|..++... + +.+|++- .|..+++|..
T Consensus 426 ~l----~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 426 TL----ALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred ec----ccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 99 6668899888765 3 3455555 4567888875
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=6e-06 Score=79.36 Aligned_cols=224 Identities=15% Similarity=0.177 Sum_probs=137.2
Q ss_pred EECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc-EEEEEEecCCCEEEEEeCCCc-----EEEEEeecCCCC
Q 007229 197 RFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS-IYAVSWSPDGKKVLTVSADKS-----AKVWEILEDGSG 270 (612)
Q Consensus 197 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~dg~-----i~iw~~~~~~~~ 270 (612)
+|++.+..++.|+.+|.|.+.+ +.-+.+..+. .+... +..+....+..+|++.++|+. +++|++.....+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fq---a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQ---AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehhe---ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4678888999999999998887 3444445552 45555 444444444478888887754 899998432111
Q ss_pred --CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEec
Q 007229 271 --GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 271 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 348 (612)
..++.... ++. ...+....++..++.+.. -+.++.|..
T Consensus 106 ~sP~c~~~~r-------------------------------i~~--------~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~ 145 (933)
T KOG2114|consen 106 NSPQCLYEHR-------------------------------IFT--------IKNPTNPSPASSLAVSED-LKTIVCGFT 145 (933)
T ss_pred CCcceeeeee-------------------------------eec--------cCCCCCCCcceEEEEEcc-ccEEEEEec
Confidence 12221111 111 011123456777777722 788899999
Q ss_pred CCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEE
Q 007229 349 DGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELAL 428 (612)
Q Consensus 349 dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (612)
+|.|..+.-+-.+. ...
T Consensus 146 nG~V~~~~GDi~RD---------------------------rgs------------------------------------ 162 (933)
T KOG2114|consen 146 NGLVICYKGDILRD---------------------------RGS------------------------------------ 162 (933)
T ss_pred CcEEEEEcCcchhc---------------------------ccc------------------------------------
Confidence 99988873221100 000
Q ss_pred EEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcE
Q 007229 429 VSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSM 508 (612)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (612)
+.......+.+|+.+++..+++.++....-..|.+|.+.+.. .....+..|..+..|-.|++....
T Consensus 163 -------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q 228 (933)
T KOG2114|consen 163 -------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ 228 (933)
T ss_pred -------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc
Confidence 001111234679999999998873333344579999998555 445568888899999999986664
Q ss_pred EEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 509 FASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
+++++. ..+.+|+..........-.+|......
T Consensus 229 fIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 229 FICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEEecC-ceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 555544 469999988776654433355554433
No 327
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=3.7e-08 Score=83.31 Aligned_cols=161 Identities=13% Similarity=0.058 Sum_probs=115.4
Q ss_pred EEEEeeccEEEee-cccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc--ccceeeccccCceEEEEEc
Q 007229 427 ALVSTESGVILLD-SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL--TEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 427 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~i~~~~~s 503 (612)
+.++.+.++.+.+ .....+.+..+..|.++.|...+.++..|+.+|.|..+|++.+.. ......--|...|+++..-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 4455556666665 444455566777888999999899999999999999999986521 0012233488899998877
Q ss_pred C-CCcEEEEEcCCCeEEEEecCCcce---eeecccccccceeEEE--ecCCCcEEEEeecCcEEEEEEccCCCcceeeee
Q 007229 504 P-DVSMFASADGNREAIVWDRVSKEV---KLNNMLFHTARINCLA--WSPSSTMVATGSIDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 504 ~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~--~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 577 (612)
. ++++|++.+.+|+|++||++.-++ + ..+.+|...-..+- ..+....+++++.|...|||.++. + .++.++
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V-~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-g-hLl~ti 384 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSV-MQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-G-HLLCTI 384 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccce-eeeecccccccccccccccccceEEEccCeeEEEEEeccc-C-ceeecc
Confidence 6 888999999999999999987766 4 45666765444333 345666888899999999999998 5 555554
Q ss_pred cccc----cCeeeEEEe
Q 007229 578 NAHL----GGVYGVAFM 590 (612)
Q Consensus 578 ~~h~----~~v~~~~~~ 590 (612)
.-.. ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 4222 245566665
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.1e-06 Score=76.26 Aligned_cols=252 Identities=8% Similarity=-0.055 Sum_probs=141.2
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCC-CeEEEEEcCCcEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGL 215 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 215 (612)
-+...-+.+|...|..++|+|..+-++..++.+..|++.|+++......+..+ ..+++++|.-|. ++++.|...|.|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 34455677888999999999998877999999999999999999998888777 789999998765 4677777899999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEe------cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWS------PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
|||++..+-.......+....+|..++.- +.+.+++.... .+..|++....+...++.....+ ...
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~p------G~c 333 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPP------GIC 333 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCC------cce
Confidence 99998765432221111233445544432 23444444433 35677764332322222222211 112
Q ss_pred eeeecc--CCEEEEEEcCC-------EEEEE-EcCCCCCCceeecCccc----ce--eEEEEEecCCc-EEEEEecCCcE
Q 007229 290 VGCLWQ--NDHLITVSLGG-------IISIF-SASNLDKAPLSFSGHVK----NV--STLTALKISQQ-TILSSSYDGAI 352 (612)
Q Consensus 290 ~~~~~~--~~~~~~~~~~~-------~i~~~-~~~~~~~~~~~~~~~~~----~v--~~~~~~~~~~~-~l~~~~~dg~i 352 (612)
..+... .+.+++....+ .+..+ |...+......-+++.+ ++ +...+...+.+ .+..+...+.+
T Consensus 334 ismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~l 413 (463)
T KOG1645|consen 334 ISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNEL 413 (463)
T ss_pred eeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCccee
Confidence 222221 12222221110 00000 00011111111111100 00 01111111133 34456677899
Q ss_pred EEEEcCCceeeeeceecccceEEEEe---eccEEEEecCCCeEEEEecC
Q 007229 353 IKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 353 ~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~ 398 (612)
.+||..+........ .+.++..+.+ ++.-++..-.|..++++..+
T Consensus 414 il~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 414 ILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EEeccchhheeeecc-cCcceeecceeecCCcchhhheecceEEEEecC
Confidence 999999998888776 5678888777 44445555556677776543
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.73 E-value=9.1e-07 Score=82.45 Aligned_cols=207 Identities=17% Similarity=0.170 Sum_probs=135.9
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee---Cc-CeEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD---VS-GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
..+.+-|.+ +...+.+..-...+..-+|+|+++.++-.+ .. ..+.++|+.+++.. ......+.-...+|+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--~i~~~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--VILNFNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc--eeeccCCccCCccCCCCC
Confidence 455566666 555565666677888899999999877553 23 46999999988742 222245556677999999
Q ss_pred CEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE--eCCCCeeeecccccc
Q 007229 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHREHS 190 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w--d~~~~~~~~~~~~~~ 190 (612)
++|+.+....+. ..||..+ .+. +..+..-.+.-..=.|+|||++++.+.+..|.-.|| +.+..... .+....
T Consensus 250 ~~l~f~~~rdg~--~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~ 325 (425)
T COG0823 250 SKLAFSSSRDGS--PDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSG 325 (425)
T ss_pred CEEEEEECCCCC--ccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccC
Confidence 999998877665 4555555 444 444554444445778999999888887777755555 55555432 222222
Q ss_pred cceEEEEECCCCCeEEEEEcC-Cc--EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSD-RK--GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~d-g~--i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 256 (612)
..-..-.|+|||++++..+.. |. |.+.|+.++.....+ ........-.|.++++.+...+..
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l----t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL----TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc----cccccCCCCCcCCCCceEEEeccC
Confidence 222267899999999887753 44 667777666655554 334444456788888877665543
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.69 E-value=6e-06 Score=78.42 Aligned_cols=221 Identities=10% Similarity=-0.018 Sum_probs=133.1
Q ss_pred EEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC----eEEEeecCCCceeee
Q 007229 23 LISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG----SVRIWGTHNGFVLKN 96 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~----~i~iwd~~~~~~~~~ 96 (612)
.+-++|||+.+...+ .+.+.+.|.++.+....+.- .+.-..++++|||+++.+.+.+. ++..-+..+...+ .
T Consensus 197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~-v 274 (635)
T PRK02888 197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV-V 274 (635)
T ss_pred ccccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE-E
Confidence 456788998876555 47888889998776555442 22446789999999998886422 2333322221100 0
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC----CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS----GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
.+. -..+ -++.++|++.... ++ .+.+.+-.+ +..+...-.-......++++|||+++++++..+.+|
T Consensus 275 vfn--i~~i--ea~vkdGK~~~V~--gn---~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 275 VFN--IARI--EEAVKAGKFKTIG--GS---KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred EEc--hHHH--HHhhhCCCEEEEC--CC---EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcE
Confidence 000 0000 1345578776653 22 234444444 223333333566778899999999999999999999
Q ss_pred EEEeCCCCee------------eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC----------CCeeeeeec
Q 007229 173 NFYEGPPFKF------------KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS----------GEKIGEFSS 230 (612)
Q Consensus 173 ~~wd~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~ 230 (612)
.+.|+.+.+. .....- .......+|.++|+...+..-|..|..||+.+ ...+..+..
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV 424 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDV 424 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccC
Confidence 9999987653 222221 22345678999998777778899999999876 223333311
Q ss_pred --cCCccccEEEEEEecCCCEEEEEeC
Q 007229 231 --EDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 231 --~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
..+|......=.-.|||++|++...
T Consensus 425 ~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 425 HYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CCccceeeecCCCcCCCCCCEEEEccc
Confidence 1122222222234678898888643
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.2e-06 Score=83.21 Aligned_cols=185 Identities=18% Similarity=0.164 Sum_probs=126.4
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccce
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEH 407 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 407 (612)
..+.+++++ +..++-|+.+|.+++.+.+... ..... |... ...|+++++++.||++.+-.+-+...
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~-~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~----- 105 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFD-HSSS----ILEGEYVASCSDDGKVVIGSLFTDDE----- 105 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccc-cccc----ccCCceEEEecCCCcEEEeeccCCcc-----
Confidence 345555555 6899999999999999887654 11111 2222 45789999999999998877655442
Q ss_pred eccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC-----CCeEEEEecCCeEEEEEccCc
Q 007229 408 IDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD-----GSEAIVGGQNGKLHIYSISGN 482 (612)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~dg~v~i~d~~~~ 482 (612)
........++.+++++|| .+.+++|+.-| +.++.-.=-
T Consensus 106 ------------------------------------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl 148 (846)
T KOG2066|consen 106 ------------------------------------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL 148 (846)
T ss_pred ------------------------------------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh
Confidence 233445567888999997 56789999988 777764311
Q ss_pred ccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccc-----eeEEEecCCCcEEEEeec
Q 007229 483 TLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR-----INCLAWSPSSTMVATGSI 557 (612)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~s~~~ 557 (612)
.......+..-.++|.++.| .|.++|-++.+| |++||+.+++.+......+..+ ...+.|.++. .|+.|-.
T Consensus 149 gnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~ 224 (846)
T KOG2066|consen 149 GNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG 224 (846)
T ss_pred cCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC
Confidence 11112345667789999999 567999998776 8999999988874443333211 2357787665 4555544
Q ss_pred CcEEEEEEccC
Q 007229 558 DTCVIIYEIGK 568 (612)
Q Consensus 558 d~~i~iwd~~~ 568 (612)
.+|+|..++.
T Consensus 225 -d~v~i~~I~~ 234 (846)
T KOG2066|consen 225 -DSVKICSIKK 234 (846)
T ss_pred -CeEEEEEEec
Confidence 4599999884
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=2.8e-06 Score=81.24 Aligned_cols=108 Identities=15% Similarity=0.219 Sum_probs=83.1
Q ss_pred EEEEEcCCCCEEEEEee----cCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 151 LSCEFKPTRPFRIATCG----EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
+-..|+|..+ +++.++ ..|+|.||- .+|++..... ..-.+.+++|+|..-.|+.|-.-|.+.+|...+.+...
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 3457888888 476664 357888883 4555443321 22236779999998888888889999999977665544
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.. ..|..+|..+.|+++|..++++..-|.+.+|..
T Consensus 96 v~---~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 96 VV---ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ec---cCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 44 489999999999999999999999999999998
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.4e-08 Score=96.79 Aligned_cols=204 Identities=16% Similarity=0.245 Sum_probs=148.7
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
..+.+..|+..-+|++||-+.+.|+.|+..|.|+++++.+|. .......|+..|+.+.=+.||..+++.+.-..- ...
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P-lsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP-LSA 1170 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCc-hHH
Confidence 345677899999999999999999999999999999999998 555788999999999999999988776654321 112
Q ss_pred EEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-cc---cccceEEEEECCCCCeE
Q 007229 131 AFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-RE---HSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 131 i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l 205 (612)
+|... ++.+.++|.+ -.++.|+....+ -+.|.......+||++++....++ .+ .+..=++..|+|+.+++
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 34333 4555555543 356788887664 444444456899999999887763 22 22233778899999876
Q ss_pred EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
+ .|| .+||.+..+.+..|.. .. --..-.|+|.|..++.-+ .+||+ .+.+.++....
T Consensus 1246 l---ndG--vLWDvR~~~aIh~FD~---ft-~~~~G~FHP~g~eVIINS-----EIwD~----RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHRFDQ---FT-DYGGGGFHPSGNEVIINS-----EIWDM----RTFKLLHSVPS 1301 (1516)
T ss_pred e---eCc--eeeeeccHHHHhhhhh---he-ecccccccCCCceEEeec-----hhhhh----HHHHHHhcCcc
Confidence 6 355 6899999888888732 22 222346999999888765 48999 77777766543
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.65 E-value=2.3e-05 Score=74.57 Aligned_cols=224 Identities=14% Similarity=0.040 Sum_probs=134.2
Q ss_pred ccCCCEEEEec--CCEEEEEeCCCCceeeEec---------------cCCCceEE-----EEECCCCCEEEE-eeCcCeE
Q 007229 27 NPKTDTILYCN--GRSVLIRYLDKPLHVEFYG---------------EHGYPVTV-----ARYSPNGEWIAS-ADVSGSV 83 (612)
Q Consensus 27 s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~---------------~h~~~v~~-----~~~s~d~~~las-~~~d~~i 83 (612)
..||+||..-. ...|-..+++.-++-+.++ .+++-|.| +=++|||+.+.. .-..+.+
T Consensus 138 ~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 138 TYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 34899998887 4555555555433322211 12222322 235567766543 3345678
Q ss_pred EEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCCCCE
Q 007229 84 RIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPTRPF 161 (612)
Q Consensus 84 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 161 (612)
.+.|.++.+... ++.. .+....++++|||+++.+.+.+... -..+...+.+. .+..+.- .. .-++.++|++
T Consensus 218 SvID~etmeV~~-qV~V-dgnpd~v~~spdGk~afvTsyNsE~-G~tl~em~a~e~d~~vvfni--~~--iea~vkdGK~ 290 (635)
T PRK02888 218 TAVDAETMEVAW-QVMV-DGNLDNVDTDYDGKYAFSTCYNSEE-GVTLAEMMAAERDWVVVFNI--AR--IEEAVKAGKF 290 (635)
T ss_pred EEEECccceEEE-EEEe-CCCcccceECCCCCEEEEeccCccc-CcceeeeccccCceEEEEch--HH--HHHhhhCCCE
Confidence 888888766333 3322 2355778999999999887632210 01122222111 1111100 00 0134557776
Q ss_pred EEEEeecCCeEEEEeCCC-----CeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCe-----------
Q 007229 162 RIATCGEDFLVNFYEGPP-----FKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEK----------- 224 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~----------- 224 (612)
..+ .++.|.+.|..+ .+.+..+. -......++++|||+++++++. +.++.|.|+++.+.
T Consensus 291 ~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 291 KTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred EEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 444 367899999988 34444333 4456788999999999887665 89999999988653
Q ss_pred -eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 225 -IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 225 -~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..+. .-.......+|.++|+...+..-|..|..|++.
T Consensus 367 vvaev----evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 367 VVAEP----ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred EEEee----ccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 3333 223445577899999888888889999999983
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.2e-05 Score=75.57 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=98.7
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeE-eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
+...+.--+++..+++|+.|+ .|.+++|+-..++.+.. ..+-.+.+..+.+|++..++|.|+..|.|.++.+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344666677788899999998 59999999887766543 2335566777889999999999999999999998875431
Q ss_pred ee-----eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC----ceeeeeccCCceEEEEEEcCC
Q 007229 95 KN-----EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG----TTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 95 ~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~ 158 (612)
.. .-..|+..|++++|++|++.+.+|...+ .+.....++. ...+.+......|..+.....
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~G---kv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~ 181 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQG---KVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS 181 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCc---eEEEEEechhhhhccccceeeccCcceEEeecccc
Confidence 11 1123678999999999999999988877 3455555541 122333344566666665543
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=9.4e-06 Score=77.45 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=125.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 182 (612)
.+++++++ ++.++.+..++ .++..+ .+.+ .+...|... .-+|.| +++|+.||+|.+-.+-+.+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g-----~v~~~~~~~~~-~~~~~~s~~------~~~Gey-~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRG-----AVYLTTCQGNP-KTNFDHSSS------ILEGEY-VASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred HHHHHHhh--cceeeeccccc-----eEEEEecCCcc-ccccccccc------ccCCce-EEEecCCCcEEEeeccCCcc
Confidence 34455543 45677777665 344444 2332 333334433 557886 99999999999999888877
Q ss_pred eecccccccceEEEEECCC-----CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 183 KLSHREHSNFVNCIRFSPD-----GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
..++. ...++.+++++|+ .+++++|+..| +.++.-.--...... ......++|.++.|. |+++|-++.+|
T Consensus 106 ~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 106 ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC
Confidence 66553 4567999999998 46789999888 777653211111111 112567899999996 88888887665
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccc-cceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNA-VEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
+++||. ..++.+..++.+.... .......+.|.++..++.+...+|.+..++
T Consensus 181 -v~vyd~----~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 -VKVYDT----PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred -cEEEec----cccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 899999 7888777776655322 233445567777777777778888888877
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.57 E-value=2.7e-05 Score=73.09 Aligned_cols=216 Identities=15% Similarity=0.122 Sum_probs=119.6
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEe-ecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIW-GTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iw-d~~~~~~~~~~~ 98 (612)
.+..++++|+|++++++++|...|+.....+... .+.-...+|++.++ .|+-...++|.|+ +++... .. .+
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~-~k-~i 105 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEV-VK-SI 105 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-T-T----
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCcccc-ce-EE
Confidence 3568999999999999999999999844333322 23445788999666 5555558889996 443322 11 11
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
.. ...+..+-. |..|...+.+ .+.+++|++++.++.+... +|..+.|++++.+ ++..+.+ .+.+++..
T Consensus 106 ~~-~~~~~~If~---G~LL~~~~~~----~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~-val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 106 KL-PFSVEKIFG---GNLLGVKSSD----FICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL-VALVTKD-SIYILKYN 173 (443)
T ss_dssp ---SS-EEEEE----SSSEEEEETT----EEEEE-TTT--EEEEESS---E-EEEEE-TTSSE-EEEE-S--SEEEEEE-
T ss_pred cC-CcccceEEc---CcEEEEECCC----CEEEEEhhHcceeeEEecC--CCcEEEEECCCCE-EEEEeCC-eEEEEEec
Confidence 11 112333333 8888887776 4889999999999999854 4899999999995 6666544 56666533
Q ss_pred CC---------e--eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 179 PF---------K--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 179 ~~---------~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
.. - ....+..-...|.+..|..| .++..+.. .++- +-.|+.-..- .-..++.-+.+.++.
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~----~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA----HLDKPLYLLGYLPKE 244 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE----E-SS--EEEEEETTT
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE----EcCCceEEEEEEccC
Confidence 22 0 11222222567888888865 44444444 5665 3334332222 224567777888877
Q ss_pred CEEEEEeCCCcEEEEEe
Q 007229 248 KKVLTVSADKSAKVWEI 264 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~ 264 (612)
+.+.....|+.+..+.+
T Consensus 245 ~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYEL 261 (443)
T ss_dssp TEEEEE-TT--EEEEE-
T ss_pred CEEEEEECCCCEEEEEE
Confidence 78888888988888877
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.57 E-value=0.00044 Score=64.51 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=72.9
Q ss_pred EEEEEccCccccccee-eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE
Q 007229 474 LHIYSISGNTLTEEMV-LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 474 v~i~d~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 552 (612)
-.+|++..+++..... --.....+.+.+++|+...|+.|+.||.|.+||...+..... ...-.++.++|+|+|.++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEE
Confidence 4567777665432221 124567899999999999999999999999999987755422 245668899999999999
Q ss_pred EEeecCcEEEEEEccC
Q 007229 553 ATGSIDTCVIIYEIGK 568 (612)
Q Consensus 553 ~s~~~d~~i~iwd~~~ 568 (612)
++|+..|.+.+||+.-
T Consensus 315 ~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 315 VVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCceEEEEEeec
Confidence 9999999999999864
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.55 E-value=0.00016 Score=61.82 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=116.8
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccC-CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEH-GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-- 93 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-- 93 (612)
..++.++|+||.+.|++.. .+.|+.++.+ |+.++.+.-. .+..-.|++..+++++++.-.++.+.+.++.....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 3599999999977776665 4788888875 6777765432 46788999999998888887899999999843221
Q ss_pred -ee--eeee-----ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC---Cceeee--------eccCCceEEEEE
Q 007229 94 -LK--NEFK-----VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS---GTTVGD--------FDGHSRRVLSCE 154 (612)
Q Consensus 94 -~~--~~~~-----~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~---~~~~~~--------~~~~~~~v~~~~ 154 (612)
.. ..+. .+...+..++|.|.++.|+++-+... ..++.++. ...+.. .......+.+++
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP---KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS---EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC---hhhEEEccccCccceeeccccccccccceeccccceE
Confidence 10 1111 24457999999999888887766653 35666653 221111 122445688999
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeecc--cc--c-----ccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--RE--H-----SNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~--~-----~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
++|....+++....+..+..+| .+|+.+..+ .. | -...-.|+|.++|+ |+..++-+..+++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 9999888888899999999999 556655442 21 1 13578899999996 4445666555444
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=4.3e-06 Score=80.80 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=131.5
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceE
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRV 150 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v 150 (612)
+..++.|+....+...|+.+.+ ..+......+++.-|+ .+++.|.+|...+ .+.+.+.++-+.++++..|++.|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G---~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASGVTIMR--YNNRNLFCGDTRG---TVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred Ccceeecchhhheeeeecccce-eeeeeeccCCceEEEE--ecCcEEEeecccc---eEEeecCCcCceeeeeeccccce
Confidence 4567777777788888988876 3333333333455554 3566777666666 46777888999999999999999
Q ss_pred EEEEEcCCCCEEEEEeec---------CCeEEEEeCCCCeeeecccccccceEEEEECCC-CCeEEEEEcCCcEEEEecC
Q 007229 151 LSCEFKPTRPFRIATCGE---------DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGK 220 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~ 220 (612)
.++... |+ +|++|+. |.-|+|||++..+.+..+.-+-++ .-+.|.|. ...+++++..|...+-|..
T Consensus 221 SDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 221 SDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 876654 55 6888875 557899999998887776655554 56678884 3467888889999998832
Q ss_pred C-CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 221 S-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+ +.+.............+..+.++++++.++.+..+|.|.+|.-
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 1111111111245566999999999999999999999999984
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.51 E-value=0.00023 Score=69.32 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=69.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeeccccccc------ceE--EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCC
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSN------FVN--CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG 233 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 233 (612)
.++.++.++.+.-.|..+++.+........ .+. .++.. ++..++.++.++.|.-+|.++|+.+-.+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 477777889999999999988876543222 010 11111 225788888999999999999999888742211
Q ss_pred --ccccEE-EEEEecCCCEEEEEe---------CCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 234 --HHGSIY-AVSWSPDGKKVLTVS---------ADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 234 --~~~~v~-~i~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
....+. +..+. + ..++.++ .+|.+..+|. .+++.+-.+...
T Consensus 142 ~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~----~TG~~~W~~~~~ 194 (488)
T cd00216 142 VPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDV----ETGKLLWRFYTT 194 (488)
T ss_pred cCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEEC----CCCceeeEeecc
Confidence 000011 11222 2 3444443 3577888888 888887776653
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.51 E-value=0.00051 Score=66.94 Aligned_cols=274 Identities=10% Similarity=0.018 Sum_probs=152.2
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecC-----CCeE--EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-----GRID--DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF 143 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~i~--~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~ 143 (612)
+..+..++.++.|.-.|..+++.+.+.-.... ..+. .++.. ++..++.++.++ .+...+.++|+.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g---~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDG---RLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCC---eEEEEECCCCCEeeee
Confidence 33566666788999999998875432211111 0000 01111 224565555555 4566667789988887
Q ss_pred ccCCce-----E-EEEEEcCCCCEEEEEee---------cCCeEEEEeCCCCeeeeccccccc-----------------
Q 007229 144 DGHSRR-----V-LSCEFKPTRPFRIATCG---------EDFLVNFYEGPPFKFKLSHREHSN----------------- 191 (612)
Q Consensus 144 ~~~~~~-----v-~~~~~~~~~~~~l~~~~---------~d~~i~~wd~~~~~~~~~~~~~~~----------------- 191 (612)
...... + ....+.. . +++.++ .++.+..+|..+++.+........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred cCCCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 654321 1 1122222 2 344443 367899999999998877543211
Q ss_pred ---ce-EEEEECCCCCeEEEEEcCC------------------cEEEEecCCCCeeeeeeccCCccc----cEEEEEEe-
Q 007229 192 ---FV-NCIRFSPDGSKLISVSSDR------------------KGLIYDGKSGEKIGEFSSEDGHHG----SIYAVSWS- 244 (612)
Q Consensus 192 ---~v-~~~~~s~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~----~v~~i~~~- 244 (612)
.+ ...++.+.+..++.++.++ .+.-+|.++|+..-.+... .+.. ......+.
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEe
Confidence 01 1234455566788887665 6999999999998877421 1110 00001111
Q ss_pred ---cCCC---EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE----------------
Q 007229 245 ---PDGK---KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV---------------- 302 (612)
Q Consensus 245 ---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 302 (612)
-++. .++.++.+|.+...|. .+++.+-....... ......+.++++
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~----~tG~~~W~~~~~~~--------~~~~~~~~vyv~~~~~~~~~~~~~~~~~ 360 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDR----TTGKLISARPEVEQ--------PMAYDPGLVYLGAFHIPLGLPPQKKKRC 360 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEEC----CCCcEeeEeEeecc--------ccccCCceEEEccccccccCcccccCCC
Confidence 1333 5777888999999999 88888776553210 011111222222
Q ss_pred --EcCCEEEEEEcCCCCCCceeecC-cc------cce--eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 303 --SLGGIISIFSASNLDKAPLSFSG-HV------KNV--STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 303 --~~~~~i~~~~~~~~~~~~~~~~~-~~------~~v--~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
..+|.+.-+|..+.+.....-.+ +. .+. ..+.. . +..++.++.||.++.+|..+++..-...
T Consensus 361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~--g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-A--GNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-c--CCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 23456666665554433322211 00 011 11112 2 6788899999999999999998876654
No 343
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.50 E-value=4.9e-06 Score=80.41 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=136.8
Q ss_pred CCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEE
Q 007229 29 KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDD 107 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 107 (612)
++..++.|+ ...+..+|+.+.+..+...-....|+-++ .+++++.+|...|+|.+-|..+.+ ..+.+..|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 344555555 67788889998887776554444555554 468899999999999999999998 66799999999986
Q ss_pred EEECCCCCEEEEEeCCCCe------eeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe---CC
Q 007229 108 LQWSPDGLRIVACGDGKGK------SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE---GP 178 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd---~~ 178 (612)
+ .-.|..|++||-.... .++.||+...-+.+.-+.-+-++ .-+.|+|.-...++.++..|...+-| +.
T Consensus 223 f--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 F--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred e--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 5 4578899999865422 25677777766666555544444 55788888777899999999999988 33
Q ss_pred CCe-eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 179 PFK-FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 179 ~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
+.. .+..+......+..+++|++++.++.|..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 321 1222223345599999999999999999999999997
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.50 E-value=0.00035 Score=67.10 Aligned_cols=242 Identities=14% Similarity=-0.002 Sum_probs=128.8
Q ss_pred ceeEEEEccCCCEEEEec--CC----EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-----------cCe
Q 007229 20 RGILISGNPKTDTILYCN--GR----SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-----------SGS 82 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-----------d~~ 82 (612)
.+...++||||+++|++- +| .++++|+++++.+...... ..-..+.|.+|++.++.... ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 344689999999999984 33 7999999999776532111 12234999999988766542 334
Q ss_pred EEEeecCCCcee-eeeeeecCCC--eEEEEECCCCCEEEEEeCCCCe-eeEEEEEecCC----ceeeeeccCCceEEEEE
Q 007229 83 VRIWGTHNGFVL-KNEFKVLSGR--IDDLQWSPDGLRIVACGDGKGK-SFVRAFMWDSG----TTVGDFDGHSRRVLSCE 154 (612)
Q Consensus 83 i~iwd~~~~~~~-~~~~~~~~~~--i~~~~~s~~~~~l~~~~~~~~~-~~i~i~~~~~~----~~~~~~~~~~~~v~~~~ 154 (612)
|..|++.+...- ...+...... ...+..++|+++|+.....+.. ..+.+...+.+ .....+......+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 888888876532 2233333332 6788999999998876555543 33444444443 23444443443343333
Q ss_pred EcCCCCEEEEEe--ecCCeEEEEeCCCCee---eecccccccceEEEEECCCCCeEEEE-EcCC--cEEEEecCCCCeee
Q 007229 155 FKPTRPFRIATC--GEDFLVNFYEGPPFKF---KLSHREHSNFVNCIRFSPDGSKLISV-SSDR--KGLIYDGKSGEKIG 226 (612)
Q Consensus 155 ~~~~~~~~l~~~--~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~ 226 (612)
-+..+.+.+.|- ...+.|.-.++..... ...+..+...+.--.+...+++|+.. ..++ .|+++++..+....
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 233444333342 2235666667766552 22444455533333333345555544 3343 47889987444444
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEE--eC--CCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTV--SA--DKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~--~~--dg~i~iw~~ 264 (612)
.+.. ...+.|..+...++++.+... +. -+++..||+
T Consensus 364 ~~~~--p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 364 EIPL--PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp EEES--SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred eecC--CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 4432 233445666655655544332 22 245666666
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00092 Score=62.70 Aligned_cols=252 Identities=17% Similarity=0.122 Sum_probs=166.2
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCE-EEEeeCcCeEEEeecCCCceeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEW-IASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-las~~~d~~i~iwd~~~~~~~~~ 96 (612)
....+++.|++..+.+.. .+.+...+............-...-..+++++++.. .++...+..|.+.|..+.+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455788899997776665 334444444422222211111134457889998874 44555568999999877764433
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 176 (612)
...+. ....++++|+++.+.++........+.+.+-.+++.+.....-..+ ..+++.|++..+.++-..++.|.+.|
T Consensus 112 ~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 112 IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 33333 7788999999998888776421114555555577777775443344 89999999997677777899999999
Q ss_pred CCCCeeee-c---ccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 177 GPPFKFKL-S---HREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 177 ~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
........ . ...-......+.++|+|+++.+.... +.+...|..++......... +.. ....+.+.|+|+.
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKA 266 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCE
Confidence 77765553 1 11222345678899999977766554 48999998888777652111 222 5667899999998
Q ss_pred EEEEeC-CCcEEEEEeecCCCCCeeEeeeecc
Q 007229 250 VLTVSA-DKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 250 l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
+.+... .+.+.+-|. .+......+...
T Consensus 267 ~yv~~~~~~~V~vid~----~~~~v~~~~~~~ 294 (381)
T COG3391 267 AYVANSQGGTVSVIDG----ATDRVVKTGPTG 294 (381)
T ss_pred EEEEecCCCeEEEEeC----CCCceeeeeccc
Confidence 888744 478888887 666666555443
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=0.00028 Score=62.78 Aligned_cols=223 Identities=13% Similarity=0.120 Sum_probs=145.0
Q ss_pred EEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee-
Q 007229 24 ISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV- 100 (612)
Q Consensus 24 ~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~- 100 (612)
..|.|+...|+.+. ++.|.-|+.++++... +. +...+.++..-.++..|+++.. -+.+++.+++... ..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-TLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-EEeccc
Confidence 45788888787776 7899999998776543 33 3444556555555556666633 4667777655421 11111
Q ss_pred ---c-CCCeEEEEECCCCCEEEEEeC------CCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 101 ---L-SGRIDDLQWSPDGLRIVACGD------GKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 101 ---~-~~~i~~~~~s~~~~~l~~~~~------~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. ....+.....|+|.+.+.... ........+|.++ .+..++.+..+-..-+.++||||++.+.++=+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1 135678889999988776655 1112234688888 6777777787778888999999999666666667
Q ss_pred CeEEEEeCCC--Cee-----eecccccccceEEEEECCCCCeEEEEEcCC-cEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 170 FLVNFYEGPP--FKF-----KLSHREHSNFVNCIRFSPDGSKLISVSSDR-KGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 170 ~~i~~wd~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
+.|.-|++.. +.. ...+....+..-.++...+|++-+++..+| .|.+|+.+ |+.+..+. -....++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---lP~~~~t~~ 260 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---LPVKRPTNP 260 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE---CCCCCCccc
Confidence 8888887652 111 111223445666777888887665444444 89999987 99988884 233667788
Q ss_pred EEec-CCCEEEEEeC
Q 007229 242 SWSP-DGKKVLTVSA 255 (612)
Q Consensus 242 ~~~~-~~~~l~~~~~ 255 (612)
+|-- +.+.|++.+.
T Consensus 261 ~FgG~~~~~L~iTs~ 275 (307)
T COG3386 261 AFGGPDLNTLYITSA 275 (307)
T ss_pred eEeCCCcCEEEEEec
Confidence 8853 4455555443
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.40 E-value=0.00047 Score=63.99 Aligned_cols=276 Identities=11% Similarity=0.015 Sum_probs=129.1
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC-ee-EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG-RV-IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
.|+.+.|.++...|+++...|.|.+|....+...+ +. -...... .........+..+.-.+..-. =++.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~di~~r~~---~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYN------FRRFSLNNSPGKLTDISDRAP---PSLK 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------------S--GGGSS-SEEE-GGG-----TT-S
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcc------cccccccCCCcceEEehhhCC---cccc
Confidence 47899999998899999999999999984322211 00 0000000 000000000111110000000 0000
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEE
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWR 394 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~ 394 (612)
.+-.+...+....++|++++.++ -.+++.|..+|.+.+.|++....+....-.+.
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~----------------------- 128 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRES----------------------- 128 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG------------------------
T ss_pred cccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeecccccc-----------------------
Confidence 11122334455678999999887 78999999999999999987765543220000
Q ss_pred EecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc-----cCC---CeEE
Q 007229 395 VPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA-----PDG---SEAI 466 (612)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~---~~l~ 466 (612)
.........++++.|+ .|+ -.++
T Consensus 129 -------------------------------------------------~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 129 -------------------------------------------------FLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp --------------------------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred -------------------------------------------------ccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 0000011123334333 232 3577
Q ss_pred EEecCCeEEEEEccC---cccc--cceeeccccCceEEEE-EcCC---------------------CcEEEEEcCCCeEE
Q 007229 467 VGGQNGKLHIYSISG---NTLT--EEMVLEKHRGAITVIQ-YSPD---------------------VSMFASADGNREAI 519 (612)
Q Consensus 467 ~~~~dg~v~i~d~~~---~~~~--~~~~~~~~~~~i~~~~-~s~~---------------------~~~l~~~~~d~~i~ 519 (612)
+|+..|.+.+|.+.- +... .......+.++|..+. |+.+ ..+++.+ .+..+|
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceE
Confidence 888888888887641 2111 0111123445555544 3211 1144444 457899
Q ss_pred EEecCCcceeeecccccccceeEEEec-----CCCcEEEEeecCcEEEEEEccCCCcceeeeeccc----ccCeeeEEEe
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWS-----PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH----LGGVYGVAFM 590 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h----~~~v~~~~~~ 590 (612)
++...+.+...+.+. .......+.+- ..+..|++-..+|.++++.+.. - +.+.....+ ...+....++
T Consensus 239 v~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-L-kei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-L-KEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp EE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----EEEEEE-SS---HHHHTT-EE-
T ss_pred EEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-c-hHhhcccCCCccccccccccEEC
Confidence 999998887766553 32334444552 3566788889999999999997 4 455444432 2345566777
Q ss_pred -cCceEEEcc
Q 007229 591 -DDFNVVSSG 599 (612)
Q Consensus 591 -~~~~l~s~~ 599 (612)
+|+.++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 666655544
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.39 E-value=0.00021 Score=67.37 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=124.4
Q ss_pred EEEEccCCCEEEEecCC------------EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC
Q 007229 23 LISGNPKTDTILYCNGR------------SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~------------~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~ 90 (612)
.++.+|.|.-||...+. .|.||+... +.+..+.-..+.|.++.|+.+.++++ ...||.++++|+..
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~e~Lvv-V~~dG~v~vy~~~G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTDDEELVV-VQSDGTVRVYDLFG 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECCCCeEEE-EEcCCEEEEEeCCC
Confidence 46778888888887654 588998775 44554443348999999999766554 45899999999874
Q ss_pred Cce--e---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee---ccCCc------eEEE-EEE
Q 007229 91 GFV--L---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF---DGHSR------RVLS-CEF 155 (612)
Q Consensus 91 ~~~--~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~------~v~~-~~~ 155 (612)
... + ..........+....+..+|-.++ ..+.. ++.+..++.....+.+ ..... .... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~--~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNR--FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCe--EEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 330 0 001111112233334444552222 22221 2222222221111111 11110 1111 234
Q ss_pred cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 156 KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 156 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
+.+.. ..+....++.+.+-+-...+. + ...+++..|+.||+++++|.-..+|.+.+.+..-.+...++.. ...
T Consensus 187 ~~~~~-~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--~~~ 259 (410)
T PF04841_consen 187 SSDRV-VEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--DSK 259 (410)
T ss_pred ecCcc-eEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--CcC
Confidence 44444 244444455555443322211 2 1246799999999999999999999999998766666666632 234
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
.....+.|.-+...++.- ...+.+..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 566788887654333322 33455554
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.36 E-value=0.0018 Score=58.30 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=77.8
Q ss_pred EEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec
Q 007229 106 DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 185 (612)
+.=+|.+||++|+.+++..+...+.+.++++++..+--.+..........+|+++. ++-......++--|+.+++....
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~-~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA-LYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE-EEEEETTTEEEEEETTT--EEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe-EEEEECCCeEEEEECCcCcEEEE
Confidence 34478999999988887554434444455565544433332233335667788885 54444556888899999887666
Q ss_pred ccccccceEEEEEC--CCCCeEEEEEc----------------------CCcEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 186 HREHSNFVNCIRFS--PDGSKLISVSS----------------------DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 186 ~~~~~~~v~~~~~s--~~~~~l~~~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
+......+-...|. .|+..++-.-. ...|.-.|+.+|+....+ .....+..+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~----~~~~wlgH~ 193 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF----EDTDWLGHV 193 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE----EESS-EEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE----ecCccccCc
Confidence 66566655545553 45555443211 123555677777765555 455667778
Q ss_pred EEecCCCEEEEEeCCC-----cEEEEEee
Q 007229 242 SWSPDGKKVLTVSADK-----SAKVWEIL 265 (612)
Q Consensus 242 ~~~~~~~~l~~~~~dg-----~i~iw~~~ 265 (612)
.|+|....+++-+..| .-++|-++
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 8888544444443333 13566664
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.35 E-value=0.0029 Score=61.90 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc-ccE-------EEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH-GSI-------YAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v-------~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+..|+.++.++.|.-.|.++|+.+-++....... ... ..+++. +..++.++.|+.+.-.|. .+++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa----~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDA----KTGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEEC----CCCCE
Confidence 4567777888899999999999887763211100 000 012222 345777788999999998 88988
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCC
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKA 319 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 319 (612)
+-....................++.++++.. +|.|..+|..+.+..
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 8776543211111111112222566777653 578888887665543
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.31 E-value=0.00044 Score=65.11 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=108.7
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE-E
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF-M 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~-~ 133 (612)
+.........+.++|+|++++.+ .||.-.|+.....+. ...+.-...+|.+.++ +|+..... .+.|+ +
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~------k~~G~g~~~vw~~~n~-yAv~~~~~---~I~I~kn 96 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN------KAFGSGLSFVWSSRNR-YAVLESSS---TIKIYKN 96 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE------EEEEE-SEEEE-TSSE-EEEE-TTS----EEEEET
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc------cccCceeEEEEecCcc-EEEEECCC---eEEEEEc
Confidence 44455668899999999999995 577888887443321 1223455688999665 44444433 24553 2
Q ss_pred ecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCc
Q 007229 134 WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
.+ .+....++.. ..+..+-. |. +|...+. +.|.+||.++++.+..+... +|..+.|++++++++..+. ..
T Consensus 97 ~~-~~~~k~i~~~-~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~ 166 (443)
T PF04053_consen 97 FK-NEVVKSIKLP-FSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-DS 166 (443)
T ss_dssp TE-E-TT-----S-S-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--S
T ss_pred Cc-cccceEEcCC-cccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-Ce
Confidence 22 1111122211 12333322 66 3555444 48999999999999888643 4899999999999998875 46
Q ss_pred EEEEecCCC-----------CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 214 GLIYDGKSG-----------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 214 i~vwd~~~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
+.+++.... .....+ ..-...|.+.+|..+ .++..... .++.+-- .....+..+...
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~---~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~~----Ge~~~i~~ld~~-- 234 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELI---HEISERIKSGCWVED--CFIYTTSN-HLKYLVN----GETGIIAHLDKP-- 234 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEE---EEE-S--SEEEEETT--EEEEE-TT-EEEEEET----TEEEEEEE-SS---
T ss_pred EEEEEecchhcccccccCchhceEEE---EEecceeEEEEEEcC--EEEEEcCC-eEEEEEc----CCcceEEEcCCc--
Confidence 888764432 022222 122567888899865 44444444 6766321 122222222211
Q ss_pred cccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 283 NAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
..+.+.....+.++....++.+..+.+.
T Consensus 235 ----~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 235 ----LYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -----EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ----eEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 1223333334667777777666666543
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.0011 Score=62.29 Aligned_cols=221 Identities=12% Similarity=0.091 Sum_probs=151.5
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC---cCeEEEeecCCCcee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV---SGSVRIWGTHNGFVL 94 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~---d~~i~iwd~~~~~~~ 94 (612)
....+++++++..+.... .+.|.+.|.++.+......- ......++++|+++.+..+.. ++++.+.|..+.+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345789999999777666 68999999887777665432 226678999999987777654 688999999988854
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceee-e---eccCCceEEEEEEcCCCCEEEEEeecC-
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVG-D---FDGHSRRVLSCEFKPTRPFRIATCGED- 169 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~l~~~~~d- 169 (612)
.. ...-..+ ..++++|+|+.+..+....+ .+.+.+.+.....+ . ...-......+.++|++.+..+....+
T Consensus 154 ~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~--~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 154 AT-IPVGNTP-TGVAVDPDGNKVYVTNSDDN--TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EE-EecCCCc-ceEEECCCCCeEEEEecCCC--eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 44 3333334 89999999998887774443 34555544333332 1 112223446789999999655555544
Q ss_pred -CeEEEEeCCCCeeeec-cc-ccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 170 -FLVNFYEGPPFKFKLS-HR-EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 170 -~~i~~wd~~~~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
+.+...|..++..... .. +.. ....+..+|+|+.+.+... .+.+.+.|..+................+..+++.+
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 6999999998877665 22 222 5667899999999888744 48899999888887777643323334456666655
Q ss_pred C
Q 007229 246 D 246 (612)
Q Consensus 246 ~ 246 (612)
.
T Consensus 309 ~ 309 (381)
T COG3391 309 L 309 (381)
T ss_pred e
Confidence 3
No 353
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=0.0011 Score=55.81 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=153.0
Q ss_pred ceeEEEEccCCCE-EEEec--CCEEEEEeCCCCceeeEeccCCCc--eEEEEECCCCCEEEEeeC-----cCeEEEeecC
Q 007229 20 RGILISGNPKTDT-ILYCN--GRSVLIRYLDKPLHVEFYGEHGYP--VTVARYSPNGEWIASADV-----SGSVRIWGTH 89 (612)
Q Consensus 20 ~v~~~~~s~d~~~-l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~las~~~-----d~~i~iwd~~ 89 (612)
+...++|+|.-.. ++++- +..-.++|..+.+.+.++...++. --.=.|||||++|...-. -|.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3345778886554 34444 557778898887766654322111 112479999999987643 3779999999
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
.+-+...++..|.-....+.|.+||+.++.+...- +.. -+-++. -|-.-+..
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGI-----eth-pdfgR~----------------------~lNldsMe 200 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGI-----ETH-PDFGRT----------------------ELNLDSME 200 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCce-----ecc-cccCcc----------------------ccchhhcC
Confidence 77666678888998999999999999998875431 110 000110 01111222
Q ss_pred CeEEEEeCCCCeeeec--cc--ccccceEEEEECCCCCeEEEEEcCCc-----EEEEecCCCCeeeeeeccC----Cccc
Q 007229 170 FLVNFYEGPPFKFKLS--HR--EHSNFVNCIRFSPDGSKLISVSSDRK-----GLIYDGKSGEKIGEFSSED----GHHG 236 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~--~~--~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~----~~~~ 236 (612)
-++.+.|..+++++.. +. .+.-.|..++.-+||..++.+-..|. -.+=-...++.+..+..++ ....
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 2334444444444332 33 35567888999999876655433322 1122223344443332111 2234
Q ss_pred cEEEEEEecCCCEEEEEeCC-CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 237 SIYAVSWSPDGKKVLTVSAD-KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
.|-+++.+.+..+++..+-. +...+||. .++..+..-.... ..++....+-+++.+.+|.+.+++
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da----~tG~vv~~a~l~d-------aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDA----ATGAVVSEAALPD-------AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEc----CCCcEEecccccc-------cccceeccCceEEecCCceEEecc
Confidence 57788888766666655544 56779999 8998887655442 334445567778888888888775
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.23 E-value=0.0051 Score=58.18 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=108.4
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-------cccceEEEEee
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-------YDARIKCLAAV 379 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~~i~~~~~~ 379 (612)
.|.+|+.... .+..+.-..+.+..+.|.. ...|+.-..||.++++|+.... ...... ....+....+.
T Consensus 62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCC--EeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 3566653322 2233332337888999987 6778888899999999997555 111110 11222222332
Q ss_pred ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc
Q 007229 380 EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA 459 (612)
Q Consensus 380 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 459 (612)
+.-++.-..++.+...+-.............+.........+ ....+ ..++
T Consensus 137 ~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~---------------------------~~~~i--~~l~ 187 (410)
T PF04841_consen 137 KNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP---------------------------SWTVI--PLLS 187 (410)
T ss_pred CCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccc---------------------------ccccc--eEee
Confidence 222333344555544432221100000000000000000000 00001 2344
Q ss_pred cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccc
Q 007229 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR 539 (612)
Q Consensus 460 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 539 (612)
.+....+....++.+.+.+-...+. +. ..+++..|++||+++++|.-..+|.+.+....-.+...+.-..-...
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~-----i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ-----ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc-----cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 4555555555556666554332211 21 24589999999999999999889998888766555543333323456
Q ss_pred eeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 540 INCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 540 i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
...+.|.-+...++.- ...+.+..
T Consensus 262 p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 262 PKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CcEEEEECCCcEEEEe--CCEEEEEC
Confidence 6777777654333222 33455554
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.23 E-value=0.00077 Score=66.28 Aligned_cols=205 Identities=13% Similarity=0.123 Sum_probs=114.5
Q ss_pred cCCCceEEEEECCCCCEEEEee------CcC--eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 57 EHGYPVTVARYSPNGEWIASAD------VSG--SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
+....+...++||||+.+|... .|. .|.+++... . ...... ......-.|+|||+.|++..+....
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~-~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~-- 420 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-V-AVQVLE--GHSLTRPSWSLDADAVWVVVDGNTV-- 420 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-c-ceeeec--CCCCCCceECCCCCceEEEecCcce--
Confidence 3345788999999999888764 244 444445422 2 222222 2348889999999988877643210
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
. ++......+.+.+.++..++... .....|..+.|||||..++..
T Consensus 421 -------------------------~-------~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 421 -------------------------V-------RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred -------------------------E-------EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEE
Confidence 0 11111223455555666555433 334569999999999988876
Q ss_pred EcCCcEEE---EecCCCCeee-eee-ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcc
Q 007229 209 SSDRKGLI---YDGKSGEKIG-EFS-SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283 (612)
Q Consensus 209 ~~dg~i~v---wd~~~~~~~~-~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 283 (612)
. ++.|.+ -....|+... ... ........+.++.|.+++.+ +++..++.-.+|.+.-++..... +.. .
T Consensus 466 ~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~---~~~---~ 537 (591)
T PRK13616 466 I-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDA---LPS---R 537 (591)
T ss_pred E-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEecCCccccc---cCC---C
Confidence 6 577776 5545554111 100 01123344688999999885 45566666667776444333222 111 1
Q ss_pred ccceeeeeeeccCCEEEEEEcCCEEEE
Q 007229 284 AVEDMLVGCLWQNDHLITVSLGGIISI 310 (612)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ 310 (612)
.......++.-....+++...++.+.+
T Consensus 538 n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 538 NLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred CccCceEEEecCCceEEEEcCCceEEe
Confidence 112233334444455666666664444
No 356
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=98.23 E-value=0.0032 Score=55.75 Aligned_cols=270 Identities=12% Similarity=0.116 Sum_probs=122.0
Q ss_pred cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-----cccceEEEEeeccEEEEecCCCeEEEEecCCC
Q 007229 326 HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-----YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~ 400 (612)
-...+..+.|.+. ..-+++| ..+.|. -..+.++.-..... .......+.+.++..+.++..+.+..-. ..+
T Consensus 15 t~~~l~dV~F~d~-~~G~~VG-~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~-DgG 90 (302)
T PF14870_consen 15 TDKPLLDVAFVDP-NHGWAVG-AYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTT-DGG 90 (302)
T ss_dssp -SS-EEEEEESSS-S-EEEEE-TTTEEE-EESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEES-STT
T ss_pred CCCceEEEEEecC-CEEEEEe-cCCEEE-EECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEec-CCC
Confidence 3457788888842 3344444 445442 22233322221111 1234567777555555556555433222 122
Q ss_pred CCCcccee--ccCCCcceeeecCCCCcEEEEEeeccEEEee-cccceeee--cccceEEEEEEccCCCeEEEEecCCeEE
Q 007229 401 ECGDAEHI--DVGSQPLDLSLALSSPELALVSTESGVILLD-SLKVMSKI--DLGFTVTACAIAPDGSEAIVGGQNGKLH 475 (612)
Q Consensus 401 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 475 (612)
..-..... ..+..+..+....++ ...+++....+..-. .++.-+.+ .....+..+..++||++++++.......
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~ 169 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYS 169 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEE
Confidence 11101111 122223333322222 333344444444333 33322222 2456788888999999999987766666
Q ss_pred EEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec-CCcceeee---cccccccceeEEEecCCCcE
Q 007229 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR-VSKEVKLN---NMLFHTARINCLAWSPSSTM 551 (612)
Q Consensus 476 i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~-~~~~~~~~---~~~~~~~~i~~~~~s~~~~~ 551 (612)
-||....... ..-..-..+|.+|.|+|++.+.+.+ ..|.|+.=+. ...+.-.+ ....-.-.+..++|.+++..
T Consensus 170 s~~~G~~~w~--~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 170 SWDPGQTTWQ--PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp EE-TT-SS-E--EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred EecCCCccce--EEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 7776543331 2222345789999999998877655 7788888772 22222111 01112334789999999888
Q ss_pred EEEeecCcEEEEEEccCCCcceeeee---cccccCeeeEEEecCceEEEccCCCeEEEE
Q 007229 552 VATGSIDTCVIIYEIGKPASSRITIK---NAHLGGVYGVAFMDDFNVVSSGEDACIRVW 607 (612)
Q Consensus 552 l~s~~~d~~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 607 (612)
.|+|+... + +...+. + +..+.. ..-......+.|.+.+.-+..+.+|.|.-|
T Consensus 247 wa~gg~G~-l-~~S~Dg-G-ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 247 WAVGGSGT-L-LVSTDG-G-KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEESTT--E-EEESST-T-SS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred EEEeCCcc-E-EEeCCC-C-ccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 88776542 2 233333 4 333332 233456889999955565666778888766
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=0.0026 Score=54.58 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=103.0
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEEEEEcCCcEEEEecC
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGK 220 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 220 (612)
.+.+-...+..++|.|+.+.++++....+.|...+.. |+.+..+.-. .+..-.+++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4566667799999999988788888889999988974 6776664322 3568889999888777765568999999884
Q ss_pred CCCe------eeeee--ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 221 SGEK------IGEFS--SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 221 ~~~~------~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
.... ...+. ....++..+..++|+|.++.|+.+-+..-..+|.+.... ....+.......
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-~~~~~~~~~~~~----------- 162 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-GGFDLFVSDDQD----------- 162 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE-HH-----------
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-Cccceeeccccc-----------
Confidence 3221 11221 122355679999999988888888777777788773211 011111000000
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
..........+.++.+.+..+.+++....+..|..+|....
T Consensus 163 ---------------------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 163 ---------------------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR 203 (248)
T ss_dssp ---------------------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred ---------------------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence 00011233456778888666788888888888988885443
No 358
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.19 E-value=0.0092 Score=59.56 Aligned_cols=539 Identities=12% Similarity=0.055 Sum_probs=281.4
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEE-ECC---CCCEEEEeeCcCeE--
Q 007229 12 CAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVAR-YSP---NGEWIASADVSGSV-- 83 (612)
Q Consensus 12 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~-~s~---d~~~las~~~d~~i-- 83 (612)
..|......+.+==-+|..-.++.+.++.+.++-++... ++.+. +--+.|..++ |-| +..+|+.+..+.++
T Consensus 9 qkpT~V~~av~gnFts~e~~nlivAk~~~lei~~~~~~G-Lq~i~sv~ifg~I~~i~~fRp~g~~kD~LfV~t~~~~~~i 87 (1096)
T KOG1897|consen 9 QKPTAVVTAVVGNFTSPENLNLIVAKGNRLEILLVEPNG-LQPITSVPIFGTIATIALFRPPGSDKDYLFVATDSYRYFI 87 (1096)
T ss_pred cCCceEeEEEeecccCccceeeeeeccceEEEEeecccc-ceeeEeeccceeEEEEEeecCCCCCcceEEEEECcceEEE
Confidence 334333434443334667777788888877777655332 22222 2334555554 555 34678888777664
Q ss_pred EEeecCCCceeeeeeeecCC----------CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC------ceeeee--cc
Q 007229 84 RIWGTHNGFVLKNEFKVLSG----------RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG------TTVGDF--DG 145 (612)
Q Consensus 84 ~iwd~~~~~~~~~~~~~~~~----------~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~------~~~~~~--~~ 145 (612)
.-||....+. ....|+. .=..+...|+++.+...-.++ .+.+..|++. .....+ .-
T Consensus 88 L~~d~~~~~v---v~~a~~~v~dr~gr~s~~g~~~~VDp~~R~Igl~~yqg---l~~vIp~d~~~sht~~s~l~~fn~rf 161 (1096)
T KOG1897|consen 88 LEWDEESIQV---VTRAHGDVSDRSGRPSDNGQILLVDPKGRVIGLHLYQG---LFKVIPIDSDESHTGGSLLKAFNVRF 161 (1096)
T ss_pred EEEccccceE---EEEecccccccccccCCCceEEEECCCCcEEEEEeecC---eEEEEEecccccccCccccccccccc
Confidence 4577653331 1222221 223456788888666666665 5677777753 222222 11
Q ss_pred CCceEEEEEEcCC--CCEEEEEe---ecCCeEEEEeCCCC--eeeecc----cccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 146 HSRRVLSCEFKPT--RPFRIATC---GEDFLVNFYEGPPF--KFKLSH----REHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 146 ~~~~v~~~~~~~~--~~~~l~~~---~~d~~i~~wd~~~~--~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
..-.|.+++|-.+ .+ .+++. +.+..++.|++.-+ +..... -.+.....-..=+|.|..|+.|.. - |
T Consensus 162 del~v~Di~fly~~s~p-t~~vly~Ds~~~Hv~~yelnl~~ke~~~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~-~-I 238 (1096)
T KOG1897|consen 162 DELNVYDIKFLYGCSDP-TLAVLYKDSDGRHVKTYELNLRDKEFVKGPWSNNVDNGASMLIPVPSPIGGVLVIGEE-F-I 238 (1096)
T ss_pred CcceEEEEEEEcCCCCC-ceEEEEEcCCCcEEEEEEeccchhhccccccccccccCCceeeecCCCCceEEEEeee-E-E
Confidence 2234666766432 22 24443 33456666654433 111111 011111222222344445554432 1 2
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEee--eeccCccccceeeeee
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKT--FASSTSNAVEDMLVGC 292 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 292 (612)
.-- ..+..............-+..-...+++...+.+..+|.+...-+.. .++.... ++...-....-...-+
T Consensus 239 ~Y~--~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~---~~e~~s~~~lkve~lge~siassi~ 313 (1096)
T KOG1897|consen 239 VYM--SGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSH---TGETVSGLDLKVEYLGETSIASSIN 313 (1096)
T ss_pred EEe--eCCceeEecccccCCceEEEcccccCCccEEEEecCCCcEEEEEeec---ccccccceEEEEEecCCcchhhhhh
Confidence 111 11222222211101111122233456888888999999988777631 2222222 1111101111111122
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCC---c--eeecCcccceeEEEEEec---CCcEEEEEe---cCCcEEEEEcCCce
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKA---P--LSFSGHVKNVSTLTALKI---SQQTILSSS---YDGAIIKWIRGVGY 361 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~---~--~~~~~~~~~v~~~~~~~~---~~~~l~~~~---~dg~i~~wd~~~~~ 361 (612)
..+++.+++|+.-|.-.+..+...... . ..--..-+++..+...+. .+..+++++ .||++++....-+-
T Consensus 314 ~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I 393 (1096)
T KOG1897|consen 314 YLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGI 393 (1096)
T ss_pred cccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccccc
Confidence 334889999999887777766543322 1 111224458888888732 345566544 47899988644332
Q ss_pred eeeecee--cccceEEEE--e---eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeecc
Q 007229 362 SSKLEKK--YDARIKCLA--A---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESG 434 (612)
Q Consensus 362 ~~~~~~~--~~~~i~~~~--~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (612)
....... .-..++.+. + .+++++.+-.+. -++..+... ........+......+..+.-....++--..+.
T Consensus 394 ~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~e-Trvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~ 471 (1096)
T KOG1897|consen 394 DELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISE-TRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTSNS 471 (1096)
T ss_pred ceeeEeecCCccceeEeeccccccCCcEEEEEeccc-eEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEeccc
Confidence 2211111 223344444 2 223444443333 334444333 222333444445555666655555577777788
Q ss_pred EEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC--C----cE
Q 007229 435 VILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--V----SM 508 (612)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--~----~~ 508 (612)
+++++......+...+..++..+.+.+...+++++.++.+...++..+.+. ...-..-...|.|+.++|- + ++
T Consensus 472 iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~-e~~~~~~e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 472 IRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR-EVSHKEFEYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred EEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeecccee-eeeeheecceeEEEecccCCCCCCcceE
Confidence 888886666666667777888888888888888888888887787766531 2222334568999999983 2 37
Q ss_pred EEEEcCCCeEEEEe-cCCcceeeec-ccc--cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 509 FASADGNREAIVWD-RVSKEVKLNN-MLF--HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 509 l~~~~~d~~i~iwd-~~~~~~~~~~-~~~--~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++.|..+..+.+-- ......+... +.+ -...|.-.+|--|..+|.++..||.+.-|-+..
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 88887776655442 2333322221 111 123455566666788999999999988877665
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.18 E-value=0.0064 Score=58.51 Aligned_cols=208 Identities=12% Similarity=0.102 Sum_probs=114.9
Q ss_pred ceEEEEECCCCCEEEEe-eCc----CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee------eE
Q 007229 61 PVTVARYSPNGEWIASA-DVS----GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS------FV 129 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~------~i 129 (612)
.+....+||||++||.+ +.. ..+++.|+.+++.+...+.... ...+.|.+|++.|+....+.... .-
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44478999999999865 333 4599999999975544433322 22399999999988877555322 34
Q ss_pred EEEEecCCcee----eeeccCC--ceEEEEEEcCCCCEEEEEeecCC---eEEEEeCCCC----eeeecccccccceE-E
Q 007229 130 RAFMWDSGTTV----GDFDGHS--RRVLSCEFKPTRPFRIATCGEDF---LVNFYEGPPF----KFKLSHREHSNFVN-C 195 (612)
Q Consensus 130 ~i~~~~~~~~~----~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~----~~~~~~~~~~~~v~-~ 195 (612)
.|+.+..|... ..+.... .....+..+++++++++...... .+.+.++..+ .....+......+. .
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 67777644332 2333333 22678899999998777665544 4777787764 22222333333333 3
Q ss_pred EEECCCCCeEEEEEc---CCcEEEEecCCCCe---eeeeeccCCccc--cEEEEEEecCCCEEEE-EeCCC--cEEEEEe
Q 007229 196 IRFSPDGSKLISVSS---DRKGLIYDGKSGEK---IGEFSSEDGHHG--SIYAVSWSPDGKKVLT-VSADK--SAKVWEI 264 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~---~~~~~~~~~~~~--~v~~i~~~~~~~~l~~-~~~dg--~i~iw~~ 264 (612)
+... .+.+++.... .+.|.-.++..... ...+. .+.. .+..+... +++|+. .-.++ .|+++++
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEEC
Confidence 3333 3434443322 35677777777653 21221 3333 45555543 444444 44443 5778887
Q ss_pred ecCCCCCeeEeeeecc
Q 007229 265 LEDGSGGRVIKTFASS 280 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~ 280 (612)
..+.........
T Consensus 357 ----~~~~~~~~~~~p 368 (414)
T PF02897_consen 357 ----DDGKESREIPLP 368 (414)
T ss_dssp ----T-TEEEEEEESS
T ss_pred ----CCCcEEeeecCC
Confidence 424444444443
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.16 E-value=0.00036 Score=68.53 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=105.9
Q ss_pred CceeEEEEccCCCEEEEec-------C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---------
Q 007229 19 GRGILISGNPKTDTILYCN-------G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--------- 80 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-------~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--------- 80 (612)
..+...++||||+.+|+.. + ..|.+++... .......+. ..+.-.|+|||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3678999999999999986 3 2666666533 333333433 38899999999988877532
Q ss_pred ---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE---EEecCCc-ee---eee-ccCCce
Q 007229 81 ---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA---FMWDSGT-TV---GDF-DGHSRR 149 (612)
Q Consensus 81 ---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i---~~~~~~~-~~---~~~-~~~~~~ 149 (612)
+.+.+.++..++ ... ...+.|..+.|||||++++...... +.+ ..-+.|. .+ ..+ .+-...
T Consensus 427 ~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~~g~----v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMIIGGK----VYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred CCCceEEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEECCE----EEEEEEEeCCCCceeecccEEeecccCCc
Confidence 223333444333 111 3356799999999999999887532 222 2222343 11 112 223344
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-cc--cccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-RE--HSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
+..+.|.+++. |+.+..++...+|.+.-....... .. ...++.+++=+++ .++....++.+.
T Consensus 499 ~~~l~W~~~~~--L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDS--LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCE--EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 68899999997 334444444455543322111111 22 3566777777753 455555566333
No 361
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.14 E-value=0.0014 Score=57.29 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=94.8
Q ss_pred ceeEEEEccCCCEEEEec--C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee-cCCCcee
Q 007229 20 RGILISGNPKTDTILYCN--G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG-THNGFVL 94 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd-~~~~~~~ 94 (612)
.+.+.++|+||+.+|+.. + ..++++....... ..+.+ ..++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999998876 4 4566655443222 22333 3888999999988887777666777774 3333322
Q ss_pred eeeeeec--CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CC------ceeeeeccCCceEEEEEEcCCCCEEE
Q 007229 95 KNEFKVL--SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SG------TTVGDFDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 95 ~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~------~~~~~~~~~~~~v~~~~~~~~~~~~l 163 (612)
....... .+.|..+.+||||.+++....+.+...+.+-... .+ .+..........+..++|.+++..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222222 2289999999999999988743322233333322 33 12222234457899999999998544
Q ss_pred EEeecCCeEEE
Q 007229 164 ATCGEDFLVNF 174 (612)
Q Consensus 164 ~~~~~d~~i~~ 174 (612)
+....++.+..
T Consensus 182 ~~~~~~~~~~~ 192 (253)
T PF10647_consen 182 LGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCceeE
Confidence 44444554444
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.14 E-value=0.0046 Score=55.61 Aligned_cols=230 Identities=12% Similarity=0.100 Sum_probs=136.5
Q ss_pred cCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee----------
Q 007229 28 PKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE---------- 97 (612)
Q Consensus 28 ~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~---------- 97 (612)
..++.|+.|.+..+++++...+.....+. +...|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 45778888885459999994333333232 333499999999887777764 599999998865532210
Q ss_pred ---eeecCCCeEEEE---ECCCCCEEEEEeCCCCeeeEEEEEecCC-----ceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 98 ---FKVLSGRIDDLQ---WSPDGLRIVACGDGKGKSFVRAFMWDSG-----TTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 98 ---~~~~~~~i~~~~---~s~~~~~l~~~~~~~~~~~i~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
.......+...+ -...+.+|+++-.. .+.++.|... +..+.+. -.+.+..++|.++ .++.|
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk----~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~ 154 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK----KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVG 154 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECC----EEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEE
Confidence 111222344444 12234455555554 4788888853 3444444 3478889999844 46666
Q ss_pred ecCCeEEEEeCCCCeeeecccc------------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 167 GEDFLVNFYEGPPFKFKLSHRE------------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
..++ ..+.|+.++.....+.. ...++..+.. +++.+|++ .|..-.+.| ..|+....... .-
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~-~~G~~~r~~~i--~W 227 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVN-KNGEPSRKSTI--QW 227 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEc-CCCCcCcccEE--Ec
Confidence 6554 88888887655433211 1123444443 34566654 344444445 45554441111 23
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
...+.++++. ..+++.... +.|.+|++ .+++.++.+....
T Consensus 228 ~~~p~~~~~~--~pyli~~~~-~~iEV~~~----~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 228 SSAPQSVAYS--SPYLIAFSS-NSIEVRSL----ETGELVQTIPLPN 267 (275)
T ss_pred CCchhEEEEE--CCEEEEECC-CEEEEEEC----cCCcEEEEEECCC
Confidence 3456677774 457777655 56999999 8999998887654
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.14 E-value=0.0028 Score=57.02 Aligned_cols=238 Identities=16% Similarity=0.101 Sum_probs=128.3
Q ss_pred CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
..++.|+.|+.+| +.+++.......... .+..+|..+...|+-+.+++-+ |+.+.++++ ...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L----~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELNLLLVLS-DGQLYVYDL----DSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccCEEEEEc-CCccEEEEc----hhhcccccccc
Confidence 3577899999888 999998444444444 2344499999999888777764 599999998 33322221100
Q ss_pred cCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE-EEecCCcEEEEEecCCcEEEEEcC
Q 007229 280 STSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT-ALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
..... .............+...+ .....+...+.......|.+|...
T Consensus 75 ~~~~~--------------------------------~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~ 122 (275)
T PF00780_consen 75 LAFPK--------------------------------SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWN 122 (275)
T ss_pred ccccc--------------------------------cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEE
Confidence 00000 000000001112222222 111113333444445588888776
Q ss_pred Ccee----eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccC----------CCcceeeecCCCC
Q 007229 359 VGYS----SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG----------SQPLDLSLALSSP 424 (612)
Q Consensus 359 ~~~~----~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 424 (612)
.... ....-.....+..+.+.++.++.+..++ ..+.|+.++........... ..+..+...++ .
T Consensus 123 ~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (275)
T PF00780_consen 123 DPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N 200 (275)
T ss_pred CCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c
Confidence 5311 1122226688889999888888877544 67778776554322111111 11222222222 3
Q ss_pred cEEEEEeeccEEEeeccccee--eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc
Q 007229 425 ELALVSTESGVILLDSLKVMS--KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 484 (612)
.+++....-++.+-..++..+ .+.-...+.++++. ..+|+.... +.|.||++.++++
T Consensus 201 e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 201 EFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred eEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcE
Confidence 555555444454444555444 34445566777774 346666555 5599999999987
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.11 E-value=0.0012 Score=61.30 Aligned_cols=242 Identities=16% Similarity=0.153 Sum_probs=126.3
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCce-------------------------------------------eeEe
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLH-------------------------------------------VEFY 55 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~-------------------------------------------~~~~ 55 (612)
.|++++|+++..-|+++. .|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988888887 78888886431110 1112
Q ss_pred ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee-eee------cCCCeEEEEECC-----CC---CEEEEE
Q 007229 56 GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE-FKV------LSGRIDDLQWSP-----DG---LRIVAC 120 (612)
Q Consensus 56 ~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~-~~~------~~~~i~~~~~s~-----~~---~~l~~~ 120 (612)
....++|++++.|.= -++|.|..+|.+.|.|+.....+... +.. ....++++.|+- |+ -.|+++
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 234689999999844 49999999999999999776643221 111 223577888862 33 345555
Q ss_pred eCCCCeeeEEEEEecCCce----eeeeccCCceEEEEE-EcCCC--------------------CEEEEEeecCCeEEEE
Q 007229 121 GDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCE-FKPTR--------------------PFRIATCGEDFLVNFY 175 (612)
Q Consensus 121 ~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~-~~~~~--------------------~~~l~~~~~d~~i~~w 175 (612)
.+.+....++|..-..+.- ......+.++|..+. |+.+. +.+++.+ .+..++++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEE
Confidence 5555321222211112221 112234666766665 32221 1123333 35679999
Q ss_pred eCCCCeeeecccccccceEEEEEC-----CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC-CccccEEEEEEecCCCE
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFS-----PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED-GHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~ 249 (612)
...+.+..............+.+- ..+..|++-..+|.++++.+..-+.+....... .....+...+++++|+.
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence 988877665543332233344452 356678888999999999999988888775421 12234446677888886
Q ss_pred EEEEeCCCcEEEEEe
Q 007229 250 VLTVSADKSAKVWEI 264 (612)
Q Consensus 250 l~~~~~dg~i~iw~~ 264 (612)
++..+. ..+.++.+
T Consensus 321 ~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 321 FYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEE-SS-SEEEEEEE
T ss_pred EEEeCc-ccEEEEEE
Confidence 666543 35555555
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.07 E-value=0.002 Score=59.33 Aligned_cols=214 Identities=16% Similarity=0.128 Sum_probs=121.6
Q ss_pred CEEEEEeCCCCceeeEecc-CCCceEEEE---ECCC----CCEEEEeeC----------cCeEEEeecCCC----ceee-
Q 007229 39 RSVLIRYLDKPLHVEFYGE-HGYPVTVAR---YSPN----GEWIASADV----------SGSVRIWGTHNG----FVLK- 95 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~-h~~~v~~~~---~s~d----~~~las~~~----------d~~i~iwd~~~~----~~~~- 95 (612)
+.|++.|..+.+.+..+.- ..+.+++++ |..+ ..+|+.|.. .|.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4678888887776655432 233444444 4433 568887752 289999999984 1122
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc-eeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT-TVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
..-....++|++++-- +++ |+++... .+.++.++..+ ....-. .....+.++....+ +++.|.....+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~g~----~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~---~I~vgD~~~sv~ 152 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAVGN----KLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN---YILVGDAMKSVS 152 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEETT----EEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT---EEEEEESSSSEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEeecC----EEEEEEccCcccchhhheecceEEEEEEecccc---EEEEEEcccCEE
Confidence 1223457889888766 444 5555544 47888888666 332221 12235666665544 588888877788
Q ss_pred EEeCC--CCeeeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCC-------CC-eeeeeeccCCccccEEEE-
Q 007229 174 FYEGP--PFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-------GE-KIGEFSSEDGHHGSIYAV- 241 (612)
Q Consensus 174 ~wd~~--~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------~~-~~~~~~~~~~~~~~v~~i- 241 (612)
++... ..+....-+ .....++++.|-++++.++.+..+|.+.++.... +. .+...... .....|+++
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~ 231 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFR 231 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEE
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEE
Confidence 77433 322222212 2345688899987777899999999999998752 22 22222111 344567776
Q ss_pred --EEec--CCC------EEEEEeCCCcEEEE
Q 007229 242 --SWSP--DGK------KVLTVSADKSAKVW 262 (612)
Q Consensus 242 --~~~~--~~~------~l~~~~~dg~i~iw 262 (612)
++.| .+. .++.++.+|.|-..
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4444 122 37778889988744
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3e-05 Score=72.13 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=80.3
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceE-EEEEcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAIT-VIQYSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
.+..+.-+.|+|.-.++|.+..+|.|.++.+.-.+ ..+++-|+..++ +++|.|||+.||.|-.||+|++.|++++.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR---LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccce---eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 34467889999999999999999999999988433 466776777777 99999999999999999999999999998
Q ss_pred eeeecccccccceeEEEecC
Q 007229 528 VKLNNMLFHTARINCLAWSP 547 (612)
Q Consensus 528 ~~~~~~~~~~~~i~~~~~s~ 547 (612)
.+......-...|.++.|+|
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 87554444567788888864
No 367
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0071 Score=51.37 Aligned_cols=275 Identities=9% Similarity=0.014 Sum_probs=162.8
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc-cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV-KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
.+....+..++.+.+..+.-++++|+..+..+...-.-.. +--.++.. . +++...+..|.-+.+.|+.+.....+.
T Consensus 88 l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-s--Gn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 88 LFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-S--GNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-c--CCEEEEeeccCcEEEEECCCCCCceee
Confidence 3444556688899999999999999999887765443333 22223322 3 889999988888889999887776655
Q ss_pred ee---cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccc
Q 007229 367 KK---YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKV 443 (612)
Q Consensus 367 ~~---~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (612)
.. ....-..++..+++-+.+..++-+.+.|+...... ..
T Consensus 165 grya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sP--------------------------------------vl 206 (370)
T COG5276 165 GRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSP--------------------------------------VL 206 (370)
T ss_pred eeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCC--------------------------------------eE
Confidence 44 33444678889999999999999999998876533 11
Q ss_pred eeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 444 MSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 444 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
+........+.++..+++..+++...+ -+.+-|..+.+-....-.....+++..-.|.-.+++...+..+.-+.+-|+
T Consensus 207 i~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idi 284 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDI 284 (370)
T ss_pred EEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEec
Confidence 112222235777888888777776554 367777765543112212222222222133335667777777777778887
Q ss_pred CCcceee--ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccC
Q 007229 524 VSKEVKL--NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGE 600 (612)
Q Consensus 524 ~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~ 600 (612)
++..... ..+......-..+.. .+.++..+..+ ...+-+...+ +..-...+....+.+.+.+ +.+.+.+...
T Consensus 285 snp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~--s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 285 SNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-TGAVVDASPP--SMMDKRPGRPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred cCCCCCchhccccCCCccccceEE--ecCeeEeccCC-ceEEEeCCCh--hhcccccCcceEeeecceEEEeeEEEEeec
Confidence 7654321 111101112223333 23455555444 3444454431 1111122222234445555 6668888899
Q ss_pred CCeEEEEEec
Q 007229 601 DACIRVWRLA 610 (612)
Q Consensus 601 d~~i~~w~~~ 610 (612)
++-+.+|+.-
T Consensus 360 ~~gl~i~~~~ 369 (370)
T COG5276 360 NGGLSIIEYL 369 (370)
T ss_pred CCCEEEEEec
Confidence 9999999853
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.99 E-value=0.0097 Score=54.80 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=123.3
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-----CCEEEEEEc---------C-CEEEEEEcCCCC---CC
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-----NDHLITVSL---------G-GIISIFSASNLD---KA 319 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---------~-~~i~~~~~~~~~---~~ 319 (612)
.|++.|. .+.+.+..+.....+........-... ...+++|+. . |.+.+|++.... ..
T Consensus 3 ~i~l~d~----~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 3 SIRLVDP----TTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp EEEEEET----TTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred EEEEEeC----CCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence 4566666 566666666555433332222211111 345666654 2 889999988841 11
Q ss_pred ce--eecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce-eeeecee-cccceEEEEeeccEEEEecCCCeEEEE
Q 007229 320 PL--SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY-SSKLEKK-YDARIKCLAAVEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 320 ~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~~i~~~ 395 (612)
+. .-....++|.+++... +. ++.+. ++.|.+|++...+ ....... ....+.++...+++++.+.....+.++
T Consensus 79 l~~i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEE
Confidence 22 2234567888888774 44 44333 4899999998888 3333222 445778888888899999888877777
Q ss_pred ecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEE
Q 007229 396 PLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLH 475 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 475 (612)
....... .+.. +..-..+..++++.|-++++.++++..+|.+.
T Consensus 155 ~~~~~~~----------------------~l~~---------------va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 155 RYDEENN----------------------KLIL---------------VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp EEETTTE-----------------------EEE---------------EEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred EEEccCC----------------------EEEE---------------EEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 5543211 0111 11111234588888887767999999999999
Q ss_pred EEEccCc---------ccccceeeccccCceEEE---EEcCC--C------cEEEEEcCCCeEEEE
Q 007229 476 IYSISGN---------TLTEEMVLEKHRGAITVI---QYSPD--V------SMFASADGNREAIVW 521 (612)
Q Consensus 476 i~d~~~~---------~~~~~~~~~~~~~~i~~~---~~s~~--~------~~l~~~~~d~~i~iw 521 (612)
++..... ++.....+ .....|+++ .+.|. + ..++.++.+|.|...
T Consensus 198 ~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 198 VLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9988632 11111111 223567777 55552 2 247888889988844
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.96 E-value=0.001 Score=66.47 Aligned_cols=145 Identities=18% Similarity=0.146 Sum_probs=98.2
Q ss_pred CcEEEEE-ecCCcEEEEEcCCceeeeeceecc-cceEEEEee-------ccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 340 QQTILSS-SYDGAIIKWIRGVGYSSKLEKKYD-ARIKCLAAV-------EEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 340 ~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~-------~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
.++++.. .....|+-.|+..++.+.....+. .+|..++.+ +...+.|-.+..+..||.+-....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k------- 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK------- 565 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-------
Confidence 4555543 355788889999998887666544 336776662 445677777778888887643210
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL 490 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 490 (612)
+ ++. ....+..+...+|++-+.+| +||+|+.+|.|++||--+. .....+
T Consensus 566 ---------------~----------v~~---~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~--~AKT~l 614 (794)
T PF08553_consen 566 ---------------L----------VDS---QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK--RAKTAL 614 (794)
T ss_pred ---------------e----------eec---cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccch--hhhhcC
Confidence 0 000 01112234457788888777 6999999999999995432 235667
Q ss_pred ccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 491 EKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
++-..+|..|..+.||++++..+. ..+.+++.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 788899999999999999887765 46777765
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.9e-05 Score=70.79 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=80.7
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceE-EEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVN-CIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
...+..+.|+|.-+ ++|++..+|.+.+..+. .+.+.++.-|..+++ +++|.|||+.|++|-.||+|++.|.+++..+
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34677889999988 79999999999999888 777778876777777 9999999999999999999999999999988
Q ss_pred eeeeccCCccccEEEEEEec
Q 007229 226 GEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~ 245 (612)
... ......+|.++-|.+
T Consensus 98 ~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSF--LFSVETDISKGIWDR 115 (665)
T ss_pred ecc--ccccccchheeeccc
Confidence 874 125667788888863
No 371
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.94 E-value=0.016 Score=53.23 Aligned_cols=238 Identities=16% Similarity=0.101 Sum_probs=123.1
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCce---eeEe----ccCCCceEEEEECCC----CCEEEEeeCc--------
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLH---VEFY----GEHGYPVTVARYSPN----GEWIASADVS-------- 80 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~---~~~~----~~h~~~v~~~~~s~d----~~~las~~~d-------- 80 (612)
...+|+|.|||+.+++-..|.|.+++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46789999999988887799999999 44433 2222 234567899999994 4433333321
Q ss_pred CeEEEeecCCC-------ceeeeeeee---cCCCeEEEEECCCCCEEEEEeCCCCe--------eeEEEEEec-CCce--
Q 007229 81 GSVRIWGTHNG-------FVLKNEFKV---LSGRIDDLQWSPDGLRIVACGDGKGK--------SFVRAFMWD-SGTT-- 139 (612)
Q Consensus 81 ~~i~iwd~~~~-------~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~~--------~~i~i~~~~-~~~~-- 139 (612)
..|.-|..... +.+...+.. ....-..|+|.|||.+.++.++.... ..-.|...+ .++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24555555544 112222222 22355679999999888888766531 011222222 2221
Q ss_pred -----------eeeeccCCceEEEEEEcCC-CCEEEEE-eecCCeEEEEeCCCCe-------------------------
Q 007229 140 -----------VGDFDGHSRRVLSCEFKPT-RPFRIAT-CGEDFLVNFYEGPPFK------------------------- 181 (612)
Q Consensus 140 -----------~~~~~~~~~~v~~~~~~~~-~~~~l~~-~~~d~~i~~wd~~~~~------------------------- 181 (612)
...+..--.....++|+|. +. +.++ -+.+..=.|--+..+.
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0111111123467899999 65 2332 2333222222111110
Q ss_pred ----eeecccccccceEEEEECC-------CCCeEEEEEcCCcEEEEecCCCCeeeeeec-cCCccccEEEEEEecCCCE
Q 007229 182 ----FKLSHREHSNFVNCIRFSP-------DGSKLISVSSDRKGLIYDGKSGEKIGEFSS-EDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 182 ----~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~ 249 (612)
+...+. +...+..+.|-. .|.++++.-..+.|....++.+..+..... .......+..+++.|||.+
T Consensus 241 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 111122 234566677653 344555544456777777765543322211 2244558999999999998
Q ss_pred EEEEeCCCcEE
Q 007229 250 VLTVSADKSAK 260 (612)
Q Consensus 250 l~~~~~dg~i~ 260 (612)
.++...+|.|.
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 88887788763
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.91 E-value=0.017 Score=52.41 Aligned_cols=226 Identities=17% Similarity=0.106 Sum_probs=111.5
Q ss_pred EEEccCCCEEEEecC----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeee
Q 007229 24 ISGNPKTDTILYCNG----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 24 ~~~s~d~~~l~~~~~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
=+|.+||+.|+++++ ..+++.|+++++..+.-.+-........++|+.+.++-......|+--|+.+.+ ......
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEEEEE
Confidence 468899998888762 589999999998877433322333357788998888766566789999999987 444555
Q ss_pred ecCCCeEEEEE--CCCCCEEEEEeCCCCe-------------------eeEEEEEecCCceeeeeccCCceEEEEEEcCC
Q 007229 100 VLSGRIDDLQW--SPDGLRIVACGDGKGK-------------------SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 100 ~~~~~i~~~~~--s~~~~~l~~~~~~~~~-------------------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (612)
.....+-...| ..|+..++..-..... ..+.-.+..+|+.. .+-.-...+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCccccCcccCCC
Confidence 55555555666 4466666544321100 01222222344332 23334556778899999
Q ss_pred CCEEEEEeec---CC-eEEEEeCCC-Ceeeeccccc--ccceEEEEECCCCCeEEEEEc-----CCcEEEEecCCCCeee
Q 007229 159 RPFRIATCGE---DF-LVNFYEGPP-FKFKLSHREH--SNFVNCIRFSPDGSKLISVSS-----DRKGLIYDGKSGEKIG 226 (612)
Q Consensus 159 ~~~~l~~~~~---d~-~i~~wd~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~ 226 (612)
.+.+++-|-+ +. .-|+|-+.+ +.....+..+ ...+..=-|.|||..+..-+. +..|.-+|+.+++...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 8876666533 22 135664322 2212222222 233444468999987765333 3457778888876644
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCC
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 256 (612)
.. ....-..+--++||++++-=+.|
T Consensus 279 ~~-----~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 279 LM-----EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-----EE-SEEEEEE-TTSSEEEEEE--
T ss_pred EE-----eCCceeeeEEcCCCCEEEecCCC
Confidence 33 11233455567888866654443
No 373
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.90 E-value=3.9e-05 Score=44.43 Aligned_cols=38 Identities=32% Similarity=0.658 Sum_probs=34.2
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
+....+..|...|.++.|.++++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778999999999999999999999999999996
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.89 E-value=4.3e-06 Score=77.49 Aligned_cols=204 Identities=13% Similarity=0.023 Sum_probs=125.3
Q ss_pred ceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCCCeee--ecccccccceEEEEECC-CCCeEEEEEc----CCcEEEEec
Q 007229 148 RRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPPFKFK--LSHREHSNFVNCIRFSP-DGSKLISVSS----DRKGLIYDG 219 (612)
Q Consensus 148 ~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~----dg~i~vwd~ 219 (612)
..+.|++..-+. +-+++.|..+|.|-+-..+...-. ....++..+.++++|++ |.+.||+|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 344555443322 237888999999988876543322 23567788899999998 5567776633 567999999
Q ss_pred CCC--CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 220 KSG--EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 220 ~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
.++ .+........+......+++|..+.+++++|.....++++|++....+...+.+ .. . ..+..-.|..+
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT---k~---v-qG~tVdp~~~n 209 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT---KY---V-QGITVDPFSPN 209 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh---hh---c-ccceecCCCCC
Confidence 877 222211111123345568899989999999998889999998321111111111 00 0 01111122344
Q ss_pred EEEEEEcCCEEEEEE-cCCCCCCceeecCccc----ceeEEEEEecCCcEEEEEecC-CcEEEEEcCC
Q 007229 298 HLITVSLGGIISIFS-ASNLDKAPLSFSGHVK----NVSTLTALKISQQTILSSSYD-GAIIKWIRGV 359 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~d-g~i~~wd~~~ 359 (612)
++ +...+|.+.+|| ....+.++........ .+..++|++.....+++...| ++|+++|+..
T Consensus 210 Y~-cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YF-CSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ce-eccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 44 445599999999 5555555554443333 488999995546666666554 7899998753
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.89 E-value=0.0099 Score=59.74 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=93.8
Q ss_pred CCEEEEe-eCcCeEEEeecCCCceeeeeeeecCCC-eEEEEECC------CCCEEEEEeCCCCeeeEEEEEec---CCce
Q 007229 71 GEWIASA-DVSGSVRIWGTHNGFVLKNEFKVLSGR-IDDLQWSP------DGLRIVACGDGKGKSFVRAFMWD---SGTT 139 (612)
Q Consensus 71 ~~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~s~------~~~~l~~~~~~~~~~~i~i~~~~---~~~~ 139 (612)
.++|+.- .....|.-.|++.|+ +......+... |..++=.. +.+.++..+.+. ++.|| .+.+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~------lfriDpR~~~~k 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNS------LFRIDPRLSGNK 565 (794)
T ss_pred cceEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCc------eEEeccCCCCCc
Confidence 3444443 355789999999998 66677776654 54443211 223444444443 77777 2322
Q ss_pred eeeec----cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 140 VGDFD----GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 140 ~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
+..-. .......|++-+.+| .+|.|+.+|.||+||--..+....+.+-..+|..|..+.||+++++.+ +..+.
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred eeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEE
Confidence 22211 233567888888888 499999999999999544444445778889999999999999998766 56788
Q ss_pred EEecC
Q 007229 216 IYDGK 220 (612)
Q Consensus 216 vwd~~ 220 (612)
+++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88753
No 376
>PRK10115 protease 2; Provisional
Probab=97.87 E-value=0.043 Score=56.02 Aligned_cols=239 Identities=5% Similarity=-0.078 Sum_probs=120.2
Q ss_pred ceeEEEEccCCCEEEEecC------CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc------CeEEEee
Q 007229 20 RGILISGNPKTDTILYCNG------RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS------GSVRIWG 87 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d------~~i~iwd 87 (612)
.+..+.+||||++|+++.+ ..|++.|+.+++.+........ ..++|++|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4777899999999999963 2899999998874332222222 469999999877665432 3688888
Q ss_pred cCCCce-eeeeeeecCCCeE-EEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEE
Q 007229 88 THNGFV-LKNEFKVLSGRID-DLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 163 (612)
+.++.. ....+........ ....+.|+++++..+.......+.++..+ .++....+....+....+. +..+.+.+
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 888732 2223333333333 33445588887766555443234444422 3332222222222222222 33343333
Q ss_pred EEeec--CCeEEEEeCC-CCeeeecccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCeeeeeeccCCccccE
Q 007229 164 ATCGE--DFLVNFYEGP-PFKFKLSHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 164 ~~~~~--d~~i~~wd~~-~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v 238 (612)
.+-.. ...|...++. +++....+.... ..+..+.++ .+.++++...++.-+++-+.. +..+..+.. .....+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~~~ 361 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAF--DDPAYV 361 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecC--CCCceE
Confidence 33222 2233333444 222222232223 367778877 334555556666655544332 233333310 112223
Q ss_pred EEEEEe--cCCC-EEEEEeC---CCcEEEEEe
Q 007229 239 YAVSWS--PDGK-KVLTVSA---DKSAKVWEI 264 (612)
Q Consensus 239 ~~i~~~--~~~~-~l~~~~~---dg~i~iw~~ 264 (612)
..+.++ +++. ++++.+. -+.+..+|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 393 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDM 393 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEEC
Confidence 333344 3333 3433332 256777776
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.85 E-value=0.019 Score=52.54 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCCEEEEEeecCCeEEEEeCCC----Ceeeecccc---cc----cceEEEEECCCCCeEEEEEc------CCcEEEEecC
Q 007229 158 TRPFRIATCGEDFLVNFYEGPP----FKFKLSHRE---HS----NFVNCIRFSPDGSKLISVSS------DRKGLIYDGK 220 (612)
Q Consensus 158 ~~~~~l~~~~~d~~i~~wd~~~----~~~~~~~~~---~~----~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~ 220 (612)
+.+++++-|-..+.|.+.|+.+ .+..+.+.. +. .....+-.-|+|+.++++-. -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 4566677777889999999773 333333332 11 22334455689988887532 2568888988
Q ss_pred CCCeeeeeeccCCccccEEEEEEecCCCEEEEEe--------------------CCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 221 SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS--------------------ADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------------------~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
+.+.............--..+-|.|..+.+++.. ...++.+||+ ...+.++++...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~----~~r~~~Q~idLg 241 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW----STRKLLQTIDLG 241 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET----TTTEEEEEEES-
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC----CCCcEeeEEecC
Confidence 7777777643333344556777888888888753 1246888888 788888777665
Q ss_pred C
Q 007229 281 T 281 (612)
Q Consensus 281 ~ 281 (612)
.
T Consensus 242 ~ 242 (461)
T PF05694_consen 242 E 242 (461)
T ss_dssp T
T ss_pred C
Confidence 3
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.011 Score=50.09 Aligned_cols=232 Identities=15% Similarity=0.148 Sum_probs=128.9
Q ss_pred EEEEEEcCCCCEEEEEeecCCeE-EEEeCCCCeeeecccccccc--eEEEEECCCCCeEEEEEcC-----CcEEEEecCC
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLV-NFYEGPPFKFKLSHREHSNF--VNCIRFSPDGSKLISVSSD-----RKGLIYDGKS 221 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i-~~wd~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~ 221 (612)
-..++|+|..+.-++.+-.-|+. .++|....+...++...++. .-.=.|||||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34578888877667777666654 67888777665543321111 1122699999998875443 6788999874
Q ss_pred C-CeeeeeeccCCccccEEEEEEecCCCEEEEEeC------C------------CcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 222 G-EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA------D------------KSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 222 ~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------d------------g~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
+ +.+.++ ..|.-....+.+.+||+.++.+.. | -++.+.|. .+++++.+...+..
T Consensus 150 ~fqrvgE~---~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~----atG~liekh~Lp~~ 222 (366)
T COG3490 150 GFQRVGEF---STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA----ATGNLIEKHTLPAS 222 (366)
T ss_pred ccceeccc---ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEec----cccchhhhccCchh
Confidence 3 234444 367777788999999999887642 0 12233333 34444443333211
Q ss_pred cccceeeeeeecc-CCEEEEEE-----------------cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 283 NAVEDMLVGCLWQ-NDHLITVS-----------------LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
... ..+..+... ++.+.++. ..+.+..+++. ..........|-+++....++-..+
T Consensus 223 l~~-lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~p-----ee~~~~~anYigsiA~n~~~glV~l 296 (366)
T COG3490 223 LRQ-LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLP-----EEQTAAFANYIGSIAANRRDGLVAL 296 (366)
T ss_pred hhh-cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCC-----HHHHHHHHhhhhheeecccCCeEEE
Confidence 100 011111111 12222221 11111111111 1112223446677777744466666
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
+.-..+...+||..++....... -.....+....+-++..+.+|.+.++.
T Consensus 297 TSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 297 TSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ecCCCCeEEEEEcCCCcEEeccc--ccccccceeccCceEEecCCceEEecc
Confidence 77777788999999988765432 223344555666777788888888774
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.83 E-value=9.7e-06 Score=75.28 Aligned_cols=193 Identities=17% Similarity=0.202 Sum_probs=123.0
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCC-ceeecCcccceeEEEEEecCCcEEEEEec----CCcEEEEEcCCceeeeeceeccc
Q 007229 297 DHLITVSLGGIISIFSASNLDKA-PLSFSGHVKNVSTLTALKISQQTILSSSY----DGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
..+.+|..+|.|.+-..+.+... ....+++....++++|.+-+.+.|+.|-. |..+.+||+.+........
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~---- 146 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES---- 146 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc----
Confidence 45778888899999887776554 56677889999999999655777777643 3456667665542211000
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
|.+.+ ....
T Consensus 147 -----------------------~~fs~------------------------------------------------~~l~ 155 (783)
T KOG1008|consen 147 -----------------------PLFSS------------------------------------------------STLD 155 (783)
T ss_pred -----------------------ccccc------------------------------------------------cccc
Confidence 00000 0001
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEec-CCccee
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDR-VSKEVK 529 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~-~~~~~~ 529 (612)
...++++-.+.+++.+|.....+.++|++.... ....-.+..+..+...| .+.++++-. ||.|.+||. .+-+..
T Consensus 156 gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~---~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp 231 (783)
T KOG1008|consen 156 GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD---SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP 231 (783)
T ss_pred CccccccccCcchhhcccccchhhhhhhhhhhh---hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH
Confidence 234677778899999999999999999974322 11111233566677888 777887765 899999993 333322
Q ss_pred eeccccc----ccceeEEEecCCCc-EEEEeec-CcEEEEEEccC
Q 007229 530 LNNMLFH----TARINCLAWSPSST-MVATGSI-DTCVIIYEIGK 568 (612)
Q Consensus 530 ~~~~~~~----~~~i~~~~~s~~~~-~l~s~~~-d~~i~iwd~~~ 568 (612)
....... ...+..++|+|-.. .|++... .++|+++|+..
T Consensus 232 l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 232 LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 2222211 23489999999543 5666654 46899999864
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.78 E-value=0.014 Score=47.76 Aligned_cols=217 Identities=12% Similarity=0.066 Sum_probs=126.5
Q ss_pred EEEccCCCEEEEec--CCEEEEEeCCCCceeeE-eccCCCceEEEEECCCC---CEEEEeeCcCeEEEeecCCCce-eee
Q 007229 24 ISGNPKTDTILYCN--GRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNG---EWIASADVSGSVRIWGTHNGFV-LKN 96 (612)
Q Consensus 24 ~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~---~~las~~~d~~i~iwd~~~~~~-~~~ 96 (612)
..|.-+.+.|.+.. .+.|.-||.++.+..+. +++.. ...+.+--.| .+.+.++..-.|.-||-..... +..
T Consensus 20 p~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~ 97 (310)
T KOG4499|consen 20 PHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYR 97 (310)
T ss_pred CceEEecceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeee
Confidence 44555566666665 57777799887665443 33221 3333332222 2344444443455677443221 222
Q ss_pred eee-----ecCCCeEEEEECCCCCEEEEEeCCCCe----eeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 97 EFK-----VLSGRIDDLQWSPDGLRIVACGDGKGK----SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 97 ~~~-----~~~~~i~~~~~s~~~~~l~~~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
++. ......+.-..+|+|++.+-.-.+... .-..++.|..+..+..+...-.--..++|+.+.+.+.++-+
T Consensus 98 t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 98 TLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred eccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc
Confidence 211 123456677789999996544333221 01124444444333333333344467889888876677888
Q ss_pred cCCeEEEEe--CCCCee-----eecccc----cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 168 EDFLVNFYE--GPPFKF-----KLSHRE----HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 168 ~d~~i~~wd--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
.+-+|.-|| .++|.. +..++. .......+++..+|++.+++-..++|...|+.+|+.+.++. -...
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik---lPt~ 254 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK---LPTP 254 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE---cCCC
Confidence 888898887 555543 222222 11223445666678887877888999999999999999995 4477
Q ss_pred cEEEEEEec
Q 007229 237 SIYAVSWSP 245 (612)
Q Consensus 237 ~v~~i~~~~ 245 (612)
.+++++|--
T Consensus 255 qitsccFgG 263 (310)
T KOG4499|consen 255 QITSCCFGG 263 (310)
T ss_pred ceEEEEecC
Confidence 899999964
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.013 Score=49.99 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=116.6
Q ss_pred ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
+.+-...+.++.|+|+.+.|++......-.|+=..+|+.+.++... .-.....+.+..++++.++--.++.+.++.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc--ccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4455566999999999999999998888888888889999988543 23456688899889888887778899999884
Q ss_pred cCCCCCeeEe-eeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCce--eecCc-------ccceeEE
Q 007229 266 EDGSGGRVIK-TFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPL--SFSGH-------VKNVSTL 333 (612)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~-------~~~v~~~ 333 (612)
.+........ .+............-+++|+ +..++++-+.+-+.+|.......... ....+ -..+.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 3211111111 33333333334455667776 77889999988888888664432211 11111 2345666
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
.|....+.+++-+.+++.+...|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 676555777777777777777776654
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.016 Score=51.82 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=90.2
Q ss_pred ceEEEEEEccCCCeEEEEec-----------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC-CCeE
Q 007229 451 FTVTACAIAPDGSEAIVGGQ-----------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG-NREA 518 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i 518 (612)
...+...+.|+|.+.+.... -|.|+.++. .+.. ...+..+-..-+.|+||||++.|..+.. .+.|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~--~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV--VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE--EEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 34567888999887776444 134555554 3333 3444444556678999999987777765 4778
Q ss_pred EEEecCC--cce----eeecccccccceeEEEecCCCcEEEEeecCc-EEEEEEccCCCcceeeeecccccCeeeEEEe-
Q 007229 519 IVWDRVS--KEV----KLNNMLFHTARINCLAWSPSSTMVATGSIDT-CVIIYEIGKPASSRITIKNAHLGGVYGVAFM- 590 (612)
Q Consensus 519 ~iwd~~~--~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~- 590 (612)
.-|++.. +.. .........+..-.++...+|.+-+++-.+| .|..|+.+. +++....-....+++++|-
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG---~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG---KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC---cEEEEEECCCCCCccceEeC
Confidence 8887753 111 1111222345556677777888775555554 899999883 6666666666789999998
Q ss_pred c-Cce-EEEccC
Q 007229 591 D-DFN-VVSSGE 600 (612)
Q Consensus 591 ~-~~~-l~s~~~ 600 (612)
+ .+. ++++..
T Consensus 265 ~~~~~L~iTs~~ 276 (307)
T COG3386 265 PDLNTLYITSAR 276 (307)
T ss_pred CCcCEEEEEecC
Confidence 3 344 444433
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.73 E-value=0.018 Score=50.41 Aligned_cols=147 Identities=20% Similarity=0.156 Sum_probs=92.7
Q ss_pred CcceeeecCCCCcEEEEE---eeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEE-ccCcccccce
Q 007229 413 QPLDLSLALSSPELALVS---TESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYS-ISGNTLTEEM 488 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d-~~~~~~~~~~ 488 (612)
.....++++++..++++. ....+.................++...|++++...++...+...+++. ..++......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 577889999998888777 233355555444444443445788899999988888777677666664 3333322111
Q ss_pred e-eccccCceEEEEEcCCCcEEEEEc---CCCeEEEEecC---Cc--cee---eecccccccceeEEEecCCCcEEEEee
Q 007229 489 V-LEKHRGAITVIQYSPDVSMFASAD---GNREAIVWDRV---SK--EVK---LNNMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 489 ~-~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~iwd~~---~~--~~~---~~~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
. ...-.+.|+.+.+||||..+|... .++.|.+=-+. .+ ..+ ..........++.+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 1 111112899999999999888765 34777776543 22 111 111222346789999999999877665
Q ss_pred cCc
Q 007229 557 IDT 559 (612)
Q Consensus 557 ~d~ 559 (612)
..+
T Consensus 185 ~~~ 187 (253)
T PF10647_consen 185 SAG 187 (253)
T ss_pred CCC
Confidence 433
No 384
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.68 E-value=0.0049 Score=44.28 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=68.4
Q ss_pred eEEEEEcC-CC---cEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc
Q 007229 497 ITVIQYSP-DV---SMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS 572 (612)
Q Consensus 497 i~~~~~s~-~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 572 (612)
|++|++.. ++ +.|++|++|..||+|+-.. .+.+ +. ..+.|++++-... ..++.+..+|+|-+|+-.. +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E-i~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE-IT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE-Ee-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc---e
Confidence 66777765 22 6899999999999998543 3322 22 3567888887766 5688899999999998754 3
Q ss_pred eeeeecccccCeeeEEEe--cC---ceEEEccCCCeEE
Q 007229 573 RITIKNAHLGGVYGVAFM--DD---FNVVSSGEDACIR 605 (612)
Q Consensus 573 ~~~~~~~h~~~v~~~~~~--~~---~~l~s~~~d~~i~ 605 (612)
.......|. ++++.+. ++ ..|++|-.+|.|-
T Consensus 74 lWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344333333 6677666 22 1499998898874
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00025 Score=70.67 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=79.9
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
.++-.-.+..++.|+..|.+-..|+...-.....-..-.++|++++|+.||++++.|-.+|.|.+||+.. + +.++.+.
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~-k~l~~i~ 169 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A-KILKVIT 169 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-C-cceeeee
Confidence 3333335668889998899998888764322122233467999999999999999999999999999998 6 6777777
Q ss_pred ccccCeeeEEEe----cCceEEEccCCCeEEEEEe
Q 007229 579 AHLGGVYGVAFM----DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 579 ~h~~~v~~~~~~----~~~~l~s~~~d~~i~~w~~ 609 (612)
.|..+.+++-+. ++..++++...|. +|++
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 777777766655 4556888887776 6765
No 386
>PHA02713 hypothetical protein; Provisional
Probab=97.63 E-value=0.0074 Score=59.83 Aligned_cols=149 Identities=16% Similarity=0.185 Sum_probs=85.1
Q ss_pred cCCCeEEEEecCC-----eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC------------------
Q 007229 460 PDGSEAIVGGQNG-----KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR------------------ 516 (612)
Q Consensus 460 ~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~------------------ 516 (612)
-+++..+.|+.++ .+..||..+++......+.........++ -+++..+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3577777887654 48899998877643333332222222222 3677888887652
Q ss_pred -----eEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecC------cEEEEEEccC-CCcceeeeecccccCe
Q 007229 517 -----EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSID------TCVIIYEIGK-PASSRITIKNAHLGGV 584 (612)
Q Consensus 517 -----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d------~~i~iwd~~~-~~~~~~~~~~~h~~~v 584 (612)
.+..||..+.+-.... .-.......-...-++++.+.|+.+ ..+..||.++ ..+..+..+.......
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~-~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLP-NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred ccccceEEEECCCCCeEeecC-CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 4777887776432111 1011111111222367777777754 2467899887 4545555554433333
Q ss_pred eeEEEecCceEEEccCCC--eEEEEEeccC
Q 007229 585 YGVAFMDDFNVVSSGEDA--CIRVWRLATE 612 (612)
Q Consensus 585 ~~~~~~~~~~l~s~~~d~--~i~~w~~~~~ 612 (612)
.++..+++..+.||.|+ .+..||..++
T Consensus 507 -~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 507 -HTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred -eeEEECCEEEEEeeecceeehhhcCcccc
Confidence 23333788889999888 7777777653
No 387
>PRK13684 Ycf48-like protein; Provisional
Probab=97.63 E-value=0.053 Score=49.93 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=89.1
Q ss_pred cceEEEEEEccCCCeEEEEecCCeEEEE-EccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 450 GFTVTACAIAPDGSEAIVGGQNGKLHIY-SISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~~~~~dg~v~i~-d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
...+..+.+.|++.+++++. .|.+..- +-...... .....-...++++.+.|+++.++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~--~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWT--PHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEE--EeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999987776654 4544432 22212231 1222334678999999999887765 457665333344432
Q ss_pred eeecccc---cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec---ccccCeeeEEEecCceEEEccCCC
Q 007229 529 KLNNMLF---HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN---AHLGGVYGVAFMDDFNVVSSGEDA 602 (612)
Q Consensus 529 ~~~~~~~---~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~s~~~d~ 602 (612)
-.....+ ....+.++.+.|++..+++ +.+|.+. ...+. + +...... .-......+.|.+++..+.++..|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~-G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDG-G-KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCC-C-CCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 1111110 1245788999998876554 4677554 34443 3 3333332 223457788888556667778889
Q ss_pred eEEEEEec
Q 007229 603 CIRVWRLA 610 (612)
Q Consensus 603 ~i~~w~~~ 610 (612)
.|..|+-.
T Consensus 324 ~il~~~~~ 331 (334)
T PRK13684 324 VLLRYVGS 331 (334)
T ss_pred eEEEecCC
Confidence 99887643
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.59 E-value=0.053 Score=50.52 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=56.1
Q ss_pred eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccc-eeEEEecCC-----------------CcE
Q 007229 490 LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR-INCLAWSPS-----------------STM 551 (612)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~s~~-----------------~~~ 551 (612)
+......+.+++.+|++++.|+.+.=|.|.++|+.++..+ ..+++..+. +.-+..... ..+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-hhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3344456889999999999999988899999999998875 445543321 111111100 112
Q ss_pred -EEEeecCcEEEEEEccCCCcceeeeec
Q 007229 552 -VATGSIDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 552 -l~s~~~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
++-+-.-|.|.||.++. + .++..+.
T Consensus 382 LvIyaprRg~lEvW~~~~-g-~Rv~a~~ 407 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQ-G-PRVAAFN 407 (415)
T ss_pred EEEEeccCCeEEEEecCC-C-CEEEEEE
Confidence 34556788999999998 5 5554443
No 389
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.58 E-value=0.094 Score=51.67 Aligned_cols=112 Identities=7% Similarity=0.052 Sum_probs=61.7
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee------eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCc
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM------LVGCLWQNDHLITVSLGGIISIFSASNLDKAP 320 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 320 (612)
+..+++++.++.|.-+|. .+++.+-.+........... .......++.+++++.++.+.-+|..+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa----~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDA----KTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEEC----CCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 345666777788888888 78888777665322111110 01123346788889999999999976655443
Q ss_pred eeecC-cc--cceeEEEEEecCCcEEEEEec------CCcEEEEEcCCceeee
Q 007229 321 LSFSG-HV--KNVSTLTALKISQQTILSSSY------DGAIIKWIRGVGYSSK 364 (612)
Q Consensus 321 ~~~~~-~~--~~v~~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~ 364 (612)
..-.. +. ..+.+--... +..++.+.. +|.|..+|.++++..-
T Consensus 145 ~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred ecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 32211 11 1111111111 334444432 5677777777776543
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.58 E-value=0.00019 Score=41.30 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=33.2
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
+....+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999996
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.043 Score=47.08 Aligned_cols=162 Identities=10% Similarity=0.066 Sum_probs=112.9
Q ss_pred CCCCceeEEEEccCCCEEEEecC-CEEEEEeCCCCceeeEecc-CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 16 TERGRGILISGNPKTDTILYCNG-RSVLIRYLDKPLHVEFYGE-HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~-~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
+....++++.|+|+.+.|++..+ ..-.|+=...|+.++++.- --..-..+++..+|++.++--.++.+.+..+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 45567999999999999988875 4555555566788776531 123445789999999999998999999988876532
Q ss_pred ee------eeee--ec-CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc---eeeeeccCC-------ceEEEEE
Q 007229 94 LK------NEFK--VL-SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT---TVGDFDGHS-------RRVLSCE 154 (612)
Q Consensus 94 ~~------~~~~--~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~-------~~v~~~~ 154 (612)
.. ..+. .+ +.+...++|.|..+.|..+-+.+ -+.|+.++.+. ..+....++ ..|..+.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~---P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN---PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC---CcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 11 1111 12 55788999999999998887777 46788887332 111122222 3467788
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCC
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPF 180 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~ 180 (612)
|.+..+.+++-+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 99877778888888888887775543
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.00017 Score=58.51 Aligned_cols=142 Identities=11% Similarity=-0.012 Sum_probs=79.2
Q ss_pred EEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEE
Q 007229 74 IASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLS 152 (612)
Q Consensus 74 las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~ 152 (612)
|..-+.||.|+=+++...+.-.+.-..+... ...-.-+..++.++.++ .+.+|.|+. +.....+..-...|.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg---~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDG---AVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccc---eEEEecCCccchHHHhhhccccccee
Confidence 3334567777777766544211111112222 11122345677777776 577888872 2222222222233333
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc-cceEEEEECCCCCeEEEE--EcCCcEEEEecCC
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-NFVNCIRFSPDGSKLISV--SSDRKGLIYDGKS 221 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~ 221 (612)
+--.-+...+..++..||.|+.|+.+..+.+.....|+ .++..+..+..++.++.+ +.|..++.|+++.
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 32222222268999999999999999988887776776 455555555555555555 5566666666553
No 393
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.52 E-value=0.017 Score=41.62 Aligned_cols=101 Identities=8% Similarity=0.168 Sum_probs=67.7
Q ss_pred EEEEEE---cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 150 VLSCEF---KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 150 v~~~~~---~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
|+++++ ..+|..-|+.|+.|..||+|+-. +.+..+. ..+.|.++.-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 445544 44555679999999999999855 4444454 3456888877766 46888999999999984 33344
Q ss_pred eeeccCCccccEEEEEEec-CC---CEEEEEeCCCcEE
Q 007229 227 EFSSEDGHHGSIYAVSWSP-DG---KKVLTVSADKSAK 260 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~-~~---~~l~~~~~dg~i~ 260 (612)
.. .....+.++++.. ++ ..|++|-.+|.|-
T Consensus 76 Ri----KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RI----KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee----ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44 2334466666554 32 2588888888764
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.47 E-value=0.029 Score=55.54 Aligned_cols=225 Identities=11% Similarity=0.125 Sum_probs=125.1
Q ss_pred CEEEEEEcC------CEEEEEEcCCCC-CCceeecCcccceeEEEEEecCCcEEEEEecC------CcEEEEEcCCceee
Q 007229 297 DHLITVSLG------GIISIFSASNLD-KAPLSFSGHVKNVSTLTALKISQQTILSSSYD------GAIIKWIRGVGYSS 363 (612)
Q Consensus 297 ~~~~~~~~~------~~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~ 363 (612)
..+++|+.. ..+..||..... .....+. ....-.+++..+ +.+.++|+.| ..+..||...++..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 344455544 456777766542 2222222 233344455555 7888899988 35778888888755
Q ss_pred eecee--cccceEEEEeeccEEEEecCCC-----eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEE
Q 007229 364 KLEKK--YDARIKCLAAVEEVIFTAGFDN-----KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436 (612)
Q Consensus 364 ~~~~~--~~~~i~~~~~~~~~l~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (612)
....- ...........+...++|+.|| .+..||..+.......
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va------------------------------ 412 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA------------------------------ 412 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC------------------------------
Confidence 53322 2222233334788888888887 4666666655432100
Q ss_pred EeecccceeeecccceEEEEEEccCCCeEEEEecCC------eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEE
Q 007229 437 LLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG------KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA 510 (612)
Q Consensus 437 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (612)
.... ..-..-...-+|++.++|+.++ ++..||..++.......+.......... .-++.+.+
T Consensus 413 ---------~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a--~~~~~iYv 480 (571)
T KOG4441|consen 413 ---------PMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA--VLNGKIYV 480 (571)
T ss_pred ---------CCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE--EECCEEEE
Confidence 0000 0111122233677788887554 6889999988875444444322222222 23778888
Q ss_pred EEcCCC-----eEEEEecCCcceeeec-ccccccceeEEEecCCCcEEEEeecCc-----EEEEEEccC
Q 007229 511 SADGNR-----EAIVWDRVSKEVKLNN-MLFHTARINCLAWSPSSTMVATGSIDT-----CVIIYEIGK 568 (612)
Q Consensus 511 ~~~~d~-----~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~ 568 (612)
.|+.|+ +|..||..+.+-.... .......+..... +++..++|+.|| +|..||..+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 888776 3777888877654222 2212222222222 567778888776 466676665
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.44 E-value=0.094 Score=48.21 Aligned_cols=226 Identities=13% Similarity=0.102 Sum_probs=107.4
Q ss_pred cCCCEEEEec--CCEEEEEeCC----CCceeeEecc---CC----CceEEEEECCCCCEEEEe--eC----cCeEEEeec
Q 007229 28 PKTDTILYCN--GRSVLIRYLD----KPLHVEFYGE---HG----YPVTVARYSPNGEWIASA--DV----SGSVRIWGT 88 (612)
Q Consensus 28 ~d~~~l~~~~--~~~i~i~~~~----~~~~~~~~~~---h~----~~v~~~~~s~d~~~las~--~~----d~~i~iwd~ 88 (612)
.+.++|+..+ .+.|+|.|+. .++..++++. +. ..-..+---|+|+.++|+ +. -|-+.+.|-
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 3677888887 7899999987 4455555543 11 122233445799888885 22 245778887
Q ss_pred CCCceeeeeeeec---CCCeEEEEECCCCCEEEEEeCCC-----------------CeeeEEEEEecCCceeeeeccCC-
Q 007229 89 HNGFVLKNEFKVL---SGRIDDLQWSPDGLRIVACGDGK-----------------GKSFVRAFMWDSGTTVGDFDGHS- 147 (612)
Q Consensus 89 ~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~-----------------~~~~i~i~~~~~~~~~~~~~~~~- 147 (612)
++.+ +....... ...-..+-|.|..+.+++..-.. -...+.+|+|.+.+.++++.--.
T Consensus 165 ~tf~-v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFE-VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 7765 33333322 22345677788777888765321 12368899999999999886443
Q ss_pred -ceEEEEEE--cCCCCEEEEEeecCCeEEEEeC-CCCeeee----ccc-----------------ccccceEEEEECCCC
Q 007229 148 -RRVLSCEF--KPTRPFRIATCGEDFLVNFYEG-PPFKFKL----SHR-----------------EHSNFVNCIRFSPDG 202 (612)
Q Consensus 148 -~~v~~~~~--~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~----~~~-----------------~~~~~v~~~~~s~~~ 202 (612)
.....+.| .|+..+-++.+-...+|..|-- ..++... .+. .-..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 34556666 4556655666655666655532 3322111 111 113457899999999
Q ss_pred CeEEEEEc-CCcEEEEecCCCCeeeee---ecc-------------CCccccEEEEEEecCCCEEEEEe
Q 007229 203 SKLISVSS-DRKGLIYDGKSGEKIGEF---SSE-------------DGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 203 ~~l~~~~~-dg~i~vwd~~~~~~~~~~---~~~-------------~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
++|...+. +|.++.||+.+....... ..- ..-.+....+..|-||+.|....
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99987765 899999999875433222 100 01123446778888888887654
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.00073 Score=54.94 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=72.4
Q ss_pred CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEE-EEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccc-c
Q 007229 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVI-QYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHT-A 538 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~ 538 (612)
-+..+++|+.+|.|++|........ ......-...|.++ .--.++.+..+++.||.||.|++...+.+ .....|. .
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~-~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~-g~~g~h~~~ 146 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAH-SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL-GYVGQHNFE 146 (238)
T ss_pred cCceEEeecccceEEEecCCccchH-HHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee-eeeccccCC
Confidence 3567999999999999987622111 11111112233332 22235568889999999999999998886 4455566 6
Q ss_pred ceeEEEecCCCcEEEEe--ecCcEEEEEEccC
Q 007229 539 RINCLAWSPSSTMVATG--SIDTCVIIYEIGK 568 (612)
Q Consensus 539 ~i~~~~~s~~~~~l~s~--~~d~~i~iwd~~~ 568 (612)
++..+..+..+++|+.+ |.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 67777777777788887 8888888888865
No 397
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.016 Score=58.59 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=68.7
Q ss_pred EEEEccCCCEEEEec-CCEEEEEeCCCCcee-eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee
Q 007229 23 LISGNPKTDTILYCN-GRSVLIRYLDKPLHV-EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~ 100 (612)
.++.--.+.++++++ .|.+...|..+.-.. ..=..-.++|++++|+.||++++.|-.+|.|.+||+..++ +.+.+..
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e 170 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITE 170 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeee
Confidence 333334556788887 578888777654221 1112236799999999999999999999999999999988 5556666
Q ss_pred cCCCeEE---EEECCCCCEEEEEeCCC
Q 007229 101 LSGRIDD---LQWSPDGLRIVACGDGK 124 (612)
Q Consensus 101 ~~~~i~~---~~~s~~~~~l~~~~~~~ 124 (612)
|..+.+. +.+..++..++++...+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCC
Confidence 6655444 44455555555554444
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.30 E-value=0.15 Score=47.59 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=55.9
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc-EEEEEEecC-----------------CC-EEE
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS-IYAVSWSPD-----------------GK-KVL 251 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~i~~~~~-----------------~~-~l~ 251 (612)
..+.++..+|++++.++...-|.|.++|+.++..++..+ +..+. +.-+..... .. +++
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK---GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK---GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc---cCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 457889999999988887777999999999988777663 22211 111111000 11 233
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
.+-..|.|.+|.+ ..+..+..+...
T Consensus 385 yaprRg~lEvW~~----~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 385 YAPRRGILEVWSM----RQGPRVAAFNVG 409 (415)
T ss_pred EeccCCeEEEEec----CCCCEEEEEEeC
Confidence 4556799999999 888888777654
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.30 E-value=0.073 Score=43.85 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=80.8
Q ss_pred ceEEEEEEccCCCeEEEEec---------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEE-EEcCCCeEEE
Q 007229 451 FTVTACAIAPDGSEAIVGGQ---------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA-SADGNREAIV 520 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~i 520 (612)
...+.-..+|+|++.+-... .|.++.|-... +. ......-+--+.++|+.+.+.+. +-+.+-+|.-
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v---~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QV---ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-Cc---eeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 34556678899998442222 23444444331 11 11222223346788988776554 4456677877
Q ss_pred Ee--cCCccee-----eeccc--c-cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 521 WD--RVSKEVK-----LNNML--F-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 521 wd--~~~~~~~-----~~~~~--~-~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
|| ..++... ...-. . ..-..-.++...+|++.+++-..++|...|..+ + +.+..++-....|++++|-
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-G-K~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-G-KILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC-C-cEEEEEEcCCCceEEEEec
Confidence 77 5555431 11100 0 111123345566788888888889999999999 7 7777777788999999998
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.28 E-value=0.051 Score=53.92 Aligned_cols=227 Identities=16% Similarity=0.157 Sum_probs=124.6
Q ss_pred CcEEEEEecCC------cEEEEEcCCceeeeecee-cccceEEEEe-eccEEEEecCC-C-----eEEEEecCCCCCCcc
Q 007229 340 QQTILSSSYDG------AIIKWIRGVGYSSKLEKK-YDARIKCLAA-VEEVIFTAGFD-N-----KVWRVPLCEGECGDA 405 (612)
Q Consensus 340 ~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~-~~~~i~~~~~-~~~~l~~~~~~-~-----~i~~~~~~~~~~~~~ 405 (612)
+.+++.|+.++ .+..+|..++.......- ....-.+++. .+...++|+.+ | .+..||........
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 55666777663 577888888755543332 2222334444 67778888888 3 56667666554321
Q ss_pred ceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC-----eEEEEEcc
Q 007229 406 EHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-----KLHIYSIS 480 (612)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~v~i~d~~ 480 (612)
...+........+ ..-+|.+.|+|+.|| ++..||..
T Consensus 364 -----------------------------------~a~M~~~R~~~~v----~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 364 -----------------------------------VAPMNTKRSDFGV----AVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred -----------------------------------cCCccCcccccee----EEECCEEEEEeccccccccccEEEecCC
Confidence 0011111011111 123677888899887 58889999
Q ss_pred CcccccceeeccccCceEEEEEcCCCcEEEEEcCCC------eEEEEecCCcceeeec-ccccccceeEEEecCCCcEEE
Q 007229 481 GNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR------EAIVWDRVSKEVKLNN-MLFHTARINCLAWSPSSTMVA 553 (612)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~ 553 (612)
+.+......+......... ..-+|+..++|+.++ ++..||..+.+-.... ...-..... ++. -++.+.+
T Consensus 405 ~~~W~~va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYv 480 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHGV--AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYV 480 (571)
T ss_pred CCcccccCCCCcceeeeEE--EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEE
Confidence 8887444333321122222 223788888888654 5678888776643111 110111111 222 2677888
Q ss_pred EeecCc-----EEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCe-----EEEEEecc
Q 007229 554 TGSIDT-----CVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDAC-----IRVWRLAT 611 (612)
Q Consensus 554 s~~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~-----i~~w~~~~ 611 (612)
.|+.|+ +|..||..+..+..+..+......+ .++-.++...+.|+.||. |..||.++
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~-g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV-GVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccc-cEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 888776 3788998884433333333333222 222236777888887764 55555443
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.014 Score=54.09 Aligned_cols=125 Identities=9% Similarity=0.081 Sum_probs=84.5
Q ss_pred cccceeeecccceEEEEEEccCCCe-------EEEEecCCeEEEEEccCcccccceeeccc----cCceEEEEEcCCCcE
Q 007229 440 SLKVMSKIDLGFTVTACAIAPDGSE-------AIVGGQNGKLHIYSISGNTLTEEMVLEKH----RGAITVIQYSPDVSM 508 (612)
Q Consensus 440 ~~~~~~~~~~~~~i~~~~~s~~~~~-------l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~ 508 (612)
.++.+.+......|+-+.+.|+.+. -++|-.|..|.-||.+-.....+...+.| .....|.+-..+| +
T Consensus 365 ~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~ 443 (644)
T KOG2395|consen 365 RGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y 443 (644)
T ss_pred cceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence 4555556555555777777776542 34567788899999863322112222222 2345566655555 8
Q ss_pred EEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 509 FASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
+|+|+.+|.||+||- .+..-...+++-..+|..+..+.||++|+..+ +..+.+-++.
T Consensus 444 IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 999999999999998 55444466888899999999999999887554 5567776653
No 402
>PHA02713 hypothetical protein; Provisional
Probab=97.25 E-value=0.046 Score=54.37 Aligned_cols=94 Identities=7% Similarity=0.018 Sum_probs=54.6
Q ss_pred eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC------CeEEEEecCC-ccee-eecccccccceeEEE
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN------REAIVWDRVS-KEVK-LNNMLFHTARINCLA 544 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~iwd~~~-~~~~-~~~~~~~~~~i~~~~ 544 (612)
.+..||..+++......+.... ...-+..-+++..+.|+.+ ..+..||..+ .+-. ...+.........+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 5888998888764333332221 1111223367777777754 2467899887 3321 122222222233333
Q ss_pred ecCCCcEEEEeecCc--EEEEEEccCCC
Q 007229 545 WSPSSTMVATGSIDT--CVIIYEIGKPA 570 (612)
Q Consensus 545 ~s~~~~~l~s~~~d~--~i~iwd~~~~~ 570 (612)
+ +|++.++|+.|+ .+..||..+..
T Consensus 511 ~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 H--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred E--CCEEEEEeeecceeehhhcCccccc
Confidence 3 788889999888 78888888843
No 403
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0094 Score=55.08 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=95.6
Q ss_pred CCCEEE-EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC--------EEEEEeCCCCeeeEEEEEecC---C
Q 007229 70 NGEWIA-SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL--------RIVACGDGKGKSFVRAFMWDS---G 137 (612)
Q Consensus 70 d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~~~~~~~i~i~~~~~---~ 137 (612)
+.++|. ++.....++--|++.|+ +......+.. |.-+.+.|+.+ .|+-.++.+ |+.|+. +
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~------vfriDpRv~~ 415 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNS------VFRIDPRVQG 415 (644)
T ss_pred ccceEeeCCCCcCcceeeecccce-eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCc------eEEecccccC
Confidence 334444 45555678888999998 6666766665 88888888753 344444443 777772 3
Q ss_pred c-eeeeeccCC----ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC
Q 007229 138 T-TVGDFDGHS----RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR 212 (612)
Q Consensus 138 ~-~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 212 (612)
+ .+..-++|+ ....|.+-..+| .++.|+.+|.||+||--..+....+++...+|..+..+.||++++..+ +.
T Consensus 416 ~~kl~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~t 492 (644)
T KOG2395|consen 416 KNKLAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KT 492 (644)
T ss_pred cceeeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-cc
Confidence 3 333334443 345666666777 499999999999999744444445888899999999999999988655 56
Q ss_pred cEEEEec
Q 007229 213 KGLIYDG 219 (612)
Q Consensus 213 ~i~vwd~ 219 (612)
.+.+.++
T Consensus 493 yLlLi~t 499 (644)
T KOG2395|consen 493 YLLLIDT 499 (644)
T ss_pred EEEEEEE
Confidence 7777664
No 404
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.0027 Score=37.71 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=29.3
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEcc
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSIS 480 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~ 480 (612)
....|.+++|+|...++|.++.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45679999999999999999999999999984
No 405
>PRK10115 protease 2; Provisional
Probab=97.01 E-value=0.52 Score=48.38 Aligned_cols=114 Identities=9% Similarity=-0.009 Sum_probs=69.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEE--ecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-----CeEEEEe
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFM--WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-----FLVNFYE 176 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~wd 176 (612)
.+..+.+||||++|+.+.+..+.....++. ..+++.+........ ..++|.+|++.++++...+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 466788999999999887766554544444 445653322222222 4599999998655554432 4678888
Q ss_pred CCCC--eeeecccccccceE-EEEECCCCCeEEEEEc---CCcEEEEec
Q 007229 177 GPPF--KFKLSHREHSNFVN-CIRFSPDGSKLISVSS---DRKGLIYDG 219 (612)
Q Consensus 177 ~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---dg~i~vwd~ 219 (612)
+.++ +-...+.+...... ....+.++++++..+. ++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8877 33333333333233 3344558887765544 457888884
No 406
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.01 E-value=0.0032 Score=37.42 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=30.5
Q ss_pred ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 190 SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 190 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
...|.+++|+|...+||.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999998 55543
No 407
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.2 Score=43.09 Aligned_cols=278 Identities=13% Similarity=0.030 Sum_probs=154.3
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
...-+..+.++ +++...+..+.-+++.|+..+ .+..++..+.. .....+...+++...++..+.-+.+.|+
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P-~sP~~~~~lnt------~gyaygv~vsGn~aYVadlddgfLivdv 155 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTP-DSPTLIGFLNT------DGYAYGVYVSGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCC-CCcceeccccC------CceEEEEEecCCEEEEeeccCcEEEEEC
Confidence 44556677776 556777777888999999332 22222222222 1345666677899999998888999998
Q ss_pred CCCCCCceeec--CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCC
Q 007229 314 SNLDKAPLSFS--GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFD 389 (612)
Q Consensus 314 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~ 389 (612)
..+..+...-+ .....-..++.+ +++...+..|+-+.+-|+.......+... ....+..+...+++.+..-.+
T Consensus 156 sdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 156 SDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred CCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 88877655433 222333455555 78888888999999999998777666554 222566666666665555555
Q ss_pred CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec--ccceEEEEEEccCCCeEEE
Q 007229 390 NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID--LGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~ 467 (612)
.-+.+.|..+.... ...-..+ ....++.+.. .+++..+
T Consensus 233 egvlivd~s~~ssp--------------------------------------~~~gsyet~~p~~~s~v~V--s~~~~Yv 272 (370)
T COG5276 233 EGVLIVDVSGPSSP--------------------------------------TVFGSYETSNPVSISTVPV--SGEYAYV 272 (370)
T ss_pred cceEEEecCCCCCc--------------------------------------eEeeccccCCcccccceec--ccceeee
Confidence 55555555443311 0000011 1112222333 3455555
Q ss_pred EecCCeEEEEEccCccccc-ceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEec
Q 007229 468 GGQNGKLHIYSISGNTLTE-EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546 (612)
Q Consensus 468 ~~~dg~v~i~d~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 546 (612)
...+.-+.+-|+.+..-.. ...+......-..+..+ +.++..+..+ +..+-+....+..-+ ..+....+.+.+.+
T Consensus 273 adga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~-~~g~~ti~~s~~v~ 348 (370)
T COG5276 273 ADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDK-RPGRPTIGQSCDVS 348 (370)
T ss_pred eccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhccc-ccCcceEeeecceE
Confidence 5555556666665432110 11111111122333332 3355555444 445555554443311 22223334455555
Q ss_pred CCCcEEEEeecCcEEEEEEcc
Q 007229 547 PSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 547 ~~~~~l~s~~~d~~i~iwd~~ 567 (612)
-+.+.+.+...++.+.||+..
T Consensus 349 ~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 349 VDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred EEeeEEEEeecCCCEEEEEec
Confidence 566677888888889998863
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.89 E-value=0.43 Score=45.58 Aligned_cols=177 Identities=14% Similarity=0.207 Sum_probs=101.3
Q ss_pred cceEEEEECCCCCeEEEEE---cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC----CCEEEEEeCCCcEEEEE
Q 007229 191 NFVNCIRFSPDGSKLISVS---SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD----GKKVLTVSADKSAKVWE 263 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~~~dg~i~iw~ 263 (612)
.++..++|. ||+.++-.. .+|.+++=| ...+ +.-..|..++|.|- ...+++......|.+|.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi-------GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI-------GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe-------eccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 578899997 666554332 234433322 2233 33355889999984 33455556778999999
Q ss_pred eecCC-CCCeeEeeeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCC
Q 007229 264 ILEDG-SGGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ 340 (612)
Q Consensus 264 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (612)
+.... +..+.+............-...+|.|. ...+.+-+....-.+++.......+..--...+-|.+.+|...+.
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 84221 233444443333334444556678887 344555555555556666655555554445677889999995434
Q ss_pred cEEEEEecCCcEEEEEcCCceeeee----ceecccceEEEEe
Q 007229 341 QTILSSSYDGAIIKWIRGVGYSSKL----EKKYDARIKCLAA 378 (612)
Q Consensus 341 ~~l~~~~~dg~i~~wd~~~~~~~~~----~~~~~~~i~~~~~ 378 (612)
+++++.+..=.-++||-........ ...-.+.|.++..
T Consensus 169 RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A 210 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA 210 (671)
T ss_pred EEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence 4444555555678888654432221 1114556666666
No 409
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.89 E-value=0.15 Score=42.01 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=86.4
Q ss_pred EEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee---eEEEE-EecCC
Q 007229 63 TVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS---FVRAF-MWDSG 137 (612)
Q Consensus 63 ~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~---~i~i~-~~~~~ 137 (612)
.+++-++.+ .|..+...+.|.+|++...+. +...+..- +.|..+.++..|+||++.-.+.... ++++| +|...
T Consensus 21 ~~~c~~g~d-~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 21 TAVCCGGPD-ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceeeccCCc-eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 344444423 333334567899999994333 44455544 7899999999999999998877766 77776 57622
Q ss_pred ----ceee-eeccC---------------------CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee-ee-----c
Q 007229 138 ----TTVG-DFDGH---------------------SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF-KL-----S 185 (612)
Q Consensus 138 ----~~~~-~~~~~---------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~-----~ 185 (612)
.++. .+-|| ..++.+++-.|-... |+.|+. +.+.+|.+..... .. .
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~~-~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGCG-NKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEcC-CEEEEEEEEEEEEecccccEEe
Confidence 2222 22221 234556666665443 555543 4688887654333 11 0
Q ss_pred cc----cc-c-cceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 186 HR----EH-S-NFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 186 ~~----~~-~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
+. .| . -.+..+++. +.|+|..+ +-.+++..+
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred chhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 10 11 1 124555555 56777655 456777654
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.77 E-value=0.78 Score=46.81 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.2
Q ss_pred CeEEEEECCCCCEEEEEeCCC
Q 007229 104 RIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~ 124 (612)
.|..+.++|+|++|+..|..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~ 106 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG 106 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc
Confidence 688999999999999999877
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.76 E-value=0.5 Score=44.44 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=82.3
Q ss_pred CceeEEEEccCCCEEEEec-------------CCEEEEEeCCC--Cce--eeEeccCCCceEEEEECCCCCEEEEeeCcC
Q 007229 19 GRGILISGNPKTDTILYCN-------------GRSVLIRYLDK--PLH--VEFYGEHGYPVTVARYSPNGEWIASADVSG 81 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-------------~~~i~i~~~~~--~~~--~~~~~~h~~~v~~~~~s~d~~~las~~~d~ 81 (612)
....+|+|.++|+++++-. ++.|.+++-.+ |+. ...+...-.....+++.++| ++++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence 4677999999999887742 23777776542 332 23344344466889999999 5554 3443
Q ss_pred eEEEeecCCC-----c--eeeeeeee----cCCCeEEEEECCCCCEEEEEeCCCCee--------------eEEEEEec-
Q 007229 82 SVRIWGTHNG-----F--VLKNEFKV----LSGRIDDLQWSPDGLRIVACGDGKGKS--------------FVRAFMWD- 135 (612)
Q Consensus 82 ~i~iwd~~~~-----~--~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~~~~--------------~i~i~~~~- 135 (612)
..++.|.... + .+...+.. +......++|.|||...++.+...... .-.++.++
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 1 12222222 134577899999998877766421100 01345544
Q ss_pred CCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 136 SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
.+..+..+.........++|+|+|+ ++++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence 2223333333334567899999998 455543
No 412
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=96.74 E-value=0.94 Score=47.34 Aligned_cols=143 Identities=18% Similarity=0.283 Sum_probs=86.0
Q ss_pred CeEEEEec---------CCeEEEEEccC-----cccc-----cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 463 SEAIVGGQ---------NGKLHIYSISG-----NTLT-----EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 463 ~~l~~~~~---------dg~v~i~d~~~-----~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
.||++|.. -|.++|||+-. +++. .....+.-+++|..++= -+|. |+++.. ..|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~-l~~~~G-qKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGH-LLSSQG-QKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccE-EEEccC-cEEEEEEe
Confidence 57888752 47899999742 2221 11122345677877653 3554 444433 57999999
Q ss_pred CC-cceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccc--ccCeeeEEEe-cCce--EEE
Q 007229 524 VS-KEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH--LGGVYGVAFM-DDFN--VVS 597 (612)
Q Consensus 524 ~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~~-~~~~--l~s 597 (612)
+. ...+-..+ -.-++.-....-=+++|+.|.--+.|.+.-.+... ..+..+... .-.+.++.|. ++.. ++.
T Consensus 1124 ~r~~~ligVaF--iD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep-~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1124 DRDSELIGVAF--IDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEP-YRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred ccCCcceeeEE--eccceeEEehhhhhhheehhhhhhceEEEEEccCc-eEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 44 44332222 12233333333345678888877788888887733 444443322 2268899998 6654 788
Q ss_pred ccCCCeEEEEEecc
Q 007229 598 SGEDACIRVWRLAT 611 (612)
Q Consensus 598 ~~~d~~i~~w~~~~ 611 (612)
+..|+.|++|-..+
T Consensus 1201 sDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1201 SDADRNIHVYMYAP 1214 (1366)
T ss_pred EcCCCcEEEEEeCC
Confidence 89999999987654
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.67 E-value=0.45 Score=42.59 Aligned_cols=278 Identities=11% Similarity=0.080 Sum_probs=116.5
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
+...++..|.|..+..-++++ ..+. ++...+.+.+-+... .............+.+.++...+.+..+.+ +.
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG-~~g~--il~T~DGG~tW~~~~---~~~~~~~~~~l~~I~f~~~~g~ivG~~g~l--l~ 85 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVG-AYGT--ILKTTDGGKTWQPVS---LDLDNPFDYHLNSISFDGNEGWIVGEPGLL--LH 85 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEE-TTTE--EEEESSTTSS-EE--------S-----EEEEEEEETTEEEEEEETTEE--EE
T ss_pred CCCCceEEEEEecCCEEEEEe-cCCE--EEEECCCCccccccc---cCCCccceeeEEEEEecCCceEEEcCCceE--EE
Confidence 456689999999555555555 4554 445433333333322 111111122344455555555556666643 33
Q ss_pred cCCCCCCceeec---CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEec
Q 007229 313 ASNLDKAPLSFS---GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAG 387 (612)
Q Consensus 313 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~ 387 (612)
..........+. .-......+.... .......+..|.|..=.-....-..........+..+.. ++.+++++.
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~--~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALG--DGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEE--TTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcC--CCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence 233333333321 1122333344433 334444444555443322222222222223344555444 344444443
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 467 (612)
.-..+.-|+.-...- ..........|.+|.|+|++.+.++
T Consensus 164 ~G~~~~s~~~G~~~w----------------------------------------~~~~r~~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 164 RGNFYSSWDPGQTTW----------------------------------------QPHNRNSSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp TSSEEEEE-TT-SS-----------------------------------------EEEE--SSS-EEEEEE-TTS-EEEE
T ss_pred cccEEEEecCCCccc----------------------------------------eEEccCccceehhceecCCCCEEEE
Confidence 333334444322110 0111113457999999999887665
Q ss_pred EecCCeEEEEEcc-Cc-cccc-ceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc--cccccceeE
Q 007229 468 GGQNGKLHIYSIS-GN-TLTE-EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM--LFHTARINC 542 (612)
Q Consensus 468 ~~~dg~v~i~d~~-~~-~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~ 542 (612)
+ ..|.|++=+.. .. .... ........-.+..++|.+++...|+|+. |.+ +.....++.-.+.. ..-....+.
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~ 280 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYR 280 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---E
T ss_pred e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEE
Confidence 4 88888888722 11 1110 1111122234789999999888887765 433 34455555432221 123456788
Q ss_pred EEecCCCcEEEEeecCcEEEEE
Q 007229 543 LAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 543 ~~~s~~~~~l~s~~~d~~i~iw 564 (612)
+.|.++.+-++.| .+|.+.-|
T Consensus 281 i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEEETTEEEEE--STTEEEEE
T ss_pred EEEcCCCceEEEC-CCcEEEEe
Confidence 8888665555554 67766544
No 414
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.11 Score=47.58 Aligned_cols=154 Identities=10% Similarity=0.081 Sum_probs=102.6
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCC---ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce---e
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKP---LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV---L 94 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~---~ 94 (612)
-+.+=|....+.|++...|.+.=|-++.+ -++..-...+++|.++.||+|.+.||.--.+.+|.+.+....+. .
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34566776677776666555555554432 22333334677999999999999999999999999999854443 2
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEee-cCCeE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-EDFLV 172 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i 172 (612)
....+.....|....|+.+ .-+|...+.+ +.++... ..+.++..+.|...|.-..|.++.+..+.+.+ ..+++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G----~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG----IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC----eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 2222334456889999876 6777777766 4566666 45566777888999999999999885444444 33444
Q ss_pred EEEeCCC
Q 007229 173 NFYEGPP 179 (612)
Q Consensus 173 ~~wd~~~ 179 (612)
.=+.+++
T Consensus 180 npf~~~~ 186 (657)
T KOG2377|consen 180 NPFHFRA 186 (657)
T ss_pred ccEEEee
Confidence 3343333
No 415
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.59 E-value=0.66 Score=43.63 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=83.3
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce----
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV---- 528 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---- 528 (612)
...+..++|+.+++++.....++-||-...... ..-......++++.+.+++..++++ .+|.+. +....++.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~--~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQ--PHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceE--EecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 344567788887777655433333443221111 1112234568999999999888766 456544 33333321
Q ss_pred eeeccc--ccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec---ccccCeeeEEEecCceEEEccCCCe
Q 007229 529 KLNNML--FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN---AHLGGVYGVAFMDDFNVVSSGEDAC 603 (612)
Q Consensus 529 ~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~s~~~d~~ 603 (612)
...... .....+.++.|.+++..+++| .+|.+.... .. + +...... .-......+.|.+++.....+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~-G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DG-G-KSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CC-C-cceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence 011111 112358899999888766555 677555553 22 3 3333322 2345688999886666666778888
Q ss_pred EEEE
Q 007229 604 IRVW 607 (612)
Q Consensus 604 i~~w 607 (612)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7665
No 416
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.18 Score=49.35 Aligned_cols=217 Identities=12% Similarity=0.108 Sum_probs=111.3
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee--e
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN--E 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~--~ 97 (612)
.+-++..+|....=++..--.|.|+++.. +.+..+.-....+..+.|+.+..+|+.. .+|++.||++........ -
T Consensus 45 GpIAV~r~p~~~~~~~~a~~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~eeLI~v~-k~g~v~Vy~~~ge~ie~~svg 122 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLYSARPYIRIFNISG-QLLGRILWKHGELIGMGWSDDEELICVQ-KDGTVHVYGLLGEFIESNSVG 122 (829)
T ss_pred CceEEEecccccccccccceeEEEEeccc-cchHHHHhcCCCeeeecccCCceEEEEe-ccceEEEeecchhhhcccccc
Confidence 33444444433222222234688888764 4444444344488899999988766554 899999999976542110 1
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCc-eeeee---ccCCceEEEEEEcCCCCEEEEEeecCCe-
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGT-TVGDF---DGHSRRVLSCEFKPTRPFRIATCGEDFL- 171 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~-~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~- 171 (612)
.......|..+.|..+|-.+++.+.. +...+ .++ .++++ ++..-+-.|-...+++......-..+-.
T Consensus 123 ~e~~~~~I~ec~~f~~GVavlt~~g~-------v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v 195 (829)
T KOG2280|consen 123 FESQMSDIVECRFFHNGVAVLTVSGQ-------VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAV 195 (829)
T ss_pred cccccCceeEEEEecCceEEEecCCc-------EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhh
Confidence 12233356666666666444444332 33333 111 22222 2222222233222222100100011100
Q ss_pred -EEEEeCCCCe-eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 172 -VNFYEGPPFK-FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 172 -i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
..+....... ....+......+..+..||+.++|+--...|.|.+-+.+..+....+... ...+...++|..+.
T Consensus 196 ~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~--~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 196 GLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT--DHDPPKQMAWCGND 271 (829)
T ss_pred hhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC--CCCchHhceeecCC
Confidence 0111111111 11112222356888999999999999999999999998888877777422 22333366776444
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.054 Score=55.37 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc-----eeeee------ccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT-----TVGDF------DGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 103 ~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~-----~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
-.+..+...+|++..++....++. .+..+++.+-. ...-| ........++.|+|.=....+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~-~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGE-AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCc-eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 356677778888776666554422 45555544211 11111 2233456778899877666888899999
Q ss_pred EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC-CccccEEEEEEecCCCEE
Q 007229 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED-GHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l 250 (612)
|++..+........--.-....++++|+|.|+.++.|-..|++.-|... ++....+..+. .....|.+++|.....++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9998765443332222345678999999999999999999999999853 44444443221 224789999999877776
Q ss_pred EEE
Q 007229 251 LTV 253 (612)
Q Consensus 251 ~~~ 253 (612)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
No 418
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.49 E-value=0.28 Score=48.00 Aligned_cols=77 Identities=17% Similarity=0.336 Sum_probs=52.9
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
..++++.-+|.++.++.+..||.|++|+.......... ....|-..+.|...| |++...|..+.-|.- .
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~----~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~-----d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC----EEAKPKENLVFTNHG--LVTATSDRRALAWKE-----D 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh----hhcCCccceeeeccc--eEEEeccchhheeec-----c
Confidence 45777888899999999999999999998655442222 223344566776555 677777888888873 5
Q ss_pred CeeEeeee
Q 007229 271 GRVIKTFA 278 (612)
Q Consensus 271 ~~~~~~~~ 278 (612)
+-..+.|.
T Consensus 84 gvvqqqfd 91 (1636)
T KOG3616|consen 84 GVVQQQFD 91 (1636)
T ss_pred Ccchhhcc
Confidence 54444444
No 419
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.46 E-value=0.81 Score=43.07 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=94.2
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCCCeEEEEecCCCC----------------
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE---------------- 401 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~---------------- 401 (612)
..++..-+.||.+.+++-+.-........ ..+++ +.....+.+++++.+..+..|....-.
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl-~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~ 223 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPL-CYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI 223 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCe-EEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence 46777778888888887766554333332 22222 222356677777777777766542111
Q ss_pred -----CCccceeccCCCcceeeecCC--CCcEEEEEeeccEEEee-cccceeeecccceEEEEE-Ec----cCC---CeE
Q 007229 402 -----CGDAEHIDVGSQPLDLSLALS--SPELALVSTESGVILLD-SLKVMSKIDLGFTVTACA-IA----PDG---SEA 465 (612)
Q Consensus 402 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~-~s----~~~---~~l 465 (612)
....-.......+..+..... ....+++-+...+..++ .+.............|++ |. .++ ..+
T Consensus 224 ~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~l 303 (418)
T PF14727_consen 224 SSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNL 303 (418)
T ss_pred cccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEE
Confidence 111112233333333332221 22333444444444444 444433334444444443 11 122 248
Q ss_pred EEEecCCeEEEEEccCcccccceeeccccCce--EEEEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 466 IVGGQNGKLHIYSISGNTLTEEMVLEKHRGAI--TVIQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 466 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
++++.++.+.||.=.+-.. ...+ ...+| .-..|..-...|++-+.+|.+.+-=+-+...
T Consensus 304 lV~t~t~~LlVy~d~~L~W--sA~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 304 LVGTHTGTLLVYEDTTLVW--SAQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEecCCeEEEEeCCeEEE--ecCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 8899999999997554333 2222 11222 2223333456888888999998876655443
No 420
>PHA03098 kelch-like protein; Provisional
Probab=96.45 E-value=0.29 Score=49.11 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=75.6
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC------CeEEEEecCCccee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN------REAIVWDRVSKEVK 529 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~iwd~~~~~~~ 529 (612)
+++..+.|+.+ ..+..||..+++......+........ + ..-+++..+.|+.+ ..+..||..+.+-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~-~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPC-V-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccce-E-EEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56677777755 357888888776643333322111111 1 22367777777732 45888998775432
Q ss_pred eec-ccccccceeEEEecCCCcEEEEeecC--------cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccC
Q 007229 530 LNN-MLFHTARINCLAWSPSSTMVATGSID--------TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE 600 (612)
Q Consensus 530 ~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~ 600 (612)
... ...... ...+...++++.+.|+.+ ..+.+||..+..+..+..+....... +++..+++.++.||.
T Consensus 420 ~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 420 KGSPLPISHY--GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCIFNNKIYVVGGD 496 (534)
T ss_pred ecCCCCcccc--CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEEECCEEEEEcCC
Confidence 111 110011 111222366777777643 23888888874323332222111111 122226777777775
Q ss_pred C-----CeEEEEEecc
Q 007229 601 D-----ACIRVWRLAT 611 (612)
Q Consensus 601 d-----~~i~~w~~~~ 611 (612)
+ +.+.+||.++
T Consensus 497 ~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 497 KYEYYINEIEVYDDKT 512 (534)
T ss_pred cCCcccceeEEEeCCC
Confidence 4 4688888765
No 421
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.43 E-value=0.53 Score=40.61 Aligned_cols=115 Identities=9% Similarity=0.001 Sum_probs=75.3
Q ss_pred cccEEEEEEecCCCEEEEEeCCC--cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 235 HGSIYAVSWSPDGKKVLTVSADK--SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
..-...+.|..++.++-+.+.-| .|+.+|+ .+++.......+..-
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~----~tg~~~~~~~l~~~~----------------------------- 90 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDL----ETGKVLQSVPLPPRY----------------------------- 90 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEET----TTSSEEEEEE-TTT------------------------------
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEEC----CCCcEEEEEECCccc-----------------------------
Confidence 34456788878888888888766 7888898 888877766554310
Q ss_pred cCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 313 ASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
--..+...+ +....-.-.++...+||..+-+...... ....=..++.+++.|+.......+
T Consensus 91 ----------------FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L 151 (264)
T PF05096_consen 91 ----------------FGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRL 151 (264)
T ss_dssp -----------------EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEE
T ss_pred ----------------cceeEEEEC--CEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEEcCCCEEEEECCccce
Confidence 001122222 3444455567888999998877776655 567778888999999999989999
Q ss_pred EEEecCCCC
Q 007229 393 WRVPLCEGE 401 (612)
Q Consensus 393 ~~~~~~~~~ 401 (612)
+.+|..+..
T Consensus 152 ~~~dP~~f~ 160 (264)
T PF05096_consen 152 YFLDPETFK 160 (264)
T ss_dssp EEE-TTT-S
T ss_pred EEECCcccc
Confidence 999977654
No 422
>PHA03098 kelch-like protein; Provisional
Probab=96.40 E-value=0.5 Score=47.38 Aligned_cols=104 Identities=10% Similarity=0.122 Sum_probs=56.6
Q ss_pred CCCeEEEEecC------CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC--------CeEEEEecCCc
Q 007229 461 DGSEAIVGGQN------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN--------REAIVWDRVSK 526 (612)
Q Consensus 461 ~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------~~i~iwd~~~~ 526 (612)
+++..+.|+.+ ..+..||..+++......++....... +...+++..+.|+.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC--AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce--EEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 55666666632 368899998877643332222111111 223366777777643 23888998876
Q ss_pred ceeeec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccC
Q 007229 527 EVKLNN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGK 568 (612)
Q Consensus 527 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~ 568 (612)
+-.... ..........+.+ ++++++.|+.+ ..+.+||..+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 532111 1111111122222 67777788754 4688899887
No 423
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.37 E-value=0.58 Score=40.40 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=102.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 182 (612)
-...+.|..+|..+-+.|..+ .+.++.++.++++......-. .-.-..++...+. +...-=.++...+||..+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~--l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK--LYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE--EEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEECCE--EEEEEecCCeEEEEccccceE
Confidence 456788888888888877766 447888888898876654322 2223344444442 455555678999999999998
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC--CccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED--GHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
+.++.- .+.=..++ .|++.|+.......++++|.++.+....+.... ..-..+..+.|. +|...|=.-....|.
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 887643 34445565 567777777777889999999888877775431 112244556665 565555444556677
Q ss_pred EEEeecCCCCCeeEeeeecc
Q 007229 261 VWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 261 iw~~~~~~~~~~~~~~~~~~ 280 (612)
..|. .+++....+...
T Consensus 199 ~Idp----~tG~V~~~iDls 214 (264)
T PF05096_consen 199 RIDP----ETGKVVGWIDLS 214 (264)
T ss_dssp EEET----TT-BEEEEEE-H
T ss_pred EEeC----CCCeEEEEEEhh
Confidence 7777 788877766543
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.079 Score=54.26 Aligned_cols=144 Identities=12% Similarity=0.081 Sum_probs=93.8
Q ss_pred cceEEEEEEccCCCeEEEEecCC--eEEEEEccCccccc---ceeeccc------cCceEEEEEcCCCc-EEEEEcCCCe
Q 007229 450 GFTVTACAIAPDGSEAIVGGQNG--KLHIYSISGNTLTE---EMVLEKH------RGAITVIQYSPDVS-MFASADGNRE 517 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~~~~~dg--~v~i~d~~~~~~~~---~~~~~~~------~~~i~~~~~s~~~~-~l~~~~~d~~ 517 (612)
..++..+...+|+...++....+ .|+.||+..-.... ...+..| .....++.|.|.-. ..|....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34567778888877766554433 79999987543211 1222222 23456778888432 3456667889
Q ss_pred EEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc----cccCeeeEEEe-cC
Q 007229 518 AIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA----HLGGVYGVAFM-DD 592 (612)
Q Consensus 518 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----h~~~v~~~~~~-~~ 592 (612)
|++..+.-.......+. -....++++|+|.|+.++.|-..|++.-|...- +....+.+ ....|.+|+|. ..
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l---eik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL---EIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc---ceeecccCCCcCCCcceeEEEEecce
Confidence 99887765544433333 456789999999999999999999999887654 22222111 14679999999 66
Q ss_pred ceEEE
Q 007229 593 FNVVS 597 (612)
Q Consensus 593 ~~l~s 597 (612)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 66665
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=1.1 Score=41.50 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=85.4
Q ss_pred EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeE
Q 007229 195 CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVI 274 (612)
Q Consensus 195 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 274 (612)
.+-|. |.+..+.+...|.+.=|-......-..++......++|.++.|++|.+.+++--.+.+|.+++.. ..+..
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~----~d~~~ 101 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI----PDNSQ 101 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC----CCchh
Confidence 34444 33334444455666666654332211111122456799999999999999999999999999972 22222
Q ss_pred eeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe
Q 007229 275 KTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337 (612)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 337 (612)
... ..........+.+..|..+.-++--.+..+.+|........++....|...|.-..|..
T Consensus 102 l~~-~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~ 163 (657)
T KOG2377|consen 102 LEY-TQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCP 163 (657)
T ss_pred hHH-HHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEcc
Confidence 111 11222233457888888666555555666777777777777777777888887777774
No 426
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.17 E-value=1.3 Score=42.55 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=77.7
Q ss_pred CceeEEEEccC----C-CEEEEecCCEEEEEeCC-----CCceeeEec-cCCC----ceEEEEECCCCCEEEEeeCcCeE
Q 007229 19 GRGILISGNPK----T-DTILYCNGRSVLIRYLD-----KPLHVEFYG-EHGY----PVTVARYSPNGEWIASADVSGSV 83 (612)
Q Consensus 19 ~~v~~~~~s~d----~-~~l~~~~~~~i~i~~~~-----~~~~~~~~~-~h~~----~v~~~~~s~d~~~las~~~d~~i 83 (612)
+.|..++|.|- - .+||+-....|.||-+. +.+.+..-. ...+ --..+.|+|....|+.-.....=
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 47899999995 3 57788889999999875 222221111 0111 12467899999888876655444
Q ss_pred EEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc
Q 007229 84 RIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT 138 (612)
Q Consensus 84 ~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~ 138 (612)
.+.++..... ++..+ ...+.|.|.+|.+||++|+++-... +.-|.||+.+
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSs----LHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSS----LHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCe----EEEEEecCch
Confidence 5666664433 33333 5677899999999999998887664 7789999543
No 427
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.06 E-value=1.3 Score=41.70 Aligned_cols=274 Identities=14% Similarity=0.097 Sum_probs=138.7
Q ss_pred CCEEEEeeCcCeEEEeecCCCcee---eeeeeecCCCeEEEEECC-----CCCEEEEEeCCCCeeeEEEEEec--CCc--
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSP-----DGLRIVACGDGKGKSFVRAFMWD--SGT-- 138 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~~~~~~~i~i~~~~--~~~-- 138 (612)
...|++||..|.++|++....... ...-..-+.+|..+..-. +...||+..-.. +.++... .|.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~k----l~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRK----LSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCE----EEEEEEEecCCCcc
Confidence 358999999999999999765421 111123446787776542 334555544332 4555553 121
Q ss_pred -----eeeeeccCC--ceEEEEEEcC----CCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE
Q 007229 139 -----TVGDFDGHS--RRVLSCEFKP----TRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 139 -----~~~~~~~~~--~~v~~~~~~~----~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
.+..+..|. .....++.-| .++..+..-+.||.+.+++-+.......+.+ ---.-.+.|.+....+++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 222222232 1222222222 2244799999999999999887665555544 222334678888888898
Q ss_pred EEcCCcEEEEecCCCCee-----------------eeeec--cCCccccEEEEE---EecCCCEEEEEeCCCcEEEEEee
Q 007229 208 VSSDRKGLIYDGKSGEKI-----------------GEFSS--EDGHHGSIYAVS---WSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~-----------------~~~~~--~~~~~~~v~~i~---~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
++.+..+.-|....-... ..+.. .-.-..++..+. ++.....+++-++ .++.+.+.
T Consensus 192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~- 269 (418)
T PF14727_consen 192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKD- 269 (418)
T ss_pred ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcC-
Confidence 888888888865311000 00000 001123333333 3223334444433 34555553
Q ss_pred cCCCCCeeEeeeeccCccccceeeeee--eccC---CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE--ec
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGC--LWQN---DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL--KI 338 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 338 (612)
+|......+..- .+..-..+.. ...+ ..+++++.++.+.+|.-..- .--........++... ..
T Consensus 270 ----~G~l~~~krLd~-~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L----~WsA~l~~~PVal~v~~~~~ 340 (418)
T PF14727_consen 270 ----NGSLRFQKRLDY-NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL----VWSAQLPHVPVALSVANFNG 340 (418)
T ss_pred ----CCeEEEEEecCC-ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE----EEecCCCCCCEEEEecccCC
Confidence 454444433321 1111111222 1111 24999999999999872221 1000111111223222 22
Q ss_pred CCcEEEEEecCCcEEEEEcCCc
Q 007229 339 SQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
-...+++-+.+|.+.+-=+.+.
T Consensus 341 ~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CCceEEEEcCCCcEEEEEeCCC
Confidence 3567777777777776654443
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.05 E-value=0.38 Score=45.28 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=76.7
Q ss_pred eEEEEEEccCCCeEEEEe-----------cCC-eEEEEEccC--cccccceeeccccCceEEEEEcCCCcEEEEEcCCCe
Q 007229 452 TVTACAIAPDGSEAIVGG-----------QNG-KLHIYSISG--NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNRE 517 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~-----------~dg-~v~i~d~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 517 (612)
....++|.++|+++++-. ..+ .|.+++-.+ ++......+...-.....+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 467889999998777642 223 677776532 3332223333333456889999998 444 444433
Q ss_pred EEEEecCC-------cceeeecccc----cccceeEEEecCCCcEEEEeecC-------------------cEEEEEEcc
Q 007229 518 AIVWDRVS-------KEVKLNNMLF----HTARINCLAWSPSSTMVATGSID-------------------TCVIIYEIG 567 (612)
Q Consensus 518 i~iwd~~~-------~~~~~~~~~~----~~~~i~~~~~s~~~~~l~s~~~d-------------------~~i~iwd~~ 567 (612)
.++.|... .+.+...+.. +......++|.|||.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 33445432 1222222322 13447789999999876654421 334444444
Q ss_pred CCCcceeeeecccccCeeeEEEe-cCceEEEc
Q 007229 568 KPASSRITIKNAHLGGVYGVAFM-DDFNVVSS 598 (612)
Q Consensus 568 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~ 598 (612)
. ..+..+..--.....++|+ +++.+++-
T Consensus 173 g---~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 173 G---GKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred C---CeEEEEecCcCCCccceECCCCCEEEEc
Confidence 3 2233332222335678898 66665553
No 429
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.95 E-value=0.73 Score=45.32 Aligned_cols=112 Identities=14% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
....++++.-+|.++. ++.+..||+|++|+..+.+..... ....+-..+.|...| |++++.|+.+.-|. ++|...
T Consensus 13 ~~e~~~aiqshp~~~s-~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq 87 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQS-FVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ 87 (1636)
T ss_pred ccceeeeeeecCCCce-EEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc--eEEEeccchhheee-ccCcch
Confidence 4566788888999994 999999999999997766543222 122344556676555 67777888888887 566555
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
+.+...........++...|..+.++ |.--|.+.-+|
T Consensus 88 qqfdyndqsekefss~~cdptaqnvv-gtlcggv~q~d 124 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQNVV-GTLCGGVEQFD 124 (1636)
T ss_pred hhccccchhhhhccceecCchhhhhh-hhhccceeeeh
Confidence 55533333444556666666544332 22234454444
No 430
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.83 E-value=1.5 Score=40.43 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=52.7
Q ss_pred ceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc---ccceeec--cccCceEEEEEcC--CC--cEEEEEc
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL---TEEMVLE--KHRGAITVIQYSP--DV--SMFASAD 513 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~--~~~~~i~~~~~s~--~~--~~l~~~~ 513 (612)
.++++....++..|+......+|+++-++.-|.-|+.+...- ....... .....|-.|++-. ++ -+|++.-
T Consensus 200 lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 200 LVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp EEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred EEEEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 345555556788999999999999999998888888763221 1111111 2335677777643 33 3555666
Q ss_pred CCCeEEEEecCCc
Q 007229 514 GNREAIVWDRVSK 526 (612)
Q Consensus 514 ~d~~i~iwd~~~~ 526 (612)
.+++..||+.+..
T Consensus 280 G~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 280 GDNSFAVYDREGP 292 (381)
T ss_dssp GGTEEEEEESSTT
T ss_pred CCCeEEEEecCCC
Confidence 6789999998764
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.77 E-value=0.024 Score=56.19 Aligned_cols=176 Identities=17% Similarity=0.244 Sum_probs=104.8
Q ss_pred CEEEEEeCC--CCceeeEec-----cCCCceEEEEECC---CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEE
Q 007229 39 RSVLIRYLD--KPLHVEFYG-----EHGYPVTVARYSP---NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDL 108 (612)
Q Consensus 39 ~~i~i~~~~--~~~~~~~~~-----~h~~~v~~~~~s~---d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 108 (612)
|.+.||+++ .|+.+..+. .-...+.-+.|.| +.-++..+..+++|++-.+.+... ..+..|..++..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccH
Confidence 677888876 454433322 2223344455554 677888888899998877776542 4555687766665
Q ss_pred E-----------ECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCC-ceEEEEEEcCCCC---------EEEEE
Q 007229 109 Q-----------WSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHS-RRVLSCEFKPTRP---------FRIAT 165 (612)
Q Consensus 109 ~-----------~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~-~~v~~~~~~~~~~---------~~l~~ 165 (612)
+ .||||+.++.+..++...+.++++.. .-++++..+.|+ .+-.|.-|+.+.. +++-+
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence 4 58999999999999865555555554 345666777777 3333333443321 22333
Q ss_pred eecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC------------eEEEEEcCCcEEEEec
Q 007229 166 CGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS------------KLISVSSDRKGLIYDG 219 (612)
Q Consensus 166 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l~~~~~dg~i~vwd~ 219 (612)
...+..+++|.....++. +....+.|..+. -++++ .+++-.-++.|.+|--
T Consensus 311 td~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 311 TDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred ccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 344578999988777766 222223344444 23332 1233445777888853
No 432
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.69 E-value=0.069 Score=30.66 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=27.3
Q ss_pred CceEEEEECCCC---CEEEEeeCcCeEEEeecCCC
Q 007229 60 YPVTVARYSPNG---EWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 60 ~~v~~~~~s~d~---~~las~~~d~~i~iwd~~~~ 91 (612)
+.|.++.|||+. .+||.+-..|.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 59999999999999999964
No 433
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.64 E-value=3.3 Score=42.92 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=71.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccc--------eEEEEEC----------------CCCCeEEEEEcCCcEEEE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNF--------VNCIRFS----------------PDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--------v~~~~~s----------------~~~~~l~~~~~dg~i~vw 217 (612)
.+..++.++.|.-.|..+|+.+..+...... ...+++. .++..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5777888888988999998888775432210 1122221 134578889999999999
Q ss_pred ecCCCCeeeeeeccCCccccEE-------------EEEEec--CCCEEEEEeC----------CCcEEEEEeecCCCCCe
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIY-------------AVSWSP--DGKKVLTVSA----------DKSAKVWEILEDGSGGR 272 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~-------------~i~~~~--~~~~l~~~~~----------dg~i~iw~~~~~~~~~~ 272 (612)
|.++|+....+ +..+.+. .+.-.| .+..+++++. +|.|+-+|. .+++
T Consensus 276 DA~TGk~~W~f----g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da----~TGk 347 (764)
T TIGR03074 276 DADTGKLCEDF----GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV----NTGA 347 (764)
T ss_pred ECCCCCEEEEe----cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC----CCCc
Confidence 99999999776 2222211 111112 1334555542 578999999 8898
Q ss_pred eEeeeecc
Q 007229 273 VIKTFASS 280 (612)
Q Consensus 273 ~~~~~~~~ 280 (612)
.+-.+...
T Consensus 348 l~W~~~~g 355 (764)
T TIGR03074 348 LVWAWDPG 355 (764)
T ss_pred EeeEEecC
Confidence 88777643
No 434
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.60 E-value=0.41 Score=47.31 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=74.2
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc-ccccceEEEEEC--CCCCeEEEEEcCCcEEEEecC------
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR-EHSNFVNCIRFS--PDGSKLISVSSDRKGLIYDGK------ 220 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~------ 220 (612)
..-+.-+.-++ ..+.-+....+.|||...+.....-. ...+.|..+.|. |+++.+++.+..+.|.+|.-.
T Consensus 32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444444444 34444455689999999887655432 456789999996 689999999999999998532
Q ss_pred ---CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 221 ---SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 221 ---~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+-..+..+....-...+|.+..|.++|.+++.+ .+.+.+++-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 112333333322233688999999999755544 357888875
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=95.59 E-value=1.1 Score=43.97 Aligned_cols=145 Identities=11% Similarity=0.043 Sum_probs=78.0
Q ss_pred cCCCeEEEEecC--CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC---eEEEEecCCcceeeec-c
Q 007229 460 PDGSEAIVGGQN--GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR---EAIVWDRVSKEVKLNN-M 533 (612)
Q Consensus 460 ~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~ 533 (612)
-+++..++|+.+ ..+..||..+++......+........ ...-+|+..+.|+.++ .+..||..+.+-.... .
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~--~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPA--VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccE--EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 466777777754 357888887766533333332111112 2233777888887653 4677887765432111 1
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC-----CeEEEEE
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED-----ACIRVWR 608 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d-----~~i~~w~ 608 (612)
....... ++ ..-++++.+.|+ .+.+||.++..+..+..+....... +++..+++..+.||.+ ..+..||
T Consensus 395 ~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 395 YYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEE
Confidence 1011111 12 223667667664 4778998874433333333222222 2333378888888754 4678888
Q ss_pred eccC
Q 007229 609 LATE 612 (612)
Q Consensus 609 ~~~~ 612 (612)
.+++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 7754
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.55 E-value=3.4 Score=42.44 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=51.5
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCC----------CCe--e-eeeec-----cCCccccEEEEEEecC---CCE
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS----------GEK--I-GEFSS-----EDGHHGSIYAVSWSPD---GKK 249 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------~~~--~-~~~~~-----~~~~~~~v~~i~~~~~---~~~ 249 (612)
-.|..+.++|+|++|+..|..| |.|-.+.. |+. . ..+.. .......|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999988766 44443321 111 1 11110 1134568999999995 578
Q ss_pred EEEEeCCCcEEEEEee
Q 007229 250 VLTVSADKSAKVWEIL 265 (612)
Q Consensus 250 l~~~~~dg~i~iw~~~ 265 (612)
|++-..|+.+++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999994
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=95.54 E-value=2 Score=39.74 Aligned_cols=274 Identities=11% Similarity=0.031 Sum_probs=132.6
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEe----ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFY----GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~----~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.....+++|..+.+-++++..+.|.. ..+.|+.-+.. ......+.++.|.++. ..+.+ ..+.| +...++-.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~-~~~~G-~~g~i--~~S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGDE-GWIVG-QPSLL--LHTTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCEEEE-EcCCCCCceECccCCcccccceeeeEEcCCc-EEEeC-CCceE--EEECCCCC
Confidence 44788899997777788887665432 23333332221 1123457788887543 44444 44443 22332211
Q ss_pred eeeeee---ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeec-cCCceEEEEEEcCCCCEEEEEeec
Q 007229 94 LKNEFK---VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 94 ~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
-..... ...+....+....++...++ +..+ .++.-. .|+.-..+. .-...+..+.+.|++. .+++ +.
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G-----~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~-g~ 191 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVG-----AIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAV-SS 191 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCcceee-eccc-----eEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEE-eC
Confidence 111111 01111122222222222333 3222 133322 333222222 2245788999999986 3444 44
Q ss_pred CCeEEE-EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc-CCccccEEEEEEecC
Q 007229 169 DFLVNF-YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE-DGHHGSIYAVSWSPD 246 (612)
Q Consensus 169 d~~i~~-wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~~~~ 246 (612)
.|.+.. ++-...........-...++++.+.++++.+++ +..|.+++=....|......... ......+.++.+.++
T Consensus 192 ~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 192 RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 554443 232211122222234567899999999987665 45676653234555544433111 012345788999988
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
++.++ ++.+|.+. ... ..++.-........ ...........+++..++.+..|.|..++
T Consensus 271 ~~~~~-~G~~G~v~-~S~----d~G~tW~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 271 GEIWA-GGGNGTLL-VSK----DGGKTWEKDPVGEE-VPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCEEE-EcCCCeEE-EeC----CCCCCCeECCcCCC-CCcceEEEEEeCCCceEEECCCceEEEec
Confidence 77554 55677554 333 33333222221110 01122223334567778888888887776
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.45 E-value=0.036 Score=55.01 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCeEEEEEcc--Cccccccee---eccccCceEEEEEcC---CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 471 NGKLHIYSIS--GNTLTEEMV---LEKHRGAITVIQYSP---DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 471 dg~v~i~d~~--~~~~~~~~~---~~~~~~~i~~~~~s~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
-|.+.||+++ .|++.+... .......+.-+.|.| +.-++..+..++++++..+.+... ..+.+|...++.
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTD 229 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCccc
Confidence 3678888875 344322222 222233445555555 667888888899999887766554 445567776665
Q ss_pred EE-----------ecCCCcEEEEeecCcEEEEEEccCCC---cceeeeecccccCeee-EEEecC----------ceEEE
Q 007229 543 LA-----------WSPSSTMVATGSIDTCVIIYEIGKPA---SSRITIKNAHLGGVYG-VAFMDD----------FNVVS 597 (612)
Q Consensus 543 ~~-----------~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~h~~~v~~-~~~~~~----------~~l~s 597 (612)
++ .||||+.+|.++.||.++.|.+.-.+ ..|+...+.|.+.-.. ..|.+. .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 43 68999999999999999999874312 1456666777643222 222221 13444
Q ss_pred cc-CCCeEEEEEe
Q 007229 598 SG-EDACIRVWRL 609 (612)
Q Consensus 598 ~~-~d~~i~~w~~ 609 (612)
++ .+..+++|.-
T Consensus 310 ttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 310 TTDVNREEKFWAE 322 (1283)
T ss_pred cccCCcceeEeec
Confidence 43 4667888864
No 439
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.39 E-value=2.7 Score=40.32 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=49.6
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
...+|.++.+...+. +-.|+.|| +..||..+++....-.... .+|..+..+-.|+ |..|+.+| +.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhh
Confidence 346788888888885 78888888 6677877777665543333 5677776666665 66677655 78887665
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.30 E-value=2.7 Score=39.72 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=87.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCcee--eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTV--GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
....+..++||.+++.+.... .+..++.+... ..-......++.+.|.+++. ++..+.+|.+..- ...++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~-----~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~--l~l~g~~G~l~~S-~d~G~ 311 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGN-----FYLTWEPGQPYWQPHNRASARRIQNMGWRADGG--LWLLTRGGGLYVS-KGTGL 311 (398)
T ss_pred ceeeEEEcCCCCEEEEECCcc-----EEEecCCCCcceEEecCCCccceeeeeEcCCCC--EEEEeCCceEEEe-cCCCC
Confidence 345567789988887776654 24456666542 12223356789999999997 3344456655433 22332
Q ss_pred -----eeeccc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 182 -----FKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 182 -----~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
...... .....+.++.|.++++.++ ++..|.+.... ..|+.-........-....+.+.|.++++.++++
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G- 388 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG- 388 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence 111111 1223588999998877555 56678666654 5565544442112345678899998777756554
Q ss_pred CCCcEEEE
Q 007229 255 ADKSAKVW 262 (612)
Q Consensus 255 ~dg~i~iw 262 (612)
.+|.|.-|
T Consensus 389 ~~G~il~~ 396 (398)
T PLN00033 389 NDGVLLRY 396 (398)
T ss_pred CCcEEEEe
Confidence 67776544
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.27 E-value=0.47 Score=46.87 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=76.4
Q ss_pred eccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec-cCCCceEEEEEC--CCCCEEEEeeCcCeEEE
Q 007229 10 YACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYS--PNGEWIASADVSGSVRI 85 (612)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s--~d~~~las~~~d~~i~i 85 (612)
....-.+.....+-+.-|.-++.-++-+ +..+.|||...+.....-. ...+.|..+.|. |||+.+.+.+..+.|.+
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 3333344455667777777666655555 5799999999887543322 357889999986 58998888889999999
Q ss_pred eecC-----CCce----ee-eeeeecC-CCeEEEEECCCCCEEEEEeC
Q 007229 86 WGTH-----NGFV----LK-NEFKVLS-GRIDDLQWSPDGLRIVACGD 122 (612)
Q Consensus 86 wd~~-----~~~~----~~-~~~~~~~-~~i~~~~~s~~~~~l~~~~~ 122 (612)
+.-. ...+ +. ..+..+. .+|.+..|.++|..++.+|.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 8542 2111 11 1223333 57999999999977776654
No 442
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.24 E-value=3.6 Score=40.91 Aligned_cols=199 Identities=12% Similarity=0.175 Sum_probs=91.9
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCC----Cceeeeeee---ecCCCeEEEEECC-----CCCEEEEEeC-CCCe
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHN----GFVLKNEFK---VLSGRIDDLQWSP-----DGLRIVACGD-GKGK 126 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~----~~~~~~~~~---~~~~~i~~~~~s~-----~~~~l~~~~~-~~~~ 126 (612)
..-..++..|.|+.+|.+..++.+.|+-+.. .......+. .....|..++|.. +...++.--. ....
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~ 123 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR 123 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence 3456799999999999999999999999887 110111111 1266788999985 3334444322 2334
Q ss_pred eeEEEEEecCCceeeee-ccCC----------ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC--C--eeeec-c--cc
Q 007229 127 SFVRAFMWDSGTTVGDF-DGHS----------RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP--F--KFKLS-H--RE 188 (612)
Q Consensus 127 ~~i~i~~~~~~~~~~~~-~~~~----------~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~--~~~~~-~--~~ 188 (612)
..+..+.|+....+... .... .+..-+..-....+ ++.++.. .+..-+... + ..... . ..
T Consensus 124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~gg-llV~~~~-~i~y~~~~~~~~~~~~~~~~~~~~~ 201 (504)
T PF10433_consen 124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGG-LLVGGEN-IIIYKNHLIGSGDYSFLSIPSPPSS 201 (504)
T ss_dssp EEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-S-EEEEESS-EEEEEE------TTEEEEE--H-HH
T ss_pred ceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcE-EEEECCE-EEEEecccccccccccccccCCccC
Confidence 45677777754433221 1111 11112222222222 3333333 233222111 1 11111 1 01
Q ss_pred cccceEEEE-------ECCCCCeEEEEEcCCcEEEEecCCCC---eeeeeeccCCc-cccEEEEEEecCC-CEEEEEeCC
Q 007229 189 HSNFVNCIR-------FSPDGSKLISVSSDRKGLIYDGKSGE---KIGEFSSEDGH-HGSIYAVSWSPDG-KKVLTVSAD 256 (612)
Q Consensus 189 ~~~~v~~~~-------~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~-~~~v~~i~~~~~~-~~l~~~~~d 256 (612)
...-+.+.+ ...++..++.+.++|.+....+.... .+..+ +. .....++++..+| .+++.|+.-
T Consensus 202 ~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~----g~~~~~~s~l~~l~~g~d~lf~gs~~ 277 (504)
T PF10433_consen 202 SSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYL----GTLCSIASSLTYLKNGGDYLFVGSEF 277 (504)
T ss_dssp HTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE----EE--S-ESEEEEESTT--EEEEEESS
T ss_pred CCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc----CCcCChhheEEEEcCCCEEEEEEEec
Confidence 122233333 24566788889999999988776544 22222 22 4455677777655 367777776
Q ss_pred CcEEEEEe
Q 007229 257 KSAKVWEI 264 (612)
Q Consensus 257 g~i~iw~~ 264 (612)
|.=.++.+
T Consensus 278 gds~l~~~ 285 (504)
T PF10433_consen 278 GDSQLLQI 285 (504)
T ss_dssp S-EEEEEE
T ss_pred CCcEEEEE
Confidence 65555555
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.21 E-value=1.5 Score=36.39 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=88.0
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC---C---eEEEE---ec
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN---R---EAIVW---DR 523 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~---~i~iw---d~ 523 (612)
...++-++. +.|+++.....|.+|++..........+..- +.|..+.++..|.+|++--++ . .+|+| +.
T Consensus 20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 333444432 4555556777899999996555555666554 789999999999999987443 2 56665 22
Q ss_pred C--Ccceeeecccc---------------------cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCc--ce--eee
Q 007229 524 V--SKEVKLNNMLF---------------------HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS--SR--ITI 576 (612)
Q Consensus 524 ~--~~~~~~~~~~~---------------------~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~--~~~ 576 (612)
. ...++.....| -..++.+++-.|-..-|+.|+ ++.+.+|.+..... +. +.-
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEe
Confidence 2 11222112222 234567788777544455665 45699998865210 00 001
Q ss_pred e-----ccccc-CeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 577 K-----NAHLG-GVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 577 ~-----~~h~~-~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
+ .-|.+ ....+++. +.+++..+ |-.+++.++.
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic-~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC-EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred chhhhhheecCceEEEEEEE-eeEEEEec-CCEEEEEEEe
Confidence 1 11111 24566665 66777666 4467787764
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.17 E-value=0.11 Score=29.82 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=26.9
Q ss_pred CceEEEEEcCCC---cEEEEEcCCCeEEEEecCCc
Q 007229 495 GAITVIQYSPDV---SMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 495 ~~i~~~~~s~~~---~~l~~~~~d~~i~iwd~~~~ 526 (612)
+.|+++.|||+. .+|+.+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58998888899999999864
No 445
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.12 E-value=2.7 Score=38.83 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=43.7
Q ss_pred ccceEEEEEEcc-------CCCeEEEEecCCeEEEEEccCc-cccccee-eccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 449 LGFTVTACAIAP-------DGSEAIVGGQNGKLHIYSISGN-TLTEEMV-LEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 449 ~~~~i~~~~~s~-------~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
+...+..+.|-. .+.+++.....+.|....++.+ ....... +.....++..+++.|||.+.++.+.+|.|+
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 334566666653 3455666555678888888644 2222222 334455899999999999999988888764
No 446
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.12 E-value=3.3 Score=39.77 Aligned_cols=150 Identities=8% Similarity=-0.071 Sum_probs=74.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC-ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS-RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 103 ~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
..|..+.+..+|.+ -+++.++ +..++..+++.++.-.... .+|..+..+-.++ +..|+.+| +.+.+.+..+
T Consensus 165 ~~V~aLv~D~~g~l-WvgT~dG----L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 165 TPVVALVFDANGRL-WVGTPDG----LSYFDAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred ccceeeeeeccCcE-EEecCCc----ceEEccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhcc
Confidence 35666677666643 3445554 1223333444444433333 5566666666664 88888777 6666655533
Q ss_pred eeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 182 FKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 182 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
...-.. -....|..+.-..+| .+-.|+..|.. ......+...............|.++....+|. |-+++.+|.++
T Consensus 237 ~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~-r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~ 313 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLW-RTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR 313 (671)
T ss_pred ccccCCCCcchheeeeecccCC-CEEEeecccce-eEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence 222111 122334444433344 35556655533 233343333333322212234566777777776 55566666555
Q ss_pred EEE
Q 007229 261 VWE 263 (612)
Q Consensus 261 iw~ 263 (612)
+-+
T Consensus 314 ~~~ 316 (671)
T COG3292 314 YLT 316 (671)
T ss_pred Eec
Confidence 543
No 447
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.10 E-value=4.9 Score=41.70 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
+..|+.++.++.|.-.|..+|+.+-++.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFD 221 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc
Confidence 4567778888999999999999888873
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.96 E-value=1.9 Score=43.39 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=90.2
Q ss_pred CCeEEEEecCCeEEEEEccCcccccc----eeec----------------cccCceEEEEEcC--CCcEEEEEcCCCeEE
Q 007229 462 GSEAIVGGQNGKLHIYSISGNTLTEE----MVLE----------------KHRGAITVIQYSP--DVSMFASADGNREAI 519 (612)
Q Consensus 462 ~~~l~~~~~dg~v~i~d~~~~~~~~~----~~~~----------------~~~~~i~~~~~s~--~~~~l~~~~~d~~i~ 519 (612)
+.+++++. .+.|+||+++.-...+. ..+. .....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66677655 67899998864332110 0000 0111355554443 456889999999999
Q ss_pred EEecCCcc-----------e---e---e-ecccccccceeEEEec--CCCcEEEEeecCcEEEEEEccCCCccee--eee
Q 007229 520 VWDRVSKE-----------V---K---L-NNMLFHTARINCLAWS--PSSTMVATGSIDTCVIIYEIGKPASSRI--TIK 577 (612)
Q Consensus 520 iwd~~~~~-----------~---~---~-~~~~~~~~~i~~~~~s--~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~ 577 (612)
+|.+++-. . . . .....-....+.++++ ...++||+++....|.||-+.... ... ..-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~-~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD-ERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc-cccccccc
Confidence 99652210 0 0 0 0011123468889998 788899999988889888776521 111 112
Q ss_pred cccccCeeeEEEe-cC---c---eEEEccCCCeEEEEEe
Q 007229 578 NAHLGGVYGVAFM-DD---F---NVVSSGEDACIRVWRL 609 (612)
Q Consensus 578 ~~h~~~v~~~~~~-~~---~---~l~s~~~d~~i~~w~~ 609 (612)
..|...|-+|+|. +. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2366679999998 22 2 6888899999999987
No 449
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.94 E-value=4.4 Score=40.31 Aligned_cols=367 Identities=11% Similarity=0.003 Sum_probs=160.0
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCC--------cee-eEeccCCCceEEEEECC-----CCCEEEEe--eCc-
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKP--------LHV-EFYGEHGYPVTVARYSP-----NGEWIASA--DVS- 80 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~--------~~~-~~~~~h~~~v~~~~~s~-----d~~~las~--~~d- 80 (612)
....-++.+|.|+.++.+. ++.+.|+-++.. ... ..+ .....|..++|-. +...+|.- ...
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 3456799999999999987 899999988761 111 111 1267788888885 33445442 222
Q ss_pred -CeEEEee--cCCCce------eee--eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC---ceeeeecc-
Q 007229 81 -GSVRIWG--THNGFV------LKN--EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG---TTVGDFDG- 145 (612)
Q Consensus 81 -~~i~iwd--~~~~~~------~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~- 145 (612)
..+..++ ...+.. ... ....+..+..-+..-.....++.++.+- +....-+.. ........
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~~----i~y~~~~~~~~~~~~~~~~~~ 198 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGENI----IIYKNHLIGSGDYSFLSIPSP 198 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEESSE----EEEEE------TTEEEEE--H
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECCEE----EEEecccccccccccccccCC
Confidence 2244444 433211 000 0011222322222222233444444442 112211111 11122211
Q ss_pred ---CCceEEEEEE-------cCCCCEEEEEeecCCeEEEEeCCCCe--eeeccccc-ccceEEEEECCCC-CeEEEEEcC
Q 007229 146 ---HSRRVLSCEF-------KPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREH-SNFVNCIRFSPDG-SKLISVSSD 211 (612)
Q Consensus 146 ---~~~~v~~~~~-------~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~d 211 (612)
...-+.+.+. ..++. .++.+.++|.+..-.+.... .....-+. .....++.+..+| .+|+.|+.-
T Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~~~~-~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~ 277 (504)
T PF10433_consen 199 PSSSSSLWTSWARPERNISYDKDGD-RILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF 277 (504)
T ss_dssp -HHHTS-EEEEEE------SSTTSS-EEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS
T ss_pred ccCCCceEEEEEeccccceecCCCC-EEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec
Confidence 1233344332 34444 68889999999888765533 12222233 4556677776655 477778774
Q ss_pred C--cEEEEecCCCCeeeeeeccCCccccEEEEEEecC----CC------EEEEEe---CCCcEEEEEeecCCCCCeeEee
Q 007229 212 R--KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD----GK------KVLTVS---ADKSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 212 g--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~------~l~~~~---~dg~i~iw~~~~~~~~~~~~~~ 276 (612)
| .+.-|....-+.+..+ ..-+||..+++.+. .. .+++++ .+|.+++..- .-+-....
T Consensus 278 gds~l~~~~~~~l~~~~~~----~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~----Gi~~~~~~ 349 (504)
T PF10433_consen 278 GDSQLLQISLSNLEVLDSL----PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN----GIGIEGLE 349 (504)
T ss_dssp S-EEEEEEESESEEEEEEE--------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE----SBEEE--E
T ss_pred CCcEEEEEeCCCcEEEEec----cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec----cCCceeee
Confidence 4 4555554444555555 56788999998642 11 455554 4678888864 11111001
Q ss_pred eeccCccccceeeeeeeccC--CEEEEEEcCCEEEEEEcCC--CCCCceeec--CcccceeEEEEEecCCcEEEEEecCC
Q 007229 277 FASSTSNAVEDMLVGCLWQN--DHLITVSLGGIISIFSASN--LDKAPLSFS--GHVKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
.....-.. -..++.+.... ...+..+....-.++.+.. ......... +-......+....-.+..++=... .
T Consensus 350 ~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~-~ 427 (504)
T PF10433_consen 350 LASSELPG-VTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTP-K 427 (504)
T ss_dssp EEEEEEST-EEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEES-S
T ss_pred eeccCCCC-ceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEec-C
Confidence 11111111 22333333322 4444444555556666541 111111111 222222233333211444444443 3
Q ss_pred cEEEEEcCCceeeeec-eecccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 351 AIIKWIRGVGYSSKLE-KKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
.|++.+....+..... ......|.+.+..+.+++.+..++.+..+.+....
T Consensus 428 ~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~ 479 (504)
T PF10433_consen 428 GIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNK 479 (504)
T ss_dssp EEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTE
T ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCc
Confidence 4677776555544332 22455666666677777777777777777665443
No 450
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.76 E-value=0.29 Score=39.98 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=48.1
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCc--------------------eeeEecc---------------------CC
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPL--------------------HVEFYGE---------------------HG 59 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~--------------------~~~~~~~---------------------h~ 59 (612)
..+++||.|| .||++.+..|.|.+..++. ....+.. ..
T Consensus 7 ~~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 7 PNALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CcCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 3589999999 5788888888888443322 0000100 11
Q ss_pred CceEEEEECCCC------CEEEEeeCcCeEEEeecCCC
Q 007229 60 YPVTVARYSPNG------EWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 60 ~~v~~~~~s~d~------~~las~~~d~~i~iwd~~~~ 91 (612)
..|.+++|||-| -+||+...++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 278899999954 37888899999999987753
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.59 E-value=0.25 Score=42.05 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=51.5
Q ss_pred EcCCCcEEEEEcCCCeEEEEecCCcceeeec------cc-------ccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 502 YSPDVSMFASADGNREAIVWDRVSKEVKLNN------ML-------FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 502 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+..++.+|++...+|.+++||+.+++..... +. .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999998875433 22 2456788999998888777655 57789998775
No 452
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.55 E-value=3.9 Score=37.85 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=28.4
Q ss_pred cCCCeEEEEecCC----eEEEEEccCcccccceeeccccCce---EEE-EEcCCCcEEEEEcCC
Q 007229 460 PDGSEAIVGGQNG----KLHIYSISGNTLTEEMVLEKHRGAI---TVI-QYSPDVSMFASADGN 515 (612)
Q Consensus 460 ~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~i---~~~-~~s~~~~~l~~~~~d 515 (612)
.++++.+.|+.++ .+.+||..+.+......+.....+. ... ....++++++.|+.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 3556666666543 3568888877663322221001111 111 122356788888765
No 453
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.51 E-value=7.1 Score=40.73 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=90.0
Q ss_pred eEEEEEEccCCC--eEEEEe-----------cCCeEEEEEccC-cccccceeeccccCceEEEEEcCCCcEEEEEcCCCe
Q 007229 452 TVTACAIAPDGS--EAIVGG-----------QNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNRE 517 (612)
Q Consensus 452 ~i~~~~~s~~~~--~l~~~~-----------~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 517 (612)
.+..+.|+.... ++++|. .+|.++.|++-. ++......-..-.+++. +..|-..++.+|- ...
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lagv-G~~ 955 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGV-GRF 955 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEec-ccE
Confidence 455666665333 344443 245577777632 22100111111223344 4557555555553 358
Q ss_pred EEEEecCCcceeeeccccc-ccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccc--ccCeeeEEEecCce
Q 007229 518 AIVWDRVSKEVKLNNMLFH-TARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH--LGGVYGVAFMDDFN 594 (612)
Q Consensus 518 i~iwd~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~ 594 (612)
+++||+...+++.+....+ ...|+.+++ .+..+++|..--.+.++..+... ..+..+..- ...|+.+.+.|...
T Consensus 956 l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~-n~l~~fadD~~pR~Vt~~~~lD~~t 1032 (1205)
T KOG1898|consen 956 LRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED-NQLIVFADDPVPRHVTALELLDYDT 1032 (1205)
T ss_pred EEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC-CeEEEEeCCCccceeeEEEEecCCc
Confidence 9999998887764433323 667888888 46688888876678777776644 555554332 23577776668888
Q ss_pred EEEccCCCeEEEEEec
Q 007229 595 VVSSGEDACIRVWRLA 610 (612)
Q Consensus 595 l~s~~~d~~i~~w~~~ 610 (612)
++.+..=|.+.+=++.
T Consensus 1033 vagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1033 VAGADRFGNIAVVRIP 1048 (1205)
T ss_pred eeeccccCcEEEEECC
Confidence 8888877777765553
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=5.8 Score=39.65 Aligned_cols=195 Identities=11% Similarity=0.059 Sum_probs=97.1
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece---ecccceEEEEeeccEE
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK---KYDARIKCLAAVEEVI 383 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~~~~~~l 383 (612)
.|.+|+.. +..+.........+..+.|++ ...|+....+|++.+|++.......... .....|....+..+-+
T Consensus 65 ~I~If~~s--G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS--GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc--ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 45555533 233333333344777888887 7888999999999999987655444211 1333344444422334
Q ss_pred EEecCCCeEEEEe-cCCCCCCccceecc-CCCcceeeecCCC-CcEEEEEee--ccEEEee---cccceeeec-ccceEE
Q 007229 384 FTAGFDNKVWRVP-LCEGECGDAEHIDV-GSQPLDLSLALSS-PELALVSTE--SGVILLD---SLKVMSKID-LGFTVT 454 (612)
Q Consensus 384 ~~~~~~~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~---~~~~~~~~~-~~~~i~ 454 (612)
+.-..+|.+.+.+ ...........+.. ..+..+.+..+.+ ....+..-. -+..+.. .......+. ....+.
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 4444444443332 22222111111111 1111222222221 111111111 1111111 111111122 336788
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCC
Q 007229 455 ACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDV 506 (612)
Q Consensus 455 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (612)
.+.+||+.++|+.-...|.|.+-+.+..+.........|.-+ ..++|.-+.
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgnd 271 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGND 271 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCC
Confidence 899999999999999999999998887665333333333332 255665443
No 455
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.38 E-value=5.8 Score=40.13 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=76.9
Q ss_pred ceEEEEEEcc--CCCeEEEEecCCeEEEEEccCcc------------------cccceeeccccCceEEEEEc--CCCcE
Q 007229 451 FTVTACAIAP--DGSEAIVGGQNGKLHIYSISGNT------------------LTEEMVLEKHRGAITVIQYS--PDVSM 508 (612)
Q Consensus 451 ~~i~~~~~s~--~~~~l~~~~~dg~v~i~d~~~~~------------------~~~~~~~~~~~~~i~~~~~s--~~~~~ 508 (612)
..|+-|.+.. +...|+.+..||.|.+|.++.-. ..+...+. -......++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 3455565544 55788999999999999763200 00111111 23468889998 78889
Q ss_pred EEEEcCCCeEEEEecCCc--ceeeecccccccceeEEEecCCC---c---EEEEeecCcEEEEEEc
Q 007229 509 FASADGNREAIVWDRVSK--EVKLNNMLFHTARINCLAWSPSS---T---MVATGSIDTCVIIYEI 566 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~s~~~---~---~l~s~~~d~~i~iwd~ 566 (612)
||+++....|.||-.... +.....-..|...|-+|.|-++. . +|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999998888888865442 21111112256678999998744 2 7888999999999888
No 456
>PHA02790 Kelch-like protein; Provisional
Probab=94.23 E-value=3.5 Score=40.53 Aligned_cols=186 Identities=9% Similarity=-0.049 Sum_probs=82.7
Q ss_pred cCCCEEEEec-C-----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--CeEEEeecCCCceeeeeee
Q 007229 28 PKTDTILYCN-G-----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 28 ~d~~~l~~~~-~-----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~~~~~~~ 99 (612)
.++..++.|+ + ..+..||..+++-...-.-....-......-+|++.+.|+.+ ..+..||..+.+- ....
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W--~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAW--VNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeE--EECC
Confidence 3444555554 2 367778887754332111111111111223477888888754 3577888765532 1111
Q ss_pred ecCCCe-EEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe
Q 007229 100 VLSGRI-DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176 (612)
Q Consensus 100 ~~~~~i-~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 176 (612)
.-..+. ...+..-+|+..+.||.+.....+..++..+++ .+..+....... +++ .-++. +.+.|+ .+.+||
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~-IYv~GG---~~e~yd 421 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRR-LFLVGR---NAEFYC 421 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCE-EEEECC---ceEEec
Confidence 111111 112223367777777755432233444433221 111111111111 121 22343 566663 467888
Q ss_pred CCCCeeeec--ccccccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCCC
Q 007229 177 GPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSGE 223 (612)
Q Consensus 177 ~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 223 (612)
..+.+-... +.........+. -+++..+.|+.+ ..+..||.++++
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 776554322 221112222222 256666666654 245566665543
No 457
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.22 E-value=8.2 Score=40.29 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=67.9
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE--EecCCcceeeecc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV--WDRVSKEVKLNNM 533 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i--wd~~~~~~~~~~~ 533 (612)
.|+.|-+.++.+| ....+++||+...++.....++.-...|+.+++ .+..++.|+..-.+.+ |+-+..+.+.-.-
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 4556655555544 446899999998877555555544566787776 4567888876656655 4544454432222
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..-...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 2234457777666 444677777777777776643
No 458
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.19 E-value=1.4 Score=41.34 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=90.7
Q ss_pred CCCCCEEEE-eeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCC--------CCEEEEEeCCCCeeeEEEEEec---
Q 007229 68 SPNGEWIAS-ADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD--------GLRIVACGDGKGKSFVRAFMWD--- 135 (612)
Q Consensus 68 s~d~~~las-~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~--------~~~l~~~~~~~~~~~i~i~~~~--- 135 (612)
..|..+|.. |+....+.--|++.|+ +......|..- -+.|.|+ .+.|+..+..+ |+..+
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s------vFrIDPR~ 546 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS------VFRIDPRA 546 (776)
T ss_pred cCCcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc------eEEecccc
Confidence 335555543 5555667777888887 55566666554 5667774 34566666655 55555
Q ss_pred CCceeeeecc----CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 136 SGTTVGDFDG----HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 136 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
.|..+..... ......+..-...| .+|.++..|-|++||--..+....+++....|..+..+.+|+++++.|.
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk- 623 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK- 623 (776)
T ss_pred cCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-
Confidence 3433332221 11122233333344 4999999999999996666666667888889999999999999887764
Q ss_pred CcEEEEecC
Q 007229 212 RKGLIYDGK 220 (612)
Q Consensus 212 g~i~vwd~~ 220 (612)
..+.+-|+.
T Consensus 624 ~yllL~d~~ 632 (776)
T COG5167 624 NYLLLTDVP 632 (776)
T ss_pred ceEEEEecc
Confidence 567777753
No 459
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.05 E-value=4.6 Score=36.75 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=116.7
Q ss_pred ccCCCEEEEecCCEEEEEeCCC--CceeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCCCce----------
Q 007229 27 NPKTDTILYCNGRSVLIRYLDK--PLHVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHNGFV---------- 93 (612)
Q Consensus 27 s~d~~~l~~~~~~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~~~---------- 93 (612)
.-++++|+.|.+..+++.++.. .+..+ + .+...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 10 ~~~~~~lL~GTe~Gly~~~~~~~~~~~~k-l-~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLNISDQPGTLEK-L-IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred ccCCcEEEEEeCCceEEEEcccCCCCeEE-e-cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccc
Confidence 3345789999987777778765 23333 2 3577999999999887777654 444599999853321
Q ss_pred ----eeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCc----eeeee---c-cCCceEEEEEEcCC--
Q 007229 94 ----LKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGT----TVGDF---D-GHSRRVLSCEFKPT-- 158 (612)
Q Consensus 94 ----~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~----~~~~~---~-~~~~~v~~~~~~~~-- 158 (612)
.....-.+..+........... .++.+.... .+.++.|.... ....+ . --..++..+..+++
T Consensus 88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~---~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T smart00036 88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQS---SVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFE 164 (302)
T ss_pred cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCC---eEEEEEccChhhhhhhhcccccccCCCCccceEeeeccccc
Confidence 0001112333333333332221 222222222 46777776321 11110 0 11223333333333
Q ss_pred CCEEEEEeecCCeEEEEeCCC--Ceeee-----cccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCCC-Ceee--e
Q 007229 159 RPFRIATCGEDFLVNFYEGPP--FKFKL-----SHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG-EKIG--E 227 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~--~~~~~-----~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~--~ 227 (612)
.. .++.|+..+...++++.. ..... ...... .++.... -+++.+|++ .|....+-|.. | +... .
T Consensus 165 ~~-~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc--~~~~~v~Vn~~-G~~~~r~~~ 239 (302)
T smart00036 165 RP-GICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLC--YDEFGVFVNLY-GKRRSRNPI 239 (302)
T ss_pred ce-EEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEE--ECcEEEEEeCC-CCccccceE
Confidence 33 466665542344444432 11000 011111 3333333 445555553 34455566644 4 2211 2
Q ss_pred eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 228 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
+ .-...+.++++. ..+++.-.. ..|.++++ .+++.++.+..
T Consensus 240 l----~w~~~p~~~~~~--~pyll~~~~-~~ievr~l----~~~~l~q~i~~ 280 (302)
T smart00036 240 L----HWEFMPESFAYH--SPYLLAFHD-NGIEIRSI----KTGELLQELAD 280 (302)
T ss_pred E----EcCCcccEEEEE--CCEEEEEcC-CcEEEEEC----CCCceEEEEec
Confidence 2 234556677777 356666654 56999999 88888887764
No 460
>PLN02153 epithiospecifier protein
Probab=93.98 E-value=5.4 Score=37.26 Aligned_cols=138 Identities=11% Similarity=0.086 Sum_probs=64.8
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeecc---ccCceEEEEEcCCCcEEEEEcCC-----------CeEEEE
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEK---HRGAITVIQYSPDVSMFASADGN-----------REAIVW 521 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----------~~i~iw 521 (612)
++++++.|+.+ ..+.+||+.+.+......+.. ........+..-++++.+.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45556666543 257889988776532222211 11111222223456777777753 247788
Q ss_pred ecCCcceeeeccc----ccccceeEEEecCCCcEEEEeecC-------------cEEEEEEccCCCcceeeeecc-ccc-
Q 007229 522 DRVSKEVKLNNML----FHTARINCLAWSPSSTMVATGSID-------------TCVIIYEIGKPASSRITIKNA-HLG- 582 (612)
Q Consensus 522 d~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~-h~~- 582 (612)
|..+.+-...... ........+. -++++.+.++.+ ..+.+||..+..+..+..... ...
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 8877643211100 0011111222 256666655432 358889988743222221100 111
Q ss_pred CeeeEEEecCceEEEccC
Q 007229 583 GVYGVAFMDDFNVVSSGE 600 (612)
Q Consensus 583 ~v~~~~~~~~~~l~s~~~ 600 (612)
...++...+++.++.|+.
T Consensus 243 ~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred ceeeeEEECCEEEEECcc
Confidence 112222226777778775
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.97 E-value=5 Score=37.99 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=48.3
Q ss_pred CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
...++|+++..|-|++||--...- ...+++-...|..+..+.+|+++++.+.. .+.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rA--KtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRA--KTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchh--hhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 456899999999999999754443 45677788899999999999998877764 67777654
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=1.8 Score=40.90 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=60.6
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT 139 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~ 139 (612)
-.|..+..|+.|..+|-++.+|.+.++=..... ....+...+..|.|=.|+-+.+.+.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-~~s~~eDgk~~v~CRt~~i~~~~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-KNSEFEDGKSTVNCRTTPVAERFFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcC-ccceecCCCceEEEEeecccceeeccC-------------------
Confidence 357788899999999999888866554221111 111222222234444443333222111
Q ss_pred eeeeccCCceEEEEEEcCCC--CEEEEEeecCCeEEEEeCCCCeeeeccc
Q 007229 140 VGDFDGHSRRVLSCEFKPTR--PFRIATCGEDFLVNFYEGPPFKFKLSHR 187 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 187 (612)
..-.+..++|+|+. ...+..-+.|.+||+||+.....+....
T Consensus 164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred ------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 11245667888876 4468888899999999998877665433
No 463
>PLN02193 nitrile-specifier protein
Probab=93.94 E-value=6.9 Score=38.42 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=66.6
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeecc-ccCceEEEEEcCCCcEEEEEcCCC-----eEEEEecCCccee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEK-HRGAITVIQYSPDVSMFASADGNR-----EAIVWDRVSKEVK 529 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~ 529 (612)
++++.+.|+.+ ..+..||+.+.+......+.. ...+-...+..-++++.+.|+.++ .+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 44555666544 358889988876643322210 011111112223566777777543 4677887776532
Q ss_pred eeccc----ccccceeEEEecCCCcEEEEeecC----cEEEEEEccCCCcceeeeecc-ccc-CeeeEEEecCceEEEcc
Q 007229 530 LNNML----FHTARINCLAWSPSSTMVATGSID----TCVIIYEIGKPASSRITIKNA-HLG-GVYGVAFMDDFNVVSSG 599 (612)
Q Consensus 530 ~~~~~----~~~~~i~~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~-h~~-~v~~~~~~~~~~l~s~~ 599 (612)
..... .....-..+. -++++.+.++.+ ..+.+||..+..+..+..... ... ...+++..+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 11100 0111111122 266777777655 458899998733222221100 111 11122222677788888
Q ss_pred CC
Q 007229 600 ED 601 (612)
Q Consensus 600 ~d 601 (612)
.+
T Consensus 386 ~~ 387 (470)
T PLN02193 386 EI 387 (470)
T ss_pred cc
Confidence 53
No 464
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=93.61 E-value=9.7 Score=39.01 Aligned_cols=334 Identities=17% Similarity=0.132 Sum_probs=162.9
Q ss_pred eeEEEEccCCCEEEEecC----------CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCe--EEEeec
Q 007229 21 GILISGNPKTDTILYCNG----------RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS--VRIWGT 88 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~----------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~--i~iwd~ 88 (612)
+....++|++..+++... ..+.+-|... .....+...+..+.|+|||+.++..+.++. ..+|-+
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~ 90 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLV 90 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEE
Confidence 344567777777777653 2333333332 224457788899999999999998874333 344433
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe--
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC-- 166 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-- 166 (612)
.... ....+...+....|+|++..++....... ....+. . .+.++.-.....+
T Consensus 91 ~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------~~~~~~-------------~-~~~~~~~~~~~~~~g 145 (620)
T COG1506 91 DVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGA-------SKRDGG-------------D-HLFVDRLPVWFDGRG 145 (620)
T ss_pred ecCC----ceeeeecccccceeCCCCCeEEEEecccc-------cccCCc-------------e-eeeecccceeecCCC
Confidence 3221 34556678889999999999887322210 000111 0 0111111011111
Q ss_pred ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCc-------EEEEecCCCCeeeeeeccCCccccEE
Q 007229 167 GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK-------GLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+....+.+.|... ...........+....++++++.++....+.. ..++...++...... .....+.
T Consensus 146 ~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 219 (620)
T COG1506 146 GERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLT----PGEGSIS 219 (620)
T ss_pred CcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEc----CCCceee
Confidence 1234455555554 33334445667777778877777776655442 233433344444444 4555688
Q ss_pred EEEEecCCCEEEEEeCCCc--------EEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEc-CCEEE
Q 007229 240 AVSWSPDGKKVLTVSADKS--------AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSL-GGIIS 309 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~--------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~ 309 (612)
.+.|.++++.++..+.... +.+++. +.++................+... .. ...++.+.. .+...
T Consensus 220 ~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 294 (620)
T COG1506 220 KLAFDADGKSIALLGTESDRGLAEGDFILLLDG----ELGEVDGDLSSGDDTRGAWAVEGG-LDGDGLLFIATDGGGSSP 294 (620)
T ss_pred eeeeCCCCCeeEEeccCCccCccccceEEEEec----cccccceeeccCCcccCcHHhccc-cCCCcEEEEEecCCCceE
Confidence 8899999986655443321 222221 112111100000000000001111 23 333444444 57777
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE-Eec---CCcEEEEEcCCceeeeeceecccceEEEEe-eccEEE
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS-SSY---DGAIIKWIRGVGYSSKLEKKYDARIKCLAA-VEEVIF 384 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~---dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~~~~l~ 384 (612)
++.............+....+....+ + +..++. -+. -..+.+++. +.................+ ..+.+-
T Consensus 295 l~~~~~~~~~~~~~~~~~~~v~~f~~-~--~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~ 369 (620)
T COG1506 295 LFRVDDLGGGVEGLSGDDGGVPGFDV-D--GRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVT 369 (620)
T ss_pred EEEEeccCCceeeecCCCceEEEEee-C--CCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEE
Confidence 77755444444444444445555544 2 343333 222 234666654 2222222223333333333 445555
Q ss_pred EecCCC-eEEEEecCC
Q 007229 385 TAGFDN-KVWRVPLCE 399 (612)
Q Consensus 385 ~~~~~~-~i~~~~~~~ 399 (612)
..+.|| ++.-|-+..
T Consensus 370 ~~~~dG~~i~~~l~~P 385 (620)
T COG1506 370 YKSNDGETIHGWLYKP 385 (620)
T ss_pred EEcCCCCEEEEEEecC
Confidence 556666 666665543
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=2.1 Score=45.57 Aligned_cols=151 Identities=9% Similarity=0.050 Sum_probs=101.4
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEEC--------CCCCEEEEeeCcCeEEEeecCCCce
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYS--------PNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s--------~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
+.+-+-|.=...-...|+.+++|+.+++.....+.+-++.|..|..- |.=++|..-..--.|.|+-+.-.+.
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~ 161 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEF 161 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccc
Confidence 45556666666677779999999999988888888888888887643 3334444444445677765542221
Q ss_pred --ee------eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--------CCce----------------ee
Q 007229 94 --LK------NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--------SGTT----------------VG 141 (612)
Q Consensus 94 --~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--------~~~~----------------~~ 141 (612)
.. ..+......|.++....+|+.+.+|-+++ +|..- ..++ +.
T Consensus 162 ~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~------lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 162 TGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGN------LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred cCcccccccceeeecCCceEEEEEeccCCcEEEeecCCC------EEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 01 11223355788999888898887776664 43221 1111 11
Q ss_pred eec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC
Q 007229 142 DFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 142 ~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
.+. .+.++|..++.....+ ++.+-++.|+|.+||+..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccC
Confidence 233 5678999999998877 799999999999999876
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.46 E-value=2.2 Score=39.51 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=93.4
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccC----ceE-EEEEcCCCcEEEEEcCCCeEEEE-e
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG----AIT-VIQYSPDVSMFASADGNREAIVW-D 522 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~----~i~-~~~~s~~~~~l~~~~~d~~i~iw-d 522 (612)
....+..+-..|||+.+.+-+. .++.++++.+..+...+......+ .|+ ++..-..|.-|..++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456778889999999888665 679999988766532322222111 122 22223456678888899998887 5
Q ss_pred cCCccee-e---ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 523 RVSKEVK-L---NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 523 ~~~~~~~-~---~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
....... . ..+.-...++..+.--.+.+-+++-+..|++.++.... . +. ..+..-...+..+++| ...+|++
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~-~~-lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-E-KL-LLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc-C-cc-eehhhhhcCcceeeeCcccchhee
Confidence 4433221 0 11111223344443333445677777888888877655 2 22 2222233366778899 6667766
Q ss_pred ccCCCeEEEEEecc
Q 007229 598 SGEDACIRVWRLAT 611 (612)
Q Consensus 598 ~~~d~~i~~w~~~~ 611 (612)
- +.|.++++.+++
T Consensus 375 e-~~gki~~~~l~N 387 (733)
T COG4590 375 E-DQGKIRLAQLEN 387 (733)
T ss_pred e-cCCceEEEEecC
Confidence 4 456799988875
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.45 E-value=6.3 Score=36.39 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=86.0
Q ss_pred CCceeEEEEcc-CCCEEEEecCCE------EEEEeCCC--C--ceee-----EeccCCC--------ceEEEEECCCCCE
Q 007229 18 RGRGILISGNP-KTDTILYCNGRS------VLIRYLDK--P--LHVE-----FYGEHGY--------PVTVARYSPNGEW 73 (612)
Q Consensus 18 ~~~v~~~~~s~-d~~~l~~~~~~~------i~i~~~~~--~--~~~~-----~~~~h~~--------~v~~~~~s~d~~~ 73 (612)
-+..+.+.+.| ++++++....+. ++..++.. + ..+. .+..-.+ ...++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 46789999994 666666665555 55555443 1 1111 1111111 4457888889999
Q ss_pred EEEeeCc------CeEEEeecCCCceeeee-----e---------eecCCCeEEEEECCCCCEEEEEeCCC-----Ce--
Q 007229 74 IASADVS------GSVRIWGTHNGFVLKNE-----F---------KVLSGRIDDLQWSPDGLRIVACGDGK-----GK-- 126 (612)
Q Consensus 74 las~~~d------~~i~iwd~~~~~~~~~~-----~---------~~~~~~i~~~~~s~~~~~l~~~~~~~-----~~-- 126 (612)
+++.-.+ ..|..++.. ++.+... + ...+....+|+++|||+.|+++.+.. ..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 9988777 788888876 4321111 1 12345789999999999777765432 11
Q ss_pred ----eeEEEEEecC---Cceeeee----cc-----CCceEEEEEEcCCCCE
Q 007229 127 ----SFVRAFMWDS---GTTVGDF----DG-----HSRRVLSCEFKPTRPF 161 (612)
Q Consensus 127 ----~~i~i~~~~~---~~~~~~~----~~-----~~~~v~~~~~~~~~~~ 161 (612)
..++++.++. ++....+ .. ....+..+.+.+++++
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 1256666663 2222222 22 3567788888888874
No 468
>PLN02153 epithiospecifier protein
Probab=93.37 E-value=6.9 Score=36.55 Aligned_cols=61 Identities=7% Similarity=-0.046 Sum_probs=31.9
Q ss_pred CcEEEEEecC-------CcEEEEEcCCceeeeeceec---cc---ceEEEEeeccEEEEecCCC-----eEEEEecCCC
Q 007229 340 QQTILSSSYD-------GAIIKWIRGVGYSSKLEKKY---DA---RIKCLAAVEEVIFTAGFDN-----KVWRVPLCEG 400 (612)
Q Consensus 340 ~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~---~~---~i~~~~~~~~~l~~~~~~~-----~i~~~~~~~~ 400 (612)
+.+++.|+.+ ..+.+||..+.+-....... .. ....+...+..++.|+.++ .+.++|..+.
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 5566666653 35778888876554432211 11 1223344666666766532 4556665543
No 469
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.25 E-value=2.8 Score=31.74 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee------cccccccceeEEEecC-----CCcEEEEeecCcEEEEEE
Q 007229 497 ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN------NMLFHTARINCLAWSP-----SSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 497 i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~~i~~~~~s~-----~~~~l~s~~~d~~i~iwd 565 (612)
|..-.|......|++++.-|+|.|++......... .+..-...|++++-.+ +...|+.|+... +..||
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~-llaYD 79 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTS-LLAYD 79 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccce-EEEEE
Q ss_pred ccCCCcceeeeecccccCeeeEEEe----cCceEEEccCCCeEEEEEeccC
Q 007229 566 IGKPASSRITIKNAHLGGVYGVAFM----DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 566 ~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
+.. ..-...+.-.+.|.++.+- ...-|+..|.+..|.-+|.+-+
T Consensus 80 V~~---N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 80 VEN---NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred ccc---CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.22 E-value=5.6 Score=35.11 Aligned_cols=210 Identities=11% Similarity=0.117 Sum_probs=119.3
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecC------CCceeeeeeee-----cCCCeEEEEECCCCCE------------E
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTH------NGFVLKNEFKV-----LSGRIDDLQWSPDGLR------------I 117 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~------~~~~~~~~~~~-----~~~~i~~~~~s~~~~~------------l 117 (612)
.-..|+|+|.+.+-++....+...+||.. ....+...+.. .....+.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34679999999888888888899999997 22223333332 2235677777654333 4
Q ss_pred EEEeCCCCeeeEEEEEecC--Cc-----eeeeec-cCCceE-EEEEEc--CCCCEEEEEeecCCeEEEEeCCCCeeee--
Q 007229 118 VACGDGKGKSFVRAFMWDS--GT-----TVGDFD-GHSRRV-LSCEFK--PTRPFRIATCGEDFLVNFYEGPPFKFKL-- 184 (612)
Q Consensus 118 ~~~~~~~~~~~i~i~~~~~--~~-----~~~~~~-~~~~~v-~~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~~~-- 184 (612)
+.+++++ +|.-|.. +. ....+. .....| ..+++- ..+.++.++--..++|.++|-.-.+...
T Consensus 104 if~tEdG-----TisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 104 LFVTEDG-----TLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred EEEeCCc-----eEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 5566666 3555551 11 111222 112333 334444 3456666776778999999854332211
Q ss_pred cccccc-----cc-----------eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec---
Q 007229 185 SHREHS-----NF-----------VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--- 245 (612)
Q Consensus 185 ~~~~~~-----~~-----------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--- 245 (612)
.+.... .+ |+-..-.++.+.=+.+..-|.|-+||+ .|..++++... +.-...+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~-g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS-GRLNAPWGLAIAPESF 256 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC-CcccCCceeeeChhhh
Confidence 011100 00 111111122222222333478999995 68888888432 4445566777755
Q ss_pred ---CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 246 ---DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 246 ---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
.+.+|+---.||+|..||. .+++.+-.+....
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~----~sG~~~g~L~~~~ 291 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDP----QSGAQLGQLLDPD 291 (336)
T ss_pred CCCCCCeEEeecCCceeEEecC----CCCceeeeecCCC
Confidence 4666776667999999998 7788777666543
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.05 E-value=0.55 Score=27.16 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=24.3
Q ss_pred cCCCEEEEec--CCEEEEEeCCCCceeeEecc
Q 007229 28 PKTDTILYCN--GRSVLIRYLDKPLHVEFYGE 57 (612)
Q Consensus 28 ~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~ 57 (612)
||+++|.++. ++.|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6888888776 68999999998888776654
No 472
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.03 E-value=6.5 Score=35.37 Aligned_cols=183 Identities=10% Similarity=0.066 Sum_probs=90.7
Q ss_pred cEEEEEcCCceeeeecee------cccceEEEEeec-------cEEE-EecCCCeEEEEecCCCCCCccceeccCCCcce
Q 007229 351 AIIKWIRGVGYSSKLEKK------YDARIKCLAAVE-------EVIF-TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLD 416 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~~------~~~~i~~~~~~~-------~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 416 (612)
.|.+||+.+++......- ..+.+..+.++. .+++ +=...+.|.++|+.+++............+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 455666666665443221 355667777733 2333 33444588889988876431111111111111
Q ss_pred eeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCccc-----cc--
Q 007229 417 LSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTL-----TE-- 486 (612)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~-----~~-- 486 (612)
..+... +. .+.....+..++.+| ++++|....-.+ -++|.+.+..+ ..
T Consensus 115 ~~~~i~------------------g~---~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~ 172 (287)
T PF03022_consen 115 GPFTIG------------------GE---SFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ 172 (287)
T ss_dssp EEEEET------------------TE---EEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH
T ss_pred cceecc------------------Cc---eEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccc
Confidence 111111 11 112223367777766 778888766543 34454433211 00
Q ss_pred ----ceeecccc-CceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc-----eeeecccccccceeEEEecC--CCcEEEE
Q 007229 487 ----EMVLEKHR-GAITVIQYSPDVSMFASADGNREAIVWDRVSKE-----VKLNNMLFHTARINCLAWSP--SSTMVAT 554 (612)
Q Consensus 487 ----~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~s~--~~~~l~s 554 (612)
....-+.. .....++++++|.+..+--..+.|..|+..+.. .+...-...-..+..+.+.+ +|.+.+.
T Consensus 173 ~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 173 ALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp -HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred cccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 11111222 356778999999999999999999999988722 11111111123567788887 6665444
Q ss_pred e
Q 007229 555 G 555 (612)
Q Consensus 555 ~ 555 (612)
.
T Consensus 253 s 253 (287)
T PF03022_consen 253 S 253 (287)
T ss_dssp E
T ss_pred E
Confidence 4
No 473
>PRK13613 lipoprotein LpqB; Provisional
Probab=92.93 E-value=11 Score=37.87 Aligned_cols=190 Identities=13% Similarity=0.031 Sum_probs=103.4
Q ss_pred ceeEEEEccCCCEEEEecC--CEEEEEeCCCCce-----eeEeccCCCceEEEEECCCCCEEEEeeC--cC--eEEEeec
Q 007229 20 RGILISGNPKTDTILYCNG--RSVLIRYLDKPLH-----VEFYGEHGYPVTVARYSPNGEWIASADV--SG--SVRIWGT 88 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~--~~i~i~~~~~~~~-----~~~~~~h~~~v~~~~~s~d~~~las~~~--d~--~i~iwd~ 88 (612)
.+.+.+.|+++..+|+..+ ..+++..+..+.. ...+. ....+.-.|.++| .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC
Confidence 6789999999999998873 3666666543332 12233 2347777888877 4444422 22 2555543
Q ss_pred CCCceeeeeeeecCC-CeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCc-eeee---eccCCceEEEEEEcCCCC
Q 007229 89 HNGFVLKNEFKVLSG-RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGT-TVGD---FDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~-~~~~---~~~~~~~v~~~~~~~~~~ 160 (612)
+++..........+ .|..+..|+||.+++...+..+...+.+-... .+. .+.. +......+.+++|..++.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~s 519 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQ 519 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCE
Confidence 44332111122333 79999999999998877653222123332222 332 1211 222233589999999997
Q ss_pred EEEEEee-cCCeEEEEe--CCCCeeeecccccccceEEEEECCCCC-eEEEEEcCCcE
Q 007229 161 FRIATCG-EDFLVNFYE--GPPFKFKLSHREHSNFVNCIRFSPDGS-KLISVSSDRKG 214 (612)
Q Consensus 161 ~~l~~~~-~d~~i~~wd--~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i 214 (612)
+++.+. .++...+|- +............-..+..++-..+.+ .++.+..++.|
T Consensus 520 -L~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 520 -LVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred -EEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 455443 333444554 332222222223445566677776655 34442555554
No 474
>PRK13614 lipoprotein LpqB; Provisional
Probab=92.93 E-value=11 Score=37.61 Aligned_cols=195 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC--eEEEeecCCCce---
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG--SVRIWGTHNGFV--- 93 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~--~i~iwd~~~~~~--- 93 (612)
..+.+.+.|+|++.+|+..+..-.+|-...+...+.+.. ....+.-.|.++| ++-+...+. .|....-.....
T Consensus 343 ~~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~-g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 343 LGPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTS-GSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred ccccceeecCCCceEEEecCCCcEEEEecCCCcceeeec-CCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Q ss_pred ----eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeeeccCC----ceEEEEEEcCCCCEE
Q 007229 94 ----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDFDGHS----RRVLSCEFKPTRPFR 162 (612)
Q Consensus 94 ----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~~~~~----~~v~~~~~~~~~~~~ 162 (612)
....-......|..+..|+||.+++.....++...+.|--.. .|.+...-.... ..+.++.|..++...
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~ 500 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVV 500 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEE
Q ss_pred EEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 163 IATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
+.+...++...++-+.-..-......+-..+..|+-..+.+.|+. ..|+.+..
T Consensus 501 V~~~~~~~~~~~~~v~v~~g~~~~l~~~~~~~~iaag~~~~~i~~-~sd~~v~~ 553 (573)
T PRK13614 501 VTKASATSNVVPELLSVDAGQPQQLAPWTGLTSITVGNGPEEVYG-QSDGGIFQ 553 (573)
T ss_pred EEeccCCCcceEEEEEeCCCCcccCCCcCCeEEEeecCCccceEE-EcCCCEEe
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.85 E-value=5.8 Score=34.29 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=78.0
Q ss_pred EEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC---Cceeeee---ccCCceEEEEEEc
Q 007229 83 VRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS---GTTVGDF---DGHSRRVLSCEFK 156 (612)
Q Consensus 83 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~---~~~~~~~---~~~~~~v~~~~~~ 156 (612)
=.+||+.+++. .............-+|.+||+.|.++|...+...++++.-.. ....... -.....--....-
T Consensus 48 s~~yD~~tn~~-rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTF-RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcE-EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 45899998863 211112222334446889999999999876655566655432 1111111 1122333445567
Q ss_pred CCCCEEEEEeecC-CeEEEEeCCCC-eeeec---cc-----ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 157 PTRPFRIATCGED-FLVNFYEGPPF-KFKLS---HR-----EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 157 ~~~~~~l~~~~~d-~~i~~wd~~~~-~~~~~---~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
|||+. ++.|+.. .+..+|..... ..... +. ....----+...|+|+.++.+..+ -.|||..+.+.+.
T Consensus 127 ~DG~v-lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 127 PDGRV-LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCE-EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence 89984 6665554 45555554211 11111 11 011112245667999988877654 5677988887777
Q ss_pred eee
Q 007229 227 EFS 229 (612)
Q Consensus 227 ~~~ 229 (612)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 763
No 476
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=4.8 Score=33.14 Aligned_cols=157 Identities=12% Similarity=0.044 Sum_probs=81.8
Q ss_pred CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccc
Q 007229 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF 192 (612)
Q Consensus 113 ~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 192 (612)
+|.++.+.|.-+.. .|++++..+++.+.+-+-....+..=-...-+.++-+---.+|.-..+|..+.+++..+. .++.
T Consensus 55 ~g~i~esTG~yg~S-~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFS-KIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccc-eeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence 45566666655433 677788878887766443322222211122233334444457778888888887766543 2233
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc---EEEEEEecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS---IYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
=..+ ..|++.|+.+....+++.-|.++-....++... ....+ +..+.|- +|...+-.=.+..|...+. +
T Consensus 133 GWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p----~ 204 (262)
T COG3823 133 GWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP----D 204 (262)
T ss_pred ceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcC----C
Confidence 3343 345666766665666777777665554444221 11122 2233343 4544443333444555555 5
Q ss_pred CCeeEeeeec
Q 007229 270 GGRVIKTFAS 279 (612)
Q Consensus 270 ~~~~~~~~~~ 279 (612)
+++.+..+..
T Consensus 205 sGrV~~widl 214 (262)
T COG3823 205 SGRVVAWIDL 214 (262)
T ss_pred CCcEEEEEEc
Confidence 6666555543
No 477
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.57 E-value=8.6 Score=35.56 Aligned_cols=97 Identities=10% Similarity=0.141 Sum_probs=50.1
Q ss_pred CCCeEEEEec-----CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC----eEEEEecCCcceeee
Q 007229 461 DGSEAIVGGQ-----NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR----EAIVWDRVSKEVKLN 531 (612)
Q Consensus 461 ~~~~l~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~----~i~iwd~~~~~~~~~ 531 (612)
++++.+.|+. ...+..||+.+.+......+... .+....+...++++.+.|+.++ .+..||..+.+-...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~ 201 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV 201 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC
Confidence 4556666653 23688899988776433322211 1222233345677888887664 356788877653211
Q ss_pred ccccc-ccce---eEE-EecCCCcEEEEeecC
Q 007229 532 NMLFH-TARI---NCL-AWSPSSTMVATGSID 558 (612)
Q Consensus 532 ~~~~~-~~~i---~~~-~~s~~~~~l~s~~~d 558 (612)
..... ..+. ... ....++++++.|+.+
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 11000 0111 111 122367788888865
No 478
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.52 E-value=0.91 Score=38.70 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=40.1
Q ss_pred ECCCCCEEEEeeCcCeEEEeecCCCceeeee------ee-------ecCCCeEEEEECCCCCEEEEEeCC
Q 007229 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKNE------FK-------VLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 67 ~s~d~~~las~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
+..++++|+..+.+|.+++||+.+++.+... +. .....|..+.++.+|.-+++-+++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng 87 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG 87 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 5567889999999999999999998753322 22 234566777777777666665554
No 479
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.52 E-value=11 Score=36.56 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=25.2
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999998889999999999999999975
No 480
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.50 E-value=8.7 Score=35.49 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=82.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCC------eeeEEEEEecCC--cee-----eeeccCCc--------eEEEEEEcCCCC
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKG------KSFVRAFMWDSG--TTV-----GDFDGHSR--------RVLSCEFKPTRP 160 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~------~~~i~i~~~~~~--~~~-----~~~~~~~~--------~v~~~~~~~~~~ 160 (612)
-+.+..+.+.|++..+++.++++. .....+-. +.+ ..+ ..+....+ ...+|++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDY-DQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeec-cCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788888876666777777664 11111111 111 011 11111111 345788877777
Q ss_pred EEEEEeecC------CeEEEEeCCCCeeeecc---------------cccccceEEEEECCCCCeEEEEEcC-----C--
Q 007229 161 FRIATCGED------FLVNFYEGPPFKFKLSH---------------REHSNFVNCIRFSPDGSKLISVSSD-----R-- 212 (612)
Q Consensus 161 ~~l~~~~~d------~~i~~wd~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~d-----g-- 212 (612)
++++.-.+ ..|..++.. ++....+ ...+....+|+++|+|+.|+++.+. +
T Consensus 98 -~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 -FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred -EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 47777667 788888866 4443332 1234568899999999977766442 2
Q ss_pred c-------EEE--EecCC-CCeeeeeeccCC------ccccEEEEEEecCCCEEEE
Q 007229 213 K-------GLI--YDGKS-GEKIGEFSSEDG------HHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 213 ~-------i~v--wd~~~-~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~ 252 (612)
. +++ ||..+ ++....+..... ....+..+.+.+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 444 45444 322222211111 4567888888888886554
No 481
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.37 E-value=22 Score=39.73 Aligned_cols=158 Identities=14% Similarity=0.144 Sum_probs=86.0
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
+.|...++.+.-++++.. +=. .|+.++.||.........-.....++..+.-.-||+..+ .++. .+-|+..+.
T Consensus 359 kaH~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~-~l~nLSs~~ 431 (1774)
T PF11725_consen 359 KAHIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDD-TLVNLSSGQ 431 (1774)
T ss_pred HHHHHHhhccccCCCCCe-EEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCC-ceeecCCCC
Confidence 347777888888888773 221 356677777665543311111223344444444554332 2221 133444443
Q ss_pred eeeeeeccCCccccEEEEEEecCCCE-EEEEeCCCcEEEEEeecCCCCCee--EeeeeccCccccceeeeeeeccCCEEE
Q 007229 224 KIGEFSSEDGHHGSIYAVSWSPDGKK-VLTVSADKSAKVWEILEDGSGGRV--IKTFASSTSNAVEDMLVGCLWQNDHLI 300 (612)
Q Consensus 224 ~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (612)
... ..-..+.+...+++++. ++++.....+.+|++......... -..++...... ....+...+++|+
T Consensus 432 ~~~------~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a---~A~~VgLs~drLF 502 (1774)
T PF11725_consen 432 MSE------AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKA---QAQSVGLSNDRLF 502 (1774)
T ss_pred cch------hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCch---hhhheeecCCeEE
Confidence 222 22345778888899987 444444456699998543222222 22333332111 4444555678999
Q ss_pred EEEcCCEEEEEEcCCCC
Q 007229 301 TVSLGGIISIFSASNLD 317 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~ 317 (612)
++..+|.++.-++....
T Consensus 503 vADseGkLYsa~l~~~~ 519 (1774)
T PF11725_consen 503 VADSEGKLYSADLPAAQ 519 (1774)
T ss_pred EEeCCCCEEeccccccc
Confidence 99999999988866543
No 482
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.24 E-value=8 Score=34.44 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=55.7
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee------CcCeEEEeecCCCceeeeeeee-----cCCCeEE
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD------VSGSVRIWGTHNGFVLKNEFKV-----LSGRIDD 107 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~------~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~ 107 (612)
..|++||.++.+=...-.+-.+.|+++.|..+.++++.|. ....+..||..+..- ..+.. -.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEEE
Confidence 4899999998776665556788999999998888888874 456789999988752 22332 2467888
Q ss_pred EEECC-CCCEEE
Q 007229 108 LQWSP-DGLRIV 118 (612)
Q Consensus 108 ~~~s~-~~~~l~ 118 (612)
+.+.. |+..+.
T Consensus 94 ~~~~~~d~~~~~ 105 (281)
T PF12768_consen 94 LTFISNDGSNFW 105 (281)
T ss_pred EEeeccCCceEE
Confidence 87743 444444
No 483
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.23 E-value=0.038 Score=50.83 Aligned_cols=135 Identities=12% Similarity=0.130 Sum_probs=91.7
Q ss_pred cceeeecCCCCcEEEEEeeccEEEee-cccceeeecccceEEEEEEccCCCeEEE-EecCCeEEEEEccCcccccceeec
Q 007229 414 PLDLSLALSSPELALVSTESGVILLD-SLKVMSKIDLGFTVTACAIAPDGSEAIV-GGQNGKLHIYSISGNTLTEEMVLE 491 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~ 491 (612)
+....+.+.+..+++.....-+..+| .++...+...+.....+++..++..+++ +-..+.+++||+.+..-.....-.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 44455566666666666666566666 4455555556666777888887766554 556789999999865432111111
Q ss_pred cccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcE
Q 007229 492 KHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTM 551 (612)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 551 (612)
.|.... +.|++....++.+...|.+.|++..+.+.. .....|..+++++++.+.+..
T Consensus 117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred cchHHH--HhhccCCccccccccccceEEEeccchhhh-hhhcccccceeEEEeccccee
Confidence 222222 789999999999999999999998887765 334448999999999987653
No 484
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.01 E-value=0.025 Score=51.92 Aligned_cols=146 Identities=10% Similarity=0.101 Sum_probs=97.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK 183 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 183 (612)
......|-|.+.-++.++.+. .+..+|.......-...++....++|..+++.+++.+-..+.+.+||+.+....
T Consensus 36 ~pi~~~w~~e~~nlavaca~t-----iv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANT-----IVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ccceeeEecCCCceehhhhhh-----HHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 444567778777777766654 234444333222222344556678888888867777888899999998765432
Q ss_pred ec-cc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 184 LS-HR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 184 ~~-~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
.. +. .|.... +.|++.+..++.+...|.+.+++..+.+.+... ..|...++++++.+.+. .+.++.|..+.
T Consensus 111 qLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~---Gkh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 111 QLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM---GKHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred HHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh---cccccceeEEEecccce-eeecCcHHHHH
Confidence 22 11 122222 789998889999989999999998887777766 23999999999998775 44454554443
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.99 E-value=0.81 Score=25.95 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=21.6
Q ss_pred eccCCCceEEEEECCCCCEEEEee-Cc--CeEEEe
Q 007229 55 YGEHGYPVTVARYSPNGEWIASAD-VS--GSVRIW 86 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~-~d--~~i~iw 86 (612)
+......-...+|||||++|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445566778999999999988765 34 555555
No 486
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.86 E-value=7.9 Score=33.54 Aligned_cols=135 Identities=9% Similarity=-0.048 Sum_probs=78.4
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeec
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 532 (612)
...++..|||..-++.-.+..|-..|...+.....-........-+.+--+|.|+.-++....+.+..+|-....-..-.
T Consensus 191 pyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred CcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeee
Confidence 44567777777777666666666666655532111112221233455566778888888777888888887665544334
Q ss_pred ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 533 MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
+.+....-.++.....++.-.+-...+.|.-+|-++ ..+.++....-....+...
T Consensus 271 LPgs~arpys~rVD~~grVW~sea~agai~rfdpet---a~ftv~p~pr~n~gn~ql~ 325 (353)
T COG4257 271 LPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET---ARFTVLPIPRPNSGNIQLD 325 (353)
T ss_pred CCCCCCCcceeeeccCCcEEeeccccCceeecCccc---ceEEEecCCCCCCCceecc
Confidence 454555566677766666555555556677777766 3444444333333344443
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.76 E-value=4.9 Score=38.56 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=37.0
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec-----cccCceEEEEEcCCC
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-----KHRGAITVIQYSPDV 506 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~ 506 (612)
..+.|+|.||+++|++--..|.|++++..++.......+. ...+....|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4788999999987776555699999986554321111111 124668899999874
No 488
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.73 E-value=9 Score=33.93 Aligned_cols=87 Identities=13% Similarity=0.188 Sum_probs=52.1
Q ss_pred cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC------CCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP------DVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 460 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
++++.=+.|..-|.|-+||+...-+ ....-.+.-..-..|+..| .+.+|+---.||+|..+|..+++.+-...
T Consensus 210 ~~~~d~v~G~G~G~VdvFd~~G~l~-~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 210 ADRNDEVAGAGLGYVNVFTLNGQLL-RRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CcccccccCCCcceEEEEcCCCcEE-EEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 3443344455567899999875443 1122223333456677655 56788877789999999999888653332
Q ss_pred cccc-----cceeEEEecC
Q 007229 534 LFHT-----ARINCLAWSP 547 (612)
Q Consensus 534 ~~~~-----~~i~~~~~s~ 547 (612)
.... .....|.|-.
T Consensus 289 ~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 289 DPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEecCeEEeeeCC
Confidence 2222 2245666654
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=4.2 Score=43.41 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=87.6
Q ss_pred EEEEECCC-CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEE--------ECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 63 TVARYSPN-GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ--------WSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 63 ~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
+.+-+-|. ++.-+| .|..+.+|+++++.. ...+.+-...|..+. |-|.=++|+..+.......+-|..
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 33444443 443444 477899999998653 334555555555554 344555665555443221111111
Q ss_pred ecCCcee------eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC----CCC----ee----------------e
Q 007229 134 WDSGTTV------GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG----PPF----KF----------------K 183 (612)
Q Consensus 134 ~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~----~~~----~~----------------~ 183 (612)
-+..... ..+....-.|.++....+|+ +..++.|| .+|.+ ..+ ++ +
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCc--EEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 1111111 22233466789999888886 55555666 44431 110 00 1
Q ss_pred eccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 184 LSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 184 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
..+. .+.++|..++....-+.+.+-++.|+|.+||+..
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1123 5677999999998888899999999999999876
No 490
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.62 E-value=0.98 Score=26.07 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=25.4
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccc
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE 188 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 188 (612)
|++++++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56777777777889999999998887776554
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.50 E-value=1 Score=41.53 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=90.4
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceee-Ee-ccCC----CceE-EEEECCCCCEEEEeeCcCeEEEe-ecCC
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVE-FY-GEHG----YPVT-VARYSPNGEWIASADVSGSVRIW-GTHN 90 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~-~~-~~h~----~~v~-~~~~s~d~~~las~~~d~~i~iw-d~~~ 90 (612)
+.+..+-+.|||+++..-+++.+.|+++.+..... .+ .... ..|+ ++..-..|.-|..++.||-|.-| |+..
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 46778889999999999999999999988654321 11 1111 2233 22233456667777788888777 3333
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
+.. .|-..+....+.|....++.... +.+ -+++-+..|
T Consensus 301 ~~~------p~l~h~R~f~l~pa~~~~l~pe~-----------------------------------~rk-gF~~l~~~G 338 (733)
T COG4590 301 DGQ------PHLNHIRNFKLAPAEVQFLLPET-----------------------------------NRK-GFYSLYRNG 338 (733)
T ss_pred CCC------CcceeeeccccCcccceeecccc-----------------------------------ccc-eEEEEcCCC
Confidence 221 12222333333333222221111 111 244555555
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
++.++.....+.+..-+ --..+.-+++||++.+|++- ..|.++++.+++..+.
T Consensus 339 ~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 339 TLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred ceeeeecccCcceehhh-hhcCcceeeeCcccchheee-cCCceEEEEecCCCCC
Confidence 56555433333222211 22356678999999999864 4578999988765543
No 492
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.22 E-value=22 Score=37.53 Aligned_cols=197 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEee--------------cccceeeecccceEEEEEEc------cCCCeEEEEecCC
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLD--------------SLKVMSKIDLGFTVTACAIA------PDGSEAIVGGQNG 472 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~~s------~~~~~l~~~~~dg 472 (612)
+....+-...+..+-+..-...-..|. .......+....+|..++|. .....++..-...
T Consensus 28 ~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~ 107 (765)
T PF10214_consen 28 PILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTET 107 (765)
T ss_pred EEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEEEEcCC
Q ss_pred eEEEEE----------------ccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEec----CCcceeee
Q 007229 473 KLHIYS----------------ISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDR----VSKEVKLN 531 (612)
Q Consensus 473 ~v~i~d----------------~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~----~~~~~~~~ 531 (612)
.+.|+. +.-..+..+..-.....+..+++|+| +.+.||..+..|...||++ ........
T Consensus 108 st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~ 187 (765)
T PF10214_consen 108 STTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR 187 (765)
T ss_pred EEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee
Q ss_pred cccccccce------e----EEEecCCCcEEEEeecCcEEEEEEccCCCccee-eeecccccCeeeEEEe-cCceEEEcc
Q 007229 532 NMLFHTARI------N----CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRI-TIKNAHLGGVYGVAFM-DDFNVVSSG 599 (612)
Q Consensus 532 ~~~~~~~~i------~----~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~-~~~~l~s~~ 599 (612)
....+.+.+ . .+.|.++-+.|+.++... +.++|+++.. ..- .........|..+.-+ .+...+-.-
T Consensus 188 ~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~-~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL 265 (765)
T PF10214_consen 188 LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-LMLIDFESNW-QTEYLVTAKTWSWILDVKRSPDNPSHVFIL 265 (765)
T ss_pred eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc-eEEEECCCCC-ccchhccCCChhheeeEEecCCccceEEEE
Q ss_pred CCCeEEEEEecc
Q 007229 600 EDACIRVWRLAT 611 (612)
Q Consensus 600 ~d~~i~~w~~~~ 611 (612)
....|...++.+
T Consensus 266 Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 266 TSKEIIWLDVKS 277 (765)
T ss_pred ecCeEEEEEccC
No 493
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=15 Score=35.26 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=55.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK 183 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 183 (612)
.|..+..++.|..++-.|.++ .+.++.-....+-..++.....|+|=.|.-+.+ +.+.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G---i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~--~ftss---------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG---LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER--FFTSS---------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCe---eEEEEchhhcCccceecCCCceEEEEeecccce--eeccC----------------
Confidence 466777788888888888777 222222111111122222222333333333322 22211
Q ss_pred ecccccccceEEEEECCCC---CeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 184 LSHREHSNFVNCIRFSPDG---SKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 184 ~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
..-.+..++|+|+. ..|..-+.|..+++||+.....+...
T Consensus 164 -----~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 -----TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred -----CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11235677888865 56777788999999999887766544
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.61 E-value=15 Score=34.43 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=62.0
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC------eEEEEecCCcceeeeccccc--------c
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR------EAIVWDRVSKEVKLNNMLFH--------T 537 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~--------~ 537 (612)
..+.+||..+++......+.. ...........++++.+.|+.+. .+..+++............. .
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPF-LGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECccCCC-CcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 468999998887644333321 11111122234677777776531 24455553322111111111 1
Q ss_pred cceeEEEecCCCcEEEEeecC----------------------cEEEEEEccCCCcceeeeecccccCeeeEEEe-cCce
Q 007229 538 ARINCLAWSPSSTMVATGSID----------------------TCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFN 594 (612)
Q Consensus 538 ~~i~~~~~s~~~~~l~s~~~d----------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 594 (612)
......+...++++.+.|+.+ ..+.+||.++..+..+..+.... -...+.. +++.
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~--~~~~~~~~~~~i 324 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL--AYGVSVSWNNGV 324 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--eeeEEEEcCCEE
Confidence 111111223477777888753 15778998874333333222111 1122333 7888
Q ss_pred EEEccCCC
Q 007229 595 VVSSGEDA 602 (612)
Q Consensus 595 l~s~~~d~ 602 (612)
++.||.+.
T Consensus 325 yv~GG~~~ 332 (346)
T TIGR03547 325 LLIGGENS 332 (346)
T ss_pred EEEeccCC
Confidence 88888653
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.50 E-value=17 Score=35.00 Aligned_cols=105 Identities=9% Similarity=-0.003 Sum_probs=62.8
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCcee--eEe----c-cCCCceEEEEECCCC------CEEEEe--e-----
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHV--EFY----G-EHGYPVTVARYSPNG------EWIASA--D----- 78 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~--~~~----~-~h~~~v~~~~~s~d~------~~las~--~----- 78 (612)
....|+|.|||++|++-. .|.|++++..++... ..+ . ...+....|+++|+- ++|... .
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 567899999999888887 599999986654321 111 1 135778899999884 233332 1
Q ss_pred ---CcCeEEEeecCCC--ce--eeeeeeec----CCCeEEEEECCCCCEEEEEeCCC
Q 007229 79 ---VSGSVRIWGTHNG--FV--LKNEFKVL----SGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 79 ---~d~~i~iwd~~~~--~~--~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
....|.-|.+... .. ....+... ...-..|+|.|||+++++.|+.+
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 1234555555421 10 11122211 11245678999999888877763
No 496
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.45 E-value=1.5 Score=24.76 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=22.8
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecC--CeEEEE
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGED--FLVNFY 175 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~w 175 (612)
+......-....|+|||+.++.+...+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455677889999999877777777 666665
No 497
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.43 E-value=11 Score=32.69 Aligned_cols=237 Identities=9% Similarity=-0.012 Sum_probs=146.6
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
-+....++-+|||..-..+. .+.|--.|..+|+..+.-.+....-..|..-|||..-++-+.. -|.-.|-++.+....
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 34556788899998777766 5777778999999888777777777788999999766665433 566667766654322
Q ss_pred eee--ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 97 EFK--VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 97 ~~~--~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
.+. .-........|.+.|..-.++...- +. .+| ....+..+... ...-+.|+..|+|. +-++.-.+..|
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~---yG---rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnai 212 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGA---YG---RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAI 212 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecccc---ce---ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccce
Confidence 222 2345788899999998877765432 11 222 22334444332 34457788899998 46665566667
Q ss_pred EEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 173 NFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 173 ~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
-.-|...+..... -......-..+--+|.|..-++....+.+..+|..... ..+...+ +....-.++.....++.-
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLP-gs~arpys~rVD~~grVW 290 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLP-GSKARPYSMRVDRHGRVW 290 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCC-CCCCCcceeeeccCCcEE
Confidence 6667655532211 11212334455556777777776667888888876554 3333222 444555666666666554
Q ss_pred EEEeCCCcEEEEEe
Q 007229 251 LTVSADKSAKVWEI 264 (612)
Q Consensus 251 ~~~~~dg~i~iw~~ 264 (612)
++--..|.|.-+|.
T Consensus 291 ~sea~agai~rfdp 304 (353)
T COG4257 291 LSEADAGAIGRFDP 304 (353)
T ss_pred eeccccCceeecCc
Confidence 44444466666665
No 498
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.21 E-value=16 Score=34.20 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=27.4
Q ss_pred CcEEEEEecC-----------CcEEEEEcCCceeeeeceeccc---ceEEE-EeeccEEEEecCC
Q 007229 340 QQTILSSSYD-----------GAIIKWIRGVGYSSKLEKKYDA---RIKCL-AAVEEVIFTAGFD 389 (612)
Q Consensus 340 ~~~l~~~~~d-----------g~i~~wd~~~~~~~~~~~~~~~---~i~~~-~~~~~~l~~~~~~ 389 (612)
+.+.+.|+.+ ..+..||..+..-......... ....+ ...+...+.++.+
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 6777777753 2477788887766554321111 12223 2366666666654
No 499
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.99 E-value=23 Score=35.69 Aligned_cols=166 Identities=12% Similarity=0.122 Sum_probs=93.1
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--eeeeeeecCCCeEEEEECC------CCCEEEEEeC-CCCeee
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSP------DGLRIVACGD-GKGKSF 128 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~-~~~~~~ 128 (612)
-.+.|..+.|.++++.+++.-.+|.|.+||...+.. ....-..++..+.--.|-+ ...++++.+. .+....
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 367899999999999999999999999999943321 1111112222222113333 2345665555 444445
Q ss_pred EEEEEe-cCCceeeeec---cCCceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCeeeeccccc-----c-cceEEEE
Q 007229 129 VRAFMW-DSGTTVGDFD---GHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFKFKLSHREH-----S-NFVNCIR 197 (612)
Q Consensus 129 i~i~~~-~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----~-~~v~~~~ 197 (612)
.+++.. .....+..+. .+........|.- +|. |.-- .++.|.+|++...+...++.-. . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~--LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK--LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCE--EEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 666666 2333333332 2222222333332 343 3322 6789999999988876664321 1 2333433
Q ss_pred ECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 198 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.|..++++. +.++.|.+.|+.-...+.++
T Consensus 285 -~~s~nRvLL-s~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 285 -PPSPNRVLL-SVNNKIYLLDLKFESILSEF 313 (670)
T ss_pred -cCCCCeEEE-EcCCEEEEEeehhhhhhhhh
Confidence 234444444 34688999998876666665
No 500
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=89.72 E-value=26 Score=35.96 Aligned_cols=149 Identities=12% Similarity=0.117 Sum_probs=89.4
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-C----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee------CcCe
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-G----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD------VSGS 82 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~------~d~~ 82 (612)
+....+.+..+.|+|||+.++..+ + ..+++.+.. + .+..+...|....|+|+|+.++... .++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 444567888999999999999988 3 245555555 3 3455777888999999999888721 2222
Q ss_pred -------EEEeecCCC-cee----------eeeeeecCCCeEEEEECCCCCEEEEEeCCCC--e--eeEEEEEecCCcee
Q 007229 83 -------VRIWGTHNG-FVL----------KNEFKVLSGRIDDLQWSPDGLRIVACGDGKG--K--SFVRAFMWDSGTTV 140 (612)
Q Consensus 83 -------i~iwd~~~~-~~~----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~--~--~~i~i~~~~~~~~~ 140 (612)
+.+|....+ +.. ..........+....+.+++..++....... . ....++.. ....+
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 208 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGEL 208 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCce
Confidence 445544444 210 0112223345666677777777776654432 1 11222222 34444
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
..+......+..+.|.++++.+.+.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 209 ESLTPGEGSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred EEEcCCCceeeeeeeCCCCCeeEEeccC
Confidence 5555566668899999999854444433
Done!